BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780435|ref|YP_003064848.1| peptidase S11,
D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter
asiaticus str. psy62]
(336 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254448546|ref|ZP_05062006.1| penicillin-binding protein 5 [gamma proteobacterium HTCC5015]
gi|198261929|gb|EDY86214.1| penicillin-binding protein 5 [gamma proteobacterium HTCC5015]
Length = 401
Score = 247 bits (629), Expect = 2e-63, Method: Composition-based stats.
Identities = 100/344 (29%), Positives = 164/344 (47%), Gaps = 9/344 (2%)
Query: 1 MRQFLVIIAMAMLS-----NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ FL+ IA+ S + + + L+D TG V++E+ D PAS
Sbjct: 23 MKHFLLAIALFATSLFSFQAVAVPIPSPPQLNANSWILMDFATGKVLSEHNADERIEPAS 82
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MT+YVV+ + ++ + +S+ A S + G ++ L+ LK L+++S
Sbjct: 83 ITKIMTSYVVYQAIDSGLISMSDSVPVSEKAWRMKGSRMFIEVGKSVPLEALLKGLVIQS 142
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND AVA+AE + TE+ F + MN +K LG++ +HF+N+ G HYTTARD+AILS
Sbjct: 143 GNDAAVALAEYVGGTEEAFAEQMNAAAKALGMTGSHFVNSTGWPHADHYTTARDIAILSH 202
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ D+P++ + K K PN N + DG+KTG T A+G+ + ASA +
Sbjct: 203 ALIRDYPEHYRVYAEKNYTYNSIKQPNRNALLWRDSSVDGIKTGHTEAAGYCLAASARRD 262
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPN 291
D LI+V++G R++ S +LL+ GF RK ++ ++ N
Sbjct: 263 DMRLISVVMGTESSGARSQYSQTLLNYGFRYYETRKLYAAGASLNAPRVWKGSIENLPIG 322
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ ++ T N + K T L K
Sbjct: 323 PASDLYVTIPRGQYKNLKPSLDGVPNPLEAPVAKGTQLGTIRVK 366
>gi|326794762|ref|YP_004312582.1| beta-lactamase [Marinomonas mediterranea MMB-1]
gi|326545526|gb|ADZ90746.1| Beta-lactamase [Marinomonas mediterranea MMB-1]
Length = 382
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 83/345 (24%), Positives = 141/345 (40%), Gaps = 9/345 (2%)
Query: 1 MRQFLVIIAMAMLS------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ + I+ + + Y L+D TG V+ E PA
Sbjct: 1 MKRLIGILLVFTSLFSIEVNAAPSLIPAPPQLSASSYILMDAYTGEVLVEQNSHKELPPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTKLMTAY+ + + +S+ A S ++G+ + L++ ++ +I++
Sbjct: 61 SLTKLMTAYIADYEIARGNISYDDQVRVSEAAWRMKGSRMFIREGTRVKLEDLMRGIIIQ 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND +VA+AE + E FV MN ++ LG+ THF N+ G HY++A D+A+LS
Sbjct: 121 SGNDASVAVAEHIAGAEGAFVDLMNQHAQLLGMKNTHFQNSTGFPAENHYSSAYDIALLS 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
FP+ + K + PN N + DG+KTG T A+G+ + ASA++
Sbjct: 181 RAKILQFPESYKMYAEKYFTYNDIRQPNRNKLLWRDKTVDGLKTGHTQAAGYCLAASAVR 240
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPN 291
LI+V++G R S L++ GF RK + ++ V
Sbjct: 241 NGTRLISVVMGTSSDEARATESQKLMNYGFRYYETRKLYSAGQVVNNAHVWGGATDSVKV 300
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ +L I +
Sbjct: 301 GFTDDVLVTMPRQQADSIPATLDLAPVIEAPISAGDVLGKVIVGQ 345
>gi|87119258|ref|ZP_01075156.1| D-alanyl-D-alanine carboxypeptidase [Marinomonas sp. MED121]
gi|86165649|gb|EAQ66916.1| D-alanyl-D-alanine carboxypeptidase [Marinomonas sp. MED121]
Length = 408
Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats.
Identities = 87/343 (25%), Positives = 149/343 (43%), Gaps = 9/343 (2%)
Query: 1 MRQFLVIIAMAMLSNIFP------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ ++ A MLS + + Y LLD TG V+ E+ + PA
Sbjct: 27 MKKPFILFAALMLSLVTSVYAAPTLIPAPPQLSATSYILLDAYTGEVLVEHNSRKEYPPA 86
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTKLMTAY+V L + +S+ A S ++G+ + L++ ++ +I++
Sbjct: 87 SLTKLMTAYIVDYERNRGNIGLEDMVRVSEKAWRMEGSRMFIREGTKVNLEDLMRGIIIQ 146
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND +VA+AE + +E F MN ++ LG++ +HF+N+ G GHY++A D+A+LS
Sbjct: 147 SGNDASVAVAEHIAGSEGAFADLMNQHAELLGMNNSHFVNSTGYPAEGHYSSAYDLAVLS 206
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
FP + K + PN N + DG+KTG T A+G+ + ASA++
Sbjct: 207 RAKIIQFPDSYPMYSEKYFTYNDIRQPNRNKLLWRDKTVDGLKTGHTEAAGYCLAASAVR 266
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPN 291
LI+V++G R + LL+ GF RK + + + V
Sbjct: 267 NGTRLISVVMGTKSDEARANETQKLLNYGFRYYETRKLYSRGQVINESKVWGGAAETVKI 326
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + + + +L +
Sbjct: 327 GFVDDVLVTIPRRQADAIPATLEISPTIQAPISAGDILGKIVV 369
>gi|254483505|ref|ZP_05096732.1| D-alanyl-D-alanine carboxypeptidase family protein [marine gamma
proteobacterium HTCC2148]
gi|214036226|gb|EEB76906.1| D-alanyl-D-alanine carboxypeptidase family protein [marine gamma
proteobacterium HTCC2148]
Length = 387
Score = 242 bits (616), Expect = 6e-62, Method: Composition-based stats.
Identities = 90/343 (26%), Positives = 167/343 (48%), Gaps = 14/343 (4%)
Query: 1 MRQFLVIIAMAMLSN---IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M +F + + +A+ + Y L+D N+G ++AE D P PASLT
Sbjct: 1 MIRFSLALFLALSIFGAQAATIVPSPPQIAAKAYLLVDANSGEILAEKNADMPLPPASLT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN-----STFKKGSTMTLDNALKLLI 112
K+MT+YV+ + + E + L+ +T+S+NA P + G +++D+ + ++
Sbjct: 61 KMMTSYVLATEIDEGRVALSDMVTVSENAWSQNPLFAGSSLMWIEPGKEVSIDDLQRGIV 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND VA+AE L +E F + MN+ ++ LG+ T+++N+HG+ H TTARD+A
Sbjct: 121 ISSGNDATVAVAEHLAGSEAVFAEMMNSHAEKLGMIDTYYVNSHGLPDPDHVTTARDLAT 180
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
LS + + P++ ++ + K N N + DG+KTG+T +G+ +VASA
Sbjct: 181 LSKAMIIEHPEHYAVYKEREFTYNNIKQYNRNSLLAEDPTVDGLKTGYTQEAGYCLVASA 240
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI+V+LGA R + SLL+ GF + + + +V +
Sbjct: 241 ERRGMRLISVVLGASSTRARKNETRSLLNYGFRFFETSELFEANQELDKPRIWKGQVDYV 300
Query: 293 SE------EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ V + + + T ++ +D E+ +++ +
Sbjct: 301 AVGILEETVVTLPRGKKKHLATNIELNQDIEAPVAVGDQLGTV 343
>gi|152996856|ref|YP_001341691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinomonas sp. MWYL1]
gi|150837780|gb|ABR71756.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinomonas sp. MWYL1]
Length = 382
Score = 242 bits (616), Expect = 7e-62, Method: Composition-based stats.
Identities = 91/345 (26%), Positives = 148/345 (42%), Gaps = 11/345 (3%)
Query: 1 MRQFLVIIAMAM------LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ L +++ + + Y L+D TG ++ E+ D PA
Sbjct: 1 MKKLLATLSLVFCFVSGSVFAAPSLIPTPPQLSASSYILMDAYTGDILVEHNADQALPPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTKLMTAY++ L L + IS+ A S ++G+ + L++ ++ +I++
Sbjct: 61 SLTKLMTAYIIEYELARGNLSLDDKVNISEKAWRMEGSRMFIREGTQVKLEDLMRGIIIQ 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND +VA AE + +E F MN ++ LG++ +HF+NA G HY++A D+A L+
Sbjct: 121 SGNDASVAAAEHIAGSESAFADLMNQHAQLLGMTNSHFVNATGFPAEDHYSSAHDIAKLA 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
FP+ + K + PN N + DGMKTG T A+GF + ASA++
Sbjct: 181 RATILQFPENYSMYAEKEFTYNNIRQPNRNKLLWRDKTVDGMKTGHTEAAGFCLAASAVR 240
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVP 290
LI V++G R S LL GF RK + + +N
Sbjct: 241 NGTRLITVVMGTKSDTARAIESQKLLDYGFRYYETRKLYSRGQVVNNARVWGGTQANVKV 300
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+E+V T + KE +L +
Sbjct: 301 GFAEDVLVTMPRQQGESIPATLDMHKE-IMAPIAVGDVLGKIVVG 344
>gi|83648479|ref|YP_436914.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396]
gi|83636522|gb|ABC32489.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396]
Length = 386
Score = 242 bits (616), Expect = 7e-62, Method: Composition-based stats.
Identities = 93/343 (27%), Positives = 152/343 (44%), Gaps = 9/343 (2%)
Query: 1 MRQFLVIIAMAMLSNIFP----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR ++ + + + A Y L+D +G +I E + PASL
Sbjct: 6 MRVYIAFFLCWAVGAAWADQASLIPSAPQIAASSYILMDAESGAIIVEKNSEERLPPASL 65
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MT+YV+ + + IS A + S ++G+++ L + LK +I++S
Sbjct: 66 TKMMTSYVLDYEVDQGNVSFNDEAPISVKAWKTGGSKMFVREGTSVRLGDLLKGIIIQSG 125
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND +VA+AE L +E F MN ++ LG+S T+F NA G+ HY++A D+A L+
Sbjct: 126 NDASVAVAEFLAGSEDAFASMMNQHAQRLGMSNTNFANATGLPSENHYSSAHDLAKLAKA 185
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
I DFP + K + PN N + DG+KTG T +G+ +V+SA++
Sbjct: 186 IINDFPNQYPLYSEKYFTYNNIRQPNRNLLLWRDKSVDGLKTGHTEEAGYCLVSSAVRDG 245
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNI 292
LI+V++GA R + + LL+ GF K + K D + + +
Sbjct: 246 MRLISVVMGAKSEEARARETLKLLNYGFRYFETHKLYSAGQKLVDSDIWAGSADTLPLGL 305
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
S+E+ T + DK E L K
Sbjct: 306 SKEIVVTIPRGKKDALEATVDIDKV-IKAPIEVGAELGKLTVK 347
>gi|270160121|ref|ZP_06188777.1| D-alanyl-D-alanine carboxypeptidase DacC [Legionella longbeachae
D-4968]
gi|289165102|ref|YP_003455240.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Legionella longbeachae NSW150]
gi|269988460|gb|EEZ94715.1| D-alanyl-D-alanine carboxypeptidase DacC [Legionella longbeachae
D-4968]
gi|288858275|emb|CBJ12143.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Legionella longbeachae NSW150]
Length = 422
Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats.
Identities = 96/322 (29%), Positives = 155/322 (48%), Gaps = 9/322 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A Y L+D N+G +IAE + PASLTK+MT YV+ + L ++ LT
Sbjct: 64 TPAAPILNAKAYILIDVNSGKIIAEKNSEERLPPASLTKMMTLYVISNALHHEQIHLTDN 123
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ +S+ A + S K+G + +++ LK +IV S ND VA+AE L TE F MN
Sbjct: 124 VRVSREAWKIGGSRMFIKEGQQVPVEDLLKGIIVDSGNDACVAMAEHLGGTENSFTDLMN 183
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++NLG+ +HF ++ G+ YTTA+D+AIL + DFPQY +++ K G +
Sbjct: 184 QQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALIIDFPQYYEWYKQKWFTYNGIR 243
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
PN N + DG+KTG T +GF +V+SA + + L+AV+LG ++R S L
Sbjct: 244 QPNRNRLLWRDNQVDGIKTGHTNDAGFCLVSSAKRDNMRLLAVVLGEPTDSSRADDSEKL 303
Query: 260 LSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEA 313
L+ GF + Y+ + ++E+ + + N K
Sbjct: 304 LNYGFRFFETHQLYKSGQSIAELPLYKGQIDKVAVGLNEDQYITIPTGQYQRLNITTKIP 363
Query: 314 KDKESHFIDFEKITLLKNKITK 335
E +K + + + +
Sbjct: 364 SYLE---APIKKGDKIGDLVVQ 382
>gi|296107091|ref|YP_003618791.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila 2300/99
Alcoy]
gi|295648992|gb|ADG24839.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila 2300/99
Alcoy]
Length = 407
Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 156/323 (48%), Gaps = 9/323 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L
Sbjct: 48 TTPAAPLLNAKAYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLND 107
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S++A + S K+G +++++ LK +IV S ND VA+AE L +E F M
Sbjct: 108 LVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIM 167
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++NLG+ +HF ++ G+ YTTA+D+AIL + DFP+Y +++ K G
Sbjct: 168 NQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGI 227
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ PN N + DG+KTG T +G+ +V+SA + + L+AV+LG + R S
Sbjct: 228 RQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEK 287
Query: 259 LLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKE 312
LL+ GF + Y+ ++E+ + + N K
Sbjct: 288 LLNYGFRFFETHQLYKSGQSIAELPLYKGTSDKVAVGLTEDQFITIPAGQYERLNISTKI 347
Query: 313 AKDKESHFIDFEKITLLKNKITK 335
+ D + +K + + I +
Sbjct: 348 SNDLQ---APIKKGDKVGDIIVQ 367
>gi|52841739|ref|YP_095538.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52628850|gb|AAU27591.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 430
Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 156/323 (48%), Gaps = 9/323 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L
Sbjct: 71 TTPAAPLLNAKAYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLND 130
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S++A + S K+G +++++ LK +IV S ND VA+AE L +E F M
Sbjct: 131 MVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIM 190
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++NLG+ +HF ++ G+ YTTA+D+AIL + DFP+Y +++ K G
Sbjct: 191 NQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGI 250
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ PN N + DG+KTG T +G+ +V+SA + + L+AV+LG + R S
Sbjct: 251 RQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEK 310
Query: 259 LLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKE 312
LL+ GF + Y+ ++E+ + + N K
Sbjct: 311 LLNYGFRFFETHQLYKSGQSIAELPLYKGTSDKVAVGLTEDQFITIPAGQYERLNISTKI 370
Query: 313 AKDKESHFIDFEKITLLKNKITK 335
+ D + +K + + I +
Sbjct: 371 SNDLQ---APIKKGDKVGDIIVQ 390
>gi|254496461|ref|ZP_05109338.1| D-alanyl-D-alanine carboxypeptidase [Legionella drancourtii LLAP12]
gi|254354317|gb|EET12975.1| D-alanyl-D-alanine carboxypeptidase [Legionella drancourtii LLAP12]
Length = 413
Score = 239 bits (608), Expect = 6e-61, Method: Composition-based stats.
Identities = 97/322 (30%), Positives = 157/322 (48%), Gaps = 9/322 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A Y L+D N+G VIAE + PASLTK+MT YV+ + L ++ LT
Sbjct: 55 TPAAPILNAKAYILIDVNSGKVIAEKNSEERLPPASLTKMMTLYVISNALHHEQIHLTDS 114
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ +SK+A + S K+G + +++ LK +IV S ND VA+AE + TE F MN
Sbjct: 115 VRVSKDAWKIGGSRMFIKEGQQVPVEDLLKGIIVDSGNDACVAMAEHIGGTENSFTDIMN 174
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++NLG+ +HF ++ G+ YTTA+D+AIL + DFPQY +++ K G +
Sbjct: 175 QQAQNLGMQNSHFTDSTGLPDPNLYTTAKDLAILGRALIVDFPQYYDWYKQKWFTYNGIR 234
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
PN N + DG+KTG T +GF +V+SA + + L+AV+LG + ++R S L
Sbjct: 235 QPNRNRLLWRDNQVDGLKTGHTSEAGFCLVSSAKRENMRLLAVVLGEPNDSSRADDSEKL 294
Query: 260 LSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEA 313
L+ GF + Y+ + ++E+ + + N K
Sbjct: 295 LNYGFRFFETHQLYKSGQSVTELPLYKGAVDKISIGLNEDQFITIPTGQYQRLNISTKVP 354
Query: 314 KDKESHFIDFEKITLLKNKITK 335
E +K + + + +
Sbjct: 355 SFLE---APIKKGDKIGDLVVQ 373
>gi|54297421|ref|YP_123790.1| hypothetical protein lpp1466 [Legionella pneumophila str. Paris]
gi|53751206|emb|CAH12617.1| hypothetical protein lpp1466 [Legionella pneumophila str. Paris]
Length = 430
Score = 239 bits (608), Expect = 6e-61, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 156/323 (48%), Gaps = 9/323 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L
Sbjct: 71 TTPAAPLLNAKAYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLND 130
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S++A + S K+G +++++ LK +IV S ND VA+AE L +E F M
Sbjct: 131 MVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIM 190
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++NLG+ +HF ++ G+ YTTA+D+AIL + DFP+Y +++ K G
Sbjct: 191 NQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGI 250
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ PN N + DG+KTG T +G+ +V+SA + + L+AV+LG + R S
Sbjct: 251 RQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEK 310
Query: 259 LLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKE 312
LL+ GF + Y+ ++E+ + + N K
Sbjct: 311 LLNYGFRFFETHQLYKSGQSIAELPLYKGTSDKVAVGLTEDQFITIPAGQYERLNISTKI 370
Query: 313 AKDKESHFIDFEKITLLKNKITK 335
+ D + +K + + I +
Sbjct: 371 SNDLQ---APIKKGDKVGDIIVQ 390
>gi|148359042|ref|YP_001250249.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila str.
Corby]
gi|148280815|gb|ABQ54903.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila str.
Corby]
Length = 430
Score = 239 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 156/323 (48%), Gaps = 9/323 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L
Sbjct: 71 TTPAAPLLNAKAYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLND 130
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S++A + S K+G +++++ LK +IV S ND VA+AE L +E F M
Sbjct: 131 LVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIM 190
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++NLG+ +HF ++ G+ YTTA+D+AIL + DFP+Y +++ K G
Sbjct: 191 NQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGI 250
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ PN N + DG+KTG T +G+ +V+SA + + L+AV+LG + R S
Sbjct: 251 RQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEK 310
Query: 259 LLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKE 312
LL+ GF + Y+ ++E+ + + N K
Sbjct: 311 LLNYGFRFFETHQLYKSGQSIAELPLYKGTSDKVAVGLTEDQFITIPAGQYERLNISTKI 370
Query: 313 AKDKESHFIDFEKITLLKNKITK 335
+ D + +K + + I +
Sbjct: 371 SNDLQ---APIKKGDKVGDIIVQ 390
>gi|254491459|ref|ZP_05104638.1| beta-lactamase, putative [Methylophaga thiooxidans DMS010]
gi|224462937|gb|EEF79207.1| beta-lactamase, putative [Methylophaga thiooxydans DMS010]
Length = 382
Score = 239 bits (608), Expect = 7e-61, Method: Composition-based stats.
Identities = 89/326 (27%), Positives = 143/326 (43%), Gaps = 5/326 (1%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ A Y L D ++G V+AE D PAS+TKLMT+YVV L
Sbjct: 22 AGAIAPKPSAPNVAAKAYVLTDYDSGRVLAEENADERLPPASITKLMTSYVVSHELHAGN 81
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
L + IS+ A S S + + ++++ L+ +IV+S ND AVA+AE + +E+
Sbjct: 82 IQLDDEVLISEKAWRMVGSRSFIEVNTKVSVEALLRGMIVQSGNDAAVALAEHIAGSEET 141
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F Q MN ++ LG+ T++ NA G+ HYTTARD+A+LS + DFP + ++ K
Sbjct: 142 FAQMMNQYAQQLGMYGTNYRNATGLPDPDHYTTARDIAVLSAALIRDFPAHYEWYSEKEY 201
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
N N + DG+KTG T +G+ + ASA + LI+V+LG N R
Sbjct: 202 TYNDITQHNRNKLLWRDNSVDGLKTGHTEEAGYCLAASAKRSGMRLISVVLGTRSENARA 261
Query: 254 KVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
+ + L + GF + ++ + ++ T Y
Sbjct: 262 QETQKLFNYGFRFFETHQLYQANVGVTESKVWKGKQDIVELGLPTDLSVTVPRG-QYENL 320
Query: 310 MKEAKDKESHFIDFEKITLLKNKITK 335
+ ++ E L +
Sbjct: 321 VASTNLEQPIIAPIEVGAKLGEVEIR 346
>gi|307610210|emb|CBW99765.1| hypothetical protein LPW_15321 [Legionella pneumophila 130b]
Length = 430
Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 156/323 (48%), Gaps = 9/323 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A Y L+D N+G VIAE + PASLTK+MT YV+ + LK + L
Sbjct: 71 TTPAAPLLNAKAYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSGQIHLND 130
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S++A + S K+G +++++ LK +IV S ND VA+AE L +E F M
Sbjct: 131 MVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSENAFTDIM 190
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++NLG+ +HF ++ G+ YTTA+D+AIL + DFP+Y +++ K G
Sbjct: 191 NQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKWFTYNGI 250
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ PN N + DG+KTG T +G+ +V+SA + + L+AV+LG + R S
Sbjct: 251 RQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSDSVRADDSEK 310
Query: 259 LLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKE 312
LL+ GF + Y+ ++E+ + + N K
Sbjct: 311 LLNYGFRFFETHQLYKSGQSIAELPLYKGTSDKVAVGLTEDQFITIPAGQYERLNISTKI 370
Query: 313 AKDKESHFIDFEKITLLKNKITK 335
+ D + +K + + I +
Sbjct: 371 SNDLQ---APIKKGDKVGDIIVQ 390
>gi|54294448|ref|YP_126863.1| hypothetical protein lpl1517 [Legionella pneumophila str. Lens]
gi|53754280|emb|CAH15757.1| hypothetical protein lpl1517 [Legionella pneumophila str. Lens]
Length = 430
Score = 238 bits (607), Expect = 7e-61, Method: Composition-based stats.
Identities = 95/329 (28%), Positives = 158/329 (48%), Gaps = 9/329 (2%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++ A Y L+D N+G VIAE + PASLTK+MT YV+ + LK
Sbjct: 65 ITTKPFTTPAAPLLNAKAYILIDVNSGKVIAEKNSEEKLPPASLTKMMTLYVISNALKSG 124
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ L + +S++A + S K+G +++++ LK +IV S ND VA+AE L +E
Sbjct: 125 QIHLNDMVRVSRDAWQTGGSRMFIKEGDQVSVEDLLKGIIVDSGNDACVAMAEHLGGSEN 184
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F MN ++NLG+ +HF ++ G+ YTTA+D+AIL + DFP+Y +++ K
Sbjct: 185 AFTDIMNQQAQNLGMKNSHFTDSTGLPDPNLYTTAKDLAILGRALILDFPEYYDWYKQKW 244
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
G + PN N + DG+KTG T +G+ +V+SA + + L+AV+LG + R
Sbjct: 245 FTYNGIRQPNRNRLLWRDSQVDGIKTGHTNDAGYCLVSSAKRNNMRLLAVVLGEPSESVR 304
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINY 306
S LL+ GF + Y+ ++E+ + +
Sbjct: 305 ADDSEKLLNYGFRFFETHQLYKSGQSIAELPLYKGTSDKVAVGLTEDQFITIPAGQYERL 364
Query: 307 NTQMKEAKDKESHFIDFEKITLLKNKITK 335
N K + D + +K + + I +
Sbjct: 365 NISTKISNDLQ---APIKKGDKVGDIIVQ 390
>gi|92113673|ref|YP_573601.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter
salexigens DSM 3043]
gi|91796763|gb|ABE58902.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Chromohalobacter salexigens DSM 3043]
Length = 359
Score = 238 bits (607), Expect = 8e-61, Method: Composition-based stats.
Identities = 83/316 (26%), Positives = 140/316 (44%), Gaps = 3/316 (0%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ A + L+D ++G ++ E+ D PASLTK+MTAY+V +
Sbjct: 2 VPSAPELAASAWVLMDADSGKILVEHNADKELPPASLTKMMTAYIVEREIDAGNISGDDE 61
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
TIS+NA S GS +++DN L+ ++++S ND +VA+AE + +E F MN
Sbjct: 62 ATISENAWRTGGSRMFLNPGSKVSIDNLLRGVVIQSGNDASVALAEHIAGSEDAFADLMN 121
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+ + L THFMN G+ HY++A D+A+++ I D+P + + K +
Sbjct: 122 QQAARMKLEHTHFMNPTGLPHEEHYSSAHDLAVIAQHIIKDYPDHYEVYSEKYFTWNDIR 181
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
PN N + DG+KTG T A+G+ +VASA + L+AV++G R + + L
Sbjct: 182 QPNRNRLLWRDPNVDGLKTGHTEAAGYCLVASAKKDGTRLVAVVMGTDSDEARAQETQKL 241
Query: 260 LSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
LS GF ++ +E+ + + + +
Sbjct: 242 LSYGFRFFETQRLYESGAVLNTPRIWGGEKDELRLGVADDVYLTVPRGRSDELSAQLDIR 301
Query: 317 ESHFIDFEKITLLKNK 332
E+ L
Sbjct: 302 ETIEAPVSAGDRLGTL 317
>gi|307544791|ref|YP_003897270.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM
2581]
gi|307216815|emb|CBV42085.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM
2581]
Length = 419
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 89/327 (27%), Positives = 149/327 (45%), Gaps = 10/327 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + L+D +G VIA++ PD PASLTKLMTAY+V L +
Sbjct: 58 IPAPPRLAATSWILMDAGSGRVIAQHNPDERLPPASLTKLMTAYLVERELNKGNISPDDL 117
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ +S+ A S + G + + L +I+ S ND +VA+AE L + F MN
Sbjct: 118 VPVSEKAWRTGGSKMFIEVGDRVPVSELLHGIIIVSGNDASVAMAEYLAGGTEPFADIMN 177
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+ LG+ THF+N G+ HY++ARD+A+LS I D+P++ ++ K G
Sbjct: 178 QHAARLGMENTHFVNPTGLPHDNHYSSARDLALLSRHIINDYPKHYSMYRQKHFTYGGID 237
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
PN N + DG+KTG+T A+G+ +V+SA + D LI+V++G R + S L
Sbjct: 238 QPNRNSLLWRDSSVDGLKTGWTEAAGYCLVSSAKREDMRLISVVMGTDSAEARVQESQKL 297
Query: 260 LSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEV--CTTQKEIINYNTQMKEA 313
LS GF + + + + + + E V + ++
Sbjct: 298 LSYGFRYFETLRLYDKGAVLNTSRVWGGDKNELKIGVDENVFMTVPRDRNEELTAKLDIR 357
Query: 314 KDKESHFIDFEKITL----LKNKITKK 336
+D + + + L +++ K
Sbjct: 358 QDLTAPIAAGDTVGTMEVRLGDEVVGK 384
>gi|217968699|ref|YP_002353933.1| beta-lactamase [Thauera sp. MZ1T]
gi|217506026|gb|ACK53037.1| Beta-lactamase [Thauera sp. MZ1T]
Length = 375
Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats.
Identities = 92/338 (27%), Positives = 160/338 (47%), Gaps = 5/338 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR + ++ + + L+D TG +AE D PASLTKLM
Sbjct: 1 MRFLIAVLVSLFSLSALAQTVPPPALAAKAWALVDHATGQTLAEKDADARIEPASLTKLM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAY+ FS LKE + +S A S + +++D ++ +IV+S ND
Sbjct: 61 TAYITFSKLKEGSLKPDQVVPVSTKAWRMEGSRMFIEPNKPVSVDELIRGVIVQSGNDAC 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ +E+ F MN ++ LG++ THF N+ G+ YT+ARD+A+L+ I D
Sbjct: 121 VALAETIAGSEEAFAALMNREAQRLGMTNTHFTNSTGLPDPQLYTSARDLAVLASAIVRD 180
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+Y + +K G K PN N + DGMKTG T ++G+ +V++A +G++ L+
Sbjct: 181 FPEYYGLYSLKEFTYNGIKQPNRNRLLYMDPSVDGMKTGHTSSAGYCLVSTARRGERRLV 240
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEV 296
+V+LGA + R + S LL+ G+ K + ++ L+ +++
Sbjct: 241 SVVLGAASDSVRAQESLKLLNFGYQFYETVKLYSADEALSKFRVWKGKLNELPVGFTKDF 300
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
T + Q+ + ++ ++ +
Sbjct: 301 ALTVPKEAANKIQVSL-ESRQPLVAPLQRGQEVGTLTV 337
>gi|330887942|gb|EGH20603.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. mori
str. 301020]
Length = 401
Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats.
Identities = 94/342 (27%), Positives = 158/342 (46%), Gaps = 8/342 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++A+ + ++ A Y L+D +G+V+ EN D PASLTK
Sbjct: 8 KRLCLLVALIITPTVWAAEQMTPAAPQLAAKSYVLMDATSGNVLVENNGDQRLAPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++
Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ ++E
Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGTELAQATVWKGTERQVKAGLAE 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ T + + K ++ KK
Sbjct: 308 DLSMTMPKGDMKKLSASMTMN-PQLVAPIAKGDVIGKVEVKK 348
>gi|327482406|gb|AEA85716.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri DSM 4166]
Length = 385
Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats.
Identities = 88/337 (26%), Positives = 153/337 (45%), Gaps = 9/337 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L ++ +A L A Y L+D +G V+ E+ D PASLTKLMTAY+
Sbjct: 13 LTLLTVAPTVWAAQILPSAPQLAAKSYMLMDAASGEVLVEHNGDERLPPASLTKLMTAYI 72
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+++ + +T+S+ A S + + +++D+ L +I++S ND +VA+A
Sbjct: 73 ATLEIQKGQISDNDMVTVSEKAWRTGGSRMFIQVNTQVSVDDLLHGIIIQSGNDASVAMA 132
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + +E+ F MN+T++ LG+S THF+NA G+ HY++A DMA L+ I + P +
Sbjct: 133 EHIAGSEEAFADMMNSTAQRLGMSNTHFVNATGLPHPEHYSSANDMAKLARAIIYEDPAH 192
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ K K PN N + DG+KTG T +G+ +VASA++ + LI+V+
Sbjct: 193 YAIYAQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCLVASAVRDNMRLISVVF 252
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE------EVCT 298
G R + LL+ GF R + Q + + +
Sbjct: 253 GTDSEQARAAETQKLLTYGFRFFETRTFYQKGTELAEAQVWKGQQSKLKAGLAQDLTMTL 312
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ ++ M + ++ ++ K
Sbjct: 313 PRGQVEKLQAVMSFN---GTLTAPIQQGDVIGKVEVK 346
>gi|146284089|ref|YP_001174242.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri A1501]
gi|145572294|gb|ABP81400.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas stutzeri A1501]
Length = 385
Score = 235 bits (598), Expect = 9e-60, Method: Composition-based stats.
Identities = 88/337 (26%), Positives = 153/337 (45%), Gaps = 9/337 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L ++ +A L A Y L+D +G V+ E+ D PASLTKLMTAY+
Sbjct: 13 LTLLTVAPTVWAAQILPSAPQLAAKSYMLMDAASGEVLVEHNGDERLPPASLTKLMTAYI 72
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+++ + +T+S+ A S + + +++D+ L +I++S ND +VA+A
Sbjct: 73 ATLEIQKGQISDNDMVTVSEKAWRTGGSRMFIQVNTQVSVDDLLHGIIIQSGNDASVAMA 132
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + +E+ F MN+T++ LG+S THF+NA G+ HY++A DMA L+ I + P +
Sbjct: 133 EHIAGSEEAFADMMNSTAQRLGMSNTHFVNATGLPHPEHYSSANDMAKLARAIIYEDPAH 192
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ K K PN N + DG+KTG T +G+ +VASA++ + LI+V+
Sbjct: 193 YAIYAQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCLVASAVRDNMRLISVVF 252
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE------EVCT 298
G R + LL+ GF R + Q + + +
Sbjct: 253 GTDSEQARAAETQKLLTYGFRFFETRTFYQKGTELAEAQVWKGQQSKLKAGLAQDLTMTL 312
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ ++ M + ++ ++ K
Sbjct: 313 PRGQVEKLQAVMSFN---GTLTAPIQQGDVIGKVEVK 346
>gi|94501220|ref|ZP_01307742.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacter sp. RED65]
gi|94426647|gb|EAT11633.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacter sp. RED65]
Length = 380
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 89/345 (25%), Positives = 160/345 (46%), Gaps = 9/345 (2%)
Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
MR + + + + + + Y L+D N+G V+ E+ D PASLT
Sbjct: 1 MRVLIASFLFLFSTVTFSAPSIIPKPPSLAASSYILMDANSGEVLVEHNADKVLPPASLT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KLMTA++ F L L + +S A + S ++G+T+ +++ L+ +I++S N
Sbjct: 61 KLMTAFIAFEELSYGNIALDEKVRVSVKAWKAEGSRMFIREGTTVPVEDLLRGIIIQSGN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D ++A+AE + TE F MN + +LG++ + F NA G+ GH+++ARDMA L+ I
Sbjct: 121 DASIAMAEHISGTESSFADIMNQYAVSLGMTNSQFKNATGLPSEGHHSSARDMATLARAI 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ + K + + N N + DG+KTG T +G+ +V+SA D
Sbjct: 181 IFNHKQHYPIYSEKKFKYNNIEQTNRNRLLFWNDKVDGLKTGHTEEAGYCLVSSAQDEDM 240
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNK------TDRKKINYIIKDFYQQNLSNEVPN 291
LIAV++GA R + S LL+ GF ++ + QQ N
Sbjct: 241 RLIAVVMGANSERARARESNKLLTYGFRYFESHRLYESKESLQTTDVWLGQQETLNLGVK 300
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + + N + + + ++ ++ + +K + K
Sbjct: 301 EGAYITIPRGQKGNLDVEFTIDEVIKAPVLEGMEFGRIKVSLDDK 345
>gi|90022977|ref|YP_528804.1| penicillin-binding protein 6 [Saccharophagus degradans 2-40]
gi|89952577|gb|ABD82592.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Saccharophagus degradans 2-40]
Length = 393
Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats.
Identities = 94/349 (26%), Positives = 157/349 (44%), Gaps = 17/349 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
MR F+V + + +F + Y L+D +TG VI E+ D PASLT
Sbjct: 5 MRSFVVCLLATICVPVFAAQVIVPAPPELSAKAYLLIDADTGKVIVESNADEVMEPASLT 64
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLI 112
K+MT+Y+V ++ + + +S +A S S + + + L+ +I
Sbjct: 65 KMMTSYIVSEEIESGRLTEDALVLVSDDAWRRGGSASGSSTMFLDPRSEVRVIDLLRGVI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
++S ND ++A+A+ + E F MN ++ LG+++T+F NA G GH TTARD+AI
Sbjct: 125 IQSGNDASIALAQHIAGDESAFADVMNQQAQLLGMNSTNFENATGWPAEGHVTTARDLAI 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
L+ + D P++ + K + G PN N + DGMKTG T ++G+ +VASA
Sbjct: 185 LARALVNDHPEHYALYSEKYFKYNGINQPNRNRLLFRDDSVDGMKTGHTESAGYCLVASA 244
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNE 288
Q D LI+V+LG + R + S LLS GF N ++
Sbjct: 245 KQDDMRLISVVLGTKSDSARTQDSQKLLSYGFRYYKTYTLYNEGEAISDARVWKGLTDKV 304
Query: 289 VPNISEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ + V + + + E+ +L + + K
Sbjct: 305 SLTVNSDIEVTIPRGAHKSVKAVTRVDSIIEAPVAP---GQILGSLLLK 350
>gi|254427252|ref|ZP_05040959.1| D-alanyl-D-alanine carboxypeptidase family [Alcanivorax sp. DG881]
gi|196193421|gb|EDX88380.1| D-alanyl-D-alanine carboxypeptidase family [Alcanivorax sp. DG881]
Length = 386
Score = 234 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 96/345 (27%), Positives = 160/345 (46%), Gaps = 16/345 (4%)
Query: 1 MR----QFLVIIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHP 50
MR +F V A+L + A + Y L+D +G VI E+ +
Sbjct: 1 MRPQSFRFTVFALCALLGTALSLQAQAQMVPRAPQIEAKGYLLMDAASGQVIVEHNAEQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PASLTK+MTAY+V L++ IS A + S ++G+ + + + L+
Sbjct: 61 LPPASLTKMMTAYIVEEELQKGNISEKDMAPISVQAWQMGGSRMFVREGTRVPVGDLLRG 120
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+I++S ND +VA+AE + +E F MN + LG+ ++HFMNA G H+TTA+DM
Sbjct: 121 IIIQSGNDASVAMAEYIAGSEDAFADLMNQHANRLGMDSSHFMNATGWPAENHFTTAKDM 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
AIL+ I DFP + + K G N N + DG+KTG T +G+ +V+
Sbjct: 181 AILARAIVRDFPDHYDLYAKKEFTYNGITQQNRNLLLWRDPTVDGLKTGHTDEAGYCLVS 240
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLS 286
SA + + LIAV++G + R + S LL+ GF K + D +
Sbjct: 241 SAKKDNMRLIAVVMGTASESARARESQKLLTYGFRFFETYKAYSAGDVLDTVDVWMGKQD 300
Query: 287 NEVPNISEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
++E+ + ++ N ++ E+ ++ ++ L
Sbjct: 301 QLRLGLAEDLVLTIPRESHENLKAEISVTPQLEAPILEGQQYGTL 345
>gi|110834820|ref|YP_693679.1| D-alanyl-D-alanine-carboxypeptidase [Alcanivorax borkumensis SK2]
gi|110647931|emb|CAL17407.1| D-alanyl-D-alanine-carboxypeptidase [Alcanivorax borkumensis SK2]
Length = 386
Score = 234 bits (595), Expect = 2e-59, Method: Composition-based stats.
Identities = 95/349 (27%), Positives = 154/349 (44%), Gaps = 15/349 (4%)
Query: 1 MR----QFLVIIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHP 50
MR +F V+ A+ F L+ A Y L+D +G +I E D
Sbjct: 1 MRPQSFRFTVLALFALFGTAFSLLAQAQMVPRAPQIDAKGYLLMDATSGQIIVERNADQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PASLTK+MTAY+ + L++ IS A + S ++G+ + + + L+
Sbjct: 61 LPPASLTKMMTAYIAEAELQKGNISEKDMAPISVQAWQMGGSRMFVREGTRVPVGDLLRG 120
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+I++S ND +VA+AE + +E F MN + LG+ +HFMNA G H+TTA+DM
Sbjct: 121 IIIQSGNDASVAMAEYIAGSEDAFADLMNQHANRLGMDNSHFMNATGWPAENHFTTAKDM 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
AIL+ I DFP + + K G N N + DG+KTG T +G+ +V+
Sbjct: 181 AILARAIVRDFPDHYDLYAKKEFTYNGITQQNRNLLLWRDPSVDGLKTGHTDEAGYCLVS 240
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLS 286
SA + LIAV++G R + S LL+ GF K + D + +
Sbjct: 241 SAKKDGMRLIAVVMGTDSEGARARESQKLLTYGFRFFETYKAYSAGDVLDTVDVWMGEQN 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++E++ T ++ + E + + +
Sbjct: 301 QLRLGLAEDLVLTIP-RESHESLKAEISVTPQLEAPIVEGQQYGSLTVR 348
>gi|146308809|ref|YP_001189274.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina
ymp]
gi|145577010|gb|ABP86542.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Pseudomonas mendocina ymp]
Length = 386
Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats.
Identities = 88/336 (26%), Positives = 151/336 (44%), Gaps = 5/336 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
FL ++ + + + Y L+D +G V+ E+ D PASLTKLMTAY
Sbjct: 13 FLGLLTAPLAWSSQQVVPAPPQLAATSYVLMDAASGQVLVESNGDQRLPPASLTKLMTAY 72
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + + + + +S+ A S + G +++D+ L +I++S ND ++AI
Sbjct: 73 IATLEINRGQIKESDMVRVSEKAWRKGGSKMFIEVGKEVSVDDLLHGIIIQSGNDASIAI 132
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E F MN ++ LG+S THFMN+ G HY++A DMA L+ I + P
Sbjct: 133 AEHIAGSEDAFADMMNTHAQRLGMSNTHFMNSTGWPDPEHYSSAHDMAKLARAIIYEDPA 192
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ ++ K G K PN N + DG+KTG T +G+ +VASA++ Q LIA +
Sbjct: 193 HYDIYKQKEFLWNGIKQPNRNLLLWRDSTVDGLKTGHTEEAGYCLVASAVRDGQRLIAAV 252
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTT 299
G + R LL+ GF R + ++ ++E++ T
Sbjct: 253 FGTVSEQARAAEVQKLLTYGFRFFESRTFYKKGTELAQATVWKGTTHQVKAGLAEDLTMT 312
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ Q + + ++ ++ K
Sbjct: 313 LPKGQLEKLQASMSLN-PRLIAPIQQGDVIGKVEVK 347
>gi|66047588|ref|YP_237429.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas syringae pv.
syringae B728a]
gi|63258295|gb|AAY39391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas syringae pv.
syringae B728a]
Length = 395
Score = 232 bits (592), Expect = 4e-59, Method: Composition-based stats.
Identities = 93/342 (27%), Positives = 157/342 (45%), Gaps = 8/342 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK
Sbjct: 17 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKSYVLMDATSGNVLVENNGDQRLAPASLTK 76
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND
Sbjct: 77 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 136
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 137 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 196
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++
Sbjct: 197 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ ++E
Sbjct: 257 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGTELAQATVWKGTERQVKAGLAE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ T + + K ++ KK
Sbjct: 317 DLSMTMPKGDMKKLSASMTMN-PQLVAPIAKGDVIGKVEVKK 357
>gi|104783763|ref|YP_610261.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
[Pseudomonas entomophila L48]
gi|95112750|emb|CAK17478.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
(precursor) [Pseudomonas entomophila L48]
Length = 386
Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats.
Identities = 90/341 (26%), Positives = 157/341 (46%), Gaps = 8/341 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ + + + + F + Y L+D ++G+V+ EN D PASLTK
Sbjct: 8 KRLCLPVLLLITPAAFAAEQMMPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA++E + +E F MN T+ +LG++ +HFMN G+ HY++A DMA+L+ I
Sbjct: 128 ASVALSEHIAGSEDAFADMMNKTAGDLGMANSHFMNPTGLPNPEHYSSAHDMALLARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K K PN N + DG+KTG T +G+ +VASA++ Q
Sbjct: 188 NEDPAHYAIYSQKEFYWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASAVRDGQR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G +R + LL+ GF + + ++ + ++
Sbjct: 248 LIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTELTQAPVWKGATNQVKAGLAN 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ T + Q + K ++ K
Sbjct: 308 DLTMTMPKGQLKRLQASMTMN-PQLTAPIAKGDVIGKVEVK 347
>gi|212638842|ref|YP_002315362.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
WK1]
gi|212560322|gb|ACJ33377.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
WK1]
Length = 387
Score = 232 bits (591), Expect = 5e-59, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 152/349 (43%), Gaps = 13/349 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-----TNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++F +A+ +L + + + L++ +TG ++ E P PAS
Sbjct: 3 MKRFFYALAIVLLFVPIVSVHAEQPKVELATEARSAILIERDTGAILYEKNAHEPLPPAS 62
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MT ++ + + K L + S+ A+ S + G MT+D+ LK + + S
Sbjct: 63 MTKIMTMLLIMEAIDQGKLKLDERVRASEYAASMGGSQIFLEPGEEMTVDDLLKGIAIGS 122
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND +VA+AE + +E+ FV MN ++ LGL T F N G+ HY+TA DMA+++
Sbjct: 123 GNDASVALAERIAGSEEAFVHLMNEKARQLGLKHTAFENTTGLPAKNHYSTAYDMAMMAK 182
Query: 176 RIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
+ + ++ K NTN V + G DG+KTG+T + + + A+
Sbjct: 183 ELLKYDLITKYTGTYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGYTSEAKYCLTAT 242
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSN 287
A +G+ +IAV+ GA RN +L F + + + +
Sbjct: 243 AKKGNMRVIAVVFGAPTPKARNAQITKMLDYAFSHYETKPLYKKGETITMLPVSKGKKKS 302
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
SE + K+ + K KE+ +K L + KK
Sbjct: 303 VAVVTSEPISVLLKKGEKSDAVKTTWKLKETVKAPVKKGDTLGTLVVKK 351
>gi|71736558|ref|YP_276518.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557111|gb|AAZ36322.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 395
Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats.
Identities = 93/342 (27%), Positives = 157/342 (45%), Gaps = 8/342 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK
Sbjct: 17 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKSYVLMDATSGNVLVENNGDQRLAPASLTK 76
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND
Sbjct: 77 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 136
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 137 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 196
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++
Sbjct: 197 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ ++E
Sbjct: 257 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGTELAQATVWKGTERQVKAGLAE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ T + + K ++ KK
Sbjct: 317 DLSMTMPKGDMKKLSASMTMN-PQLVAPIAKGDVIGKVEVKK 357
>gi|304310091|ref|YP_003809689.1| Penicillin-binding protein 5 precursor
(D-ala-D-ala-carboxypeptidase) [gamma proteobacterium
HdN1]
gi|301795824|emb|CBL44023.1| Penicillin-binding protein 5 precursor
(D-ala-D-ala-carboxypeptidase) [gamma proteobacterium
HdN1]
Length = 385
Score = 232 bits (590), Expect = 6e-59, Method: Composition-based stats.
Identities = 83/341 (24%), Positives = 162/341 (47%), Gaps = 8/341 (2%)
Query: 4 FLVIIAMAMLSNIF-PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+ + + S L + L++ ++G V+ E+ D PASLTK+MT+
Sbjct: 10 FIGALTASNASFAAETELPTPPQLAASSWILIEPSSGQVLVEHNADEQLPPASLTKMMTS 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
YV +KE A + +S+ A S + G+ + + + ++ +I++S ND +VA
Sbjct: 70 YVAADKIKEGLAGWDDEVLVSEKAWRMGGSKMFIRVGTQVKIRDLMRGIIIQSGNDASVA 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +E+ F MN T+K +G++ TH++NA G+ HYTTARD+AIL+ + D P
Sbjct: 130 LAEHIAGSEESFADLMNQTAKRIGMTHTHYVNATGLPDPSHYTTARDLAILAQHVIFDHP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ + K K PN N + DG+KTG T +G+ +VASA + L+AV
Sbjct: 190 EDYELYSEKEFLYNNIKQPNRNLLLWRDNSVDGIKTGHTKEAGYCLVASAKRDGMRLVAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCT 298
++ R + LL+ GF + + + + + + + +++
Sbjct: 250 VMNTNSEKARASETMKLLTYGFRFYENVRSYSAGEVLAAPEIWFGSTPTVKLGLDKDLVL 309
Query: 299 TQKEIINYNTQMK---EAKDKESHFIDFEKITLLKNKITKK 336
T + + + + + ++ +++ +++ ++ K
Sbjct: 310 TIPRGTQQDVKAELDYKPLELKAPIAKGQQLGVIRVRVKDK 350
>gi|257482223|ref|ZP_05636264.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289625781|ref|ZP_06458735.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289648433|ref|ZP_06479776.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298488990|ref|ZP_07007013.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|302185158|ref|ZP_07261831.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
syringae 642]
gi|298156488|gb|EFH97585.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322699|gb|EFW78792.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330516|gb|EFW86495.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330867177|gb|EGH01886.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330871065|gb|EGH05774.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330873695|gb|EGH07844.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330987605|gb|EGH85708.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 386
Score = 232 bits (590), Expect = 7e-59, Method: Composition-based stats.
Identities = 93/342 (27%), Positives = 157/342 (45%), Gaps = 8/342 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK
Sbjct: 8 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKSYVLMDATSGNVLVENNGDQRLAPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++
Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ ++E
Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGTELAQATVWKGTERQVKAGLAE 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ T + + K ++ KK
Sbjct: 308 DLSMTMPKGDMKKLSASMTMN-PQLVAPIAKGDVIGKVEVKK 348
>gi|289675748|ref|ZP_06496638.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
syringae FF5]
gi|330895583|gb|EGH27891.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330976833|gb|EGH76865.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 386
Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats.
Identities = 93/342 (27%), Positives = 157/342 (45%), Gaps = 8/342 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK
Sbjct: 8 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKAYVLMDATSGNVLVENNGDQRLAPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++
Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ ++E
Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGTELAQATVWKGTERQVKAGLAE 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ T + + K ++ KK
Sbjct: 308 DLSMTMPKGDMKKLSASMTMN-PQLVAPIAKGDVIGKVEVKK 348
>gi|28871936|ref|NP_794555.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213968044|ref|ZP_03396190.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
tomato T1]
gi|301383639|ref|ZP_07232057.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
tomato Max13]
gi|302063161|ref|ZP_07254702.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
tomato K40]
gi|302131282|ref|ZP_07257272.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28855189|gb|AAO58250.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927387|gb|EEB60936.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
tomato T1]
gi|330873583|gb|EGH07732.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330963469|gb|EGH63729.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331014742|gb|EGH94798.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 386
Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats.
Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 8/342 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + + A Y L+D +G+V+ EN D PASLTK
Sbjct: 8 KRLCLLVPLIITPAAWAAEQMTPAAPQLAAKSYVLMDATSGNVLVENNGDQRLAPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++
Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ ++E
Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGTELAQATVWKGTERQVKAGLAE 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ T + + K ++ KK
Sbjct: 308 DLSMTMPKGDMKKLSASMTMN-PQLVAPIAKGDVIGKVEVKK 348
>gi|331011314|gb|EGH91370.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 386
Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats.
Identities = 93/342 (27%), Positives = 157/342 (45%), Gaps = 8/342 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK
Sbjct: 8 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKSYVLMDATSGNVLVENNGDQRLAPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++
Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ ++E
Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGTELAQATVWKGTERQVKAGLAE 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ T + + K ++ KK
Sbjct: 308 DLSMTMPKGDMKKLSASMTMN-PQLVAPIAKGDVIGKVEVKK 348
>gi|292490707|ref|YP_003526146.1| beta-lactamase [Nitrosococcus halophilus Nc4]
gi|291579302|gb|ADE13759.1| Beta-lactamase [Nitrosococcus halophilus Nc4]
Length = 382
Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats.
Identities = 95/336 (28%), Positives = 158/336 (47%), Gaps = 4/336 (1%)
Query: 4 FLVIIAMAMLSNIFP-FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+L+++ M P + A + Y L D TG V+AE D PAS+TKLMTA
Sbjct: 12 WLLLLFMGGTVWGQPLPIPAAPSLSAKAYILQDFATGQVLAEAQADQRVEPASITKLMTA 71
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
YVVF+ LK L + IS+ A S + + S ++++ L+ +I++S ND +VA
Sbjct: 72 YVVFAELKRGNIHLEDKVLISEKAWRTGGSRTFIEVDSRVSVETLLQGMIIQSGNDASVA 131
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + TE+ F MN ++ LG++ +HF+N+ G+ HY T RD+A L+ + DFP
Sbjct: 132 LAEYVGGTEEIFATLMNQQAQALGMTGSHFVNSTGLPHENHYMTTRDIATLARALIRDFP 191
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+Y ++ + N N + DG KTG+T A+G+ +V+SA++ LIAV
Sbjct: 192 EYYGWYSEQEFTYNNITQYNRNVLLRRDPSVDGCKTGYTEAAGYCLVSSAMREGMRLIAV 251
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEEVCTT 299
++G R + S +LL+ GF R + Q + E+ +
Sbjct: 252 VMGTKGPKIRARESLALLNYGFRFYDTRSLYAAREPVTSARVWQGANKELSLGVADDLAV 311
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + ++ + L I K
Sbjct: 312 TLQRGRWQELSSSIQLQDPITAPITEGQRLGVVIVK 347
>gi|325276744|ref|ZP_08142459.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas sp. TJI-51]
gi|324098127|gb|EGB96258.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas sp. TJI-51]
Length = 386
Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats.
Identities = 89/341 (26%), Positives = 153/341 (44%), Gaps = 8/341 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ + + + + F Y L+D ++G+V+ EN D PASLTK
Sbjct: 8 KRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA++E + +E F MN T+ +LG++ +HFMN G+ HY++A DMA+L+ I
Sbjct: 128 ASVALSEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPDHYSSAHDMAVLARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P + + K K PN N + DG+KTG T +G+ +VASA++ Q
Sbjct: 188 NVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCMVASAVRDGQR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ +++
Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQTFYQKGTELTQAPVWKGATGQVKAGLAD 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ T + + K ++ K
Sbjct: 308 DLTMTMPKG-QLKRLVATMTMNPQLTAPIAKGDVIGKVEVK 347
>gi|330969439|gb|EGH69505.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 386
Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats.
Identities = 93/342 (27%), Positives = 157/342 (45%), Gaps = 8/342 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK
Sbjct: 8 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKAYVLMDATSGNVLVENNGDQRLAPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAGDLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++
Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ ++E
Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGTELAQATVWKGTERQVKAGLAE 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ T + + K ++ KK
Sbjct: 308 DLSMTMPKGDMKKLSASMTMN-PQLVAPIAKGDVIGKVEVKK 348
>gi|330938277|gb|EGH41938.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 386
Score = 231 bits (589), Expect = 9e-59, Method: Composition-based stats.
Identities = 93/342 (27%), Positives = 157/342 (45%), Gaps = 8/342 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + ++ A Y L+D +G+V+ EN D PASLTK
Sbjct: 8 KRLCLLVPLIITPTVWAAEQMTPAAPQLAAKAYVLMDATSGNVLVENNGDQRLAPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++
Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ ++E
Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGTELAQATVWKGTERQVKAGLAE 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ T + + K ++ KK
Sbjct: 308 DLSMTMPKGDMKKLSASMTMN-PQLVAPIAKGDVIGKVEVKK 348
>gi|70732753|ref|YP_262516.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens Pf-5]
gi|68347052|gb|AAY94658.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens Pf-5]
Length = 385
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 156/340 (45%), Gaps = 7/340 (2%)
Query: 2 RQFLVIIAMAMLSNIFP--FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++ +++ + + + + Y L+D ++G+V+ EN D PASLTKL
Sbjct: 8 KRLCLLVPLIITPAAWAVEAMPSPPQLAAKSYVLMDASSGNVLVENNGDQRLPPASLTKL 67
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND
Sbjct: 68 MTAYIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDA 127
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+VA++E + +E F MN T+ +LG+S +HFMN G+ HY++A DMA+L+ I
Sbjct: 128 SVAVSEHIAGSEDAFADMMNKTATDLGMSNSHFMNPTGLPNPEHYSSAHDMAVLARAIIH 187
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++ L
Sbjct: 188 EDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRL 247
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE 295
IAV+ G R + LL+ GF + + ++ ++E+
Sbjct: 248 IAVVFGTNSEQARAAETQKLLTYGFRFFETQTFYQKGTELAQAQVWKGTTHQVKAGLAED 307
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + K ++ K
Sbjct: 308 LTMTMPKGQLKKLAASMTMN-PQLIAPIAKGDVIGKVEVK 346
>gi|330959962|gb|EGH60222.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 386
Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats.
Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 8/342 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + + A Y L+D +G+V+ EN D PASLTK
Sbjct: 8 KRLCLLVPLIITPAAWAAEQMTPAAPQLAAKAYVLMDATSGNVLVENNGDQRLAPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++
Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ ++E
Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGTELAQATVWKGTERQVKAGLAE 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ T + + K ++ KK
Sbjct: 308 DLSMTMPKGDMKKLSASMTMN-PQLVAPIAKGDVIGKVEVKK 348
>gi|254281581|ref|ZP_04956549.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[gamma proteobacterium NOR51-B]
gi|219677784|gb|EED34133.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[gamma proteobacterium NOR51-B]
Length = 381
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 84/340 (24%), Positives = 156/340 (45%), Gaps = 9/340 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M +F++++ + + + Y L+D ++G V+ E+ D PASLTK+M
Sbjct: 1 MLRFVILMMFSTSVLASSVVPAPPSIAADGYLLMDFHSGEVLVEHNADDVLPPASLTKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSN-----STFKKGSTMTLDNALKLLIVKS 115
TAY++ + + L+ + +S+ A P+ + G T+T+ K +++ S
Sbjct: 61 TAYILAEEIDAGRLSLSDEVPVSRTAWSQNPTFRGSSLMWIEPGKTVTVGELEKGIVISS 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VAIAE + +E+ F MN ++ LG++ATH++N+HG+ H T+ARD+A L+
Sbjct: 121 GNDATVAIAEHIAGSEEAFAGMMNRYAEILGMTATHYVNSHGLPNSAHVTSARDLATLAA 180
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
I D P+ ++ N N + DG+KTG+T +G+ +VASA +
Sbjct: 181 AIIRDHPERYKVYKQLSFTYNDITQYNRNHLLRDDPSVDGLKTGYTSVAGYGLVASAERD 240
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNI 292
LI+V++G+ +R + SLL+ GF + + + + L + V
Sbjct: 241 GMRLISVVMGSNSTRSRKAETRSLLNYGFRFYETVQPVVANVALASTRLWKGLDDAVAGG 300
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
E + ++ + E + ++
Sbjct: 301 VLESSAMTIPRGSAQPEVVVTFN-EPIEAPLSRGDVIGEV 339
>gi|229592798|ref|YP_002874917.1| putative cell division-like protein [Pseudomonas fluorescens SBW25]
gi|229364664|emb|CAY52594.1| putative cell division-related protein [Pseudomonas fluorescens
SBW25]
Length = 385
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 90/340 (26%), Positives = 156/340 (45%), Gaps = 7/340 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF--LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++ ++I++ + + + + + L+D +G+V+ E+ D PASLTKL
Sbjct: 8 KRTCLLISLIITPAAWAVEMVPASPQLAAKSWVLMDAASGNVLVESNGDQRLPPASLTKL 67
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND
Sbjct: 68 MTAYIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDA 127
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+VA+AE + +E F MN T +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 128 SVALAEHIAGSEDAFADMMNKTVADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIR 187
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P + + K K PN N + DG+KTG T +G+ +V+SA++ Q L
Sbjct: 188 VDPVHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGQRL 247
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE 295
IAV+ G R + LL+ GF + + ++ S ++E+
Sbjct: 248 IAVVFGTNSEQARAAETQKLLTYGFRFFETQTFYQKGAELATAPVWKGATSQVKAGLAED 307
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + K ++ K
Sbjct: 308 LTLTMPKGQLKKLAASMTMN-PQLVAPIAKGDVIGKVEVK 346
>gi|237798412|ref|ZP_04586873.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331021264|gb|EGI01321.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 386
Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats.
Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 8/342 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + + A Y L+D +G+V+ EN D PASLTK
Sbjct: 8 KRLCLLVPLIITPAAWAAEQMTPAAPQLAAKAYVLMDATSGNVLVENNGDQRLAPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++
Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ ++E
Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFYETQNFYQKGTELAQATVWKGTERQVKAGLAE 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ T + + K ++ KK
Sbjct: 308 DLSMTMPKGDMKKLSASMTMN-PQLVAPIAKGDVIGKVEVKK 348
>gi|312963236|ref|ZP_07777720.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens WH6]
gi|311282502|gb|EFQ61099.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas fluorescens WH6]
Length = 385
Score = 231 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 90/340 (26%), Positives = 156/340 (45%), Gaps = 7/340 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF--LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++ +++++ + + + + + L+D +G+V+ EN D PASLTKL
Sbjct: 8 KRTCLLLSLIITPAAWAVEMVPASPQLAAKAWVLMDAASGNVLVENNGDQRLPPASLTKL 67
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND
Sbjct: 68 MTAYIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDA 127
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+VA+AE + +E F MN T +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 128 SVALAEHIAGSEDAFADMMNKTVADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAIIR 187
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P + + K K PN N + DG+KTG T +G+ +V+SA++ Q L
Sbjct: 188 VDPVHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCMVSSAVRDGQRL 247
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE 295
IAV+ G R + LL+ GF + + ++ S ++E+
Sbjct: 248 IAVVFGTNSEQARAAETQKLLTYGFRFFETQTFYQKGAELATAPVWKGATSQVKAGLAED 307
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + K ++ K
Sbjct: 308 LTLTMPKGQLKKLAASMTMN-PQLVAPIAKGDVIGKVEVK 346
>gi|148549880|ref|YP_001269982.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida F1]
gi|148513938|gb|ABQ80798.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida F1]
Length = 403
Score = 231 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 92/341 (26%), Positives = 156/341 (45%), Gaps = 8/341 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ + + + + F Y L+D ++G+V+ EN D PASLTK
Sbjct: 25 KRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTK 84
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + + P+T+S+NA S K GS +T+ + L +I++S ND
Sbjct: 85 LMTAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 144
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA+AE + +E F MN T+ +LG++ +HFMN G+ HY++A DMA L+ I
Sbjct: 145 ASVALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMATLARAII 204
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P + + K K PN N + DG+KTG T +G+ +VASA++ Q
Sbjct: 205 NVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASAVRDGQR 264
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G +R + LL+ GF + + ++ S +++
Sbjct: 265 LIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTELTQAPVWKGATSQIKAGLAD 324
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ T + Q + K ++ K
Sbjct: 325 DLTMTMPKGQLKRLQASMTMN-PQLTAPIAKGDVIGKVEVK 364
>gi|330953021|gb|EGH53281.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas syringae Cit 7]
Length = 386
Score = 231 bits (587), Expect = 2e-58, Method: Composition-based stats.
Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 8/342 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + + A Y L+D +G+V+ EN D PASLTK
Sbjct: 8 KRLCLLVPLIITPTGWAAEQMTPAAPQLAAKAYVLMDATSGNVLVENNGDQRLAPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+TIS+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLEIRRGQIGENDPVTISENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VAI+E + +E F MN T+ +LG++ +HFMN G+ HY++A DMAIL+ I
Sbjct: 128 ASVAISEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMAILARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ P + + K G K PN N + DG+KTG T +G+ +V+SA++
Sbjct: 188 HEDPAHYAIYSQKEFFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G R + LL+ GF + + ++ ++E
Sbjct: 248 LIAVVFGTNSEQARAAETQKLLTYGFRFFETQNFYQKGTELAQATVWKGTERQVKAGLAE 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ T + + K ++ KK
Sbjct: 308 DLSMTMPKGDMKKLSASMTMN-PQLVAPIAKGDVIGKVEVKK 348
>gi|331005765|ref|ZP_08329124.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
IMCC1989]
gi|330420402|gb|EGG94709.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
IMCC1989]
Length = 386
Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats.
Identities = 91/340 (26%), Positives = 154/340 (45%), Gaps = 8/340 (2%)
Query: 2 RQFLVIIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
R L I++ +++ + + Y L+DTNTG V+ E D PAS+TK
Sbjct: 6 RSVLFILSCSVVMLSYARPVIIPAPPQLAATAYFLMDTNTGRVLVEKNADMQLPPASMTK 65
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT+Y+V S ++ +TIS A + S ++G+ +++ + L+ +I++S ND
Sbjct: 66 MMTSYIVSSEIERGSINPDDLVTISVKAWKKGGSKMFVREGTQVSIKDLLRGVIIQSGND 125
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
++A+AE + +E F MN + LG++ T F NA G GH ++ RD+AIL +
Sbjct: 126 ASIALAEHIAGSEAAFADIMNQQAALLGMTNTVFKNATGWPADGHISSVRDLAILGQALI 185
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
DFP++ + K G PN N + T DG+KTG T +GF + AS+ +
Sbjct: 186 KDFPEHYKLYSEKYFTYNGINQPNRNKLLFTDKSVDGIKTGHTEEAGFGLTASSERDGMR 245
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
L++V+ G + R S LLS GF K + ++ ++
Sbjct: 246 LVSVVTGTRSESARAAESQKLLSYGFRYYYTHKLYSKGDVVNTAVVWKGQQEEIKIGLTN 305
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
++ T + Q D E + L N +
Sbjct: 306 DIYLTVPRGSENDLQATVHID-EVIQAPIVQGQELGNVVV 344
>gi|15599194|ref|NP_252688.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1]
gi|116052037|ref|YP_789120.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa UCBPP-PA14]
gi|218889720|ref|YP_002438584.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa LESB58]
gi|254236891|ref|ZP_04930214.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa C3719]
gi|254242683|ref|ZP_04936005.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 2192]
gi|296387449|ref|ZP_06876948.1| D-alanyl-D-alanine carboxypeptidase [Pseudomonas aeruginosa PAb1]
gi|313109439|ref|ZP_07795399.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 39016]
gi|4887207|gb|AAD32234.1|AF147448_5 penicillin-binding protein 5 [Pseudomonas aeruginosa PAO1]
gi|9950191|gb|AAG07386.1|AE004817_10 D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PAO1]
gi|115587258|gb|ABJ13273.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa UCBPP-PA14]
gi|126168822|gb|EAZ54333.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa C3719]
gi|126196061|gb|EAZ60124.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 2192]
gi|218769943|emb|CAW25704.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa LESB58]
gi|310881901|gb|EFQ40495.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa 39016]
Length = 386
Score = 230 bits (585), Expect = 2e-58, Method: Composition-based stats.
Identities = 89/341 (26%), Positives = 155/341 (45%), Gaps = 8/341 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + + Y L+D +G V+ EN D PASLTK
Sbjct: 8 KRLSLLVLFIAPTAGWAAESMVPAPPQLAAKSYVLMDGESGQVLVENNGDQRLPPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + +T+S++A S K GS +++ + L +I++S ND
Sbjct: 68 LMTAYIATKEIEAGRIGENDLVTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA+AE + +E F MN T++ LGL+ +HFM+A G+ HY++ARDMA+L+ I
Sbjct: 128 ASVALAEHIAGSEDAFADMMNTTAQKLGLTNSHFMDATGLPNPDHYSSARDMAVLARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P + + K K PN N + DG+KTG T +G+ +VASA++ Q
Sbjct: 188 YGEPSHYAIYAQKEFLWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCLVASAVRDGQR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
+IAV+ G R + LL+ GF R + ++ + ++E
Sbjct: 248 MIAVVFGTNSEQARAAETQKLLTYGFRFFESRNFYKKGTELTKGLVWKGSEHEVKAGLAE 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ T Q + ++ ++ K
Sbjct: 308 DLTMTLPRGQMQKLQASMVLE-PQLMAPIQQGQVIGKVEVK 347
>gi|254784818|ref|YP_003072246.1| penicillin-binding protein 6 [Teredinibacter turnerae T7901]
gi|237684996|gb|ACR12260.1| penicillin-binding protein 6 [Teredinibacter turnerae T7901]
Length = 390
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 90/338 (26%), Positives = 158/338 (46%), Gaps = 11/338 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+++ + + Y L+D +TG VI E+ D PASLTK+MT+Y
Sbjct: 15 LFILVTPMAANASQVIIPAPPQLAATAYLLIDADTGKVIVEHNADEQLPPASLTKMMTSY 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN-----STFKKGSTMTLDNALKLLIVKSAND 118
+V + + T + +S +A + + S + + + L+ +I++S ND
Sbjct: 75 IVSEEIYAGRLQETDLVRVSDDAWRRGGAKSGSSTMFLEARSEVPVIDMLRGVIIQSGND 134
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
++A+A+ + +E+ F + MN ++ LG++ +HF NA G GH TTARD+AIL+ +
Sbjct: 135 ASIALAQHIAGSEEAFAEIMNQQAQLLGMTNSHFRNATGWPAEGHLTTARDLAILAKALI 194
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P++ + K + G PN N + T DG+KTG T A+G+ +VASA +
Sbjct: 195 NDHPKHYALYSEKHFKHNGISQPNRNKLLFTDNTVDGIKTGHTEAAGYCLVASAKRDGMR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LI+V++GA N R S LL+ GF K + + + + V I
Sbjct: 255 LISVVMGAKSENARAAESKKLLAYGFRYYQTHKLYSAGDELGSARVWGGDPKELVLTIDH 314
Query: 295 EV--CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ + N ++ + E+ + + LK
Sbjct: 315 DILATIPRGGAKNVKAAIETNANIEAPIAKHQPLGKLK 352
>gi|77166090|ref|YP_344615.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosococcus oceani ATCC
19707]
gi|254435823|ref|ZP_05049330.1| D-alanyl-D-alanine carboxypeptidase family [Nitrosococcus oceani
AFC27]
gi|76884404|gb|ABA59085.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Nitrosococcus oceani ATCC 19707]
gi|207088934|gb|EDZ66206.1| D-alanyl-D-alanine carboxypeptidase family [Nitrosococcus oceani
AFC27]
Length = 382
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 91/319 (28%), Positives = 151/319 (47%), Gaps = 3/319 (0%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + Y L D TG V+AE+ D PAS+TKLMTAYVVF LK+ + L
Sbjct: 28 PIPAPPSLSAKAYLLQDFATGRVLAESQADERIEPASITKLMTAYVVFKELKQGRIHLAD 87
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ IS+ A S + + + + ++ +K +I++S ND +VA+AE + TE+ F M
Sbjct: 88 EVLISEKAWRTGGSRTFIEVNTRVPVETLIKGMIIQSGNDASVALAEHVGGTEEIFAALM 147
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG++ +HF+N+ G+ HY TARD+A L I DFP+Y ++ + G
Sbjct: 148 NQQAQLLGMTGSHFVNSTGLPHSNHYMTARDIATLGRAIIRDFPKYYSWYSEQAFTYNGI 207
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
N N + DG KTG T ++G+ + +SA++ LIAV++G R + S +
Sbjct: 208 TQYNRNLLLRRDSSVDGFKTGHTNSAGYCLASSAMRDGMRLIAVVMGTGSPKIRAQESLA 267
Query: 259 LLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
LL+ GF R + K Q + E+P + + + + +
Sbjct: 268 LLNYGFRFYDTRSIYAAKEAVTKVRVWQGANKELPLGLVDDLSVTLQRGRWEELSSSLRV 327
Query: 316 KESHFIDFEKITLLKNKIT 334
+ + + L
Sbjct: 328 QNTITAPVTEGQNLGIVTV 346
>gi|152984820|ref|YP_001346496.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PA7]
gi|150959978|gb|ABR82003.1| D-ala-D-ala-carboxypeptidase [Pseudomonas aeruginosa PA7]
Length = 386
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 89/341 (26%), Positives = 155/341 (45%), Gaps = 8/341 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++ + + + Y L+D +G V+ EN D PASLTK
Sbjct: 8 KRLSLLVLFIAPTAGWAAESMVPAPPQLAAKSYVLMDGESGQVLVENNGDQRLPPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + +T+S++A S K GS +++ + L +I++S ND
Sbjct: 68 LMTAYIATKEIEAGRIGENDLVTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA+AE + +E F MN T++ LGL+ +HFM+A G+ HY++ARDMA+L+ I
Sbjct: 128 ASVALAEHIAGSEDAFADMMNTTAQKLGLTNSHFMDATGLPNPDHYSSARDMAVLARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P + + K K PN N + DG+KTG T +G+ +VASA++ Q
Sbjct: 188 YGEPSHYAIYAQKEFLWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCLVASAVRDGQR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
+IAV+ G R + LL+ GF R + ++ + ++E
Sbjct: 248 MIAVVFGTNSEQARAAETQKLLTYGFRFFESRNFYKKGTELTKGLVWKGSEHEVKAGLAE 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ T Q + ++ ++ K
Sbjct: 308 DLTMTLPRGQMQKLQASMVLE-PQLMAPIQQGQVIGKVEVK 347
>gi|26991483|ref|NP_746908.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida
KT2440]
gi|24986562|gb|AAN70372.1|AE016679_4 D-alanyl-D-alanine carboxypeptidase [Pseudomonas putida KT2440]
Length = 386
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 92/341 (26%), Positives = 156/341 (45%), Gaps = 8/341 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ + + + + F Y L+D ++G+V+ EN D PASLTK
Sbjct: 8 KRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + + P+T+S+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA+AE + +E F MN T+ +LG++ +HFMN G+ HY++A DMA L+ I
Sbjct: 128 ASVALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPHPEHYSSAHDMATLARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P + + K K PN N + DG+KTG T +G+ +VASA++ Q
Sbjct: 188 NVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASAVRDGQR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G +R + LL+ GF + + ++ S +++
Sbjct: 248 LIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTELTQAPVWKGATSQVKAGLAD 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ T + Q + K ++ K
Sbjct: 308 DLTMTMPKGQLKRLQASMTMN-PQLTAPIAKGDVIGKVEVK 347
>gi|300113196|ref|YP_003759771.1| beta-lactamase [Nitrosococcus watsonii C-113]
gi|299539133|gb|ADJ27450.1| Beta-lactamase [Nitrosococcus watsonii C-113]
Length = 389
Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats.
Identities = 91/320 (28%), Positives = 152/320 (47%), Gaps = 3/320 (0%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + Y L D TG V+AE+ D PAS+TKLMTAYVVF LK+ + L
Sbjct: 35 PIPAPPSLSAKAYLLQDFATGRVLAEHQADERIEPASITKLMTAYVVFKELKQGRIHLAD 94
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ IS+ A S + + + + ++ +K +I++S ND +VA+AE + TE+ F M
Sbjct: 95 EVLISEKAWRTGGSRTFIEVNTRVPVETLIKGMIIQSGNDASVALAEYVGGTEEIFAALM 154
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG++ +HF+N+ G+ HY TARD+A L I DFP+Y ++ + G
Sbjct: 155 NQQAQLLGMTGSHFVNSTGLPHENHYMTARDIATLGRAIILDFPKYYDWYSEQAFTYNGI 214
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
N N + DG KTG T ++G+ + +SA++ LIAV++G R + S +
Sbjct: 215 TQYNRNLLLRRDSSVDGFKTGHTNSAGYCLASSAMRDGMRLIAVVMGTGSPKIRMQESLA 274
Query: 259 LLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
LL+ GF R + K Q + E+P + + + + +
Sbjct: 275 LLNYGFRFYDTRSIYAAKEAVTKVRVWQGANKELPLGLTDDLSVTLQRGRWEELSSSVRV 334
Query: 316 KESHFIDFEKITLLKNKITK 335
+ + + L +
Sbjct: 335 QNTITAPVSEGQNLGIVTVR 354
>gi|120555321|ref|YP_959672.1| Serine-type D-Ala-D-Ala carboxypeptidase [Marinobacter aquaeolei
VT8]
gi|120325170|gb|ABM19485.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Marinobacter aquaeolei VT8]
Length = 391
Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats.
Identities = 87/337 (25%), Positives = 154/337 (45%), Gaps = 9/337 (2%)
Query: 2 RQFLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
R ++ ++ ++S + + L+D +G VI E+ + PASLT
Sbjct: 12 RTLFLVFSLLLMSGQASAQAVLIPSPPQIAGSSWVLMDPLSGRVIMEHNSNERLPPASLT 71
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MTAY+V L E + ++ + IS A S + ++G+++++++ LK +I++S N
Sbjct: 72 KMMTAYIVERELDEGRISMSDMVPISVKAWRTEGSRTFVQEGTSVSVEDLLKGVIIQSGN 131
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D +VA+AE + +E FV MN ++ LG+ THF NA G+ H++TA D+A+L+ I
Sbjct: 132 DASVALAEFVAGSEGAFVDIMNQQAQLLGMKDTHFENATGLPSADHFSTAYDLAVLARHI 191
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D+P+ + K + PN N + DG+KTG T +G+ +VASA +G+
Sbjct: 192 IQDYPENYPLYAQKHFTYNNIRQPNRNSLLWRDDSVDGLKTGHTEEAGYCLVASAKRGET 251
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNIS 293
LIA ++G R + +L+ GF + + + +
Sbjct: 252 RLIATVMGTSSSEARAQEVQKMLNYGFRYFETERLFRAGQELMASRVWGGQADEVSVGMP 311
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
E+V T + D + L
Sbjct: 312 EDVYVTIPRGSREQLESVVDLDSV-IKAPIKVGDELG 347
>gi|313500782|gb|ADR62148.1| DacA [Pseudomonas putida BIRD-1]
Length = 386
Score = 229 bits (582), Expect = 6e-58, Method: Composition-based stats.
Identities = 92/341 (26%), Positives = 156/341 (45%), Gaps = 8/341 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ + + + + F Y L+D ++G+V+ EN D PASLTK
Sbjct: 8 KRLCLPVLLLITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + + P+T+S+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLDIRRGQIGESDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA+AE + +E F MN T+ +LG++ +HFMN G+ HY++A DMA L+ I
Sbjct: 128 ASVALAEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPHPEHYSSAHDMATLARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P + + K K PN N + DG+KTG T +G+ +VASA++ Q
Sbjct: 188 NVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASAVRDGQR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G +R + LL+ GF + + ++ S +++
Sbjct: 248 LIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTELTQAPVWKGATSQIKAGLAD 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ T + Q + K ++ K
Sbjct: 308 DLTMTMPKGQLKRLQASMTMN-PQLTAPIAKGDVIGKVEVK 347
>gi|170719804|ref|YP_001747492.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida W619]
gi|169757807|gb|ACA71123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida W619]
Length = 386
Score = 229 bits (582), Expect = 6e-58, Method: Composition-based stats.
Identities = 93/341 (27%), Positives = 156/341 (45%), Gaps = 8/341 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ + + + + F + Y L+D ++G+V+ EN D PASLTK
Sbjct: 8 KRLCLPVLLMITPAAFAAEQMMPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA+AE + +E F MN T+ +LG+S +HFMN G+ HY++A DMA L+ I
Sbjct: 128 ASVALAEHIAGSEDAFADMMNKTAADLGMSNSHFMNPTGLPHPDHYSSAHDMATLARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P + + K K PN N + DG+KTG T +G+ +VASA++ Q
Sbjct: 188 NVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTEEAGYCMVASAVRDGQR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G +R + LL+ GF + + ++ S +++
Sbjct: 248 LIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTELTQAPVWKGATSIVKAGLAD 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ T + Q + K ++ K
Sbjct: 308 DLTLTMPKGQMKRLQASMTMN-PQLTAPIAKGDVIGKVEVK 347
>gi|167035845|ref|YP_001671076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida GB-1]
gi|166862333|gb|ABZ00741.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas putida GB-1]
Length = 386
Score = 229 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 91/341 (26%), Positives = 155/341 (45%), Gaps = 8/341 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ + + + + F Y L+D ++G+V+ EN D PASLTK
Sbjct: 8 KRLCLPVLLMITPAAFAAEQMTPAPPQLAAKSYVLMDASSGNVLVENNGDERLPPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAY+ ++ + P+T+S+NA S K GS +T+ + L +I++S ND
Sbjct: 68 LMTAYIATLDIRRGQIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA++E + +E F MN T+ +LG++ +HFMN G+ HY++A DMA L+ I
Sbjct: 128 ASVALSEHIAGSEDAFADMMNKTAADLGMTNSHFMNPTGLPNPEHYSSAHDMATLARAII 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
T P + + K K PN N + DG+KTG T +G+ +VASA++ Q
Sbjct: 188 TVDPAHYAIYSQKEFFWNNIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVASAVRDGQR 247
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LIAV+ G +R + LL+ GF + + ++ +++
Sbjct: 248 LIAVVFGTNSEQSRAAETQKLLTYGFRFFETQTFYQKGTELTQAPVWKGATGQIKAGLAD 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ T + Q + K ++ K
Sbjct: 308 DLTMTMPKGQLKRLQASMTMN-PQLTAPIAKGDVIGKVEVK 347
>gi|311109424|ref|YP_003982277.1| D-alanyl-D-alanine carboxypeptidase [Achromobacter xylosoxidans A8]
gi|310764113|gb|ADP19562.1| D-alanyl-D-alanine carboxypeptidase DacC 2 [Achromobacter
xylosoxidans A8]
Length = 362
Score = 228 bits (581), Expect = 8e-58, Method: Composition-based stats.
Identities = 95/324 (29%), Positives = 158/324 (48%), Gaps = 6/324 (1%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A T + ++D N+G +A + PD PASLTK+MTAYVVF+ L EK+ L
Sbjct: 8 SAVPAPTIAAKAWIVMDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALDEKRLTLEQ 67
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S+ A S + +T+D + +IV+S ND +VA+AE++ +E F M
Sbjct: 68 TVPVSERAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSEASFASLM 127
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG+ THFMNA G+ H T+ RD+AILS + TD P + HY++ K
Sbjct: 128 NQEAERLGMRNTHFMNATGLPDPQHMTSTRDLAILSSHLITDHPDHFHYYKQKSYTYNKI 187
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
PN N + DGMKTG T ++G+ +V++A++GD+ ++ V++G TR + S
Sbjct: 188 TQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAVRGDRRILVVVVGTDSEATRAEESLK 247
Query: 259 LLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKE 312
LL+ F N K + I + + V + + + + +
Sbjct: 248 LLNWSFQNFDTVKLFDKSQPGIDARVWEGTAESVKLGPPNPVSIAVPRGKAGDLKPVAQR 307
Query: 313 AKDKESHFIDFEKITLLKNKITKK 336
+ +++ L+ + K
Sbjct: 308 TDPLIAPLAKGQQVGTLQFTLDGK 331
>gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
Liberibacter asiaticus str. psy62]
gi|254040112|gb|ACT56908.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
Liberibacter asiaticus str. psy62]
Length = 336
Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats.
Identities = 336/336 (100%), Positives = 336/336 (100%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM
Sbjct: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA
Sbjct: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD
Sbjct: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI
Sbjct: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ
Sbjct: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK
Sbjct: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
>gi|293602524|ref|ZP_06684970.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii
ATCC 43553]
gi|292819286|gb|EFF78321.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii
ATCC 43553]
Length = 394
Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats.
Identities = 94/324 (29%), Positives = 160/324 (49%), Gaps = 6/324 (1%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A T + ++D N+G +A + PD PASLTK+MTAYVVF+ L+EK+ L
Sbjct: 40 SAVPAPTIAAKAWIVIDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALEEKRLTLEQ 99
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S++A S + +T+D + +IV+S ND +VA+AE++ +E F M
Sbjct: 100 TVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALM 159
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG+ THFMNA G+ H T+ RD+A LS + TD P + HY++ K
Sbjct: 160 NQEAERLGMKNTHFMNATGLPDPQHVTSTRDLATLSSHLITDHPDFFHYYKQKSYTYNKI 219
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
PN N + DGMKTG T ++G+ +V++A++GD+ ++ V++G TR + S
Sbjct: 220 TQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGDRRILVVVVGTDSEATRAEESLK 279
Query: 259 LLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKE 312
LL+ F N K + I + + V + + + + + +
Sbjct: 280 LLNWSFQNFDTVKLFDKSQPGIDARVWEGTAENVKLGPPKPVSIAVPRGKAGDLKPVAQR 339
Query: 313 AKDKESHFIDFEKITLLKNKITKK 336
+ +++ L+ + K
Sbjct: 340 TDPLIAPLAKGQQVGTLQFTLDGK 363
>gi|302389828|ref|YP_003825649.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
oceani DSM 16646]
gi|302200456|gb|ADL08026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
oceani DSM 16646]
Length = 390
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 90/345 (26%), Positives = 158/345 (45%), Gaps = 10/345 (2%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
R+ ++ + +S F + K P L+D TG V+ E PAS+TK+M
Sbjct: 11 RKIALLSLIFFISVNFTVYAQPLPEIKSPSAILIDAGTGTVLYEKNAHEKLEPASITKIM 70
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T V +++ K LT + IS+ A + S G TL+ LK + + SAND +
Sbjct: 71 TLLVALEAIEQGKVKLTDKVKISERAWKTGGSQVFLGPGEEQTLETLLKCITIASANDAS 130
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + + + FV+ MN+ +K LG++ T+F N HG+ HYTTA D+A++S +
Sbjct: 131 VAVAEYIGGSVEGFVKMMNDKAKALGMNNTNFTNPHGLSDPNHYTTAYDIALMSRELVKY 190
Query: 181 FP------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
++ Y + E + NTN +G + G DG+KTGF +G+ SA +
Sbjct: 191 PKFFEWSTVWIDYLEHTDKEREATMLANTNKLLGKYEGLDGLKTGFHAKAGYCFAGSAKR 250
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPN 291
GD LI+V+L + R + + LL GF + + + + ++ + EV
Sbjct: 251 GDLRLISVVLNSPSSAERFEDTKKLLDYGFGRYSSVQVAKKNSVLKRLPVEKGVKKEVDV 310
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ + + E + + + + + I ++
Sbjct: 311 VASDDLSILVEKGKEGAIKTRLELPDKIYAPVVRGQKVGKLIAEQ 355
>gi|77461187|ref|YP_350694.1| penicillin-binding protein 6 [Pseudomonas fluorescens Pf0-1]
gi|77385190|gb|ABA76703.1| putative cell division-related protein [Pseudomonas fluorescens
Pf0-1]
Length = 385
Score = 227 bits (579), Expect = 1e-57, Method: Composition-based stats.
Identities = 92/327 (28%), Positives = 149/327 (45%), Gaps = 5/327 (1%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + Y L+D N+G+V+ EN D PASLTKLMTAY+ ++
Sbjct: 21 AAFAAEMMPSPPQLAAKSYVLMDANSGNVLVENNGDQRLPPASLTKLMTAYIATLEIRRG 80
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ P+T+S+NA S K GS +T+ + L +I++S ND +VA+AE + +E
Sbjct: 81 QIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVAVAEHIAGSED 140
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F MN T +LG++ THFMN G+ HY++A DMAIL+ I + P + + K
Sbjct: 141 AFADLMNKTVADLGMTNTHFMNPTGLPNPEHYSSAHDMAILARAIIHEDPAHYAIYSQKE 200
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
G K PN N + DG+KTG T +G+ +V+SA++ LIAV+ G R
Sbjct: 201 FFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTNSEVAR 260
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ LL+ GF + + ++ S +++++ T +
Sbjct: 261 AAETQKLLTYGFRFFETQTFYQKGTELAQAPVWKGTTSQVKAGLAQDLTMTLPKGQLKKL 320
Query: 309 QMKEAKDKESHFIDFEKITLLKNKITK 335
+ K ++ K
Sbjct: 321 AASMTMN-PQLTAPIAKGDVIGKVEVK 346
>gi|114330774|ref|YP_746996.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas eutropha
C91]
gi|114307788|gb|ABI59031.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Nitrosomonas eutropha C91]
Length = 380
Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats.
Identities = 94/336 (27%), Positives = 159/336 (47%), Gaps = 5/336 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M+QF++ + + M + +TL D ++G +A + P +PASLTKLM
Sbjct: 8 MKQFILFLFLLMPVFPAWSQQPELSIAAKSFTLTDFHSGQTLASSNPHERLDPASLTKLM 67
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYVVFS LK+++ L + +SK A S + +T+D + +IV+S ND
Sbjct: 68 TAYVVFSALKQERIKLDQVVPVSKKAWRMAGSRMFIEPNKPVTVDELIHGVIVQSGNDAC 127
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + +E V MN +K LG+ THF N+ G+ HY+TA D+A+L+ I D
Sbjct: 128 VALAELIAGSEDLLVHMMNEEAKRLGMHNTHFTNSTGLTHPDHYSTANDLALLAGAIIRD 187
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+Y + ++ G N N + T DGMKTG+T A+G+ +V SA + + LI
Sbjct: 188 FPEYYPLYSLREYTYNGITQQNRNRLLWTDPNVDGMKTGWTEAAGYCLVTSAKRDHRRLI 247
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEV 296
+V++G N R+ S LL+ GF ++ + ++++
Sbjct: 248 SVVMGTASPNARSIESQRLLNYGFQFFDTAHPYKKNQPVANVQIWKGTQNKIKVGFNQDI 307
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++ ++ +
Sbjct: 308 YFSLPKG-KVEGVKARMEYRQPLIAPIDQGQEIGKV 342
>gi|149377633|ref|ZP_01895371.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter algicola DG893]
gi|149358106|gb|EDM46590.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter algicola DG893]
Length = 388
Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats.
Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 3/335 (0%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+++ ++ + + Y L+D +G VI E PASLTK+MTAY
Sbjct: 15 LLILLPAMPVAAQAVLIPSSPQIAASSYILMDPLSGRVIMEENSHERLPPASLTKMMTAY 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V L E + L+ + IS NA S + K+G+ ++++N LK +I++S ND +VA+
Sbjct: 75 IVERELDEGRISLSDMVPISVNAWRTEGSRTFVKEGTEVSVENLLKGVIIQSGNDASVAL 134
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E FV MN ++ LG++ + F NA G+ H++TA D+A+L+ I D+P+
Sbjct: 135 AEYIAGSEGAFVDIMNQQAQILGMNESSFANATGLPAPDHFSTAYDLALLAKAIINDYPE 194
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ K + PN N + DG+KTG T +G+ +VASA + D LIAV+
Sbjct: 195 NYPLYAQKHFTYNNIRQPNRNSLLWRDDSVDGLKTGHTEEAGYCLVASAKRNDTRLIAVV 254
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEEVCTTQ 300
+G ++R + +L+ GF + +++ S+ + +
Sbjct: 255 MGTDSTSSRAQEVQKMLNYGFRYYQSERLFRTGQELLEARVWGGASDSLSVGLTDDVYVT 314
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ ++ + L K
Sbjct: 315 IPRGSRDSLESTVELDSVIKAPISMGDELGRVTVK 349
>gi|33591361|ref|NP_879005.1| putative penicillin-binding protein precursor [Bordetella pertussis
Tohama I]
gi|33599159|ref|NP_886719.1| putative penicillin-binding protein precursor [Bordetella
bronchiseptica RB50]
gi|33571003|emb|CAE40482.1| putative penicillin-binding protein precursor [Bordetella pertussis
Tohama I]
gi|33575205|emb|CAE30668.1| putative penicillin-binding protein precursor [Bordetella
bronchiseptica RB50]
gi|332380762|gb|AEE65609.1| putative penicillin-binding protein precursor [Bordetella pertussis
CS]
Length = 418
Score = 227 bits (577), Expect = 2e-57, Method: Composition-based stats.
Identities = 93/318 (29%), Positives = 154/318 (48%), Gaps = 5/318 (1%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
T + +D N+G V+A + D PASLTK+MTAYVVF+ L+EK+ L
Sbjct: 64 AAVPVPTIAAKAWITVDVNSGQVLAASNADMKVEPASLTKIMTAYVVFNALQEKRLTLEQ 123
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S++A S + +T+D + +IV+S ND +VA+AE++ +E F M
Sbjct: 124 QVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALM 183
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG+ THFMN+ G+ H TTARD+A L+ + +D+P Y HY++ K
Sbjct: 184 NQEAQRLGMRNTHFMNSTGLPDPQHVTTARDLATLAAHLISDYPDYYHYYKQKSYTYNKI 243
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
PN N + DGMKTG T ++G+ +V++A++GD+ ++ V++GA TR + S
Sbjct: 244 TQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGDRRILTVLVGADSEATRAEESLK 303
Query: 259 LLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
LL+ F N K + + ++ + N V + +
Sbjct: 304 LLNWSFQNFDTVKLYDQSQPGLDARVWEGKVENVKLGPPNPVWLAVPRGKAAEIKPVAQR 363
Query: 315 DKESHFIDFEKITLLKNK 332
+ K +
Sbjct: 364 T-DPLVAPLTKGQQVGTL 380
>gi|258544105|ref|ZP_05704339.1| serine-type D-Ala-D-Ala carboxypeptidase [Cardiobacterium hominis
ATCC 15826]
gi|258520658|gb|EEV89517.1| serine-type D-Ala-D-Ala carboxypeptidase [Cardiobacterium hominis
ATCC 15826]
Length = 374
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 104/342 (30%), Positives = 160/342 (46%), Gaps = 8/342 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+R F +IIA +F A + Y L+D +G + D PAS+TKLM
Sbjct: 5 LRLFTLIIAAVYSGVVFAQ--AAPELPVKSYILMDAASGQTLVGKNADEKLPPASITKLM 62
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAY+V L K + TPIT+S+NA + S + + +++ L+ LIV+S ND A
Sbjct: 63 TAYLVVEALDSGKLTMETPITVSQNAYKQEGSRMFIEVNKQVRVEDLLQGLIVQSGNDAA 122
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+AE L + + F MN + LG+ TH+ N G+ HYTTARD+AILS I D
Sbjct: 123 MALAEYLGGSTEGFTGMMNRKAAELGMKDTHYTNPTGLPDPQHYTTARDIAILSRHIIND 182
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
PQY HY+ K K N N + DG+KTG T +G+ + +S +GD I
Sbjct: 183 HPQYYHYYGQKSYTYNKIKQDNRNRLLWRNASIDGLKTGHTKEAGYCLASSEKRGDIRFI 242
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLS--NEVPNISE 294
AV+LGA + R S +L + GF + + K Y+ + N P
Sbjct: 243 AVVLGADKESDRYDASQALFNYGFAQFEEAVVLQAGQKLATAPVYKGKTNEVNVRPQHEV 302
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ E + + + +++ ++ +I K
Sbjct: 303 KLLLPVGERSKAVAALDLQTPLVAPIREGQELGTIRIRIGDK 344
>gi|56477153|ref|YP_158742.1| putative penicillin-binding protein [Aromatoleum aromaticum EbN1]
gi|56313196|emb|CAI07841.1| putative penicillin-binding protein [Aromatoleum aromaticum EbN1]
Length = 401
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 93/336 (27%), Positives = 151/336 (44%), Gaps = 5/336 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR F+V++ + A T + L+D TG V+A PD PASLTKLM
Sbjct: 27 MRLFIVLLLALLAFPASAQNVPAPTLAAKSWLLMDHATGQVLAAQEPDARIEPASLTKLM 86
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAY+ F+ LK L + +S A S + +T+ +I++S ND
Sbjct: 87 TAYLTFAALKNGTITLDQTVPVSNKAWRSEGSRMFIEPNRPVTVGELTSGMIIQSGNDAC 146
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE L +E+ F MN ++ LG+ THF N+ G+ YTTARD+ +L+ I D
Sbjct: 147 VALAELLAGSEEAFAHMMNAEAQRLGMKNTHFTNSTGLPDPQLYTTARDLGLLAAAIVRD 206
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+Y Y+ K PN N + DG+KTG T ++G+ +++SA +G + LI
Sbjct: 207 FPEYYRYYSQKEYTYNKITQPNRNRLLWLDTTVDGLKTGHTSSAGYCLISSAQRGPRRLI 266
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEV 296
+V+LG R + S LL+ GF K + + ++ + +
Sbjct: 267 SVMLGTDSDTIRAQESLKLLNYGFQFHDTVKLYSADQELSRFQVWKGQADDVAVGFLGDF 326
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + + ++ +K +
Sbjct: 327 VMSLPKGQSEKIEASLV-SQQPVIAPIQKGQPIGTL 361
>gi|107103514|ref|ZP_01367432.1| hypothetical protein PaerPA_01004584 [Pseudomonas aeruginosa PACS2]
Length = 359
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 89/320 (27%), Positives = 148/320 (46%), Gaps = 5/320 (1%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ Y L+D +G V+ EN D PASLTKLMTAY+ ++ +
Sbjct: 2 VPAPPQLAAKSYVLMDGESGQVLVENNGDQRLPPASLTKLMTAYIATKEIEAGRIGENDL 61
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+T+S++A S K GS +++ + L +I++S ND +VA+AE + +E F MN
Sbjct: 62 VTVSEHAWRTGGSRMFIKVGSQVSVSDLLHGIIIQSGNDASVALAEHIAGSEDAFADMMN 121
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
T++ LGL+ +HFM+A G+ HY++ARDMA+L+ I P + + K K
Sbjct: 122 TTAQKLGLTNSHFMDATGLPNPDHYSSARDMAVLARAIIYGEPSHYAIYAQKEFLWNNIK 181
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
PN N + DG+KTG T +G+ +VASA++ Q +IAV+ G R + L
Sbjct: 182 QPNRNLLLWRDKTVDGLKTGHTDEAGYCLVASAVRDGQRMIAVVFGTNSEQARAAETQKL 241
Query: 260 LSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
L+ GF R + ++ + ++E++ T Q +
Sbjct: 242 LTYGFRFFESRNFYKKGTELTKGLVWKGSEHEVKAGLAEDLTMTLPRGQMQKLQASMVLE 301
Query: 316 KESHFIDFEKITLLKNKITK 335
++ ++ K
Sbjct: 302 -PQLMAPIQQGQVIGKVEVK 320
>gi|88705586|ref|ZP_01103296.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
[Congregibacter litoralis KT71]
gi|88700099|gb|EAQ97208.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
[Congregibacter litoralis KT71]
Length = 372
Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats.
Identities = 89/332 (26%), Positives = 144/332 (43%), Gaps = 10/332 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
M + + Y L+D N+G V+ E+ D PASLTKLMTAYV+ S ++
Sbjct: 1 MAVSAQNIVPAPPEVAARAYLLVDANSGAVLVESNADEQLPPASLTKLMTAYVLASEIEA 60
Query: 72 KKAMLTTPITISKNASEYPPSN-----STFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ +T+S+NA P + +T+ + +++ S ND VA+AE
Sbjct: 61 GRVSRDDQVTVSRNAWSQNPVFNGSSLMWIEPRKPVTIGQLEQGVVISSGNDATVAVAEH 120
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E F MN + LGL T+F N+HG+ H TTARD+A L+ I FP++
Sbjct: 121 IAGSEAAFADLMNKHAAELGLHGTYFANSHGLPHPQHLTTARDLATLAKNIIARFPEHYK 180
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ + K N N +G DG+KTG+T +G+ +VASA + LI+V++G
Sbjct: 181 VYSQRDYTYNDIKQYNRNKLLGEDPSVDGLKTGYTREAGYGLVASAERNGMRLISVVMGT 240
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKD-FYQQNLSNEVPNISEEVCTTQKE 302
R + + SLL+ GF + + K ++ I+++V T
Sbjct: 241 ESTRARARETRSLLNYGFRFYETDVMVAGAEELEKPRVWKGVADYVSVGIADDVVMTLPR 300
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
N + + L
Sbjct: 301 GKRNNLVRELVLM-DPISAPLAVGDALGELTL 331
>gi|33594884|ref|NP_882527.1| putative penicillin-binding protein precursor [Bordetella
parapertussis 12822]
gi|33564960|emb|CAE39907.1| putative penicillin-binding protein precursor [Bordetella
parapertussis]
Length = 418
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 93/318 (29%), Positives = 154/318 (48%), Gaps = 5/318 (1%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
T + +D N+G V+A + D PASLTK+MTAYVVF+ L+EK+ L
Sbjct: 64 AAVPVPTIAAKAWITVDVNSGQVLAASNADMKVEPASLTKIMTAYVVFNALQEKRLTLEQ 123
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S++A S + +T+D + +IV+S ND +VA+AE++ +E F M
Sbjct: 124 QVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSESAFAALM 183
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG+ THFMN+ G+ H TTARD+A L+ + +D+P Y HY++ K
Sbjct: 184 NQEAQRLGMRNTHFMNSTGLPDPQHVTTARDLATLAVHLLSDYPDYYHYYKQKSYTYNKI 243
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
PN N + DGMKTG T ++G+ +V++A++GD+ ++ V++GA TR + S
Sbjct: 244 TQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGDRRILTVLVGADSEATRAEESLK 303
Query: 259 LLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
LL+ F N K + + ++ + N V + +
Sbjct: 304 LLNWSFQNFDTVKLYDQSQPGLDARVWEGKVENVKLGPPNPVWLAVPRGKAAEIKPVAQR 363
Query: 315 DKESHFIDFEKITLLKNK 332
+ K +
Sbjct: 364 T-DPLVAPLTKGQQVGTL 380
>gi|114319338|ref|YP_741021.1| penicillin-binding protein 6 [Alkalilimnicola ehrlichii MLHE-1]
gi|114225732|gb|ABI55531.1| penicillin-binding protein 6 [Alkalilimnicola ehrlichii MLHE-1]
Length = 381
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 9/323 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + + L+D +G V+AEN D +PASL K+MTAYVVFS L+E L
Sbjct: 27 PTPAAPSVGAAAHVLMDARSGQVLAENNADEARDPASLVKMMTAYVVFSELREGNIDLDE 86
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T+S+ A P S + G + + + ++ +I++S ND VA+AE + E+ F Q M
Sbjct: 87 LVTVSERAWRTPGSRMFIEPGDNVRVGDLIRGVIIQSGNDACVALAEHIAGDEQTFAQVM 146
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N+ ++ LG+ T+F NA G+ TTARD A+L+ I DFP+Y ++ +
Sbjct: 147 NSYAEQLGMENTYFANATGLPDEAMKTTARDTALLARAIVRDFPEYYGWYSERSFTWNDI 206
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ N N + DG+KTG T A+G+N+ ASA + LI+V+LG R + S
Sbjct: 207 RQSNRNRLLWRDSSVDGLKTGHTSAAGYNLAASAEREGTRLISVVLGTASEQARADQTQS 266
Query: 259 LLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKE 312
LL+ GF + + + ++ ++ + I++E V +++ N ++
Sbjct: 267 LLNYGFRFFETHRLYDEGEELTRTRVWKGDMEDLGVGIADELYVTIPRRQYENLEARL-- 324
Query: 313 AKDKESHFIDFEKITLLKNKITK 335
+ E E + I +
Sbjct: 325 -RLDEPLIAPIEAGQPVGRLIIR 346
>gi|330811926|ref|YP_004356388.1| cell division-related protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327380034|gb|AEA71384.1| putative cell division-related protein [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 385
Score = 226 bits (575), Expect = 4e-57, Method: Composition-based stats.
Identities = 86/327 (26%), Positives = 148/327 (45%), Gaps = 5/327 (1%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + L+D ++G V+ EN D PASLTKLMTAY+ ++
Sbjct: 21 AAFAVEMMPAPPQLAAKSFVLMDASSGEVLVENNGDQRLPPASLTKLMTAYIATLEIRRG 80
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ P+T+S+NA S K GS +T+ + L +I++S ND +VA++E + +E
Sbjct: 81 QIGENDPVTVSENAWRTGGSRMFIKVGSQVTVSDLLHGIIIQSGNDASVALSEHIAGSED 140
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F MN T +LG++ +HFMN G+ HY++A DMA+L+ I + P + + K
Sbjct: 141 AFADMMNKTVADLGMTNSHFMNPTGLPNPEHYSSAHDMALLARAIIHEDPAHYAIYSQKE 200
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
G K PN N + DG+KTG T +G+ +V+SA++ LIAV+ G R
Sbjct: 201 FFWNGIKQPNRNLLLWRDKTVDGLKTGHTDEAGYCMVSSAVRDGMRLIAVVFGTSSEVAR 260
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ LL+ GF + + ++ + +++++ T +
Sbjct: 261 AAETQKLLTYGFRFFETQTFYQKGTELAQAQVWKGTTNQVKAGLAQDLTMTLPKGQLKKL 320
Query: 309 QMKEAKDKESHFIDFEKITLLKNKITK 335
+ K ++ K
Sbjct: 321 AASMTMN-PQLTAPIAKGDVIGKVEVK 346
>gi|187476650|ref|YP_784673.1| penicillin-binding protein [Bordetella avium 197N]
gi|115421236|emb|CAJ47741.1| penicillin-binding protein [Bordetella avium 197N]
Length = 419
Score = 226 bits (574), Expect = 5e-57, Method: Composition-based stats.
Identities = 95/324 (29%), Positives = 161/324 (49%), Gaps = 6/324 (1%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A T + +D N+G V+A + PD PASLTK+MTAYVVF+ L EK+ L
Sbjct: 65 AAVPAPTIAARAWIAIDVNSGQVLAASNPDQKVEPASLTKVMTAYVVFNALDEKRLTLDQ 124
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S++A S + +T+D ++ +IV+S ND +VA+AE++ +E F M
Sbjct: 125 QVPVSQHAWRTGGSRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSETAFAALM 184
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG+ THFMNA G+ H TT RD+A L+ + +D P+Y HY++ KG
Sbjct: 185 NEQAERLGMKGTHFMNATGLPDPQHITTVRDLATLATHLVSDHPEYYHYYKQKGFTYNKI 244
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
PN N + DGMKTG T ++G+ ++++A++GD+ ++ V++GA TR + S
Sbjct: 245 TQPNRNRLLWADPSVDGMKTGHTDSAGYCLISTALRGDRRVLTVLVGADSEATRAEESLK 304
Query: 259 LLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKE 312
LL+ F N K + + + + V + + + +
Sbjct: 305 LLNWSFQNFDTVKLYDKSQPGLDARVWEGKAENVKLGPPNPVWLAVPRGKGNEIKPIAQR 364
Query: 313 AKDKESHFIDFEKITLLKNKITKK 336
+ +++ L+ + K
Sbjct: 365 TDPLVAPLAKGQQVGTLEFTLDGK 388
>gi|302390892|ref|YP_003826712.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
DSM 5501]
gi|302202969|gb|ADL11647.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
DSM 5501]
Length = 386
Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats.
Identities = 83/339 (24%), Positives = 154/339 (45%), Gaps = 6/339 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++I+ ++ L + + A + L++ TG V+ PAS+TK+MT
Sbjct: 10 IVIILVLSSLLVVASPVLAAFDIEAESAILMEAETGQVLFTKNVTEELPPASITKIMTLL 69
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + + L + S+ AS S M ++ L+ + + SAND VA+
Sbjct: 70 LAMEAIDSGQMNLDDTVIASEFASSMGGSQIYLAPKEKMKVETLLESIAIASANDACVAL 129
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKTDF 181
E + + + F++ MN + LGL T+F+N+ G+ HY++ARD+AI+S +
Sbjct: 130 GEHIAGSYQNFIKMMNERASELGLKDTNFINSTGLPTDDGAHYSSARDIAIMSRELINKH 189
Query: 182 PQYMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+ + + I +I NTN + + GADG+KTG+T +G+ + A+A + L
Sbjct: 190 PKVLDWTSIWIDKIRNGEFTLYNTNDLINYYPGADGLKTGWTDKAGYCLAATAKRDGMRL 249
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
I+V++ R + SA LL+ GF +K + + E + E
Sbjct: 250 ISVVMKTDSEEARMEESAKLLNYGFSRFDLKKVVKQGEDVGKIEVKEGEELEVKVETAED 309
Query: 300 QKEIINYNTQM--KEAKDKESHFIDFEKITLLKNKITKK 336
K ++ N + +E + ++ EK ++ I K+
Sbjct: 310 LKLVLKSNAEDLEREIELEKEVTAPIEKGEIVGKLIIKQ 348
>gi|154253549|ref|YP_001414373.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum
lavamentivorans DS-1]
gi|154157499|gb|ABS64716.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum
lavamentivorans DS-1]
Length = 384
Score = 225 bits (573), Expect = 6e-57, Method: Composition-based stats.
Identities = 91/347 (26%), Positives = 156/347 (44%), Gaps = 15/347 (4%)
Query: 1 MRQFL----VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M +F+ +++A+ + P + A Y L+D +G ++ D +PAS+
Sbjct: 1 MNRFISATAFALSLALTAVALPRGAFAFETAAEYAVLMDYESGSILWGKNADEQMHPASM 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLL 111
+KLMT ++F +++ L +S+NA S + + + L+ +
Sbjct: 61 SKLMTLDMLFGAIRDGSVSLDDEFKVSENAWRKGGAASGSSTMFADLNTVVPVHAILRGI 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
IV+S ND +A AE+L +E F + + K +GL+ ++F N+ G H TA D+A
Sbjct: 121 IVQSGNDACIATAEALSGSESAFAEALTERGKAIGLTNSNFTNSTGWPDEDHLMTAHDLA 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
+L+ I +FP++ F+ G K N N A+ DG+KTG T ASG+ +VAS
Sbjct: 181 VLARHIIMEFPEFYPIFKETDFTWNGIKQGNRNPALYLDPSVDGLKTGHTEASGYGLVAS 240
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNE 288
A +GDQ LI V+ G R S LL GF + K Q E
Sbjct: 241 AKRGDQRLILVLNGLPSERARADESVRLLDWGFRSFKHYKLFTAGTPVENAPVWQGTYGE 300
Query: 289 VPNISE---EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
VP +S+ +V + ++ N + + ++I ++ +
Sbjct: 301 VPLVSQTDIDVILSTEQRRNMKVSVLYDTPVAAPVAAGQRIGTIRIE 347
>gi|82703112|ref|YP_412678.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosospira multiformis
ATCC 25196]
gi|82411177|gb|ABB75286.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Nitrosospira multiformis ATCC 25196]
Length = 404
Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats.
Identities = 95/348 (27%), Positives = 159/348 (45%), Gaps = 12/348 (3%)
Query: 1 MRQFLVIIAMAMLSNI------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
MR+ L I + + F + Y L D +G V+ +PA
Sbjct: 26 MRRLLPISLCLLALPLAAQQPQFHAPPQTLSVAAKSYILADLQSGQVLVSKNAHERVDPA 85
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTKLMTAYVVF+ L +K+ LT + +S A S + +T+D ++ +IV+
Sbjct: 86 SLTKLMTAYVVFAALYQKRVTLTQAVPVSTRAWRAQGSRMFIEPKKPVTVDELMRGMIVQ 145
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND ++A+AE++ +E+ F Q MN + +G+ T F N+ G+ HYTTA D+A+L+
Sbjct: 146 SGNDASIALAEAVSGSEEAFAQAMNKEAARMGMKNTRFANSTGLPDPDHYTTAYDLALLA 205
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
I DFP+Y + +K N N + DGMKTG T A+G+ ++ SA +
Sbjct: 206 TAIIRDFPEYYPLYSLKEYTYNKITQANRNRLLWLDPNVDGMKTGHTDAAGYCLITSARR 265
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVP 290
G + L+AV++G + R S LL+ GF + + ++ N
Sbjct: 266 GQRRLVAVVMGTASESARAMESQRLLNYGFQFYDTVRLYPGEQEVVAIPLWKGNQDKLRT 325
Query: 291 NISEEV--CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+V + + +M+ + + +K+ +K + K
Sbjct: 326 GFGNDVYFSLPRHQTDKLKARMEYKQPLLAPVAAGQKVGTVKFMLEGK 373
>gi|78485976|ref|YP_391901.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thiomicrospira crunogena
XCL-2]
gi|78364262|gb|ABB42227.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Thiomicrospira crunogena XCL-2]
Length = 396
Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats.
Identities = 96/350 (27%), Positives = 164/350 (46%), Gaps = 21/350 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFL---------------SIAETNKLPYYTLLDTNTGHVIAEN 45
M + L + + A Y L+D N+G +IA N
Sbjct: 1 MIKILGLFFTLFAIALPSAAKTVQSQPVAPIPHVVPSAPKTAAEAYILIDFNSGKIIASN 60
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
+P+ PASLTK+MT YVV + L L +TIS A + P S + G +++
Sbjct: 61 HPEMRVEPASLTKIMTGYVVINELANGNIHLDDMVTISPKAWKMPGSKMFIEVGKKVSVK 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
N +K ++++S ND +VA+AE + +E+ F + MN + +LG+ TH+MNA G+ HYT
Sbjct: 121 NLIKGMVIQSGNDASVALAEHIAGSEEVFAELMNKYAASLGMDGTHYMNATGLPNPDHYT 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
TA+D++IL+ + T FP+ ++ K G N N + DG+KTG T ++G
Sbjct: 181 TAQDLSILARALITKFPEEYKWYAQKKFTFNGITQYNRNKLLWQDPSVDGLKTGHTESAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFY 281
+ +VASA + D LI+V+LG TR + S LL+ GF K + + +
Sbjct: 241 YCLVASAKRDDMRLISVVLGTDGAKTRIQESQKLLNYGFRFFETHKLYDNGQRLNDARIW 300
Query: 282 QQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + ++++ V + + N + + + + + + L
Sbjct: 301 EGQKDSVGLGLTDDLYVTIPRGQYKNLKIESSIQPEIIAPIAEQKPLGKL 350
>gi|89092035|ref|ZP_01164990.1| D-ala-D-ala-carboxypeptidase [Oceanospirillum sp. MED92]
gi|89083770|gb|EAR62987.1| D-ala-D-ala-carboxypeptidase [Oceanospirillum sp. MED92]
Length = 387
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 94/333 (28%), Positives = 149/333 (44%), Gaps = 9/333 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + + + + Y ++D +TG VIA D P+ PASLTK+MTAY
Sbjct: 14 LVLTLFAIQVHAVARLIPAEPQIAATAYLVMDADTGKVIASKNADKPFAPASLTKMMTAY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++ L + L + IS+ A S ++G+ + L + +K +I++S ND +VA+
Sbjct: 74 ILEYELSKGNVGLEDLVLISEKAWRTQGSRMFIREGTQVRLGDLMKGIIIQSGNDASVAV 133
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E F MN + LG+ T+F+NA G+ GH ++A D+A L+ I DFP
Sbjct: 134 AEHIAGSEPAFADLMNQHADLLGMKNTNFLNATGLPADGHESSAADLATLAKAIINDFPD 193
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ K + PN N + DGMKTG+T A+G+ +VASA + LI+V+
Sbjct: 194 LYSIYSEKYFTYNDIRQPNRNKLLWRDKTVDGMKTGYTDAAGYCLVASAKRDGMRLISVV 253
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISE--EVC 297
LG D R + S LLS F K + + I+E V
Sbjct: 254 LGTKDEEARARESQKLLSYAFRYYRTHKLYESGVMLNTTKVWSGVQDQLKIGINESLSVT 313
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + M + EK L
Sbjct: 314 IPRGQADKLQATMDVDR---VIKAPIEKGQELG 343
>gi|307823377|ref|ZP_07653606.1| Beta-lactamase [Methylobacter tundripaludum SV96]
gi|307735362|gb|EFO06210.1| Beta-lactamase [Methylobacter tundripaludum SV96]
Length = 389
Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats.
Identities = 103/343 (30%), Positives = 165/343 (48%), Gaps = 13/343 (3%)
Query: 2 RQFLVIIAMAMLSNIFPF--------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
+ V++ ++L A T Y L++ +TG V+AEN D P
Sbjct: 5 KNLPVLLFFSLLIATTAANAEDAEITTPAAPTIAASGYILMNYDTGKVLAENNADVKLAP 64
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
ASLTK+M+ YVVF + L +TIS+ A E P S + G+ + +++ LK +I+
Sbjct: 65 ASLTKIMSVYVVFREISNGHLHLNDLVTISQKAWETPGSRMFIEVGNQVKVEDLLKGVII 124
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND +VA+AE + E F MN ++ LG+ +HF +++G+ HYTTARD+AIL
Sbjct: 125 QSGNDASVALAEHIAGDETTFADMMNQHAERLGMKNSHFQDSNGLPIDNHYTTARDLAIL 184
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
S + +FP Y +F K N N + DG+KTGFT A+G+ +VASA+
Sbjct: 185 SQALIKEFPDYYRWFSQKEFTFNNIVQHNRNQLLSRDETVDGIKTGFTDAAGYCLVASAL 244
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEV 289
+ D LI+V++GA N R + +LL+ GF K ++ + N
Sbjct: 245 RNDMRLISVVMGASSPNARANENQNLLNYGFRFFEAHKLYQGKTSLAEARVWKGDTKNLQ 304
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++E++ T + + DK ++ T L
Sbjct: 305 LGLAEDLYATIPRGHYNDLKAVINIDK-KITAPVKEGTKLGTV 346
>gi|317401414|gb|EFV82047.1| penicillin-binding protein [Achromobacter xylosoxidans C54]
Length = 356
Score = 224 bits (569), Expect = 2e-56, Method: Composition-based stats.
Identities = 94/324 (29%), Positives = 159/324 (49%), Gaps = 6/324 (1%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A T + ++D N+G +A + PD PASLTK+MTAYVVF+ L+EK+ L
Sbjct: 2 SAVPAPTIAAKAWIVIDVNSGQTLAASNPDMKVEPASLTKIMTAYVVFNALEEKRLTLEQ 61
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S++A S + +T+D + +IV+S ND +VA+AE++ +E F M
Sbjct: 62 TVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQSGNDASVALAEAVGGSEAAFATLM 121
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG+ THFMNA G+ H T+ RD+A LS + TD PQ+ HY++ K
Sbjct: 122 NQEAERLGMRNTHFMNATGLPDPQHMTSTRDLATLSAHLITDHPQFFHYYKQKSFTYNKI 181
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
PN N + DGMKTG T ++G+ +V++A++GD+ ++ V++G TR + S
Sbjct: 182 TQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAVRGDRRILVVVVGTDSEATRAEESLK 241
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEIINYNTQMKE 312
LL+ F N K + + N+ + + + + +
Sbjct: 242 LLNWSFQNFDTVKLFDKSQPGIDARVWEGTAENVKLGPPNPVSIAVPRGKAGDLKPVAQR 301
Query: 313 AKDKESHFIDFEKITLLKNKITKK 336
+ +++ L+ + K
Sbjct: 302 TDPLIAPLTKSQQVGTLQFTLDGK 325
>gi|158320620|ref|YP_001513127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
OhILAs]
gi|158140819|gb|ABW19131.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
OhILAs]
Length = 386
Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 91/343 (26%), Positives = 156/343 (45%), Gaps = 8/343 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M +II++A+ + I + L+D NTG V+ E PAS+TK+M
Sbjct: 8 MICLSLIISLALSTAIVNGDTAPFDINAKSAILIDANTGTVLYEKNIHEKLPPASVTKIM 67
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T +V + K L +T+S+ AS+ + + G T++ +K + ++SAND +
Sbjct: 68 TMLLVMEAIDSNKITLNDKVTVSERASKMGGTQLYLEPGEVKTVEELMKGVAIRSANDAS 127
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SW 175
+A+ E + TE+ FVQ MN +K LG++ T F+N +G+ GH TTA D+AI+
Sbjct: 128 LALGEHIAGTEELFVQEMNRRAKELGMNNTTFVNTNGLPAEGHVTTAYDIAIMSRELLKH 187
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ + + G + NTN + ++ GA+G+KTG+T + + ASA +G
Sbjct: 188 KSIHKWLTTWMDTVVVGKRQSEQSLVNTNRLINSYQGANGIKTGYTTEALHCLSASATRG 247
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNI 292
+ I+VIL A R +A LL GF N + + + + E+ +
Sbjct: 248 GTTFISVILAAPSSQVRFNEAAKLLDYGFANYNTVEVVKKDGFVGNISLNKGKKAEIELV 307
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ + KE E +K + I K
Sbjct: 308 AKDNLNVLVKKGEEAKVHKEIVLPEFINAPIKKGDTVGEIIVK 350
>gi|311693499|gb|ADP96372.1| serine-type D-Ala-D-Ala carboxypeptidase [marine bacterium HP15]
Length = 374
Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 85/330 (25%), Positives = 151/330 (45%), Gaps = 5/330 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L++ + + Y L+D +G +I E PASLTK+MTAY+
Sbjct: 2 LMLALTGKAMSQSVLIPSPPQIAGSSYVLMDPKSGRIIMEENSHERLPPASLTKMMTAYI 61
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
V L E + ++ + IS NA + S + ++G+ +++++ L+ +I++S ND +VA+A
Sbjct: 62 VERELDEGRIAMSDMVPISVNAWKTEGSRTFVREGTQVSVEDLLRGVIIQSGNDASVALA 121
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + +E FV MN ++ LG+ T+F+NA G+ H++TA D+A+L+ I D+P+
Sbjct: 122 EFVAGSEGAFVDIMNQQAQLLGMKDTNFVNATGLPSPEHFSTAYDLAMLARAIINDYPEN 181
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ K + PN N + DG+KTG T +G+ +VASA + D IAV++
Sbjct: 182 YPLYAEKHFTYNNIRQPNRNSLLWRDDSVDGLKTGHTEEAGYCLVASAKRNDTRFIAVVM 241
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQ 300
G R + +L+ GF + + + ++E+V T
Sbjct: 242 GTNSSEARAQEIQKMLNYGFRYYESERLFRSGQELIEARVWGGQADQLSVGMTEDVYVTI 301
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + D + L
Sbjct: 302 PRGSRNDLESTVDLDSV-IKAPIKVGDELG 330
>gi|319944900|ref|ZP_08019162.1| D-alanyl-D-alanine carboxypeptidase DacA [Lautropia mirabilis ATCC
51599]
gi|319741470|gb|EFV93895.1| D-alanyl-D-alanine carboxypeptidase DacA [Lautropia mirabilis ATCC
51599]
Length = 411
Score = 223 bits (568), Expect = 2e-56, Method: Composition-based stats.
Identities = 98/358 (27%), Positives = 167/358 (46%), Gaps = 24/358 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+RQ L + +A + ++ + L D +T V+ PD PAS
Sbjct: 21 LRQRLSALMLATSLGLAAPVAMAQSLPPPDIGGRSWFLFDVSTNTVLYSQAPDERVEPAS 80
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
LTKLMTAYVVF L++ + T +S+ A + S T++ L LI++S
Sbjct: 81 LTKLMTAYVVFEALRDGTLNMDTRPPVSQAAYKAIGSRMFVDPRKPATVEELLHGLIIQS 140
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND A+ +AE++ +E+ F Q MN ++ +G+ +HF+NA G+ HY+TARDMA+L+
Sbjct: 141 GNDAAIILAEAVSGSEEAFAQQMNAEARRIGMKNSHFVNASGLPAPEHYSTARDMALLAT 200
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
RI +FP Y + K G + PN N + DGMKTG T A+G+ +VASA +
Sbjct: 201 RIIKEFPDYYRMYSEKEYTFNGVRQPNRNRLLYIDPSVDGMKTGHTDAAGYCLVASAHRE 260
Query: 236 D------------QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII-----K 278
+ +++V++GA TR S LL+ GF N +
Sbjct: 261 QRNAADPNGSPFSRRILSVLMGATTDATRATESQKLLNYGFQNFEALQLYRKNQPVGQHP 320
Query: 279 DFYQQNLSNEVPNISEEVCT--TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
++ + +++V + +I N +++ + + ++I L+ ++
Sbjct: 321 PVWKGQQATVAAGFADDVLITAPRSQIANIKGEIERTEPLVAPIHAGQRIGTLRIRLG 378
>gi|330505013|ref|YP_004381882.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina
NK-01]
gi|328919299|gb|AEB60130.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudomonas mendocina
NK-01]
Length = 391
Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 90/340 (26%), Positives = 150/340 (44%), Gaps = 10/340 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L ++A + + A Y L+D +G+V+ EN D PASLTKLMTAY+
Sbjct: 14 LTLLAAPLAMANQQVVPAAPQLAAKSYVLMDAASGNVLVENNADQRLPPASLTKLMTAYI 73
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDI 119
++ K +TIS++A S S T+D+ L +I++S ND
Sbjct: 74 ATLEIRNGKIGEQDLVTISEHAWRTGGAASGGSTMFLPLNSQATVDDLLHGIIIQSGNDA 133
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
++AIAE + +E F MN T++ LG+ +HFMNA G+ HY++A DMAIL+ I
Sbjct: 134 SIAIAEYIAGSEDAFADMMNATAERLGMKNSHFMNATGLPHPEHYSSAHDMAILARAIIN 193
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ ++ + K K PN N + DG+KTG T +G+ +VASA++ +
Sbjct: 194 EDAEHYAIYSQKEFLWNNIKQPNRNLLLWRDRTVDGLKTGHTSEAGYCLVASAVRDGARM 253
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE 295
I + G R + LL+ GF R + ++ + ++E+
Sbjct: 254 ITSVFGTDSEQARAAETQKLLTYGFRFFESRTFYQKGTELAQATVWKGATNQVKAGLAED 313
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + Q + ++ ++ K
Sbjct: 314 LTMTMPKGQLEKLQASMTLN-PQLIAPIQQGDVIGKVEVK 352
>gi|291541617|emb|CBL14727.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63]
Length = 382
Score = 223 bits (567), Expect = 3e-56, Method: Composition-based stats.
Identities = 100/349 (28%), Positives = 169/349 (48%), Gaps = 13/349 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS------IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
+R+ V I + + + PF+ A++ P L++++TG V+ E P A
Sbjct: 2 LRKAFVSITLCAVFLLLPFVGLKVNALSADSISAPSAVLMESSTGKVLFEKNPHEQRPCA 61
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK+MT +VF + K L IT S++A+ S+ +KG TM+ D+ +K +V
Sbjct: 62 SVTKIMTLLLVFEAVDSGKLSLDDEITASEHAAGMGGSDIWLEKGETMSADDMIKATVVV 121
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND AVA+AE + E FV+ MN+ +K LG++ T F N +G+ + GH T+A D+A++S
Sbjct: 122 SANDAAVALAEHISGGEDAFVEKMNSRAKELGMNDTVFKNCNGLDEEGHITSAYDVALMS 181
Query: 175 WR-IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
K + + L + NTN + T+ G G+KTG T +G + A+A
Sbjct: 182 RELTKHEKIFDYTSIWLDNLRGGKTQIVNTNKLLKTYNGITGLKTGTTNDAGCCMSATAT 241
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVP 290
+GD SLI+V+LG R +A+LL GF N + ++ +++ V
Sbjct: 242 RGDVSLISVVLGCKTGKERFADAAALLDYGFANVSVKELTLPEDMPKSIEVNGGMTDSVK 301
Query: 291 ---NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+S ++ + T++ ++ KI L + K
Sbjct: 302 LECKVSSKIVVDKGSGAKITTEIDLPDKIDAPVEKNRKIGTLTYLVNSK 350
>gi|209964479|ref|YP_002297394.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW]
gi|209957945|gb|ACI98581.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW]
Length = 403
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 86/335 (25%), Positives = 156/335 (46%), Gaps = 5/335 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R+ I + ++ I P + L+DT+TG V+ E D +S++K+MT
Sbjct: 29 RRLAAIAVLTLVGTILPAQAATIDTIAREAILIDTSTGTVLFEKNADERTPTSSMSKVMT 88
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
Y+VF ++ + L + +S+NA S + G+++ +++ ++ +I++S ND +
Sbjct: 89 MYMVFDRIRSGRLSLDDTLPVSENAWRMQGSKMWVELGNSIRVEDLIRGVIIQSGNDACI 148
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+AE L +E F M + +G++A++FMNA G HY+TARD+A L+ R+ DF
Sbjct: 149 VLAEGLSGSEPAFAADMTRKAHEMGMTASNFMNASGWPDPDHYSTARDLATLAQRLIKDF 208
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P+++HY+ K G K N N + +G DG+KTG T ++G+ ++A+ + + L+
Sbjct: 209 PEFLHYYSEKEFTYHGIKQGNRNPLLYRNMGVDGLKTGHTESAGYGLIATGERDGRRLVL 268
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVC 297
V+ G + R SA LL G+ T + + +E+
Sbjct: 269 VVNGLPNMQARADESARLLEWGWREFTSVALFKAGEMIDTLPVWLGAAETVPAVLDQELK 328
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N ++ D K T +
Sbjct: 329 ITLTRAQQRNLKVTLLSD-GPVAAPVPKGTRIGTL 362
>gi|30249456|ref|NP_841526.1| D-alanyl-D-alanine carboxypeptidase [Nitrosomonas europaea ATCC
19718]
gi|30138819|emb|CAD85396.1| D-alanyl-D-alanine carboxypeptidase 1 (S11) family [Nitrosomonas
europaea ATCC 19718]
Length = 385
Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats.
Identities = 90/342 (26%), Positives = 157/342 (45%), Gaps = 6/342 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M+QF+ + + + + L+D ++ +A + P +PASLTKLM
Sbjct: 13 MKQFIFSLFLLATISPAWSQQPELAVAAKSFILIDFHSSQTLASSNPHERLDPASLTKLM 72
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYVVFS L++++ + + +S + S + +T+D + +IV+S ND
Sbjct: 73 TAYVVFSALQQERIKIDQVVPVSNRSWRMVGSRMFIEPNKQVTVDELIHGVIVQSGNDAC 132
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + +E FV MN +K LG+ THF N+ G+ HY+TA D+A+L+ I D
Sbjct: 133 VALAELIAGSEDLFVHMMNEEAKRLGMHNTHFTNSTGLTHSDHYSTAHDLALLAAAIIRD 192
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ + ++ G N N + T DGMKTG+T A+G+ +V SA + + LI
Sbjct: 193 FPERYPLYSLREYTYNGITQQNRNRLLWTDPNVDGMKTGWTEAAGYCLVTSAKRDQRRLI 252
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE------ 294
+V++G N R+ S LL+ GF Q +
Sbjct: 253 SVVMGTASPNARSIESQRLLNYGFQFFDTAHPYKKDQPVANVQIWKGAQNKLKVGFDRDI 312
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ +M+ + + ++ ++K + +
Sbjct: 313 YFSLPKGKVEGLKARMEYRQPLIAPIDRGREVGMVKFILDGQ 354
>gi|311030730|ref|ZP_07708820.1| D-alanyl-D-alanine carboxypeptidase [Bacillus sp. m3-13]
Length = 387
Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 149/351 (42%), Gaps = 15/351 (4%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M++F+ IIA+A + F + AE L++ +TG V+ E P
Sbjct: 1 MKKFITAIIAIAFTFSAFSPVVGAEEKSVQLTENARSAILIERDTGQVLYEKNGHEKLPP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS+TK+MT ++ + + + I S+ A+ S + G MT D L+ + +
Sbjct: 61 ASMTKIMTMLLIMEAIDKGELTWDEKIRTSEYAASMGGSQIFLEPGEEMTTDEMLRGIAI 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND +VA+AE + +E FV MN +K LGL T F N G+ HY+TA DMA++
Sbjct: 121 ASGNDASVAMAERIAGSEAAFVDRMNAKAKELGLENTLFQNPTGLPAKNHYSTANDMAVM 180
Query: 174 SWRIKTDFPQYMHYFQI----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ + + Q + K NTN V + G DG+KTGFT + + +
Sbjct: 181 AKELLKFEGITKYTGQYEDYLRQDSEKKFWLVNTNKLVRFYPGVDGVKTGFTQEAKYCLT 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNL 285
A+A + + +IAV+ GA RN ++L F + + +
Sbjct: 241 ATAKKDNMRVIAVVFGAPTPKDRNAQITNMLDFAFSQYKTHPMYERNVAVGRVEISKGSQ 300
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
SE + K+ N + K E+ +K + + KK
Sbjct: 301 KEVDAVTSEPISVLTKKGENTDDVEKIITVDENVKAPVKKGDKVGKIVLKK 351
>gi|9971925|gb|AAG10487.1|AF279106_49 predicted penicillin-binding protein 6 precursor [uncultured marine
gamma proteobacterium EBAC31A08]
Length = 385
Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 95/336 (28%), Positives = 160/336 (47%), Gaps = 7/336 (2%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ L +++ ++ F+ + L Y L++ NT VIAE D PAS+TK+
Sbjct: 1 MKKLLFTLLSTSIFIQAQSFVPDSPELDLKSYILIEPNTNTVIAEFNSDLEIEPASMTKI 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT+YVV + L + IS+ A S + + G +T+ + LK ++++S ND
Sbjct: 61 MTSYVVADQIANGLISLDDEVLISEKAWRMQGSKTFIEAGKKVTVSDLLKGIMIQSGNDA 120
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+VAIAE TE+ FV MN+ + +L ++ T F N+ G+ H+++A+D+A L+
Sbjct: 121 SVAIAEYAGGTERGFVDLMNSYAASLEMNNTIFQNSTGLPDENHFSSAKDLANLTANYIN 180
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
FP+ ++ K K N N + ADG+KTG T A+G+ +V SA +G L
Sbjct: 181 KFPEEYALYKQKQFTFNNIKQLNRNKLLWRDDSADGVKTGHTEAAGYCLVGSAKRGGMRL 240
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY------IIKDFYQQNLSNEVPNIS 293
I V+ G+ N R S LL GF T +K ++ I Q+ +
Sbjct: 241 ITVVAGSKSDNDRFLSSQRLLEYGFRFFTTQKMLSAEKEYQNITVWGGQEKILGVGVLED 300
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + N T K + ++ + +K+ L
Sbjct: 301 ISITLPRTSFKNVETVYKVNNNIQAPIVVGQKVGTL 336
>gi|288942562|ref|YP_003444802.1| beta-lactamase [Allochromatium vinosum DSM 180]
gi|288897934|gb|ADC63770.1| Beta-lactamase [Allochromatium vinosum DSM 180]
Length = 380
Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 90/324 (27%), Positives = 146/324 (45%), Gaps = 3/324 (0%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ Y L+D +TG +AE D PASLTK+MTAY VF L ++
Sbjct: 22 VGAQTTTPAPPELEAKGYLLVDFHTGKTLAELNADERLEPASLTKIMTAYTVFRELASER 81
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
LT + +S+ A S + G ++L++ LK +I++S ND +VA+AE + +
Sbjct: 82 IKLTDQVLVSEKAWRTGGSKMFIEVGKHVSLEDLLKGMIIQSGNDASVALAEYVSGNVES 141
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG++ +HF N +G+ YTTARDMA ++ + +FP+Y ++ +
Sbjct: 142 FANLMNAHAKRLGMTNSHFTNPNGLPDPELYTTARDMARVAVALIREFPEYYAWYSNQEF 201
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
G N N + ADG+KTG+T A+G+ +V SA + D LI+V++G R
Sbjct: 202 TYNGITQANRNPLLKRDPTADGIKTGYTKAAGYCLVGSAKRDDMRLISVVMGTPSPRARA 261
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+ S +LL+ GF K + +P E Y+
Sbjct: 262 EASLALLNYGFRTYESHKLYPVGQPIENLRVWYGEQDTLPVGPERDVVATIPRGQYDKLS 321
Query: 311 KEAKDKESHFIDFEKITLLKNKIT 334
+ + L + +
Sbjct: 322 ARIEKTSDMNAPIAQGDQLGDVVV 345
>gi|226942990|ref|YP_002798063.1| D-Alanyl-D-Alanine carboxypeptidase [Azotobacter vinelandii DJ]
gi|226717917|gb|ACO77088.1| D-Alanyl-D-Alanine carboxypeptidase [Azotobacter vinelandii DJ]
Length = 404
Score = 222 bits (564), Expect = 8e-56, Method: Composition-based stats.
Identities = 87/318 (27%), Positives = 147/318 (46%), Gaps = 5/318 (1%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ Y L+D +G V+ E+ + PASLTKLMTAY+ +K + +
Sbjct: 46 AIPAPPQLASTAYLLMDAASGQVLIESNGEQRLPPASLTKLMTAYIATLEIKRGQIKESD 105
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T+S+ A S + G+ +++ + L +I++S ND +VA+AE + +E F M
Sbjct: 106 LVTVSERAWRTGGSRMFIQVGTQVSVSDLLHGIIIQSGNDSSVALAEHIAGSEDAFADMM 165
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N T++ LGLS THFMNA G+ HY++A DMA L+ I D P + + K
Sbjct: 166 NATAQRLGLSNTHFMNATGLPHAEHYSSAHDMARLARAIIYDDPAHYAIYAQKEFFWNNI 225
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
K PN N + DG+KTG T +G+ +VASA++ Q LIAV+ G R +
Sbjct: 226 KQPNRNLLLWRDKTVDGLKTGHTEEAGYCLVASAVRDGQRLIAVVFGTKSEQARAAETQK 285
Query: 259 LLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
LL+ GF + ++ ++ + ++E++ T +
Sbjct: 286 LLTYGFRFFETQTFFQKNVELARSPVWKGASNEVRIGLAEDLTLTMPRG-QLKQLTTTSA 344
Query: 315 DKESHFIDFEKITLLKNK 332
+ ++ ++
Sbjct: 345 FEPQLIAPIQQGAVVGKV 362
>gi|160872568|ref|ZP_02062700.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
[Rickettsiella grylli]
gi|159121367|gb|EDP46705.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
[Rickettsiella grylli]
Length = 397
Score = 221 bits (563), Expect = 9e-56, Method: Composition-based stats.
Identities = 94/317 (29%), Positives = 147/317 (46%), Gaps = 5/317 (1%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
F IA Y L+D +G ++A D PASLTK+MT+YVV L++ + LT
Sbjct: 40 TFTPIAPNVNAKAYLLMDAYSGKILASKNIDEHLAPASLTKMMTSYVVSMALQQGRIHLT 99
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ IS+ A + S K G +++ + ++ +IV S ND VA+AE + +++ FV
Sbjct: 100 DLVPISEAAWKTGGSKMFVKVGDKVSVQDLMQGMIVDSGNDACVAMAEYIAGSQESFVNL 159
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN + LG+ THF++ G+ HYTTARDM+IL+ + DFP+ ++ K G
Sbjct: 160 MNQQAARLGMKNTHFVDVDGLPDPNHYTTARDMSILARALILDFPEDYKWYSQKWFSYNG 219
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
K PN N + DG+KTG T +GF + AS + LI +++GA R + S
Sbjct: 220 IKQPNRNRLLWRNPDVDGIKTGHTNEAGFCLAASGQKNGLRLITIVMGAPSDEVRAQDSQ 279
Query: 258 SLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
LL+ GF RK N + S + ++ T M
Sbjct: 280 KLLTYGFRFFESRKLYNAGENLATTKVWFGERSKIEAGFATDLYVTLPLGFT-KKPMMTM 338
Query: 314 KDKESHFIDFEKITLLK 330
+ +K ++
Sbjct: 339 VFRPHLKAPLKKGEIIG 355
>gi|149181665|ref|ZP_01860158.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Bacillus sp. SG-1]
gi|148850643|gb|EDL64800.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Bacillus sp. SG-1]
Length = 387
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 82/351 (23%), Positives = 151/351 (43%), Gaps = 16/351 (4%)
Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWNP 53
MR+ + I+ + ++++ F + AE K L++ +TG V+ + P
Sbjct: 1 MRRIISAILMLVLITSAFAPFASAEEKKTELAAGAKSAILIERDTGTVLYDKNSHEKLPP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS+TK+MT ++ L + + + S+ A+ S + G MT+ L + +
Sbjct: 61 ASMTKIMTMILIMEALDKGQIKWEDEVRTSEYAASMGGSQIFLEPGEVMTVKEMLLGISI 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND +VA+AE + +E+ FV+ MNN K+LGL T+F N G+ HY++A DMA++
Sbjct: 121 GSANDASVAMAEHIAGSEEGFVEKMNNKVKDLGLKDTNFKNPTGLPASEHYSSAHDMAMM 180
Query: 174 SWRIKTDFPQYMHYFQI----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ + + + K NTN V + G DG+KTGFT + + +
Sbjct: 181 AKELLKYQEITKYTGTYESYLREDTDKKFWLVNTNKLVRFYPGVDGLKTGFTNEAKYCLT 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNL 285
A+A + + +IAV+ G RN + + F + + +
Sbjct: 241 ATAKKDNMRVIAVVFGEPTPKDRNAEISKMFDYAFSQYQTQPLFEKGASVGKAEISKGKA 300
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+E + K+ + K+ K + +K + + +K
Sbjct: 301 KEVEAMTNEPISLLAKKGEKLDGIEKKVKLQ-KLKAPVKKGDTIGKLVVEK 350
>gi|256004001|ref|ZP_05428987.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
DSM 2360]
gi|255992129|gb|EEU02225.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
DSM 2360]
gi|316940572|gb|ADU74606.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
DSM 1313]
Length = 404
Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats.
Identities = 88/317 (27%), Positives = 149/317 (47%), Gaps = 5/317 (1%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ Y L+D TG ++ EN AS+TK+M+ +V + K + +T S
Sbjct: 49 FELQAKSYVLMDAETGQILLENRSHERLPIASITKIMSMLLVMEAIDSGKINMDDIVTAS 108
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ A+ S + + G T+ +ALK + S+ND+ V++AE + +E+ FV MN +K
Sbjct: 109 EYAASMGGSQAYIEPGEQYTVRDALKAVATHSSNDVTVSLAELVAGSEQVFVVLMNEKAK 168
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYP 201
LG++ T+F++ G+ GHY+TA D+A++S + P+ + + I +
Sbjct: 169 ELGMNNTNFLDCTGLTDEGHYSTAYDVALMSRELIVKHPKILEFTSIWMDTFRNGEFQLV 228
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
NTN V + G DG+KTGFT A+G + A+A + D LI+V+LG D NTR + LL
Sbjct: 229 NTNKLVHFYEGCDGLKTGFTRAAGHCLSATAKRNDMRLISVVLGEPDSNTRFAETRKLLD 288
Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE---EVCTTQKEIINYNTQMKEAKDKES 318
GF N ++ + +P I + + ++E + K S
Sbjct: 289 YGFANYESKQVNKKGEVVNEIEVKRALIPKIKALYGDDVKLLFARSDKGKVVREVRLKSS 348
Query: 319 HFIDFEKITLLKNKITK 335
K + + K
Sbjct: 349 LTAPVAKGEKVGEVVYK 365
>gi|317128503|ref|YP_004094785.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cellulosilyticus
DSM 2522]
gi|315473451|gb|ADU30054.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cellulosilyticus
DSM 2522]
Length = 387
Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats.
Identities = 82/351 (23%), Positives = 156/351 (44%), Gaps = 17/351 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ +++ + + ++AE + L++ +TG V+ E PA
Sbjct: 1 MKKSFIVLLLGLYMFSSAGSALAEESTVDLADDATSAILIERDTGQVLYEKNSGEKLPPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK+MT ++ + K + S+ A+ S + G MT++ +K + +
Sbjct: 61 SMTKVMTMLLIMEAIDSGKITWDEKVRTSERAASMGGSQIFLEPGEEMTVEEMMKGIAIA 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL- 173
S ND +VA+AE L +E++FVQ MN+ +K LGL THF+N++G+ HY++A D+A++
Sbjct: 121 SGNDASVAMAEHLAGSEEQFVQMMNDKAKKLGLKNTHFVNSNGLPAENHYSSAEDLALMA 180
Query: 174 ----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ T + + ++ NTN V + G DG+KTGFT + + +
Sbjct: 181 KALLKYEEITKYTSLYEDY-LRQDTDDEFWLVNTNKLVKFYPGVDGLKTGFTNEAKYCLT 239
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNL 285
ASA + +IAV++GA RN+ +L + +++ + + + +
Sbjct: 240 ASANKNGMRIIAVVMGAPTPKDRNRQVTEMLDYAYSQYELQRRYDRGQVLGEAEVSKGST 299
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
E V K+ N + + E +K + +K
Sbjct: 300 KTVPALAKENVSLLMKKGENVEGITERLEINE-IPAPVKKGDTIGTLYVEK 349
>gi|329893664|ref|ZP_08269798.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
IMCC3088]
gi|328923591|gb|EGG30903.1| D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
IMCC3088]
Length = 389
Score = 221 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 91/341 (26%), Positives = 152/341 (44%), Gaps = 12/341 (3%)
Query: 1 MRQFLVIIAM--AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ L A +S + + L+D TG+VIAE+ + PASLTK
Sbjct: 1 MQKLLATAAALGFSVSVSAAIIPAPPEVAARAHYLIDATTGYVIAESNANEQLPPASLTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN-----STFKKGSTMTLDNALKLLIV 113
LMT+YV+ ++ + + IS+NA P + G +++ + K +++
Sbjct: 61 LMTSYVLSYEIERGRVAFDDKVLISENAWAQNPIFKGSSLMWLEPGMEVSISDLEKGIVI 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND VAIAE L E F MN ++ LG++ ++F N+HG+ H TTA D+A+L
Sbjct: 121 SSGNDATVAIAEHLAGNETAFADMMNTHAQRLGMNDSYFENSHGLPSPNHLTTAHDLALL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ I DFP + + + K N N +G DG+KTG+T +G+ +V+SA
Sbjct: 181 AKAIIQDFPTHYQIYAERDYTFNNIKQYNRNTLLGEDPSVDGLKTGYTSEAGYGLVSSAK 240
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEV 289
+GD LI+V+LG TR + SLL+ GF + + + +
Sbjct: 241 RGDMRLISVVLGTSSAKTRASETRSLLNYGFRYFETAELLPAEREMEKPEVWMGLADYLS 300
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + T N + E ++ +
Sbjct: 301 VGVVDAITLTLPRGERRNVAQVVTLN-EPLSAPIKRGDEVG 340
>gi|152976485|ref|YP_001376002.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152025237|gb|ABS23007.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
391-98]
Length = 392
Score = 221 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 92/356 (25%), Positives = 152/356 (42%), Gaps = 20/356 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL------------PYYTLLDTNTGHVIAENYPD 48
M++ I+ ML +S A++ K +++ +TG V+ E P+
Sbjct: 1 MKRVFGILVCCMLLLSHTSVSFAKSEKAIEETKPKLAEQASSAIVIEQDTGKVLFEKNPN 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
PAS+TK+MT ++ +++ K L + S++A+ S + G MT++ L
Sbjct: 61 EKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRTSEHAASMGGSQIFLEPGEEMTVNEML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
K + + S ND +VA+AE + +E+ FV MN +K LGL THF N G+ HY+TA
Sbjct: 121 KGIAIASGNDASVAVAEHIAGSEEGFVNMMNKRAKELGLKNTHFQNPTGLPAKNHYSTAI 180
Query: 169 DM----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
DM L + ++ K NTN V + G DG+KTGFT +
Sbjct: 181 DMAIIAKELMKYPLIRKYTGKYEDYLRENTDKKFWLVNTNKLVRFYPGVDGVKTGFTTEA 240
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DF 280
+ + ASA + +I+V++GA RN LL F T +K K
Sbjct: 241 KYCLTASAEKNGMRVISVVMGAPTSKERNSQVTKLLDYAFGQYTTKKLYKRGEKIQTVQV 300
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ V K+ + + KE ++ +K L + K
Sbjct: 301 GKGKKEKVDLVAADNVSLLMKKGEDMDKIKKEIIAEKKVKAPIKKGDALGTLVITK 356
>gi|125973197|ref|YP_001037107.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
ATCC 27405]
gi|281417396|ref|ZP_06248416.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
JW20]
gi|125713422|gb|ABN51914.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
ATCC 27405]
gi|281408798|gb|EFB39056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
JW20]
Length = 404
Score = 221 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 87/317 (27%), Positives = 148/317 (46%), Gaps = 5/317 (1%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ Y L+D TG ++ EN AS+TK+M+ +V + K + +T S
Sbjct: 49 FELQAKSYVLMDAETGQILLENRSHERLPIASITKIMSMLLVMEAIDSGKINMDDIVTAS 108
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ A+ S + + G T+ +ALK + S+ND+ V++AE + +E+ FV MN +K
Sbjct: 109 EYAASMGGSQAYIEPGEQYTVRDALKAVATHSSNDVTVSLAELVAGSEQVFVVLMNEKAK 168
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYP 201
LG++ T+F++ G+ GHY+TA D+A++S + P+ + + I +
Sbjct: 169 ELGMNNTNFLDCTGLTDEGHYSTAYDVALMSRELIVKHPKILEFTSIWMDTFRNGEFQLV 228
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
NTN V + G DG+KTGFT A+G + A+A + D LI+V+LG D NTR + LL
Sbjct: 229 NTNKLVHFYEGCDGLKTGFTRAAGHCLSATAKRNDMRLISVVLGEPDSNTRFAETRKLLD 288
Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE---EVCTTQKEIINYNTQMKEAKDKES 318
GF N ++ + +P I + + ++E + K
Sbjct: 289 YGFANYESKQVNKKGEVVNEIEVKRALIPKIKALYGDDVKLLFARSDKGKVVREVRLKSF 348
Query: 319 HFIDFEKITLLKNKITK 335
K + + K
Sbjct: 349 LTAPVAKGEKVGEVVYK 365
>gi|226939903|ref|YP_002794976.1| DacC [Laribacter hongkongensis HLHK9]
gi|226714829|gb|ACO73967.1| DacC [Laribacter hongkongensis HLHK9]
Length = 382
Score = 221 bits (561), Expect = 2e-55, Method: Composition-based stats.
Identities = 84/347 (24%), Positives = 158/347 (45%), Gaps = 14/347 (4%)
Query: 1 MRQFLVI-IAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + ++ A+L F+ A Y + D +G +A P+
Sbjct: 1 MKKLIAASLSTALLFTSSWALAEGTAGFVPPAPDIAGKAYIVNDFYSGQTLASRDPNTRI 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PASLTKLMTAY+ F +KE + + S+ A S + +++++ ++ +
Sbjct: 61 EPASLTKLMTAYLTFKAIKEGRLKGEQMLQPSEKAWRTEGSRMFLDLRTPVSVNDLMRGM 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
IV+S ND V +AE++ +E+ F Q MN +K LG++ ++F N+ G+ Y T RD+
Sbjct: 121 IVQSGNDACVTLAEAIGGSEEVFAQMMNREAKRLGMTGSNFTNSTGLPDPNLYMTVRDLG 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
ILS + D+P++ + +K K PN N + DG+KTG T ++GFN+V+S
Sbjct: 181 ILSGALIHDYPEFYPIYSMKEFTYNKIKQPNRNLLLYRDPSVDGLKTGHTASAGFNLVSS 240
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSN 287
A + D+ +I+V++G R S+ LL+ G + Y+ + ++
Sbjct: 241 AKRDDRRVISVVVGTTSPEARAVESSKLLNYGLQFFDTPRLYQANQSVSTLRVYKGDAND 300
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+++V T + ++ + ++ +
Sbjct: 301 VNVGFADDVYVTVPKGAASRIKVSMTSTQP-LIAPVKQGQAVGKLTL 346
>gi|239827603|ref|YP_002950227.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
gi|239807896|gb|ACS24961.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
Length = 393
Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 85/357 (23%), Positives = 148/357 (41%), Gaps = 21/357 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI-------------AETNKLPYYTLLDTNTGHVIAENYP 47
M++ + + + I P + N L++ +TG V+ E
Sbjct: 1 MKKLFIRLFLFASIFILPISANIHAEENKTNTRGIQLANDAKSAILIERDTGTVLYEKNA 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
PAS+TK+MT ++ + + + + S+ A+ S + G MT+D
Sbjct: 61 HKKLPPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGSQIFLEPGEEMTVDEL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
L+ + + S ND +VA+AE + +E+ FV+ MN +K LGL T F N+ G+ GHY++A
Sbjct: 121 LRGIAIGSGNDASVAMAERIAGSEEAFVEMMNKKAKELGLKNTSFQNSTGLPAEGHYSSA 180
Query: 168 RDMAILSWRIKTDFPQYMHY----FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
DMA+++ + + ++ K NTN V + G DG+KTGFT
Sbjct: 181 YDMAMMARELLKYEDITKYTGIYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTNE 240
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KD 279
+ + + A+A + +IAV+ GA RN +L F +
Sbjct: 241 AKYCLTATAKKNGMRVIAVVFGASTPKDRNAQITKMLDYAFSQYKTHPVYKRNEIIAHVN 300
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ SE + K+ + + K + KE+ +K L I K+
Sbjct: 301 VSKGKKKAIALVTSEPISVLTKKGQSIDQIEKVIQTKENVKAPIKKGDELGVLILKQ 357
>gi|163859128|ref|YP_001633426.1| secreted serine-type D-Ala-D-Ala carboxypeptidase [Bordetella
petrii DSM 12804]
gi|163262856|emb|CAP45159.1| secreted serine-type D-Ala-D-Ala carboxypeptidase [Bordetella
petrii]
Length = 414
Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats.
Identities = 96/317 (30%), Positives = 149/317 (47%), Gaps = 3/317 (0%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A T + +D ++G V+A PD PASLTK+MTAYVVF+ LKEK+ L
Sbjct: 60 SSVPAPTIAARAWITIDASSGQVLAAANPDMQIEPASLTKIMTAYVVFNALKEKRITLEQ 119
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S++A S + +T+D ++ +IV+S ND +VA+AE++ +E F M
Sbjct: 120 QVPVSEHAWRTGGSRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSESAFAALM 179
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LGL THFMNA G+ H TT D+A+LS + D P Y HY++ K
Sbjct: 180 NQEAERLGLKRTHFMNATGLPDPQHVTTVADLAVLSAALINDHPDYYHYYKQKEFTYNKI 239
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
PN N + DGMKTG T A+G+ +V++A++GD+ ++ V+ GA TR + S
Sbjct: 240 TQPNRNRLLWADPSVDGMKTGHTDAAGYCLVSTALRGDRRVLTVLAGADSEATRAEESLK 299
Query: 259 LLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
LL+ F N + + + V + A+
Sbjct: 300 LLNWSFQNFDTVQLYGKSQPGLDVRVWEGTVETVKLGPPHPVSLTVPRGKAGDIKPVAQH 359
Query: 316 KESHFIDFEKITLLKNK 332
+ K +
Sbjct: 360 TDPLVAPLSKGQQVGTL 376
>gi|53802656|ref|YP_112644.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str.
Bath]
gi|53756417|gb|AAU90708.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str.
Bath]
Length = 392
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 93/318 (29%), Positives = 147/318 (46%), Gaps = 3/318 (0%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P + Y L D +G V+AE D PASLTK+MTAY++F L + L
Sbjct: 33 PLIPAPPELPAKAYLLQDFYSGRVLAERNADERLEPASLTKVMTAYILFRELAQGHVKLE 92
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+T+S+ A S + G+ ++++N LK +IV+S ND +VA+AE + E F Q
Sbjct: 93 DMVTVSEKAWRTEGSRMFAQVGAQISVENLLKGMIVQSGNDASVALAEHVAGDEAVFAQL 152
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN ++ LG++ THF N+ G+ HYTTARD+A L+ + +FPQY + IK
Sbjct: 153 MNQNAERLGMTNTHFKNSMGLPDPDHYTTARDLATLTRAMIKEFPQYYPWHAIKEFVFND 212
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
K N N + DG+KTG T +G+ ++ SA++ +++V+LG R +
Sbjct: 213 IKQVNRNRLLWRDPSVDGVKTGHTEGAGYCLITSAVRDGDRMVSVVLGTKSDTDRANANQ 272
Query: 258 SLLSMGFYNKTDRKKIN---YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
+LL+ GF + + K + EVP +E + +
Sbjct: 273 ALLNYGFRFFETKPVHKGGEELAKARIWKGEQTEVPVGVDEDLYATFPRGQFQNLKTAME 332
Query: 315 DKESHFIDFEKITLLKNK 332
K L +
Sbjct: 333 VDADAMAPVRKGDRLGSI 350
>gi|88800720|ref|ZP_01116279.1| D-alanyl-D-alanine carboxypeptidase [Reinekea sp. MED297]
gi|88776584|gb|EAR07800.1| D-alanyl-D-alanine carboxypeptidase [Reinekea sp. MED297]
Length = 394
Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats.
Identities = 90/337 (26%), Positives = 145/337 (43%), Gaps = 7/337 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+I A + P + A Y L+D TG V+ + PASLTKLMT+Y+
Sbjct: 17 FLIGITATCALAEPIIPAAPQLAATSYILMDAETGQVLVAHNEHEQMPPASLTKLMTSYI 76
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+ E + LT +SK A + P S + G +T+++ L+ +I+ S ND +VA+A
Sbjct: 77 AEREILEGRLELTDETLVSKKAWQMPGSRMFIEVGDLVTIEDLLRGVIIVSGNDASVALA 136
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGHYTTARDMAILSWRIKTDF 181
E + TE F Q MN ++NLG+ THF NA G+ HY++A D+A+LS + D
Sbjct: 137 EHIAGTEDLFAQLMNKYAENLGMINTHFSNASGLPPENGQEHYSSAYDLALLSQALIYDN 196
Query: 182 PQYMHYFQIKGLEIKGKK-YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
++ + + + PN N +GT DG+KTG T +G+ + ASA + LI
Sbjct: 197 AEFYPLYAERSFKYGPVSAQPNRNRLLGTNPDVDGLKTGHTEEAGYCLAASAERDGMRLI 256
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEEVC 297
+V++G + R + + LL+ GF + + E+ +
Sbjct: 257 SVVMGTRSEDARAQETQKLLTYGFRFFRTAEVHQGGESLHTMRIWGGATKELSLGLTDDL 316
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ E L I
Sbjct: 317 KLTIARGAEDMIRTELSIDSVIKAPVAAGDALGELIV 353
>gi|119896472|ref|YP_931685.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72]
gi|119668885|emb|CAL92798.1| probable D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72]
Length = 376
Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats.
Identities = 96/337 (28%), Positives = 155/337 (45%), Gaps = 6/337 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR ++ A + L+D NTG V+A N PD PASLTKLM
Sbjct: 1 MRFVFALLLSLFSLLAAAQSIPAPALAAKAWVLVDHNTGQVLAANDPDARIEPASLTKLM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAY+ FS LK L P+ +S+ A S + +T+ ++ +IV+S ND
Sbjct: 61 TAYLTFSALKAGTIALDQPVPVSERAWRQEGSRMFIEPQKPVTVQELIRGVIVQSGNDAC 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + TE+ F MN ++ LG+S THF N+ G+ YTTA+D+A+L+ I D
Sbjct: 121 VALAELIAGTEEAFAAMMNREAQRLGMSNTHFTNSTGLPDPQLYTTAKDLALLASAIIRD 180
Query: 181 FPQYM-HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
FP Y + +K PN N + DGMKTG T ++G+ +++SA++G + L
Sbjct: 181 FPDYYASLYSLKEYRYNNITQPNRNRLLWMDSTVDGMKTGHTSSAGYCLISSALRGPRRL 240
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE 295
++V+LGA R + S LL+ GF K + ++ + + +
Sbjct: 241 VSVVLGAESDTVRAQESLKLLNFGFQFFDTVKLYSADQALSQFRVWKGQANEVAAGFTSD 300
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + + ++ +K +
Sbjct: 301 FVISLPKG-QADKITATLESRQPVLAPLQKGQEIGTL 336
>gi|229543944|ref|ZP_04433003.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus coagulans 36D1]
gi|229325083|gb|EEN90759.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus coagulans 36D1]
Length = 387
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 88/351 (25%), Positives = 149/351 (42%), Gaps = 15/351 (4%)
Query: 1 MRQFLVIIAMAMLSN-------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M++ + ++ ML+ + L++ TG V+ P
Sbjct: 1 MKKIIGLVTCFMLAAGVLVPEAFAAEKKNELAPEAKSAILIEQATGEVLYSKNSHEELPP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS+TK+MT ++ L + + + + S+ A+ S + G MT++ LK + +
Sbjct: 61 ASMTKIMTMLLIMEALDKGEIKMDEKVRTSEYAASMGGSQIFLEPGEEMTVEQMLKGIAI 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AVA+AE + +E+ FV MN +K LGL THF N G+ GHY++A DMAI+
Sbjct: 121 GSANDAAVAMAERIGGSEEAFVDKMNERAKALGLKNTHFENVTGLPVKGHYSSAYDMAIM 180
Query: 174 SWRIKTDFPQYMHYFQI----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ ++ + + K NTN V + G DG+KTGFT + F +
Sbjct: 181 AKQLLKHHGITHFTGKYEDYLREGSDKKFWLVNTNKLVRHYPGVDGLKTGFTNEAKFCLT 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNL 285
A+A + +IAV+ GA RN + +L F T + ++
Sbjct: 241 ATAKKNGMRVIAVVFGAPSTKVRNAQVSKMLDYAFSQYTSHPLYKKGAALDQVKVSKGSM 300
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ SE V K+ + + K K K++ +K + +
Sbjct: 301 RHVRAVTSEPVSVLTKKGVKLSNLKKTVKLKKNVQAPVQKGDEIGTLTISQ 351
>gi|126665209|ref|ZP_01736192.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter sp. ELB17]
gi|126630579|gb|EBA01194.1| D-alanyl-D-alanine carboxypeptidase [Marinobacter sp. ELB17]
Length = 392
Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats.
Identities = 89/333 (26%), Positives = 152/333 (45%), Gaps = 6/333 (1%)
Query: 4 FLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
F+ + + + N + Y L++ +G VI EN PASLTK+M
Sbjct: 16 FVYTLLLVVAGNALAQTVLIPAPPQIAGSSYVLMEPKSGQVIMENNSSERLPPASLTKMM 75
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAY+V L E + + + IS A + S + ++G+++T+++ L+ ++++S ND +
Sbjct: 76 TAYIVERELDEGRIAMGDMVPISVTAWQTGGSRTFVREGTSVTVEDLLRGVVIQSGNDAS 135
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + +E FV MN + LG++ T+F NA G+ HY+TA+D+A+L+ D
Sbjct: 136 VALAEFVAGSEGAFVDIMNQQADLLGMTNTNFENATGLPSPNHYSTAQDLALLAQATIND 195
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+P+ + K + PN N + DG+KTG T +G+ +VASA + D I
Sbjct: 196 YPETYPIYAEKHFTFNNIRQPNRNSLLWRDNSVDGLKTGHTEEAGYCLVASAKRDDTRFI 255
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEEVC 297
AV++GA +R++ +L+ GF + + IK +N +P E
Sbjct: 256 AVVMGARSAESRSQEVQKMLNYGFRYYQSERLFSAGQELIKSPVWGGAANTLPVGVFEDV 315
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
N L
Sbjct: 316 YVTISRGARNQLESVIDLDSVVKAPVSAGDELG 348
>gi|260597233|ref|YP_003209804.1| D-alanyl-D-alanine carboxypeptidase fraction C [Cronobacter
turicensis z3032]
gi|260216410|emb|CBA29490.1| D-alanyl-D-alanine carboxypeptidase dacC [Cronobacter turicensis
z3032]
Length = 403
Score = 219 bits (556), Expect = 6e-55, Method: Composition-based stats.
Identities = 97/339 (28%), Positives = 155/339 (45%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++++++ P +A + L+D ++G V+AE D +PASLTKLMT+YV
Sbjct: 19 FLLMSLSTAHAADPIAPVAPDVDARAWILMDYHSGKVLAEGNADEKLDPASLTKLMTSYV 78
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAND 118
V LK K L +T+ K+A K G +++ + K +I++S ND
Sbjct: 79 VGQALKAGKIHLDDKVTVGKDAWATGNPALRGSSLMFLKPGDQVSVADLNKGVIIQSGND 138
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
++AIA+ + ++ FV MN +K LGL++T F HG+ G ++TARDMA+L +
Sbjct: 139 ASIAIADYVAGSQDAFVGLMNGYAKRLGLTSTTFKTVHGLDAPGQFSTARDMALLGKALI 198
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N + + DGMKTG T +G+N+VASA QGD
Sbjct: 199 HDVPDEYAIHKEKEFTFNKIRQPNRNRLLWSSSMNVDGMKTGTTAGAGYNLVASATQGDM 258
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNIS 293
LI+V+LGA R + S LL+ GF I + + + S
Sbjct: 259 RLISVVLGAKTDGIRFRESEKLLTWGFRFFETVTPIKPDAAFVNQRVWFGDSSEVKLGAG 318
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
E T + N + ++ ++
Sbjct: 319 EAGSVTIPKGQLKNLKATYTLTSPQLTAPLKQGQVVGTI 357
>gi|213648937|ref|ZP_03378990.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
Length = 387
Score = 219 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDM 255
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + + +
Sbjct: 256 RLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKREVNLGAG 315
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 316 DAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 354
>gi|228909907|ref|ZP_04073728.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis IBL 200]
gi|228849742|gb|EEM94575.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis IBL 200]
Length = 396
Score = 219 bits (556), Expect = 7e-55, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|15614098|ref|NP_242401.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Bacillus halodurans C-125]
gi|10174152|dbj|BAB05254.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Bacillus halodurans C-125]
Length = 387
Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats.
Identities = 85/351 (24%), Positives = 158/351 (45%), Gaps = 15/351 (4%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWNP 53
MR L I+++ ++ + + +A + +++ +TG V+ E D P
Sbjct: 1 MRVILSSIVSVCLVVGMIAPVGLAAEKQPNLAKEASSAIVIERDTGQVLFEKNSDEKLPP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS+TK+MT ++ + K + S+NA+ S + G M++ + +K + +
Sbjct: 61 ASMTKIMTLLLIMEAIDSGKITYDDMVRTSENAASMGGSQVFLEPGEEMSVRDMIKAIAI 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND +VA+AE L TE++FV MN ++ LGL T+F+N +G+ + HYT+A D+A++
Sbjct: 121 ASGNDASVAMAEHLAGTEEEFVGMMNEKARQLGLKNTNFVNTNGLPEKDHYTSAYDLAMI 180
Query: 174 SWRIKTDFPQYM----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
S + + ++ K NTN V + G DG+KTGFT + + +
Sbjct: 181 SKELLKYEDITEFTSVYEDYLRKGTDKEFWLVNTNRLVKFYPGVDGLKTGFTKEAKYCLT 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNL 285
A+A++ +I V++GA RN +L F + + + N
Sbjct: 241 ATAVKNGMRVITVVMGAPTPKERNSQITEMLDFAFSQYQTHQVYERDTYMMDLNVRKGNK 300
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ SE V K+ + + + + KES K ++ ++
Sbjct: 301 KSVPIFTSESVSLVTKKGESIDNVTERVEWKESLLAPVHKGDVVGTLYLER 351
>gi|213428063|ref|ZP_03360813.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
Length = 402
Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDM 255
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + + +
Sbjct: 256 RLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKREVNLGAG 315
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 316 DAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 354
>gi|323493053|ref|ZP_08098187.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546]
gi|323312701|gb|EGA65831.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546]
Length = 398
Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats.
Identities = 100/340 (29%), Positives = 145/340 (42%), Gaps = 10/340 (2%)
Query: 4 FLVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
L ++++ + P + Y LLD +TG V+ E D NPASLTKLMTA
Sbjct: 21 LLSTLSLSFGAFAAPTIIPDPPALGAKGYILLDYHTGTVLVEKNADKKLNPASLTKLMTA 80
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV +K L + IS+NA S + G+ + L + + LIV+S ND
Sbjct: 81 YVAGQEVKSGNISLDDQVRISRNAWAKNFPDSSKMFIEVGTDVELMDLYRGLIVQSGNDA 140
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+VAIAE + +E FV MN+ S+ LGL T + N HG+ G Y+T D+A LS I
Sbjct: 141 SVAIAEHVAGSEDAFVSLMNSWSQKLGLENTAYTNPHGLDSQGLYSTPHDIARLSQAIIR 200
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P + G N N L DGMKTG+T +G+++ SA GD
Sbjct: 201 DLPDIYPLYSETAFTYNGITQYNRNGLLRDRSLNVDGMKTGYTSGAGYSLATSATNGDMR 260
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
L++V++G+ +R S LLS GF + + I E
Sbjct: 261 LVSVVMGSSSTKSRESESKQLLSYGFRFFDTVSPTKVTDTLAEAKVWMGTVDAVPVGIEE 320
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
V T + + + + EK + I
Sbjct: 321 PVLITLPKGDAKKLKAEI-EYAGELEAPIEKGQPVGQVIY 359
>gi|224825266|ref|ZP_03698371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lutiella nitroferrum
2002]
gi|224602187|gb|EEG08365.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lutiella nitroferrum
2002]
Length = 380
Score = 218 bits (555), Expect = 8e-55, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 155/344 (45%), Gaps = 11/344 (3%)
Query: 1 MRQFLVIIAMA------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ ++ A + PF+ Y L+D +G V+A + PD PA
Sbjct: 1 MKKLTSLLVAAAVALPSVSFANAPFVPPVPEIAGKAYYLVDFYSGQVVASSDPDKRIAPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTKLMT Y+ + +KEK+ L +T+S S +++D+ +K + V+
Sbjct: 61 SLTKLMTGYLTYKAIKEKRLTLDQKLTVSHKGWTTGGSRMFLDPKIPVSVDDLIKGMDVQ 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND V +AE++ +E+ F Q M ++ LG++ T F NA G+ HYTT D+ IL+
Sbjct: 121 SGNDACVTLAEAIAGSEEAFGQMMTAEARRLGMNNTQFRNATGLPNPEHYTTVHDLGILA 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
I ++P++ + +K G PN N + DGMKTGFT +G+N+VAS+ +
Sbjct: 181 SAIIREYPEFYKTYSLKSFTYNGISQPNRNLLLYRDPNVDGMKTGFTDDAGYNMVASSRR 240
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVP 290
+ +I+V++G R S+ LL+ G K Y+ +
Sbjct: 241 DGRRVISVVVGTASPEARAVESSKLLNYGLQFFDTPKLYAASKPVSEIPVYKGDAKKLPI 300
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ +V TT + + + + + ++ +
Sbjct: 301 GFASDVYTTVLKGQSAQLKADLTTSQPVI-APIKAGQVVGKLVV 343
>gi|281416991|ref|ZP_06248011.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
JW20]
gi|281408393|gb|EFB38651.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
JW20]
Length = 384
Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats.
Identities = 91/342 (26%), Positives = 146/342 (42%), Gaps = 14/342 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
VI M+ + F + L++ +TG V+ E D P PAS+TK+MT
Sbjct: 13 LAVITFFVMMFQVTAF--AQFESSAQSAILIEASTGQVLYEKNADVPMPPASITKIMTLL 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ F L++ + IS+ A S G + + V SAND VA+
Sbjct: 71 LGFEALEKGLVKWDDEVIISEKAWRMEGSKMFLLVGDKAKFGEIMTGISVVSANDGCVAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE L +E+ FVQ MN +K LGL+ T+F N++G+ GH +ARD++ L+ + ++P+
Sbjct: 131 AEHLYGSEEAFVQVMNTRAKELGLTNTNFANSNGLPAEGHVMSARDISTLARYLIQNYPK 190
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + N N +G F GADG+KTG+T +G+ IV +A Q Q +I V+
Sbjct: 191 ILELESTTEYTYNNIRQFNRNPLLGVFPGADGLKTGWTEEAGYCIVGTAQQNGQRMIGVV 250
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTT 299
L R+K LL+ GF N N + + + ++ T
Sbjct: 251 LKTSSEKERSKAIQELLNYGFKNFKQVTVKNAGEIVDSIEVKNGKKLSVSLKLDSDISTV 310
Query: 300 QKEIINYNTQMKEAKDKESHFIDF--------EKITLLKNKI 333
+ Q+ +K E ++ L I
Sbjct: 311 IPVGRENDLQIVTSKKAEFLNAPVSLDIPAGTVEVQLDGKTI 352
>gi|312793772|ref|YP_004026695.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180912|gb|ADQ41082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 386
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 86/350 (24%), Positives = 152/350 (43%), Gaps = 19/350 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-------------IAETNKLPYYTLLDTNTGHVIAENYP 47
MR+ + + + ++ ++ + L+D +TG ++ E
Sbjct: 1 MRKTITFLIVFLMLFGNSHIACKKVFGESLQTQTPSLEISAKSAILVDFDTGRILYEKNS 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+PAS+TK+MT ++ +++ + L+ + S+NAS S K+ MT++
Sbjct: 61 HEKLSPASITKIMTMILICEAIEKGRIKLSDRVVASQNASSLGGSQVYLKENEEMTVEEL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
LK + + SAND VA+AE + + ++FV MN +K LG+ T+F+N +G+ HYT+A
Sbjct: 121 LKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGMLDTNFVNPYGLDAENHYTSA 180
Query: 168 RDMAILSWRIK-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
D+AI+S + + + + NTN V + G G+KTG T + F
Sbjct: 181 YDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNTNKLVRFYRGCTGVKTGSTDKAKF 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQ 282
+ ASA++ LIAVI+GA D TR + LL GF N + +
Sbjct: 241 CVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWGFANFSMYSPYSKGYCFGKVKIKN 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+S +V K+ + K A ++ + +
Sbjct: 301 GIEKEVEAILSTDVKLLVKKGDESTVESKVALPQQ-ISAPVKAGQKIGKL 349
>gi|152981033|ref|YP_001354938.1| D-alanyl-D-alanine carboxypeptidase [Janthinobacterium sp.
Marseille]
gi|151281110|gb|ABR89520.1| D-alanyl-D-alanine carboxypeptidase (peptidase family s11)
[Janthinobacterium sp. Marseille]
Length = 382
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 107/344 (31%), Positives = 175/344 (50%), Gaps = 13/344 (3%)
Query: 1 MRQFLVIIAMAMLS--NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ L IA +LS + F + T + LLD + V+A N PD PASLTK
Sbjct: 1 MKKLLAAIAATVLSLSSAFAQSVPSPTINAKSWLLLDATSNQVLASNEPDMRIEPASLTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSA 116
LMTAYV F+ +++KK L ITIS NA + P S + + +++ L LIV+S
Sbjct: 61 LMTAYVAFTAIQDKKLDLNQMITISTNAWKVDPSSSKMFIEPRVPVKVNDLLYGLIVQSG 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND AVAIAE++ TE FV MN ++ +G+ +THF N HG+ +Y+TARD+++L+
Sbjct: 121 NDAAVAIAEAVAGTEDAFVALMNREAERMGMKSTHFANPHGLPSASNYSTARDLSVLASH 180
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-- 234
+ D P++ + K K PN N + DGMKTG+T +G+ ++++A +
Sbjct: 181 LINDHPEFYKIYSTKEYTYNNIKQPNRNRLLWLDPTVDGMKTGYTQGAGYCLISTAKRPN 240
Query: 235 --GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNE 288
G++ LI+V+LG + R + S LL+ GF N K + ++ ++
Sbjct: 241 GTGERRLISVVLGTISDQARAQESQKLLNWGFLNFDTVKLYAKNEPIATPNVWKGTQNSI 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +V T + + + A+ K+ +K + +
Sbjct: 301 KIGFTRDVYITVPKGVANTMKPVLAR-KDPLVAPIDKNSQVGTI 343
>gi|75762410|ref|ZP_00742280.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|218899237|ref|YP_002447648.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
G9842]
gi|228967109|ref|ZP_04128145.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar sotto str. T04001]
gi|74490103|gb|EAO53449.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|218543204|gb|ACK95598.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
G9842]
gi|228792478|gb|EEM40044.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar sotto str. T04001]
Length = 396
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + I S+ V K+ + + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKIDLVASDNVSLLMKKGESMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|34498549|ref|NP_902764.1| D-ala-D-ala-carboxypeptidase [Chromobacterium violaceum ATCC 12472]
gi|34104404|gb|AAQ60762.1| D-ala-D-ala-carboxypeptidase [Chromobacterium violaceum ATCC 12472]
Length = 381
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 91/344 (26%), Positives = 150/344 (43%), Gaps = 11/344 (3%)
Query: 1 MRQFLVIIAMAMLSNIF------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ + + L+ F+ Y LLD N+ V+A PD PA
Sbjct: 1 MKKLTTALVASALALPSLGFANTAFVPPTPEIAGKAYYLLDYNSQQVLAARDPDARIEPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTKLMTAY+ F LKEK+ L +T+S+ + S +D+ +K +IV+
Sbjct: 61 SLTKLMTAYLTFKALKEKRLSLEQTLTVSQRGWKTEGSRMFLDPKVPAKVDDLIKGMIVQ 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND V +AE++ +E F Q M + LG+ T F NA G+ GHYTT D+ IL+
Sbjct: 121 SGNDACVTLAEAIAGSEDVFGQLMTQQALKLGMKNTQFKNATGLPHEGHYTTVHDLGILA 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ D+P++ + +K K PN N + DGMKTG+T ++G+N+V S+ +
Sbjct: 181 AALIRDYPEFYPIYSMKSFTYNNIKQPNRNLLLYRDPNVDGMKTGYTDSAGYNMVTSSHR 240
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVP 290
+ +I+V++G R S+ LL+ G K + Y+ +
Sbjct: 241 DGRRVISVVVGTASPEARAVESSKLLNYGLQFFDTPKLYAANTRVSDVSVYKGSEKIVPV 300
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+V T + + + + ++
Sbjct: 301 GFGSDVFATVAKGQAAKLKADMTTMQP-LIAPIKAGQVVGKLTV 343
>gi|218230756|ref|YP_002368880.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
B4264]
gi|218158713|gb|ACK58705.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
B4264]
Length = 396
Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGGALGTLVIKK 360
>gi|90416209|ref|ZP_01224141.1| D-ala-D-ala-carboxypeptidase [marine gamma proteobacterium
HTCC2207]
gi|90331934|gb|EAS47148.1| D-ala-D-ala-carboxypeptidase [marine gamma proteobacterium
HTCC2207]
Length = 391
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 153/349 (43%), Gaps = 18/349 (5%)
Query: 1 MRQFLVIIAMAMLSN-------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++++LV A +LS + Y L+D NTGH++ EN D P P
Sbjct: 2 LKKYLVSFAAIVLSLQGLSAVQAQQLIPAPPELAAKAYILIDANTGHILVENNADMPLPP 61
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKGSTMTLDNAL 108
ASL K+MT Y+V + + + + IS NA + S + +++ + +
Sbjct: 62 ASLVKMMTTYIVSNEIAAGRMSKDETVLISDNAWEKGGAKTDGSTMFLNPRTRVSVSDLM 121
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ +I++S ND ++A+AE + E F MN+ + LG+ +T ++N+ G+ G +TAR
Sbjct: 122 RGVIIQSGNDASIALAEHISGDEAAFADVMNHQASLLGMDSTQYLNSTGLPYEGMVSTAR 181
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
D+++L+ I D P++ + K + PN N + DG+KTG T A+G+ +
Sbjct: 182 DLSLLARAIIQDHPEHYSIYSEKYFKYNNINQPNRNRLLWRDSSVDGLKTGHTNAAGYCL 241
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII-----KDFYQQ 283
V+SA + D LI+V++GA R + + LLS GF + + + +
Sbjct: 242 VSSAKRRDMRLISVVMGADSDKARARETQKLLSYGFRHYDTKTIYSAGDILKENAKVWYG 301
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
I+E V T D E L
Sbjct: 302 EEGFLNLTIAENVTLTLPRGAQKELSANILVD-EQIKAPIAAGQELGRL 349
>gi|269467932|gb|EEZ79667.1| D-alanyl-D-alanine carboxypeptidase [uncultured SUP05 cluster
bacterium]
Length = 379
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 103/340 (30%), Positives = 158/340 (46%), Gaps = 6/340 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
++ + ++A+A + A + Y +LD N+G VIA + P PAS
Sbjct: 8 KKLIKLLAIATSVVTLNTQAAIFITPKAPSISASSYIVLDYNSGKVIASHKPHDKRAPAS 67
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
LTKLMTAYVVF +K+ +A L + ISK A + S S + G T+ L LK +I++S
Sbjct: 68 LTKLMTAYVVFQLIKDGRASLEDDVRISKKAWKTMGSKSFVEVGKTIKLKILLKGMIIQS 127
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND AVA+AE + TE F +MN + LG++ T F NA G+ +TTA DMA L+
Sbjct: 128 GNDAAVALAEHIAGTEGTFTAYMNQYAAELGMNNTRFENASGLDYKDQHTTASDMAKLAS 187
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
DFP++ ++ K K N N + + DG+KTGFT + +N+VASA +
Sbjct: 188 ATIRDFPEFYPWYSEKEFTYHDIKQRNRNKLLWSDNTVDGLKTGFTEKAQYNLVASANRM 247
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
LI+V+LG+ +R + +L GF R K + +E+ +
Sbjct: 248 GMRLISVVLGSSSGESRTAQTQKVLDYGFRFFETRIIDKINQKIPIANSTKDEIKVSLKN 307
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
Y + K + K + + K
Sbjct: 308 STNVTLPRGQYKLSQQAIKLNANLSAPINKGDSVGYLVIK 347
>gi|323227523|gb|EGA11683.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
Length = 402
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDM 255
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + + +
Sbjct: 256 RLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKPEVNLGAG 315
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 316 DAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 354
>gi|297529521|ref|YP_003670796.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3]
gi|297252773|gb|ADI26219.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3]
Length = 391
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 143/320 (44%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
++ L++ +TG V+ E P PAS+TK+MT +V + E K + S+
Sbjct: 36 ADEAKSAILIERDTGKVLYEKNAHEPLPPASMTKIMTMLLVMEAIDEGKLSYDEKVRASE 95
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ S + G MT+D L+ + + SAND +VA+AE + +E+ FV+ MN +K
Sbjct: 96 YAASMGGSQIFLEPGEEMTVDELLRGIAIGSANDASVAMAEQIAGSEEAFVEMMNEKAKQ 155
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----KGLEIKGKKY 200
LGL THF NA G+ HY++A DMA+++ + + + + K
Sbjct: 156 LGLKNTHFANATGLPAEHHYSSAYDMAMMARELLKYEDITKYTSKYEDYLRENTDKKFWL 215
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTG+T + + + A+A + +IAV+ GA +RN +L
Sbjct: 216 VNTNRLVKFYPGVDGLKTGYTAEAKYCLTATAKKNGMRVIAVVFGAPTPKSRNAQITKML 275
Query: 261 SMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
F + + S+ SE V K+ + K K K
Sbjct: 276 DYAFSQYRTHPVYKRNETVARVNISKGKRSSVEAVTSEPVSVLTKKGQSVEQIEKVIKVK 335
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ K L I K+
Sbjct: 336 DNVKAPVRKGGELGVLILKQ 355
>gi|30022162|ref|NP_833793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|29897719|gb|AAP10994.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
Length = 396
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKVDGVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|206971113|ref|ZP_03232064.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
AH1134]
gi|228960342|ref|ZP_04121995.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|229129356|ref|ZP_04258327.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus BDRD-Cer4]
gi|229152278|ref|ZP_04280471.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus m1550]
gi|296504570|ref|YP_003666270.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
gi|206733885|gb|EDZ51056.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
AH1134]
gi|228631240|gb|EEK87876.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus m1550]
gi|228653961|gb|EEL09828.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus BDRD-Cer4]
gi|228799366|gb|EEM46330.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|296325622|gb|ADH08550.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
Length = 396
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|228954361|ref|ZP_04116387.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228805293|gb|EEM51886.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar kurstaki str.
T03a001]
Length = 396
Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRIISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|67906493|gb|AAY82600.1| predicted penicillin-binding protein 6 precursor [uncultured
bacterium MedeBAC35C06]
Length = 380
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 91/338 (26%), Positives = 158/338 (46%), Gaps = 7/338 (2%)
Query: 1 MRQFLVI--IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ L + + F++ A L Y L++ TG VIAE D PAS+TK
Sbjct: 1 MKKLLTLLLFTSCLELYSQSFVAPAPKLDLKAYILIEPQTGTVIAEYNSDLHVEPASMTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT YVV + L + IS+ A S + G +++++ LK +I++S ND
Sbjct: 61 IMTGYVVADQIGNDLINLNDSVLISERAWRMGGSKMFIEAGKRVSVEDLLKGVIIQSGND 120
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA+AE TE+ FV MN +++LG++ T F+N+ G+ GHY++A+D+A L+
Sbjct: 121 ASVALAEYSGGTEEGFVDLMNAYAQSLGMNNTTFLNSTGLPAEGHYSSAKDLAYLTSNFI 180
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FP+ ++ K E K N N + +DG+KTG T ++G+ +V SA +G
Sbjct: 181 NKFPEIYSLYKEKSFEFNSIKQLNRNKLLWRDDSSDGVKTGHTESAGYCLVGSAKRGGMR 240
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE 294
LI V+ G+ R + LL GF + ++ + + S ++
Sbjct: 241 LITVVAGSSSDKKRFDDTQRLLEYGFRFFSTQEVLKKDQVYKTVKVWGGQKSEAGLGVAA 300
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + + Q+ K + +K ++ +
Sbjct: 301 NQILTLPRVDFKDLQINYI-YKNNIQAPIKKGDVIGSI 337
>gi|134096155|ref|YP_001101230.1| D-alanyl-D-alanine carboxypeptidase [Herminiimonas arsenicoxydans]
gi|133740058|emb|CAL63109.1| Putative penicillin-binding (D-alanyl-d-alanine carboxypeptidase)
transmembrane protein [Herminiimonas arsenicoxydans]
Length = 382
Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats.
Identities = 98/344 (28%), Positives = 173/344 (50%), Gaps = 13/344 (3%)
Query: 1 MRQFLVIIAMAMLS--NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ +A+A+LS F + A T + LLD + ++A N D PASLTK
Sbjct: 1 MKKLFAALAVAVLSLSTAFAQVVPAPTIAAKSWLLLDATSNQILASNEADVRIEPASLTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS--NSTFKKGSTMTLDNALKLLIVKSA 116
LMTAYV FS +++K+ L IT+S NA + P + +++++ L LIV+S
Sbjct: 61 LMTAYVAFSAIQDKRIALNQMITVSTNAWKVDPESSKMFIEPRVPVSVNDLLYGLIVQSG 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND AVA+AE++ TE F MN ++ +G+ +T F N HG+ +Y+TARD+A+L+
Sbjct: 121 NDAAVALAEAVAGTEDAFAALMNREAERMGMKSTRFANPHGLPSPNNYSTARDLAVLATH 180
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-- 234
+ +D P++ + K K N N + DGMKTG+T +G+ ++++A +
Sbjct: 181 LVSDHPEFYKIYSTKDFTYNKIKQSNRNRLLWLDPTVDGMKTGYTQNAGYCLISTAKRPN 240
Query: 235 --GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNE 288
++ LI+V++G R + S LL+ GF N K + + + ++ + +
Sbjct: 241 GANERRLISVVIGTASDQARAQESQKLLNWGFQNFDAVKLYSKDVAIDTPNVWKGSQNKI 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +V T + + + A+ K+ +K + +
Sbjct: 301 KIGFTRDVFVTVPKGMAGKIKPVLAR-KDPLVAPIDKNSPVGTV 343
>gi|217961569|ref|YP_002340139.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
AH187]
gi|222097526|ref|YP_002531583.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
gi|217065681|gb|ACJ79931.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
AH187]
gi|221241584|gb|ACM14294.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
Length = 396
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMAKELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|228941227|ref|ZP_04103780.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228974159|ref|ZP_04134729.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228980751|ref|ZP_04141056.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis Bt407]
gi|228778920|gb|EEM27182.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis Bt407]
gi|228785499|gb|EEM33508.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228818386|gb|EEM64458.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326941850|gb|AEA17746.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 396
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|330445965|ref|ZP_08309617.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
protein 5 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490156|dbj|GAA04114.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
protein 5 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 391
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/356 (26%), Positives = 156/356 (43%), Gaps = 20/356 (5%)
Query: 1 MRQFLVIIAM----------AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
M++ + ++ + A T Y L+D NTG V+ E +
Sbjct: 1 MKKTSPLFSLVGVTALCTVSFSALAAPSVIPDAPTLSAKGYVLMDYNTGQVLVEKNANEK 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNA 107
NPASLTKLMT+YV +K+ + IS+NA S + GS + L +
Sbjct: 61 LNPASLTKLMTSYVAGQEMKQGNISKDDVVVISRNAWARNFPDSSKMFIEVGSEVPLMDL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+ LI++S ND +VAIAE + +E+ FV MN+ +K LG++++HF N HG+ YTT
Sbjct: 121 FRGLIIQSGNDASVAIAEHVAGSEQAFVGLMNSWAKKLGMNSSHFANPHGLDHGDLYTTP 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGF 226
D+A+L + D P + K N N + DGMKTG+T +G+
Sbjct: 181 YDIALLGQALIRDLPNIYPLYSEKSFTYNNITQRNRNGLLHDKSMNVDGMKTGYTSGAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD------F 280
++ +SA +GD LIAV++G R S +LL+ GF K F
Sbjct: 241 SLTSSATEGDMRLIAVVMGTKSTKIRESESKALLNYGFRFFETVVPHKAGDKIISERVWF 300
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + S V ++ + ++ + ++ E++ + + K
Sbjct: 301 GNKENVELGVDKSSYVTLSRNDTKKLTASVELNGELDAPIAKGEEVGKVLYLVDGK 356
>gi|56420846|ref|YP_148164.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus
HTA426]
gi|261417853|ref|YP_003251535.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61]
gi|319767335|ref|YP_004132836.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52]
gi|56380688|dbj|BAD76596.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Geobacillus kaustophilus HTA426]
gi|261374310|gb|ACX77053.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61]
gi|317112201|gb|ADU94693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52]
Length = 391
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 143/320 (44%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
++ L++ +TG V+ E P PAS+TK+MT +V + E K + S+
Sbjct: 36 ADEAKSAILIERDTGKVLYEKNAHEPLPPASMTKIMTMLLVMEAIDEGKLSYDEKVRASE 95
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ S + G MT+D L+ + + SAND +VA+AE + +E+ FV+ MN +K
Sbjct: 96 YAASMGGSQIFLEPGEEMTVDELLRGIAIGSANDASVAMAEQIAGSEEAFVEMMNEKAKQ 155
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----KGLEIKGKKY 200
LGL THF NA G+ HY++A DMA+++ + + + + K
Sbjct: 156 LGLKNTHFANATGLPAEHHYSSAYDMAMMARELLKYEDITKYTSKYEDYLRENTDKKFWL 215
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTG+T + + + A+A + +IAV+ GA +RN +L
Sbjct: 216 VNTNRLVKFYPGVDGLKTGYTAEAKYCLTATAKKNGMRVIAVVFGAPTPKSRNAQITKML 275
Query: 261 SMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
F + + S+ SE V K+ + K K K
Sbjct: 276 DYAFSQYRTHPVYKRNETVARVNISKGKRSSVEAVTSEPVSVLTKKGQSVEQIEKVIKVK 335
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ K L I K+
Sbjct: 336 DNVKAPVRKGDELGVLILKQ 355
>gi|261367341|ref|ZP_05980224.1| serine-type D-Ala-D-Ala carboxypeptidase [Subdoligranulum variabile
DSM 15176]
gi|282570101|gb|EFB75636.1| serine-type D-Ala-D-Ala carboxypeptidase [Subdoligranulum variabile
DSM 15176]
Length = 405
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 94/323 (29%), Positives = 151/323 (46%), Gaps = 8/323 (2%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
I P + L+D ++G V+ E D AS+TK+MT + F L+ +K
Sbjct: 42 TITPAGTSEFDVPCEAAILVDEDSGTVLYEKNADEQRPIASITKVMTLLLTFQALESRKI 101
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L + +S++A S + G MTL++ LK + V SAND AVA+AE + +E F
Sbjct: 102 SLEDNVPVSEHAYSMGGSQIWLEPGEQMTLNDMLKAICVSSANDAAVAVAEFVGGSEPAF 161
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
VQ MN T+ LG+++THF NA G+ Q GH ++ARD+AI+S + + Y I
Sbjct: 162 VQMMNETAAQLGMTSTHFENACGLDQEGHLSSARDVAIMSREMLLHHTEVRDYCSIWTDT 221
Query: 195 --IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ NTN + ++ G G+KTG T +G I ASA + LIAV+LG+ R
Sbjct: 222 LRNGATQLVNTNKLLKSYNGITGLKTGTTSKAGVCISASAERNGLRLIAVVLGSASGKER 281
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK------EIINY 306
+ + +LL GF N + ++ E T QK + N
Sbjct: 282 FQAATALLDYGFANFENITAELPDDAPQTIPVTRGTADAVALEYDTPQKCLVPKGQGENL 341
Query: 307 NTQMKEAKDKESHFIDFEKITLL 329
+++ + ++ ++ +
Sbjct: 342 RIEVELPQTLQAPVKAGSQVGTV 364
>gi|125972794|ref|YP_001036704.1| penicillin-binding protein 6 [Clostridium thermocellum ATCC 27405]
gi|256004983|ref|ZP_05429955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
DSM 2360]
gi|125713019|gb|ABN51511.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Clostridium thermocellum ATCC 27405]
gi|255991052|gb|EEU01162.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
DSM 2360]
gi|316940970|gb|ADU75004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
DSM 1313]
Length = 384
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 91/342 (26%), Positives = 146/342 (42%), Gaps = 14/342 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
VI M+ + F + L++ +TG V+ E D P PAS+TK+MT
Sbjct: 13 LAVITFFVMMFQVKAF--AQFESSAQSAILIEASTGQVLYEKNADVPMPPASITKIMTLL 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ F L++ + IS+ A S G + + V SAND VA+
Sbjct: 71 LGFEALEKGLVKWDDEVIISEKAWRMEGSKMFLLVGDKAKFGEIMTGISVVSANDGCVAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE L +E+ FVQ MN +K LGL+ T+F N++G+ GH +ARD++ L+ + ++P+
Sbjct: 131 AEHLYGSEEAFVQVMNTRAKELGLTNTNFANSNGLPAEGHVMSARDISTLARYLIQNYPK 190
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + N N +G F GADG+KTG+T +G+ IV +A Q Q +I V+
Sbjct: 191 ILELESTTEYTYNNIRQFNRNPLLGVFPGADGLKTGWTEEAGYCIVGTAQQNGQRMIGVV 250
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTT 299
L R+K LL+ GF N N + + + ++ T
Sbjct: 251 LKTSSEKERSKAIQELLNYGFKNFKQVTVKNAGEIVDSIEVKNGKKLSVSLKLDSDISTV 310
Query: 300 QKEIINYNTQMKEAKDKESHFIDF--------EKITLLKNKI 333
+ Q+ +K E ++ L I
Sbjct: 311 IPVGRENDLQIVTSKKAEFLNAPVSLDIPAGTVEVQLDGKTI 352
>gi|161503974|ref|YP_001571086.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865321|gb|ABX21944.1| hypothetical protein SARI_02067 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 400
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/340 (27%), Positives = 149/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+++ A + L+D +G V+AE D +PASLTK+MT+Y
Sbjct: 15 LVLLFLFASSVKAEEQTIAPPDVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSY 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAN 117
VV LK K LT +T+ K+A K G +++ + K +I++S N
Sbjct: 75 VVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGN 134
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 135 DACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKAL 194
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
D P + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 195 IHDVPDEYALHKEKEFTFNNIRQPNRNRLLWSTNLQVDGMKTGTTSGAGYNLVASATQGD 254
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNI 292
LI+V+LGA R S LL+ GF I + + + +
Sbjct: 255 MRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDQREVNLGA 314
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 315 GDAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQIVGTI 354
>gi|229146650|ref|ZP_04275017.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus BDRD-ST24]
gi|228636820|gb|EEK93283.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus BDRD-ST24]
Length = 396
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGKKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|324327983|gb|ADY23243.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 396
Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats.
Identities = 96/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQDKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMAKELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + I S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKIDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|238893899|ref|YP_002918633.1| D-alanyl-D-alanine carboxypeptidase fraction C [Klebsiella
pneumoniae NTUH-K2044]
gi|238546215|dbj|BAH62566.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 428
Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 159/338 (47%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ +A L A + + L+D +G V++E D +PASLTK+MT+YVV
Sbjct: 45 LLFLVAPAVQAAEQLPDAPSINARAWILMDYASGKVLSEGNADEKLDPASLTKIMTSYVV 104
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+K K LT +T+ ++A S K G +++++ K +I++S ND
Sbjct: 105 GQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGVIIQSGNDA 164
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
++AIA+ + ++ FV MN +K +GL+ T FM HG+ G ++TARDMA+L+ +
Sbjct: 165 SIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALLTKAMIH 224
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L ADG+KTG T +G+N+V+SA QGD
Sbjct: 225 DVPEEYAVHKEKEFTFNKIRQPNRNRLLWSSNLNADGVKTGTTAGAGYNLVSSATQGDMR 284
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LIAV+LG R S LL+ GF I + + + + + E
Sbjct: 285 LIAVVLGTKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDSNEAKLGAGE 344
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + ++ EK ++
Sbjct: 345 AGSITLPKGQLKNLKASYTLNQPQLTAPLEKGQVVGTI 382
>gi|188025727|ref|ZP_02959597.2| hypothetical protein PROSTU_01468 [Providencia stuartii ATCC 25827]
gi|188020262|gb|EDU58302.1| hypothetical protein PROSTU_01468 [Providencia stuartii ATCC 25827]
Length = 402
Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 86/329 (26%), Positives = 144/329 (43%), Gaps = 11/329 (3%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K
Sbjct: 32 FPNSPVPAVPEIDAEAYILIDYNSGKVLAEKNADQRRDPASLTKMMTSYVIGQAIKSGKI 91
Query: 75 MLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+T++++A K G +++ + + ++S ND VA+A+ +
Sbjct: 92 GAEDIVTVNEDAWATGNPIFKGSSLMFLKPGDRVSVSQLTRGINLQSGNDACVAMADYVA 151
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ F+Q MN LGL THF HG+ G Y++ARDMA+L + D P +
Sbjct: 152 GDQANFIQLMNGYVSKLGLQNTHFQTVHGLDAEGQYSSARDMALLGQALIRDVPDEYAIY 211
Query: 189 QIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ K + N N L DG+KTG T A+G+N+VASA +G LI+V++G
Sbjct: 212 KEKEFTFNNIRQTNRNGLLWDKSLSVDGIKTGHTNAAGYNLVASATEGQMRLISVVMGGK 271
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEI 303
R+ S LL+ GF K + + + + + +N ++E++ T
Sbjct: 272 SMKGRDAESKKLLTYGFRFYETVKPLQAGVEFASEPVWFGDENNVKLGVTEDLFLTIPRG 331
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + +K +
Sbjct: 332 RLKDLKASYDISTSELEAPLKKGQAVGTI 360
>gi|42783191|ref|NP_980438.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
gi|229174752|ref|ZP_04302276.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus MM3]
gi|42739119|gb|AAS43046.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
gi|228608742|gb|EEK66040.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus MM3]
Length = 396
Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMAKELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|30264153|ref|NP_846530.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Ames]
gi|47529591|ref|YP_020940.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186984|ref|YP_030236.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
Sterne]
gi|49478519|ref|YP_038135.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141418|ref|YP_085412.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
gi|165871194|ref|ZP_02215844.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0488]
gi|167633524|ref|ZP_02391848.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0442]
gi|167639446|ref|ZP_02397717.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0193]
gi|170687106|ref|ZP_02878324.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0465]
gi|170705633|ref|ZP_02896096.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0389]
gi|177652667|ref|ZP_02935083.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0174]
gi|190566126|ref|ZP_03019045.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
Tsiankovskii-I]
gi|196034968|ref|ZP_03102375.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus W]
gi|196038612|ref|ZP_03105920.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
NVH0597-99]
gi|196045795|ref|ZP_03113024.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
03BB108]
gi|218905213|ref|YP_002453047.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
AH820]
gi|225866062|ref|YP_002751440.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
03BB102]
gi|227816855|ref|YP_002816864.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. CDC 684]
gi|228916716|ref|ZP_04080281.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|229602274|ref|YP_002868377.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0248]
gi|254683845|ref|ZP_05147705.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
CNEVA-9066]
gi|254721680|ref|ZP_05183469.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. A1055]
gi|254736192|ref|ZP_05193898.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
Western North America USA6153]
gi|254744081|ref|ZP_05201764.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Kruger
B]
gi|254754139|ref|ZP_05206174.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
Vollum]
gi|254758171|ref|ZP_05210198.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
Australia 94]
gi|301055572|ref|YP_003793783.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
gi|30258798|gb|AAP28016.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. Ames]
gi|47504739|gb|AAT33415.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. 'Ames Ancestor']
gi|49180911|gb|AAT56287.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
Sterne]
gi|49330075|gb|AAT60721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974887|gb|AAU16437.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
gi|164713113|gb|EDR18640.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0488]
gi|167512505|gb|EDR87880.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0193]
gi|167530930|gb|EDR93617.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0442]
gi|170129173|gb|EDS98037.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0389]
gi|170668723|gb|EDT19468.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0465]
gi|172082002|gb|EDT67070.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0174]
gi|190563045|gb|EDV17011.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
Tsiankovskii-I]
gi|195992507|gb|EDX56468.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus W]
gi|196023235|gb|EDX61913.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
03BB108]
gi|196030335|gb|EDX68934.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
NVH0597-99]
gi|218534801|gb|ACK87199.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
AH820]
gi|225785916|gb|ACO26133.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus cereus
03BB102]
gi|227005442|gb|ACP15185.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. CDC 684]
gi|228842903|gb|EEM87986.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|229266682|gb|ACQ48319.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Bacillus anthracis
str. A0248]
gi|300377741|gb|ADK06645.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
anthracis str. CI]
Length = 396
Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQDKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMAKELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|163941818|ref|YP_001646702.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
gi|163864015|gb|ABY45074.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
Length = 396
Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 92/360 (25%), Positives = 155/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K L + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMAKELMKYPLIRKYTGKYEDYLRENTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-- 278
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 279 --DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ S+ V K+ N + +E ++ +K L + K+
Sbjct: 301 TVQVGKGKEEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKR 360
>gi|302879284|ref|YP_003847848.1| Beta-lactamase [Gallionella capsiferriformans ES-2]
gi|302582073|gb|ADL56084.1| Beta-lactamase [Gallionella capsiferriformans ES-2]
Length = 381
Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 91/345 (26%), Positives = 155/345 (44%), Gaps = 9/345 (2%)
Query: 1 MRQFLVIIAMAMLSNIFP-FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M+ FL + + + Y L D ++ ++ PASLTKL
Sbjct: 1 MKSFLFFAGLLLSFTSYALQQPEPPVLASKSYLLYDFSSNQILVNQNGHARLEPASLTKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSAN 117
MTAY+ FS +K+ K L +T+ +A S K G ++T+D L LIV+S N
Sbjct: 61 MTAYLTFSAIKQDKLKLDQTLTVPVDAPRNSSGESRMLLKPGQSVTVDELLHGLIVQSGN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D A +A + +E FV+ MN ++ +G+ THF+N G+ HY++A DMAIL+ +
Sbjct: 121 DAANTLAVQISGSEATFVEQMNKEAQRMGMKNTHFVNPVGMPNAQHYSSAYDMAILAAAL 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D+P++ F ++ N N + ADG+KTG T +GF +V SA + +
Sbjct: 181 IRDYPEHYPLFGLRDYTFNNVTQANRNRLLWLDPYADGLKTGHTETAGFCLVGSAKRDKR 240
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNIS 293
LI+V+LGA N R S LL+ GF + + ++ S+
Sbjct: 241 RLISVVLGADSDNQRASESQKLLNYGFQSFDAVRLYQNSQPVTKVRVWKGTESHLDLGFR 300
Query: 294 EEV--CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+++ + ++ + + +++ +LK + K
Sbjct: 301 QDIFLTIPKGSFAQLKATLETHQPILAPITSGQQMGVLKLSLNGK 345
>gi|119713334|gb|ABL97398.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine bacterium
EB80_02D08]
Length = 385
Score = 217 bits (551), Expect = 2e-54, Method: Composition-based stats.
Identities = 95/336 (28%), Positives = 161/336 (47%), Gaps = 7/336 (2%)
Query: 1 MRQFLVII-AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ L I+ +++ + F+ A + Y L++ NT +IAE + PAS+TK+
Sbjct: 1 MKKILFILLSISTIGESQSFVPDAPELDVKSYILIEPNTNTIIAEYNSESEIEPASMTKI 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT+YVV + L + IS+ A S + + G +T+ + LK ++++S ND
Sbjct: 61 MTSYVVADQISNGLISLDDEVLISEKAWRMKGSKTFIEAGKKVTVSDLLKGIMIQSGNDA 120
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+VAIAE TE+ FV MN+ + +LG++ T F NA G+ H+++A+D+A L+
Sbjct: 121 SVAIAEYAGGTERGFVDLMNSYASSLGMNNTIFQNATGLPDENHFSSAKDLANLTSNYIN 180
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
FP+ ++ K K N N + DG+KTG T A+G+ +V SA +G L
Sbjct: 181 KFPEEYALYKQKEFTFNNIKQLNRNKLLWRDDSTDGVKTGHTEAAGYCLVGSAKRGGMRL 240
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEE 295
I V+ G+ N R S LL GF T +K + Y + + + E+
Sbjct: 241 ITVVAGSKSDNDRFLSSQRLLEYGFRFYTTQKMLIAEKEYQTITIWGGEEKSLGVGVLED 300
Query: 296 VCTTQKEI--INYNTQMKEAKDKESHFIDFEKITLL 329
+ T + T K + ++ +K+ L
Sbjct: 301 ISITLPRTSFKDVKTIYKVNNNIQAPIKIGQKVGTL 336
>gi|262041066|ref|ZP_06014285.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259041624|gb|EEW42676.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 400
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 159/338 (47%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ +A L A + + L+D +G V++E D +PASLTK+MT+YVV
Sbjct: 17 LLFLVAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+K K LT +T+ ++A S K G +++++ K +I++S ND
Sbjct: 77 GQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
++AIA+ + ++ FV MN +K +GL+ T FM HG+ G ++TARDMA+L+ +
Sbjct: 137 SIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALLTKAMIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L ADG+KTG T +G+N+V+SA QGD
Sbjct: 197 DVPEEYAVHKEKEFTFNKIRQPNRNRLLWSSNLNADGVKTGTTAGAGYNLVSSATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LIAV+LG R S LL+ GF I + + + + + E
Sbjct: 257 LIAVVLGTKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDSNEAKLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + ++ EK ++
Sbjct: 317 VGSITLPKGQLKNLKASYTLNQPQLTAPLEKGQVVGTI 354
>gi|47568129|ref|ZP_00238833.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
gi|47555119|gb|EAL13466.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
Length = 396
Score = 217 bits (551), Expect = 3e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQEKTEETTPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMAKELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|83593039|ref|YP_426791.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum
ATCC 11170]
gi|83575953|gb|ABC22504.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum
ATCC 11170]
Length = 388
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 86/334 (25%), Positives = 145/334 (43%), Gaps = 8/334 (2%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + + A K + ++D +T V+ + D P P+S++KLMTAY++F
Sbjct: 11 FVLAAGLLTAMPAQAFETKARHALVIDLDTDTVLLDKDADVPMPPSSMSKLMTAYMLFER 70
Query: 69 LKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
LK L ++S+NA S G+ + + + ++ +I++S ND V +
Sbjct: 71 LKSGSLSLDDTFSVSENAWRKGGAASGGSTMFLNPGAQVKVHDLMRGIIIQSGNDACVVV 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE+L E F MN +K LGL+ +HF+NA G+ HY TA D+ +L+ I DFP+
Sbjct: 131 AENLAGDEATFAAAMNRRAKELGLTNSHFVNATGLPDPEHYMTAHDLVLLAEHIIRDFPE 190
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + G N N + +GADG+KTG T +GF + ASA+Q + L+ VI
Sbjct: 191 FYEIYGETKFTYNGIVQHNRNPLLYMNMGADGLKTGHTNIAGFGLTASAVQDGRRLLMVI 250
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEEVCTTQ 300
G R++ + L+S GF N + VP +S
Sbjct: 251 NGLQSNKERSEEAERLMSWGFRNFETVTLLKAGQPISDADVWMGEEETVPLVSVNDLKIT 310
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ +A + + + +
Sbjct: 311 LPRAARRDMVAKAVFETPIPAPIQAGDRIATLVL 344
>gi|146329552|ref|YP_001209791.1| D-alanyl-D-alanine carboxypeptidase [Dichelobacter nodosus
VCS1703A]
gi|146233022|gb|ABQ14000.1| D-alanyl-D-alanine carboxypeptidase [Dichelobacter nodosus
VCS1703A]
Length = 375
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 102/335 (30%), Positives = 161/335 (48%), Gaps = 4/335 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ + + +L + Y L+D +G ++AE D PAS+TKLMTA
Sbjct: 5 KKCCFVTVFLLFFGVRAEVPPPDLPVKSYLLMDAQSGQILAERAADERLPPASITKLMTA 64
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
YV F+ LK K LT +TIS NA S + S +++++ L+ +IV+S ND +VA
Sbjct: 65 YVTFNALKTGKIHLTDLVTISANARAQNGSRMFVEVNSQVSVNDLLQGMIVQSGNDASVA 124
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + T FV MN T+K L L TH+ N G+ H++TA D+A L+ + DFP
Sbjct: 125 LAEYIGGTVAGFVHMMNATAKQLDLQKTHYQNPTGMPDEQHFSTAHDIARLAQALIRDFP 184
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
++ H++Q K K PN N + DG+KTG+T A+G+ + AS +GD LI V
Sbjct: 185 EFYHFYQQKEFTWNNIKQPNRNRLLWRNQNVDGLKTGYTDAAGYCLAASEKRGDWRLIGV 244
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTT 299
+LGA R + +LL+ GF N T + +++ + L EVP ++E
Sbjct: 245 VLGAEKEAQRYDAAENLLNFGFANYTQVTALRAEQVLLRGKVYKGLEAEVPIVAERTVHL 304
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + ++ K +
Sbjct: 305 LL-PVTAQNAISAHVALDTLIAPITKGQKVGTITV 338
>gi|296537403|ref|ZP_06899250.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
ATCC 49957]
gi|296262269|gb|EFH09047.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
ATCC 49957]
Length = 375
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 83/325 (25%), Positives = 151/325 (46%), Gaps = 6/325 (1%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ ++ L+D +TG V+ E D P+S++KLMT YVVF LK
Sbjct: 12 AVPTSPASTPLGPLDTSARQALLMDADTGAVLLEKSADERMPPSSMSKLMTMYVVFDLLK 71
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ + L + +S+ A S + GS ++++N + +I++S ND + +AE + +
Sbjct: 72 QGRLRLDQTLPVSERAWRMGGSKMFVELGSAVSVENLARGVIIQSGNDACIVLAEGISGS 131
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
E++F + +N ++ LGL+ + F NA G H TARD+A L+ + DFPQY ++
Sbjct: 132 EQQFAELLNEYARKLGLNDSTFRNATGWPDPEHRMTARDLATLARHLINDFPQYFAFYSE 191
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + G N N +G GADG+KTG T +G+ + + +GD+ LI V+ G
Sbjct: 192 RSFQWNGINQENRNPLLGRVPGADGLKTGHTEDAGYGLTGTVKRGDRRLILVVNGLTSMR 251
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEE---VCTTQKEII 304
R + S L+ GF + + + VP + + + ++
Sbjct: 252 ARGEESERLMEWGFREFENVVLFRAADTVEAAPVYLGEQSTVPLVGGKDMVLTLPRQWRR 311
Query: 305 NYNTQMKEAKDKESHFIDFEKITLL 329
N +++ + +++ L
Sbjct: 312 NLTVKLRYNGPIPAPIAKGQEVGQL 336
>gi|168240742|ref|ZP_02665674.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|194447475|ref|YP_002044893.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194405779|gb|ACF65998.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|205340371|gb|EDZ27135.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
Length = 400
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 150/339 (44%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D ++G V+AE D +PASLTK+MT+YV
Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYSSGKVLAEGNADEKLDPASLTKIMTSYV 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDM 255
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + + +
Sbjct: 256 RLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKREVNLGAG 315
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 316 DAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 354
>gi|152969428|ref|YP_001334537.1| D-alanyl-D-alanine carboxypeptidase fraction C [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|330008401|ref|ZP_08306219.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
gi|150954277|gb|ABR76307.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|328535160|gb|EGF61663.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
Length = 400
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 159/338 (47%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ +A L A + + L+D +G V++E D +PASLTK+MT+YVV
Sbjct: 17 LLFLVAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+K K LT +T+ ++A S K G +++++ K +I++S ND
Sbjct: 77 GQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
++AIA+ + ++ FV MN +K +GL+ T FM HG+ G ++TARDMA+L+ +
Sbjct: 137 SIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALLTKAMIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L ADG+KTG T +G+N+V+SA QGD
Sbjct: 197 DVPEEYAVHKEKEFTFNKIRQPNRNRLLWSSNLNADGVKTGTTAGAGYNLVSSATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LIAV+LG R S LL+ GF I + + + + + E
Sbjct: 257 LIAVVLGTKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDSNEAKLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + ++ EK ++
Sbjct: 317 AGSITLPKGQLKNLKASYTLNQPQLTAPLEKGQVVGTI 354
>gi|229186322|ref|ZP_04313487.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus BGSC 6E1]
gi|228597116|gb|EEK54771.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus BGSC 6E1]
Length = 396
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 1 MKRVFGILVCFMLLLSGTSVSFAQSEKMKQDKTEETAPKLAEQASSAIVIEQDTGKVLFD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 61 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 121 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 180
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 181 STANDMAIMAKELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 241 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 300
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 301 TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 360
>gi|238913835|ref|ZP_04657672.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
Length = 400
Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDM 255
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + + +
Sbjct: 256 RLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKREVNLGAG 315
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 316 DAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 354
>gi|65321470|ref|ZP_00394429.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A2012]
gi|118479279|ref|YP_896430.1| D-alanyl-D-alanine carboxypeptidase DacF [Bacillus thuringiensis
str. Al Hakam]
gi|118418504|gb|ABK86923.1| D-Ala-D-Ala carboxypeptidase DacF, Serine peptidase, MEROPS family
S11 [Bacillus thuringiensis str. Al Hakam]
Length = 398
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 95/360 (26%), Positives = 158/360 (43%), Gaps = 24/360 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M++ I+ ML +S A++ K +++ +TG V+ +
Sbjct: 3 MKRVFGILVCFMLLLSGTSVSFAQSEKTKQDKTEETTPKLAEQASSAIVIEQDTGKVLFD 62
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P+ PAS+TK+MT ++ +++ K LT + S++A+ S + G MT+
Sbjct: 63 KNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHAASMGGSQIFLEPGEEMTV 122
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK + + S ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY
Sbjct: 123 NEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHY 182
Query: 165 TTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA DMAI+ + ++ K NTN V + G DG+KTGF
Sbjct: 183 STANDMAIMAKELMKYPLIRKYTGKYEDYLREDTDKKFWLVNTNKLVRFYPGVDGVKTGF 242
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + + + ASA + +I+V++GA RN LL F +K K
Sbjct: 243 TTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLLDYAFGQYMTKKLYTRGEKIK 302
Query: 281 YQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + S+ V K+ N + +E ++ +K L + KK
Sbjct: 303 TVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKKVKAPIKKGDALGTLVIKK 362
>gi|163795501|ref|ZP_02189467.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199]
gi|159179100|gb|EDP63633.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199]
Length = 385
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 86/336 (25%), Positives = 141/336 (41%), Gaps = 10/336 (2%)
Query: 2 RQFLVII-AMAMLSNIFPFL------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R++L + +A+L P + A L+D +TG V+ E PA
Sbjct: 3 RRYLSFVGFLAVLVTTVPLILGGARPVAALDTSAREAILMDYDTGQVLFEKNSTELMPPA 62
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK+MT ++ F LK+ + +T I IS+NA S + GS + L + L +IV+
Sbjct: 63 SMTKIMTVFLAFERLKDGRLKMTDEIPISENAWRKGGSKMFVEVGSRVVLSDLLMGIIVQ 122
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND +A+AE++ +E+ F + M ++ +GL + F N+ G H TA D+A+L+
Sbjct: 123 SGNDATIALAEAISGSEEAFGELMTTRAREIGLERSVFRNSTGWPDPEHRMTAHDLAVLA 182
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
FP Y F K N N + +G DG+KTG T +G+ + SA +
Sbjct: 183 AETIRRFPDYYSLFSETSFTYNKIKQGNRNPLLYKAMGVDGLKTGHTENAGYGLTVSAKR 242
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPN 291
GD+ LI V+ G R+ S L+ GF + + +VP
Sbjct: 243 GDRRLILVVNGLSSVRERSDESERLIEWGFREFENLTFAKKGVPVETAEVWLGDRPKVPL 302
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+S+ + +
Sbjct: 303 VSDRDIVVAVKRAARKEMTVTVEYSGPIPAPIVAGQ 338
>gi|90578587|ref|ZP_01234397.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
gi|90439420|gb|EAS64601.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
Length = 391
Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats.
Identities = 98/351 (27%), Positives = 155/351 (44%), Gaps = 17/351 (4%)
Query: 1 MRQFLVIIAM----------AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
M++ + ++ + A T Y L+D NTG V+ E +
Sbjct: 1 MKKTSPLFSLVGVTALCTVSFSSLAAPSVIPDAPTLSAKGYVLMDYNTGQVLVEKNANEK 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNA 107
NPASLTKLMT+YV +K+ + IS+NA S + GS + L +
Sbjct: 61 LNPASLTKLMTSYVAGQEIKQGNISKDDIVVISRNAWARNFPDSSKMFIEVGSEVPLMDL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+ LI++S ND +VA+AE + +E+ FV MN+ +K LG+++THF N HG+ YTT
Sbjct: 121 FRGLIIQSGNDASVALAEHVAGSEQAFVGLMNSWAKKLGMNSTHFANPHGLDHSDLYTTP 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGF 226
D+A+L + D P + K N N + DGMKTG+T +G+
Sbjct: 181 YDIALLGQALIRDLPSIYPLYSEKSFTYNNITQRNRNGLLYDKSMNVDGMKTGYTSGAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
++ +SA +GD LIAV++G TR S +LL+ GF K ++
Sbjct: 241 SLTSSATEGDMRLIAVVMGTKSTKTRESESKALLNYGFRFFETVVPHKAGDKILSERVWF 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKE---SHFIDFEKITLLKNKIT 334
N+ V ++ ++ N K E EK ++ +
Sbjct: 301 GNKENVELGVDSSSYVTLSRNDTKKLTASVELNGELDAPIEKGEVVGKVLY 351
>gi|288958656|ref|YP_003448997.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
gi|288910964|dbj|BAI72453.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
Length = 396
Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats.
Identities = 83/324 (25%), Positives = 140/324 (43%), Gaps = 3/324 (0%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
P + L+D + V+ E D P+S++K+MTAY+VF +K +
Sbjct: 33 FTAVPVQAATIDTIAKQAILVDLTSNTVLFEKNADERMAPSSMSKIMTAYMVFEAIKAGR 92
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
L + + +S+ A S + + + +D+ LK +IV+S ND + +AE L +E+
Sbjct: 93 LTLESTLPVSERAWRMQGSKMFVELHNNIKVDDLLKGMIVQSGNDACIVLAEGLAGSEQS 152
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F + +K LGL +++F+NA G HY TARD+AIL+ R+ DFP++ Y I+
Sbjct: 153 FAEQATKRAKELGLKSSNFVNATGWPDPNHYMTARDLAILAERLIKDFPEFYKYDSIREF 212
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ G N N + + DG+KTG T A G+ + AS + + L+ V+ G R
Sbjct: 213 KYHGITQGNRNPLLYRNMNVDGLKTGHTDAGGYGLTASGERDGRRLLLVVNGLPSMQARA 272
Query: 254 KVSASLLSMGFYNKTDRKKIN---YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
SA L+ GF I + Q + VP + + +
Sbjct: 273 DESARLIEWGFREFASYTLYKGGETIEQVPVWQGEQDMVPVTVPQNLSVTMARTDRPGMK 332
Query: 311 KEAKDKESHFIDFEKITLLKNKIT 334
+K + +
Sbjct: 333 VSLVSSAPVAAPLKKGDPVGKLVI 356
>gi|194735164|ref|YP_002113956.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195874051|ref|ZP_02700341.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197250312|ref|YP_002145817.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197300887|ref|ZP_02661864.2| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|198246085|ref|YP_002214828.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205357020|ref|ZP_02344188.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205358377|ref|ZP_02655826.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205359776|ref|ZP_02831975.2| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194710666|gb|ACF89887.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195630952|gb|EDX49538.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197214015|gb|ACH51412.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197290207|gb|EDY29564.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase) [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197940601|gb|ACH77934.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205324544|gb|EDZ12383.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205334736|gb|EDZ21500.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205343236|gb|EDZ30000.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
Length = 426
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 42 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 101
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 102 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 161
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 162 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 221
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 222 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDM 281
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + + +
Sbjct: 282 RLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKREVNLGAG 341
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 342 DAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 380
>gi|16759773|ref|NP_455390.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29142454|ref|NP_805796.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56414047|ref|YP_151122.1| D-alanyl-D-alanine carboxypeptidase subunit C [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62179427|ref|YP_215844.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161614874|ref|YP_001588839.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|168263619|ref|ZP_02685592.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|194445951|ref|YP_002040103.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194470485|ref|ZP_03076469.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|197262228|ref|ZP_03162302.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197362970|ref|YP_002142607.1| D-alanyl-D-alanine carboxypeptidase subunit C [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|200391099|ref|ZP_03217710.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205352115|ref|YP_002225916.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207856297|ref|YP_002242948.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|213583237|ref|ZP_03365063.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213612370|ref|ZP_03370196.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|224582675|ref|YP_002636473.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|289827182|ref|ZP_06545924.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|25297768|pir||AD0604 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
precursor) [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16502066|emb|CAD05302.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
precursor) [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29138084|gb|AAO69645.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56128304|gb|AAV77810.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
precursor) [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|62127060|gb|AAX64763.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161364238|gb|ABX68006.1| hypothetical protein SPAB_02628 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194404614|gb|ACF64836.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194456849|gb|EDX45688.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|197094447|emb|CAR59963.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
precursor) [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|197240483|gb|EDY23103.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|199603544|gb|EDZ02090.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|205271896|emb|CAR36737.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
precursor) [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|205347698|gb|EDZ34329.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206708100|emb|CAR32392.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
precursor) [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224467202|gb|ACN45032.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
precursor) [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|320085138|emb|CBY94925.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322713895|gb|EFZ05466.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|326622581|gb|EGE28926.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326627157|gb|EGE33500.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
Length = 400
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDM 255
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + + +
Sbjct: 256 RLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKREVNLGAG 315
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 316 DAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 354
>gi|204930006|ref|ZP_03221027.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|204321000|gb|EDZ06201.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
Length = 400
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDM 255
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + + +
Sbjct: 256 RLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKPEVNLGAG 315
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 316 DAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 354
>gi|89076565|ref|ZP_01162873.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp.
SKA34]
gi|89047757|gb|EAR53356.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp.
SKA34]
Length = 391
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 97/351 (27%), Positives = 154/351 (43%), Gaps = 17/351 (4%)
Query: 1 MRQFLVIIAM----------AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
M++ + ++ + A T Y L+D NTG V+ E +
Sbjct: 1 MKKTSPLFSLVGVTALCTVSFSSLAAPSVIPDAPTLSAKGYVLMDYNTGQVLVEKNANEK 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNA 107
NPASLTKLMT+YV +K+ + IS+NA S + GS + L +
Sbjct: 61 LNPASLTKLMTSYVAGQEIKQGNISKDDIVVISRNAWARNFPDSSKMFIEVGSEVPLMDL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+ LI++S ND +VA+AE + +E+ FV MN+ +K LG+++THF N HG+ YTT
Sbjct: 121 FRGLIIQSGNDASVALAEHVAGSEQAFVGLMNSWAKKLGMNSTHFANPHGLDHSDLYTTP 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGF 226
D+A+L + D P + K N N + DGMKTG+T +G+
Sbjct: 181 YDIALLGQALIRDLPSIYPLYSEKSFTYNNITQRNRNGLLYDKSMNVDGMKTGYTSGAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
++ +SA +GD LIAV++G TR S +LL+ GF K ++
Sbjct: 241 SLTSSATEGDMRLIAVVMGTKSTKTRESESKALLNYGFRFFETVVPHKAGDKILSERVWF 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKE---SHFIDFEKITLLKNKIT 334
N+ V ++ ++ N K E K ++ +
Sbjct: 301 GNKENVELGVDSSSYVTLSRNDTKKLTASVELNGELDAPITKGDVVGKVLY 351
>gi|312127393|ref|YP_003992267.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777412|gb|ADQ06898.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
hydrothermalis 108]
Length = 386
Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats.
Identities = 83/313 (26%), Positives = 139/313 (44%), Gaps = 6/313 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D +TG ++ E PAS+TK+MT ++ +++ + L+ + S+
Sbjct: 38 EISAKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDRVIASQ 97
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NAS S K+ MT++ LK + + SAND VA+AE + + ++FV MN +K
Sbjct: 98 NASSLGGSQIYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKE 157
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK-TDFPQYMHYFQIKGLEIKGKKYPNT 203
LG+ T+F+N +G+ HYT+A D+AI+S + + + + NT
Sbjct: 158 LGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNT 217
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
N V + G G+KTG T + F + ASA++ LIAVI+GA D TR + LL G
Sbjct: 218 NKLVRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWG 277
Query: 264 FYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
F N + + +S +V K+ + K ++
Sbjct: 278 FANFSMYSPYSKGYCFGKVKVKNGIEKEVEAILSTDVKLLVKKGDESTVESKVTLPQQ-I 336
Query: 320 FIDFEKITLLKNK 332
+ +
Sbjct: 337 SAPVKTGQKIGKL 349
>gi|222529548|ref|YP_002573430.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
bescii DSM 6725]
gi|222456395|gb|ACM60657.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
bescii DSM 6725]
Length = 386
Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats.
Identities = 87/350 (24%), Positives = 148/350 (42%), Gaps = 19/350 (5%)
Query: 1 MRQFLVIIAMAMLSN-------------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYP 47
MR+ + I + L + + L+D +TG ++ E
Sbjct: 1 MRKAITISILIFLLFGNSHIGCKKVFGESLQTQTPSLEISAKSAILVDFDTGKILYEKNS 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
PAS+TK+MT ++ +++ K L+ + S+NAS S K+ MT++
Sbjct: 61 HEKLPPASITKIMTMILICEAIEKGKIKLSDKVVASQNASSLGGSQVYLKENEEMTVEEL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
LK + + SAND VA+AE + + ++FV MN +K LG+ T+F+N +G+ HYT+A
Sbjct: 121 LKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGMFDTNFVNPYGLDAENHYTSA 180
Query: 168 RDMAILSWRIK-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
D+AI+S + + + + NTN V + G G+KTG T + F
Sbjct: 181 YDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNTNKLVRFYRGCTGVKTGSTDKAKF 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQ 282
+ ASA++ LIAVI+GA D TR + +L GF N + +
Sbjct: 241 CVSASALRNGLHLIAVIMGAPDSKTRFNDATKVLDWGFANFSMYSPYSKGYCFGKVKVKN 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+S +V K+ + K ++ + +
Sbjct: 301 GIEKEVEAILSTDVKLIVKKGDESTVESKVTLPQQ-ISAPVKTGQKIGKL 349
>gi|56460065|ref|YP_155346.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina loihiensis L2TR]
gi|56179075|gb|AAV81797.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina loihiensis L2TR]
Length = 385
Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 150/349 (42%), Gaps = 15/349 (4%)
Query: 1 MRQF------LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ + ++ + + A + Y L+D TG V+AEN PA
Sbjct: 1 MKKICHLFTAVTLLFSSASFAAQSLVPDAPSVNAKAYILIDHTTGKVLAENNSRESLPPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLL 111
SLTK+MT+Y++ + + +T+S+NA S + G +++ + +
Sbjct: 61 SLTKMMTSYIIGKEMLAGRISEKDIVTVSENAWAKNFPESSKMFIEVGKEVSVKELNRGI 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
I+ S ND VA+AE + +E F MNN ++ +G+ +HF N+HG+ Y +ARDMA
Sbjct: 121 IISSGNDACVAMAEHIAGSEDAFAGLMNNYAEQIGMKDSHFANSHGLPDSEQYVSARDMA 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVA 230
L+ + + P + K K N N L DG+KTG T +G+++V+
Sbjct: 181 TLASALINETPDEYKLYSEKSFTYNNIKQYNRNSLLWDRSLNVDGIKTGHTNEAGYSLVS 240
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLS 286
SA++ LIAV++G R S LL+ GF K + + + +L
Sbjct: 241 SAVEDGTRLIAVVMGTNSEQARKVESKKLLNYGFRYFETVKAYSAGESFISQRIWGGDLD 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
ISE+V T + + D E K + +
Sbjct: 301 EVELGISEDVVITLPKGQRDKLKANFELD-EQLQAPLSKGQHVGTVYLQ 348
>gi|295694696|ref|YP_003587934.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
2912]
gi|295410298|gb|ADG04790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
2912]
Length = 405
Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats.
Identities = 94/325 (28%), Positives = 148/325 (45%), Gaps = 7/325 (2%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P L+D TG ++ E D PAS+TK+MT Y+ F + + KA
Sbjct: 33 AAGVAWPAPPHLTAPSAVLMDAATGQILYEKGADDKRYPASMTKMMTLYLTFEAIHDGKA 92
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L + IS+NA S TL + + + V SAND AVAIAE + + +F
Sbjct: 93 HLDDIVPISQNAYNTGGSEVYLDPREKFTLKDMITFVAVHSANDAAVAIAEYVGGSVGQF 152
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V+ MN ++ LGL+ THF+N G+ HYTTA DMAIL+ + T +P+ + Y +I +
Sbjct: 153 VKRMNEKAQELGLTQTHFVNPDGLHDPNHYTTAMDMAILARDLITKYPEVLDYTKIHDMW 212
Query: 195 IKGKKYPN--TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
I+ + TN +G + G DG+KTGFT +G+ + A+A QG LI+VI+ D +R
Sbjct: 213 IRNHTFNVSATNNLLGKYPGMDGLKTGFTDQAGYCLTATAQQGGVRLISVIMKDPDDQSR 272
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIK-----DFYQQNLSNEVPNISEEVCTTQKEIINYN 307
K + +LL GF N T + + + + + E +
Sbjct: 273 QKDTTALLDYGFKNFTPLSLLKPGDPLDVKAEVPDGVIESLPVTTQVPLAPLVPEGTKAD 332
Query: 308 TQMKEAKDKESHFIDFEKITLLKNK 332
++ + + +
Sbjct: 333 DLVRTVQWTPGLKAPVAQGQQVGTV 357
>gi|325982907|ref|YP_004295309.1| beta-lactamase [Nitrosomonas sp. AL212]
gi|325532426|gb|ADZ27147.1| Beta-lactamase [Nitrosomonas sp. AL212]
Length = 373
Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats.
Identities = 97/342 (28%), Positives = 156/342 (45%), Gaps = 6/342 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M+ V++ + + + L D TG V+A PASLTKLM
Sbjct: 1 MKLLFVLLLTCLTVSSASAQQQEIPVAAKAFMLSDYQTGQVLAGQNVHERIEPASLTKLM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYVVFS LK+ + L +S++A S + +T+D ++ +IV+S ND
Sbjct: 61 TAYVVFSALKQGQLALNQTAVVSESAWRMIGSRMFIEPNKQVTVDELIRGMIVQSGNDAC 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+AE++ +E FV MN +K LG+ THF N G+ GHYTTA D+ +L+ I D
Sbjct: 121 IALAETVAGSEANFVIIMNKEAKRLGMQNTHFTNTTGLPDPGHYTTAHDLTLLATAIIRD 180
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP + + +K PN N + DGMKTG+T A+G+ ++ SAI+ + LI
Sbjct: 181 FPDFYPLYSLKEYTYNNITQPNRNRLLWIDPHVDGMKTGWTKAAGYCLITSAIRDKRRLI 240
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEV 296
+VI+GA N R+ S LL+ GF ++ + +V
Sbjct: 241 SVIIGAKSANARSIESQRLLNYGFQFYDTLHLYKKNDSLATIHLWKGTQNELKAGFDRDV 300
Query: 297 --CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + M+ + + +++ +K + K
Sbjct: 301 FFTLPKGQADKLKATMEYKQPLIAPIQLGQEVGTVKFTLDDK 342
>gi|312877868|ref|ZP_07737815.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
lactoaceticus 6A]
gi|311795372|gb|EFR11754.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 386
Score = 215 bits (548), Expect = 5e-54, Method: Composition-based stats.
Identities = 85/350 (24%), Positives = 151/350 (43%), Gaps = 19/350 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-------------IAETNKLPYYTLLDTNTGHVIAENYP 47
MR+ + + + ++ ++ + L+D +TG ++ E
Sbjct: 1 MRKAITFLIVFLMLFGNSHIACKKVFGESLQTQTPSLEISAKSAILVDFDTGRILYEKNS 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+PAS+TK+MT ++ +++ + L+ + S+NAS S K+ MT++
Sbjct: 61 HEKLSPASITKIMTMILICEAIEKGRIKLSDRVVASQNASSLGGSQVYLKENEEMTVEEL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
LK + + SAND VA+AE + + ++FV MN +K LG+ T+F+N +G+ HYT+A
Sbjct: 121 LKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKELGMLDTNFVNPYGLDAENHYTSA 180
Query: 168 RDMAILSWRIK-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
D+AI+S + + + + NTN V + G G+KTG T + F
Sbjct: 181 YDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNTNKLVRFYRGCTGVKTGSTDKAKF 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQ 282
+ ASA++ LIAVI+GA D TR + LL GF N + +
Sbjct: 241 CVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWGFANFSMYSPYSKGYCFGKVKIKN 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +V K+ + K A ++ + +
Sbjct: 301 GIEKEVEAILCTDVKLLVKKGDESAVESKVALPQQ-ISAPVKAGQKIGKL 349
>gi|119504244|ref|ZP_01626324.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium
HTCC2080]
gi|119459752|gb|EAW40847.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium
HTCC2080]
Length = 386
Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats.
Identities = 86/331 (25%), Positives = 142/331 (42%), Gaps = 11/331 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ + + Y L+D TG V+ E+ D PASLTKLMT+Y++ +
Sbjct: 15 SASATAVTLVPAPPGINADAYLLMDFATGEVLVEHNIDTRLPPASLTKLMTSYILAEEVD 74
Query: 71 EKKAMLTTPITISKNASEYPPSN-----STFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+ L +T+S+NA P + G ++T+ + + + S ND VAIAE
Sbjct: 75 AGRLSLDDEVTVSRNAWSQNPKFRGSSLMWIEPGKSVTVGELEQGIAISSGNDATVAIAE 134
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+ +E+ FV MN ++ L L+ATHF N HG+ H TTARD+ L+ D P
Sbjct: 135 HIAGSEEAFVALMNRYAEELALTATHFENTHGLPNSDHLTTARDLGSLAIATIRDHPDRY 194
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
++ + N N + DG+KTG+T +G+ +VASA + LI+V+LG
Sbjct: 195 RVYRQQSYTYNDITQYNRNHLLREDPSVDGLKTGYTSVAGYGLVASAEREGMRLISVVLG 254
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQK 301
+ +R + SLL+ GF + + + + ++ N + E V
Sbjct: 255 SNSTRSRKAETRSLLNYGFRFYQNLEVVTGATSLGRTRVWKGNAEAIDGGLLESVTVIVP 314
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ D K ++
Sbjct: 315 RTQAAAEVIATFDD--PLQAPINKGDVVGQL 343
>gi|16764225|ref|NP_459840.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|167992114|ref|ZP_02573212.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|16419371|gb|AAL19799.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
[Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|205329616|gb|EDZ16380.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261246119|emb|CBG23922.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
precursor) [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267992623|gb|ACY87508.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301157447|emb|CBW16936.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6
precursor) [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312911888|dbj|BAJ35862.1| D-alanyl-D-alanine carboxypeptidase DacC [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321226445|gb|EFX51496.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323129170|gb|ADX16600.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|332987795|gb|AEF06778.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 400
Score = 215 bits (547), Expect = 6e-54, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDM 255
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + + +
Sbjct: 256 RLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKHEVNLGAG 315
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 316 DAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 354
>gi|206576649|ref|YP_002239512.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
342]
gi|290510585|ref|ZP_06549955.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
gi|206565707|gb|ACI07483.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
342]
gi|289777301|gb|EFD85299.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
Length = 400
Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats.
Identities = 99/338 (29%), Positives = 159/338 (47%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ +A L A + + L+D +G V++E D +PASLTK+MT+YVV
Sbjct: 17 LLFLVAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+K K LT +T+ ++A S K G +++++ K +I++S ND
Sbjct: 77 GQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
++AIA+ + ++ FV MN +K +GL+ T FM HG+ G ++TARDMA+L+ +
Sbjct: 137 SIAIADYVAGSQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALLTKAMIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N T L ADG+KTG T +G+N+V+SA QGD
Sbjct: 197 DVPEEYAVHKEKEFTFNKIRQPNRNRLLWSTNLNADGVKTGTTAGAGYNLVSSATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LIAV+LG R S LL+ GF I + + + + S E
Sbjct: 257 LIAVVLGTKTDRIRFNESEKLLTWGFRFYETVTPIKPDATFVTQRVWFGDSSEAKLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + ++ EK ++
Sbjct: 317 AGSITLPKGQLKNLKASYTLNQPQLTAPLEKGQVVGTI 354
>gi|332799334|ref|YP_004460833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp.
Re1]
gi|332697069|gb|AEE91526.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp.
Re1]
Length = 388
Score = 215 bits (547), Expect = 7e-54, Method: Composition-based stats.
Identities = 94/349 (26%), Positives = 162/349 (46%), Gaps = 15/349 (4%)
Query: 2 RQF--LVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
++ +++I + ML I ++ A K P L+D TG ++ E PAS+T
Sbjct: 6 KKISCILLITLLMLFIIISPVAAAPQLDIKSPSAILMDAGTGTILFEKNSHEKMEPASIT 65
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT + F L+ K L+ + IS+ A S G TL+ LK +++ SAN
Sbjct: 66 KIMTMIIAFEALESGKVSLSDIVRISERAWGTGGSQVFLAPGEEQTLETLLKCIVIASAN 125
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D ++A+AE + + + FV+ MN+ +K LG+S T+F+N HG+ HYTTA D+A++S +
Sbjct: 126 DASMAVAEHIGGSVEGFVKLMNDKAKQLGMSNTNFVNPHGLSSPEHYTTAHDIALMSREL 185
Query: 178 KTDF------PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
++ Y + + NTN +G + G DG+KTGF +G +
Sbjct: 186 VKYPLFFNWSTIWIDYLEHTDKKRDATMLANTNKLLGKYEGLDGLKTGFHNKAGHCFAGT 245
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSN 287
A +GD LI+V+L A + R + + LL GF + K + I + +L N
Sbjct: 246 ARRGDFRLISVVLNADTSSQRFEDTVKLLDYGFGHFDSIKVVEKGSIQKILPVEKGHLEN 305
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ E+V ++ K + +K + + ++
Sbjct: 306 VNVIVPEDVSLLIEKGKEGEINTKV-DVPDKLCAPLKKDHAVGTLLIEQ 353
>gi|254478674|ref|ZP_05092045.1| D-alanyl-D-alanine carboxypeptidase family [Carboxydibrachium
pacificum DSM 12653]
gi|214035361|gb|EEB76064.1| D-alanyl-D-alanine carboxypeptidase family [Carboxydibrachium
pacificum DSM 12653]
Length = 377
Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats.
Identities = 94/336 (27%), Positives = 148/336 (44%), Gaps = 4/336 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + + ++ + K L++ TG ++ E P PAS+TK+M
Sbjct: 1 MSKKFLALLISTFLLFNTAYADVMNLKAKSAILMEAETGEILYEKDIHKPLPPASVTKVM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T + + K +T + SK+A + + + G MT+D+ +K + + SAND +
Sbjct: 61 TLLLAIEAIDSGKIKVTDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSANDAS 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + TE+ FV+ MN +K LG T F NA G+ + GH TT D+A++S +
Sbjct: 121 VALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTTVYDIAMISRELVKH 180
Query: 181 FPQY-MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ +I L NTN + + G DG+KTG T + + + A+A +GD L
Sbjct: 181 PSIFKYLTNKIDSLRNGKFSLINTNKLLWRYQGVDGIKTGSTSEALYCMAATAKRGDTRL 240
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEV 296
IAV+ GA D TR +A LL GF N K + K + V IS +
Sbjct: 241 IAVVFGAPDSETRFNETAKLLDYGFANFETVKVASKGEVLGKIKVLKGNKEMVEGISLKD 300
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ KE + K K L
Sbjct: 301 EYVVVKKGEGKNIKKEVELKNFLTAPVSKNNPLGVL 336
>gi|312110348|ref|YP_003988664.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y4.1MC1]
gi|311215449|gb|ADP74053.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y4.1MC1]
Length = 393
Score = 215 bits (546), Expect = 8e-54, Method: Composition-based stats.
Identities = 88/357 (24%), Positives = 152/357 (42%), Gaps = 21/357 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-------------IAETNKLPYYTLLDTNTGHVIAENYP 47
M++ L+ + + +F S I ++ L++ +TG V+ E
Sbjct: 1 MKKLLIRLLLFASIFLFTISSYVHAEEKKSTARGIELASEARSAILIERDTGAVLYEKNA 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ PAS+TK+MT ++ + + + + S+ A+ S + G MT+D
Sbjct: 61 NEKLPPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGSQIFLEPGEEMTVDEL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
L+ + + S ND +VA+AE + +E+ FV+ MN +K LGL T F NA G+ GHY++A
Sbjct: 121 LRGIAIGSGNDASVALAERIAGSEEAFVEMMNKKAKELGLKNTSFQNATGLPAKGHYSSA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQI----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
DMAI++ + + + + K NTN V + G DG+KTGFT
Sbjct: 181 HDMAIMARELLKYEDITKYTSKYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTSE 240
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----D 279
+ + + A+A + +IAV+ GA RN +L F + +
Sbjct: 241 AKYCLTATAKKNGMRVIAVVFGAPTPKERNAQITRMLDYAFSQYKTHPVLKRNEVVAHAN 300
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ SE + K+ + N K K ++ +K L I K+
Sbjct: 301 VSKGKKKTVALVTSEPISVLTKKGQSVNKMEKVIKVNKNAKAPIKKGDELGVLILKQ 357
>gi|157146509|ref|YP_001453828.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter koseri
ATCC BAA-895]
gi|157083714|gb|ABV13392.1| hypothetical protein CKO_02270 [Citrobacter koseri ATCC BAA-895]
Length = 413
Score = 215 bits (546), Expect = 9e-54, Method: Composition-based stats.
Identities = 95/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ A + + + L+D ++G V+AE D +PASLTK+MT+YVV
Sbjct: 30 LLFLFAPTLQAAEQTTAPPSVDARAWILMDYSSGKVLAEGNADEKLDPASLTKIMTSYVV 89
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 90 GQALKAGKIQLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVSDLNKGVIIQSGNDA 149
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 150 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 209
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 210 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 269
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LG R S LL+ GF I + + + + S E
Sbjct: 270 LISVVLGTKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 329
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 330 AGSVTIPRGQLKNLKASFTLTEPQLTAPLKKGQVVGTI 367
>gi|329905874|ref|ZP_08274257.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium
IMCC9480]
gi|327547445|gb|EGF32266.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium
IMCC9480]
Length = 403
Score = 215 bits (546), Expect = 9e-54, Method: Composition-based stats.
Identities = 103/355 (29%), Positives = 171/355 (48%), Gaps = 19/355 (5%)
Query: 1 MRQFLVIIAMAMLSN-------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+ F+ +A ++S A + LLDT +G V+A P P
Sbjct: 18 MKIFIAALAATVISLSSVFVQPASAQTMPAPIVAAKSWLLLDTTSGQVLASQDPTMRIEP 77
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLL 111
ASLTK+MTAYV F +KEK+ L + +S A + P S + +++D+ L L
Sbjct: 78 ASLTKIMTAYVTFQAIKEKRLDLAQMVNVSVRAWKVDPSSSKMFIDPATPVSVDDLLHGL 137
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+V+S ND AVA+AE++ TE+ FV MN +K +GL+ T F N HG+ +Y+TA+D++
Sbjct: 138 MVQSGNDAAVALAEAVAGTEEAFVVLMNREAKRMGLTNTQFGNPHGLPSQSNYSTAQDLS 197
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
L+ + TD+P++ +K PN N + DGMKTG T A+G+ I+AS
Sbjct: 198 KLAAAVITDYPEFYKIDSVKSFTYNKITQPNRNRLLWLDPSVDGMKTGHTEAAGYCIIAS 257
Query: 232 AIQ----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQ 283
A + G++ LI+V+LGA +R + S LL+ GF N K ++
Sbjct: 258 AKRPNGSGERRLISVVLGANSDQSRTQESQKLLNWGFQNFDTVKLYGKGQPVETPPVWKG 317
Query: 284 NLSNEVPNISEEVCTTQKEII--NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++++ T + + ++ + K+ ++K + K
Sbjct: 318 SEKTIKIGFTQDIYVTVAKGVAAKMKPVLERKDPLVAPIAANSKVGMMKMMVDGK 372
>gi|237730821|ref|ZP_04561302.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter sp.
30_2]
gi|226906360|gb|EEH92278.1| D-alanyl-D-alanine carboxypeptidase fraction C [Citrobacter sp.
30_2]
Length = 407
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++I +A + + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 24 LLILLAPTVQAAEQPTAPPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 83
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K L +T+ K+A K G + + + K +I++S ND
Sbjct: 84 GQALKAGKINLNDMVTVGKDAWATGNPALRGSSVMFLKPGDQVAVSDLNKGVIIQSGNDA 143
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 144 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAAGQFSTARDMALLGKALIH 203
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 204 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSTNLNVDGMKTGTTAGAGYNLVASATQGDMR 263
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 264 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 323
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 324 GGSVTIPRGQLKNLKASFTLTEPQLTAPLKKGQVVGTI 361
>gi|288936359|ref|YP_003440418.1| beta-lactamase [Klebsiella variicola At-22]
gi|288891068|gb|ADC59386.1| Beta-lactamase [Klebsiella variicola At-22]
Length = 403
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 99/338 (29%), Positives = 158/338 (46%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ +A L A + + L+D +G V++E D +PASLTK+MT+YVV
Sbjct: 20 LLFLIAPAVQAAEQLPDAPSIDARAWILMDYASGKVLSEGNADEKLDPASLTKIMTSYVV 79
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+K K LT +T+ ++A S K G +++++ K +I++S ND
Sbjct: 80 GQAIKAGKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGMQVSVEDLNKGVIIQSGNDA 139
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
++AIA+ + + FV MN +K +GL+ T FM HG+ G ++TARDMA+L+ +
Sbjct: 140 SIAIADYVAGNQDAFVSLMNGYAKKMGLTNTTFMTVHGLDAPGQFSTARDMALLTKAMIH 199
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N T L ADG+KTG T +G+N+V+SA QGD
Sbjct: 200 DVPEEYAVHKEKEFTFNKIRQPNRNRLLWSTNLNADGVKTGTTAGAGYNLVSSATQGDMR 259
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LIAV+LG R S LL+ GF I + + + + S E
Sbjct: 260 LIAVVLGTKTDRIRFNESEKLLTWGFRFYETVTPIKPDATFVTQRVWFGDSSEAKLGAGE 319
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + ++ EK ++
Sbjct: 320 AGSITLPKGQLKNLKASYTLNQPQLTAPLEKGQVVGTI 357
>gi|146296751|ref|YP_001180522.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410327|gb|ABP67331.1| D-Ala-D-Ala carboxypeptidase DacF, Serine peptidase, MEROPS family
S11 [Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 384
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 89/346 (25%), Positives = 149/346 (43%), Gaps = 17/346 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ L ++ ++ + F+ + + L+D +TG V+ E
Sbjct: 1 MKRILTLLILSFFLSSLNFIRAFCQTQNNELTNSPELSAMSAILVDFDTGRVLFEKNSHE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
PAS+TK+MT ++ +++ K L+ + S+NA+ S K+ MT++ LK
Sbjct: 61 KLPPASITKIMTMILICEAIEKGKLKLSDKVIASQNAASLGGSQVYLKENEEMTVEELLK 120
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+ + SAND VA+AE L + + FV MN +K LG+ T+F+N +G+ GHYT+A D
Sbjct: 121 SIAIASANDACVALAEHLAGSVQGFVYMMNQKAKELGMLDTNFVNPYGLDAEGHYTSAYD 180
Query: 170 MAILSWRIK-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+A++S + + + + NTN V + G G+KTG T + F I
Sbjct: 181 VAVMSRELLKHKLVRNYLTTWVDTVRDGKFGLTNTNKLVRFYRGCTGVKTGSTDKAKFCI 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQN 284
ASA + LIAVI+ A D TR + LL GF N
Sbjct: 241 SASAQRNALHLIAVIMAAPDSKTRFNEAVRLLDWGFANFAMYAPYAKDFSFGKVRVRNGL 300
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +V K+ + + K KE + ++
Sbjct: 301 KKEVSAVLERDVKLLVKKGDENSIETKTILPKE-IPAPVKLGQVVG 345
>gi|192360123|ref|YP_001981301.1| D-alanyl-D-alanine carboxypeptidase family [Cellvibrio japonicus
Ueda107]
gi|190686288|gb|ACE83966.1| D-alanyl-D-alanine carboxypeptidase family [Cellvibrio japonicus
Ueda107]
Length = 405
Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats.
Identities = 89/321 (27%), Positives = 142/321 (44%), Gaps = 5/321 (1%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ A Y L+D TG +IAE + PASLTK+M++Y++ L++ + T
Sbjct: 47 AIPQAPQLAATGYILVDATTGSIIAEFNAEQKLPPASLTKMMSSYLIVDELEKGRYQEQT 106
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ IS A + S K+G+ + L + L+ +I++S ND VA+AE E FV M
Sbjct: 107 LVPISVKAWQMGGSRMFVKEGTQVPLIDLLRGVIIQSGNDATVALAEYHSGNEDAFVDRM 166
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + LG+ THF N+ G GH TTA+D+AIL+ I D P Y K
Sbjct: 167 NQKAAELGMVNTHFENSSGWPAEGHLTTAKDLAILARAIINDHPIYYPLHAEKYFVYNDI 226
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ N N + DG+KTG T +G+ +VAS+ + + LIAV++G + R +
Sbjct: 227 RQRNRNELLFRDETVDGLKTGHTEEAGYCLVASSKRENTRLIAVVMGTANEKARAAETQK 286
Query: 259 LLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
LL+ GF + + ++ + T + Q K
Sbjct: 287 LLAYGFRYFQTTTLYQAGQELSKQRVWAGKTDEVTLGLANAITLTLPKGREQGLQAKMHV 346
Query: 315 DKESHFIDFEKITLLKNKITK 335
+ E+ + L N +
Sbjct: 347 N-ETIKAPLQVGQELGNLTIE 366
>gi|20807763|ref|NP_622934.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
tengcongensis MB4]
gi|20516318|gb|AAM24538.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
tengcongensis MB4]
Length = 377
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 94/336 (27%), Positives = 148/336 (44%), Gaps = 4/336 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + + ++ + K L++ TG ++ E P PAS+TK+M
Sbjct: 1 MSKKFLALLISTFLLFNTAYADVMNLKAKSAILMEAETGEILYEKDIHKPLPPASVTKVM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T + + K +T + SK+A + + + G MT+D+ +K + + SAND +
Sbjct: 61 TLLLAIEAIDSGKIKVTDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSANDAS 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + TE+ FV+ MN +K LG T F NA G+ + GH TT D+A++S +
Sbjct: 121 VALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTTVYDIAMISRELVKH 180
Query: 181 FPQY-MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ +I L NTN + + G DG+KTG T + + + A+A +GD L
Sbjct: 181 PSIFKYLTNKIDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRGDTRL 240
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEV 296
IAV+ GA D TR +A LL GF N K + K + V IS +
Sbjct: 241 IAVVFGAPDSETRFNETAKLLDYGFANFETVKVASKGEVLGKIKVLKGNKEMVEGISLKD 300
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ KE + K K L
Sbjct: 301 EYVVVKKGEGKNIKKEVELKNFLTAPVSKNNPLGVL 336
>gi|119946648|ref|YP_944328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychromonas ingrahamii
37]
gi|119865252|gb|ABM04729.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Psychromonas ingrahamii 37]
Length = 406
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 94/344 (27%), Positives = 156/344 (45%), Gaps = 13/344 (3%)
Query: 1 MRQF-LVIIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ L++ A+ N+F A Y L+D N+G V++EN D NPASL
Sbjct: 16 MKKISLLVTALIFSFNLFANPTITPSAPEIGAKGYLLIDFNSGKVLSENNSDVRLNPASL 75
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TK+MT+Y++ +K +TIS+ A S + G +++ + + +I+
Sbjct: 76 TKMMTSYIIGQEIKSGNLSPDDKVTISEKAWSKNFPESSKMFIEVGKEVSVADLNRGIII 135
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+AE + +E F MN+ + LG++ T F N+HG+ GHYTT DMAIL
Sbjct: 136 QSGNDACVAMAEYIAGSEGAFADLMNSWAAQLGMNNTQFKNSHGLTAEGHYTTPHDMAIL 195
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASA 232
+ + D P + K + G PN N L DG+KTG T +G+++++SA
Sbjct: 196 AQALINDVPDEYLIYSEKSFKFNGIDQPNRNALLWDKSLDVDGIKTGHTNEAGYSLISSA 255
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP-- 290
+ LI+V++G + R S LL+ GF N + ++ P
Sbjct: 256 TKDGMRLISVVMGTRSTSARLTESKKLLNWGFRFFETLTPYNAGDQLANERIWMGSQPMI 315
Query: 291 --NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++ T N + E +K ++
Sbjct: 316 RLGVKDDTPITLPRGEAKNLTANFIIENE-LRAPIQKGDVVGKV 358
>gi|322616338|gb|EFY13247.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322619588|gb|EFY16463.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322622716|gb|EFY19561.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322628628|gb|EFY25415.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322631565|gb|EFY28321.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322637092|gb|EFY33795.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322641708|gb|EFY38344.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322644498|gb|EFY41038.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648431|gb|EFY44883.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322654166|gb|EFY50489.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658081|gb|EFY54348.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322663555|gb|EFY59757.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322670291|gb|EFY66431.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322671527|gb|EFY67649.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322676883|gb|EFY72950.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322682808|gb|EFY78827.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322686487|gb|EFY82469.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323196059|gb|EFZ81222.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323196794|gb|EFZ81938.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323204806|gb|EFZ89801.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323208966|gb|EFZ93903.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323209715|gb|EFZ94642.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323215197|gb|EFZ99942.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323222423|gb|EGA06799.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323229875|gb|EGA13998.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323233100|gb|EGA17196.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323240835|gb|EGA24877.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323243152|gb|EGA27172.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323248693|gb|EGA32621.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323251695|gb|EGA35562.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323257509|gb|EGA41197.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323261490|gb|EGA45071.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323267921|gb|EGA51400.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323272012|gb|EGA55427.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
Length = 400
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 149/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDM 255
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + + +
Sbjct: 256 RLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKPEVNLGAG 315
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 316 DAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 354
>gi|257092335|ref|YP_003165976.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257044859|gb|ACV34047.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 378
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 88/325 (27%), Positives = 154/325 (47%), Gaps = 6/325 (1%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ L + L++ +G +A PD +PASLTKLMTAY+ F+ LK+
Sbjct: 17 VVASAQQLPTPPALAAKSWLLIEAASGQELAAQAPDQRLDPASLTKLMTAYLSFAALKQG 76
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ P+ +S+ A + S + G+ + +++ LK +IV+S ND VA+AE++ E+
Sbjct: 77 TLKVDQPVPVSQKAWKTGGSRMFIQVGTQVKVEDLLKGMIVQSGNDACVALAEAIAGDEE 136
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQIK 191
F Q MN ++ LG+ + F N+ G+ HYTTARD+A L+ + DFP Y+ +K
Sbjct: 137 NFAQMMNREAQRLGMKGSSFRNSSGLPDPQHYTTARDLATLAGALIRDFPDEYAKYYSLK 196
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
PN N + DG+KTG T A+G+ +V+SA +G + L++V+LGA +
Sbjct: 197 EFRYNNITQPNRNRLLWIDPTVDGLKTGHTEAAGYCLVSSAKRGPRRLLSVVLGAPSDSV 256
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R + S LL+ GF + + ++ S+ ++ +
Sbjct: 257 RAQESLKLLNYGFQFYDAVQVYAKNEEVSTLKVWKGTASSVKLGFVNDLVIAVPKGFGPK 316
Query: 308 TQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++ + +L
Sbjct: 317 IRTELV-SQQPLIAPVAQGQVLGTL 340
>gi|119713206|gb|ABL97274.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine bacterium
EB0_50A10]
Length = 384
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 91/336 (27%), Positives = 151/336 (44%), Gaps = 5/336 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ L+ + + + F+ A L Y L++ NT VIAE D PAS+TK+M
Sbjct: 1 MKKLLIPLLLTNILYAQSFVPDAPELDLKSYILIEPNTNTVIAEFNSDSEIEPASMTKIM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T+YVV + L + IS+ A S + G +++ + LK +I++S ND +
Sbjct: 61 TSYVVADQIANDLISLDDQVLISEKAWRMEGSKMFIEAGKKVSVSDLLKGIIIQSGNDAS 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE TE+ FV MN + L ++ T F N+ G+ H+++A+D+A L+
Sbjct: 121 VAIAEYAGGTERGFVDLMNAYAGALSMNNTIFKNSTGLPDENHFSSAKDLATLTSDFIKK 180
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP + K K N N + +DG+KTG T A+G+ +V SA +G+ LI
Sbjct: 181 FPDIYSLYNEKQFTFNNIKQLNRNKLLWRDDSSDGVKTGHTEAAGYCLVGSAKRGNMRLI 240
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEV 296
V+ G+ N R S LL GF +K +N + + + + + E++
Sbjct: 241 TVVAGSDSDNNRFLASQRLLEYGFRFFATQKVLNANQEYKNINIWGGLEKSLSLGVLEDI 300
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + + + E +
Sbjct: 301 SITLPRTSFKDLTINYN-YINNIQAPIEIGQTIGTL 335
>gi|294637039|ref|ZP_06715354.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
23685]
gi|291089736|gb|EFE22297.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
23685]
Length = 399
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 85/335 (25%), Positives = 139/335 (41%), Gaps = 11/335 (3%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + Y LLD ++G V+ E D +PASLTK+M +YV+
Sbjct: 19 LTLVALPLLAAEPAPPQINAKAYILLDYDSGRVLTEGNADQRLDPASLTKIMASYVIGQA 78
Query: 69 LKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVA 122
LK K + + K+A K G + + + ++++S ND ++A
Sbjct: 79 LKSGKIAPGDMVVVGKDAWATGNPVLRGSSLMFLKPGDRVPVSELNRGVVIQSGNDASIA 138
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A+ + ++ FV MN ++ GL THF HG+ G Y++ARDMA++S + D P
Sbjct: 139 LADHVAGSQDAFVNLMNKYVESWGLKNTHFRTVHGLDSAGQYSSARDMALISQHLIADVP 198
Query: 183 QYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ K + N N T L DG+KTGFT +G N+VASA G LI+
Sbjct: 199 DEYQLNKEKEFTFNNIRQTNRNRLLWDTSLNVDGVKTGFTNGAGHNLVASATDGPMRLIS 258
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVC 297
V+LGA R + S LL+ GF I + + S + +
Sbjct: 259 VVLGAPSDRVRFEESKKLLTWGFRFYETVTPIKIGQPFTTQKVWYGERSEVALGVDKSAA 318
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + + + + +K ++
Sbjct: 319 VTIPRGQMKDLKASYTLTQPTLEAPLKKGQVVGTI 353
>gi|268590223|ref|ZP_06124444.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM
1131]
gi|291314506|gb|EFE54959.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM
1131]
Length = 401
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 90/339 (26%), Positives = 150/339 (44%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L ++ S +A + L+D N+G ++A PD +PASLTK+MT+YV
Sbjct: 17 LSLLVAVSTSAYAAQTPVAPQVDAKAFVLMDYNSGKILASGNPDERLDPASLTKIMTSYV 76
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAND 118
+ + K +T+ ++A K +++ + K ++++S ND
Sbjct: 77 IGQAVNAGKITPQDMVTVGEDAWATGNPVLKGSSLMFLKPKDRVSVLDLNKGIVIQSGND 136
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
++A+A+ + ++ FV MN + +GL THF HG+ G Y+TARDMA+L+ +
Sbjct: 137 ASIALADYVAGSQDSFVSLMNQYVQKIGLKNTHFKTVHGLDSEGQYSTARDMALLTQAMI 196
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N L DG+KTG T +G N+VASA +GD
Sbjct: 197 RDVPDEYALHKEKEFTFNKIRQPNRNRLLWNQNLKVDGVKTGHTSGAGHNLVASATEGDM 256
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + + S ++
Sbjct: 257 RLISVVLGAPSDRVRFSESEKLLTWGFRFFETVTPIKADATLKKQRVWFGDTSEVDLGVA 316
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++V T + N ++ +S K +
Sbjct: 317 DDVSITIPKGQLQNLKVDIQLTNDSLEAPLAKNQAVGTI 355
>gi|228922828|ref|ZP_04086126.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228836883|gb|EEM82226.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
Length = 385
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 90/320 (28%), Positives = 147/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MTL+ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTLNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNQVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F T +K K Q + + S+ V K+ N + +E +
Sbjct: 270 DYAFGQYTTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 330 KKVKAPIKKGDALGTLVIKK 349
>gi|225182115|ref|ZP_03735543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
AHT 1]
gi|225167202|gb|EEG76025.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
AHT 1]
Length = 382
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 82/343 (23%), Positives = 151/343 (44%), Gaps = 10/343 (2%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ + I+ + +L + ++ L++ ++G + E D P PAS TK+
Sbjct: 1 MKKSIVAILLITLLLTTGSVYGESFDSRADVAVLMEASSGQFLYEKNADTPLPPASTTKI 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNAS--EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
MT + F L+ +S+NA E S +++ + + + + SAN
Sbjct: 61 MTLLLAFEALERGDIDWDDTTIVSRNAWSAEVVGSRMFLDLDQEVSIRDLIYGISIVSAN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+AE L +E+ FVQ MN ++ LG++ T F N G+ GH +ARD+AILS +
Sbjct: 121 DGTVALAEHLSGSEEAFVQQMNQRAQELGMTNTVFRNTSGLPADGHVMSARDIAILSREL 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGD 236
+ P + N N +F GA+G+KTG+T S FN+ +A++
Sbjct: 181 IVNHPGILDIETQPEFTFNDIHQYNWNRRFLSSFEGANGLKTGWTDESRFNLAGAALRDG 240
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN----EVPNI 292
+ LI+V++GA + R ++ LL+ GF + + +
Sbjct: 241 RQLISVVMGAESESERVAATSELLNHGFNQFSPQTIAQKGEVVAEVAVKDGRQQVVPVTV 300
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+EV + + ++ A+ E+ E+ + + +
Sbjct: 301 PQEVEVAVPQGRENDIELVVAE--ETLTAPVEEGAVAGQLLVQ 341
>gi|167037532|ref|YP_001665110.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115947|ref|YP_004186106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166856366|gb|ABY94774.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929038|gb|ADV79723.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 381
Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats.
Identities = 96/350 (27%), Positives = 159/350 (45%), Gaps = 15/350 (4%)
Query: 2 RQFLVIIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
++ L ++ +L+ F + K L++ NTG ++ E P PAS+T
Sbjct: 3 KRLLTLLVSVILAISFVLNGTVYADTLNLKSKSAILMEANTGQILYEKDSHKPLPPASVT 62
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT + + K +T + SK+A + + + G MT+D+ +K + + SAN
Sbjct: 63 KVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSAN 122
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D +VA+AE + TE+ FV+ MN +K LG T F NA G+ + GH T+ D+A++S +
Sbjct: 123 DASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMISREL 182
Query: 178 K-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+ ++ L NTN + + G DG+KTG T + + + A+A +GD
Sbjct: 183 VKHESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRGD 242
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNI- 292
LIAV+ GA D TR +A LL GF N K + + V +
Sbjct: 243 TRLIAVVFGAPDSETRFSEAAKLLDYGFANYESVKVASKGQSFGNVKVLKGKREAVSVVC 302
Query: 293 --SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN----KITKK 336
E + + E N T+++ + I +K K+ KK
Sbjct: 303 RDDEYILIKKGEGKNIKTEVELKNAVLAPLAKEVPIGTVKITQDGKVIKK 352
>gi|16128807|ref|NP_415360.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli str. K-12 substr. MG1655]
gi|89107690|ref|AP_001470.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12
substr. W3110]
gi|157160319|ref|YP_001457637.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
HS]
gi|170020804|ref|YP_001725758.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
ATCC 8739]
gi|170080498|ref|YP_001729818.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli str. K-12 substr. DH10B]
gi|188494572|ref|ZP_03001842.1| penicillin-binding protein 6 [Escherichia coli 53638]
gi|238900098|ref|YP_002925894.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli BW2952]
gi|253774159|ref|YP_003036990.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160916|ref|YP_003044024.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli B
str. REL606]
gi|256023565|ref|ZP_05437430.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia sp.
4_1_40B]
gi|297518732|ref|ZP_06937118.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
OP50]
gi|312970918|ref|ZP_07785097.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70]
gi|2506804|sp|P08506|DACC_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacC;
Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
Full=Penicillin-binding protein 6; Short=PBP-6; Flags:
Precursor
gi|1651381|dbj|BAA35542.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12
substr. W3110]
gi|1787062|gb|AAC73926.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli str. K-12 substr. MG1655]
gi|157065999|gb|ABV05254.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli HS]
gi|169755732|gb|ACA78431.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC
8739]
gi|169888333|gb|ACB02040.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli str. K-12 substr. DH10B]
gi|188489771|gb|EDU64874.1| penicillin-binding protein 6 [Escherichia coli 53638]
gi|238860730|gb|ACR62728.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli BW2952]
gi|242376630|emb|CAQ31340.1| penicillin-binding protein 6 [Escherichia coli BL21(DE3)]
gi|253325203|gb|ACT29805.1| Beta-lactamase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253972817|gb|ACT38488.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli B str. REL606]
gi|253977037|gb|ACT42707.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli BL21(DE3)]
gi|309701117|emb|CBJ00415.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
[Escherichia coli ETEC H10407]
gi|310336679|gb|EFQ01846.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70]
gi|315619844|gb|EFV00363.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 3431]
gi|332342172|gb|AEE55506.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli UMNK88]
Length = 400
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 317 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 354
>gi|295399047|ref|ZP_06809029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus
thermoglucosidasius C56-YS93]
gi|294978513|gb|EFG54109.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus
thermoglucosidasius C56-YS93]
Length = 393
Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats.
Identities = 89/357 (24%), Positives = 152/357 (42%), Gaps = 21/357 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-------------IAETNKLPYYTLLDTNTGHVIAENYP 47
M++ L+ + + +F S I N+ L++ +TG V+ E
Sbjct: 1 MKKQLIRLLLFASVFLFTISSYVHAEEKKSTARGIELANEARSAILIERDTGAVLYEKNA 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ PAS+TK+MT ++ + + + + S+ A+ S + G MT+D
Sbjct: 61 NEKLPPASMTKIMTMLLIMEAIDKGELSYKEKVRASEYAASMGGSQIFLEPGEEMTVDEL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
L+ + + S ND +VA+AE + +E+ FV+ MN +K LGL T F NA G+ GHY++A
Sbjct: 121 LRGIAIGSGNDASVALAERIAGSEEAFVEMMNKKAKELGLKNTSFQNATGLPAKGHYSSA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQI----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
DMAI++ + + + + K NTN V + G DG+KTGFT
Sbjct: 181 HDMAIMARELLKYEDITKYTSKYEDYLRENTDKKFWLVNTNRLVKFYPGVDGLKTGFTSE 240
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----D 279
+ + + A+A + +IAV+ GA RN +L F + +
Sbjct: 241 AKYCLTATAKKNGMRVIAVVFGAPTPKERNAQITRMLDYAFSQYKTHPVLKRNEVVAHAN 300
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ SE + K+ + N K K ++ +K L I K+
Sbjct: 301 VSKGKKKTVALVTSEPISVLTKKGQSVNKIEKVIKVNKNAKAPIKKGDELGVLILKQ 357
>gi|291616858|ref|YP_003519600.1| DacC [Pantoea ananatis LMG 20103]
gi|291151888|gb|ADD76472.1| DacC [Pantoea ananatis LMG 20103]
gi|327393284|dbj|BAK10706.1| penicillin-binding protein 6 precursor DacC [Pantoea ananatis
AJ13355]
Length = 400
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 88/337 (26%), Positives = 148/337 (43%), Gaps = 11/337 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ +A ++ A + L+D +G V+ E+ D +PASLTK+MT+YVV
Sbjct: 18 LLLVAPMAVFAEQAPAAPQIDAKAWILIDYASGKVLTESNADQRLDPASLTKMMTSYVVG 77
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIA 120
+K K +T+ ++A K G + + K ++++S ND
Sbjct: 78 QAIKSGKIKPDDMVTVGQDAWATGNPKLRGSSLMFLKPGDRIPVHELNKGIVIQSGNDAC 137
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+A+ + ++ F+ MNN K LGL THFM HG+ G Y+TARDMA++ + D
Sbjct: 138 IALADYVAGSQDSFIGLMNNYVKALGLKNTHFMTVHGLDADGQYSTARDMALIGQALIRD 197
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+ + K + N N + L DG+KTG T +G N+VASA +GD L
Sbjct: 198 VPEEYALNKEKEFTFNNIRQMNRNRLLWSSNLKVDGIKTGHTSGAGNNLVASATEGDMRL 257
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE 295
I+V+LG R + S LL+ GF I + + + + ++
Sbjct: 258 ISVVLGTASDAIRFRESEKLLTWGFRFFETVTPIKAGAPFAQQRVWFGEHNQVNLGVEKD 317
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + + +K ++
Sbjct: 318 AALTIPKGQMKNLKASYSLTSPQLEAPLKKNQVVGTI 354
>gi|242239720|ref|YP_002987901.1| beta-lactamase [Dickeya dadantii Ech703]
gi|242131777|gb|ACS86079.1| Beta-lactamase [Dickeya dadantii Ech703]
Length = 401
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 85/337 (25%), Positives = 152/337 (45%), Gaps = 11/337 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ + S+ S + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 19 FLTLFSPSSYAEQPSAPPQIDAKAFILMDATSGRVLAELNADERLDPASLTKIMTSYVVG 78
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIA 120
+K K +T+ +A + K G + + + K ++++S ND +
Sbjct: 79 QAIKAGKIKPDDRVTVGSDAWANGNPSLRGSSLMFLKPGDQILVSDLNKGMVIQSGNDAS 138
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+A+ + +++ F+ MN + +LGLS +HF+ HG+ G Y+TARDM+ L+ + D
Sbjct: 139 IALADYVAGSQQAFISLMNQYAASLGLSNSHFLTVHGLDTPGQYSTARDMSRLTQALIRD 198
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P K PN N L DG+KTGFT +G+N+V+SA++G L
Sbjct: 199 LPDEYALHSEKAFTFNKINQPNRNRLLWSATLRVDGVKTGFTHGAGYNLVSSAVEGGTRL 258
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEE 295
IAV+LG+ R + S LL+ GF + + + + ++++
Sbjct: 259 IAVVLGSSSDAIRFRESEKLLAWGFRFFETVTVVRTDEPFTTQRVWFGVENRVRLGVTQD 318
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + + ++ ++ +
Sbjct: 319 AAVTVPKGQVKNVKANFTLNARPLQAPLKQGQVVGSL 355
>gi|324112725|gb|EGC06701.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253]
gi|325496781|gb|EGC94640.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia
fergusonii ECD227]
Length = 403
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 96/338 (28%), Positives = 153/338 (45%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ A A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 20 LLFLFAPTVQAAEQAIDAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 79
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ ++A K G +++ + K +I++S ND
Sbjct: 80 GQALKADKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 139
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+LS +
Sbjct: 140 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLSKALIH 199
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DG+KTG T +G+N+VASA QGD
Sbjct: 200 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLHVDGLKTGTTAGAGYNLVASATQGDMR 259
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 260 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVSQRVWFGDKSEVKLGAGE 319
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + ++ +K ++
Sbjct: 320 AGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 357
>gi|170768996|ref|ZP_02903449.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
TW07627]
gi|170122068|gb|EDS90999.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
TW07627]
Length = 403
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 98/338 (28%), Positives = 152/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 20 LLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 79
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +TI K+A K G +++ + K +I++S ND
Sbjct: 80 GQALKADKIKLTDMVTIGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 139
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 140 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 199
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 200 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 259
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 260 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 319
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 320 GGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 357
>gi|229086646|ref|ZP_04218815.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock3-44]
gi|228696728|gb|EEL49544.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock3-44]
Length = 386
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 87/320 (27%), Positives = 145/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ E P+ PAS+TK+MT ++ +++ K L + S+
Sbjct: 31 AEQASSAIVIEQDTGKVLFEKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASE 90
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 91 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 150
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DM+I+ + ++ K
Sbjct: 151 LGLKNTHFQNPTGLPAKDHYSTAYDMSIMAKELMKYPLIRKYTGKYEDYLRENTEKKFWL 210
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 211 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 270
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPN----ISEEVCTTQKEIINYNTQMKEAKDK 316
F T +K K + + S+ V K+ N + +E +
Sbjct: 271 DYAFGQYTTKKMYKRGEKIQTVKVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEIITE 330
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 331 KKVKAPIKKGDALGTLVIKK 350
>gi|138895883|ref|YP_001126336.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus
thermodenitrificans NG80-2]
gi|196248772|ref|ZP_03147472.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
gi|134267396|gb|ABO67591.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus
thermodenitrificans NG80-2]
gi|196211648|gb|EDY06407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
Length = 391
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 89/320 (27%), Positives = 143/320 (44%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
++ L++ +TG V+ E P PAS+TK+MT ++ + E K + S+
Sbjct: 36 ADEAKSAILIERDTGKVLYEKNPHEKLPPASMTKIMTMLLIMEAIDEGKLSYDEKVRTSE 95
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ S + G MT+D L+ + + SAND +VA+AE + +E+ FV+ MN +K
Sbjct: 96 YAASMGGSQIFLEPGEEMTVDELLRAIAIGSANDASVAMAERIAGSEEAFVEMMNEKAKE 155
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----KGLEIKGKKY 200
LGL T F N G+ GHY++A DMAI++ + + + + K
Sbjct: 156 LGLKETKFANTTGLPAEGHYSSAYDMAIMARELLKYEGITKYTSKYEDYLRENTDKKFWL 215
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT +G+ + A+A + +IAV+ GA +RN +L
Sbjct: 216 VNTNRLVKFYPGVDGLKTGFTSEAGYCLTATAKKNGMRVIAVVFGAPTPKSRNAQITKML 275
Query: 261 SMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
F++ D + + SE V K+ + K K K
Sbjct: 276 DYAFHHYQAHPVYKRNETVARVDVSKGKQKSVAAVTSEPVSVLTKKGQSVEQIEKVVKVK 335
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ K L I K+
Sbjct: 336 DGVKAPVRKGDELGVLILKQ 355
>gi|124265504|ref|YP_001019508.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium
petroleiphilum PM1]
gi|124258279|gb|ABM93273.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium
petroleiphilum PM1]
Length = 384
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 101/347 (29%), Positives = 160/347 (46%), Gaps = 17/347 (4%)
Query: 1 MRQFLVIIAMAMLS----NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ V++ + Y L D T V+A PD P PASL
Sbjct: 1 MKRLFVLLFAVATALTGVAAQAQAVQPPEIAARSYLLFDVTTNQVLAAKDPDSPIEPASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TKLM+AY+VF LK+KK LT + +S+ A S S S +T+D+ LK IV
Sbjct: 61 TKLMSAYLVFQALKDKKLTLTQTLPVSERAWRTGMTGASRSFLPLNSQVTVDDLLKGEIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND V +AE + + ++FV MN ++ GL AT F N G+ GH +TARD+A++
Sbjct: 121 QSGNDATVVLAEGVGGSLEQFVAMMNRQAQAFGLKATTFKNPEGLPAAGHTSTARDLAVI 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ R+ DFP+Y+ Y ++ K PN N + DG+KTGFT A+G+ ++ +A
Sbjct: 181 ATRLVQDFPEYLRYSVMREFTFNKIKQPNRNLLLYRDPTVDGLKTGFTDAAGYCMITTAK 240
Query: 234 QG----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLS 286
+ + LI+V+LGA +R S LL+ G+ K ++ + S
Sbjct: 241 RDFPNGPRRLISVVLGAASMESRANESQKLLNWGYTAFDAVKLFDANQAVVSPPIWKGSS 300
Query: 287 NEVPNISE---EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ S V + + T + + + + +K
Sbjct: 301 STAKLGSAAAVYVSVPKGDGDKLKTDISRTDPLVAPLAKGQVVGSIK 347
>gi|326391736|ref|ZP_08213259.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
ethanolicus JW 200]
gi|325992236|gb|EGD50705.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
ethanolicus JW 200]
Length = 381
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 95/346 (27%), Positives = 158/346 (45%), Gaps = 11/346 (3%)
Query: 2 RQFLVIIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
++ L ++ +L+ F + K L++ NTG ++ E P PAS+T
Sbjct: 3 KRLLTLLVSVILAISFVLNGTVYADTLNLKSKSAILIEANTGQILYEKDSHKPLPPASVT 62
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT + + K +T + SK+A + + + G MT+D+ +K + + SAN
Sbjct: 63 KVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSAN 122
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D +VA+AE + TE+ FV+ MN +K LG T F NA G+ + GH T+ D+A++S +
Sbjct: 123 DASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMISREL 182
Query: 178 K-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+ ++ L NTN + + GADG+KTG T + + + A+A +GD
Sbjct: 183 VKHESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGADGIKTGSTSEALYCMAATAKRGD 242
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS--- 293
LIAV+ GA D TR +A LL GF N K + + + +S
Sbjct: 243 TRLIAVVFGAPDSETRFSEAAKLLDYGFANYESVKVASKGQSFGNVKVFKGKKQAVSVVC 302
Query: 294 ---EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
E + + E N T+++ + I +K K
Sbjct: 303 RDDEYILIKKGEGKNIKTEVELKNAVLAPLAKEVPIGTVKITQDGK 348
>gi|218548358|ref|YP_002382149.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia
fergusonii ATCC 35469]
gi|218355899|emb|CAQ88514.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia fergusonii ATCC 35469]
Length = 400
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 96/338 (28%), Positives = 153/338 (45%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ A A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 LLFLFAPTVQAAEQAIDAPSVDARAWVLMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ ++A K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGRDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+LS +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLSKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DG+KTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLHVDGLKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVSQRVWFGDKSEVKLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + ++ +K ++
Sbjct: 317 AGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 354
>gi|300929353|ref|ZP_07144826.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
187-1]
gi|300947071|ref|ZP_07161292.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
116-1]
gi|300957042|ref|ZP_07169288.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
175-1]
gi|301646276|ref|ZP_07246167.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
146-1]
gi|331641359|ref|ZP_08342494.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli H736]
gi|300316182|gb|EFJ65966.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
175-1]
gi|300453310|gb|EFK16930.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
116-1]
gi|300462699|gb|EFK26192.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
187-1]
gi|301075479|gb|EFK90285.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
146-1]
gi|323938194|gb|EGB34454.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520]
gi|323942711|gb|EGB38876.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482]
gi|323962952|gb|EGB58524.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489]
gi|331038157|gb|EGI10377.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli H736]
Length = 407
Score = 214 bits (543), Expect = 2e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 24 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 83
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 84 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 143
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 144 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 203
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 204 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 263
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 264 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 323
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 324 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 361
>gi|183598299|ref|ZP_02959792.1| hypothetical protein PROSTU_01686 [Providencia stuartii ATCC 25827]
gi|188020471|gb|EDU58511.1| hypothetical protein PROSTU_01686 [Providencia stuartii ATCC 25827]
Length = 401
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 92/353 (26%), Positives = 149/353 (42%), Gaps = 22/353 (6%)
Query: 2 RQFLVI----------IAMAML-SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
++F + + +A+ +A + L+D ++G ++A PD
Sbjct: 3 KKFFTLKARYLGTGLGLLVAVSHFAYAAGTPVAPQVDAKAFVLMDYDSGKILASGNPDER 62
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTL 104
+PASLTK+MT+YVV +K K +T+ +A K +++
Sbjct: 63 LDPASLTKMMTSYVVGQAIKAGKITPQDMVTVGVDAWATGNPVLKGSSLMFLKPKDRVSV 122
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ K ++++S ND ++A+A+ + ++ FV MN K LGL THF HG+ G Y
Sbjct: 123 LDLNKGVVIQSGNDASIALADYVAGSQDSFVSLMNEYVKQLGLKNTHFKTVHGLDSEGQY 182
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCA 223
+TARDMAIL+ + D P + K + PN N L DG+KTG T
Sbjct: 183 STARDMAILAQAMIRDVPDEYALHKEKEFTFNKIRQPNRNRLLWSQNLNVDGVKTGHTSG 242
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKD 279
+G N+VASA G LI+V+LGA R S LL+ GF I +
Sbjct: 243 AGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRFFETVTPIKADQTLQTQR 302
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + S + ++ T + N ++ S K +
Sbjct: 303 VWFGDKSEVALGVEKDTAITIPKGQLQNLKVSYTLTNPSIEAPLAKNQAVGTV 355
>gi|304559487|gb|ADM42151.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60]
Length = 399
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 87/344 (25%), Positives = 145/344 (42%), Gaps = 12/344 (3%)
Query: 1 MRQFLVIIAMAMLSN-IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+R+ + ++++++ + Y LLD ++G V+ E D +PASLTK+
Sbjct: 10 IRRLTLGASLSLVALPLLAADPAPPQINAKAYILLDYDSGRVLTEGNADERLDPASLTKI 69
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIV 113
M +YV+ LK K + + K+A S K G + + + +++
Sbjct: 70 MASYVIGQALKSGKIAPGDMVVVGKDAWATGNPLLRGSSLMFLKPGDRVPVAELNRGVVI 129
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND ++A+A+ + ++ FV MN GL THF HG+ G Y++ARDMA++
Sbjct: 130 QSGNDASIALADHVAGSQDAFVNLMNQYVGAWGLKNTHFRTVHGLDSEGQYSSARDMALI 189
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASA 232
S R+ D P + K + N N + L DG+KTGFT +G N+VASA
Sbjct: 190 SQRLIADVPDEYQLNKEKEFTFNKIRQINRNRLLWDSSLNVDGVKTGFTGGAGHNLVASA 249
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNE 288
G LI+V+LGA R S LL+ GF I + + S
Sbjct: 250 TDGPMRLISVVLGAPTDRIRFDESKKLLTWGFRFYETVTPIKVGQPFTTQKVWYGERSEV 309
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + T + + + +K +
Sbjct: 310 PLGVDKSAAVTIPRGQMKDLKASYTLTQSQLEAPLKKGQAVGTI 353
>gi|269139610|ref|YP_003296311.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202]
gi|267985272|gb|ACY85101.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202]
Length = 411
Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats.
Identities = 87/344 (25%), Positives = 145/344 (42%), Gaps = 12/344 (3%)
Query: 1 MRQFLVIIAMAMLSN-IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+R+ + ++++++ + Y LLD ++G V+ E D +PASLTK+
Sbjct: 22 IRRLTLGASLSLVALPLLAADPAPPQINAKAYILLDYDSGRVLTEGNADERLDPASLTKI 81
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIV 113
M +YV+ LK K + + K+A S K G + + + +++
Sbjct: 82 MASYVIGQALKSGKIAPGDMVVVGKDAWATGNPLLRGSSLMFLKPGDRVPVAELNRGVVI 141
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND ++A+A+ + ++ FV MN GL THF HG+ G Y++ARDMA++
Sbjct: 142 QSGNDASIALADHVAGSQDAFVNLMNQYVGAWGLKNTHFRTVHGLDSEGQYSSARDMALI 201
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASA 232
S R+ D P + K + N N + L DG+KTGFT +G N+VASA
Sbjct: 202 SQRLIADVPDEYQLNKEKEFTFNKIRQINRNRLLWDSSLNVDGVKTGFTGGAGHNLVASA 261
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNE 288
G LI+V+LGA R S LL+ GF I + + S
Sbjct: 262 TDGPMRLISVVLGAPTDRIRFDESKKLLTWGFRFYETVTPIKVGQPFTTQKVWYGERSEV 321
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + T + + + +K +
Sbjct: 322 PLGVDKSAAVTIPRGQMKDLKASYTLTQSQLEAPLKKGQAVGTI 365
>gi|323976776|gb|EGB71864.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509]
Length = 407
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 98/338 (28%), Positives = 152/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 24 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 83
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A S K G +++ + K +I++S ND
Sbjct: 84 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 143
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 144 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 203
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 204 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 263
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 264 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQHVWFGDKSEVNLGAGE 323
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 324 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 361
>gi|260450014|gb|ACX40436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1]
Length = 400
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 257 LISVVLGAKTDRFRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 317 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 354
>gi|291085651|ref|ZP_06353607.2| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
29220]
gi|291070535|gb|EFE08644.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
29220]
Length = 413
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 98/338 (28%), Positives = 152/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++I +A + + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 30 LLILLAPTVQAAEQPTAPPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 89
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K L +T+ K+A S K G + + + K +I++S ND
Sbjct: 90 GQALKAGKINLNDMVTVGKDAWATGNPALRGSSVMFLKPGDQVAVSDLNKGVIIQSGNDA 149
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 150 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAAGQFSTARDMALLGKALIH 209
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N T L DGMKTG T +G+N+VASA QGD
Sbjct: 210 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSTNLNVDGMKTGTTAGAGYNLVASATQGDMR 269
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 270 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 329
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 330 AGSVTIPRGQLKNLKASFTLTEPQLTAPLKKGQVVGTI 367
>gi|256021090|ref|ZP_05434955.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella sp. D9]
Length = 400
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 150/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLINTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 317 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 354
>gi|194438401|ref|ZP_03070491.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
gi|301027029|ref|ZP_07190410.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
196-1]
gi|307137467|ref|ZP_07496823.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
H736]
gi|194422625|gb|EDX38622.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
gi|299879457|gb|EFI87668.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
196-1]
Length = 403
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 20 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 79
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 80 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 139
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 140 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 199
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 200 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 259
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 260 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 319
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 320 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 357
>gi|15800591|ref|NP_286605.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O157:H7 EDL933]
gi|15830173|ref|NP_308946.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O157:H7 str. Sakai]
gi|110641041|ref|YP_668771.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
536]
gi|157157612|ref|YP_001462035.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
E24377A]
gi|195936884|ref|ZP_03082266.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O157:H7 str. EC4024]
gi|209918088|ref|YP_002292172.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
SE11]
gi|215485925|ref|YP_002328356.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O127:H6 str. E2348/69]
gi|218553425|ref|YP_002386338.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
IAI1]
gi|218688622|ref|YP_002396834.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
ED1a]
gi|218694313|ref|YP_002401980.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
55989]
gi|218699214|ref|YP_002406843.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
IAI39]
gi|218704263|ref|YP_002411782.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
UMN026]
gi|254792035|ref|YP_003076872.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O157:H7 str. TW14359]
gi|260843090|ref|YP_003220868.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O103:H2
str. 12009]
gi|260854131|ref|YP_003228022.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O26:H11
str. 11368]
gi|260867013|ref|YP_003233415.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O111:H-
str. 11128]
gi|261225489|ref|ZP_05939770.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli O157:H7 str. FRIK2000]
gi|293433137|ref|ZP_06661565.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
B088]
gi|306812759|ref|ZP_07446952.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
NC101]
gi|307314524|ref|ZP_07594127.1| Beta-lactamase [Escherichia coli W]
gi|312969138|ref|ZP_07783345.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75]
gi|12513851|gb|AAG55215.1|AE005265_5 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6
[Escherichia coli O157:H7 str. EDL933]
gi|13360378|dbj|BAB34342.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
[Escherichia coli O157:H7 str. Sakai]
gi|110342633|gb|ABG68870.1| penicillin-binding protein 6 precursor [Escherichia coli 536]
gi|157079642|gb|ABV19350.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A]
gi|209775538|gb|ACI86081.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
[Escherichia coli]
gi|209775540|gb|ACI86082.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
[Escherichia coli]
gi|209775542|gb|ACI86083.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
[Escherichia coli]
gi|209775544|gb|ACI86084.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
[Escherichia coli]
gi|209775546|gb|ACI86085.1| D-alanyl-D-alanine carboxypeptidase penicillin-binding protein 6
[Escherichia coli]
gi|209911347|dbj|BAG76421.1| penicillin-binding protein 6 [Escherichia coli SE11]
gi|215263997|emb|CAS08338.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli O127:H6 str. E2348/69]
gi|218351045|emb|CAU96749.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli 55989]
gi|218360193|emb|CAQ97743.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli IAI1]
gi|218369200|emb|CAR16955.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli IAI39]
gi|218426186|emb|CAR07008.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli ED1a]
gi|218431360|emb|CAR12238.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli UMN026]
gi|222032568|emb|CAP75307.1| Penicillin-binding protein 6 [Escherichia coli LF82]
gi|254591435|gb|ACT70796.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli O157:H7 str. TW14359]
gi|257752780|dbj|BAI24282.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O26:H11
str. 11368]
gi|257758237|dbj|BAI29734.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O103:H2
str. 12009]
gi|257763369|dbj|BAI34864.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli O111:H-
str. 11128]
gi|281177974|dbj|BAI54304.1| penicillin-binding protein 6 [Escherichia coli SE15]
gi|284920692|emb|CBG33755.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
[Escherichia coli 042]
gi|291323956|gb|EFE63378.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
B088]
gi|305853522|gb|EFM53961.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
NC101]
gi|306905947|gb|EFN36469.1| Beta-lactamase [Escherichia coli W]
gi|307552682|gb|ADN45457.1| penicillin-binding protein 6 precursor [Escherichia coli ABU 83972]
gi|312286540|gb|EFR14453.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75]
gi|312945356|gb|ADR26183.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O83:H1 str. NRG 857C]
gi|315060077|gb|ADT74404.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli W]
gi|320637705|gb|EFX07497.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O157:H7 str. G5101]
gi|320642829|gb|EFX12030.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O157:H- str. 493-89]
gi|320648286|gb|EFX16941.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O157:H- str. H 2687]
gi|320654123|gb|EFX22191.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320659747|gb|EFX27303.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O55:H7 str. USDA 5905]
gi|320664217|gb|EFX31368.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O157:H7 str. LSU-61]
gi|323155789|gb|EFZ41958.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli EPECa14]
gi|323159661|gb|EFZ45640.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli E128010]
gi|323165770|gb|EFZ51556.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella sonnei 53G]
gi|323172242|gb|EFZ57880.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli LT-68]
gi|323175540|gb|EFZ61135.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1180]
gi|323185244|gb|EFZ70609.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1357]
gi|323191008|gb|EFZ76275.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli RN587/1]
gi|323379365|gb|ADX51633.1| Beta-lactamase [Escherichia coli KO11]
gi|327253626|gb|EGE65255.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli STEC_7v]
Length = 400
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 317 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 354
>gi|332970912|gb|EGK09888.1| D-alanyl-D-alanine carboxypeptidase DacA [Psychrobacter sp.
1501(2011)]
Length = 412
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 89/339 (26%), Positives = 150/339 (44%), Gaps = 7/339 (2%)
Query: 2 RQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ FL+ +A+ S Y L+D +TG ++AE D P PASLTK+M
Sbjct: 34 KSFLLGSSILAVSSASLAATVPPPEMDNTAYILMDYDTGAILAEKNADQPLPPASLTKMM 93
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T++++ L + P+ +S+NA S + ++ + L+ +I++S N
Sbjct: 94 TSHIIEKKLMSGELKEDEPVIMSENAWCRGTSDQSCMYVPVHKSASVIDMLRGIIIQSGN 153
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D + A+AE + +E+ F Q MN +K LG++ T+F+NA G+ H+ +ARD+AIL+ I
Sbjct: 154 DASKAMAEHIAGSEQAFAQLMNAEAKELGMTNTNFVNATGMPDENHHASARDLAILARAI 213
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
Y + K N N + T DG+KTG T A+G+ + AS+++ D
Sbjct: 214 IKQGGDYYKIYSEKEFTYNNITQGNRNALLRTDPTVDGLKTGHTDAAGYCLAASSLRNDM 273
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISE 294
LI+VI+G+ R S LL+ GF + + + + NEV +
Sbjct: 274 RLISVIMGSKSMQARADQSRELLNWGFGHFSTKVVAPANQFVDTVPVYFGEKNEVKVATG 333
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
E + + K + I
Sbjct: 334 ETLKVLVAKTQSDKVSTVINMSDDIQAPIAKGQEVGRMI 372
>gi|285017609|ref|YP_003375320.1| D-alanyl-D-alanine carboxypeptidase [Xanthomonas albilineans GPE
PC73]
gi|283472827|emb|CBA15332.1| probable d-alanyl-d-alanine carboxypeptidase protein [Xanthomonas
albilineans]
Length = 402
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 89/328 (27%), Positives = 153/328 (46%), Gaps = 11/328 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + L+D +G V+A PAS+TK+MT+YVV + LK+ K
Sbjct: 42 PPAPKPAVSKSWVLMDYASGQVLAGENEHLRVAPASITKVMTSYVVAAELKQGKIKRDDQ 101
Query: 80 ITISKNASE-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ +S+ A S S F T L++ K + V+S ND A+A+AE +E+ F
Sbjct: 102 VMLSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAVQSGNDAAIALAEHTAGSEEAF 161
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
MNN + +G++ +HF+NAHG+ GHYTTA D+A+L + D+P+ Y +I+
Sbjct: 162 ANLMNNYAAKIGMTGSHFVNAHGLSAEGHYTTAYDLALLGRAMVRDYPETYAYNKIREFR 221
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ PN N + DG+KTG T +G+ +++SA +GDQ LIAV++G R +
Sbjct: 222 VGDITQPNRNLLLWRDPSVDGIKTGHTSEAGYCLLSSAQRGDQRLIAVVMGDSSEKQRAE 281
Query: 255 VSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTTQKEIINYNT 308
S +LL+ GF + + ++ + +++ V +
Sbjct: 282 DSLALLNWGFRFFETHRLYEPGKQVAQQRVWKGTEKQVLLGVAQPLLVSVPRGRYNELKP 341
Query: 309 QMKEAKDKESHFIDFEKITLLKNKITKK 336
+ K + + I ++ + K
Sbjct: 342 SIDVPKTLTAPIKQGQAIGTVRVTLDGK 369
>gi|308174134|ref|YP_003920839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM
7]
gi|307606998|emb|CBI43369.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Bacillus amyloliquefaciens DSM 7]
gi|328552733|gb|AEB23225.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
TA208]
gi|328912469|gb|AEB64065.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Bacillus amyloliquefaciens LL3]
Length = 389
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 84/353 (23%), Positives = 151/353 (42%), Gaps = 17/353 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---------KLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + + + +L + A+ + + L++ +TG ++
Sbjct: 1 MKRLISTLLIGILLTASAPSAFAKPDGKHTSELAHEAKSAVLIERDTGSILYNKNSRERL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+MT ++ L + ++ + S++A+ S + G MT+ LK +
Sbjct: 61 APASMTKIMTMLLIMEALDKGNIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+ S ND +VA+AE + +E+ FV MN +K LGL T F N G+ + GHY++A DMA
Sbjct: 121 AIASGNDASVAMAEYIAGSEEDFVSRMNKKAKELGLKDTSFKNPTGLPEKGHYSSAYDMA 180
Query: 172 ILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
++ + + ++ K NTN + + G DG+KTGFT + +
Sbjct: 181 KMAKELLKYDKITQFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTGEAKYC 240
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQ 283
+ A+A +G+ +IAV+ GA RN +L F +
Sbjct: 241 LTATAKKGNMRVIAVVFGASTPKERNAQVTKMLDYAFSQFKTHPLYKRNQIVGSVKVKKG 300
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
SE + K+ N + KE K + +K +L + + KK
Sbjct: 301 KQKLIKLTTSEPISLLAKKGENMDKVKKEVKINSNVTAPVKKGEVLGSLVLKK 353
>gi|289578311|ref|YP_003476938.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
italicus Ab9]
gi|289528024|gb|ADD02376.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
italicus Ab9]
Length = 381
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 92/346 (26%), Positives = 155/346 (44%), Gaps = 11/346 (3%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
++ L ++ +++ F + A K L++ NTG ++ E P PAS+T
Sbjct: 3 KKILTLLVSVIIAISFILDATAYADTLNLKAKSAILMEANTGQILYEKDSHKPLPPASVT 62
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT + + K ++ + SK+A + + + G MT+D+ +K + + SAN
Sbjct: 63 KVMTLLLAIEAIDSGKIKISDKVVTSKHAFDMGGTQIYLEIGEEMTVDDLMKAIAMNSAN 122
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D +VA+AE + TE+ FV+ MN +K LG T F NA G+ GH T+ D+A++S +
Sbjct: 123 DASVALAEYIAGTEENFVEIMNKRAKELGAKNTTFKNATGLPDEGHLTSVYDIAMISREL 182
Query: 178 K-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+ ++ L NTN + + G DG+KTG T + + + A+A + D
Sbjct: 183 VKHESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRAD 242
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNI- 292
LIAV+ GA D TR +A LL GF N K + + V +
Sbjct: 243 TRLIAVVFGAPDSETRFSETAKLLDYGFANYESVKIASKGQSFGNVKVLKGKKETVSGVC 302
Query: 293 --SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
E + + E N T+++ + I +K K
Sbjct: 303 HDDEYILIKKGEGKNIKTEVELKNAVLAPLAKEVPIGTVKITQDGK 348
>gi|300916310|ref|ZP_07133057.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
115-1]
gi|300416399|gb|EFJ99709.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
115-1]
Length = 407
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 24 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 83
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 84 GQALKADKIKLTDIVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 143
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 144 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 203
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 204 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 263
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 264 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 323
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 324 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 361
>gi|288555970|ref|YP_003427905.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
gi|288547130|gb|ADC51013.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
Length = 386
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 89/351 (25%), Positives = 153/351 (43%), Gaps = 15/351 (4%)
Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
MR+ L ++A+ ++ + + A +++ +TG V+ E P
Sbjct: 1 MRKVLSTLLAIVLVCTLAAPMGYAAEKQASLAENASSAIVIERDTGEVLFEKNSHDQLPP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS+TK+MT ++ + E I S+NA+ S + G MT+ + LK + V
Sbjct: 61 ASMTKIMTMLLIMEAIDEGSLSYDDKIRTSENAASMGGSQVFLEPGEEMTVTDMLKAIAV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND +VA+AE L TE++FV MN+ +K LGL T+FMN++G+ HYTTA D+A++
Sbjct: 121 ASGNDASVAMAEHLGGTEEEFVSMMNDKAKELGLENTNFMNSNGLPAENHYTTAYDLAMI 180
Query: 174 SWRIKTDFPQYM----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
S + + ++ NTN V + G DG+KTGFT + + +
Sbjct: 181 SKELLKYEDITKFTGIYEDYLRQDSENKFWLVNTNKLVKFYPGVDGLKTGFTREAMYCLT 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNL 285
A+A + D +I+VI+GA RN +L F K + +
Sbjct: 241 ATAQKNDMRVISVIMGAPTPKERNAQITEMLDYSFSQFKTHKLYERDHILAEVKVSKGDK 300
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ SE V K+ + + + + + K + ++
Sbjct: 301 NQIPVQTSESVSILTKKGESIDDVTERMEIDQQLHAPLAKGDTVGTLYIER 351
>gi|323705320|ref|ZP_08116895.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535222|gb|EGB24998.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 384
Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats.
Identities = 98/339 (28%), Positives = 158/339 (46%), Gaps = 10/339 (2%)
Query: 2 RQFLVIIAMAMLSNIF---PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ L + ++ ++ + K L+D NTG V+ E PAS+TK
Sbjct: 4 KTLLFTLIFVLICSVLLENFAYADNFNLKSKSAILMDANTGKVLYEKNSHEELPPASVTK 63
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT +V L K T + S++A + + + G MT+D+ LK + + SAND
Sbjct: 64 VMTMLLVIEALDSGKIKTTDKVVTSEHAYDMGGTQIYLEVGEEMTVDDLLKSVAMNSAND 123
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA+AE + +E+KFV+ MN +K LG T+F NA G+ + GHYT+ DMA++S +
Sbjct: 124 ASVALAEYISGSEEKFVEEMNKRAKELGAKNTNFKNASGLPEDGHYTSVYDMALISRELV 183
Query: 179 -TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+I + NTN + + GADG+KTG T + + + A+A +GD
Sbjct: 184 KHKNVFKYLTDKIDSVRNGKFSLANTNKLLWNYQGADGIKTGSTSEALYCLSATAKRGDT 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI------IKDFYQQNLSNEVPN 291
IAV+ GA D TR K ++ LL GF N +K + QQ+ N +
Sbjct: 244 RFIAVVFGAPDSATRFKEASKLLDYGFANFETKKVVEAGKVYGNIKVLKGQQDYVNAISQ 303
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
E + + E N + K ++ +I +K
Sbjct: 304 NDEYILLKKGESKNIKQIVSLNKYVDAPVKAGSEIGTVK 342
>gi|261855867|ref|YP_003263150.1| beta-lactamase [Halothiobacillus neapolitanus c2]
gi|261836336|gb|ACX96103.1| Beta-lactamase [Halothiobacillus neapolitanus c2]
Length = 425
Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 95/324 (29%), Positives = 141/324 (43%), Gaps = 4/324 (1%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ + A Y LLD NTG +I + D P PAS+TKLMT+Y+VFS LK
Sbjct: 67 VAMPVPGAPVLSARSYVLLDANTGQIIVQKNADEPVPPASITKLMTSYLVFSALKSGNIH 126
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ +TISK A E S + G +++ N L +IV+S ND A A+AE + E+ FV
Sbjct: 127 MDDMVTISKKAWEMQGSKMFIEVGKQVSVKNLLMGMIVQSGNDAATALAEYVGGNEQSFV 186
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQIKGLE 194
MN T+K LG++ TH+ + G GH +ARD++ L + FP Y +F+ K
Sbjct: 187 SLMNATAKKLGMTKTHYEDPTGWPADGHVMSARDISTLFNALVKHFPNYYHEFFRQKVFT 246
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
G K N + DG KTG T +GF + S Q LIAV+LG + RN
Sbjct: 247 WNGIKQYNREKLLFRDNWVDGGKTGHTEEAGFCLATSGQQNGMRLIAVVLGTESDDARNN 306
Query: 255 VSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+ +LL+ GF + + + +++VP ++
Sbjct: 307 EAEALLNYGFRFYENVPVRQAKQVLATPDVFKGAADQVPVGLDKDLVVLVTKDQAKNLSV 366
Query: 312 EAKDKESHFIDFEKITLLKNKITK 335
+ K
Sbjct: 367 SMTINPKLIAPLAVDQPVGKLEVK 390
>gi|268590416|ref|ZP_06124637.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM
1131]
gi|291314330|gb|EFE54783.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rettgeri DSM
1131]
Length = 403
Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 87/330 (26%), Positives = 144/330 (43%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + A Y L+D N+G V+AE+ D +PASLTK+MT+YV+ +K K
Sbjct: 32 TFPNTSIPAAPAIDAEAYILIDYNSGKVLAESNADQRRDPASLTKMMTSYVIGQAIKSGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ +A K G +++ + + ++S ND VA+A+ +
Sbjct: 92 IGENDIVTVGNDAWATGNPVFKGSSLMFLKPGDRVSVSQLTRGINLQSGNDACVAMADYI 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ FVQ MN LGL THF HG+ G Y++ARDMA++ + D P+
Sbjct: 152 AGDQANFVQLMNGYVNKLGLKNTHFQTVHGLDAEGQYSSARDMALIGQALVRDVPEEYAI 211
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N L DG+KTG T A+G+N+VASA +GD LI+V++G
Sbjct: 212 YKEKEFTFNNIRQTNRNGLLWDKSLTVDGIKTGHTNAAGYNLVASATEGDMRLISVVMGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKE 302
R+ S LL+ GF K + + + + + ++E++ T
Sbjct: 272 KSSKGRDAESKKLLTYGFRFYETVKPLQANVDFASVPVWFGDENEVKLGVTEDLYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + K +
Sbjct: 332 GRLKDLKASYELTTTELEAPLTKGQQVGTI 361
>gi|331682347|ref|ZP_08382966.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli H299]
gi|331079978|gb|EGI51157.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli H299]
Length = 403
Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 20 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 79
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 80 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 139
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 140 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 199
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 200 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 259
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 260 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 319
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 320 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 357
>gi|331656861|ref|ZP_08357823.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli TA206]
gi|331055109|gb|EGI27118.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli TA206]
Length = 392
Score = 213 bits (541), Expect = 3e-53, Method: Composition-based stats.
Identities = 99/342 (28%), Positives = 153/342 (44%), Gaps = 11/342 (3%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R + A + A + + L+D +G V+AE D +PASLTK+MT
Sbjct: 5 RVLHFLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMT 64
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKS 115
+YVV LK K LT +T+ K+A S K G +++ + K +I++S
Sbjct: 65 SYVVGQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQS 124
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND +A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L
Sbjct: 125 GNDACIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGK 184
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ D P+ + K + PN N + L DGMKTG T +G+N+VASA Q
Sbjct: 185 ALIHDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQ 244
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVP 290
GD LI+V+LGA R S LL+ GF I + + + + S
Sbjct: 245 GDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNL 304
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
E T N + + +K ++
Sbjct: 305 GAGEAGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 346
>gi|304316784|ref|YP_003851929.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778286|gb|ADL68845.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 381
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 102/341 (29%), Positives = 160/341 (46%), Gaps = 11/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFP----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++ + I + L + K L+D +TG V+ E PAS+
Sbjct: 2 LKKIISFILIFTLIYTIITEDIAYADNFDLKSKSAILMDASTGKVLYEKNSHEELPPASV 61
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MT +V L K T + S++A + + + G MT+D+ LK + + SA
Sbjct: 62 TKVMTMLLVMEALDSGKIKTTDKVVTSEHAFDMGGTQIYLEVGEEMTVDDLLKSVAMNSA 121
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND +VA+AE + +E+KFV+ MN +K LG T+F NA G+ + HYT+ D+A++S
Sbjct: 122 NDASVALAEYISGSEEKFVEEMNKRAKELGAKNTNFKNASGLPEKDHYTSVYDIALISRE 181
Query: 177 IK-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ +I + NTN + + GADG+KTG T + + + A+A +G
Sbjct: 182 LVKHKGIFKYLTDKIDSVRNGKFSLANTNKLLWRYQGADGIKTGSTSEALYCLSATAKRG 241
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI------IKDFYQQNLSNEV 289
D IAVI GA D NTR K ++ LL GF N +K + +Q+ N V
Sbjct: 242 DTRFIAVIFGAPDSNTRFKEASKLLDYGFANFETKKVVEAGKIYGTVKVLKGEQDYINAV 301
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
N E V + E N ++ K E+ KI +K
Sbjct: 302 ANTDEYVLLKKGEAKNIKQEIIINKYVEAPIKVGAKIGTIK 342
>gi|119477453|ref|ZP_01617644.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium
HTCC2143]
gi|119449379|gb|EAW30618.1| D-alanyl-D-alanine carboxypeptidase [marine gamma proteobacterium
HTCC2143]
Length = 384
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 92/348 (26%), Positives = 148/348 (42%), Gaps = 15/348 (4%)
Query: 1 MRQFLVIIAMAMLS----NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M ++L+I++ + + + Y L+D ++G VI E D PASL
Sbjct: 1 MHKYLIIVSSLFFAHWVAAAPAVIPAPPSIAASGYILIDADSGRVITEKNADEKLPPASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN-----STFKKGSTMTLDNALKLL 111
TKLMT+YV+ L E T +TIS+NA P+ + G + L + K +
Sbjct: 61 TKLMTSYVLSYELAEGNVANTDMVTISENAWAQNPTFAGSSLMWIEVGKQVNLKDLHKGV 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ S ND +VA+AE L +E F MN + LG++ +HF+NAHG+ HY TARD+A
Sbjct: 121 VISSGNDASVAVAEHLAGSESAFADVMNQHAALLGMTGSHFVNAHGLPDPEHYMTARDLA 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
ILS +P+ + N N + DG+KTG T +GF +V+S
Sbjct: 181 ILSK-AILKYPEEYALYSQPDYTYNNITQTNRNRLLWKDDSVDGLKTGHTEEAGFCLVSS 239
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSN 287
A + LI+V++GA ++ R S LLS GF + + + +
Sbjct: 240 AKRNGMRLISVVMGAKSQSAREVESQKLLSYGFRYFETHQLYSTGDALTATKIWAGAGDS 299
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ ++ T + E + +
Sbjct: 300 LSLGVERDIHLTIPRG-KHKDIEAVMDLAEFIKAPVSAGNEYGELVIR 346
>gi|194367218|ref|YP_002029828.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas
maltophilia R551-3]
gi|194350022|gb|ACF53145.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas
maltophilia R551-3]
Length = 406
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 155/320 (48%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A + PAS+TK+MT+YV+ + +K K + +S+ A
Sbjct: 54 SKAWVLMDYATGQVLAGENINEQLAPASITKVMTSYVIAAEVKNGKVRPDDQVMMSERAW 113
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 114 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 173
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ +HF+NAHG+ GH+++A D+A+L + D+P+ Y +IK ++ K PN
Sbjct: 174 AKIGMKNSHFVNAHGLTAPGHHSSAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPN 233
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ L+AV+LG R S +LL+
Sbjct: 234 RNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLVAVVLGGQSEKQRADDSLALLNW 293
Query: 263 GFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + + K
Sbjct: 294 GFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTL 353
Query: 317 ESHFIDFEKITLLKNKITKK 336
E+ F ++I +K + K
Sbjct: 354 EAPFTAGQQIGTVKVMLDGK 373
>gi|197284323|ref|YP_002150195.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis
HI4320]
gi|227358533|ref|ZP_03842858.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis
ATCC 29906]
gi|194681810|emb|CAR41057.1| putative penicillin-binding protein [Proteus mirabilis HI4320]
gi|227161244|gb|EEI46318.1| D-alanyl-D-alanine carboxypeptidase fraction A [Proteus mirabilis
ATCC 29906]
Length = 403
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 88/349 (25%), Positives = 147/349 (42%), Gaps = 18/349 (5%)
Query: 2 RQFLVIIAMAMLS-------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R F + +S + + + Y L+D N+G V+AE D +PA
Sbjct: 13 RLFSATFILLAISHHAIADDTLKTMIPAVPNIEAESYILIDYNSGKVLAEKNADVRRDPA 72
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTK+MT+YV+ ++ K + I + A K G +T+
Sbjct: 73 SLTKMMTSYVIGQAIRAGKISNNDIVPIGEEAWATGNPVFRGSSLMFLKPGDKVTVSQLT 132
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ + ++S ND VA+A + ++ FV MN+ K LGL T F HG+ G Y++AR
Sbjct: 133 RGINLQSGNDACVAMASYVAGSQDTFVTMMNDYVKRLGLQNTQFQTVHGLDAPGQYSSAR 192
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
DMA++ + D P+ ++ K + N N T L DG+KTG T A+G+N
Sbjct: 193 DMALIGAALIRDVPEEYAIYKEKEFTYNNIRQTNRNGLLWDTSLNVDGIKTGHTEAAGYN 252
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQ 283
+VASA +G+ LI+ ++G R+ S LL+ GF K + + +
Sbjct: 253 LVASATEGNMRLISAVMGGHSSKGRDAESKKLLTWGFRFFETVKPLQVGKEFAAEPIWYG 312
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++V T + + D K ++
Sbjct: 313 DTDKVQLGVDKDVYLTIPRGRLKDLKASYVLDNVELHAPVSKNQVVGTI 361
>gi|229111549|ref|ZP_04241100.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock1-15]
gi|228671931|gb|EEL27224.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock1-15]
Length = 385
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEEVEKGKLKLTDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F +K K Q + + S+ V K+ N + +E +
Sbjct: 270 DYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 330 KKVKAPIKKGDALGTLVIKK 349
>gi|218557743|ref|YP_002390656.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
S88]
gi|218364512|emb|CAR02194.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli S88]
gi|294493575|gb|ADE92331.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli IHE3034]
gi|307627752|gb|ADN72056.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
UM146]
Length = 400
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 98/338 (28%), Positives = 152/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A S K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 317 AGSVTIPRGQLKNLKASYTLMEPQLTAPLKKGQVVGTI 354
>gi|71905933|ref|YP_283520.1| penicillin-binding protein 6 [Dechloromonas aromatica RCB]
gi|71845554|gb|AAZ45050.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Dechloromonas aromatica RCB]
Length = 391
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 84/343 (24%), Positives = 156/343 (45%), Gaps = 8/343 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF-LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ +++++ L + + LL+ + V+ D PASLTKLM
Sbjct: 18 KTAFILLSIVTAGQAMAQQLPVPPALAAKSWLLLEVGSNQVLTAEKSDERLEPASLTKLM 77
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAY+ F+ +++K L+ + +S+ A S + + + +++ +K +IV+S ND
Sbjct: 78 TAYLTFAAIRQKTIGLSQTLPVSEKAWRTGGSKMFVRVDTQVPVEDLIKGMIVQSGNDAC 137
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
V +AE + +E+ F Q MN ++ LG++ +HF+N+ G+ HYTTARD+++L+ + D
Sbjct: 138 VTLAEGIAGSEENFAQMMNREAQRLGMTNSHFINSTGLPDPQHYTTARDLSLLASALIRD 197
Query: 181 FPQYM-HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
FP+ Y+ +K PN N + DG+KTG T A+G+ +++SA++ + L
Sbjct: 198 FPEDYKKYYSMKEFRYNNITQPNRNRLLFIDPTVDGVKTGHTEAAGYCLISSALRDKRRL 257
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE----- 294
++V+LG + R S LL+ GF + + +
Sbjct: 258 LSVVLGTTSDSARATESQKLLNWGFISYDSVALFAKDQAVATLRVWKGAQSEVKAGFTSD 317
Query: 295 -EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + + + +KI LK I K
Sbjct: 318 LGIAVPKGYADKVKSDFIAEPRLIAPVEAGQKIGTLKVSIDGK 360
>gi|332282314|ref|ZP_08394727.1| penicillin-binding protein 6 [Shigella sp. D9]
gi|332104666|gb|EGJ08012.1| penicillin-binding protein 6 [Shigella sp. D9]
Length = 407
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 98/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 24 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 83
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A S K G +++ + K +I++S ND
Sbjct: 84 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 143
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL T F HG+ G ++TARDMA+L +
Sbjct: 144 CIALADYVAGSQESFIGLMNGYAKKLGLINTTFQTVHGLDAPGQFSTARDMALLGKALIH 203
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 204 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 263
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 264 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 323
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 324 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 361
>gi|315135488|dbj|BAJ42647.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
DH1]
Length = 403
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 20 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 79
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 80 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 139
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 140 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 199
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 200 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 259
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 260 LISVVLGAKTDRFRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 319
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 320 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 357
>gi|261251421|ref|ZP_05943995.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891]
gi|260938294|gb|EEX94282.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891]
Length = 388
Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats.
Identities = 98/340 (28%), Positives = 145/340 (42%), Gaps = 10/340 (2%)
Query: 4 FLVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
L I+++ P + Y L+D +TG V+ + + NPASLTKLMTA
Sbjct: 11 LLSTISLSFGVTAAPTIIPDPPALGAKGYILMDYHTGEVLVQKNSEKKLNPASLTKLMTA 70
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV + L + IS+NA S + G+ + L + + LIV+S ND
Sbjct: 71 YVAGQEVNSGNIALDDQVRISRNAWAKNFPDSSKMFIEVGTDVQLMDLYRGLIVQSGNDA 130
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+VAIAE + +E FV MN+ S+ LGL+ T + N HG+ G Y+T D+A+LS I
Sbjct: 131 SVAIAEHVAGSEDAFVSLMNSWSQKLGLANTSYTNPHGLDSDGLYSTPYDIALLSQAIIR 190
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P + G N N L DGMKTG+T +G+++ SA GD
Sbjct: 191 DLPDIYPLYSETAYTYNGITQYNRNGLLRDRSLNVDGMKTGYTSGAGYSLATSATSGDMR 250
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
LI+V++G+ +R S LLS GF + + + E
Sbjct: 251 LISVVMGSSSAKSRESESKQLLSYGFRFFDTIAPTKPTDTLAEARVWMGETDHVAAGVDE 310
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
V T + N + E + K + I
Sbjct: 311 TVLLTLPKGD-ANKLIAEVEFTGELTAPIRKGDPIGKVIY 349
>gi|167628449|ref|YP_001678948.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum
Ice1]
gi|167591189|gb|ABZ82937.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum
Ice1]
Length = 386
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 82/337 (24%), Positives = 142/337 (42%), Gaps = 7/337 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+V +A L + + + + L+D TG ++ E PAS+TKLMT V
Sbjct: 12 MVFFFLASLIPVQAWAAPPLETQADSAVLMDPTTGAILFEKNSHKRVAPASVTKLMTLLV 71
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F +++ KA L + S+ A E S + G M + + L + V SAND VA+A
Sbjct: 72 AFEAIEQGKASLDDKVVTSQRAFEMGGSQIYLEPGEEMVMRDLLISIAVHSANDACVAVA 131
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + + + +V MN +++LGL THFMN HG+ HYT+A DMA+++
Sbjct: 132 EHISGSYEAYVDDMNKKAQSLGLKDTHFMNPHGLPVDNHYTSAHDMAVIAREALKHPTLM 191
Query: 185 M----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ +I+ K + N N + + G DG KTG+T + + +V++ + + LI
Sbjct: 192 QFVAIKHHKIRESSSKPMQLDNHNRLLWWYPGTDGFKTGWTSEAKYCLVSTVERDNLRLI 251
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVC 297
A + G + K S L + GF T + + + V +++
Sbjct: 252 ASVFGVPEIRGHFKESMKLYNYGFSRYTFKSVAKPGEPLGEVAVGKGRKERVQVVAQGKP 311
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
E + + + L + +
Sbjct: 312 GLIVERGKEKGIESRVELEPYATAPIAQGQKLGDLVI 348
>gi|212709668|ref|ZP_03317796.1| hypothetical protein PROVALCAL_00715 [Providencia alcalifaciens DSM
30120]
gi|212687479|gb|EEB47007.1| hypothetical protein PROVALCAL_00715 [Providencia alcalifaciens DSM
30120]
Length = 401
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 93/339 (27%), Positives = 151/339 (44%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L + + S +A + L+D N+G ++A + PD +PASLTK+MT+YV
Sbjct: 17 LSLFVVMSASVYAAQTPVAPQVDAKAFVLMDYNSGKILASSNPDERLDPASLTKIMTSYV 76
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAND 118
V +K K +T+S+ A K +++ + K ++++S ND
Sbjct: 77 VGQAVKAGKITPQDMVTVSEAAWATGNPILKGSSLMFLKPKDRVSVLDLNKGVVIQSGND 136
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
++A+AE + +++ FV MN + +GL+ THF HG+ G Y+TARDMA+L+ +
Sbjct: 137 ASIALAEHVAGSQESFVDLMNGYVQKIGLTNTHFKTVHGLDSDGQYSTARDMAVLAQALI 196
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N L DG+KTG T +G N+VASA G
Sbjct: 197 RDVPDEYVLHKEKEFTFNNIRQPNRNRLLWSQNLKVDGVKTGHTSGAGHNLVASATDGPM 256
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + ++S +
Sbjct: 257 RLISVVLGAPSDRVRFAESEKLLTWGFRFFETVTPIKGDAVLQKQRVWFGDISEVPLGVE 316
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+V T + N ++ D +S +
Sbjct: 317 NDVAVTIPKGQLQNLKVDIKLDNDSLEAPLALNQKVGTI 355
>gi|312622222|ref|YP_004023835.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202689|gb|ADQ46016.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 386
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 84/313 (26%), Positives = 139/313 (44%), Gaps = 6/313 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D +TG ++ E PAS+TK+MT ++ +++ K L+ + S+
Sbjct: 38 EISAKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGKIKLSDKVVASQ 97
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NAS S K+ MT++ LK + + SAND VA+AE + + ++FV MN +K
Sbjct: 98 NASSLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKE 157
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK-TDFPQYMHYFQIKGLEIKGKKYPNT 203
G+ T+F+N +G+ HYT+A D+AI+S + + + + NT
Sbjct: 158 FGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNT 217
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
N V + G G+KTG T + F + ASA++ LIAVI+GA D TR + LL G
Sbjct: 218 NKLVRFYRGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNEATKLLDWG 277
Query: 264 FYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
F N + + +S +V K+ + K A ++
Sbjct: 278 FANFSMYSPYSKGYCFGKVKVKNGIEKEVEAVLSTDVKLIVKKGDESTVESKVALPQQ-I 336
Query: 320 FIDFEKITLLKNK 332
+ +
Sbjct: 337 SAPVKTGQKIGKL 349
>gi|238920432|ref|YP_002933947.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri
93-146]
gi|238870001|gb|ACR69712.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri
93-146]
Length = 450
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 86/344 (25%), Positives = 144/344 (41%), Gaps = 12/344 (3%)
Query: 1 MRQFLVIIAMAMLSNIF-PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+R+ + ++++++ Y LLD ++G V+ E D +PASLTK+
Sbjct: 61 IRRLTLGASLSLVALPLQAADPAPPQVNAKAYILLDYDSGRVLTEGNADERLDPASLTKI 120
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIV 113
M +YV+ LK K + + K+A S K G + + + +++
Sbjct: 121 MASYVIGQALKSGKIAPGDMVVVGKDAWATGNPLLRGSSLMFLKPGDRVPVAELNRGVVI 180
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND ++A+A+ + ++ FV MN GL THF HG+ G Y++ARDMA++
Sbjct: 181 QSGNDASIALADHVAGSQDTFVNLMNQYVSAWGLKNTHFQTVHGLDSEGQYSSARDMALI 240
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASA 232
S R+ D P + K + N N + L DG+KTGFT +G N+VASA
Sbjct: 241 SQRLIADVPDEYQLNKEKEFTFNKIRQINRNRLLWDSSLNVDGVKTGFTSGAGHNLVASA 300
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNE 288
I G LI+V+LGA R S LL+ GF + + +
Sbjct: 301 IDGPMRLISVVLGAPTDRVRFDESKKLLTWGFRFYETVTPLKVGQPFTTQKVWYGERREV 360
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + T + + + +K +
Sbjct: 361 PLGVDKSASVTIPRGQMKDLKASYTLTQSQLEAPLKKGQAVGTI 404
>gi|26246814|ref|NP_752854.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
CFT073]
gi|227884197|ref|ZP_04002002.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
83972]
gi|261258542|ref|ZP_05951075.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O157:H7 str. FRIK966]
gi|293409214|ref|ZP_06652790.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
B354]
gi|300817100|ref|ZP_07097319.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
107-1]
gi|300823980|ref|ZP_07104102.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
119-7]
gi|300895754|ref|ZP_07114347.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
198-1]
gi|300907171|ref|ZP_07124834.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
gi|300924447|ref|ZP_07140417.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
182-1]
gi|300939883|ref|ZP_07154518.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
gi|300991867|ref|ZP_07179692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
200-1]
gi|300993443|ref|ZP_07180385.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
gi|301020649|ref|ZP_07184722.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
gi|301051233|ref|ZP_07198062.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
185-1]
gi|301303598|ref|ZP_07209720.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
124-1]
gi|301325847|ref|ZP_07219280.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
gi|309795413|ref|ZP_07689831.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
145-7]
gi|331646058|ref|ZP_08347161.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli M605]
gi|331651852|ref|ZP_08352871.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli M718]
gi|331676578|ref|ZP_08377274.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli H591]
gi|26107214|gb|AAN79397.1|AE016758_1 Penicillin-binding protein 6 precursor [Escherichia coli CFT073]
gi|227838949|gb|EEJ49415.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
83972]
gi|291469682|gb|EFF12166.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
B354]
gi|300297140|gb|EFJ53525.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
185-1]
gi|300305477|gb|EFJ59997.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
200-1]
gi|300360328|gb|EFJ76198.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
198-1]
gi|300398577|gb|EFJ82115.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
gi|300401046|gb|EFJ84584.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
gi|300406557|gb|EFJ90095.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
gi|300419332|gb|EFK02643.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
182-1]
gi|300455265|gb|EFK18758.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
gi|300523491|gb|EFK44560.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
119-7]
gi|300530452|gb|EFK51514.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
107-1]
gi|300841097|gb|EFK68857.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
124-1]
gi|300847361|gb|EFK75121.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
gi|308121063|gb|EFO58325.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
145-7]
gi|315257828|gb|EFU37796.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1]
gi|315292514|gb|EFU51866.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
153-1]
gi|315299413|gb|EFU58665.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3]
gi|323947137|gb|EGB43148.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120]
gi|323967274|gb|EGB62697.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863]
gi|323969597|gb|EGB64885.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007]
gi|324009727|gb|EGB78946.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2]
gi|324013062|gb|EGB82281.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1]
gi|324015963|gb|EGB85182.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
117-3]
gi|324116152|gb|EGC10075.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167]
gi|331044810|gb|EGI16937.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli M605]
gi|331050130|gb|EGI22188.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli M718]
gi|331075267|gb|EGI46565.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli H591]
Length = 407
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 98/338 (28%), Positives = 152/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 24 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 83
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A S K G +++ + K +I++S ND
Sbjct: 84 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 143
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 144 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 203
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 204 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 263
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 264 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 323
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 324 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 361
>gi|261343559|ref|ZP_05971204.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii
DSM 4541]
gi|282568708|gb|EFB74243.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii
DSM 4541]
Length = 403
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 88/330 (26%), Positives = 146/330 (44%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + A T Y L+D N+G V+AE+ D +PASLTK+MT+YV+ +K K
Sbjct: 32 AFPNTSIPAAPTIDAEAYILIDYNSGKVLAESNADQRRDPASLTKMMTSYVIGQAIKSGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ ++A K G +++ + + ++S ND VA+A+ +
Sbjct: 92 IGANDMVTVGEDAWATGNPIFKGSSLMFLKPGDRVSVSQLTRGINLQSGNDACVAMADHV 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ FV MNN LGL THF HG+ G Y++ARDMA++ + D P+
Sbjct: 152 AGDQSSFVNLMNNYVSKLGLQNTHFQTVHGLDAEGQYSSARDMALIGQALIRDVPEEYEI 211
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N L DG+KTG T A+G+N+VASA GD LI+V++G
Sbjct: 212 YKEKEFTFNNIRQTNRNGLLWDKSLAVDGIKTGHTDAAGYNLVASAKDGDMRLISVVMGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKE 302
R+ S LL+ GF K + ++ + + S + +++ T
Sbjct: 272 KSSKGRDAESKKLLTYGFRFYETVKPLQAGVEFATTPVWFGDDSEVKLGVVDDLYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + +K +
Sbjct: 332 GRLKDLKASYELTSTEIEAPLKKGQQVGVI 361
>gi|307265140|ref|ZP_07546699.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306919762|gb|EFN49977.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 381
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 11/346 (3%)
Query: 2 RQFLVIIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
++ L ++ +L+ F + K L++ NTG ++ E +P PAS+T
Sbjct: 3 KRLLTLLVSVILAISFVLNGTVYADTLNLKSKSAILIEANTGQILYEKDSHNPLPPASVT 62
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT + + K +T + SK+A + + + G MT+D+ +K + + SAN
Sbjct: 63 KVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSAN 122
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D +VA+AE + TE+ FV+ MN +K LG T F NA G+ + GH T+ D+A++S +
Sbjct: 123 DASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMISREL 182
Query: 178 K-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+ ++ L NTN + + GADG+KTG T + + + A+A +GD
Sbjct: 183 VKHESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGADGIKTGSTSEALYCMAATAKRGD 242
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS--- 293
LIAV+ GA D TR +A LL GF N K + + + +S
Sbjct: 243 TRLIAVVFGAPDSETRFSEAAKLLDYGFANYESVKVASKGQSFGNVKVFKGKKQAVSVVC 302
Query: 294 ---EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
E + + E N T+++ + I +K K
Sbjct: 303 RDDEYILIKKGEGKNIKTEVELKNAVLAPLAKEVPIGTVKITQDGK 348
>gi|320177827|gb|EFW52813.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905]
gi|332088903|gb|EGI94015.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 5216-82]
Length = 400
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 96/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDARATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DG+KTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGIKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 317 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 354
>gi|320186097|gb|EFW60841.1| D-alanyl-D-alanine carboxypeptidase [Shigella flexneri CDC 796-83]
Length = 403
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 98/338 (28%), Positives = 152/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 20 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 79
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A S K G +++ + K +I++S ND
Sbjct: 80 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKDVIIQSGNDA 139
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 140 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 199
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 200 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 259
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 260 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 319
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 320 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 357
>gi|228902586|ref|ZP_04066737.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis IBL 4222]
gi|228857027|gb|EEN01536.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis IBL 4222]
Length = 385
Score = 212 bits (540), Expect = 4e-53, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAQKNGMRVISVVMGAPTSKERNNEVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F +K K Q + I S+ V K+ + + +E +
Sbjct: 270 DYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKIDLVASDNVSLLMKKGESMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 330 KKVKAPIKKGDALGTLVIKK 349
>gi|147677558|ref|YP_001211773.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
thermopropionicum SI]
gi|146273655|dbj|BAF59404.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
thermopropionicum SI]
Length = 392
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 85/322 (26%), Positives = 140/322 (43%), Gaps = 6/322 (1%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ A LL+ TG +I E P AS+TKLMT + + E K LT
Sbjct: 39 VPAALETTAESAILLEPATGKIIYEKEPHKRLPMASVTKLMTLLLAVEAVDEGKFKLTDR 98
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ S+NA E S + G M+L + L + ++SAND +VA+AE + +E+ FVQ MN
Sbjct: 99 VVASENAWEMGGSQIYLEPGEEMSLWDLLLAIGLQSANDASVAVAEHIAGSEEAFVQAMN 158
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-PQYMHYFQIKGLEIKGK 198
+++LGL+ T+F+N HG+ HYT+A DMA++ + + + L
Sbjct: 159 EKARSLGLNNTNFVNCHGLTADNHYTSAHDMAMILKEGLKSPLFRKISAMKEYELRGGAF 218
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
K NTN + + GAD KTG+T A+ + + +SA + LI V+LG + + + S
Sbjct: 219 KLWNTNKLLWWYDGADAGKTGWTEAAKYCLASSAERDGLRLICVVLGTPEPQSHFRESTK 278
Query: 259 LLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
L GF + + +E+V + + +
Sbjct: 279 LFDYGFARYKAVNLAPAGEVAGTVRVGKGKAGSVKALTAEKVAVVVPKGED-KGFESRVE 337
Query: 315 DKESHFIDFEKITLLKNKITKK 336
+K + + + K
Sbjct: 338 LPGYIEAPVQKGQEIGSYVVTK 359
>gi|170681795|ref|YP_001742946.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
SMS-3-5]
gi|187776239|ref|ZP_02801387.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4196]
gi|188024947|ref|ZP_02775045.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4113]
gi|189010000|ref|ZP_02804398.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4076]
gi|189402327|ref|ZP_02781640.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4401]
gi|189402936|ref|ZP_02792356.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4486]
gi|189404286|ref|ZP_02788318.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4501]
gi|189404921|ref|ZP_02812067.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC869]
gi|189405883|ref|ZP_02824886.2| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC508]
gi|191166209|ref|ZP_03028043.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
gi|191173711|ref|ZP_03035234.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
gi|193064478|ref|ZP_03045559.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
gi|193069405|ref|ZP_03050360.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
gi|194428152|ref|ZP_03060695.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171]
gi|208814959|ref|ZP_03256138.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4045]
gi|208822498|ref|ZP_03262817.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4042]
gi|209400303|ref|YP_002269508.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4115]
gi|217324128|ref|ZP_03440212.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. TW14588]
gi|291281838|ref|YP_003498656.1| Penicillin-binding protein 6 [Escherichia coli O55:H7 str. CB9615]
gi|293404143|ref|ZP_06648137.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
FVEC1412]
gi|293414116|ref|ZP_06656765.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
B185]
gi|298379925|ref|ZP_06989530.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
FVEC1302]
gi|331662200|ref|ZP_08363123.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli TA143]
gi|331667211|ref|ZP_08368076.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli TA271]
gi|170519513|gb|ACB17691.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5]
gi|187768212|gb|EDU32056.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4196]
gi|188015679|gb|EDU53801.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4113]
gi|189002710|gb|EDU71696.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4076]
gi|189356271|gb|EDU74690.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4401]
gi|189363476|gb|EDU81895.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4486]
gi|189366544|gb|EDU84960.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4501]
gi|189373161|gb|EDU91577.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC869]
gi|189377784|gb|EDU96200.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC508]
gi|190903818|gb|EDV63533.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
gi|190905961|gb|EDV65577.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
gi|192928940|gb|EDV82553.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
gi|192957358|gb|EDV87806.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
gi|194413712|gb|EDX29991.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171]
gi|208731607|gb|EDZ80295.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4045]
gi|208737983|gb|EDZ85666.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4042]
gi|209161703|gb|ACI39136.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4115]
gi|217320349|gb|EEC28773.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. TW14588]
gi|290761711|gb|ADD55672.1| Penicillin-binding protein 6 [Escherichia coli O55:H7 str. CB9615]
gi|291428729|gb|EFF01754.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
FVEC1412]
gi|291434174|gb|EFF07147.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
B185]
gi|298279623|gb|EFI21131.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
FVEC1302]
gi|320192682|gb|EFW67323.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
EC1212]
gi|320196666|gb|EFW71289.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327]
gi|320199030|gb|EFW73627.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B]
gi|326338272|gb|EGD62101.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
1125]
gi|326346249|gb|EGD69987.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
1044]
gi|330910581|gb|EGH39091.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86]
gi|331060622|gb|EGI32586.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli TA143]
gi|331065567|gb|EGI37460.1| D-alanyl-D-alanine carboxypeptidase DacC (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6)
(PBP-6) [Escherichia coli TA271]
Length = 403
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 98/338 (28%), Positives = 152/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 20 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 79
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A S K G +++ + K +I++S ND
Sbjct: 80 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 139
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 140 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 199
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 200 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 259
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 260 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 319
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 320 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 357
>gi|229075784|ref|ZP_04208761.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock4-18]
gi|229098546|ref|ZP_04229487.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock3-29]
gi|229117572|ref|ZP_04246944.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock1-3]
gi|228665892|gb|EEL21362.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock1-3]
gi|228684868|gb|EEL38805.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock3-29]
gi|228707336|gb|EEL59532.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock4-18]
Length = 385
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 87/325 (26%), Positives = 146/325 (44%), Gaps = 8/325 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K L
Sbjct: 25 TAPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDK 84
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ S++A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN
Sbjct: 85 VRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMN 144
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEI 195
+K+LGL THF N G+ HY+TA DMAI+ + ++
Sbjct: 145 KKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDYLREDTD 204
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN
Sbjct: 205 KKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQ 264
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMK 311
LL F +K K Q + + S+ V K+ N + +
Sbjct: 265 VTKLLDYAFGQYMTKKMYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQ 324
Query: 312 EAKDKESHFIDFEKITLLKNKITKK 336
E ++ +K L + KK
Sbjct: 325 EVIAEKKVKAPIKKGDALGTLVIKK 349
>gi|332091086|gb|EGI96176.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
155-74]
Length = 400
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 96/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDARATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DG+KTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGIKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 317 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 354
>gi|156934665|ref|YP_001438581.1| D-alanyl-D-alanine carboxypeptidase fraction C [Cronobacter
sakazakii ATCC BAA-894]
gi|156532919|gb|ABU77745.1| hypothetical protein ESA_02500 [Cronobacter sakazakii ATCC BAA-894]
Length = 410
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 98/339 (28%), Positives = 154/339 (45%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++I+++ P A + L+D ++G V+AE D +PASLTKLMT+YV
Sbjct: 26 FLLISLSTAHAADPIAPAAPDVDARAWILMDYHSGKVLAEGNADEKLDPASLTKLMTSYV 85
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAND 118
V LK K L +T+ K+A K G +++ + K +I++S ND
Sbjct: 86 VGQALKAGKIHLDDKVTVGKDAWATGNPALRGSSLMFLKPGDQVSVADLNKGVIIQSGND 145
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
++AIA+ + ++ FV MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 146 ASIAIADYVAGSQDAFVSLMNGYAKRLGLTNTTFKTVHGLDAPGQFSTARDMALLGKALI 205
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N + + DGMKTG T +G+N+VASA QGD
Sbjct: 206 HDVPDEYAIHKEKEFTFNKIRQPNRNRLLWSSSMNVDGMKTGTTAGAGYNLVASATQGDM 265
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNIS 293
LI+V+LGA R + S LL+ GF I + + + S
Sbjct: 266 RLISVVLGAKTDGIRFRESEKLLTWGFRFFETVTPIKPDAAFVNQRVWFGDSSEVKLGAG 325
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
E T + N + + ++ ++
Sbjct: 326 EAGSVTIPKGQLKNLKATYTLNSPQLTAPLKQGQVVGTI 364
>gi|297544591|ref|YP_003676893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842366|gb|ADH60882.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 381
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 93/348 (26%), Positives = 155/348 (44%), Gaps = 12/348 (3%)
Query: 1 MRQFLVIIAMAMLSNIF-----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M + ++ + ++M+ I + K L++ NTG ++ E P PAS
Sbjct: 1 MSKKILTLLVSMIIAISFILDVTVYADTLNLKAKSAILMEANTGQILYEKDSHKPLPPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MT + + K +T + SK+A + + + G MT+D+ +K + + S
Sbjct: 61 VTKVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEIGEEMTVDDLMKAIAMNS 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND +VA+AE + TE+ FV+ MN +K LG T F NA G+ GH T+ D+A++S
Sbjct: 121 ANDASVALAEYIAGTEENFVEIMNKRAKELGAKNTTFKNATGLPDEGHLTSVYDIAMISR 180
Query: 176 RIK-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + ++ L NTN + + G DG+KTG T + + + A+A +
Sbjct: 181 ELVKHESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKR 240
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPN 291
D LIAV+ GA D TR +A LL GF N K + + V
Sbjct: 241 ADTRLIAVVFGAPDSETRFSETAKLLDYGFANYESVKIASKGQSFGNVKVLKGKKETVSG 300
Query: 292 I---SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ E + + E N T+++ + I +K K
Sbjct: 301 VCHDDEYILIKKGEGKNIKTEVELKNAVLAPLAKEVPIGTVKITQDGK 348
>gi|91209873|ref|YP_539859.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
UTI89]
gi|117623019|ref|YP_851932.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
APEC O1]
gi|237707198|ref|ZP_04537679.1| penicillin-binding protein 6 [Escherichia sp. 3_2_53FAA]
gi|91071447|gb|ABE06328.1| penicillin-binding protein 6 precursor [Escherichia coli UTI89]
gi|115512143|gb|ABJ00218.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
[Escherichia coli APEC O1]
gi|226898408|gb|EEH84667.1| penicillin-binding protein 6 [Escherichia sp. 3_2_53FAA]
gi|315287329|gb|EFU46740.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
110-3]
gi|323953500|gb|EGB49366.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252]
gi|323958128|gb|EGB53837.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263]
Length = 407
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 98/338 (28%), Positives = 152/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 24 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 83
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A S K G +++ + K +I++S ND
Sbjct: 84 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 143
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 144 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 203
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 204 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 263
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 264 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 323
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 324 AGSVTIPRGQLKNLKASYTLMEPQLTAPLKKGQVVGTI 361
>gi|89899727|ref|YP_522198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens
T118]
gi|89344464|gb|ABD68667.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Rhodoferax ferrireducens T118]
Length = 414
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 146/325 (44%), Gaps = 4/325 (1%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L+ + L+D ++G V+A PD P PASLTK+MT+Y+V L+
Sbjct: 52 LAAQTTLAGSPPALPAKAWLLMDFDSGEVLASANPDEPLPPASLTKMMTSYLVEQALRSG 111
Query: 73 KAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K T +++S+NA S S T+ + L+ +I++S ND + AIAE +
Sbjct: 112 KLKQTDLVSVSQNAWCRGSSTESCMYLPLNSQATVIDILRGIIIQSGNDASKAIAEHMAG 171
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+E+ F + MN + LG++ THF+N G+ H ++ARD+AIL+ I D Y +
Sbjct: 172 SEEGFAKLMNAEALRLGMTHTHFVNPTGLPDPAHKSSARDLAILARAIIHDSVDYYPIYA 231
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ + G K N N + T DG+KTG T +G+ +V S+ + LI VIL
Sbjct: 232 EREFKYNGIKQGNRNALLYTDPTVDGLKTGHTEDAGYCLVTSSKRNGMRLITVILNTHSA 291
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
R + +LL GF + I + + ++ + + Q
Sbjct: 292 QARADETRTLLGWGFSSFEKATPIQPNTVVTTAKVSFGKADTVAAGLGAPWMLTVPRGQQ 351
Query: 310 MKE-AKDKESHFIDFEKITLLKNKI 333
++ + K K +++ +
Sbjct: 352 VQTSVELKSGLEAPVTKGSVIGKVV 376
>gi|89895051|ref|YP_518538.1| hypothetical protein DSY2305 [Desulfitobacterium hafniense Y51]
gi|219669462|ref|YP_002459897.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
hafniense DCB-2]
gi|89334499|dbj|BAE84094.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539722|gb|ACL21461.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
hafniense DCB-2]
Length = 380
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 86/341 (25%), Positives = 145/341 (42%), Gaps = 12/341 (3%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR+ F + + + L+ + L+D +G ++ E PAS
Sbjct: 1 MRKTLSWVFALALFIGNLAVPHQAYGAVLETEAASAILMDAKSGQILFEKEIHKELPPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TKLMT V ++ + LT +T S+ AS S + G T +L+ L + V S
Sbjct: 61 VTKLMTLLVAAEAVESGRVSLTDKVTASEGASSLGGSQIYLEPGETFSLEEMLISIAVGS 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+ E + T + FV+ MN +K +G + THF+NA+G+ GHYT+A D+A++
Sbjct: 121 ANDACYAVGEHISGTHEAFVEEMNKKAKEIGANHTHFVNAYGLPAQGHYTSAYDLALMGR 180
Query: 176 RIKTDF-PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + + L K NTN + + GADG KTG+T + + + ++ +
Sbjct: 181 EALKYPLVRKLTNMKEYDLRGGKFKLWNTNKLLWWYEGADGFKTGWTSEANYCLASTVER 240
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN------E 288
LIAV++G S L + GF N ++ K +
Sbjct: 241 DGLRLIAVVMGVPQVRGHFTESMKLYNYGFANYAYKEYAPVGQKQGVIKVRKGMEEDLVA 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V + V + N + K D E+ +K+ +
Sbjct: 301 VTEKALGVTVPKGSDKNIWAETKLNPDVEAPVKAGQKVGEI 341
>gi|260773924|ref|ZP_05882839.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP
69.14]
gi|260610885|gb|EEX36089.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP
69.14]
Length = 388
Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats.
Identities = 94/351 (26%), Positives = 144/351 (41%), Gaps = 17/351 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+ I+ A + P + Y L+D +TG V+ E+ + N
Sbjct: 1 MKNIKSIVVSATCLSFIPLVSDATPIVVPNPPQLSAKGYVLMDYHTGTVLVEHNAHNKLN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALK 109
PASLTKLMT+YV +K + IS+ A S + G+ + + + +
Sbjct: 61 PASLTKLMTSYVAGQEMKRGNISPDDQVVISQRAWARNFPDSSKMFIEVGTKVNMMDLYR 120
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
LIV+S ND +VAIAE + +E FV MN+ + LGL+ T F N HG+ G Y+T D
Sbjct: 121 GLIVQSGNDASVAIAEHVAGSENAFVDLMNSWAATLGLTNTAFTNPHGLDSSGLYSTPYD 180
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNI 228
+A L+ I D P+ + G N N + DGMKTGFT +GF++
Sbjct: 181 IAKLAQAIIRDLPEIYPLYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGFSL 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQN 284
SA G+ LI+V++G+ R S LLS GF +
Sbjct: 241 TTSATNGNMRLISVVMGSNSAKGREADSKQLLSYGFRFFETIAPHQAGEPIEQARVWMGK 300
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++E T + +K +K ++ I +
Sbjct: 301 KDQLPVGVAETTYLTVVKGELPKLSGLIEMNK-DLQAPIQKGDIVGKVIYQ 350
>gi|254516725|ref|ZP_05128784.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[gamma proteobacterium NOR5-3]
gi|219675148|gb|EED31515.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[gamma proteobacterium NOR5-3]
Length = 379
Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats.
Identities = 83/337 (24%), Positives = 145/337 (43%), Gaps = 10/337 (2%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ + S + Y L+D N+G V+ E+ D PASLTKLMTA+V+
Sbjct: 3 LATFSGASTAQNIVPAPPAVAARAYLLVDANSGAVLVESNADEQLPPASLTKLMTAFVLA 62
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSN-----STFKKGSTMTLDNALKLLIVKSANDIAV 121
S + + +T+S+NA P + +T+ + +++ S ND V
Sbjct: 63 SEIDAGRLSRDDQVTVSRNAWSQNPVFNGSSLMWIEPRMPVTIGQLEQGIVISSGNDATV 122
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+AE + +E F MN + LG+ ++F N+HG+ H TARD+A L+ I T F
Sbjct: 123 AVAEHIAGSETAFADLMNKHAAELGMHGSYFANSHGLPHPQHLMTARDLATLAKAIITRF 182
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P++ + + + N N +G DG+KTG+T +G+ +VASA + LI+
Sbjct: 183 PEHYKVYSQREYTYNDIRQYNRNKLLGEDPSVDGLKTGYTREAGYGLVASAERNGMRLIS 242
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKD-FYQQNLSNEVPNISEEVC 297
V++G R + + SLL+ GF + + K ++ I+++V
Sbjct: 243 VVMGTESTRARARETRSLLNYGFRFYETDVMVAGAEELEKPRVWKGQADYVSVGIADDVV 302
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
T + + + + +
Sbjct: 303 LTLPRGKRNSLVTELVLM-DPISAPLAQGDAVGELTL 338
>gi|312135356|ref|YP_004002694.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
owensensis OL]
gi|311775407|gb|ADQ04894.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
owensensis OL]
Length = 384
Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats.
Identities = 82/313 (26%), Positives = 139/313 (44%), Gaps = 6/313 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D +TG ++ E PAS+TK+MT ++ +++ + L+ + S+
Sbjct: 36 EISAKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDKVIASQ 95
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NAS S K+ MT++ LK + + SAND VA+AE + + ++FV MN +K
Sbjct: 96 NASSLGGSQIYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYIMNKKAKE 155
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK-TDFPQYMHYFQIKGLEIKGKKYPNT 203
LG+ T+F+N +G+ HYT+A D+AI+S + + + + NT
Sbjct: 156 LGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNT 215
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
N V + G G+KTG T + F + ASA++ LIAVI+GA D TR + LL G
Sbjct: 216 NKLVRFYKGCTGVKTGSTDKAKFCVSASALRNGLHLIAVIMGAPDSKTRFNDAVKLLDWG 275
Query: 264 FYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
F N + + +S ++ K+ + K ++
Sbjct: 276 FANFSMYSPYSKGFCFGKVKVRNGIEKEVEVILSTDIKLLVKKGDESTVESKVTLPQQ-I 334
Query: 320 FIDFEKITLLKNK 332
+ +
Sbjct: 335 SAPVKTGQKIGRL 347
>gi|229104683|ref|ZP_04235345.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock3-28]
gi|228678747|gb|EEL32962.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock3-28]
Length = 385
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 87/325 (26%), Positives = 146/325 (44%), Gaps = 8/325 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + +++ +TG V+ + P+ PAS+TK+MT ++ +++ K L
Sbjct: 25 TAPKLAEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDK 84
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ S++A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN
Sbjct: 85 VRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMN 144
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEI 195
+K+LGL THF N G+ HY+TA DMAI+ + ++
Sbjct: 145 KKAKDLGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDYLREDTD 204
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN
Sbjct: 205 KKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQ 264
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMK 311
LL F +K K Q + + S+ V K+ N + +
Sbjct: 265 VTKLLDYAFGQYMTKKMYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQ 324
Query: 312 EAKDKESHFIDFEKITLLKNKITKK 336
E ++ +K L + KK
Sbjct: 325 EVIAEKKVKAPIKKGDALGTLVIKK 349
>gi|29654563|ref|NP_820255.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
RSA 493]
gi|154706869|ref|YP_001424698.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
Dugway 5J108-111]
gi|161830325|ref|YP_001597113.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 331]
gi|29541831|gb|AAO90769.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
RSA 493]
gi|154356155|gb|ABS77617.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
Dugway 5J108-111]
gi|161762192|gb|ABX77834.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 331]
Length = 418
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 93/312 (29%), Positives = 150/312 (48%), Gaps = 4/312 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ Y L+D ++G VIA+ PASLTKLMT YV F LK + L +S
Sbjct: 62 NLDVKGYVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSV 121
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K+G+ + ++ ++ +IV S ND V +A+ + TE F Q MN T+
Sbjct: 122 KAWRTGGSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAAR 181
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
LG+ +H++++ G+ + HY+T DMA+L+ I DFP+Y HYF K L K PN N
Sbjct: 182 LGMKNSHYVDSTGLPRPDHYSTPYDMAVLTRAIINDFPEYYHYFSQKWLTYNNIKQPNRN 241
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
+ ADG+KTG T +G+ ++ASA + + LI+V++GA + R S +LL+ GF
Sbjct: 242 RLLWRDGSADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGF 301
Query: 265 YNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
R+ + K + + +++ + T + N + + +
Sbjct: 302 RFYQTRQLFDANTSITKKRIWMGKRKHAEFGLTQPLYVTLPVGEDKNLKATMSFAIQHLQ 361
Query: 321 IDFEKITLLKNK 332
K
Sbjct: 362 APILKGQSYGEI 373
>gi|229192288|ref|ZP_04319253.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus ATCC 10876]
gi|228591238|gb|EEK49092.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus ATCC 10876]
Length = 385
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 88/318 (27%), Positives = 146/318 (45%), Gaps = 8/318 (2%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S++A
Sbjct: 32 QASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASEHA 91
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+LG
Sbjct: 92 ASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKDLG 151
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
L THF N G+ HY+TA DMAI+ + ++ K N
Sbjct: 152 LKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWLVN 211
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
TN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 212 TNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRIISVVMGAPTSKERNNQVTKLLDY 271
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKES 318
F +K K Q + + S+ V K+ N + +E ++
Sbjct: 272 AFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAEKK 331
Query: 319 HFIDFEKITLLKNKITKK 336
+K L + KK
Sbjct: 332 VKAPIKKGDALGTLVIKK 349
>gi|308048532|ref|YP_003912098.1| penicillin-binding protein 6 [Ferrimonas balearica DSM 9799]
gi|307630722|gb|ADN75024.1| penicillin-binding protein 6 [Ferrimonas balearica DSM 9799]
Length = 387
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 102/336 (30%), Positives = 147/336 (43%), Gaps = 13/336 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ A ++ + A T Y L+D TG V+AEN PASLTK+MT+YV+
Sbjct: 14 VLMSASVTAAPSVIPNAPTVAAGSYVLMDFKTGRVLAENNAYEQRAPASLTKMMTSYVLG 73
Query: 67 SFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
L T + IS NA S + G + L + + ++V+S ND VAI
Sbjct: 74 QELNRGNVRETDMVKISNNAWAKNFPGSSVMWIEVGKEVNLMDLYRGMVVQSGNDACVAI 133
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + TE + MN S LG++ THF NAHG+ TTA DMAIL I D PQ
Sbjct: 134 AEHVAGTESAYTDLMNAWSGQLGMADTHFANAHGLDATDQVTTAYDMAILGRAIIRDIPQ 193
Query: 184 YMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
Y + +K G + N N L DGMKTG T +G+N+V+SA +GD LIAV
Sbjct: 194 YYPLYSLKEFTFNGIRQHNRNGLLWDRSLNVDGMKTGHTNGAGYNLVSSATKGDMRLIAV 253
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEV 296
++GA +R S LL+ GF + Q+ + + V
Sbjct: 254 VMGAKSPQSREAESKKLLNYGFRFFETVTPYKAGDEFTSQKIWYGDKSEVRLGVLEDTPV 313
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + N + E + ++
Sbjct: 314 TIYRGQSDNLKAN---FELSEELKAPLSRGDVVGTV 346
>gi|167040194|ref|YP_001663179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X514]
gi|256752060|ref|ZP_05492928.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
ethanolicus CCSD1]
gi|300914278|ref|ZP_07131594.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X561]
gi|307724486|ref|YP_003904237.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X513]
gi|166854434|gb|ABY92843.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X514]
gi|256749070|gb|EEU62106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
ethanolicus CCSD1]
gi|300889213|gb|EFK84359.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X561]
gi|307581547|gb|ADN54946.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X513]
Length = 381
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 97/350 (27%), Positives = 160/350 (45%), Gaps = 15/350 (4%)
Query: 2 RQFLVIIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
++ L ++ +L+ F + K L++TNTG ++ E P PAS+T
Sbjct: 3 KRLLTLLVSVILAISFVLNGTVYADTLNLKSKSAILIETNTGQILYEKDSHKPLPPASVT 62
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT + + K +T + SK+A + + + G MT+D+ +K + + SAN
Sbjct: 63 KVMTLLLAIEAIDSGKIKITDKVVTSKHAFDMGGTQIYLEVGEEMTVDDLMKAIAMNSAN 122
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D +VA+AE + TE+ FV+ MN +K LG T F NA G+ + GH T+ D+A++S +
Sbjct: 123 DASVALAEYIAGTEENFVEMMNKRAKELGAKNTTFKNATGLPEEGHLTSVYDIAMISREL 182
Query: 178 K-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+ ++ L NTN + + G DG+KTG T + + + A+A +GD
Sbjct: 183 VKHESIFKYLTNKLDSLRNGKFSLINTNKLLWRYKGVDGIKTGSTSEALYCMAATAKRGD 242
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNI- 292
LIAV+ GA D TR +A LL GF N K + + V +
Sbjct: 243 TRLIAVVFGAPDSETRFSEAAKLLDYGFANYESVKVASKGQSFGNVKVLKGKREAVSVVC 302
Query: 293 --SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN----KITKK 336
E + + E N T+++ + I +K K+ KK
Sbjct: 303 RDDEYILIKKGEGKNIKTEVELKNAVLAPLAKEVPIGTVKITQDGKVIKK 352
>gi|229019288|ref|ZP_04176114.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus AH1273]
gi|229025532|ref|ZP_04181942.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus AH1272]
gi|228735814|gb|EEL86399.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus AH1272]
gi|228741973|gb|EEL92147.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus AH1273]
Length = 385
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 87/320 (27%), Positives = 144/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
F +K K + S+ V K+ N + +E +
Sbjct: 270 DYAFGQYMTKKLYTRGEKIKTVQVGKGKEEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 330 KKVKAPIKKGDALGTLVIKK 349
>gi|229031719|ref|ZP_04187712.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus AH1271]
gi|229071580|ref|ZP_04204798.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus F65185]
gi|229081333|ref|ZP_04213836.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock4-2]
gi|229180356|ref|ZP_04307699.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus 172560W]
gi|228603103|gb|EEK60581.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus 172560W]
gi|228701955|gb|EEL54438.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock4-2]
gi|228711516|gb|EEL63473.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus F65185]
gi|228729603|gb|EEL80590.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus AH1271]
Length = 385
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F +K K Q + + S+ V K+ N + +E +
Sbjct: 270 DYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 330 KKVKAPIKKGDALGTLVIKK 349
>gi|187730201|ref|YP_001880973.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella boydii CDC
3083-94]
gi|187427193|gb|ACD06467.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella boydii CDC
3083-94]
Length = 400
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSELNLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 317 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 354
>gi|164685962|ref|ZP_01946170.2| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii 'MSU Goat
Q177']
gi|212218675|ref|YP_002305462.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
CbuK_Q154]
gi|164601484|gb|EAX33225.2| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii 'MSU Goat
Q177']
gi|212012937|gb|ACJ20317.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
CbuK_Q154]
Length = 418
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 4/312 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ Y L+D ++G VIA+ PASLTKLMT YV F LK + L +S
Sbjct: 62 NLDVKGYVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSV 121
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K+G+ + ++ ++ +IV S ND V +A+ + TE F Q MN T+
Sbjct: 122 KAWRTGGSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAAR 181
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
LG+ +H++++ G+ + HY+T DMA L+ I DFP+Y HYF K L K PN N
Sbjct: 182 LGMKNSHYVDSTGLPRPDHYSTPYDMAALTRAIINDFPEYYHYFSQKWLTYNNIKQPNRN 241
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
+ ADG+KTG T +G+ ++ASA + + LI+V++GA + R S +LL+ GF
Sbjct: 242 RLLWRDGSADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGF 301
Query: 265 YNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
R+ + K + + +++ + T + N + + +
Sbjct: 302 RFYQTRQLFDANTSITKKRIWMGKRKHAEFGLTQPLYVTLPVGEDKNLKATMSFAIQHLQ 361
Query: 321 IDFEKITLLKNK 332
K
Sbjct: 362 APILKGQSYGEI 373
>gi|82776165|ref|YP_402512.1| D-alanyl-D-alanine carboxypeptidase fraction C [Shigella
dysenteriae Sd197]
gi|81240313|gb|ABB61023.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae Sd197]
Length = 400
Score = 212 bits (539), Expect = 6e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 152/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A S K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDAWVTGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S +
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLAWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGK 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 317 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 354
>gi|304397023|ref|ZP_07378902.1| Beta-lactamase [Pantoea sp. aB]
gi|304355172|gb|EFM19540.1| Beta-lactamase [Pantoea sp. aB]
Length = 420
Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats.
Identities = 91/337 (27%), Positives = 151/337 (44%), Gaps = 11/337 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ +A +S A + L+D +G V+ E+ D +PASLTK+MT+YVV
Sbjct: 38 LLILAPISVFAEQAPAAPGIDAKAWILIDYASGKVLTESSADQRLDPASLTKMMTSYVVG 97
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIA 120
+K K +T+ ++A K G + + K ++++S ND
Sbjct: 98 QAIKAGKIKPDDLVTVGQDAWATGNPKLRGSSLMFLKPGDRIPVHELNKGIVIQSGNDAC 157
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+A+ + ++ F+ MNN K LGL THFM HG+ G Y+TARDMA+++ + D
Sbjct: 158 IALADYVAGSQDSFIGLMNNYVKALGLQNTHFMTVHGLDAEGQYSTARDMALIAQALIRD 217
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+ + K + N N T L DG+KTG T +G N+VASA +GD L
Sbjct: 218 VPEEYALNKEKEFTFNNIRQINRNRLLWSTNLKVDGVKTGHTSGAGNNLVASATEGDMRL 277
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE 295
I+V+LG R + S LL+ GF I + + + S ++++
Sbjct: 278 ISVVLGTASDAIRFRESEKLLTWGFRFFETVTPIKADAPFAQQRVWFGDKSQVNLGVAKD 337
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + + +K ++
Sbjct: 338 AALTIPKGQMKNLKASFKLNAPQLEAPLKKNQVVGTI 374
>gi|332527505|ref|ZP_08403557.1| serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax
benzoatilyticus JA2]
gi|332111912|gb|EGJ11890.1| serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax
benzoatilyticus JA2]
Length = 381
Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats.
Identities = 91/343 (26%), Positives = 156/343 (45%), Gaps = 13/343 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ L + ++ + Y L+D + V+AE D P +PASLTKLM
Sbjct: 1 MKRLLSLALAFFVAGAHAQAPVPPEVAARQYILIDVSANQVLAERDADTPADPASLTKLM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITIS---KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
+AY+VF+ +++ K L + +S + +Y S +D L+ +IV+S N
Sbjct: 61 SAYLVFNAVRDGKLALDQRVPVSTRAWDERKYGGSLMFIDTRMQPRVDELLRGMIVQSGN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+AE++ T + FV MN ++ GL T F N G+ + GH TT R++A ++ RI
Sbjct: 121 DATVALAEAVGGTVENFVAMMNKQAQAWGLKNTQFRNPSGLTEAGHKTTPREIAYIATRI 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-- 235
D PQ+ + + + N N +G DGMKTG+T A+G+ +VASA +
Sbjct: 181 IQDHPQFYPIYSERAFAFNNIRQDNRNLLLGRDPSVDGMKTGYTEAAGYCLVASAQRDMP 240
Query: 236 --DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEV 289
+ L++V++G R S LL+ G+ + + ++ N S
Sbjct: 241 NGKRRLLSVVMGTASMQARANESQKLLNWGYAAWDAIRLFDAGKAVATVPVWKGNKSEAR 300
Query: 290 PNI--SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ V + E T ++ + +++ LK
Sbjct: 301 LGAPGAIFVAVPRGEGDKLKTSIQRTDPLVAPLQQGQRVGTLK 343
>gi|154686590|ref|YP_001421751.1| DacF [Bacillus amyloliquefaciens FZB42]
gi|63146679|emb|CAG28930.1| penicillin binding protein [Bacillus amyloliquefaciens FZB42]
gi|154352441|gb|ABS74520.1| DacF [Bacillus amyloliquefaciens FZB42]
Length = 389
Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats.
Identities = 84/353 (23%), Positives = 151/353 (42%), Gaps = 17/353 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---------KLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + + + +L + A+ + + L++ +TG ++
Sbjct: 1 MKRLISTLLIGILLTASAPSAFAKPDGKHTSELAHEAKSAVLIERDTGSILYNKNSRERL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+MT ++ L + K ++ + S++A+ S + G MT+ LK +
Sbjct: 61 APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+ S ND +VA+AE + +E+ FV MN +K LGL T F N G+ + HY++A DMA
Sbjct: 121 AIASGNDASVAMAEYIAGSEEDFVSRMNKKAKELGLKDTSFKNPTGLPEKDHYSSAYDMA 180
Query: 172 ILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
++ + + ++ K NTN + + G DG+KTGFT + +
Sbjct: 181 KMAKELLKYDKITQFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTGEAKYC 240
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQ 283
+ A+A +G+ +IAV+ GA RN +L F +
Sbjct: 241 LTATAKKGNMRVIAVVFGASTPKERNAQVTKMLDYAFSQFKTHPLYKRDQIVGTVKVKKG 300
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
SE + K+ N + KE K + +K +L + + KK
Sbjct: 301 KQKLIKLTTSEPISLLAKKGENMDKVKKEVKINGNVTAPVKKGEVLGSLVLKK 353
>gi|229140812|ref|ZP_04269357.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus BDRD-ST26]
gi|228642602|gb|EEK98888.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus BDRD-ST26]
Length = 385
Score = 212 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDYLREDTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F +K K Q + + S+ V K+ N + +E +
Sbjct: 270 DYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 330 KKVKAPIKKGDALGTLVIKK 349
>gi|190575883|ref|YP_001973728.1| putative penicillin-binding protein [Stenotrophomonas maltophilia
K279a]
gi|190013805|emb|CAQ47442.1| putative penicillin-binding protein precursor [Stenotrophomonas
maltophilia K279a]
Length = 404
Score = 212 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 90/320 (28%), Positives = 154/320 (48%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YV+ + +K K + +S+ A
Sbjct: 52 SKAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAW 111
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 112 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 171
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ +HF+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K PN
Sbjct: 172 AKIGMKDSHFVNAHGLTAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPN 231
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ LIAV+LG R S +LL+
Sbjct: 232 RNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNW 291
Query: 263 GFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + + K
Sbjct: 292 GFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTL 351
Query: 317 ESHFIDFEKITLLKNKITKK 336
E+ F ++I +K + K
Sbjct: 352 EAPFTAGQQIGTVKVTLDGK 371
>gi|197284564|ref|YP_002150436.1| penicillin-binding protein [Proteus mirabilis HI4320]
gi|194682051|emb|CAR41559.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
[Proteus mirabilis HI4320]
Length = 400
Score = 212 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 84/337 (24%), Positives = 148/337 (43%), Gaps = 11/337 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + + + Y L+D N+G ++A P+ +PASLTK+M++YVV
Sbjct: 18 LLLIISSPTFAVNNPVPPQIEAKSYVLMDYNSGKILASEKPEERLDPASLTKIMSSYVVG 77
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIA 120
+KE + + + +NA K G + + + + ++++S ND +
Sbjct: 78 QAIKEGRMSPDDIVIVGRNAWATGNPVLKGSSLMFLKPGDRVKVIDLNRGMVIQSGNDAS 137
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+AE + +++ FV MN + NLGL THF HG+ G YTTA+DMA+L+ + D
Sbjct: 138 IALAEHVAGSQETFVDLMNTYAANLGLKNTHFKTVHGLDSEGQYTTAQDMALLTAAMIRD 197
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P + K + PN N + DG+KTG T +G+N+V+SA +G+ L
Sbjct: 198 VPSEYDIHKEKEFTFNNIRQPNRNRLLWNKNMNVDGVKTGHTNGAGYNLVSSATEGNMRL 257
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEE 295
IAV+LGA R S LL GF + + + + ++++
Sbjct: 258 IAVVLGAPSDKVRFAESERLLGWGFRFFETVTPVKENVPLTTQKVWYGDKGEVALGVAKD 317
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + + ++
Sbjct: 318 ASITIPKGELKNLKASFTLTNPELEAPLTQNQVVGTV 354
>gi|229198199|ref|ZP_04324908.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus m1293]
gi|228585359|gb|EEK43468.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus m1293]
Length = 385
Score = 212 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDYLREDTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F +K K Q + + S+ V K+ N + +E +
Sbjct: 270 DYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 330 KKVKAPIKKGDALGTLVIKK 349
>gi|41218|emb|CAA29775.1| unnamed protein product [Escherichia coli K-12]
Length = 400
Score = 212 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 97/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNEDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 317 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 354
>gi|54310018|ref|YP_131038.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
profundum SS9]
gi|46914457|emb|CAG21236.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
profundum SS9]
Length = 391
Score = 212 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 96/350 (27%), Positives = 158/350 (45%), Gaps = 19/350 (5%)
Query: 1 MRQ----FLVIIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHP 50
M++ F IIA A++ +I Y L+D N+G +IAEN D
Sbjct: 1 MKKSAATFQTIIASALMLTSASAAAIPTVVPEAPQIAAKAYILMDYNSGKIIAENNSDEK 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNA 107
+PASLTK++T+YV+ +K L +++S NA S + G +T+
Sbjct: 61 LHPASLTKMLTSYVIGQEIKSGNISLDDKVSVSNNAWAKNFPGSSKMFLEPGKLVTVQEL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
K +I++S ND A+AE + + FV+ MN +K +G+ ++HF+N HG+ H++TA
Sbjct: 121 NKGIIIQSGNDACTAMAEHIAGSTGSFVELMNAWAKRIGMESSHFVNVHGLDNDDHFSTA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGF 226
DMA L+ + D P ++ K G N N L DGMKTG T +G+
Sbjct: 181 HDMATLAQAVIRDVPDEYAIYKEKSFTYNGITQYNRNGLLWDKSLNVDGMKTGHTDQAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQ 282
++VASA +G LI+V++G N R S LL+ GF + + +
Sbjct: 241 SLVASAYEGKMRLISVVMGTKSANARKAESKKLLNYGFRFFETVTPHKANETFVTEKVWM 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ ++E+ T + + +KE K ++
Sbjct: 301 GDIDQVNLGVTEDTFVTLPRGQTKDLKASFVLEKE-LKAPIAKGDVVGKL 349
>gi|308186205|ref|YP_003930336.1| D-alanyl-D-alanine carboxypeptidase [Pantoea vagans C9-1]
gi|308056715|gb|ADO08887.1| D-alanyl-D-alanine carboxypeptidase [Pantoea vagans C9-1]
Length = 400
Score = 212 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 91/337 (27%), Positives = 151/337 (44%), Gaps = 11/337 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ +A +S A + L+D +G V+ E+ D +PASLTK+MT+YVV
Sbjct: 18 LLILAPISVFAEQAPAAPGIDAKAWILIDYASGKVLTESSADQRLDPASLTKMMTSYVVG 77
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIA 120
+K K +T+ ++A K G + + K ++++S ND
Sbjct: 78 QAIKAGKIKPDDLVTVGQDAWATGNPKLRGSSLMFLKPGDRIPVHELNKGIVIQSGNDAC 137
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+A+ + ++ F+ MNN K LGL THFM HG+ G Y+TARDMA+++ + D
Sbjct: 138 IALADYVAGSQDSFIGLMNNYVKALGLQNTHFMTVHGLDAEGQYSTARDMALIAQALIRD 197
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+ + K + N N T L DG+KTG T +G N+VASA +GD L
Sbjct: 198 VPEEYALNKEKEFTFNKIRQINRNRLLWSTNLKVDGVKTGHTSGAGNNLVASATEGDMRL 257
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE 295
I+V+LG R + S LL+ GF I + + + S ++++
Sbjct: 258 ISVVLGTASDAIRFRESEKLLTWGFRFFETVTPIKADAPFAQQRVWFGDKSQVNLGVAKD 317
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + + +K ++
Sbjct: 318 AALTIPKGQMKNLKASFKLNAPQLEAPLKKNQVVGTI 354
>gi|212212357|ref|YP_002303293.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
CbuG_Q212]
gi|212010767|gb|ACJ18148.1| D-alanyl-D-alanine serine-type carboxypeptidase [Coxiella burnetii
CbuG_Q212]
Length = 418
Score = 212 bits (538), Expect = 7e-53, Method: Composition-based stats.
Identities = 93/312 (29%), Positives = 150/312 (48%), Gaps = 4/312 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ Y L+D ++G VIA+ PASLTKLMT YV F LK + L +S
Sbjct: 62 NLDVKGYVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSI 121
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K+G+ + ++ ++ +IV S ND V +A+ + TE F Q MN T+
Sbjct: 122 KAWRTGGSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAAR 181
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
LG+ +H++++ G+ + HY+T DMA+L+ I DFP+Y HYF K L K PN N
Sbjct: 182 LGMKNSHYVDSTGLPRPDHYSTPYDMAVLTRAIINDFPEYYHYFSQKWLTYNNIKQPNRN 241
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
+ ADG+KTG T +G+ ++ASA + + LI+V++GA + R S +LL+ GF
Sbjct: 242 RLLWRDGSADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGF 301
Query: 265 YNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
R+ + K + + +++ + T + N + + +
Sbjct: 302 RFYQTRQLFDANTSITKKRIWMGKRKHAEFGLTQPLYVTLPVGEDKNLKATMSFAIQHLQ 361
Query: 321 IDFEKITLLKNK 332
K
Sbjct: 362 APILKGQSYGEI 373
>gi|194433152|ref|ZP_03065434.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella dysenteriae
1012]
gi|194418649|gb|EDX34736.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella dysenteriae
1012]
Length = 403
Score = 212 bits (538), Expect = 8e-53, Method: Composition-based stats.
Identities = 96/338 (28%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 20 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 79
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 80 GQALKADKIKLTDMVTVGKDARATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 139
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 140 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 199
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DG+KTG T +G+N+VASA QGD
Sbjct: 200 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGIKTGTTAGAGYNLVASATQGDMR 259
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 260 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 319
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 320 AGSVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTI 357
>gi|157692847|ref|YP_001487309.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
SAFR-032]
gi|157681605|gb|ABV62749.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
SAFR-032]
Length = 400
Score = 212 bits (538), Expect = 8e-53, Method: Composition-based stats.
Identities = 93/357 (26%), Positives = 156/357 (43%), Gaps = 22/357 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE--------------TNKLPYYTLLDTNTGHVIAENYP 47
R + + +L ++ +IA+ ++ L++ +TG V+
Sbjct: 8 RHICALFTLMILISMVSPSAIAKEKIEKPEEKQTSELAHEAKSAILIERDTGKVLYNKNS 67
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D PAS+TK+MT ++ + + K +T + S +A+ S + G MT+
Sbjct: 68 DEKLAPASMTKIMTMLLIMEAIDQGKLKMTDKVRTSDHAASMGGSQIFLEPGEEMTVKEM 127
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
LK + + S ND +VA+AE + +E++FV+ MN +K LGL++T F N G+ + HY+TA
Sbjct: 128 LKGIAIASGNDASVAMAEHIAGSEEQFVEQMNKKAKELGLTSTVFQNPTGLPEKDHYSTA 187
Query: 168 RDMAILSWRIKTDFPQYM----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
DMA ++ + + ++ K NTN + + G DG+KTGFT
Sbjct: 188 HDMAKMAKELLKYEQITKFTGVYEDYLRQNTDKKFWLVNTNRLIKFYPGVDGLKTGFTGE 247
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
+ + + ASA +G+ +IAV+ GA RN +L F T +
Sbjct: 248 AKYCLTASAKKGNMRVIAVVFGASTPKDRNAQVVKMLDYAFSQYTTHPLYKRGQDVAEIK 307
Query: 284 NLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
I SE + K+ N + KE K + F K T L + KK
Sbjct: 308 VSKGTKKKIQLVTSEPISLLTKKGENVDQIKKEIKLSQDVTAPFSKGTELGTIVLKK 364
>gi|229061749|ref|ZP_04199082.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus AH603]
gi|229168820|ref|ZP_04296539.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus AH621]
gi|228614668|gb|EEK71774.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus AH621]
gi|228717495|gb|EEL69159.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus AH603]
Length = 385
Score = 212 bits (538), Expect = 8e-53, Method: Composition-based stats.
Identities = 86/320 (26%), Positives = 144/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
F +K K + S+ V K+ N + +E +
Sbjct: 270 DYAFGQYMTKKLYTRGEKIKTVQVGKGKEEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + K+
Sbjct: 330 KKVKAPIKKGDALGTLVIKR 349
>gi|229013286|ref|ZP_04170427.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus mycoides DSM 2048]
gi|229134885|ref|ZP_04263692.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus BDRD-ST196]
gi|228648560|gb|EEL04588.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus BDRD-ST196]
gi|228748053|gb|EEL97917.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus mycoides DSM 2048]
Length = 385
Score = 212 bits (538), Expect = 9e-53, Method: Composition-based stats.
Identities = 85/320 (26%), Positives = 143/320 (44%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K L + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLNDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDYLRENTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
F +K K + S+ V K+ N + +E +
Sbjct: 270 DYAFGQYMTKKLYTRGEKIKTVQVGKGKEEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + K+
Sbjct: 330 KKVKAPIKKGDALGTLVIKR 349
>gi|229093134|ref|ZP_04224256.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock3-42]
gi|228690283|gb|EEL44076.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus Rock3-42]
Length = 385
Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDYLREDTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F +K K Q + + S+ V K+ N + +E +
Sbjct: 270 DYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 330 KKVKAPIKKGDALGTLVIKK 349
>gi|302871646|ref|YP_003840282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
obsidiansis OB47]
gi|302574505|gb|ADL42296.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
obsidiansis OB47]
Length = 386
Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats.
Identities = 83/313 (26%), Positives = 139/313 (44%), Gaps = 6/313 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D +TG ++ E PAS+TK+MT ++ +++ + L+ + S+
Sbjct: 38 EISAKSAILVDFDTGKILYEKNSHEKLPPASITKIMTMILICEAIEKGRIKLSDKVVASQ 97
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NAS S K+ MT++ LK + + SAND VA+AE + + ++FV MN +K
Sbjct: 98 NASSLGGSQVYLKENEEMTVEELLKSIAIASANDACVALAEHIAGSVQEFVYMMNKKAKE 157
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK-TDFPQYMHYFQIKGLEIKGKKYPNT 203
LG+ T+F+N +G+ HYT+A D+AI+S + + + + NT
Sbjct: 158 LGMLDTNFVNPYGLDAENHYTSAYDVAIMSRELLKHKIIRKYLTTWVDTIREGKFGLTNT 217
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
N V + G G+KTG T + F I ASA++ LIAVI+GA D TR + +L G
Sbjct: 218 NKLVRFYRGCTGVKTGSTDKAKFCISASALRNGLHLIAVIMGAPDSKTRFNDATKVLDWG 277
Query: 264 FYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
F N + + +S +V K+ + K ++
Sbjct: 278 FANFSMYSPYSKGFCFGKVKVKNGIEKEVEVILSTDVKLLVKKGDESTVESKVTLPQQ-I 336
Query: 320 FIDFEKITLLKNK 332
+ +
Sbjct: 337 SAPVKTGQKIGKL 349
>gi|121997803|ref|YP_001002590.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halorhodospira halophila
SL1]
gi|121589208|gb|ABM61788.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Halorhodospira halophila SL1]
Length = 392
Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats.
Identities = 97/357 (27%), Positives = 166/357 (46%), Gaps = 24/357 (6%)
Query: 1 MRQFLV------IIAMAMLSNIFP------------FLSIAETNKLPYYTLLDTNTGHVI 42
MR+ L+ ++ + ++ + P + L+D ++G+++
Sbjct: 2 MRRTLLRVLVPALLTVGLIPMAMADERWGTPIVESVPTPSPPSVGAPSHLLVDMHSGYIL 61
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
A P+ W PASL K+MTAYVVF L L +T+S+ A S + G+ +
Sbjct: 62 AHRDPEESWEPASLAKIMTAYVVFEELASGHIGLEDKVTVSEKAWRSSGSRMFLEVGTEV 121
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T+ L+ LIV+S ND AVA+AE + E+ F Q MN + LG+ TH+ NA G+
Sbjct: 122 TVAELLQGLIVQSGNDAAVALAEHVAGDEETFAQVMNQYASRLGMDNTHYTNATGMPHEQ 181
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
TTA+D A L+ + DFP++ ++ + E G N N + DG+KTG+T
Sbjct: 182 MRTTAQDTARLARAMIDDFPEFYDWYSQRSFEYAGINQHNRNRLLWRDETVDGLKTGYTS 241
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
++G+N+V SA +G LI+V+LG + R + S LL+ GF + + +
Sbjct: 242 SAGYNLVTSAERGGMRLISVVLGTESEDARAQQSLQLLNYGFRFFETHRLYSAGEQLTEA 301
Query: 283 QNLSNEVPNI------SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ E ++ + V ++E N + + + K+ LK ++
Sbjct: 302 RAWMGEGDSVALGIPDNLYVTIPRQEYDNLSASVSVDGQIRAPVEAGAKLGTLKIEL 358
>gi|228929125|ref|ZP_04092152.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228935397|ref|ZP_04098215.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228947796|ref|ZP_04110083.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|229123599|ref|ZP_04252794.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus 95/8201]
gi|229157660|ref|ZP_04285735.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus ATCC 4342]
gi|228625617|gb|EEK82369.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus ATCC 4342]
gi|228659734|gb|EEL15379.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus 95/8201]
gi|228811783|gb|EEM58117.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228824149|gb|EEM69963.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228830415|gb|EEM76025.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
Length = 385
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDYLREDTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F +K K Q + + S+ V K+ N + +E +
Sbjct: 270 DYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 330 KKVKAPIKKGDALGTLVIKK 349
>gi|85713001|ref|ZP_01044039.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina baltica OS145]
gi|85693170|gb|EAQ31130.1| D-alanyl-D-alanine carboxypeptidase [Idiomarina baltica OS145]
Length = 388
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 85/339 (25%), Positives = 150/339 (44%), Gaps = 9/339 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
LV + +++ + Y L+D TG V+AE D PASLTK+MT+Y+
Sbjct: 14 LVAVFSFGVASAQSLVPNPPQVNAKAYILIDHKTGKVLAEGNADESLPPASLTKMMTSYI 73
Query: 65 VFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ ++ + + +TIS+NA S + G+ +++ + +I+ S ND V
Sbjct: 74 IGKEIQAGRISNSDMVTISENAWAKNFPESSKMFIEVGTEVSVSDLNHGIIISSGNDACV 133
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+AE + +E F MN ++ +G++++HF N+HG+ Y +ARDM+ L+ + +
Sbjct: 134 AMAEYIAGSEGAFADLMNTYAQEVGMTSSHFANSHGLPDPEQYVSARDMSKLASALINET 193
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P+ + K K N N + DG+KTG T +G+++V SA+ GD LI
Sbjct: 194 PEEYKIYSQKSYTYNNIKQYNRNALLWDRSMNVDGIKTGHTSEAGYSLVTSAVDGDTRLI 253
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEV 296
+V++G R S LL+ GF + + + ISE+V
Sbjct: 254 SVVIGTGSEQARKIESKKLLNYGFRYYETVTAYEAGESFVSQRIWGGDKDQVELGISEDV 313
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T + ++E +K + +
Sbjct: 314 VITLPRGQRDKLKANFELNQE-LEAPLQKGEHVGTVYLQ 351
>gi|227356744|ref|ZP_03841129.1| D-alanyl-D-alanine carboxypeptidase [Proteus mirabilis ATCC 29906]
gi|227163034|gb|EEI47969.1| D-alanyl-D-alanine carboxypeptidase [Proteus mirabilis ATCC 29906]
Length = 400
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 84/337 (24%), Positives = 148/337 (43%), Gaps = 11/337 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + + + Y L+D N+G ++A P+ +PASLTK+M++YVV
Sbjct: 18 LLLIISSPTFAVNNPVPPQIEAKSYVLMDYNSGKILASEKPEERLDPASLTKIMSSYVVG 77
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIA 120
+KE + + + +NA K G + + + + ++++S ND +
Sbjct: 78 QAIKEGRMSPDDIVIVGRNAWATGNPVLKGSSLMFLKPGDRVKVIDLNRGMVIQSGNDAS 137
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+AE + +++ FV MN + NLGL THF HG+ G YTTA+DMA+L+ + D
Sbjct: 138 IALAEHVAGSQETFVDLMNTYAANLGLKNTHFKTVHGLDSEGQYTTAQDMALLTAAMIRD 197
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P + K + PN N + DG+KTG T +G+N+V+SA +G+ L
Sbjct: 198 VPSEYDIHKEKEFTFNNIRQPNRNRLLWNKNMNVDGVKTGHTNGAGYNLVSSATEGNMRL 257
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEE 295
IAV+LGA R S LL GF + + + + ++++
Sbjct: 258 IAVVLGAPSDKVRFAESERLLGWGFRFFETVTPVKENVPLTTQKVWYGDKGEVALGVAKD 317
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + + ++
Sbjct: 318 ASITIPKGELKNLKASFTLTNPELEAPLTQNQIVGTV 354
>gi|254521328|ref|ZP_05133383.1| D-alanyl-D-alanine carboxypeptidase [Stenotrophomonas sp. SKA14]
gi|219718919|gb|EED37444.1| D-alanyl-D-alanine carboxypeptidase [Stenotrophomonas sp. SKA14]
Length = 406
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 89/320 (27%), Positives = 154/320 (48%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YV+ + +K K + +S+ A
Sbjct: 54 SKAWVLMDYATGQVLAGENVHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAW 113
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 114 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 173
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ +HF+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K PN
Sbjct: 174 AKIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPN 233
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ LIAV+LG R S +LL+
Sbjct: 234 RNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNW 293
Query: 263 GFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + + K
Sbjct: 294 GFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTL 353
Query: 317 ESHFIDFEKITLLKNKITKK 336
E+ F +++ +K + K
Sbjct: 354 EAPFTAGQQVGTVKVTLDGK 373
>gi|165918943|ref|ZP_02219029.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 334]
gi|165917340|gb|EDR35944.1| D-alanyl-D-alanine carboxypeptidase [Coxiella burnetii RSA 334]
Length = 384
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 93/312 (29%), Positives = 151/312 (48%), Gaps = 4/312 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ Y L+D ++G VIA+ PASLTKLMT YV F LK + L +S
Sbjct: 28 NLDVKGYVLMDADSGIVIAQKNMTQRLQPASLTKLMTLYVTFQALKSAQIHLDDKAKVSV 87
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K+G+ + ++ ++ +IV S ND V +A+ + TE F Q MN T+
Sbjct: 88 KAWRTGGSRMFLKEGAEVPVNLLIQGIIVASGNDACVTMAQYIGGTEPSFAQMMNQTAAR 147
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
LG+ +H++++ G+ + HY+T DMA+L+ I DFP+Y HYF K L K PN N
Sbjct: 148 LGMKNSHYVDSTGLPRPDHYSTPYDMAVLTRAIINDFPEYYHYFSQKWLTYNNIKQPNRN 207
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
+ ADG+KTG T +G+ ++ASA + + LI+V++GA + R S +LL+ GF
Sbjct: 208 RLLWRDGSADGLKTGHTEEAGYCLIASAKRNNMRLISVVMGAPTDSERADDSEALLNYGF 267
Query: 265 YNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
R+ + K + + +++ + T + N + + + +
Sbjct: 268 RFYQTRQLFDANTSITKKRIWMGKRKHAEFGLTQPLYVTLPVGEDKNLKARMSFAIQHLQ 327
Query: 321 IDFEKITLLKNK 332
K
Sbjct: 328 APILKGQSYGEI 339
>gi|229047768|ref|ZP_04193348.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus AH676]
gi|228723560|gb|EEL74925.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus AH676]
Length = 377
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 22 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEEVEKGKLKLTDKVRASE 81
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 82 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 141
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 142 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWL 201
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 202 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 261
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F +K K Q + + S+ V K+ N + +E +
Sbjct: 262 DYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 321
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 322 KKVKAPIKKGDALGTLVIKK 341
>gi|153833629|ref|ZP_01986296.1| penicillin-binding protein 5 [Vibrio harveyi HY01]
gi|156977638|ref|YP_001448544.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116]
gi|148870027|gb|EDL68982.1| penicillin-binding protein 5 [Vibrio harveyi HY01]
gi|156529232|gb|ABU74317.1| hypothetical protein VIBHAR_06426 [Vibrio harveyi ATCC BAA-1116]
Length = 389
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 98/333 (29%), Positives = 145/333 (43%), Gaps = 9/333 (2%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A + A Y L+D +TG V+ E D NPASLTKLMTAYV +K
Sbjct: 20 AFSFAAPTVVPNAPELSSRGYVLMDYHTGTVLVERDADKRLNPASLTKLMTAYVAGQEVK 79
Query: 71 EKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L + IS+NA S + G++++L + + LIV+S ND +VAIAE +
Sbjct: 80 SGNISLDDEVVISRNAWAKNFPDSSKMFIEVGTSVSLSDLYRGLIVQSGNDASVAIAEHV 139
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E FV MN+ + LGLS + F N HG+ G Y+T RD+A L I D P
Sbjct: 140 AGSEAGFVGLMNSWANQLGLSNSAFTNPHGLDSDGLYSTPRDIATLGRAIIRDLPDIYPL 199
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ G N N + DGMKTG+T +G+++ SA GD L+AV++GA
Sbjct: 200 YSETSFTYNGITQYNRNGLLRDRSMSVDGMKTGYTSGAGYSLATSATNGDMRLVAVVMGA 259
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKE 302
+ R S LLS GF + + N + ++ T +
Sbjct: 260 KSPSVRESESKQLLSYGFRFFDTVVPTQAGKEVATARVWMGNQDELKVGVDRDIYLTLPK 319
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
N E + ++ ++ + K
Sbjct: 320 GD-VNKLEAEVEYNGDLMAPIQQNQVVGKVLYK 351
>gi|228987267|ref|ZP_04147388.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|228772496|gb|EEM20941.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 385
Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMAKELMKYPLIRKYTGKYEDYLREDTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F +K K Q + + S+ V K+ N + +E +
Sbjct: 270 DYAFGQYMTKKLYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 330 KKVKAPIKKGDALGTLVIKK 349
>gi|253990345|ref|YP_003041701.1| penicillin-binding protein 6 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253781795|emb|CAQ84958.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidas
fraction c) (dd-pept (dd-carboxypeptidase) (pbp-6)idase)
[Photorhabdus asymbiotica]
Length = 400
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 94/345 (27%), Positives = 162/345 (46%), Gaps = 14/345 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE---TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ ++A+ +++N + S + Y L+D ++G ++A N PD +PASLTK
Sbjct: 10 KCVTAVLAVILVANTHAYASDEPLVPSVDAKAYVLMDYDSGKILASNNPDERLDPASLTK 69
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLI 112
+MT+YV+ +K K +T+ K+A K G + + + + ++
Sbjct: 70 IMTSYVIGQAIKAGKITPEDVVTVGKDAWATGNPVLKGSSLMFLKPGDQVKVIDLNRGIV 129
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
++S ND ++A+A+ + ++ FV MNN K+LGL+ THF HG+ G ++TARDMA+
Sbjct: 130 IQSGNDASIALADYVAGSQDTFVSLMNNYVKSLGLTNTHFQTVHGLDAEGQFSTARDMAV 189
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVAS 231
LS + D P + K + PN N + DG+KTG+T +G+N+VAS
Sbjct: 190 LSQAMIRDVPDEYVLHKEKAFTFNKIQQPNRNRLLWNKSINVDGVKTGYTSGAGYNLVAS 249
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSN 287
A +G LI+V+LGA R S LLS GF I + + + + S+
Sbjct: 250 ATEGPMRLISVVLGAPSDRVRFAESEKLLSWGFRFYETVTPIKASESFVSEKVWYGDRSD 309
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
V + ++ T N + ++ K ++
Sbjct: 310 VVLGVEKDAAITIPRGQLKNLKASYTLNQTPLEAPLAKNQVVGVI 354
>gi|91776847|ref|YP_546603.1| penicillin-binding protein 6 [Methylobacillus flagellatus KT]
gi|91710834|gb|ABE50762.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Methylobacillus flagellatus KT]
Length = 385
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 92/331 (27%), Positives = 151/331 (45%), Gaps = 6/331 (1%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
ML + T + Y L D N+ VIAE + PASLTK+MTAY+ F
Sbjct: 18 AFTANMLMAHAADIPQPPTLAVKSYQLYDFNSERVIAEQDGNSRVEPASLTKIMTAYLAF 77
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+K LT + +S A + S + +T+D L +I++S ND ++A+AE
Sbjct: 78 KAIKNGHLTLTQTLPVSVKAWKVEGSKMFIEPNKPVTVDELLHGMIIQSGNDASIALAEG 137
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E+ F + MN + LG+ TH++NA G+ HYTTA D+A+L+ + DFP +
Sbjct: 138 IAGSEEGFAELMNKEAARLGMKGTHYVNATGLPDPQHYTTAHDLALLAAALIRDFPDHYK 197
Query: 187 Y-FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ +K PN N + DGMKTG T ++G+ +V SA +GD +I+V+LG
Sbjct: 198 RLYSMKEYTYNKISQPNRNRLLWLDPYVDGMKTGHTKSAGYCLVTSAKRGDTRMISVVLG 257
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQK 301
A R S LL+ GF + + ++ ++ V +++ V T
Sbjct: 258 APSDAARATESQKLLNYGFQFYESKLVYKRGAEVSSLKVWKGAENSVVATVAKNVSITLP 317
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + K ++ +
Sbjct: 318 KGEYARVKAKVV-SQQPLIAPVSAGQQVGKI 347
>gi|283784604|ref|YP_003364469.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
[Citrobacter rodentium ICC168]
gi|282948058|emb|CBG87622.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
[Citrobacter rodentium ICC168]
Length = 400
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 99/338 (29%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ A A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 LLFLFAPAVMAAEQTIAAPAVEARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +TI K+A S K G + + + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTIGKDAWATGNPALRGSSVMFLKPGDRVAVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G Y+TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFRTVHGLDAPGQYSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + + DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNINVDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R S LL+ GF I + + + + S E
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGFRFYETVTPIKPDATFVTQRVWFGDKSEVNLGAGE 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + + +K ++
Sbjct: 317 AGSVTIPRGQLKNLKASFTLSEPQLTAPLKKGQVVGTI 354
>gi|229163014|ref|ZP_04290970.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus R309803]
gi|228620420|gb|EEK77290.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus cereus R309803]
Length = 385
Score = 211 bits (536), Expect = 1e-52, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 146/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ + P+ PAS+TK+MT ++ +++ K LT + S+
Sbjct: 30 AEQASSAIVIEQDTGKVLFDKNPNEKLPPASMTKIMTMLLIMEQVEKGKLKLTDKVRASE 89
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 90 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DMAI+ + ++ K
Sbjct: 150 LGLKNTHFQNPTGLPAKDHYSTANDMAIMARELMKYPLIRKYTGKYEDYLREDTDKKFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 210 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 269
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F +K K Q + + S+ V K+ N + +E +
Sbjct: 270 DYAFGQYMTKKMYTRGEKIKTVQVGKGKKEKVDLVASDNVSLLMKKGENMDKVKQEVIAE 329
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 330 KKVKAPIKKGDALGTLVIKK 349
>gi|313202207|ref|YP_004040865.1| beta-lactamase [Methylovorus sp. MP688]
gi|312441523|gb|ADQ85629.1| Beta-lactamase [Methylovorus sp. MP688]
Length = 378
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 92/336 (27%), Positives = 148/336 (44%), Gaps = 6/336 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R F ++ A+ L+ + + + Y L D N+ IA+ D PASLTKLMT
Sbjct: 6 RIFTLVAAVCSLTVQAAEIPPPPSLAVKSYVLRDFNSQSTIAQQAGDERVEPASLTKLMT 65
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
AY+ F +K LT + IS A + S + +T+D L +I++S ND ++
Sbjct: 66 AYLSFKAVKNGHLQLTQTLPISIKAWKVEGSKMFVEPNRPVTVDELLHGMIIQSGNDASI 125
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+AE + TE+ F MN + LG+ THFMNA G+ HYTTA D+++L+ + DF
Sbjct: 126 ALAEGIAITEEAFADLMNKEAARLGMKNTHFMNATGLPDPQHYTTAYDLSLLASALIRDF 185
Query: 182 PQYMHY-FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P+ + K PN N + DGMKTG T +G+ +++SA +G+ LI
Sbjct: 186 PEDYKRLYSQKQYSYNNITQPNRNRLLWLDPYVDGMKTGHTKTAGYCLISSAKRGETRLI 245
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEV 296
+V+LG + R S LL+ GF ++ + + ++
Sbjct: 246 SVVLGTPSDSARATESQKLLNYGFQFYESHLVYKRGQPINQLKVWKGQDNLVAATVPTDL 305
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + + K + +
Sbjct: 306 SITLPKGEYARVKAKVTSRQP-LIAPISAGQDVGTI 340
>gi|269961828|ref|ZP_06176185.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3]
gi|269833406|gb|EEZ87508.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3]
Length = 389
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 98/333 (29%), Positives = 145/333 (43%), Gaps = 9/333 (2%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A + A Y L+D +TG V+ E D NPASLTKLMTAYV +K
Sbjct: 20 AFSFAAPTVVPNAPELSSRGYVLMDYHTGTVLVERDADKRLNPASLTKLMTAYVAGQEVK 79
Query: 71 EKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L + IS+NA S + G++++L + + LIV+S ND +VAIAE +
Sbjct: 80 SGNISLDDEVVISRNAWAKNFPDSSKMFIEVGTSVSLSDLYRGLIVQSGNDASVAIAEHV 139
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E FV MN+ + LGLS + F N HG+ G Y+T RD+A L I D P
Sbjct: 140 AGSEAGFVGLMNSWANQLGLSNSAFTNPHGLDSDGLYSTPRDIATLGRAIIRDLPDIYPL 199
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ G N N + DGMKTG+T +G+++ SA GD L+AV++GA
Sbjct: 200 YSETSFTYNGITQYNRNGLLRDRSMSVDGMKTGYTSGAGYSLATSATNGDMRLVAVVMGA 259
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKE 302
+ R S LLS GF + + N + ++ T +
Sbjct: 260 KSPSVRESESKQLLSYGFRFFDTVVPTQAGKEVATARVWMGNQDELKVGVDRDIYLTLPK 319
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
N E + ++ ++ + K
Sbjct: 320 GD-VNKLEAEVEYNGDLMAPIQQDQVVGKVLYK 351
>gi|300313593|ref|YP_003777685.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding)
transmembrane protein [Herbaspirillum seropedicae SmR1]
gi|300076378|gb|ADJ65777.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding)
transmembrane protein [Herbaspirillum seropedicae SmR1]
Length = 384
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 108/354 (30%), Positives = 170/354 (48%), Gaps = 19/354 (5%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ L +++++ L T + LLD + VIA + PD PAS
Sbjct: 1 MKKLLAALAATVLSISTL-TASAQSLPPPTVAAKSWLLLDASANQVIASSDPDTRVEPAS 59
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIV 113
LTKLMTAY+ F+ L++K+ L +++S NA + P S + +++DN L LI
Sbjct: 60 LTKLMTAYLAFAALRDKRLSLEQEVSVSVNAWKVDPSSSKMFIEPNKPVSIDNLLYGLIS 119
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND AVA+AE++ TE FVQ MN ++ GL+ THF N HG+ YTTARD++IL
Sbjct: 120 VSGNDAAVAVAEAVSGTEDAFVQLMNREAQRQGLTNTHFSNPHGLPSPDTYTTARDLSIL 179
Query: 174 SWRIKTDFPQYMH-YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ DFP+Y Y+ +K PN N + DGMKTG T ++G++++ SA
Sbjct: 180 CRNLINDFPEYYKRYYSVKKFTYNNITQPNRNRLLWLDPTVDGMKTGHTSSAGYSLITSA 239
Query: 233 IQ----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQN 284
+ G++ LI+V++G + R + S LL+ GF N K D ++ +
Sbjct: 240 HRPVPNGERRLISVVIGTVSDQVRTQESQKLLNWGFQNFDAVKLYAKGQPVDTPDVWKGS 299
Query: 285 LSNEVPNISEEV--CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+V + T++ + + K+ LK I K
Sbjct: 300 QGKIKVGFKNDVYITIPKGTADKVKTKLDRNDPLIAPIAEGAKVGTLKVTIDDK 353
>gi|295706485|ref|YP_003599560.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium DSM 319]
gi|294804144|gb|ADF41210.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium DSM 319]
Length = 388
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 89/346 (25%), Positives = 148/346 (42%), Gaps = 12/346 (3%)
Query: 3 QFLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ LV+I + L + + L++ +TG ++ E + PAS+TK
Sbjct: 7 KLLVVIFLFPLMTQPVLAAEKKNSELADSARSAILIERDTGKILYEKNSNQELPPASMTK 66
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT ++ L + K L + S+ A+ S + G MT+++ LK + + S ND
Sbjct: 67 IMTMILIMEALDKGKITLKDKVRASEYAASMGGSQIFLEPGEEMTVNDLLKGIAIGSGND 126
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
++A+AE L +E+KFV MN +K LGL+ T F N G+ HY+TA DMA++ +
Sbjct: 127 ASMAMAEHLAGSEEKFVAKMNQKAKELGLTHTKFQNPTGLPVENHYSTAHDMAMMGRELL 186
Query: 179 TDFPQYMHYFQI----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + + K NTN V + G DG+KTGFT + + + A+A +
Sbjct: 187 KYEKIINYTSKYEAYLRTDTDKKFWLVNTNRLVKFYPGVDGLKTGFTGQAKYCLTATAKK 246
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVP 290
G+ ++AV+ GA RN +L F T + D + +
Sbjct: 247 GNMRVLAVVFGASTPKDRNNQVTKMLDYAFSQYTTKPLYKKGDVITKIDVNKGSEDQVTA 306
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
SE + K+ E K E +K + KK
Sbjct: 307 VTSEPISVLLKKGNAAKDVKTEVKMNEKLNAPIQKGDKIGTLTIKK 352
>gi|118602482|ref|YP_903697.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567421|gb|ABL02226.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
Length = 375
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 95/337 (28%), Positives = 166/337 (49%), Gaps = 2/337 (0%)
Query: 1 MRQFLVIIAMAMLSN--IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ +++I+ +L+ + A Y+++D N+G VIA + PASLTK
Sbjct: 7 IKPLVILISSLVLNTQAVIFITPKAPKISTAAYSIVDYNSGKVIASSKQHDKRAPASLTK 66
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAYVVF F+ + + L + ISK A + S S + G ++ L+ LK +I++S ND
Sbjct: 67 LMTAYVVFQFINDGRISLEDEVRISKKAWKTGGSKSFVEVGKSIKLETLLKGMIIQSGND 126
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
AVA+AE + TE F +MN ++ LG++ + F NA G+ YTTA D+ +L+
Sbjct: 127 SAVALAEHIAGTESTFTTYMNEYARQLGMNNSWFENASGLPNDNQYTTAADITLLAIATI 186
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
DFP++ ++ K G K N N + + DG+KTGFT +G+N+VASA +
Sbjct: 187 RDFPKFYQWYSQKEFTYHGIKQRNRNKLLWSDHTVDGLKTGFTKKAGYNLVASAKRAGMR 246
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
LI+V+LG+ N R + +L GF + + + + + + +V +
Sbjct: 247 LISVVLGSSSVNARTSQTQKILDYGFRFFETQTIKDIKKEVPIASATKDTLKVGTSKVGS 306
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + + +K ++ + +
Sbjct: 307 FTLVRGQFKLSDQVIQLDTALSAPIKKGDIVGKLLIQ 343
>gi|293606885|ref|ZP_06689233.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii
ATCC 43553]
gi|292814737|gb|EFF73870.1| D-alanyl-D-alanine carboxypeptidase DacA [Achromobacter piechaudii
ATCC 43553]
Length = 386
Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats.
Identities = 99/349 (28%), Positives = 160/349 (45%), Gaps = 13/349 (3%)
Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ +++A A LS+ + LLD +G VIA + PASLTK
Sbjct: 3 MKKLAASLLVATACLSSAMAQSMPQPELSAKAWLLLDETSGQVIASHAATTRIEPASLTK 62
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSA 116
+MTAYVVF L +K+ + IS A + P S + GS +T+D+ L+ L+++S
Sbjct: 63 IMTAYVVFDALSKKELSANQTVVISTRAWKVPAGSSKMFLEPGSKVTVDDLLRGLMIQSG 122
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A+A+AE++ + + FV MN+T+ LGL ATHF + HG+ G Y+TA D+++L+ R
Sbjct: 123 NDAAIALAEAVSGSVEAFVARMNDTAARLGLHATHFASPHGLPDPGTYSTASDLSVLATR 182
Query: 177 IKTDFPQYMH-YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ- 234
D+PQ Y K PN N + DG+KTG T ++G+ IVA+A +
Sbjct: 183 FIRDYPQLYKTYDSAKQFTFNKITQPNRNRLLWLDPSVDGLKTGHTDSAGYCIVATARRP 242
Query: 235 ---GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSN 287
+ LI V++G R + S LL GF K + ++ +
Sbjct: 243 NGSDQRRLITVVVGTASDKLRTQESRQLLEWGFQGFNTIKLYARGQAVATPEVWKGASDS 302
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + T + + + + L+ + K
Sbjct: 303 LKAGFARDAYVTVPAGAKVEPVWTPQQPLVAPIAAQDTVGALRVLVDGK 351
>gi|294501138|ref|YP_003564838.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium QM B1551]
gi|294351075|gb|ADE71404.1| D-alanine-D-alanine carboxypetidase [Bacillus megaterium QM B1551]
Length = 388
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 89/346 (25%), Positives = 148/346 (42%), Gaps = 12/346 (3%)
Query: 3 QFLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ LV+I + L + + L++ +TG ++ E + PAS+TK
Sbjct: 7 KLLVVIFLFPLMTQPVLAAEKKNSELADSARSAILIERDTGKILYEKNSNQELPPASMTK 66
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT ++ L + K L + S+ A+ S + G MT+++ LK + + S ND
Sbjct: 67 IMTMILIMEALDKGKITLKDKVRASEYAASMGGSQIFLEPGEEMTVNDLLKGIAIGSGND 126
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
++A+AE L +E+KFV MN +K LGL+ T F N G+ HY+TA DMA++ +
Sbjct: 127 ASMAMAEYLAGSEEKFVAKMNQKAKELGLTHTQFQNPTGLPVENHYSTAHDMAMMGRELL 186
Query: 179 TDFPQYMHYFQI----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + + K NTN V + G DG+KTGFT + + + A+A +
Sbjct: 187 KYEKIINYTSKYEAYLRTDTDKKFWLVNTNRLVKFYPGVDGLKTGFTGQAKYCLTATAKK 246
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVP 290
G+ ++AV+ GA RN +L F T + D + +
Sbjct: 247 GNMRVLAVVFGASTPKDRNNQVTKMLDYAFSQYTTKPLYKKGDVITKIDVNKGSEDQVTA 306
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
SE + K+ E K E +K + KK
Sbjct: 307 VTSEPISVLLKKGNAAKDVKTEVKMNEKLNAPIQKGDKIGTLTIKK 352
>gi|260777151|ref|ZP_05886045.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260606817|gb|EEX33091.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 388
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 102/347 (29%), Positives = 151/347 (43%), Gaps = 18/347 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPF--------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ ++ A S F + T Y L+D NTG V+ E + N
Sbjct: 1 MKKTFLLKAALFSSIAVTFNAIAAPTIIPEPPTLGAKGYVLIDYNTGQVLVEKNANTKLN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALK 109
PASLTKLMTAYV +K L + ISKNA S + G+T+ L + +
Sbjct: 61 PASLTKLMTAYVAGQEVKAGNITLDDQVVISKNAWAKNFPDSSKMFIEVGTTVPLMDLYR 120
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
LIV+S ND +VAIAE + +E FV MN+ ++ LGL T + N HG+ +G Y+T D
Sbjct: 121 GLIVQSGNDASVAIAEYVAGSEGAFVNLMNSWAEKLGLENTAYTNPHGLDSNGLYSTPMD 180
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNI 228
+A L I D P + G N N + DGMKTG+T +G+++
Sbjct: 181 IAKLGQAIIRDLPDIYPLYSETSYTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSL 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
SA GD LIAV++GA +R S LLS GF + E
Sbjct: 241 TTSATSGDMRLIAVVMGASSTKSRESESKQLLSYGFRFFETVSPTKAGDTVTEAKVWMGE 300
Query: 289 VPNISEEV------CTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+S V + +++ ++ + + EK+ +
Sbjct: 301 QDQLSVGVNEDIYMTLPKGNAAKLTAEVEFDRELVAPITEGEKVGTI 347
>gi|303238776|ref|ZP_07325308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
cellulolyticus CD2]
gi|302593655|gb|EFL63371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
cellulolyticus CD2]
Length = 384
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 90/340 (26%), Positives = 156/340 (45%), Gaps = 5/340 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M+ V + +A+ + + P AE + L++ +TG V+ E + PAS+TK+
Sbjct: 7 MKFLSVFLLIAIFTTMHPLNIYAEFESTAGSAILIEASTGQVLYEKNSEVSMPPASITKV 66
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT + F + + A T +++S+ A + S + GS ++ + + + + SAND
Sbjct: 67 MTLLLGFEAISKGTAKWTDLVSVSEKAWKMEGSKMFLQVGSKVSYRDIIMGISIDSANDG 126
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+AE LC +E FV MN +K +GL + F N G+ Q GH TA+D+ ILS +
Sbjct: 127 CIALAEYLCGSENAFVSAMNEKAKEIGLKNSTFKNCTGLPQEGHRLTAKDIVILSRYLIQ 186
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
++P+ + + N N +G + GADG+KTG+T +G+ + A+A Q L
Sbjct: 187 NYPEILEIESKTEFTFNDIRQFNRNPLLGVYEGADGLKTGWTEEAGYCLAATAKQNGIRL 246
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKT--DRKKINYIIK--DFYQQNLSNEVPNISEE 295
IAV+L D R LL+ GF N D KK I+ + ++ + +
Sbjct: 247 IAVVLNTKDEKERQIAGQELLTYGFKNFKFLDYKKSGDIVDNINIENGKKTSTPLKLDND 306
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + +K+ +S K
Sbjct: 307 IKVLIPISREKDLKTVISKNSQSLIAPINAGVSAGKLEVK 346
>gi|251789994|ref|YP_003004715.1| beta-lactamase [Dickeya zeae Ech1591]
gi|247538615|gb|ACT07236.1| Beta-lactamase [Dickeya zeae Ech1591]
Length = 402
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 86/337 (25%), Positives = 152/337 (45%), Gaps = 11/337 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + + L+D+ +G V+AE+ D +PASLTK+M++YV+
Sbjct: 20 VLMVVSSGLRAEQTPPPPQIDAKAFILIDSASGRVLAESNADTRLDPASLTKIMSSYVIG 79
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIA 120
+K K +T+ K+A + K G +++ + K ++++S ND +
Sbjct: 80 QAIKVGKIKPEDKVTVGKDAWATGNPSLRGSSLMFLKPGDQISVSDLNKGMVIQSGNDAS 139
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+A+ + ++ FV MN + NLGL+ THF+ HG+ G Y+TARDMA L+ + D
Sbjct: 140 IALADYVAGSQDAFVSLMNQYALNLGLTNTHFLTVHGLDTPGQYSTARDMARLTQALIRD 199
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P K + PN N L DG+KTG+T +G ++VASA+ GD L
Sbjct: 200 VPSEYALHSEKEFTFNNIRQPNRNRLLWSGNLRVDGVKTGYTDGAGHSLVASAVDGDMRL 259
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE 295
I+V+LGA R + S LL+ GF + + + ++++
Sbjct: 260 ISVVLGAPSDAVRFRESEKLLTWGFRFFETATLVRSDTPFTTHRVWFGSEKQARLGVAQD 319
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N ++ + +K ++
Sbjct: 320 AALTVPKGQTKNLKVSFTLAQPQLKAPLKKGQVVGTI 356
>gi|290473971|ref|YP_003466845.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
[Xenorhabdus bovienii SS-2004]
gi|289173278|emb|CBJ80053.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
[Xenorhabdus bovienii SS-2004]
Length = 401
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 94/346 (27%), Positives = 154/346 (44%), Gaps = 14/346 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
++ F V + + L + + A Y L+D +G ++A + PD +PASLT
Sbjct: 10 IKSFTVGLGIFWLMGVNTYAMDEPAAPEIDAKSYILMDYASGKILASHNPDERLDPASLT 69
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
K+MT+YVV +K K +T+ K+A K G + + + + +
Sbjct: 70 KVMTSYVVGQSIKSGKISTEDQVTVGKDAWATGNPALKGSSLMFLKPGDRVKVIDLNRGI 129
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+++S ND ++A+A+ + ++ FV MN SK LGL THF HG+ G Y+TARDMA
Sbjct: 130 VIQSGNDASIALADYVAGSQDAFVDLMNKYSKTLGLENTHFKTVHGLDAAGQYSTARDMA 189
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVA 230
+LS + D P+ + K + PN N + DG+KTG T +G+N+VA
Sbjct: 190 LLSQAMIRDVPEEYALNKEKEFTFNNIRQPNRNRLLWNQNMNVDGVKTGHTSGAGYNLVA 249
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLS 286
SA +G LI+V+LGA R S +LS GF + + + + S
Sbjct: 250 SAAEGSMRLISVVLGAPSDRMRFSDSEKILSWGFRFYEASTPLKASDTLVTERVWFGTRS 309
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++ T N + + S K ++
Sbjct: 310 EVALGVEKDTAVTVPRGQANNLKASFTLTQTSLEAPLAKNQVVGTV 355
>gi|254000240|ref|YP_003052303.1| beta-lactamase [Methylovorus sp. SIP3-4]
gi|253986919|gb|ACT51776.1| Beta-lactamase [Methylovorus sp. SIP3-4]
Length = 378
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 91/336 (27%), Positives = 147/336 (43%), Gaps = 6/336 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R F ++ + L+ + + + Y L D N+ IA+ D PASLTKLMT
Sbjct: 6 RIFTLVATVCSLTVQAAEIPPPPSLAVKSYVLRDFNSQSTIAQQAGDERVEPASLTKLMT 65
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
AY+ F +K LT + IS A + S + +T+D L +I++S ND ++
Sbjct: 66 AYLSFKAVKNGHLQLTQTLPISIKAWKVEGSKMFVEPNRPVTVDELLHGMIIQSGNDASI 125
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+AE + TE+ F MN + LG+ THFMNA G+ HYTTA D+++L+ + DF
Sbjct: 126 ALAEGIAITEEAFADLMNKEAARLGMKNTHFMNATGLPDPQHYTTAYDLSLLASALIRDF 185
Query: 182 PQYMHY-FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P+ + K PN N + DGMKTG T +G+ +++SA +G+ LI
Sbjct: 186 PEDYKRLYSQKQYSYNNITQPNRNRLLWLDPYVDGMKTGHTKTAGYCLISSAKRGETRLI 245
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEV 296
+V+LG + R S LL+ GF ++ + + ++
Sbjct: 246 SVVLGTPSDSARATESQKLLNYGFQFYESHLVYKRGQPINQLKVWKGQDNLVAATVPTDL 305
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + + K + +
Sbjct: 306 SITLPKGEYARVKAKVTSRQP-LIAPISAGQDVGTI 340
>gi|228998860|ref|ZP_04158445.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus mycoides Rock3-17]
gi|228760876|gb|EEM09837.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus mycoides Rock3-17]
Length = 386
Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats.
Identities = 87/320 (27%), Positives = 146/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ E P+ PAS+TK+MT ++ +++ K L + S+
Sbjct: 31 AEEASSAIVIEQDTGKVLFEKSPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASE 90
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 91 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 150
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DM+I+ + ++ K
Sbjct: 151 LGLKNTHFQNPTGLPAKDHYSTAYDMSIMAKELMKYPLIRKYTGKYEDYLRENTEKKFWL 210
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 211 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 270
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F T +K K + + + S+ V K+ N + +E +
Sbjct: 271 DYAFGQYTTKKLYKRGEKIQTVKVGKGKKEKVDLVSSDNVSLLMKKGENMDKVKQEVIAE 330
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 331 KKVKAPIKKGDALGTLVIKK 350
>gi|21241435|ref|NP_641017.1| penicillin-binding protein 6 [Xanthomonas axonopodis pv. citri str.
306]
gi|21106773|gb|AAM35553.1| penicillin-binding protein 6 [Xanthomonas axonopodis pv. citri str.
306]
Length = 401
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 86/320 (26%), Positives = 154/320 (48%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A
Sbjct: 49 SKSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAW 108
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 109 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 168
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N
Sbjct: 169 AKIGMKDSYFVNAHGLSAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSN 228
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+
Sbjct: 229 RNRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNW 288
Query: 263 GFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + M+ K+
Sbjct: 289 GFRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNL 348
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ +++ +K + K
Sbjct: 349 QAPIKQGQQVGTVKVSLDGK 368
>gi|78046281|ref|YP_362456.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|289667540|ref|ZP_06488615.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas
campestris pv. musacearum NCPPB4381]
gi|78034711|emb|CAJ22356.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 401
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 86/320 (26%), Positives = 154/320 (48%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A
Sbjct: 49 SKSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAW 108
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 109 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 168
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N
Sbjct: 169 AKIGMKDSYFVNAHGLSAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSN 228
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+
Sbjct: 229 RNRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNW 288
Query: 263 GFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + M+ K+
Sbjct: 289 GFRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNL 348
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ +++ +K + K
Sbjct: 349 QAPIKQGQQVGTVKVSLDGK 368
>gi|323498490|ref|ZP_08103483.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326]
gi|323316379|gb|EGA69397.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326]
Length = 385
Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats.
Identities = 94/347 (27%), Positives = 145/347 (41%), Gaps = 14/347 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR+ + + + F + Y L+D +TG V+ E D NPAS
Sbjct: 1 MRKPFFAVTLLTSVSFAGFAAPTIVPDPPVIGAKGYILMDYHTGAVLVEKNADSQLNPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMTAYV + L +TIS+ A S + G+ + L + + LI
Sbjct: 61 LTKLMTAYVAGQEVANGNIGLDDQVTISERAWAKNFPDSSKMFIEVGTQVALSDLYRGLI 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ + LGL + F N HG+ Y+T RD+A
Sbjct: 121 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAAKLGLENSAFSNPHGLDSDALYSTPRDIAT 180
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
LS I D P + + G N N L DGMKTG+T +G+++ S
Sbjct: 181 LSQAIIRDLPTIYPLYSERAFTYNGITQYNRNGLLRDRSLHVDGMKTGYTSGAGYSLATS 240
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSN 287
A G+ LI+V++G+ +R S LLS GF + +
Sbjct: 241 ATNGNMRLISVVMGSSSTKSRESESKQLLSYGFRFFDTIAPAEAGETLSEVKVWMGQQDS 300
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
I+ T + + + + + K ++ + +
Sbjct: 301 LPVGIATNSYLTLSKGDSDKLKAEIETN-GDLTAPIAKGAIVGSVVY 346
>gi|294627617|ref|ZP_06706199.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292597969|gb|EFF42124.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 401
Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 86/320 (26%), Positives = 154/320 (48%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A
Sbjct: 49 SKSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAW 108
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 109 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 168
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N
Sbjct: 169 AKIGMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGNIKQSN 228
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+
Sbjct: 229 RNRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNW 288
Query: 263 GFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + M+ K+
Sbjct: 289 GFRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNL 348
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ +++ +K + K
Sbjct: 349 QAPIKQGQQVGTVKVSLDGK 368
>gi|209886488|ref|YP_002290345.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha
carboxidovorans OM5]
gi|209874684|gb|ACI94480.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha
carboxidovorans OM5]
Length = 492
Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 112/322 (34%), Positives = 176/322 (54%), Gaps = 5/322 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R +L+ IA A+ +++ + + Y L+D ++G V+ PW PASLTK+MT
Sbjct: 13 RIWLIAIAAALSLSLWARPA-----QAEAYLLIDASSGKVLQATNATQPWYPASLTKIMT 67
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
AYV S +K+ + L T +T+S NA PS F G+ +T+DNALK+++VKSAND+AV
Sbjct: 68 AYVTLSAVKQGRINLDTLLTVSPNALSQAPSKMGFPAGTQVTVDNALKMMMVKSANDMAV 127
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+AE + + F MN T++ LG++ TH++N +G+ ++ARD+ ILS D
Sbjct: 128 VLAEGVGGSVDGFSALMNETARQLGMTQTHYVNPNGLPDDRQISSARDLGILSRAFYRDL 187
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P+Y +Y + G++ + N N +G + GADG+KTGF CASGFN+VASA + D+ LIA
Sbjct: 188 PEYQYYAHLPGIKFGRRITHNFNKLIGRYPGADGLKTGFICASGFNLVASATRNDRHLIA 247
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301
V+LGA R +A LL GF + + PN+ ++VC +
Sbjct: 248 VVLGASSSAQRTVKAAQLLEKGFNGSKLAWLKPSLGTVEQLPPVDALPPNLRDQVCGPHR 307
Query: 302 EIINYNTQMKEAKDKESHFIDF 323
+ + + + + D
Sbjct: 308 KRPAAEDEDDDIEITLDNQSDV 329
>gi|221134237|ref|ZP_03560542.1| D-alanyl-D-alanine carboxypeptidase [Glaciecola sp. HTCC2999]
Length = 385
Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 97/343 (28%), Positives = 158/343 (46%), Gaps = 12/343 (3%)
Query: 1 MRQFLV---IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++ L+ I + ++ + A + Y LLD NTG VIAE D PASLT
Sbjct: 1 MQKLLIVWSFICFSFVAQAVVIIPPAPSVAAKGYILLDANTGDVIAEQNADMQLAPASLT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVK 114
K+MT YV+ L+ LT + IS+NA S + G+ +++ + + ++V+
Sbjct: 61 KIMTMYVIGQELQAGNIALTDEVIISENAWAKNFPDSSKMFIEVGTRVSVSDLMHGIVVQ 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND VA+AE + +E+ F MN + LG++AT+F+NAHG+ H+T+ RDMA+LS
Sbjct: 121 SGNDACVAMAEHIAGSEEAFASMMNAHAAKLGMTATNFVNAHGLHDSQHFTSPRDMAVLS 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAI 233
+ D P+ + K + N N + L DG+KTG T +G++++ SA
Sbjct: 181 RALIKDNPEEYELYSKKEFTYNNIRQYNRNSLLWDKALSVDGIKTGHTSDAGYSLITSAT 240
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEV 289
QGD L++V++G R + LL GF Y +
Sbjct: 241 QGDMRLVSVVMGTDSERARKVENKKLLRYGFRFFESISPYQAGHSFVAHRIYMGDRKTID 300
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
I+++V T N + D+ +K ++
Sbjct: 301 LGITQDVSLTIPRGQAKNLKANYIIDR-HLEAPLKKGEVVGVL 342
>gi|228992815|ref|ZP_04152740.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus pseudomycoides DSM 12442]
gi|228766864|gb|EEM15502.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus pseudomycoides DSM 12442]
Length = 386
Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 87/320 (27%), Positives = 146/320 (45%), Gaps = 8/320 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ +TG V+ E P+ PAS+TK+MT ++ +++ K L + S+
Sbjct: 31 AEEASSAIVIEQDTGKVLFEKSPNEKLPPASMTKIMTMLLIMEQVEKGKLKLEDKVRASE 90
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S + G MT++ LK + + S ND +VA+AE + +E+ FV MN +K+
Sbjct: 91 HAASMGGSQIFLEPGEEMTVNEMLKGIAIASGNDASVAVAEHIAGSEEGFVNMMNKKAKD 150
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LGL THF N G+ HY+TA DM+I+ + ++ K
Sbjct: 151 LGLKNTHFQNPTGLPAKDHYSTAYDMSIMAKELMKYPLIRKYTGKYEDYLRENTEKKFWL 210
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G DG+KTGFT + + + ASA + +I+V++GA RN LL
Sbjct: 211 VNTNKLVRFYPGVDGVKTGFTTEAKYCLTASAEKNGMRVISVVMGAPTSKERNNQVTKLL 270
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDK 316
F T +K K + + + S+ V K+ N + +E +
Sbjct: 271 DYAFGQYTTKKLYKRGEKIQTVKVGKGKKEKVDLVSSDNVSLLMKKGENMDKVKQEVIAE 330
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K L + KK
Sbjct: 331 KKVKAPIKKGDALGTLVIKK 350
>gi|113460464|ref|YP_718526.1| penicillin-binding protein [Haemophilus somnus 129PT]
gi|112822507|gb|ABI24596.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Haemophilus somnus 129PT]
Length = 388
Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 94/349 (26%), Positives = 156/349 (44%), Gaps = 14/349 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-----SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ + + ++S + Y L+D ++G V+A PD +PAS
Sbjct: 1 MKKTKIALMSGLISLPALSQDIQYGIASPELSAQSYILMDYHSGAVLAAFNPDQRQHPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLI 112
LTK+MT+YVV +K+ K LT +TI ++A S +++ + + ++
Sbjct: 61 LTKMMTSYVVGDAIKQGKISLTDTVTIDESAWGKNFPGSSKMFLNLNQQVSVADLNRGIV 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND VAIAE + +E+ F++ MN GL T+FM HG+ Y++ARDMAI
Sbjct: 121 IVSGNDACVAIAEHIAGSERNFIELMNKYVAKFGLKNTNFMTVHGLDDDNQYSSARDMAI 180
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
+ I D P+ + K K N N + DGMKTG T +G+N+VAS
Sbjct: 181 IGRHIIHDLPEEYKIYAEKEFTFNKIKQHNRNGLLWDKSIKVDGMKTGHTNKAGYNLVAS 240
Query: 232 A-IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLS 286
A + LI+V++G R S LL GF N K + + + Y N S
Sbjct: 241 AVNNNNMRLISVVMGVATHKGREIESKKLLQWGFANFETFKSLQANQSIVEEKVYYGNTS 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ E+ T + + + + +++ K ++ I +
Sbjct: 301 KVQLGVLEDAYITLPKGRQNDVKTRYELNQKMLTAPLAKGQIVGKIIYQ 349
>gi|166710542|ref|ZP_02241749.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas oryzae
pv. oryzicola BLS256]
Length = 401
Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 86/320 (26%), Positives = 153/320 (47%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A
Sbjct: 49 SKSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAW 108
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 109 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 168
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ ++F+NAHG+ GH++TA D+A+L + D+P Y +IK ++ K N
Sbjct: 169 AKIGMKDSYFVNAHGLTAEGHHSTAYDLAMLGRAMVRDYPDTYAYNKIKEFQVGSIKQSN 228
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+
Sbjct: 229 RNRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNW 288
Query: 263 GFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + M+ K+
Sbjct: 289 GFRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNL 348
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ +++ +K + K
Sbjct: 349 QAPIKQGQQVGTVKVSLDGK 368
>gi|238897881|ref|YP_002923560.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229465638|gb|ACQ67412.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 384
Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 89/339 (26%), Positives = 155/339 (45%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L +A + + + + K Y L+D N+G ++AE D PASLTK+MT+YV
Sbjct: 3 LTTLAYSDSILLSNLIPVPPEIKAVSYILMDYNSGKILAEKNADEHRMPASLTKMMTSYV 62
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAND 118
+ +K +K + +T+ K+A K G +++ + + ++S ND
Sbjct: 63 IGQAIKSEKIGVNDIVTVGKDAVSTGNPEFKGSSLMFLKPGDQVSVAQLTRGITLQSGND 122
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
VA+A + ++ FV MN ++ +GL THF N HG+ G YT+ARDMA++ +
Sbjct: 123 ACVAMANYVAGSQDSFVHLMNAYAQEMGLKNTHFKNVHGLDSEGQYTSARDMALMGRALI 182
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P ++ K + N N L DG+KTG T A+G+N+VASA QG
Sbjct: 183 HDVPDEYAIYKEKEFTFNQIRQLNRNGLLWDKSLNVDGIKTGHTNAAGYNLVASATQGPM 242
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNIS 293
LI+V+LG R S LLS GF + + + + +++ +
Sbjct: 243 RLISVVLGGRTFKEREAESKKLLSWGFRFFETVEPLKAGDVFASRPVWFGDVNTAQLGVD 302
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + T + + ++ ++ +K ++ +
Sbjct: 303 KNIYLTLPKDQGKHLKLSFVLNQSELRAPLKKNQIVGSI 341
>gi|332993383|gb|AEF03438.1| D-alanyl-D-alanine carboxypeptidase [Alteromonas sp. SN2]
Length = 394
Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 94/336 (27%), Positives = 156/336 (46%), Gaps = 10/336 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F++ A+ + +N A + + L D TGHVIA D PASLTK+MT Y
Sbjct: 17 FMLFSALVLSANAAVVTPPAPSVAAEGFLLTDFETGHVIASKNADMQLAPASLTKIMTIY 76
Query: 64 VVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
V+ L+ L+ +TIS+NA S + G+ +++ + L+ ++V+S ND
Sbjct: 77 VIGKELQAGNISLSDEVTISENAWAKKFPDSSKMFIEVGTQVSVSDLLRGIVVQSGNDAC 136
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + ++ F MN ++ +G+++++F+NAHG+ HYTT RDMA+LS + +
Sbjct: 137 VAMAEHVAGSQAAFASMMNAHAQAIGMTSSNFVNAHGLHDPDHYTTPRDMAVLSRALIAE 196
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+ + K G K N N L DG+KTG T +G++++ SA QGD L
Sbjct: 197 TPEMYKIYSEKEFTFNGIKQYNRNSLLWDKSLNVDGIKTGHTSDAGYSLITSASQGDMRL 256
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF------YQQNLSNEVPNIS 293
I+V++G R + LL GF + + + N S
Sbjct: 257 ISVVMGTDSERARKVENKKLLKYGFRFYETLTPYHAGDSFVAHRIYMGDRETVDLGINQS 316
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + N + K E+ + + L
Sbjct: 317 TPITIPRGQAANLEANFELDKKLEAPLAKGQVVGTL 352
>gi|289663962|ref|ZP_06485543.1| D-alanyl-D-alanine carboxypeptidase precursor [Xanthomonas
campestris pv. vasculorum NCPPB702]
Length = 371
Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats.
Identities = 86/320 (26%), Positives = 154/320 (48%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A
Sbjct: 19 SKSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAW 78
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 79 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 138
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N
Sbjct: 139 AKIGMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGSIKQSN 198
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+
Sbjct: 199 RNRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNW 258
Query: 263 GFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + M+ K+
Sbjct: 259 GFRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNL 318
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ +++ +K + K
Sbjct: 319 QAPIKQGQQVGTVKVSLDGK 338
>gi|24372747|ref|NP_716789.1| D-alanyl-D-alanine carboxypeptidase [Shewanella oneidensis MR-1]
gi|24346818|gb|AAN54234.1|AE015560_7 D-alanyl-D-alanine carboxypeptidase [Shewanella oneidensis MR-1]
Length = 390
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 97/348 (27%), Positives = 156/348 (44%), Gaps = 12/348 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L+I ++++ + A T Y L+D +G +IAE NPASLTK
Sbjct: 8 IKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAEENAYESLNPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K +TISKNA S + G T+ + + + +I++S
Sbjct: 68 MMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDLNRGIIIQS 127
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ SK LG+ ++F N+HG+ H TTA DMA+L
Sbjct: 128 GNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSENHKTTAYDMALLGA 187
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQ 234
+ D P+ + K G K N N + + DG+KTG T +G+N+VASA +
Sbjct: 188 ALIRDVPEEYRIYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 247
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
LI+V++G R S LL+ GF QQ + +
Sbjct: 248 DGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETVTPYKAGDSFVTQQIWYGDKSTVDL 307
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ + + K ++ E + L ++ K
Sbjct: 308 GVATDTPITVSRGRAKDLKANFELTKPLDAPLKKGETVGRLYFQLDGK 355
>gi|319651421|ref|ZP_08005550.1| DacF protein [Bacillus sp. 2_A_57_CT2]
gi|317396952|gb|EFV77661.1| DacF protein [Bacillus sp. 2_A_57_CT2]
Length = 387
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 88/352 (25%), Positives = 148/352 (42%), Gaps = 17/352 (4%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIAETNKL------PYYTLLDTNTGHVIAENYPDHPWNP 53
M++ + ++ + +L + IF A + L++ +TG ++ E P
Sbjct: 1 MKRLVSLMLITLLMATIFVPSGFARESSADLADNVKSAILIERDTGSILYEKNSGEQLPP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS+TK+MT ++ + E K I S+ A+ S + G MT L+ + +
Sbjct: 61 ASMTKVMTMLLIMEAIDEGKLSWDEKIRTSEYAASMGGSQIFLEPGEEMTTKQMLQGIAI 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND +VA+AE + +E+ FV+ MNN +K LGL T+F N G+ HY+TA DMAI+
Sbjct: 121 GSGNDASVAMAERIAGSEEAFVEMMNNKAKELGLKNTNFQNPTGLSAKEHYSTAHDMAIM 180
Query: 174 -----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ TDF + ++ K NTN V + G DG+KTGFT + + +
Sbjct: 181 AKELLKYEKITDFTGTYEAY-LREDTDKKFWLVNTNRLVRFYPGVDGLKTGFTSEAKYCL 239
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQN 284
A+A + +IAV+ GA RN +L F +
Sbjct: 240 TATAEKDGMRVIAVVFGAPTSKERNAQVTKMLDYAFSQYKTHPMYERNHVLGKVAVSKGE 299
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
SE + K+ + ++ ++ +K + KK
Sbjct: 300 KKMVEALTSEPISLLTKKGESIEEIEQKVTLNKNIKAPVQKGDQIGTLTLKK 351
>gi|261343387|ref|ZP_05971032.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii
DSM 4541]
gi|282568528|gb|EFB74063.1| D-alanyl-D-alanine carboxypeptidase DacA [Providencia rustigianii
DSM 4541]
Length = 401
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 92/339 (27%), Positives = 155/339 (45%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L ++ + S +A + L+D ++G ++A ++PD +PASLTK+MT+YV
Sbjct: 17 LSMLVVMSSSAYAAQTPVAPQIDAKAFVLMDYDSGKILASSHPDERLDPASLTKIMTSYV 76
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAND 118
V +K K +T+S+ A K +++ + K ++++S ND
Sbjct: 77 VGQAVKAGKITPQDMVTVSEAAWATGNPVLKGSSLMFLKPKDQVSVLDLNKGIVIQSGND 136
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
++A+AE + +++ FV MN+ + +GL+ THF HG+ G Y+TARDMA+L+ +
Sbjct: 137 ASIALAEYVAGSQESFVDLMNSYVQKIGLTNTHFKTVHGLDSEGQYSTARDMAVLAQALI 196
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N L DG+KTG T +G N+VASA G
Sbjct: 197 RDVPDEYILHKEKEFTFNNIRQPNRNRLLWSQNLKVDGVKTGHTSGAGHNLVASATDGPM 256
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I + + ++S +
Sbjct: 257 RLISVVLGAPSDKVRFSESEKLLTWGFRFFETVTPIKGDAVLQKQRVWFGDISEVPLGVE 316
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++V T + N ++ D +S +
Sbjct: 317 KDVAVTIPKGQLQNLKVDIKLDSDSLEAPLALNQKVGTI 355
>gi|150390291|ref|YP_001320340.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
metalliredigens QYMF]
gi|149950153|gb|ABR48681.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
metalliredigens QYMF]
Length = 387
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 90/347 (25%), Positives = 152/347 (43%), Gaps = 16/347 (4%)
Query: 2 RQFL------VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
++FL +I+ + N L+ + L+D TG V+ E PAS
Sbjct: 4 KKFLKLMSGCLILMTVLALNTTTLLAQPFELQSKAGILIDAATGEVLYEKNIHESLPPAS 63
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MT + L + L + +S+ AS + + G T++ +K + ++S
Sbjct: 64 VTKIMTMLLTMEALDTNRITLNDKVVVSERASSMGGTQLYLEPGEVKTVEELMKGIAIRS 123
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND VAI E + +E FVQ MN +K LG+ T F+N +G+ GH T+ D+A++S
Sbjct: 124 ANDACVAIGEHISGSEDAFVQKMNERAKELGMKNTTFINTNGLPAEGHVTSVYDIALMSK 183
Query: 176 RIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ +P + + ++ NTN + T+ GA G+KTGFT A+ +
Sbjct: 184 ELL-KYPDVQKWLTTWMDTVVVGKRESTQELVNTNRLIRTYKGATGLKTGFTQAALHCLS 242
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLS 286
ASA +G+ + IAV+L A R +A LL GF N + + Q+
Sbjct: 243 ASATRGNNTFIAVVLAAPTSQVRFSEAAQLLDFGFANYNTIEIAERDVFIGNINIQKGQE 302
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ V +++E + + KE + K + I
Sbjct: 303 SIVRGVAKEDLKVLVKKGEEDQVQKEVILPQFANAPVLKGDKMGEVI 349
>gi|163857632|ref|YP_001631930.1| penicillin-binding protein precursor [Bordetella petrii DSM 12804]
gi|163261360|emb|CAP43662.1| penicillin-binding protein precursor [Bordetella petrii]
Length = 371
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 91/336 (27%), Positives = 154/336 (45%), Gaps = 11/336 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
M S +A + LLD +G +A D PASLTK+MTAY+VF L++
Sbjct: 1 MASLASAQAQVAPPVTAKAWMLLDATSGQEMASFNADTRVEPASLTKVMTAYLVFQALRD 60
Query: 72 KKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ +T+S A + P S + G +++++ L L+V+S ND A+ +AE++
Sbjct: 61 GRLSTQQLVTVSTRAWKVAPGSSKMFLEPGKRVSVNDLLFGLLVQSGNDAAIVLAEAVSG 120
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-YF 188
+ + FVQ MN + +GL THF + HG+ G Y+TARD+A+L+ R+ D+P Y
Sbjct: 121 SVEAFVQRMNQQAAQMGLRDTHFASPHGLPDPGTYSTARDLALLARRLVRDYPDLYKTYD 180
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD----QSLIAVIL 244
+ PN N + DG+KTG T A+G+ ++ASA + D + LI+V++
Sbjct: 181 SARTFTYNNISQPNRNRLLWLDPSVDGLKTGHTDAAGYCLIASAERPDGQSRRRLISVVM 240
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQ 300
G R + S LL+ GF N K ++ ++ + T
Sbjct: 241 GTASDKLRTEESRVLLNWGFQNFKTIKLYAKGQAVESPQVWKGERDTVRIGVANDAYITA 300
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + + +++ L+ + K
Sbjct: 301 PVSAEVKPVVTRRQPLVAPIAAQDQVGSLQVLVDGK 336
>gi|291550443|emb|CBL26705.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14]
Length = 390
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 90/346 (26%), Positives = 154/346 (44%), Gaps = 16/346 (4%)
Query: 1 MRQFLVIIAMAMLSN---IFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ +I + + FP + P L++ +TG V+ E D PA
Sbjct: 6 MKKGFTVILLGVFLLYRIAFPTTVVHAEEVEISAPSGILMEMSTGTVLFEKDADTARPPA 65
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK+MT ++F L+ L ++ S+ A+ S + G T+ LK + V
Sbjct: 66 SVTKIMTMLLIFDALENGTISLDDEVSTSEYAASMGGSQVFLEPGEMQTVGTLLKCISVA 125
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND V ++E +C E++FV+ MN +K LG+ T+F+N +G+ GH +ARD+A++S
Sbjct: 126 SANDACVTMSECICGNEQEFVKQMNERAKGLGMKHTNFVNCNGLDADGHEMSARDIALMS 185
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFTCASGF 226
+ T +PQ Y + I NTN + + A G+KTG T + F
Sbjct: 186 RELMTRYPQIKDYCTVWMENITHTTARGSSEFGLTNTNKLIRQYEYATGLKTGSTGKAKF 245
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ A+A + LIAVI+GA D +R K + +LL+ GF + + +
Sbjct: 246 CVSATASKNGVDLIAVIMGAEDSKSRFKDAVTLLNYGFGKCQIYNAKEQKLPEVLVKGGK 305
Query: 287 NEVPNISEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ I E E + + + + + +K +
Sbjct: 306 EDHLKIQYEEGFTYVDTEGSDLSKVEEVTEIPDEVKAPVKKGDTVG 351
>gi|127513867|ref|YP_001095064.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella loihica PV-4]
gi|126639162|gb|ABO24805.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella loihica PV-4]
Length = 390
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 91/347 (26%), Positives = 157/347 (45%), Gaps = 12/347 (3%)
Query: 2 RQFLVIIAMAMLSNIFPF--LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ L++ ++++ + A + L+D N+G +IAE NPASLTK+
Sbjct: 9 KTLLLVSSLSITAANAAPVVTPDAPKVAAKAFILMDYNSGQIIAEENAYESLNPASLTKM 68
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
MT+YV+ +K +TISKNA S + G ++++ + +I++S
Sbjct: 69 MTSYVIGHEIKVGNISPQDKVTISKNAWSKNFPDSSKMFIEVGKQVSVEELNRGIIIQSG 128
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H TTA DMA+L
Sbjct: 129 NDACVAMAEHIAGTEDGFVDLMNSWAKQLGMRDSYFENSHGLDSENHKTTAYDMALLGAA 188
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ D P+ + K G K N N L DG+KTG T +G+N+V SA +
Sbjct: 189 LIRDVPEEYRVYSEKSFTYNGIKQYNRNGLLWDKSLNVDGIKTGHTSGAGYNLVTSATKD 248
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPN 291
L++V+LG + R S LL+ GF + + + +
Sbjct: 249 GMRLVSVVLGTASESARKAESKKLLNYGFRFFETITPYKAGDSFVTQKIWYGDRESVDLG 308
Query: 292 ISEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + + ++ + N + K+ + E + + ++ K
Sbjct: 309 VLTDTPITISRGQAKNLEANYELNKELTAPIAKGETVGRIYFQLNGK 355
>gi|262403437|ref|ZP_06079995.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
gi|262349941|gb|EEY99076.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
Length = 389
Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats.
Identities = 97/344 (28%), Positives = 151/344 (43%), Gaps = 17/344 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + + Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVKFSMACMAFVPTLGFSALSVIPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + GS + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHAQDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDNPNLYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P+ + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGQAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNE 288
A GD LI+V++G+ R S LLS GF I NE
Sbjct: 245 ATSGDMRLISVVMGSKSTKIREAESKQLLSYGFRFFETVSPHQKETVIQHQRIWYGDKNE 304
Query: 289 VPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V S + + + ++ N ++ K E+ + + +
Sbjct: 305 VALGSADTIYLTLPRSDVKKLNAVIQLDKTLEAPIAKGDPVGAI 348
>gi|239996931|ref|ZP_04717455.1| D-alanyl-D-alanine carboxypeptidase [Alteromonas macleodii ATCC
27126]
Length = 394
Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats.
Identities = 99/342 (28%), Positives = 151/342 (44%), Gaps = 13/342 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
FLVI + +N A + + L D TGHVIA D PASLTK+MT Y
Sbjct: 17 FLVIGTLLHTANAAVVTPPAPSVAAEGFLLTDFETGHVIASKNADMQLAPASLTKIMTIY 76
Query: 64 VVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
V+ L+ L +TIS+NA S + G+ +++ + L+ ++V+S ND
Sbjct: 77 VIGKELQAGNISLDDEVTISENAWAKKFPDSSKMFIEVGTQVSVRDLLRGIVVQSGNDAC 136
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + +E F MN + +LG+S +H++NAHG+ HYTT RDMAILS + +
Sbjct: 137 VAMAEHVAGSESAFASMMNAHTASLGMSGSHWVNAHGLHDPDHYTTPRDMAILSRALIAE 196
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+ + K G K N N L DG+KTG T +G++++ SA QG L
Sbjct: 197 TPEMYKIYSEKEFTYNGIKQYNRNSLLWDKSLNVDGIKTGHTSDAGYSLITSAEQGGMRL 256
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEV---PNIS 293
I+V++G R + LL GF + V N S
Sbjct: 257 ISVVMGTDSERARKVENKKLLKYGFRFYETLTPYQAGHSFVAHRIYMGDRETVDLGINQS 316
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + N + E+ K ++ +
Sbjct: 317 TPITIPRGQAANLEANFELDDKLEAPLA---KGQVVGKLYLQ 355
>gi|154502522|ref|ZP_02039582.1| hypothetical protein RUMGNA_00335 [Ruminococcus gnavus ATCC 29149]
gi|153796918|gb|EDN79338.1| hypothetical protein RUMGNA_00335 [Ruminococcus gnavus ATCC 29149]
Length = 401
Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats.
Identities = 96/366 (26%), Positives = 157/366 (42%), Gaps = 31/366 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS--------------------IAETNKLPYYTLLDTNTGH 40
M++ L ++ A+LS + + P L++ +TG
Sbjct: 1 MKRVLAVLLSAVLSLSVAVVPGIQTLAEEPDAAQKTEGQQEAEVEVQAPSAVLMEASTGA 60
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100
V+ E D PAS+TK+MT ++F L++ K L ++ S+ A+ S + G
Sbjct: 61 VLYEKDADTRRAPASVTKIMTMLLIFDALEDGKIALEDEVSTSEYAASMGGSQVFLEPGE 120
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
T ++D LK + V SAND A+AE + +E+ FV+ MN + LG+ T F N +G+
Sbjct: 121 TQSVDTMLKCISVASANDACTAMAEYIAGSEEAFVKMMNERAAGLGMKNTTFQNCNGLDT 180
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLG 212
GH TTARD+A++S + +P+ Y I I NTN V +
Sbjct: 181 EGHLTTARDIALMSRELIEKYPKIHDYCMIWMDTITHTTKKGTSEFGLSNTNKLVRQYPY 240
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
A G+KTG T + F + A+A + LIAVIL + R + + LL+ GF +
Sbjct: 241 ATGLKTGSTDEAKFCVSATAEKDGMELIAVILSGENSKQRFQDATKLLNYGFGKCQVYED 300
Query: 273 INYII-KDFYQQNLSNEVPNI--SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ K Q E ++ N K+A+ K+S +K +
Sbjct: 301 NDPPKLKPIEVQGGVKEQILCEYADTFRYLDTSGANLAGVTKKAQMKQSVKAPVKKGQKV 360
Query: 330 KNKITK 335
+ +
Sbjct: 361 GELVYE 366
>gi|300722494|ref|YP_003711784.1| D-alanyl-D-alanine carboxypeptidase [Xenorhabdus nematophila ATCC
19061]
gi|297629001|emb|CBJ89586.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
[Xenorhabdus nematophila ATCC 19061]
Length = 402
Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats.
Identities = 96/346 (27%), Positives = 156/346 (45%), Gaps = 14/346 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
++ F V +++ LS++ + Y L+D +G ++A N D +PASLT
Sbjct: 11 IKSFAVGLSVFWLSSVNVYAMDEPAVPEIDARAYVLMDYYSGKILASNNADERLDPASLT 70
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
K+MT+YV+ +K K +TI K+A K G + + + + +
Sbjct: 71 KMMTSYVIGLAVKSGKISTEDWVTIGKDAWATGNPVLKGSSLMFLKPGDRVKVIDLNRGI 130
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+++S ND ++A+A+ + ++ FV MN SK LGL+ THF HG+ G Y+TA DMA
Sbjct: 131 VIQSGNDASIALADYVAGSQDSFVDLMNQYSKTLGLTNTHFKTVHGLDAAGQYSTAHDMA 190
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVA 230
+LS + D P+ + K + PN N + DG+KTG T +GFN+VA
Sbjct: 191 LLSQAMIRDVPEEYALNKEKEFTFNNIRQPNRNRLLWNKNMNVDGVKTGHTSGAGFNLVA 250
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLS 286
SA +G LI+V+LGA R S LLS GF K + + + S
Sbjct: 251 SATEGPMRLISVVLGAPSDRMRFSDSEKLLSWGFRFYESAKPLKASDTLMTEKVWYGTHS 310
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
V + ++ N + ++ S K ++
Sbjct: 311 EAVLGVEKDTSVVVPRGQAGNLKASFTLNQASLEAPLTKNQVVGTV 356
>gi|284009241|emb|CBA76342.1| penicillin-binding protein [Arsenophonus nasoniae]
Length = 418
Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats.
Identities = 92/349 (26%), Positives = 155/349 (44%), Gaps = 20/349 (5%)
Query: 4 FLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
++I ++ S +F + A Y L+D +G V+AE D +PA
Sbjct: 28 LILITSLIFSSTLFANSNNAMQINVIPSAPNIDAEAYILIDYYSGKVLAERNADQRRDPA 87
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTK+MT+Y++ +K K + +TI +NA K G +++ +
Sbjct: 88 SLTKMMTSYIIGQTIKAGKISMNDIVTIDENAWATGNPVFKGSSLMFLKPGDRVSVSQLI 147
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ + ++S ND VA+AE + E FV+ MN+ + LGL THF+ HG+ G Y++AR
Sbjct: 148 RGINLQSGNDACVAMAEYVAGDEASFVKLMNDNVQRLGLKNTHFLTVHGLDADGQYSSAR 207
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
DMA++ + D P+ ++ K + N N L DG+KTG T A+G+N
Sbjct: 208 DMALIGQALIRDVPEEYAIYKEKEFTFNKIRQLNRNGLLWDKSLNVDGIKTGHTSAAGYN 267
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQ 283
+VASA +G+ LI+VILG R+ S LL+ GF K + ++ +
Sbjct: 268 LVASATEGNMRLISVILGGHSSKGRDAESKKLLTWGFRFFETVKPLQGGMEFASQPVWFA 327
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
N I +++ + + + K ++
Sbjct: 328 NTDQVKLGIEKDLYLIIPRGRMKDLKASYTLNNTELQAPLAKNQIVGTI 376
>gi|288549405|ref|ZP_06390668.1| hypothetical protein ENTCAN_05367 [Enterobacter cancerogenus ATCC
35316]
gi|288318989|gb|EFC57927.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
ATCC 35316]
Length = 408
Score = 209 bits (530), Expect = 6e-52, Method: Composition-based stats.
Identities = 95/339 (28%), Positives = 147/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L+ + L A + L+D +G V+AE D +PASLTKLMT+YV
Sbjct: 24 LLFLFAPTLYAAEQAAPEAPPVDARAWILMDYASGKVLAEGNADEKLDPASLTKLMTSYV 83
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K L +T+ K+A K G +++ + K +I++S ND
Sbjct: 84 VGQALKAGKIKLDDMVTVGKDAWATGNPALRGSSVMFLKPGDRVSVSDLNKGVIIQSGND 143
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + ++ F+ MN ++ LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 144 ACIALADYVAGSQDSFIGLMNGYAQRLGLTNTTFKTVHGLDAPGQFSTARDMALLGKALI 203
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P+ + K + PN N + + DGMKTG T +G+N+VASA QGD
Sbjct: 204 HDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNVNVDGMKTGTTAGAGYNLVASATQGDM 263
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LG R S LL+ GF I I + + + +
Sbjct: 264 RLISVVLGTKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFISQRVWFGDKRDVNLGAG 323
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
E T N + +K ++
Sbjct: 324 EAGSVTIPHGQLKNLKASYTLTDPQLTAPLKKGQVVGTI 362
>gi|90414079|ref|ZP_01222062.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
profundum 3TCK]
gi|90324874|gb|EAS41402.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
profundum 3TCK]
Length = 391
Score = 209 bits (530), Expect = 6e-52, Method: Composition-based stats.
Identities = 90/323 (27%), Positives = 149/323 (46%), Gaps = 9/323 (2%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ A Y L+D N+G +IAEN D +PASLTK++T+YV+ +K L
Sbjct: 28 TVVPEAPQIAAKAYILMDYNSGKIIAENNSDERLHPASLTKMLTSYVIGQEIKSGNISLD 87
Query: 78 TPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+++S NA S + G +T+ K +I++S ND A+AE + + F
Sbjct: 88 DKVSVSNNAWAKNFPGSSKMFLEPGKLVTVQELNKGIIIQSGNDACTAMAEHIAGSTDSF 147
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V+ MN +K +G+ ++HF+N HG+ H++TA DMA L+ + D P ++ K
Sbjct: 148 VELMNAWAKRIGMESSHFVNVHGLDNDDHFSTAHDMATLAQAVIRDVPDEYAIYKEKSFT 207
Query: 195 IKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
G N N L DGMKTG T +G+++VASA +G+ LI+V++G N R
Sbjct: 208 YNGITQYNRNGLLWDKSLNVDGMKTGHTDQAGYSLVASAYEGEMRLISVVMGTKSANARK 267
Query: 254 KVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
S LL+ GF + + + ++ ++E+ T + +
Sbjct: 268 AESKKLLNYGFRFFETVTPHKANETFVTEKVWMGDIDQVNLGVTEDTFVTLPRGQTKDLK 327
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
+KE K ++
Sbjct: 328 ASFVLEKE-LKAPIAKGDIVGKL 349
>gi|88860565|ref|ZP_01135203.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Pseudoalteromonas tunicata D2]
gi|88817763|gb|EAR27580.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Pseudoalteromonas tunicata D2]
Length = 387
Score = 209 bits (530), Expect = 6e-52, Method: Composition-based stats.
Identities = 95/338 (28%), Positives = 151/338 (44%), Gaps = 9/338 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ + + S + Y L+D TG VIAE PD PASLTK+MT+YV+
Sbjct: 15 LVCTVGIFSASAQIMPAPPQVNAKGYFLVDFTTGKVIAEGAPDERLAPASLTKMMTSYVI 74
Query: 66 FSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+K K +T+S+ A S + G ++++ + +I++S ND VA
Sbjct: 75 GLEIKNKNISPNDLVTVSEKAWSKNFPDSSKMFIEVGKKISVEELNRGIIIQSGNDACVA 134
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +E F MN ++ LG++ THF+N+HG+ H+TT RDMA L + D P
Sbjct: 135 MAEHIAGSESAFADLMNAHAEKLGMTNTHFINSHGLDTDEHFTTPRDMATLGGALIRDVP 194
Query: 183 QYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ K G K N N L DG+KTG T +G+++V SA +GD L+A
Sbjct: 195 DEYAIYSEKSFTFNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSLVTSATKGDMRLVA 254
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVC 297
V++G R S LL+ GF + + N I ++
Sbjct: 255 VVMGTESDRARRAESKKLLNYGFRFYETITPYKAGDTFAKQRVWMGNKEEVALGILQDTP 314
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T + + N + DK + K T++ +
Sbjct: 315 ITIQRGQSKNLKANFKLDK-TLEAPIAKGTVVGTLFLQ 351
>gi|113969331|ref|YP_733124.1| penicillin-binding protein 6 [Shewanella sp. MR-4]
gi|117919440|ref|YP_868632.1| penicillin-binding protein 6 [Shewanella sp. ANA-3]
gi|113884015|gb|ABI38067.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Shewanella sp. MR-4]
gi|117611772|gb|ABK47226.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Shewanella sp. ANA-3]
Length = 391
Score = 209 bits (530), Expect = 6e-52, Method: Composition-based stats.
Identities = 95/348 (27%), Positives = 156/348 (44%), Gaps = 12/348 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L+I ++++ + A T Y L+D +G +IAE NPASLTK
Sbjct: 9 IKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAEENAYESLNPASLTK 68
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K +TISKNA S + G T+ + + + +I++S
Sbjct: 69 MMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDLNRGIIIQS 128
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H +TA DMA+L
Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENSHGLDSENHKSTAYDMALLGA 188
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQ 234
+ D P+ + K G K N N + + DG+KTG T +G+N+VASA +
Sbjct: 189 ALIRDVPEEYRVYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 248
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
LI+V++G R S LL+ GF QQ + +
Sbjct: 249 DGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETVTPYKAGDSFVTQQIWYGDKSTVDL 308
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ + + K ++ E + L ++ K
Sbjct: 309 GVATDTPITISRGRAKDLKANFELTKPLDAPLKKGETVGRLYFQLDGK 356
>gi|311107988|ref|YP_003980841.1| D-alanyl-D-alanine carboxypeptidase [Achromobacter xylosoxidans A8]
gi|310762677|gb|ADP18126.1| D-alanyl-D-alanine carboxypeptidase DacC 1 [Achromobacter
xylosoxidans A8]
Length = 386
Score = 209 bits (530), Expect = 6e-52, Method: Composition-based stats.
Identities = 98/349 (28%), Positives = 158/349 (45%), Gaps = 13/349 (3%)
Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ +I+A A +S A + LLD +G VIA + PASLTK
Sbjct: 3 MKKLAASLIVAAACMSGAMAQTVPAPALSAKAWLLLDETSGQVIASHAATTRIEPASLTK 62
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSA 116
+MTAYVVF L +K+ T +T+S A + P S + GS +++D+ L+ L+++S
Sbjct: 63 IMTAYVVFEALSKKELSATQLVTVSTRAWKVPAGSSKMFLEPGSKVSVDDLLRGLMIQSG 122
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A+A+AE++ + + FV MN+T+ LGL AT F + HG+ Y+TA D++IL+ R
Sbjct: 123 NDAAIALAEAVSGSVEAFVARMNDTAARLGLHATRFASPHGLPDPETYSTASDLSILATR 182
Query: 177 IKTDFPQYMH-YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ- 234
D+PQ Y K PN N + DG+KTG T ++G+ IVA+A +
Sbjct: 183 FIRDYPQLYKTYDSAKQFTFNKITQPNRNRLLWLDPSVDGLKTGHTESAGYCIVATAQRP 242
Query: 235 ---GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSN 287
+ LI V++G R + S LL GF K + ++ +
Sbjct: 243 NGADQRRLITVVVGTASDKLRTQESRELLEWGFQGFNTIKLYARGQAVATPEVWKGEQDS 302
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + T + + ++ + K
Sbjct: 303 LKAGFARDAYVTVPAGAKVEPVWTPQDPLIAPIAAQSAVGAVRVLVDGK 351
>gi|167772329|ref|ZP_02444382.1| hypothetical protein ANACOL_03706 [Anaerotruncus colihominis DSM
17241]
gi|167665432|gb|EDS09562.1| hypothetical protein ANACOL_03706 [Anaerotruncus colihominis DSM
17241]
Length = 391
Score = 209 bits (530), Expect = 6e-52, Method: Composition-based stats.
Identities = 92/313 (29%), Positives = 144/313 (46%), Gaps = 3/313 (0%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L++ +TG V+ E D PAS+TK+MT +V L + L +T S+
Sbjct: 42 SLPARSAILIEQSTGRVLFEKNADEQLPPASITKVMTLLLVMEALDSGQIALGDMVTCSE 101
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A S FK G +++D+ LK + SAND +VA+AE + +E+ FV MN +
Sbjct: 102 HAQSMGGSQIWFKAGEQLSVDDLLKAAAISSANDASVALAEHVAGSEEAFVALMNEKAAQ 161
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWR-IKTDFPQYMHYFQIKGLEIKGKKYPNT 203
LG++ THF+NA G+ GH TTARD+A +S + + L + NT
Sbjct: 162 LGMTNTHFVNATGLDADGHLTTARDIAAMSRALLAYPKITEYSGTWMSELRGGATQLVNT 221
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
N V + G G+KTG T +G + ASA +G SLIAV LG+ R + LL G
Sbjct: 222 NKLVRFYDGCTGLKTGTTDGAGSCLSASATRGGLSLIAVTLGSPTSAERFSAARGLLDYG 281
Query: 264 FYNKTDRKK--INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
F N T + + + + ++ +V +SE + + ++
Sbjct: 282 FANYTRVELPPLEELAPVPVRGGVAPQVGVLSETPGYVIVRTADKDAVKQDVTLLPDVQA 341
Query: 322 DFEKITLLKNKIT 334
E LL +
Sbjct: 342 PVETGQLLGRVVV 354
>gi|58583579|ref|YP_202595.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84625391|ref|YP_452763.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188575165|ref|YP_001912094.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae PXO99A]
gi|58428173|gb|AAW77210.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84369331|dbj|BAE70489.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188519617|gb|ACD57562.1| penicillin-binding protein 6 [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 401
Score = 209 bits (530), Expect = 6e-52, Method: Composition-based stats.
Identities = 84/320 (26%), Positives = 151/320 (47%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A
Sbjct: 49 SKSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAW 108
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN +
Sbjct: 109 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNTYA 168
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ ++F+NAHG+ GH+++A D+A+L + D+P Y +IK ++ K N
Sbjct: 169 AKIGMKDSYFVNAHGLSAEGHHSSAYDLAMLGRAMVRDYPDTYAYNKIKEFQVGSIKQSN 228
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA + DQ LIAV++G R S +LL+
Sbjct: 229 RNRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRDDQRLIAVVMGDSSEEQRATDSLALLNW 288
Query: 263 GFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + M+ K+
Sbjct: 289 GFRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNL 348
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ +++ +K + K
Sbjct: 349 QAPIKQGQQVGTVKVSLDGK 368
>gi|332289415|ref|YP_004420267.1| D-alanyl-D-alanine carboxypeptidase fraction A [Gallibacterium
anatis UMN179]
gi|330432311|gb|AEC17370.1| D-alanyl-D-alanine carboxypeptidase fraction A [Gallibacterium
anatis UMN179]
Length = 394
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 89/348 (25%), Positives = 149/348 (42%), Gaps = 13/348 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-----SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+++ + S F Y L+D N+G V+A PD PAS
Sbjct: 8 LKKLAFAGLLGFSSISVAFAEGLYDIAPPQINAQTYILMDYNSGAVLAALNPDQKHYPAS 67
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLI 112
LTK+MT+YV+ LKE + T +TI + + S +++ + + +I
Sbjct: 68 LTKMMTSYVIGQALKEGRIHNTDMVTIDEESWGKNFPGSSKMFLNVNQQVSVADLNRGII 127
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND VA+A+ L ++ F+ MN GL THF HG+ Y+T+RDMA+
Sbjct: 128 IASGNDACVAMAKYLAGSQANFINMMNQYVDQFGLKNTHFETVHGLDHENQYSTSRDMAL 187
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
+ RI D P+ H + K K PN N L DG+KTG T +G+N+VAS
Sbjct: 188 IGARIIRDLPEEYHIYAEKEFTFNNIKQPNRNGLLWDKNLTVDGLKTGHTDEAGYNLVAS 247
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSN 287
A+ + LI+V++G R S LL GF N + K + + Y
Sbjct: 248 AVNNNMRLISVVMGVNSFKGREIESKKLLQWGFANFENVKPLAANQVVSEQPVYYGKEGK 307
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+V + + + + +++ ++ ++ + + +
Sbjct: 308 IKLGTLSDVYLVIPKGKSQAVKARYQLNQKFLEAPLKQGQVVGSIVYQ 355
>gi|325929151|ref|ZP_08190294.1| penicillin-binding protein 6 [Xanthomonas perforans 91-118]
gi|325540470|gb|EGD12069.1| penicillin-binding protein 6 [Xanthomonas perforans 91-118]
Length = 401
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 86/320 (26%), Positives = 154/320 (48%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A
Sbjct: 49 SKSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAW 108
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 109 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 168
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N
Sbjct: 169 AKIGMKDSYFVNAHGLSAEGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGTIKQSN 228
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+
Sbjct: 229 RNRLLWRDSAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDSSEEQRATDSLALLNW 288
Query: 263 GFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + M+ K+
Sbjct: 289 GFRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNL 348
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ +++ +K + K
Sbjct: 349 QAPIKQGQQVGTVKVSLDGK 368
>gi|225374869|ref|ZP_03752090.1| hypothetical protein ROSEINA2194_00492 [Roseburia inulinivorans DSM
16841]
gi|225213252|gb|EEG95606.1| hypothetical protein ROSEINA2194_00492 [Roseburia inulinivorans DSM
16841]
Length = 421
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 87/333 (26%), Positives = 146/333 (43%), Gaps = 11/333 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
S S P L++ +TG ++ E PAS+TK+MT ++F ++ +
Sbjct: 54 STPAADSSDVLNLSAPSVLLMEASTGTILYEKNSHTVLRPASITKIMTLILIFDAIESGQ 113
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
L +T+S+ A+ S + T T+D +K + + SAND VA+AE +C +E
Sbjct: 114 ISLEDTVTVSEYAASMGGSQVFLEPNETQTVDTMIKCISIASANDACVAMAEFICGSEAA 173
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
FV+ MN +K LG++ T F+N G+ GH T+A D+A++S + T +PQ Y I
Sbjct: 174 FVEKMNERAKGLGMNDTTFVNCCGLDVDGHMTSAYDVALMSRELTTKYPQIHDYSTIWMD 233
Query: 194 EIKGKK--------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
I NTN + + A G+KTG T + + + A+A++ LIAV++
Sbjct: 234 TITHVTRRGSEEFGLTNTNKLIRQYQYATGLKTGSTSLAKYCVSATAVKDGMELIAVVMA 293
Query: 246 ALDRNTRNKVSASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
A D R +A+LL+ GF +D + +
Sbjct: 294 APDFKIRFADAATLLNYGFSKCRIYSDENTDTLAALPLKKGISDEVSLCYRSPFQYVVTD 353
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + KE + ES ++ + K
Sbjct: 354 GSDLSGITKELELPESVEAPVASGDVIGRAVYK 386
>gi|261825019|pdb|3IT9|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Apo State
gi|261825020|pdb|3IT9|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Apo State
gi|261825021|pdb|3IT9|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Apo State
gi|261825022|pdb|3IT9|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Apo State
gi|261825023|pdb|3ITA|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Acyl-Enzyme Complex With Ampicillin
gi|261825024|pdb|3ITA|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Acyl-Enzyme Complex With Ampicillin
gi|261825025|pdb|3ITA|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Acyl-Enzyme Complex With Ampicillin
gi|261825026|pdb|3ITA|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Acyl-Enzyme Complex With Ampicillin
gi|261825027|pdb|3ITB|A Chain A, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Complex With A Substrate Fragment
gi|261825028|pdb|3ITB|B Chain B, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Complex With A Substrate Fragment
gi|261825029|pdb|3ITB|C Chain C, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Complex With A Substrate Fragment
gi|261825030|pdb|3ITB|D Chain D, Crystal Structure Of Penicillin-Binding Protein 6 (Pbp6)
From E. Coli In Complex With A Substrate Fragment
Length = 352
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 96/325 (29%), Positives = 148/325 (45%), Gaps = 11/325 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + + L+D +G V+AE D +PASLTK+MT+YVV LK K LT
Sbjct: 4 QTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTD 63
Query: 79 PITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+T+ K+A K G +++ + K +I++S ND +A+A+ + +++
Sbjct: 64 MVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQE 123
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F+ MN +K LGL+ T F HG+ G ++TARDMA+L + D P+ + K
Sbjct: 124 SFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKE 183
Query: 193 LEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ PN N + L DGMKTG T +G+N+VASA QGD LI+V+LGA
Sbjct: 184 FTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRI 243
Query: 252 RNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R S LL+ GF I + + + + S E T N
Sbjct: 244 RFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKN 303
Query: 308 TQMKEAKDKESHFIDFEKITLLKNK 332
+ + +K ++
Sbjct: 304 LKASYTLTEPQLTAPLKKGQVVGTI 328
>gi|258623181|ref|ZP_05718190.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573]
gi|258625506|ref|ZP_05720398.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603]
gi|258582212|gb|EEW07069.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603]
gi|258584479|gb|EEW09219.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573]
Length = 413
Score = 209 bits (530), Expect = 7e-52, Method: Composition-based stats.
Identities = 93/346 (26%), Positives = 143/346 (41%), Gaps = 14/346 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FL ++MA + + Y L+D +TG ++ E NPAS
Sbjct: 29 KFLFRLSMACMAFVPTLGFSALTITPEPPQLAANGYVLIDYHTGKILVERNAHQKLNPAS 88
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMTAYV +K + IS NA S + GS + L + + LI
Sbjct: 89 LTKLMTAYVAGQEMKRGNIHAEDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGLI 148
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 149 VQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDDSNLYSTPYDIAL 208
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P + G N N + DGMKTG+T +G+++ +S
Sbjct: 209 LGQAIIRDLPDIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 268
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNE 288
A G+ LI+V++G+ R S LLS GF I NE
Sbjct: 269 ATSGEMRLISVVMGSKSVKIREAESKQLLSYGFRFFETVSPHQKESVIQSQRIWYGDKNE 328
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
V S + + + ++ K ++ +
Sbjct: 329 VALGSADTVYLTLPRNDVKKLNAVIQLDKTLEAPVAKGDVVGAILY 374
>gi|262164351|ref|ZP_06032089.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
gi|262026731|gb|EEY45398.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
Length = 389
Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats.
Identities = 93/346 (26%), Positives = 142/346 (41%), Gaps = 14/346 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FL +MA + + Y L+D +TG ++ E NPAS
Sbjct: 5 KFLFRFSMACMAFVPTLGFSALTITPEPPQLAANGYVLIDYHTGKILVERNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMTAYV +K + IS NA S + GS + L + + LI
Sbjct: 65 LTKLMTAYVAGQEMKRGNIHAEDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDDSNLYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGQAIIRDLPDIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNE 288
A G+ LI+V++G+ R S LLS GF I NE
Sbjct: 245 ATSGEMRLISVVMGSKSVKIREAESKQLLSYGFRFFETVSPHQKESVIQSQRIWYGDKNE 304
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
V S + + + ++ K ++ +
Sbjct: 305 VALGSADTVYLTLPRNDVKKLNAVIQLDKTLEAPVAKGDVVGAILY 350
>gi|121591022|ref|ZP_01678339.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80]
gi|121547132|gb|EAX57264.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80]
Length = 386
Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 157/354 (44%), Gaps = 20/354 (5%)
Query: 1 MRQFL--------VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + + +++ + S F A Y L+D ++G V+AE D
Sbjct: 1 MKKSILKSVLASSITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ +K L + ISKNA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
D+A+L + D P+ + + G N N + DG+KTG T +G
Sbjct: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA +G+ L+AV++G + N R S LLS GF + +
Sbjct: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T + +K+ +K ++ +
Sbjct: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQ-LKAPLKKGDVVGTLYYQ 353
>gi|146310988|ref|YP_001176062.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter sp.
638]
gi|145317864|gb|ABP60011.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Enterobacter sp. 638]
Length = 400
Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats.
Identities = 96/339 (28%), Positives = 147/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L+ + L A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 17 LLFLFSPTLYAAEQAAPEAPPVDARAWILMDYASGKVLAEGNADEQLDPASLTKIMTSYV 76
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K L +TI K+A K G +++ + K +I++S ND
Sbjct: 77 VGQALKAGKIKLDDMVTIGKDAWATGNPALRGSSVMFLKPGDQVSVSDLNKGVIIQSGND 136
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + ++ F+ MN ++ LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 ACIALADYVAGSQDSFIGLMNGYAQRLGLTKTTFKTVHGLDAPGQFSTARDMALLGKALI 196
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P+ + K + PN N + + DGMKTG T +G+N+VASA QGD
Sbjct: 197 HDVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNVNVDGMKTGTTAGAGYNLVASATQGDM 256
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LG R S LL+ GF I I + + + S
Sbjct: 257 RLISVVLGTKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFISQRVWFGDKSEVNLGAG 316
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
E T N + +K ++
Sbjct: 317 EAGSVTIPRGQLKNLKASYTLTDPQLTAPLKKGQVVGTI 355
>gi|114046558|ref|YP_737108.1| penicillin-binding protein 6 [Shewanella sp. MR-7]
gi|113888000|gb|ABI42051.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Shewanella sp. MR-7]
Length = 391
Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats.
Identities = 95/348 (27%), Positives = 156/348 (44%), Gaps = 12/348 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L+I ++++ + A T Y L+D +G +IAE NPASLTK
Sbjct: 9 IKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAEENAYESLNPASLTK 68
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K +TISKNA S + G T+ + + + +I++S
Sbjct: 69 MMTSYVIGQEIKAGNVSPDDDVTISKNAWSKNFSDSSKMFIEVGKTVKVSDLNRGIIIQS 128
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H +TA DMA+L
Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENSHGLDAENHKSTAYDMALLGA 188
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQ 234
+ D P+ + K G K N N + + DG+KTG T +G+N+VASA +
Sbjct: 189 ALIRDVPEEYRVYSEKYYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 248
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
LI+V++G R S LL+ GF QQ + +
Sbjct: 249 DGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETVTPYKAGDSFVTQQIWYGDKSTVDL 308
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ + + K ++ E + L ++ K
Sbjct: 309 GVATDTPITISRGRAKDLKANFELTKPLDAPLKKGETVGRLYFQLDGK 356
>gi|291613195|ref|YP_003523352.1| beta-lactamase [Sideroxydans lithotrophicus ES-1]
gi|291583307|gb|ADE10965.1| Beta-lactamase [Sideroxydans lithotrophicus ES-1]
Length = 419
Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats.
Identities = 90/342 (26%), Positives = 149/342 (43%), Gaps = 11/342 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPF----LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ L+ + + + F S Y L D +G + E + PA L
Sbjct: 41 MKRALIFLFALLPTLAFSQEQEQSSSPPILAANSYALYDYTSGQFLVEQNANAHIPPAQL 100
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVK 114
TKLMTAYVVFS +K+ K LT + S A+ G ++++ L+ LIV+
Sbjct: 101 TKLMTAYVVFSAIKQGKLSLTRKLLPSAYATRMQNDEPRMYLTAGKEVSVEELLRGLIVQ 160
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND A +AE+L E MNN ++ LGL THF+NA G HY++A D+A+++
Sbjct: 161 SANDAARVLAETLANHEMALADAMNNEAQQLGLKDTHFVNATGTPDAQHYSSAHDLALIA 220
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ DFP+Y H + + + G N N + DG+ TG + F +VASA +
Sbjct: 221 AALVRDFPEYYHIYSQREYQYNGINQFNRNRLLWMDPFVDGLATGNNESEEFYMVASAKR 280
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVP 290
++ LI+V++G R+ S LL+ GF + + K ++
Sbjct: 281 DERRLISVVIGTATEKLRSSESQRLLNYGFQDFEAIRLYAKDQLVSSKYVWKGTAKEVEI 340
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T + + + K+ ++ +
Sbjct: 341 GFRADRYITIPKGRR-DALKATLETKQPILAPIDRGQQIGTL 381
>gi|258621965|ref|ZP_05716994.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573]
gi|258585718|gb|EEW10438.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM573]
Length = 391
Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats.
Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 20/354 (5%)
Query: 1 MRQFLV--------IIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ ++ +++ + S F + A Y L+D ++G V+AE +
Sbjct: 1 MKKSILKSVLASSVTLSITLSSTAFASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ +K L + ISKNA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VA+AE + +E FV MN + +LG+ +HF N+HG+ Y+T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
D+A+L + D P+ + + G N N + DG+KTG T +G
Sbjct: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA +G+ L+AV++G + N R S LLS GF + +
Sbjct: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T + +KE +K ++ +
Sbjct: 301 MGDKDTVALGVDKDTYVTLPRGQAKDLTASFVLEKE-LKAPLKKGDVVGTLYYQ 353
>gi|332982023|ref|YP_004463464.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
50-1 BON]
gi|332699701|gb|AEE96642.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
50-1 BON]
Length = 394
Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats.
Identities = 94/354 (26%), Positives = 158/354 (44%), Gaps = 21/354 (5%)
Query: 3 QFLVIIAMAMLSNIF----------------PFLSIAETNKLPYYTLLDTNTGHVIAENY 46
F+V + +A+L+ F P + L+D TG ++ E
Sbjct: 9 IFIVSLCLALLNGAFIGNIAAAHEPNEQDEQPASEDPLKLQSKSAVLMDAATGQLLYEKN 68
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
AS+TK+MT ++ L + T + +SK+A+ S ++G MT+D
Sbjct: 69 AHEKLPIASITKIMTMDLIMEALDSGRIKPTDVVRVSKDAASLGGSQIWLEEGEEMTVDE 128
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+K + V SAND A A+AE + T++ FV+ MN +K+LG++ T+F N HG+ HY++
Sbjct: 129 MMKAIAVNSANDAAAAMAEYIAGTQENFVKMMNEKAKSLGMNDTNFANVHGLDDDNHYSS 188
Query: 167 ARDMAILSWRIK-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
A D+A++S + D + L NTN + T+ GADG+KTG T +
Sbjct: 189 AYDVALMSRELAKHDGIFKYTSIWMDTLRDGETNLANTNKLIRTY-GADGLKTGSTDKAK 247
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQ 282
+ I A+A + D LIAVILG R +A LL GF T + +
Sbjct: 248 YCISATAKKDDMRLIAVILGGPTSQVRFDEAAKLLDYGFNTFTINRIVKKGEIIRNIRVT 307
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ S++V I+ + + + + + K + E+ + + K
Sbjct: 308 RGKSDQVNGIAADDLSVLTKKTDTASIEKRIELPETIEAPVVESQKIGKLTALK 361
>gi|291484778|dbj|BAI85853.1| penicillin-binding protein [Bacillus subtilis subsp. natto BEST195]
Length = 389
Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 158/353 (44%), Gaps = 17/353 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L + + ++ F + A+ ++ L++ +TG V+ +
Sbjct: 1 MKRLLSTLLIGIMLLTFAPSAFAKQDGKRTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+MT ++ L + K ++ + S++A+ S + G MT+ LK +
Sbjct: 61 APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+ S ND +VA+AE + +E++FV+ MN +K LGL T F N G+ + GHY++A DMA
Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLKNTSFKNPTGLTEEGHYSSAYDMA 180
Query: 172 ILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
I++ + + ++ K NTN + + G DG+KTG+T + +
Sbjct: 181 IMAKELLKYESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYC 240
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ ASA +G+ IAV+ GA RN +L F +
Sbjct: 241 LTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPLYKRNQTVAKVKVKKG 300
Query: 288 EVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ I SE + K+ + N KE K K++ +K L + KK
Sbjct: 301 KQKLIELTTSEPISILTKKGEDMNDVKKEIKMKDNISAPIQKGQELGTLVLKK 353
>gi|288934486|ref|YP_003438545.1| beta-lactamase [Klebsiella variicola At-22]
gi|290508688|ref|ZP_06548059.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
gi|288889195|gb|ADC57513.1| Beta-lactamase [Klebsiella variicola At-22]
gi|289778082|gb|EFD86079.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
Length = 387
Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats.
Identities = 90/350 (25%), Positives = 144/350 (41%), Gaps = 18/350 (5%)
Query: 1 MR-QFLVIIAMAMLSNI------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+ + + +++ S FP + + L+D TG V+ NP
Sbjct: 1 MKGRLFIAVSLLASSVSCAFAVDFPATVAPPAIQAGSWVLMDYTTGQVLTAGNEHQQRNP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNA 107
ASLTKLMT YVV + + +T+ K+A K G +++ +
Sbjct: 61 ASLTKLMTGYVVDRAIDSHRITFDDIVTVGKDAWAKGNPVFDGSSLMFLKPGDRVSVRDL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+ LIV S ND VA+A+ + + +FV MN + L L THF HG+ G +++A
Sbjct: 121 SRGLIVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLQDTHFETVHGLDAPGQHSSA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGF 226
D+A+LS I P H + K L G N N + DG+KTG T +GF
Sbjct: 181 YDLAVLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGF 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQ 282
N++ASA+ G + LIAV++GA R + +A LL G N + + K +
Sbjct: 241 NLIASAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGQKVGTERIWY 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++ + + K DK+ +
Sbjct: 301 GDKEQIKLGTDQDFWLALPKAEVSRIKAKYVLDKKDLEAPIAANQRVGEI 350
>gi|325915034|ref|ZP_08177363.1| penicillin-binding protein 6 [Xanthomonas vesicatoria ATCC 35937]
gi|325538732|gb|EGD10399.1| penicillin-binding protein 6 [Xanthomonas vesicatoria ATCC 35937]
Length = 401
Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 155/320 (48%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A
Sbjct: 49 SKSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAW 108
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 109 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 168
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N
Sbjct: 169 AKIGMKNSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGSIKQSN 228
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+
Sbjct: 229 RNRLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDTSEEQRATDSLALLNW 288
Query: 263 GFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + M+ AK+
Sbjct: 289 GFRFFETHGLYAPGKVVTKQKVWKGAQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVAKNL 348
Query: 317 ESHFIDFEKITLLKNKITKK 336
E+ +++ +K + K
Sbjct: 349 EAPIKKGQQVGTVKVSLDGK 368
>gi|261212803|ref|ZP_05927087.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
gi|260837868|gb|EEX64545.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
Length = 378
Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats.
Identities = 91/337 (27%), Positives = 139/337 (41%), Gaps = 9/337 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ + + + Y L+D +TG V+ E+ NPASLTKLMT+YV
Sbjct: 4 MAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASLTKLMTSYVA 63
Query: 66 FSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+K + IS NA S + G+ + L + + LIV+S ND +VA
Sbjct: 64 GQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIVQSGNDASVA 123
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
IAE + +E FV MN+ + LG++ + F N HG+ Y+T D+A+L I D P
Sbjct: 124 IAEHVAGSEGAFVSLMNSWALQLGMNNSSFANPHGLDNPNLYSTPYDIALLGQAIIRDLP 183
Query: 183 QYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + G N N + DGMKTG+T +G+++ +SA G+ LI+
Sbjct: 184 EIYTLYSEPSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMRLIS 243
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVC 297
V++GA R S LLS GF + N + E V
Sbjct: 244 VVMGAKSVKIREAESKQLLSYGFRFFETVSPHQKDSVVQSQRIWYGNKNEVALGSKETVY 303
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
T DK + K L+ + +
Sbjct: 304 LTLPRNDVKKLNAVIELDK-TLEAPINKGDLVGSILY 339
>gi|119775724|ref|YP_928464.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella amazonensis
SB2B]
gi|119768224|gb|ABM00795.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Shewanella amazonensis SB2B]
Length = 392
Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats.
Identities = 98/343 (28%), Positives = 159/343 (46%), Gaps = 10/343 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L I++ + + + A + Y L+D +TG +IAE + NPASLTK+MT+Y
Sbjct: 15 LLAIMSASAFAAPPTVVPDAPSVAAKAYVLMDYHTGQIIAEEHAYEQLNPASLTKMMTSY 74
Query: 64 VVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
V+ +K +TI+KNA S + G T+ + + +I++S ND
Sbjct: 75 VIGHEMKVGNISPEDDVTITKNAWSKNFPDSSKMFIEVGKTVKAADLNRGIIIQSGNDAC 134
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + TE FV MN+ +K LG++ ++F N+HG+ H TTA DMAIL + D
Sbjct: 135 VAMAEHIAGTEDAFVDMMNSWAKQLGMTDSYFENSHGLDSDNHKTTAYDMAILGAALIRD 194
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+ + K G K N N + DG+KTG T +G+N+VASA Q D L
Sbjct: 195 VPEEYRIYSEKEFTFNGIKQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVASATQDDMRL 254
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE 295
I+V++GA +R S LLS GF + + + + ++ +
Sbjct: 255 ISVVMGASSEASRKAESKKLLSYGFRFFETVTPYKAGDSFVNQQIWYGDRESVDLGVATD 314
Query: 296 --VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + + + K E+ E + + ++ K
Sbjct: 315 TPLTIRRGKGKELQANFELTKPLEAPLAKGEVVGRVYFQLDGK 357
>gi|90415028|ref|ZP_01222988.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
profundum 3TCK]
gi|90323842|gb|EAS40448.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
profundum 3TCK]
Length = 393
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 89/335 (26%), Positives = 156/335 (46%), Gaps = 11/335 (3%)
Query: 6 VIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
V +++++ + P + A Y L+D NTG V+ E + NPASLTKLMT+YV
Sbjct: 17 VFLSLSLPALAVPTVVPDAPVLGAKGYVLMDYNTGRVLVEKNANVKLNPASLTKLMTSYV 76
Query: 65 VFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+K + IS+NA S + G+ +++ + + LI++S ND +V
Sbjct: 77 AGQEMKRGNISQDDIVVISRNAWARNFSDSSKMFIEVGTEVSMMDLYRGLIIQSGNDASV 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
AIAE + ++ FV MN+ +KNLG++ + F NAHG+ Y+T D+A+L + D
Sbjct: 137 AIAEHVAGSQDAFVGLMNSWAKNLGMNNSQFANAHGLDNPNLYSTPYDIALLGQALIKDL 196
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLI 240
P + + N N +G DGMKTG+T +G+++ +SA QG+ LI
Sbjct: 197 PDLYPLYSERSFTYNNITQRNRNGLLGDKSINVDGMKTGYTGGAGYSLASSATQGNMRLI 256
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE- 295
+V++G+ +R S LL+ GF + + + N + +
Sbjct: 257 SVVMGSSSTKSREAESKQLLNYGFRFFSTISPHKKGQEVLSERIWMGNSDTISLGVENDT 316
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V ++ + ++ KD + + + +
Sbjct: 317 YVTLSRNDAKKVTANIELTKDLMAPLAIGDNVGSI 351
>gi|119470843|ref|ZP_01613454.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Alteromonadales bacterium TW-7]
gi|119446070|gb|EAW27349.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Alteromonadales bacterium TW-7]
Length = 390
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 96/334 (28%), Positives = 149/334 (44%), Gaps = 10/334 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ + A+ S + Y L+D TG VIAE D PASLTK+MT+YV+
Sbjct: 18 LVCSAAVFSASAQIIPAPPQVNAKGYFLVDFTTGKVIAEGEADTKLAPASLTKMMTSYVI 77
Query: 66 FSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ +K T +TIS+ A S + G +++D +I++S ND VA
Sbjct: 78 GTEIKVGNIAPTDMVTISEKAWAKNFPESSKMFIEVGKQISVDELNHGIIIQSGNDACVA 137
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
++E + +E F MN + LG++ +HF+N+HG+ HYTT RDMA LS + D P
Sbjct: 138 MSEHIAGSESAFADLMNAHAAKLGMTNSHFINSHGLDTDEHYTTPRDMATLSAALIRDVP 197
Query: 183 QYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ ++ K G K N N L DG+KTG T +G+++V SA + LIA
Sbjct: 198 EEYAIYKEKSYTYNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSLVTSATKNGMRLIA 257
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE-- 295
V++G R S LL+ GF + + N N I E+
Sbjct: 258 VVMGTSSERARKVESKKLLNYGFRFFETITPYKAGDSFAEQRIWMGNKENVSLGILEDTP 317
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + N + E+ K+ L
Sbjct: 318 ITIPRGQHKNLKANFELDNTLEAPLAKGTKVGTL 351
>gi|258511715|ref|YP_003185149.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478441|gb|ACV58760.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 414
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 75/328 (22%), Positives = 141/328 (42%), Gaps = 6/328 (1%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P S+ + L+D TG V+ AS+TK+MT ++F + K
Sbjct: 47 TQSAPAASVDLAKQARSAVLMDFATGKVLYAKNAHERLPMASITKIMTLLLIFEAIDSGK 106
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T + S+ A+ S + G TMT+ + +K + + SAND VA+AE L +E+
Sbjct: 107 LKWTDRVQASERAASMGGSQIFLEPGETMTVRDLVKGIAIASANDACVAMAEHLDGSEEA 166
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----PQYMHYFQ 189
FV MN +K LG++ THF N +G+ HY++A D+A++S + ++
Sbjct: 167 FVARMNQRAKELGMTDTHFANCNGLPAPNHYSSAHDIAVMSRALLMHPEITAFTSVYSDY 226
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
++ NTN V + G DG+KTG+T + + + A+A + +IAV++G
Sbjct: 227 LRKDTDHPLWLVNTNKLVRFYDGVDGLKTGYTQEAKYCLSATAKRDGFRVIAVVMGEPKP 286
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
RN A++L+ F + + + + +++
Sbjct: 287 TVRNAEIAAMLNYAFAHYKSVQVYPRGHVVGQVAVKRGTRDRVEAVTAEPVAFVTERSSK 346
Query: 310 MKEAKDKE--SHFIDFEKITLLKNKITK 335
+ + + + ++ + + K
Sbjct: 347 TAYTTEIQWMTLKAPVSRGQVVGHVLVK 374
>gi|153873396|ref|ZP_02001993.1| D-alanyl-D-alanine carboxypeptidase [Beggiatoa sp. PS]
gi|152070138|gb|EDN68007.1| D-alanyl-D-alanine carboxypeptidase [Beggiatoa sp. PS]
Length = 393
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 100/333 (30%), Positives = 155/333 (46%), Gaps = 11/333 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L+ + Y L D +G V+ E D PASLTKLMTAY+VF LK
Sbjct: 18 LTLASLLVPSPPPIAARAYILQDFYSGKVLMEKKADERLEPASLTKLMTAYLVFQKLKIG 77
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
K LT P+ IS+ A + S G+ + +D LK +I++S ND +VA+AE + TE+
Sbjct: 78 KIKLTDPVKISQKAWKMGGSRMYLDPGTFVPVDLLLKGMIIQSGNDASVALAELIGGTEQ 137
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F MN ++ LGL TH++N+ G+ HY+TARD A ++ + DFP Y ++
Sbjct: 138 AFATLMNEQAQRLGLKNTHYVNSTGLPDEQHYSTARDSATIAQALIYDFPSYYRWYSGSE 197
Query: 193 LEIKGKKYPNTNWAVGTFL-----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
N N + DGMKTG+T A+G+ +VASAI+ + LI+V+LG
Sbjct: 198 FTYNNITQTNRNRLLRRKPPLKGMKVDGMKTGYTDAAGYCLVASAIRKNMRLISVVLGTK 257
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQK 301
+ R +VS +L GF + I+ + N + +S + +
Sbjct: 258 NEKARTEVSERMLDYGFRFFRTYPLYKALQPLDIQRVWYGNTTQLPLGLSRPLYITVPKG 317
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ N K + + + LK ++
Sbjct: 318 QYGQLNATAHIDKYIMAPVMAGKSYGSLKIRLG 350
>gi|332286510|ref|YP_004418421.1| putative penicillin-binding protein precursor [Pusillimonas sp.
T7-7]
gi|330430463|gb|AEC21797.1| putative penicillin-binding protein precursor [Pusillimonas sp.
T7-7]
Length = 418
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 96/327 (29%), Positives = 155/327 (47%), Gaps = 6/327 (1%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ A+ + A + LD N+G +IA D P PASLTKLM+AYVVF
Sbjct: 54 STAVTTVGELATVPAPALTARAWMTLDVNSGQIIAAQNLDEPVEPASLTKLMSAYVVFDA 113
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
L+ + L + +S+ A + S K S +++D+ L+ +IV+S ND VA+AE++
Sbjct: 114 LENNRLSLEQKVPVSEKAWKTEGSRMFIKVNSQVSVDDLLQGVIVQSGNDATVALAEAVA 173
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+E FV MN + GL THF N+ G+ H TTARD+ L+ + TDFPQY+HY+
Sbjct: 174 GSEDAFVTIMNEEAARQGLRDTHFENSTGLPGPTHLTTARDLGTLAKNLVTDFPQYLHYY 233
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
K K N N + + DG+KTG T ++G+ +V +A++ + +++VI+GA
Sbjct: 234 SQKEFTYNNIKQNNRNRLLWSDPTVDGLKTGHTQSAGYCLVTTALRDGRRVVSVIVGAAS 293
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE------VCTTQKE 302
R + S LL+ F N K + + EV + V + +
Sbjct: 294 DAARTENSLKLLNWSFQNFDTIKLYDNTKPAVTARVWEGEVETVGLGSTTPTWVTVPRDK 353
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + K+ +
Sbjct: 354 AEQIKPVAQYTQPLIAPLKAGVKVGKV 380
>gi|312144315|ref|YP_003995761.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium sp.
'sapolanicus']
gi|311904966|gb|ADQ15407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium sp.
'sapolanicus']
Length = 375
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 81/341 (23%), Positives = 142/341 (41%), Gaps = 6/341 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ + I+ M+ ++ A + L++ TG V+ D PAS+TK+M
Sbjct: 4 KHIVFILIFTMVFSLAGTYVSAFDVDMESAILMEAETGQVLFSKNADRKLPPASMTKIMP 63
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ L+E L +TIS+ A+ S + + L+ LK + + S ND +V
Sbjct: 64 LLIAMEKLEEGAISLDDKVTISRYAASMGGSQIFLAANTQVELEKLLKAVTIASGNDASV 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
AI E + T F+ MN ++ LG+ T+F N+ G+ +Y+TARD+AI+S +
Sbjct: 124 AIGEYIAGTYSNFIAMMNRRAEELGMENTNFSNSTGLPDPDNYSTARDIAIMSRELAKYP 183
Query: 182 PQYMHYFQIKGL---EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ NTN + + DG+KTG T +GF + A+A +GD
Sbjct: 184 LVLQWGSIWTENIQLPGREAMLVNTNRLINVYPSMDGLKTGHTREAGFCLSATAQKGDTR 243
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEE 295
LI+V++ R + LL GF + R+ + Q+ + EE
Sbjct: 244 LISVVMQGDTLEQREDTTIRLLDYGFNAFSKREVATEGDQIQNIPVSQSANQVAAGEIEE 303
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + +E + +E+ K + I +
Sbjct: 304 SFYVMVQKGSERDITQEIEIEENLEAPLLKGDRIGRLIIYR 344
>gi|157370876|ref|YP_001478865.1| D-alanyl-D-alanine carboxypeptidase [Serratia proteamaculans 568]
gi|157322640|gb|ABV41737.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans
568]
Length = 389
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 90/352 (25%), Positives = 149/352 (42%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS---------IAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ ++ + +L + + Y L+D TG V+A+ D
Sbjct: 1 MKRSVLAVITGILLPLAVQAADAPLNFPLNTPPAIDAASYVLMDYTTGQVLAQENADQRR 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
NPASLTKLMT V+ L + K L +T+ K+A K G +T+
Sbjct: 61 NPASLTKLMTGLVIDHALDQHKIGLDDVVTVGKDAWAQGNPVFKGSSLMFLKPGDRVTVR 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ + +I+ S ND VA+A+ + ++ FV+ MN S LGL THF HG+ G +T
Sbjct: 121 DLSRGIIIDSGNDACVAMADYVAGSQAAFVKLMNEKSAQLGLQNTHFETVHGLDAPGQFT 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
TA D+A++S I P H + K L G N N L DG+KTG T ++
Sbjct: 181 TAGDLAVISRAIIMSEPAEYHMYSEKSLTWNGITQQNRNGLLWDKNLRVDGLKTGHTESA 240
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDF 280
GFNI+ASA +GD+ LIAV++G R + + LL+ G + + +
Sbjct: 241 GFNIIASATEGDRRLIAVVMGGKSPKGREEQARKLLTWGLRDFVTLHLFSAGQSLGQEKV 300
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++ + + + + + + +
Sbjct: 301 WYGDRHEVAVGSQQDQYLSLPKSEADKLKAQYVINTPRLDAPLTQGQSVGEI 352
>gi|119384875|ref|YP_915931.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans
PD1222]
gi|119374642|gb|ABL70235.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans
PD1222]
Length = 385
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 87/343 (25%), Positives = 148/343 (43%), Gaps = 11/343 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR I ++ P + A + D TG V+ E D P PAS++KLM
Sbjct: 1 MRALTFRIFALLMVLALP--ARAFDTNARAAWVYDVATGTVLMEKNADEPLPPASMSKLM 58
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T ++F L + + + T +S A + S + T+++ + +I+ S ND
Sbjct: 59 TLNMLFEALHDGRVAMDTTFPVSTKAWQMGGSKMFVEPADRPTVEDLIHGIIINSGNDAC 118
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
V +AE L TE+ F + MN ++ LG++ +HF+N+ G H + D+ +L+ R+ T+
Sbjct: 119 VVVAEGLAGTEEAFARLMNERARQLGMANSHFVNSSGWPDPQHRMSMHDLGLLATRLITE 178
Query: 181 FPQYMHYFQIKGLEIKGKKYP---NTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQ 234
FP+ F + KG+ N N + G ADG+KTG T +G+ +V SA+Q
Sbjct: 179 FPELYKNFALTEYNYKGRVPSNAGNRNPLLRLGTGDWKADGLKTGHTQEAGYGLVGSAVQ 238
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPN 291
GD+ ++ VI G R + + +++ + T R I +I+ V
Sbjct: 239 GDRRIVFVITGLSSEKARAEEAEQIVNWAYRQFTMRTIIPKDEIVIQAPVWLGDKGRVGL 298
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + + + EA K K L I
Sbjct: 299 TTRDGVRVLIPAGSQSGVKAEAVFKGPIEAPITKGDQLGELIV 341
>gi|52786237|ref|YP_092066.1| DacF [Bacillus licheniformis ATCC 14580]
gi|163119526|ref|YP_079656.2| penicilin binding protein [Bacillus licheniformis ATCC 14580]
gi|52348739|gb|AAU41373.1| DacF [Bacillus licheniformis ATCC 14580]
gi|145903033|gb|AAU24018.2| penicilin binding protein (putative D-alanyl-D-alanine
carboxypeptidase) [Bacillus licheniformis ATCC 14580]
Length = 390
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 161/353 (45%), Gaps = 17/353 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK---------LPYYTLLDTNTGHVIAENYPDHPW 51
M++ L + + + + ++A+ + L++ +TG V+ +
Sbjct: 1 MKRHLSKLLIFTIILMTAPSALAKESAKKPSELADDAKSAVLIERDTGKVMYDKNSREKL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+MT ++ L E K + + S+ A+ S + G MT+++ LK +
Sbjct: 61 PPASMTKVMTMLLIMEALDEGKIKMKDKVRTSEYAASMGGSQIFLEPGEEMTVEDMLKGI 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+ S ND +VA+AE + +E++FV+ MN + LGL T F N G+ + GHY+TA DMA
Sbjct: 121 AIGSGNDASVAMAEHIAGSEEEFVKRMNEKAAELGLKDTSFQNTTGLPEEGHYSTAYDMA 180
Query: 172 ILSWRIKTDFPQY----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+++ + + ++ K NTN + + G DG+KTGFT + +
Sbjct: 181 LMAKELLKYENITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTNEAKYC 240
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNL 285
+ ASA +G+ +IAV+ GA RN +L F N II D
Sbjct: 241 LTASAKKGNMRVIAVVFGASTPKERNAQITKMLDFAFSQYETHPMYKRNEIISDLKVNKG 300
Query: 286 SNEVPNI--SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ N+ SE + K+ N + KE K KE +K T L + KK
Sbjct: 301 REQKINLVTSEPISLLTKKGENIESVKKEIKQKEDIQAPVKKGTELGTLVLKK 353
>gi|295695956|ref|YP_003589194.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
2912]
gi|295411558|gb|ADG06050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
2912]
Length = 425
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 85/327 (25%), Positives = 142/327 (43%), Gaps = 9/327 (2%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
S L+D TG V+ E PAS+TK+MT + L+ + L+
Sbjct: 62 AETSPKLAEHAVSAVLMDAATGTVLMEKNSHEKLPPASITKIMTMLLTVEALERGQVQLS 121
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ S+ A+ S + G MTLD+ +K + V SAND +VA+AE L +E +FV
Sbjct: 122 DRVRTSERAASMGGSQIFLEPGEEMTLDDMMKGIAVASANDASVAVAEYLAGSEAEFVSL 181
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----PQYMHYFQIKGL 193
MN ++ LG+ THF+N +G+ GHYT+A D+AI+S + ++ ++
Sbjct: 182 MNRRAEELGMRDTHFVNCNGLPAEGHYTSAYDIAIMSRELLKHPQVLRWTSLYEDYLRKN 241
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ NTN V + G DG+KTGFT ++ + + A+A +GD +IAV++G RN
Sbjct: 242 TDRPFWLVNTNKLVRFYPGVDGLKTGFTESARYCLSATAKKGDFRVIAVVMGEPTSKQRN 301
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
+L F K + + + + V + +
Sbjct: 302 AEVTQMLDWAFGQYQFVKLYGPGDPVGQVRLDKGDPEKAPVTVRQSVGVLLRRGESKEGI 361
Query: 310 MKEAKDKESHFIDFEKITLLKNKITKK 336
A+ +K L+ + +
Sbjct: 362 RARAEVSPG-TAPKKKGALVGKVVVYR 387
>gi|229525558|ref|ZP_04414963.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
VL426]
gi|229339139|gb|EEO04156.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
VL426]
Length = 391
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 157/354 (44%), Gaps = 20/354 (5%)
Query: 1 MRQFL--------VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + + +++ + S F A Y L+D ++G V+AE D
Sbjct: 1 MKKSILKSVLASSITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ +K L + ISKNA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
D+A+L + D P+ + + G N N + DG+KTG T +G
Sbjct: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA +G+ L+AV++G + N R S LLS GF + +
Sbjct: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T + +K+ +K ++ +
Sbjct: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQ-LKAPLKKGDVVGTLYYQ 353
>gi|325844944|ref|ZP_08168309.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
gi|325488994|gb|EGC91383.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
Length = 389
Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats.
Identities = 79/349 (22%), Positives = 142/349 (40%), Gaps = 15/349 (4%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M+ L + + L + + L++ TG ++ E P PA
Sbjct: 1 MKIRKVLISLLTCFSFSCLVHSKIVSADELVTDGKAAILIEAETGEILYEKNPHEQLAPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK+M+ Y++ + I +S+NA+ Y S K G M + + K + +
Sbjct: 61 SMTKMMSMYLILESIHNGALQWDEVIRVSENAASYGGSQIYLKPGEKMIVRDLFKSIAIA 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND A+AE + +E+ FV+ MN +K LG++ T F N G+ GH TT DM+I++
Sbjct: 121 SANDSVTALAERVAGSEEAFVELMNQKAKELGMNNTVFKNPTGLTAAGHVTTPYDMSIIA 180
Query: 175 WRIKTDFPQYMHY-----FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ D+P+ + I+ NTN + G DG+KTGFT +G+ +
Sbjct: 181 RHLLQDYPEITEFSGLYEDYIRQDTESPFWLVNTNRLIKYVDGVDGLKTGFTQEAGYCLT 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNL 285
A+A + +IAV++GA RN+ L+ + K+ +
Sbjct: 241 ATAQRNGMRVIAVVMGASKSEIRNQEVTRLIEYAYEQYELVPKLESGLVVSSGHHLLAKT 300
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ +++ +K+ E + + +
Sbjct: 301 RDFDIVTGDQITILKKKTDGEGETNYTVTLNEEIILPIQPGDEVGTLTY 349
>gi|121728034|ref|ZP_01681072.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52]
gi|147675663|ref|YP_001216421.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
gi|229512959|ref|ZP_04402425.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
gi|229523260|ref|ZP_04412667.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80]
gi|229529956|ref|ZP_04419346.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)]
gi|254225715|ref|ZP_04919321.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51]
gi|254285618|ref|ZP_04960582.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226]
gi|121629663|gb|EAX62083.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52]
gi|125621723|gb|EAZ50051.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51]
gi|146317546|gb|ABQ22085.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
gi|150424480|gb|EDN16417.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226]
gi|227012764|gb|ACP08974.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
gi|229333730|gb|EEN99216.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)]
gi|229339623|gb|EEO04638.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80]
gi|229349852|gb|EEO14806.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
gi|327483673|gb|AEA78080.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae LMA3894-4]
Length = 391
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 157/354 (44%), Gaps = 20/354 (5%)
Query: 1 MRQFL--------VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + + +++ + S F A Y L+D ++G V+AE D
Sbjct: 1 MKKSILKSVLASSITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ +K L + ISKNA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
D+A+L + D P+ + + G N N + DG+KTG T +G
Sbjct: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA +G+ L+AV++G + N R S LLS GF + +
Sbjct: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T + +K+ +K ++ +
Sbjct: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQ-LKAPLKKGDVVGTLYYQ 353
>gi|28901151|ref|NP_800806.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
2210633]
gi|260362712|ref|ZP_05775581.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus K5030]
gi|260879998|ref|ZP_05892353.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus AN-5034]
gi|260894673|ref|ZP_05903169.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus Peru-466]
gi|28809664|dbj|BAC62639.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
2210633]
gi|308086579|gb|EFO36274.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus Peru-466]
gi|308091747|gb|EFO41442.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus AN-5034]
gi|308112412|gb|EFO49952.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus K5030]
Length = 389
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 96/355 (27%), Positives = 147/355 (41%), Gaps = 19/355 (5%)
Query: 1 MRQFLVIIAMAM---------LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
MR+ + + + A Y L+D +TG V+ E D
Sbjct: 1 MRKITLFNTTFLTGLVTFSHFAFAAPTVVPNAPELSSRGYVLMDYHTGKVLVERDADKRL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNAL 108
NPASLTKLMTAYV + L + IS+NA S + +++ L +
Sbjct: 61 NPASLTKLMTAYVAGQEVNAGNISLDDQVVISRNAWAKNFPDSSKMFIEVNTSVPLSDLY 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ L+V+S ND +VAIAE + +E FV MN+ + LGL+ + F N HG+ G Y+T
Sbjct: 121 RGLVVQSGNDASVAIAEHVAGSEAGFVSLMNSWASQLGLTNSSFTNPHGLDSDGLYSTPH 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A L I D P + G N N + DGMKTG+T +G++
Sbjct: 181 DIAKLGQAIIRDLPDIYPMYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYS 240
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
+ SA GD LIAV++GA ++ R S LLS GF +
Sbjct: 241 LATSATNGDMRLIAVVMGAKSQSVRESESKQLLSYGFRFYDTLMPTAAGTDIANARVWMG 300
Query: 284 NLSNEVPNISEEVCTTQKEII--NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ +V T + +++ D + + + L K+ K
Sbjct: 301 QKDELKVGVNRDVYLTLPKGDVNKLKAEVEYNGDLLAPIAQDQVVGTLLYKVDGK 355
>gi|227112044|ref|ZP_03825700.1| penicillin-binding protein 6 [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 401
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 91/338 (26%), Positives = 151/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
V++ + L Y L+D ++G V+AE+ D +PASLTK+M +YV+
Sbjct: 18 VLLVGLVPFTYAEQLPAVPQIDAKAYILIDHHSGKVLAESNADERLDPASLTKIMASYVI 77
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDI 119
+K K T +T+ K+A K G + + K ++++S ND
Sbjct: 78 GQAIKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSGNDA 137
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
++A+A+ + ++ FV MNN +K L L+ T+F HG+ G Y+TARDMA+L +
Sbjct: 138 SIALADYVAGSQDAFVSLMNNYAKALNLTNTNFRTVHGLDAPGQYSTARDMALLGQALIR 197
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N T L DG+KTG T +G N+VASA +G+
Sbjct: 198 DVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTSGAGHNLVASATEGNMR 257
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R + S LL+ GF I + + +++
Sbjct: 258 LISVVLGAQTDAIRFRESEKLLTWGFRFFETVTPIKTDAPFTTQRVWFGTEKEARLGVAQ 317
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T + N + ++ K ++
Sbjct: 318 DAALTIPKGQMKNLKASFTLNQPQLSAPLTKNQVVGTI 355
>gi|93005488|ref|YP_579925.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter
cryohalolentis K5]
gi|92393166|gb|ABE74441.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Psychrobacter cryohalolentis K5]
Length = 388
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 156/343 (45%), Gaps = 9/343 (2%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
Q +V ++++M + + Y L+D NTG ++A+ + PASLTK+MT+
Sbjct: 12 QLVVGVSISMGAVMASAAIQPPEMANTAYVLMDYNTGEILAQKNANQALPPASLTKMMTS 71
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDI 119
Y++ L T + +S +A S + ++ + L+ +I++S ND
Sbjct: 72 YIIEQRLASGDLKETDQVLMSPSAWCRGSSSQSCMYVPVNKSASVIDMLRGIIIQSGNDA 131
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+ A+AE + +E F MN ++ +G+ THF+N+ G+ GH +A D+A LS I
Sbjct: 132 SKAMAEHIAGSEASFAILMNEQAQKIGMKNTHFVNSTGMPDEGHQASALDLAKLSRAIIK 191
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ Y + K G N N + T DG+KTG T A+G+ + AS+ + L
Sbjct: 192 NSGDYYSIYSEKEFTYNGITQGNRNALLATDPTVDGLKTGHTDAAGYCLAASSNREGMRL 251
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNIS 293
I+VI+G + R S LL+ GF + T + ++ + F + +
Sbjct: 252 ISVIMGTESQQARADQSRELLNWGFGHFTTVTQAPAGQFVSKVPVWFGEAKEIEVATGDN 311
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ TT+ + T + + E+ ++I + I K
Sbjct: 312 LQILTTKTQKNKITTVVDIPESLEAPIKKGQEIGKMMAVIDGK 354
>gi|116748745|ref|YP_845432.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobacter
fumaroxidans MPOB]
gi|116697809|gb|ABK16997.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Syntrophobacter fumaroxidans MPOB]
Length = 422
Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats.
Identities = 80/314 (25%), Positives = 140/314 (44%), Gaps = 6/314 (1%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
L++ +TG ++ E D PAS TK+ + Y+VF L++ + L I
Sbjct: 31 SPGQVNAKSAILMEVSTGAILFEQNADEVIEPASFTKIASLYLVFEALRQGRIHLNDEIW 90
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
IS+ A S G+ + L+ LK + V S ND VA AE + + + FV+ MN
Sbjct: 91 ISEAAWRTGGSKMFVGVGTKVPLEELLKGIAVVSGNDACVAAAEHVSGSAETFVEAMNRK 150
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
++ LG++ + F+N HG+ G TTARDMAIL FP+ + Y ++
Sbjct: 151 TRELGMTHSRFLNPHGLPVEGQTTTARDMAILDSAYLRQFPESLQYHSMREYTYNNIVQY 210
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N N + DG+KTG+ A+G+++ A+A + L+AV++GA R + + LL+
Sbjct: 211 NRNHLLLKDPSVDGLKTGYVAAAGYHLAATAKRDGMRLLAVVMGAGTPAVREREALKLLN 270
Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNE------VPNISEEVCTTQKEIINYNTQMKEAKD 315
GF T + + + P + +Q + +++ +
Sbjct: 271 YGFRYYTLVQPFPQGQPVTTVKVWKGQRDQLGLYPQEAAGFLVSQAQKAQLRWEIQAPAE 330
Query: 316 KESHFIDFEKITLL 329
+ +K+ +
Sbjct: 331 ITAPVQAGQKVGEV 344
>gi|212712937|ref|ZP_03321065.1| hypothetical protein PROVALCAL_04035 [Providencia alcalifaciens DSM
30120]
gi|212684415|gb|EEB43943.1| hypothetical protein PROVALCAL_04035 [Providencia alcalifaciens DSM
30120]
Length = 409
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 86/330 (26%), Positives = 142/330 (43%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + Y L+D N+G V+AE+ D +PASLTK+MT+YV+ +K K
Sbjct: 38 AFPNTSIPAVPDIDAAAYILIDYNSGKVLAESNADQRRDPASLTKMMTSYVIGQAIKSGK 97
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ +A K G +++ + + ++S ND VA+A+ +
Sbjct: 98 IGANDMVTVGDDAWATGNPIFKGSSLMFLKPGDRVSVSQLTRGINLQSGNDACVAMADYV 157
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ FV MN LGL THF HG+ G Y++ARDMA++ + D P+
Sbjct: 158 AGDQANFVNLMNTYVTKLGLQNTHFQTVHGLDAAGQYSSARDMALIGQALIRDVPEEYEI 217
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N L DG+KTG T A+G+N+VASA GD LI+V++G
Sbjct: 218 YKEKEFTFNNIRQTNRNGLLWDKSLAVDGIKTGHTDAAGYNLVASAKDGDMRLISVVMGG 277
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKE 302
R+ S LL+ GF K + ++ + + S + E++ T
Sbjct: 278 KSSKGRDAESKKLLTYGFRFYETVKPLQADVEFATAPVWFGDDSEVKLGVVEDLYLTIPR 337
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + +K +
Sbjct: 338 GRLKDLKASYELTTTEIEAPLKKGQQVGTI 367
>gi|315127074|ref|YP_004069077.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Pseudoalteromonas sp. SM9913]
gi|315015588|gb|ADT68926.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Pseudoalteromonas sp. SM9913]
Length = 386
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 95/334 (28%), Positives = 149/334 (44%), Gaps = 10/334 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ + A+ S + Y L+D TG VIAE D PASLTK+MT+YV+
Sbjct: 15 LVCSAAVFSATAQIIPAPPQVNAKGYFLVDFTTGKVIAEGEADTKLAPASLTKMMTSYVI 74
Query: 66 FSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ + T +T+S+ A S + G +++D+ +I++S ND VA
Sbjct: 75 GTEINAGNIAPTDMVTVSEKAWAKNFPESSKMFIEVGKQVSVDDLNHGIIIQSGNDACVA 134
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +E F MN ++ +G++ THF+N+HG+ HYTT RDMA L + D P
Sbjct: 135 MAEHIAGSESAFADLMNAHAEKIGMTNTHFVNSHGLDTDAHYTTPRDMATLGAALIRDVP 194
Query: 183 QYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
++ K G K N N L DG+KTG T +G+++V SA + D LIA
Sbjct: 195 DEYALYKQKSFTFNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSLVTSATKNDMRLIA 254
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE-- 295
V++G R S LL+ GF + + N N I E+
Sbjct: 255 VVMGTSSERARKVESKKLLNYGFRFFETITPYKAGDSFAEQRVWMGNKENVSLGILEDTP 314
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + N + E+ K+ L
Sbjct: 315 ITIPRGQHKNLKANFELDDTLEAPLAKGTKVGTL 348
>gi|332654526|ref|ZP_08420269.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
D16]
gi|332516490|gb|EGJ46096.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
D16]
Length = 383
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 87/348 (25%), Positives = 152/348 (43%), Gaps = 12/348 (3%)
Query: 1 MRQFLVIIAMAMLSN-----IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ ++ +L P L++ TG ++ E PAS
Sbjct: 1 MKRIGSLVLAVLLLTGTASAQEAAAQSPLELSAPSAVLVEKETGTILYEKEAKRQMEPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MT ++ L + +T+S A+ S K+G MT+ +K + V S
Sbjct: 61 VTKVMTLLLIMEALDSGRISREDVVTVSARAAGMGGSQVYLKEGEQMTVGELIKCITVVS 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE L +E FVQ MN ++ LG+ T+F+N G+ GH TTA D+A++S
Sbjct: 121 GNDATVAMAEYLAGSESAFVQQMNQRAQKLGMEDTNFVNCTGLPASGHVTTAYDIALMSR 180
Query: 176 RIKTDFP--QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + P + + + NTN V + GA G+KTG T ++ + + A+A
Sbjct: 181 ELILNHPGIREYTTIWMDSIRDGAFGLTNTNRLVRFYEGATGLKTGSTDSALYCMSATAE 240
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVP 290
+ LIAV++ A R + + ++L GF T + + P
Sbjct: 241 RDGMELIAVVMAAPTAADRFEDAKAMLDYGFGAYTLMQVYPESPLAPIPVLLGTVGQIQP 300
Query: 291 NISEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ E V + E + T++ A+D E+ +K+ L+ + +
Sbjct: 301 ELERECRVLVRKGEEGSVTTKLTLAQDLEAPVEAGQKVGELEILVNGE 348
>gi|288962599|ref|YP_003452893.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
gi|288914865|dbj|BAI76349.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
Length = 451
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 90/338 (26%), Positives = 153/338 (45%), Gaps = 7/338 (2%)
Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+R+ ++ + A+LS L+D ++G V+ + P+S+TK
Sbjct: 77 IRRLAGILSLVAAVLSATPAMALSQPDTAARQAYLVDLSSGAVLLDKNGAERMAPSSMTK 136
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MTAY+ + L + L T IS+ A + S K GST+ +++ L+ L++ S ND
Sbjct: 137 MMTAYLTYDALVHGRTTLDTSFPISQTAWKMGGSRMFLKLGSTVRVEDLLRGLLIDSGND 196
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
AVA+AE L +E F MN ++ LG++ +HFMNA G GHYTTARD+AIL+ R+
Sbjct: 197 AAVALAEGLAGSESAFAGLMNAKARELGMADSHFMNASGWPDPGHYTTARDLAILATRLI 256
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
DFPQ+ HY + G + N N + + DG+KTG T G+ + AS + +
Sbjct: 257 RDFPQFYHYESERNFTWNGIRQGNRNPLLYHPVSVDGIKTGHTEVGGYGLTASGERNGRR 316
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISE 294
L+ V+ G +RN LL + + + + + +++
Sbjct: 317 LVLVVNGLPSPQSRNDEPTRLLDWAWNSFKLYPLLRKGELVEQAPVWMGAEDSVPVTVAD 376
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+V T + + E + ++
Sbjct: 377 DVTVTMAPADRNSLHVVAT-LAEPLPSPVRRGDVVGRL 413
>gi|143439|gb|AAA22704.1| DD-carboxypeptidase [Bacillus subtilis]
Length = 389
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 157/353 (44%), Gaps = 17/353 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L + + ++ F + A+ ++ L++ +TG V+ +
Sbjct: 1 MKRLLSTLLIGIMLLTFAPSAFAKQDGKRTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+MT ++ L + K ++ + S++A+ S + G MT+ LK +
Sbjct: 61 APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+ S ND +VA+AE + +E++FV+ MN +K LGL T F N G+ + GHY++A DMA
Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLKNTSFKNPTGLTEEGHYSSAYDMA 180
Query: 172 ILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
I++ + + ++ K NTN + + G DG+KTG+T + +
Sbjct: 181 IMAKELLKYESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYC 240
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ ASA +G+ IAV+ GA RN +L F +
Sbjct: 241 LTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPLYKRNQTVAKVKVKKG 300
Query: 288 EVP----NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ SE + K+ + N KE K K++ +K L + KK
Sbjct: 301 KQKFIELTTSEPISILTKKGEDMNDVKKEIKMKDNISAPIQKGQELGTLVLKK 353
>gi|296103221|ref|YP_003613367.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295057680|gb|ADF62418.1| D-alanyl-D-alanine carboxypeptidase fraction C [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 404
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 96/339 (28%), Positives = 149/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L+ + + L A + L+D ++G V+AE D +PASLTK+MT+YV
Sbjct: 20 LLFLFVPTLYAAEQAAPEAPPVDARAWILMDYSSGKVLAEGNADEKLDPASLTKIMTSYV 79
Query: 65 VFSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K L +TI K+A S K G +++ + K +I++S ND
Sbjct: 80 VGQALKAGKIKLDDMVTIGKDAWATGNPALRGSSVMFLKPGDQVSVSDLNKGVIIQSGND 139
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + ++ F+ MN ++ LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 140 ACIALADYVAGSQDSFIGLMNGYAQKLGLTNTTFKTVHGLDAPGQFSTARDMALLGKALI 199
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P + K + PN N + + DGMKTG T +G+N+VASA QGD
Sbjct: 200 HDVPDEYAIHKEKEFTFNKIRQPNRNRLLWSSNVNVDGMKTGTTAGAGYNLVASATQGDM 259
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI+V+LG R S LL+ GF I + + + + S
Sbjct: 260 RLISVVLGTKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVSQRVWFGDKSEVNLGAG 319
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
E T N + +K ++
Sbjct: 320 EAGSVTIPRGQLKNLKASYTLTDPQLTAPLKKGQVVGTI 358
>gi|45644640|gb|AAS73028.1| D-alanyl-D-alanine carboxypeptidase [uncultured marine gamma
proteobacterium EBAC20E09]
Length = 382
Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats.
Identities = 93/339 (27%), Positives = 155/339 (45%), Gaps = 8/339 (2%)
Query: 1 MRQFLVI-IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M+ L+ + ++ + F+ A L Y L+D T VIA++ D PAS+TK+
Sbjct: 1 MKNLLLFTLLVSNIILGQSFVPNAPELNLKGYILIDPTTNTVIAQSNSDGLIEPASMTKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTAYVV ++ + + IS+ A + S + G +++ + LK +I++S ND
Sbjct: 61 MTAYVVADQIQNDLISIDDEVLISEKAWKMGGSKMFIEVGKRVSILDLLKGIIIQSGNDA 120
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
AVAIAE + TE FV MN + +LG++ T F+N+ G+ H TTA D+AIL+ T
Sbjct: 121 AVAIAEYVGGTEDGFVDLMNAYAASLGMNNTSFINSTGLPDVNHLTTAEDLAILTSNFIT 180
Query: 180 DFPQYMHYFQIKGLEIKGK--KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
FP+ F+ K E G N N + +DG+KTG T ++G+ ++ SA +G+
Sbjct: 181 KFPEIYALFKEKEFEYGGISGNKYNRNKLLWRDETSDGVKTGHTSSAGYCLIGSAKRGNM 240
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNIS 293
LI V+ G+ N + LL GF K + + + +
Sbjct: 241 RLITVVAGSDSANNSFSDTQRLLEYGFRFYATEKYFDVGTEYASAKVWGGKNDTISLGVK 300
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ T + ++ K + K +
Sbjct: 301 NDISITLPRTKFKDVKVNYV-VKNNVQAPINKGDKIGTL 338
>gi|258625415|ref|ZP_05720309.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603]
gi|258582326|gb|EEW07181.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM603]
Length = 391
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 20/354 (5%)
Query: 1 MRQFLV--------IIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ ++ +++ + S F + A Y L+D ++G V+AE +
Sbjct: 1 MKKSILKSVLASSVTLSITLSSTTFASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ +K L + ISKNA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VA+AE + +E FV MN + +LG+ +HF N+HG+ Y+T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
D+A+L + D P+ + + G N N + DG+KTG T +G
Sbjct: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA +G+ L+AV++G + N R S LLS GF + +
Sbjct: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T + +KE +K ++ +
Sbjct: 301 MGDKDTVALGVDKDTYVTLPRGQAKDLTASFVLEKE-LKAPLKKGDVVGTLYYQ 353
>gi|206579571|ref|YP_002237570.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
342]
gi|206568629|gb|ACI10405.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
342]
Length = 389
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 91/346 (26%), Positives = 145/346 (41%), Gaps = 19/346 (5%)
Query: 6 VIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+ IA+++L++ FP + + L+D TG V+ NPASLT
Sbjct: 7 LFIAVSLLASSVSCAFAVDFPATVAPPAIQAGSWVLMDYTTGQVLTAGNEHQQRNPASLT 66
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
KLMT YVV + + +T+ K+A K G +++ + + L
Sbjct: 67 KLMTGYVVDRAIDSHRITFDDIVTVGKDAWAKGNPVFDGSSLMFLKPGDRVSVRDLSRGL 126
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
IV S ND VA+A+ + + +FV MN + L L THF HG+ G +++A D+A
Sbjct: 127 IVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLRDTHFETVHGLDAPGQHSSAYDLA 186
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVA 230
+LS I P H + K L G N N + DG+KTG T +GFN++A
Sbjct: 187 VLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIA 246
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLS 286
SA+ G + LIAV++GA R + +A LL G N + + K + +
Sbjct: 247 SAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGQKVGTERIWYGDKE 306
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + + K DK+ +
Sbjct: 307 QIKLGTDQDFWLALPKAEVSRIKAKYVLDKKDLEAPIAANQRVGEI 352
>gi|167625150|ref|YP_001675444.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella halifaxensis
HAW-EB4]
gi|167355172|gb|ABZ77785.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella halifaxensis
HAW-EB4]
Length = 390
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 102/348 (29%), Positives = 155/348 (44%), Gaps = 12/348 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPF--LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L ++A LS A T Y L+D NTG +IAE NPASLTK
Sbjct: 8 LKTLLFATSVAALSVQAAPVVTPNAPTVAAKAYVLMDYNTGQIIAEENAYESLNPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K T +TISK A S + G +T++ K +I++S
Sbjct: 68 MMTSYVIGHEIKVGNVSPTDEVTISKKAWSKNFPDSSKMFIEVGKKVTVEELNKGIIIQS 127
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H +TA DMAIL
Sbjct: 128 GNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSDNHKSTAYDMAILGA 187
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
I D P ++ K G K N N L DG+KTG T +G+N+V SA +
Sbjct: 188 AIIRDVPDEYAVYKEKSFTYNGIKQYNRNGLLWDKSLSVDGIKTGHTSGAGYNLVTSATK 247
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
LI+V++G R S LL+ GF Q+ + I
Sbjct: 248 DGMRLISVVMGTKSEAARKAESKKLLNYGFRFFETVTPYKAGDTFVTQKIWYGDRETIDL 307
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ + N + K+ ++ E + + ++ K
Sbjct: 308 GVVTDTPITISRGQAKNLQANFELTKELKAPIAKGETVGRVYFQLNGK 355
>gi|300722312|ref|YP_003711597.1| D-alanyl-D-alanine carboxypeptidase [Xenorhabdus nematophila ATCC
19061]
gi|297628814|emb|CBJ89392.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Xenorhabdus nematophila ATCC 19061]
Length = 402
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 85/351 (24%), Positives = 151/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPF--------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
++ + IA+A + F + Y L+D N+G ++AE D +
Sbjct: 10 IKSVTLGIALAASVSAFANTDDNFKTMIPGVPELDSEAYILIDYNSGKILAEKNADVRRD 69
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTK+MT+YV+ +K K +T+ K+A K G +++
Sbjct: 70 PASLTKMMTSYVIGQAIKSGKIGPNDIVTVGKDAWATGNPIFKGSSLMFLKPGDQVSVAM 129
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ + ++S ND VA+A+ + ++ FV MN ++LGL THF HG+ +G Y++
Sbjct: 130 LSRGINLQSGNDACVAMADYVAGSQDAFVSLMNKYVQSLGLQNTHFQTVHGLDANGQYSS 189
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
ARDMA++ + D P ++ K + PN N L DG+KTG T +G
Sbjct: 190 ARDMALIGQALIRDVPDEYAIYKEKEFTYNNIRQPNRNGLLWDKSLNVDGIKTGHTSGAG 249
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA +G+ LI+ ++G+ R S LL+ GF + + +
Sbjct: 250 YNLVSSATEGNMRLISAVMGSPTFKGREGDSKKLLTWGFRFFETVSPLQVGKEFASEPIW 309
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++V T + + + K ++
Sbjct: 310 FGDTDKVQLGVDKDVYLTIPRGRLKDLKASYVLNNTELHAPLVKNQVVGTI 360
>gi|262173532|ref|ZP_06041209.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451]
gi|261890890|gb|EEY36877.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451]
Length = 378
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 89/336 (26%), Positives = 138/336 (41%), Gaps = 7/336 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ + + Y L+D +TG ++ E NPASLTKLMTAYV
Sbjct: 4 MAFVPTLGFSALTITPEPPQLAANGYVLIDYHTGKILVERNAHQKLNPASLTKLMTAYVA 63
Query: 66 FSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+K + IS NA S + GS + L + + LIV+S ND +VA
Sbjct: 64 GQEMKRGNIHAEDQVRISNNAWAKKFPDSSKMFIEVGSYVNLMDLYRGLIVQSGNDASVA 123
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
IAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+L I D P
Sbjct: 124 IAEHVAGSESAFVSLMNSWAQQLGMNNSSFANPHGLDNSNLYSTPYDIALLGQAIIRDLP 183
Query: 183 QYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + G N N + DGMKTG+T +G+++ +SA G+ LI+
Sbjct: 184 EIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMRLIS 243
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCT 298
V++G+ R S LLS GF I NEV S +
Sbjct: 244 VVMGSKSVKIREAESKQLLSYGFRFFETVSPHQKETVIQSQRIWYGDKNEVALGSADTVY 303
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + ++ K ++ +
Sbjct: 304 LTLPRNDVKKLNAVIQLDKTLEAPVAKGDVVGAILY 339
>gi|321311824|ref|YP_004204111.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
gi|320018098|gb|ADV93084.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
Length = 389
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 90/353 (25%), Positives = 157/353 (44%), Gaps = 17/353 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L + + ++ F + A+ ++ L++ +TG V+ +
Sbjct: 1 MKRLLSTLLIGIMLLTFAPSAFAKQDGKRTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+MT ++ L + K ++ + S++A+ S + G MT+ LK +
Sbjct: 61 APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+ S ND +VA+AE + +E++FVQ MN +K LGL T F N G+ + GHY++A DMA
Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVQKMNKKAKELGLKNTSFKNPTGLTEEGHYSSAYDMA 180
Query: 172 ILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
I++ + + ++ K NTN + + G DG+KTG+T + +
Sbjct: 181 IMAKELLKYESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYC 240
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ ASA +G+ IAV+ GA RN +L F +
Sbjct: 241 LTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPLYKRNQTVAKVKVKKG 300
Query: 288 EVP----NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ SE + K+ + N KE K K++ +K L + KK
Sbjct: 301 KQKFIELTTSEPISILTKKGEDMNDVKKEIKMKDNISAPIQKGQELGTLVLKK 353
>gi|16079405|ref|NP_390229.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
subtilis str. 168]
gi|221310266|ref|ZP_03592113.1| penicilin binding protein (putative D-alanyl-D-alanine
carboxypeptidase) [Bacillus subtilis subsp. subtilis
str. 168]
gi|221314589|ref|ZP_03596394.1| penicilin binding protein (putative D-alanyl-D-alanine
carboxypeptidase) [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221319512|ref|ZP_03600806.1| penicilin binding protein (putative D-alanyl-D-alanine
carboxypeptidase) [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221323788|ref|ZP_03605082.1| penicilin binding protein (putative D-alanyl-D-alanine
carboxypeptidase) [Bacillus subtilis subsp. subtilis
str. SMY]
gi|34395963|sp|P38422|DACF_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacF;
Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
Full=Penicillin-binding protein dacF; Short=PBP; Flags:
Precursor
gi|1303997|dbj|BAA12652.1| DacF [Bacillus subtilis]
gi|2634783|emb|CAB14280.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Bacillus subtilis subsp. subtilis str. 168]
Length = 389
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 89/353 (25%), Positives = 157/353 (44%), Gaps = 17/353 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L + + ++ F + A+ ++ L++ +TG V+ +
Sbjct: 1 MKRLLSTLLIGIMLLTFAPSAFAKQDGKRTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+MT ++ L + K ++ + S++A+ S + G MT+ LK +
Sbjct: 61 APASMTKIMTMLLIMEALDKGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+ S ND +VA+AE + +E++FV+ MN +K LGL T F N G+ + GHY++A DMA
Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVKKMNKKAKELGLKNTSFKNPTGLTEEGHYSSAYDMA 180
Query: 172 ILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
I++ + + ++ K NTN + + G DG+KTG+T + +
Sbjct: 181 IMAKELLKYESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYC 240
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ ASA +G+ IAV+ GA RN +L F +
Sbjct: 241 LTASAKKGNMRAIAVVFGASTPKERNAQVTKMLDFAFSQYETHPLYKRNQTVAKVKVKKG 300
Query: 288 EVP----NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ SE + K+ + N KE K K++ +K L + KK
Sbjct: 301 KQKFIELTTSEPISILTKKGEDMNDVKKEIKMKDNISAPIQKGQELGTLVLKK 353
>gi|315646365|ref|ZP_07899483.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex
V453]
gi|315278008|gb|EFU41328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex
V453]
Length = 396
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 86/358 (24%), Positives = 149/358 (41%), Gaps = 24/358 (6%)
Query: 1 MRQFLV----IIAMAMLSNIFPFLSIAE------------TNKLPYYTLLDTNTGHVIAE 44
M++ L+ ++ + + S P + LLD +TG +I E
Sbjct: 1 MKKALIAGFLVLFVGLSSTAVPSYAEENSKTGEGSSQEELAPSARSAILLDADTGTIIYE 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
PAS+TK+MT + + + T + S+ A+ S + G MT+
Sbjct: 61 KNSHDKLPPASITKIMTMLLTMEAIDAGRLQWTDKVRTSEYAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
D LK + + S ND +VA+AE L +E+ FV+ MN+ + LG+ THF+N +G+ HY
Sbjct: 121 DEMLKGIAMASGNDASVAMAEKLAGSEQGFVKMMNDKAAELGMKDTHFVNCNGLPAENHY 180
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGL----EIKGKKYPNTNWAVGTFLGADGMKTGF 220
T+A D+A++S + + + K NTN V + GADG+KTG+
Sbjct: 181 TSAHDIAVMSRELLKYEQITKYTGSYQDYLRKDSQKPFWLVNTNKLVRFYTGADGLKTGY 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + F + A+A + +AV++GA D TRN + + F T
Sbjct: 241 TSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNEVSRMFDYAFAQYTMHSIYKPGEVLG 300
Query: 281 YQQNLSNEVPNIS----EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ VP +S + K+ + E + ++ ++ +
Sbjct: 301 IVKVQKGNVPELSIQADRDYSVLVKKGVKDPDIRHEIQMDQNVKAPVSAGQVIGKLLV 358
>gi|227329429|ref|ZP_03833453.1| penicillin-binding protein 6 [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 401
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 91/338 (26%), Positives = 152/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
V++ + L Y L+D ++G V+AE+ D +PASLTK+M +YV+
Sbjct: 18 VLLVGLVPFTYAEQLPAVPQIDAKAYILIDHHSGKVLAESNADERLDPASLTKIMASYVI 77
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDI 119
+K K T +T+ K+A K G + + K ++++S ND
Sbjct: 78 GQAIKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSGNDA 137
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
++A+A+ + ++ FV MNN +K L L+ T+F+ HG+ G Y+TARDMA+L +
Sbjct: 138 SIALADYVAGSQDAFVSLMNNYAKALNLTNTNFLTVHGLDAPGQYSTARDMALLGQALIR 197
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N T L DG+KTG T +G N+VASA +G+
Sbjct: 198 DVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEGNMR 257
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA R + S LL+ GF I + + +++
Sbjct: 258 LISVVLGAQTDAIRFRESEKLLTWGFRFFETVTPIKTDAPFTTQRVWFGTEKEARLGVAQ 317
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T + N + ++ K ++
Sbjct: 318 DAALTIPKGQMKNLKASFTLNQPQLSAPLTKNQVVGTI 355
>gi|153213833|ref|ZP_01949039.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587]
gi|229510878|ref|ZP_04400357.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
gi|229517999|ref|ZP_04407443.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9]
gi|229608471|ref|YP_002879119.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236]
gi|254848079|ref|ZP_05237429.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10]
gi|124115667|gb|EAY34487.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587]
gi|229344714|gb|EEO09688.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9]
gi|229350843|gb|EEO15784.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
gi|229371126|gb|ACQ61549.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236]
gi|254843784|gb|EET22198.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10]
Length = 391
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 157/354 (44%), Gaps = 20/354 (5%)
Query: 1 MRQFL--------VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + + +++ + S F A Y L+D ++G V+AE D
Sbjct: 1 MKKSILKSVLASSITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ +K L + ISKNA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
D+A+L + D P+ + + G N N + DG+KTG T +G
Sbjct: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA +G+ L+AV++G + N R S LLS GF + +
Sbjct: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T + +K+ +K ++ +
Sbjct: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQ-LKAPLKKGDIVGTLYYQ 353
>gi|296133162|ref|YP_003640409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR]
gi|296031740|gb|ADG82508.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR]
Length = 389
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 85/351 (24%), Positives = 148/351 (42%), Gaps = 18/351 (5%)
Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPWN 52
+++ + + + M++ +FP A L+D TG V+ E D
Sbjct: 5 LKKLIGLFLLTTMITILFPTQGFAAPEQQPLLETTAESAILIDAVTGKVLFEKAADVERP 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS+TK+MT V L + K L+ + S+NAS S + +++ L +
Sbjct: 65 PASVTKVMTLLVALEQLAKGKISLSDKVVTSENASGMGGSQVYLEPNEELSMREMLISIA 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V SAND VA+AE + + + +V+ MN+ +K LGL THF NA+G+ GHYT+ARD+A+
Sbjct: 125 VGSANDACVAVAEHIAGSHEAYVKMMNDKAKELGLKHTHFANAYGLPAEGHYTSARDLAV 184
Query: 173 LSWRIKTDF-PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
+ + + L NTN + + G DG KTG+T + + + ++
Sbjct: 185 MMREALKYPLFSKLTSIKRYDLRGGEFVLWNTNKLLWWYDGCDGGKTGWTSEAKYCLAST 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK------TDRKKINYIIKDFYQQNL 285
+ LIAV++ + + + S L + GF KK+ I Q +
Sbjct: 245 CKRNGLRLIAVVMATPEPRSHFRESMRLYNYGFARYEAANIAEQGKKLGKIRVSKGQWDW 304
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ V + + E + ++ +K + K
Sbjct: 305 VDAVTASDVAIVVPKGEKKSVTYKL---DLLPYVKAPVKKGQKVGQVTVMK 352
>gi|329929847|ref|ZP_08283523.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
gi|328935825|gb|EGG32286.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
Length = 396
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 91/356 (25%), Positives = 151/356 (42%), Gaps = 24/356 (6%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNK--------------LPYYTLLDTNTGHVIAE 44
M++ L+ + +A+ + S AE N LLD +TG +I E
Sbjct: 1 MKKALIAGFLVLAVGLSSAAVPSYAEENSKPGGGSSQEELAPSARSAILLDADTGTIIYE 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
PAS+TK+MT + + E + LT + S+ A+ S + G MT+
Sbjct: 61 KNSHDKLPPASITKVMTMLLTMEAIDEGQLKLTDKVRTSEYAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
D LK + + S ND +VA+AE + +E+ FV+ MN + LG+ THF+N +G+ HY
Sbjct: 121 DEMLKGIAMASGNDASVAMAEKIAGSEEGFVKMMNEKAAELGMKDTHFVNCNGLPAENHY 180
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGL----EIKGKKYPNTNWAVGTFLGADGMKTGF 220
T+A D+A++S + + + K NTN V + GADG+KTG+
Sbjct: 181 TSAHDIAVMSRELLKYDQITKYTGAYQDYLRKDSEKPFWLVNTNKLVRFYTGADGLKTGY 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + F + A+A + +AV++GA D TRN + + F T
Sbjct: 241 TSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNEVSRMFDYAFSQYTMHSIYKPGEVLG 300
Query: 281 YQQNLSNEVPNIS----EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ VP IS ++ K+ + E + + ++
Sbjct: 301 IVKVQKGNVPEISIQAEKDYSVLVKKGVKNPDIRHEIQLDPNVKAPVAAGQVIGKL 356
>gi|153838852|ref|ZP_01991519.1| penicillin-binding protein 5 [Vibrio parahaemolyticus AQ3810]
gi|260900530|ref|ZP_05908925.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus AQ4037]
gi|149747680|gb|EDM58590.1| penicillin-binding protein 5 [Vibrio parahaemolyticus AQ3810]
gi|308107023|gb|EFO44563.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus AQ4037]
Length = 389
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 96/355 (27%), Positives = 148/355 (41%), Gaps = 19/355 (5%)
Query: 1 MRQFLVIIAMAM---------LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
MR+ + + + A Y L+D +TG V+ E D
Sbjct: 1 MRKITLFNTTFLTGLATFSHFAFAAPTVVPNAPELSSRGYVLMDYHTGKVLVERDADKRL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNAL 108
NPASLTKLMTAYV + L + IS+NA S + ++++L +
Sbjct: 61 NPASLTKLMTAYVAGQEVNAGNISLDDQVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLY 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ L+V+S ND +VAIAE + +E FV MN+ + LGL+ + F N HG+ G Y+T
Sbjct: 121 RGLVVQSGNDASVAIAEHVAGSEAGFVSLMNSWASQLGLTNSSFTNPHGLDSDGLYSTPH 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A L I D P + G N N + DGMKTG+T +G++
Sbjct: 181 DIAKLGQAIIRDLPDIYPMYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYS 240
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
+ SA GD LIAV++GA ++ R S LLS GF +
Sbjct: 241 LATSATNGDMRLIAVVMGAKSQSVRESESKQLLSYGFRFYDTLMPTAAGTDIANARVWMG 300
Query: 284 NLSNEVPNISEEVCTTQKEII--NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ +V T + +++ D + + + L K+ K
Sbjct: 301 QKDELKVGVNRDVYLTLPKGDVNKLKAEVEYNGDLLAPIAQDQVVGTLLYKVDGK 355
>gi|212636662|ref|YP_002313187.1| D-alanyl-D-alanine carboxypeptidase [Shewanella piezotolerans WP3]
gi|212558146|gb|ACJ30600.1| D-alanyl-D-alanine carboxypeptidase [Shewanella piezotolerans WP3]
Length = 421
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 102/348 (29%), Positives = 161/348 (46%), Gaps = 12/348 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPF--LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L+ ++A S A T Y LLD NTG +IAEN NPASLTK
Sbjct: 39 IKTLLLATSVAAFSAQAAPVVTPNAPTVAAKAYVLLDYNTGQIIAENNAYESLNPASLTK 98
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K + +TISKNA S + G T++++ K +I++S
Sbjct: 99 MMTSYVIGHEIKVGNVSPSDEVTISKNAWSKNFPDSSKMFIEVGKTVSVEELNKGIIIQS 158
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H TTA DMAIL
Sbjct: 159 GNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSDNHKTTAYDMAILGA 218
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
I D P+ ++ K G K N N L DG+KTG T +G+N+V SA +
Sbjct: 219 AIIRDVPEEYAVYKEKSFTYNGIKQYNRNGLLWDKSLNVDGIKTGHTSGAGYNLVTSATK 278
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVP 290
LI+V++G R S LL+ GF + + +
Sbjct: 279 DGMRLISVVMGTKSETARKAESKKLLNYGFRFFETVTPYQAGDSFVTQKIWYGDRETIDL 338
Query: 291 NISEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ + + ++ + N + K+ ++ E + + ++ K
Sbjct: 339 GVTTDTPITISRGQAKNLQANFELTKELKAPIAKGETVGRIYFQLNGK 386
>gi|271500864|ref|YP_003333889.1| beta-lactamase [Dickeya dadantii Ech586]
gi|270344419|gb|ACZ77184.1| Beta-lactamase [Dickeya dadantii Ech586]
Length = 402
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 87/337 (25%), Positives = 150/337 (44%), Gaps = 11/337 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
I+ + + L+D +G V+AE+ D +PASLTK+M++YV+
Sbjct: 20 ILMAVSPVLQAEQMPPPPQIDAKAFILIDYGSGRVLAESNADTRLDPASLTKIMSSYVIG 79
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIA 120
+K K +T+ K+A K G +++ + K ++++S ND +
Sbjct: 80 QAIKVGKITPEDKVTVGKDAWAGGNPTLRGSSLMFLKPGDQISVSDLNKGIVIQSGNDAS 139
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+A+ + ++ FV MN + LGL+ THF+ HG+ G Y+TARDMA L+ + D
Sbjct: 140 IALADYVAGSQNAFVSLMNQYAATLGLTNTHFLTVHGLDTPGQYSTARDMARLTQALIRD 199
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P K + PN N + L DG+KTG+T +G ++VASA+ GD L
Sbjct: 200 VPSEYALHSEKEFTFNNIRQPNRNRLLWSSNLRVDGVKTGYTDGAGHSLVASAVDGDMRL 259
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEE 295
I+V+LGA R + S LL+ GF I + + + ++++
Sbjct: 260 ISVVLGAPSDTIRFRESEKLLTWGFRFFETATLIRSDTPFTTQRVWLGSEKQVRLGVAQD 319
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + + +K ++
Sbjct: 320 AAMTVLKGQAKNLKASFTLAQRQLQAPLKKGQVVGTI 356
>gi|319645178|ref|ZP_07999411.1| DacF protein [Bacillus sp. BT1B_CT2]
gi|317392987|gb|EFV73781.1| DacF protein [Bacillus sp. BT1B_CT2]
Length = 395
Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats.
Identities = 96/353 (27%), Positives = 161/353 (45%), Gaps = 17/353 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK---------LPYYTLLDTNTGHVIAENYPDHPW 51
M++ L + + + + ++A+ + L++ +TG V+ +
Sbjct: 6 MKRHLSKLLIFTIILMTAPSALAKESAKKPSELADDAKSAVLIERDTGKVMYDKNSREKL 65
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+MT ++ L E K + + S+ A+ S + G MT+++ LK +
Sbjct: 66 PPASMTKVMTMLLIMEALDEGKIKMKDKVRTSEYAASMGGSQIFLEPGEEMTVEDMLKGI 125
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+ S ND +VA+AE + +E++FV+ MN + LGL T F N G+ + GHY+TA DMA
Sbjct: 126 AIGSGNDASVAMAEHIAGSEEEFVKRMNEKAAELGLKDTSFQNTTGLPEEGHYSTAYDMA 185
Query: 172 ILSWRIKTDFPQY----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+++ + + ++ K NTN + + G DG+KTGFT + +
Sbjct: 186 LMAKELLKYENITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGFTNEAKYC 245
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNL 285
+ ASA +G+ +IAV+ GA RN +L F N II D
Sbjct: 246 LTASAKKGNMRVIAVVFGASTPKERNAQITKMLDFAFSQYETHPMYKRNEIISDLKVNKG 305
Query: 286 SNEVPNI--SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ N+ SE + K+ N + KE K KE +K T L + KK
Sbjct: 306 REQKINLVTSEPISLLTKKGENIESVKKEIKQKEDIQAPVKKGTELGTLVLKK 358
>gi|294666894|ref|ZP_06732125.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603342|gb|EFF46762.1| penicillin-binding protein 6 [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 401
Score = 207 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 86/320 (26%), Positives = 154/320 (48%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A
Sbjct: 49 SKSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAW 108
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 109 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 168
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N
Sbjct: 169 AKIGMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGNIKQSN 228
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ LIAV++G R S +LL+
Sbjct: 229 RNRLLWRAPAVDGIKTGHTSEAGYCLLSSAKRGDQRLIAVVMGDNSEEQRATDSLALLNW 288
Query: 263 GFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + M+ K+
Sbjct: 289 GFRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVPKNL 348
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ +++ +K + K
Sbjct: 349 QAPIKQGQQVGTVKVSLDGK 368
>gi|293375491|ref|ZP_06621770.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter
sanguinis PC909]
gi|292645891|gb|EFF63922.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter
sanguinis PC909]
Length = 389
Score = 207 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 78/340 (22%), Positives = 140/340 (41%), Gaps = 9/340 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + + L + + L++ TG ++ E P PAS+TK+M+ Y
Sbjct: 10 LLTCFSFSCLVHSKIVSADELVTDGKAAILIEAETGEILYEKNPHEQLAPASMTKMMSMY 69
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++ + I +S+NA+ Y S K G M + + K + + SAND A+
Sbjct: 70 LILESIHNGALQWDEVIRVSENAASYGGSQIYLKPGEKMIVRDLFKSIAIASANDSVTAL 129
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E+ FV+ MN +K LG++ T F N G+ GH TT DM+I++ + D+P+
Sbjct: 130 AERVAGSEEAFVELMNQKAKELGMNNTVFKNPTGLTAAGHVTTPYDMSIIARHLLQDYPE 189
Query: 184 YMHY-----FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ I+ NTN + G DG+KTGFT +G+ + A+A +
Sbjct: 190 ITEFSGLYEDYIRQDTESPFWLVNTNKLIKYVDGVDGLKTGFTQEAGYCLTATAQRNGMR 249
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
+IAV++GA RN+ L+ + K+ + + +
Sbjct: 250 VIAVVMGASKSEIRNQEVTRLIEYAYEQYELVPKLESGLVVSSGHHLLAKTRDFDIVTGD 309
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
++ +K+ E + + +
Sbjct: 310 QITILKKKTDGEGETNYTVTLNEEIILPIQPGDEVGTLTY 349
>gi|157962970|ref|YP_001503004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella pealeana ATCC
700345]
gi|157847970|gb|ABV88469.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella pealeana ATCC
700345]
Length = 390
Score = 207 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 102/348 (29%), Positives = 156/348 (44%), Gaps = 12/348 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPF--LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L ++A LS A T Y L+D NTG +IAE NPASLTK
Sbjct: 8 LKTLLFATSVAALSAHAAPVVTPNAPTVAAKAYVLMDYNTGQIIAEENAYESLNPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K + +TISK A S + G +T+++ K +I++S
Sbjct: 68 MMTSYVIGHEIKVGNVSPSDEVTISKKAWSKNFPDSSKMFIEVGKKVTVEDLNKGIIIQS 127
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H +TA DMAIL
Sbjct: 128 GNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSDNHKSTAYDMAILGA 187
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
I D P+ ++ K G K N N L DG+KTG T +GFN+V SA +
Sbjct: 188 AIIRDVPEEYAVYKEKSFTYNGIKQYNRNGLLWDKSLSVDGIKTGHTSGAGFNLVTSATK 247
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
LI+V++G R S LL+ GF Q+ + I
Sbjct: 248 DGMRLISVVMGTKSEAARKAESKKLLNYGFRFFETVTPYKAGDTFVTQKIWYGDRETIDL 307
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ + N + K+ + E + + ++ K
Sbjct: 308 GVVTDTPITISRGQAKNLQANFELTKELNAPIAKGETVGRVYFQLNGK 355
>gi|163737219|ref|ZP_02144637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis
BS107]
gi|161389823|gb|EDQ14174.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis
BS107]
Length = 529
Score = 207 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 107/316 (33%), Positives = 157/316 (49%), Gaps = 5/316 (1%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++I ++M++ P A ++D TG V+ D +PASLTK+MT Y+
Sbjct: 29 LVIFLSMVATAPPGAMAAP----YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIA 84
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F ++ + L T + IS+NA+ PS K G + ++ VKSAND A AI E
Sbjct: 85 FEAVRNGEISLDTKVKISRNAASEQPSKLGLKTGQRIAFRYLIRAAAVKSANDAATAIGE 144
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+L +E F + M T+K LG+S T F NAHG+ Q GH +TARDM L + D+P+Y
Sbjct: 145 TLAGSEAAFARRMTRTAKALGMSRTTFKNAHGLTQKGHMSTARDMTTLGRHLLYDYPEYY 204
Query: 186 HYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ F + + +K PNTN + + GADG+KTG+T A+GFN+VASA +G++ +IA +
Sbjct: 205 NLFSRRSTDAGVRKVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGNERVIATVF 264
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
G +RN A LL +GF R K+ + YQ N S T
Sbjct: 265 GGKSSTSRNAKVAELLDLGFRRAPSRAKLRRPARPPYQGNRGLGTQLASAGDSTPNGAAG 324
Query: 305 NYNTQMKEAKDKESHF 320
K
Sbjct: 325 KTIRVSGLVKTSLRPK 340
>gi|270262090|ref|ZP_06190362.1| D-alanyl-D-alanine carboxypeptidase [Serratia odorifera 4Rx13]
gi|270043966|gb|EFA17058.1| D-alanyl-D-alanine carboxypeptidase [Serratia odorifera 4Rx13]
Length = 389
Score = 207 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 158/353 (44%), Gaps = 23/353 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS---------IAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ ++ + +L + + Y L+D TG V+AEN D
Sbjct: 1 MKRSVLSVMTGVLLPLAVQAADAPLSFPLNTPPAIDAASYVLMDYTTGQVLAENNADERR 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
NPASLTKLMT V+ L + K L +T+ K+A K G +T+
Sbjct: 61 NPASLTKLMTGLVIDHALDQHKIGLDDVVTVGKDAWAQGNPVFKGSSLMFLKPGDRVTVR 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ + +I+ S ND VA+A+ + ++ FV+ MN S LGL THF HG+ G +T
Sbjct: 121 DLSRGIIIDSGNDACVAMADYVAGSQAAFVKLMNEKSTQLGLQNTHFETVHGLDAPGQFT 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
TA D+A++S I P H + K L G N N L DG+KTG T ++
Sbjct: 181 TAGDLAVISRAIIMSEPAEYHMYSEKSLSWNGITQQNRNGLLWDKNLRVDGLKTGHTASA 240
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFY 281
GFNI+ASA +GD+ LIAV++G R + LL+ G + + ++
Sbjct: 241 GFNIIASATEGDRRLIAVVMGGKSAKGREDQARKLLTWGLRDFATVHLFSAGQTLGQEKV 300
Query: 282 QQNLSNEVPNISEE---VCTTQKEIINYNTQ-MKEAKDKESHFIDFEKITLLK 330
+ VP SE+ + ++E Q + + E+ + I ++
Sbjct: 301 WYGDRHLVPVGSEQDQYLSLPKREADKLKAQYVIKPSRLEAPLAQGQPIGEIR 353
>gi|148244582|ref|YP_001219276.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Vesicomyosocius
okutanii HA]
gi|146326409|dbj|BAF61552.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Vesicomyosocius
okutanii HA]
Length = 375
Score = 207 bits (525), Expect = 2e-51, Method: Composition-based stats.
Identities = 101/336 (30%), Positives = 163/336 (48%), Gaps = 3/336 (0%)
Query: 3 QFLVIIAMAMLSNIFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+FL I+ + NI + A Y+++D N+G VIA N + PASLTKL
Sbjct: 8 KFLTILICSFTLNIQAAIFITPKAPEISAVAYSIVDYNSGKVIASNKQHYKRAPASLTKL 67
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTAYV+F + + L + ISK A + S S + G TM L+ LK +I++S ND
Sbjct: 68 MTAYVIFQLISNDRIKLEDEVRISKKAWKTGGSKSFVEVGKTMKLETLLKGMIIQSGNDS 127
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
AVA+AE + E F +MN ++ LG++ + F NA G+ + YTTA D+ +L+ I
Sbjct: 128 AVALAEHIAGDESTFTTYMNKYARKLGMNNSQFRNASGLPDNNQYTTAADIVLLATAIIK 187
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
DFPQ+ ++ K G K N N + DG+KTGFT +G+N+VASA + L
Sbjct: 188 DFPQFYLWYSEKEFTYHGIKQYNRNKLLWNDHTVDGLKTGFTKKAGYNLVASAKRLGMRL 247
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
I+V+LG+ N R + +L GF + N + + N + + ++ +
Sbjct: 248 ISVVLGSSSVNDRTSQTQKILDYGFRFFETKTIRNIKKELPIANSTKNMLKVGTSKIISF 307
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + + K ++ + +
Sbjct: 308 TLARGQFKFSDQVIQLDTALSAPINKGDVVGKLLIQ 343
>gi|117924769|ref|YP_865386.1| penicillin-binding protein 6 [Magnetococcus sp. MC-1]
gi|117608525|gb|ABK43980.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Magnetococcus sp. MC-1]
Length = 386
Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 82/335 (24%), Positives = 148/335 (44%), Gaps = 5/335 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L ++ + + + + + D ++G ++ + D P PASLTK+MT Y+
Sbjct: 17 LALMVTILAGSQAWAEGLPFHVRAKAAIMGDIDSGAILFDQNSDMPLPPASLTKVMTLYL 76
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
++ L++ L T + +S+NA + S + K G + +++ ++ + V+S ND V +A
Sbjct: 77 LYEALQKGDITLETSMPVSRNAWQREGSKTFVKVGDKIRVEDLIRGIAVQSGNDACVVVA 136
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E L +EK F MN + LG+ A+HF NA G+ GH ++ARD IL+ + FP+Y
Sbjct: 137 EYLGGSEKGFADMMNAKAAALGMEASHFANASGLPAPGHQSSARDFFILTAALMKHFPEY 196
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
HY Q K G + N N + G+KTG T +G+ ++A + Q L +V++
Sbjct: 197 AHYVQQKEYTFNGIRQVNRNHLLWKDKYITGLKTGHTSEAGYCLIAVREKDGQRLCSVVM 256
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQ 300
G+ R + S LL G + ++ + I + T
Sbjct: 257 GSSSTEVREEESMRLLHYGNRSFETVNLFEAGATVRTLRVWKGSQKEVDGVIYNPMRITV 316
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + E + L + + K
Sbjct: 317 PKRQRGALEAGIVFN-EPLVAPVRQGQALGSLVVK 350
>gi|296332281|ref|ZP_06874743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674982|ref|YP_003866654.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150595|gb|EFG91482.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413226|gb|ADM38345.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 389
Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 155/353 (43%), Gaps = 17/353 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L + + ++ F + A+ ++ L++ +TG V+ +
Sbjct: 1 MKRLLSTLLIGIMLLTFAPSAFAKQDGKGTSELAHEAKSAVLIERDTGKVLYNKNSNERL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+MT ++ L E K ++ + S++A+ S + G MT+ LK +
Sbjct: 61 APASMTKIMTMLLIMEALDEGKIKMSDKVRTSEHAASMGGSQIFLEPGEEMTVKEMLKGI 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+ S ND +VA+AE + +E++FV+ MN ++ LGL T F N G+ + GH+++A DMA
Sbjct: 121 AIASGNDASVAMAEFISGSEEEFVKKMNKKARELGLKNTSFKNPTGLTEEGHFSSAYDMA 180
Query: 172 ILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
I++ + + ++ K NTN + + G DG+KTG+T + +
Sbjct: 181 IMAKELLKYESITKFTGTYEDYLRENTDKKFWLVNTNRLIKFYPGVDGVKTGYTGEAKYC 240
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ ASA +G+ IAV+ GA RN +L F +
Sbjct: 241 LTASAKKGNMRAIAVVFGASTPKDRNAQVTKMLDFAFSQYETHPLYKRNEIVAKVKVKKG 300
Query: 288 EVP----NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ SE + K+ + KE K ++ +K L + KK
Sbjct: 301 KQKFIELTTSEPISILTKKGEDMKNVKKEIKLNDNVSAPVQKGQELGTLVLKK 353
>gi|163740370|ref|ZP_02147764.1| D-alanyl-D-alanine carboxypeptidase family protein [Phaeobacter
gallaeciensis 2.10]
gi|161386228|gb|EDQ10603.1| D-alanyl-D-alanine carboxypeptidase family protein [Phaeobacter
gallaeciensis 2.10]
Length = 550
Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 107/316 (33%), Positives = 157/316 (49%), Gaps = 5/316 (1%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++I ++M++ P A ++D TG V+ D +PASLTK+MT Y+
Sbjct: 50 LVIFLSMVATAPPGAMAAP----YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIA 105
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F ++ + L T + IS+NA+ PS K G + ++ VKSAND A AI E
Sbjct: 106 FEAVRNGEISLDTKVKISRNAASEQPSKLGLKTGQRIAFRYLIRAAAVKSANDAATAIGE 165
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+L +E F + M T+K LG+S T F NAHG+ Q GH +TARDM L + D+P+Y
Sbjct: 166 TLAGSEAAFARRMTRTAKALGMSRTTFKNAHGLTQKGHMSTARDMTTLGRHLLYDYPEYY 225
Query: 186 HYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ F + + +K PNTN + + GADG+KTG+T A+GFN+VASA +G++ +IA +
Sbjct: 226 NLFSRRSADAGVRKVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGNERVIATVF 285
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
G +RN A LL +GF R K+ + YQ N S T
Sbjct: 286 GGKSSTSRNAKVAELLDLGFRRAPSRAKLRRPARPPYQGNRGLGTQLASAGDSTPNGAAG 345
Query: 305 NYNTQMKEAKDKESHF 320
K
Sbjct: 346 KTIRVSGLVKTSLRPK 361
>gi|153215272|ref|ZP_01949916.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587]
gi|124114811|gb|EAY33631.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 1587]
Length = 389
Score = 207 bits (525), Expect = 3e-51, Method: Composition-based stats.
Identities = 92/345 (26%), Positives = 147/345 (42%), Gaps = 16/345 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + + Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + G+ + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHTDDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P+ + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSN 287
A G+ LI+V++G+ +R S LLS GF + + +
Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDTVIQNQRLWYGDKNE 304
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ V T DK + K ++ +
Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDK-TLEAPIAKGDVVGSI 348
>gi|219871407|ref|YP_002475782.1| D-alanyl-D-alanine carboxypeptidase fraction A/penicillin-binding
protein 5 [Haemophilus parasuis SH0165]
gi|219691611|gb|ACL32834.1| D-alanyl-D-alanine carboxypeptidase fraction A/penicillin-binding
protein 5 [Haemophilus parasuis SH0165]
Length = 393
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 95/322 (29%), Positives = 145/322 (45%), Gaps = 8/322 (2%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
A Y L+D N+G V+A PD PASLTK+MT+YVV LK K + +T
Sbjct: 33 AAPQLNAQTYILMDYNSGAVLASLNPDQRQAPASLTKMMTSYVVGEALKTGKIKNSDLVT 92
Query: 82 ISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+++N+ S +++++ K +IV S ND VAIAE + +E+ F+ M
Sbjct: 93 VTENSWGQKFPGSSKMFLNVNQQVSVEDLNKGIIVVSGNDACVAIAEHISGSEQTFIDSM 152
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + GL THF HG+ Y++ARDMAI+ I D P+ + K
Sbjct: 153 NKFVQKFGLKNTHFATVHGLDHPEQYSSARDMAIIGAHIIRDLPEEYKIYSEKEFTYNKI 212
Query: 199 KYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
PN N + DGMKTG T +G+N+VASA + LI+V++G R S
Sbjct: 213 TQPNRNGLLWDKSINVDGMKTGHTDQAGYNLVASAYNSNTRLISVVMGVPTYKGREVESK 272
Query: 258 SLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
LL GF N K ++ + Y +LS ++ T + + +
Sbjct: 273 KLLQWGFANFETVKPLSAGQSVLEQAVYYGDLSKAQLGTLQDSYITVPKGKTAELKARYT 332
Query: 314 KDKESHFIDFEKITLLKNKITK 335
+K + K ++ I +
Sbjct: 333 LEKTNLEAPLVKGQVVGKVIYQ 354
>gi|325920074|ref|ZP_08182046.1| penicillin-binding protein 6 [Xanthomonas gardneri ATCC 19865]
gi|325549444|gb|EGD20326.1| penicillin-binding protein 6 [Xanthomonas gardneri ATCC 19865]
Length = 401
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 87/320 (27%), Positives = 155/320 (48%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A
Sbjct: 49 SKSWILMDYATGQVLAGENIHQQLAPASITKVMTSYVVAAEIKNGKVKRDDQVMMSERAW 108
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 109 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 168
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ ++F+NAHG+ GH++TA D+A+L + D+P+ Y +IK ++ K N
Sbjct: 169 AKIGMKDSYFVNAHGLSAEGHHSTAYDLAMLGRAMVRDYPETYAYNKIKEFQVGTIKQNN 228
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ L+AV++G R S +LL+
Sbjct: 229 RNLLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLVAVVMGDSSERQRADDSLALLNW 288
Query: 263 GFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
GF + ++ +++ V + + M+ AK+
Sbjct: 289 GFRFFETHSLYAPGKVVTKQKVWKGQQDEVQLGVAQPLLVSLQRGRYNDLKPSMEVAKNL 348
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ ++I +K + K
Sbjct: 349 QAPIKKGQQIGTVKVSLDGK 368
>gi|254251303|ref|ZP_04944621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia dolosa
AUO158]
gi|124893912|gb|EAY67792.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia dolosa
AUO158]
Length = 460
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 84/338 (24%), Positives = 150/338 (44%), Gaps = 15/338 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D + V+A D PASLTKLMTAY+VF L +KK
Sbjct: 89 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 148
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 149 ISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 208
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN+ ++ LG+ +THF + +G+ HYTTA D+A LS + DFPQY F K
Sbjct: 209 AQFVTMMNDEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 268
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244
+ + N N + DG+KTG T A+G+ +++SA + + L+AV++
Sbjct: 269 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLISSAKRAIPGTADAQRRLVAVMM 328
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCT 298
G + R + S +L+ G+ + Y+ + + + V
Sbjct: 329 GEPKESDRTQDSMKMLNYGYSAFDAVRLFKAGQAIATPRIYKGKDNTVQVGVKSDQWVTV 388
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ + +++ +K K
Sbjct: 389 PRGLGDKVKPEVDVNAPLIAPLAQGQQVGTVKVVADGK 426
>gi|21232885|ref|NP_638802.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767044|ref|YP_241806.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris
str. 8004]
gi|188990136|ref|YP_001902146.1| exported serine-type D-Ala-D-Ala carboxypeptidase [Xanthomonas
campestris pv. campestris str. B100]
gi|21114716|gb|AAM42726.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66572376|gb|AAY47786.1| penicillin-binding protein 6 [Xanthomonas campestris pv. campestris
str. 8004]
gi|167731896|emb|CAP50080.1| exported serine-type D-Ala-D-Ala carboxypeptidase [Xanthomonas
campestris pv. campestris]
Length = 403
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 87/320 (27%), Positives = 153/320 (47%), Gaps = 11/320 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ L+D TG V+A PAS+TK+MT+YVV + +K K + +S+ A
Sbjct: 51 SKSWILMDYATGQVLAGENIHQELAPASITKVMTSYVVAAEIKNGKISRDDQVMMSERAW 110
Query: 88 E-----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S S F T L++ K + ++S ND A+A+AE + +E+ F MN+ +
Sbjct: 111 REGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYA 170
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ ++F+NAHG+ GH+++A D+A+L + D+P+ Y +IK ++ K N
Sbjct: 171 AKIGMKNSYFVNAHGLSAEGHHSSAYDLAMLGRAMVRDYPETYAYNKIKEFQVGTIKQNN 230
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + DG+KTG T +G+ +++SA +GDQ L+AV++G R S +LL+
Sbjct: 231 RNLLLWRDPAVDGIKTGHTSEAGYCLLSSAKRGDQRLVAVVMGDTSERQRADDSLALLNW 290
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT------QKEIINYNTQMKEAKDK 316
GF Q+ E + V + + M+ AK+
Sbjct: 291 GFRFFETHSLYAPGKVVTKQKVWKGEQDEVQLGVAQPLLVSLQRGRYKDLKPSMEVAKNL 350
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ +++ +K + K
Sbjct: 351 QAPIKKGQQVGTVKVSLEGK 370
>gi|295675328|ref|YP_003603852.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
CCGE1002]
gi|295435171|gb|ADG14341.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
CCGE1002]
Length = 409
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 87/340 (25%), Positives = 155/340 (45%), Gaps = 15/340 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+++ ++++ + L+D + V+A D PASLTKLMTAY+V
Sbjct: 30 LVLPATLVASTAFAQVPPPGVNARSWVLVDATSNQVLASANADERVEPASLTKLMTAYLV 89
Query: 66 FSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
F L KK + I S+ S + +T+ + + +IV+S ND A+A+
Sbjct: 90 FEALDTKKITMDQSIEPSEAVRRVRNDESRMFIEALKPVTVHDLVYGMIVQSGNDAAIAL 149
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+AILS R+ D+P
Sbjct: 150 AELVGGSEAQFVDMMNKEAQKLGMKNTHFADVNGMPDPQHYTTAGDLAILSARLIRDYPD 209
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GD 236
Y + F +K K PN N + DG+KTG T A+G+ ++ASA +
Sbjct: 210 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRPLPGTTDAS 269
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ L++V++G + R + S +L+ G+ + Y+ + + +
Sbjct: 270 RRLVSVMMGETKEHDRVQDSLKMLNYGYTAYDTTRLYKANQVVATPRVYKGSQDSVQVGV 329
Query: 293 SEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + Q++ + + ++I K
Sbjct: 330 KSDQYITLPKGAGDKAKPQIELNDPLIAPIANGQQIGTAK 369
>gi|296160368|ref|ZP_06843185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. Ch1-1]
gi|295889349|gb|EFG69150.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. Ch1-1]
Length = 410
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 86/340 (25%), Positives = 155/340 (45%), Gaps = 15/340 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+++ + ++ + L+D + V+A D PASLTKLMTAY+V
Sbjct: 31 IVLPATLAASTAFAQVPPPAVNARSWVLVDATSNQVLASGNADERVEPASLTKLMTAYLV 90
Query: 66 FSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
F L+ KK + + S+ S + +T+ + + +IV+S ND A+A+
Sbjct: 91 FEALQTKKINMDQTVMPSEAVRRVRTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIAL 150
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+AILS R+ DFP
Sbjct: 151 AELVGGSESQFVNMMNTEAQRLGMKHTHFADVNGMPDPQHYTTAGDLAILSARLIRDFPD 210
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GD 236
Y + F +K K PN N + DG+KTG T A+G+ ++ASA +
Sbjct: 211 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTTDAS 270
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNI 292
+ L++V++G + R + S +L+ G+ + Y+ +
Sbjct: 271 RRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTVRLYKANQVVGTPRVYKGAQDTVQIGV 330
Query: 293 SEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + Q+++ + + +++ +K
Sbjct: 331 KSDQYITVPKGMGDKVKPQIEQIDPLIAPLANGQQVGTVK 370
>gi|152971007|ref|YP_001336116.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238895589|ref|YP_002920324.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae
NTUH-K2044]
gi|330000619|ref|ZP_08303760.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
gi|150955856|gb|ABR77886.1| DD-carboxypeptidase, penicillin-binding protein 6b [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238547906|dbj|BAH64257.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|328537943|gb|EGF64124.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
Length = 389
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 90/346 (26%), Positives = 145/346 (41%), Gaps = 19/346 (5%)
Query: 6 VIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+ IA+++L++ P + + + L+D TG V+ NPASLT
Sbjct: 7 LFIAVSLLASSVSCAFAVDLPATVAPPSIQAGSWVLMDYTTGQVLTAGNEHQQRNPASLT 66
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
KLMT YVV + + +T+ K+A K G +++ + + L
Sbjct: 67 KLMTGYVVDRAIDSHRITFDDIVTVGKDAWAKGNPVFDGSSLMFLKPGDRVSVRDLSRGL 126
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
IV S ND VA+A+ + + +FV MN + L L THF HG+ G +++A D+A
Sbjct: 127 IVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLRDTHFETVHGLDAPGQHSSAYDLA 186
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVA 230
+LS I P H + K L G N N + DG+KTG T +GFN++A
Sbjct: 187 VLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIA 246
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLS 286
SA+ G + LIAV++GA R + +A LL G N + + K + +
Sbjct: 247 SAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGQKVGTERIWYGDKE 306
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + + K DK+ +
Sbjct: 307 QIKLGTDQDFWLALPKAEVSRIKAKYVLDKKDLEAPIAANQRVGEI 352
>gi|47779364|gb|AAT38593.1| predicted penicillin-binding protein 6 precursor [uncultured gamma
proteobacterium eBACHOT4E07]
Length = 382
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 95/338 (28%), Positives = 158/338 (46%), Gaps = 6/338 (1%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M+Q FL ++ ++ + F+ A L Y L++ +T VIAE+ PAS+TK+
Sbjct: 1 MKQIFLFLLCVSNIVVGQSFVPNAPELNLKSYMLIEPDTNTVIAESNASGLIEPASMTKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTAYVV +K L + IS+ A S + G +++ + LK +I++S ND
Sbjct: 61 MTAYVVADQIKNDLISLDDSVLISEKAWRMGGSKMFIEVGKRVSILDLLKGIIIQSGNDA 120
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+VAIAE + TE FV MN+ + LG++ T F+N+ G+ GH T+ARD+A L+ T
Sbjct: 121 SVAIAEYVGGTEAGFVDLMNSYAGALGMADTTFINSTGLPNEGHLTSARDLATLTSNFMT 180
Query: 180 DFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+FP F+ K E G N N + +DG+KTG T ++G+ ++ SA +G+
Sbjct: 181 NFPDIYALFKEKEFEYGGITGNKYNRNKLLWRDESSDGVKTGHTSSAGYCLIGSAKRGNM 240
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISE 294
LI V+ G+ N + LL GF +K + + ++ +
Sbjct: 241 RLITVVAGSDTANNSFSDTQRLLEYGFRFYATQKYFDADKEYTTAKVWGGKNDNISLGVV 300
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
E + ++ K + ++ L
Sbjct: 301 EDISITLPRTSFKNVKVNFNVKNNVQAPIKRGDKLGTL 338
>gi|319427343|gb|ADV55417.1| Beta-lactamase [Shewanella putrefaciens 200]
Length = 391
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 95/342 (27%), Positives = 153/342 (44%), Gaps = 11/342 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L+I ++++ + A T Y L+D +G +IAE+ NPASLTK
Sbjct: 9 IKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAESNAYESLNPASLTK 68
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K +TISKNA S + G T+ + + + +I++S
Sbjct: 69 MMTSYVIGQEIKAGNVSPEDDVTISKNAWSKNFSDSSKMFIEVGKTVKVADLNRGIIIQS 128
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ SK LG+ ++F N+HG+ H TTA DMA+L
Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSDNHKTTAYDMALLGA 188
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQ 234
+ D P+ + K G K N N + + DG+KTG T +G+N+VASA +
Sbjct: 189 ALIRDVPEEYRVYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 248
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVP 290
LI+V++G R S LL+ GF + + + S
Sbjct: 249 DGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETITPYKAGDNFTTQQIWYGDKSTVDL 308
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + T + + K +K +
Sbjct: 309 GVATDTPITVSRGRAKDLKANFELTKP-LDAPLKKGETVGRL 349
>gi|297180556|gb|ADI16768.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma
proteobacterium HF0010_11B23]
Length = 368
Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats.
Identities = 90/329 (27%), Positives = 157/329 (47%), Gaps = 7/329 (2%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
M + + + + Y L + NT V+ D P PASLTKLMT+YVV ++
Sbjct: 1 MVLSFIVSAAIPNPPDLGVGSYVLYEPNTKKVLVSFNADEPVQPASLTKLMTSYVVADYI 60
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE L IS A + S ++G+ + + + +K +I++S ND +VA+AE +
Sbjct: 61 KEDFIRLDDTPKISIKAWKTEGSRMFIREGTKVAVSDLIKGMIIQSGNDASVALAEHVAG 120
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+E+ F MN + LG+ + F NA G+ + T+A D+A+L+ + +FP++ +
Sbjct: 121 SEENFAYLMNEYASQLGMQNSSFNNASGLPDPLNVTSAYDLALLTSALINNFPEHYKLYS 180
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K G K PN N + DG KTG+ +G+ +V SA++GD L+AV+LG+ D
Sbjct: 181 EKSYTYAGIKQPNRNRLLWRSDIFDGAKTGYHSQAGYCLVGSAMRGDMRLVAVVLGSEDD 240
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTT--QKEI 303
R ++L+ GF + T K + + N ++E++ T + +
Sbjct: 241 K-RFNDVSALMDYGFRHFTTEKLFSKLETYKELKVIAGVKENVPVGLTEDIILTLQKNKR 299
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++ + + EK LK
Sbjct: 300 DDLSFELSLSSQVLAPINAMEKAGTLKVI 328
>gi|153826135|ref|ZP_01978802.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-2]
gi|149740158|gb|EDM54317.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-2]
Length = 391
Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats.
Identities = 89/354 (25%), Positives = 156/354 (44%), Gaps = 20/354 (5%)
Query: 1 MRQFL--------VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + + +++ + F A Y L+D ++G V+AE D
Sbjct: 1 MKKSILKSVLASSITLSITLSGTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ +K L + ISKNA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
D+A+L + D P+ + + G N N + DG+KTG T +G
Sbjct: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA +G+ L+AV++G + N R S LLS GF + +
Sbjct: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T + +K+ +K ++ +
Sbjct: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQ-LKAPLKKGDIVGTLYYQ 353
>gi|328471030|gb|EGF41941.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329]
Length = 389
Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats.
Identities = 98/352 (27%), Positives = 147/352 (41%), Gaps = 18/352 (5%)
Query: 1 MRQ-------FLVIIAMA--MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
MR+ FL +A + A Y L+D +TG V+ E D
Sbjct: 1 MRKNTLFNTTFLTSLATFSHFAFAAPTVVPNAPELSSRGYVLMDYHTGKVLVERDADKRL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNAL 108
NPASLTKLMTAYV + L + IS+NA S + ++++L +
Sbjct: 61 NPASLTKLMTAYVAGQEVNAGNISLDDQVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLY 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ L+V+S ND +VAIAE + +E FV MN+ + LGL+ + F N HG+ G Y+T
Sbjct: 121 RGLVVQSGNDASVAIAEHVAGSEAGFVSLMNSWASQLGLTNSSFTNPHGLDSDGLYSTPH 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A L I D P + G N N + DGMKTG+T +G++
Sbjct: 181 DIAKLGQAIIRDLPDIYPMYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYS 240
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
+ SA GD LIAV++GA ++ R S LLS GF +
Sbjct: 241 LATSATNGDMRLIAVVMGAKSQSVRESESKQLLSYGFRFYDTLMPTAAGTDIANARVWMG 300
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ +V T + N E + + ++ + K
Sbjct: 301 QKDELKVGVNRDVYLTLPKSD-VNKLKAEVEYSGDLLAPIAQDQVVGKVLYK 351
>gi|297581327|ref|ZP_06943251.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385]
gi|297534643|gb|EFH73480.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385]
Length = 391
Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats.
Identities = 89/354 (25%), Positives = 157/354 (44%), Gaps = 20/354 (5%)
Query: 1 MRQFL--------VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + + +++ + S F A Y L+D ++G V+AE D
Sbjct: 1 MKKSILKSVLASSITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ +K L + ISKNA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
D+A+L + D P+ + + G N N + DG+KTG T +G
Sbjct: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA +G+ L+AV++G + N R S LLS GF + +
Sbjct: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T + +K+ ++ ++ +
Sbjct: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQ-LKAPLKRGDVVGTLYYQ 353
>gi|56963557|ref|YP_175288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
gi|56909800|dbj|BAD64327.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
Length = 388
Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats.
Identities = 82/351 (23%), Positives = 154/351 (43%), Gaps = 17/351 (4%)
Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + ++ +L + A+ L++ +TG V+ E D+
Sbjct: 1 MKRKWNVSMLLFVLLFAYAGEAAFAKEKELPQLAENAASAILIERDTGEVLFEKDSDNML 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+MT ++ ++E +T+S+NA+ S + G M++D+ LK +
Sbjct: 61 PPASMTKIMTMLLIMEAIEEGTIKYEDMVTVSENAASMGGSQVFLEPGEEMSVDDLLKAI 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+ S ND AVA+AE + TE++FV+ MN + LGL T F N +G+ + HY++A D+A
Sbjct: 121 AIASGNDAAVAMAEHIGGTEQEFVKMMNAKAAELGLENTQFQNPNGLPEADHYSSAHDLA 180
Query: 172 ILSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+++ + ++ ++ K NTN V + G DG+KTGFT + +
Sbjct: 181 VMAKELLKYENITSYTGIYEDYLRKGTDKEFWLVNTNKLVKFYPGVDGLKTGFTQEAKYG 240
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQ 283
+ A+A + +IAV++GA RN ++L + + + + +
Sbjct: 241 LTATAEKNGMRVIAVVMGAKTPKERNATITNMLDYSYSHYSTERLHERGDLIGEVPVIKG 300
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ E V K+ + + E+ K + I
Sbjct: 301 KDRHVQAITPEPVSLLLKKGTKLEEIETKIELFENVEAPVTKGDAVGQLII 351
>gi|240950037|ref|ZP_04754345.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
minor NM305]
gi|240295515|gb|EER46258.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
minor NM305]
Length = 392
Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats.
Identities = 97/353 (27%), Positives = 164/353 (46%), Gaps = 18/353 (5%)
Query: 1 MRQFLV----IIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L+ + AMA+ S + ++ A Y L+D N+G V+A PD
Sbjct: 1 MKKTLLKSVSLCAMALSSFAYADVNTDFGISAPQLNAQTYILMDYNSGAVLASLNPDQRQ 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNAL 108
PASLTK+MTAYVV +K+ K + +T+++N+ + +++ + +
Sbjct: 61 YPASLTKMMTAYVVGDAIKQGKVRNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVGDLM 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
K LI+ S ND AVA+AE +++ F+ MN ++ GL T+F HG+ +++AR
Sbjct: 121 KGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKYAQQFGLKNTYFTTVHGLDDPNQFSSAR 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-WAVGTFLGADGMKTGFTCASGF 226
DMAI+ + D P+ + K + KK PN N + DGMKTG T +G+
Sbjct: 181 DMAIIGTHVIRDQPEEYKIYAEKEFQYNIKKPQPNRNGLLWDKTMNVDGMKTGHTDKAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQ 282
N+VASA + LI+V++G R S LL GF N K + + Y
Sbjct: 241 NLVASATNSNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLPAGQAIKEESVYY 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T + + + + + D +S K ++ I +
Sbjct: 301 GDANKVQLGSVQDSFITIPKGKSADLKARYELDTKSLEAPLAKGQVVGKVIYQ 353
>gi|146312224|ref|YP_001177298.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter sp. 638]
gi|145319100|gb|ABP61247.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Enterobacter sp. 638]
Length = 394
Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 147/349 (42%), Gaps = 18/349 (5%)
Query: 2 RQFLVIIAM-------AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + +++ A+ ++ F + + L+D TG ++ NPA
Sbjct: 9 RRLFIALSLLASSVTPALAADPLDFSPQPPAIQAGSWVLMDYTTGQILTAGNEHQQRNPA 68
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K G +++ +
Sbjct: 69 SLTKLMTGYVVDRAIDSHRITPDDMVTVGRDAWAKGNPVFDGSSLMFLKAGERVSVRDLS 128
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN + LGL THF HG+ G +++A
Sbjct: 129 RGLIVDSGNDACVALADYVAGGQPQFVNMMNEYVQKLGLRDTHFETVHGLDAPGQHSSAY 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P + H + K L G N N L DG+KTG T +GFN
Sbjct: 189 DLAVLSRAIIHGEPDFYHMYSEKSLTWNGVTQQNRNGLLWDKNLKVDGLKTGHTSGAGFN 248
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAVI+G R + LL G N + ++ K +
Sbjct: 249 LIASAVDGQRRLIAVIMGGESPKGREDQARKLLHWGQQNFDTVQILHNGKKVGTERIWYG 308
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++ + N + K DK+ +
Sbjct: 309 DKEHISLGTDQDFWLALPKAEVANIKAKYVLDKKELEAPIAAHQRVGEI 357
>gi|323702537|ref|ZP_08114200.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
nigrificans DSM 574]
gi|323532511|gb|EGB22387.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
nigrificans DSM 574]
Length = 405
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 128/320 (40%), Gaps = 4/320 (1%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
L+D N+G V+ + PD AS+TKLMT ++ + K LT +
Sbjct: 50 PAQLNTTAESAILMDYNSGQVLFQKDPDTRRPMASVTKLMTMLLICEAEAQGKIKLTDKV 109
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
S++A S + G +T+ L + SAND +VA+AE + +E+ FV MN
Sbjct: 110 VASEHACSMGGSQIFLEPGEQLTIKEMLISIATGSANDASVAMAEQIAGSEEAFVAMMNE 169
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-PQYMHYFQIKGLEIKGKK 199
++ +GL THF N G+ HYT+ARDMA + + + L K
Sbjct: 170 KAQAMGLKNTHFSNPTGLPVENHYTSARDMAKVLRECLRYPVFREVSKIYEYDLRGGEFK 229
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN + + G D KTG+T + F + ASA + LI+V+LG T + + +
Sbjct: 230 LWNTNKLLKWYPGTDAGKTGWTNEAKFCLAASAKRDGLRLISVVLGCPMPKTHFQETMKI 289
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK---EIINYNTQMKEAKDK 316
+ GF + ++ + T +
Sbjct: 290 FNYGFARYKAVNLAEEGQVIKVIKVDKGDLEKVKVITQAPVGLVVAKGQEKTVQGQINLP 349
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ +K ++ N + K
Sbjct: 350 DKLKAPVKKGQVVGNYVVTK 369
>gi|261405987|ref|YP_003242228.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp.
Y412MC10]
gi|261282450|gb|ACX64421.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp.
Y412MC10]
Length = 396
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 90/356 (25%), Positives = 150/356 (42%), Gaps = 24/356 (6%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNK--------------LPYYTLLDTNTGHVIAE 44
M++ L+ + +A+ + S AE N LLD +TG +I E
Sbjct: 1 MKKALIAGFLVLAVGLSSAAVPSYAEENSKPGGGSSQEELAPSARSAILLDADTGTIIYE 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
PAS+TK+MT + + E + T + S+ A+ S + G MT+
Sbjct: 61 KNSHDKLPPASITKVMTMLLTMEAIDEGQLKWTDKVRTSEYAASMGGSQIFLEPGEEMTV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
D LK + + S ND +VA+AE + +E+ FV+ MN + LG+ THF+N +G+ HY
Sbjct: 121 DEMLKGIAMASGNDASVAMAEKIAGSEEGFVKMMNEKAAELGMKDTHFVNCNGLPAENHY 180
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGL----EIKGKKYPNTNWAVGTFLGADGMKTGF 220
T+A D+A++S + + + K NTN V + GADG+KTG+
Sbjct: 181 TSAHDIAVMSRELLKYDQITKYTGAYQDYLRKDSEKPFWLVNTNKLVRFYTGADGLKTGY 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + F + A+A + +AV++GA D TRN + + F T
Sbjct: 241 TSEAKFCLSATAKRDGLRAVAVVMGAPDTKTRNNEVSRMFDYAFSQYTMHSIYKPGEVLG 300
Query: 281 YQQNLSNEVPNIS----EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ VP IS ++ K+ + E + + ++
Sbjct: 301 IVKVQKGNVPEISIQAEKDYSVLVKKGVKNPDIRHEIQLDPNLKAPVAAGQVIGKL 356
>gi|170728041|ref|YP_001762067.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella woodyi ATCC
51908]
gi|169813388|gb|ACA87972.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella woodyi ATCC
51908]
Length = 390
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 156/348 (44%), Gaps = 12/348 (3%)
Query: 1 MRQFLVI--IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ ++ +A + + A T + L+D NTG VIAE NPASLTK
Sbjct: 8 LKSLILATSLASSFVFAAPVVTPNAPTVAAKAFVLMDYNTGQVIAEENAYESLNPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K +TISK A S + G +T+D+ +I++S
Sbjct: 68 MMTSYVIGHEIKVGNISPNDQVTISKKAWSKNFPDSSKMFIEVGKQVTVDDLNHGIIIQS 127
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ +K LG+ ++F N+HG+ H TTA DMAIL
Sbjct: 128 GNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMQDSYFENSHGLDSENHKTTAYDMAILGA 187
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ D P+ ++ K G K N N + DG+KTG T +G+N+V SA +
Sbjct: 188 ALIRDVPEEYVLYKKKSFTYNGIKQYNRNGLLWDKSMHVDGIKTGHTSGAGYNLVTSATK 247
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVP 290
L+AV++G R S +L+ GF + + + +
Sbjct: 248 DGMRLVAVVMGTKSEAARKAESKKILNYGFRFFETITPYKAGDSFVTQKIWYGDKESVDL 307
Query: 291 NISEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ + + + + N + K+ + E + + ++ K
Sbjct: 308 GVTTDTPITINRGQAKNLKANFELTKELTAPLAKGETVGRIYFQLNGK 355
>gi|256821559|ref|YP_003145522.1| Serine-type D-Ala-D-Ala carboxypeptidase [Kangiella koreensis DSM
16069]
gi|256795098|gb|ACV25754.1| Serine-type D-Ala-D-Ala carboxypeptidase [Kangiella koreensis DSM
16069]
Length = 389
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 86/350 (24%), Positives = 150/350 (42%), Gaps = 17/350 (4%)
Query: 2 RQFLVIIAMAMLSNIFPF------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+ ++++ + Y L+D +TG +I EN D PAS
Sbjct: 6 KTLKILLSAGFILAFVANVANAAIQPGKPNVDARSYLLMDYDTGQIIMENNADQKLPPAS 65
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-----PSNSTFKKGSTMTLDNALKL 110
LTK+MT+Y++ L + + + +S+NA S + + +++ +
Sbjct: 66 LTKMMTSYIIGDELHKGNLSMDDKVLVSENAWAQNPKLKGGSLMFIEVNKYVRVEDLYRG 125
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+I++S ND ++A+AE + TE F MN + LG+ THF N+ G GH TTARD+
Sbjct: 126 IIIQSGNDASIAMAEHIAGTEGAFADLMNQYAAKLGMKDTHFENSTGWPAEGHVTTARDL 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIV 229
AIL+ + DFP+ + + G K N N +G L DG+KTG T +G+ +V
Sbjct: 186 AILARALIRDFPEDYKLYAEREFTYNGIKQANRNGLLGDPTLNVDGLKTGHTEEAGYCLV 245
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNL 285
+SA + D LI+V++G R + LL+ GF T+ K ++
Sbjct: 246 SSAEKEDMRLISVVMGTDSEAERAAETRKLLNFGFRFYTNIKPFKAGQSLRTARVWKGAE 305
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++++ T + Q + + ++ K
Sbjct: 306 EEVKVGLAQDAGLTLLKSQKDQIQANYT-IQSQLMAPIRRGQVVGEVFFK 354
>gi|153817207|ref|ZP_01969874.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae NCTC 8457]
gi|227081121|ref|YP_002809672.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2]
gi|229505452|ref|ZP_04394962.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286]
gi|298498936|ref|ZP_07008743.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757]
gi|126512241|gb|EAZ74835.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae NCTC 8457]
gi|227009009|gb|ACP05221.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2]
gi|229357675|gb|EEO22592.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286]
gi|297543269|gb|EFH79319.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757]
Length = 391
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 157/354 (44%), Gaps = 20/354 (5%)
Query: 1 MRQFL--------VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + + +++ + S F A Y L+D ++G V+AE D
Sbjct: 1 MKKSILKSVLASSITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ +K L + ISKNA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
D+A+L + D P+ + + G N N + DG+KTG T +G
Sbjct: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA +G+ L+AV++G + N R S LLS GF + +
Sbjct: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETMAPHKAGETFVNETIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T + +K+ +K ++ +
Sbjct: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQ-LKAPLKKGDVVGTLYYQ 353
>gi|253997624|ref|YP_003049688.1| beta-lactamase [Methylotenera mobilis JLW8]
gi|253984303|gb|ACT49161.1| Beta-lactamase [Methylotenera mobilis JLW8]
Length = 392
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 91/331 (27%), Positives = 149/331 (45%), Gaps = 4/331 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ + ++ + + Y L D N G+VIA+N PASLTK+MTAY
Sbjct: 22 LVATSFTNLAHAGAAQIAPPPSLAVKAYLLKDFNNGYVIAQNNASMRVEPASLTKIMTAY 81
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ F +K L + +S++A + S + T+D L +I+ S ND ++ +
Sbjct: 82 LAFKAVKNGHLQLNQTLPVSEHAWKTEGSKMFIEPNKPATVDELLHGMIIVSGNDASITL 141
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E F Q MN ++ LG+ TH+MNA G+ HYTTA D+A L+ + DFP+
Sbjct: 142 AEGIASSEPLFAQMMNKEAERLGMKNTHYMNATGLPDPQHYTTAEDLATLAMALIRDFPE 201
Query: 184 YMHY-FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ +K K PN N + DGMKTG T ++G+ ++++A + + I+V
Sbjct: 202 EYKRLYSVKEYAYNNIKQPNRNRLLWLDPNVDGMKTGHTESAGYCLISTAKRDNTRYISV 261
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
ILGA R S LL+ GF K+ + K + NE+ + +
Sbjct: 262 ILGAPTDTARATESQKLLNYGFQFFDSALVYKQNKPVSKLKVWKGEVNEINSTTANDLYL 321
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
Y A + +K ++
Sbjct: 322 TLPKGEYANVKAIASSTQPLIAPIKKGQVIG 352
>gi|163801380|ref|ZP_02195279.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4]
gi|159174869|gb|EDP59669.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4]
Length = 388
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 92/347 (26%), Positives = 155/347 (44%), Gaps = 13/347 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+R + + + S+ P L+ + Y L+D +G +IAE PASL
Sbjct: 4 LRTRFTFVCLLLASSCLPALAVVTPNPPQLQAKGYVLMDFQSGAIIAEQNARAGLAPASL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TKLMTAYVV +K + +T+S+NA S + +T+ N ++ +I+
Sbjct: 64 TKLMTAYVVGQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPNDEITIANLMRGVII 123
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+AE + +E FV MN + L L+ T+F+N+HG+ G T+ DMA L
Sbjct: 124 QSGNDACVALAEHVAGSEGAFVSLMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATL 183
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASA 232
I D P+ + K + N N + DG KTG+T +G+++V+SA
Sbjct: 184 MQAIINDVPEVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSA 243
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNE 288
QG LI+V++G + +R S +LLS GF ++ ++ ++S
Sbjct: 244 KQGKMRLISVVMGTPSKQSRITQSKNLLSYGFRFYGTKQVAKQGEVQASAKVWKGDVSKI 303
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ T + + E K ++ + K
Sbjct: 304 DLGFAQDAYLTLPRSLTAGLDKSAVVN-EPLIAPIAKGDVVGKVVWK 349
>gi|229522951|ref|ZP_04412365.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80]
gi|229527763|ref|ZP_04417154.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)]
gi|229334125|gb|EEN99610.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 12129(1)]
gi|229340168|gb|EEO05176.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TM 11079-80]
Length = 389
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 93/345 (26%), Positives = 147/345 (42%), Gaps = 16/345 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + + Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + G+ + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P+ + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSN 287
A G+ LI+V++G+ +R S LLS GF + N +
Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGNKNE 304
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ V T DK + K ++ +
Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDK-NLEAPIAKGDVVGSI 348
>gi|54309028|ref|YP_130048.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
profundum SS9]
gi|46913460|emb|CAG20246.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
profundum SS9]
Length = 404
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 89/342 (26%), Positives = 157/342 (45%), Gaps = 11/342 (3%)
Query: 6 VIIAMAMLSNIFPF-LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++++ + P + A Y L+D NTG V+ E + NPASLTKLMT+YV
Sbjct: 28 FFLSLSLPALAVPTVIPDAPVLGAKGYVLMDYNTGRVLVEKNANVKLNPASLTKLMTSYV 87
Query: 65 VFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+K + IS+NA S + G+ +++ + + LI++S ND +V
Sbjct: 88 AGQEMKRGNISQDDIVVISRNAWARNFSDSSKMFIEVGTEVSMMDLYRGLIIQSGNDASV 147
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
AIAE + ++ FV MN+ +KNLG++ + F NAHG+ Y+T D+A+L + D
Sbjct: 148 AIAEHVAGSQDAFVGLMNSWAKNLGMNNSQFANAHGLDNPNLYSTPYDIALLGQALIKDL 207
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLI 240
P + + N N +G DGMKTG+T +G+++ +SA QG+ LI
Sbjct: 208 PDLYPLYSERSFTYNNITQRNRNGLLGDKSINVDGMKTGYTSGAGYSLASSATQGNMRLI 267
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE- 295
+V++G+ +R S LL+ GF + + + N + +
Sbjct: 268 SVVMGSSSTKSREAESKQLLNYGFRFFSTISPHKKGQEVLNERIWMGNSDTISLGVESDT 327
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
V ++ + +K D + + + + ++ K
Sbjct: 328 YVTLSRNDAKKVTANVKLTHDLMAPIAIGDNVGSIFYQVDGK 369
>gi|188534313|ref|YP_001908110.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99]
gi|188029355|emb|CAO97232.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99]
Length = 402
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 84/337 (24%), Positives = 148/337 (43%), Gaps = 11/337 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + + +A + L+D ++G V+AE+ D +PASLTK+M++YV+
Sbjct: 20 LLLLTVSCAWAQDAPVAPQLDAKAWFLMDFHSGKVLAESNADLRLDPASLTKMMSSYVIG 79
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIA 120
LK K +T+ +A K G + + K ++++S ND +
Sbjct: 80 QALKAGKIGKDDLVTVGNDAWATGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQSGNDAS 139
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+A+ + ++ FV MNN + LGL THF HG+ G ++TARDMA++ + D
Sbjct: 140 IALADYVAGSQDAFVGLMNNYVQTLGLKNTHFKTVHGLDADGQFSTARDMALIGQALIRD 199
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P + K + N N + L DG+KTG T +G N+VASA++GD+ +
Sbjct: 200 VPDEYALHKEKEFTFNNIRQHNRNRLLWSSNLQVDGIKTGHTSGAGNNLVASAVEGDRRM 259
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE 295
I+V+LGA R + S LL+ G N I + + + ++++
Sbjct: 260 ISVVLGAATDAVRFRESEKLLTWGLRNFETVTPIKAGKAFATQRVWYGDRKEVSLGVAQD 319
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + + K ++
Sbjct: 320 AAITLPHGQFKGLKASFTLSQPQLTAPLVKNQVVGTI 356
>gi|297579619|ref|ZP_06941546.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385]
gi|297535265|gb|EFH74099.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC385]
Length = 389
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 92/345 (26%), Positives = 147/345 (42%), Gaps = 16/345 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + + Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + G+ + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P+ + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSN 287
A G+ LI+V++G+ +R S LLS GF + + +
Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ V T DK + K ++ +
Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDK-TLEAPIAKGDVVGSI 348
>gi|153829019|ref|ZP_01981686.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 623-39]
gi|148875448|gb|EDL73583.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 623-39]
Length = 389
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 95/344 (27%), Positives = 153/344 (44%), Gaps = 17/344 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + + Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + G+ + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P+ + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNE 288
A G+ LI+V++G+ +R S LLS GF I NE
Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304
Query: 289 VPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V S + + + ++ N ++ K+ E+ + + +
Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVVGSI 348
>gi|71065253|ref|YP_263980.1| penicillin-binding protein 6 [Psychrobacter arcticus 273-4]
gi|71038238|gb|AAZ18546.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Psychrobacter arcticus 273-4]
Length = 388
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 87/343 (25%), Positives = 159/343 (46%), Gaps = 9/343 (2%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
Q +V ++++M + + Y L+D NTG ++A+ + PASLTK+MT+
Sbjct: 12 QLVVGVSISMSAVMASAAIQQPEMANTAYVLMDYNTGEILAQKNANQALPPASLTKMMTS 71
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDI 119
Y++ L T + +S NA + + ++ + L+ +I++S ND
Sbjct: 72 YIIEQRLASGDLKETDQVLMSPNAWCRGSNSQSCMYVPVNKSASVIDMLRGIIIQSGNDA 131
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+ A+AE + +E F MN ++ +G+ THF+N+ G+ + GH +A D+A LS I
Sbjct: 132 SKAMAEHIAGSEASFAILMNEQAQKIGMKNTHFVNSTGMPEEGHQASALDLAKLSRAIIK 191
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ Y + K G N N + T DG+KTG T A+G+ + AS+ + L
Sbjct: 192 NSGDYYRIYSEKEFTYNGITQGNRNALLATDPTVDGLKTGHTDAAGYCLAASSNREGMRL 251
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNIS 293
I+VI+G + R S LL+ GF + T + ++ + F + V +
Sbjct: 252 ISVIMGTESQQARADQSRELLNWGFGHFTTVTQAPAGQFVSKVPVWFGEAKEIEVVTADN 311
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ TT+ + +T + + E+ ++I + I K
Sbjct: 312 LQILTTKTQKNKISTVIDIPESLEAPIKKGQEIGKMMAVIDGK 354
>gi|15601038|ref|NP_232668.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar
eltor str. N16961]
gi|121587136|ref|ZP_01676912.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80]
gi|121728082|ref|ZP_01681119.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52]
gi|147671927|ref|YP_001215796.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
gi|153823905|ref|ZP_01976572.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
gi|227811892|ref|YP_002811902.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2]
gi|229506574|ref|ZP_04396083.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286]
gi|229510630|ref|ZP_04400110.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
gi|229517239|ref|ZP_04406684.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9]
gi|229606053|ref|YP_002876757.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236]
gi|254850532|ref|ZP_05239882.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10]
gi|298500115|ref|ZP_07009921.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757]
gi|9657668|gb|AAF96181.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121548672|gb|EAX58722.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae 2740-80]
gi|121629630|gb|EAX62051.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V52]
gi|126518573|gb|EAZ75796.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
gi|146314310|gb|ABQ18850.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
gi|227011034|gb|ACP07245.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae M66-2]
gi|227014938|gb|ACP11147.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O395]
gi|229345275|gb|EEO10248.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC9]
gi|229353075|gb|EEO18015.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
gi|229356925|gb|EEO21843.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae BX 330286]
gi|229372539|gb|ACQ62961.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MJ-1236]
gi|254846237|gb|EET24651.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MO10]
gi|297542096|gb|EFH78147.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MAK 757]
Length = 389
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 93/344 (27%), Positives = 147/344 (42%), Gaps = 14/344 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + + Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + G+ + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P+ + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNE 288
A G+ LI+V++G+ +R S LLS GF I NE
Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDTVIQNQRLWYGDKNE 304
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
V S + + + ++ K ++ +
Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDQNLEAPIAKGDVVGSI 348
>gi|51892953|ref|YP_075644.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
IAM 14863]
gi|51856642|dbj|BAD40800.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
IAM 14863]
Length = 403
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 97/326 (29%), Positives = 149/326 (45%), Gaps = 17/326 (5%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ P L++ +G VI + NPAS+TK+MT V F +++ K L P+T
Sbjct: 42 EPVKIESPSAILMEPLSGRVIYQKNAHERRNPASVTKIMTLIVAFDAIRDGKVSLKDPVT 101
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
IS+ A P + G T +L+ L + V SAND AVA+AE + + FV MN
Sbjct: 102 ISEEAKRQPGTTIFADVGETFSLEELLLSVAVGSANDAAVAVAEHVAGSVDAFVALMNKK 161
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-- 199
+K LG++ T FMN G+ GHY+TA D+A++S +P+ + I G E+
Sbjct: 162 AKELGMNDTQFMNPTGLSAEGHYSTAYDIALMSRHAVLHYPELVKLTAIYGAELNVPWRK 221
Query: 200 ------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
N N + + GADG+KTG+T A+G+ + A+A+Q + +IAV++GA RN
Sbjct: 222 NGPKFQLWNNNKLLTWYPGADGLKTGWTQAAGYCLAATAVQNNTRMIAVVMGAESAKQRN 281
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE------VCTTQKEIINYN 307
A LL GF N T + K + V I V +
Sbjct: 282 IEVARLLDYGFANYTAVEIAPADKKFGPVRVARGAVAAIEPVPRAAFGVSVPKGSQDKVK 341
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKI 333
+++ K EK + +
Sbjct: 342 WEVRLPKQ---VAAPLEKGQAVGEIV 364
>gi|320158294|ref|YP_004190672.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
gi|319933606|gb|ADV88469.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
Length = 387
Score = 206 bits (523), Expect = 4e-51, Method: Composition-based stats.
Identities = 90/350 (25%), Positives = 146/350 (41%), Gaps = 16/350 (4%)
Query: 1 MRQFLVIIAMAMLS-------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+ + + + S + Y L+D ++G V+ D NP
Sbjct: 1 MKSIVSLTSALCASVMALSAHAAPTVIPDPPALGAKGYVLMDYHSGEVLVAKNADTQLNP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKL 110
ASLTKLMTAYV + + + IS+NA S + G++++L++ +
Sbjct: 61 ASLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLYRG 120
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
LI++S ND +VAIAE + ++ FV MN+ + LGL + F N HG+ G Y+T RD+
Sbjct: 121 LIIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPRDI 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIV 229
A L I D P + G N N + DGMKTGFT +G+++
Sbjct: 181 AKLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYSLA 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNL 285
SA G+ LI+V++G+ ++R S LLS GF +
Sbjct: 241 TSATSGNMRLISVVMGSNSTSSREAESKQLLSYGFRFFDTVSPTKANQPLADTRIWMGEK 300
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + E++ T + Q + + ++ I K
Sbjct: 301 NQLSVGLKEDIFLTLPKGDTKKLQAELI-YLPDLSAPILRDQVVGQVIYK 349
>gi|299769239|ref|YP_003731265.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
[Acinetobacter sp. DR1]
gi|298699327|gb|ADI89892.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
[Acinetobacter sp. DR1]
Length = 382
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 84/337 (24%), Positives = 145/337 (43%), Gaps = 8/337 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S LS Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 7 IAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSY 66
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + + ++++A S T T+ L+ +I++S ND +
Sbjct: 67 IIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDAS 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA+L+ I D
Sbjct: 127 KAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGLPAEGHYSTAKDMAVLAQHIIKD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + S+ +G LI
Sbjct: 187 SSRYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLI 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEV 296
+VI G N R + +LLS GF N + ++E
Sbjct: 247 SVIFGTDSVNERANQTRTLLSWGFANFETANIQPANQVLAKAKVWFGKEDEVQIGLAENF 306
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
T + N + + + +K ++ +
Sbjct: 307 SVTMPKG-KANGIKTQLVVQPNLNAPLQKGQVVGKLV 342
>gi|300716035|ref|YP_003740838.1| D-alanyl-D-alanine carboxypeptidase [Erwinia billingiae Eb661]
gi|299061871|emb|CAX58987.1| D-alanyl-D-alanine carboxypeptidase [Erwinia billingiae Eb661]
Length = 400
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 94/331 (28%), Positives = 146/331 (44%), Gaps = 11/331 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
S A + L+D N+G V+AE++ D +PASLTK+M +YVV +K
Sbjct: 24 FSTRAEEAPAAPQIDAKAWILMDYNSGKVLAESHADDRLDPASLTKMMASYVVGQAIKAG 83
Query: 73 KAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
K +T+ K+A K G + + K +I++S ND ++A+A+
Sbjct: 84 KITNDDMVTVGKDAWATGNPILQGSSLMFLKPGDRIPVSELNKGIIIQSGNDASIALADY 143
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ ++ FV MNN + LGL THF HG+ G Y+TARDMA++ + D PQ
Sbjct: 144 VAGSQDSFVSLMNNYVQALGLKNTHFKTVHGLDSDGQYSTARDMALIGQALIRDVPQEYA 203
Query: 187 YFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ K N N + L DG+KTG T +G N+VASA+ GDQ LI+V+LG
Sbjct: 204 LHKEKEFTFNRIHQQNRNRLLWSSNLQVDGIKTGHTAGAGNNLVASAVSGDQRLISVVLG 263
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQK 301
+ TR + S LL+ GF I + ++ + T
Sbjct: 264 SPTDATRFRESEKLLTWGFRFYDTVTPIKADKPFSTQRVWYGEKKEVNLGVASDASVTVP 323
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N + + +K ++ N
Sbjct: 324 KGQLKNLKASFTLSQPQLTAPLKKNQVVGNI 354
>gi|254284899|ref|ZP_04959865.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226]
gi|150424902|gb|EDN16679.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae AM-19226]
Length = 389
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 94/344 (27%), Positives = 153/344 (44%), Gaps = 17/344 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + + Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + G+ + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L + D P+ + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGRAMIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNE 288
A G+ LI+V++G+ +R S LLS GF I NE
Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304
Query: 289 VPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V S + + + ++ N ++ K+ E+ + + +
Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVVGSI 348
>gi|149925918|ref|ZP_01914181.1| Serine-type D-Ala-D-Ala carboxypeptidase [Limnobacter sp. MED105]
gi|149825206|gb|EDM84417.1| Serine-type D-Ala-D-Ala carboxypeptidase [Limnobacter sp. MED105]
Length = 397
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 96/330 (29%), Positives = 151/330 (45%), Gaps = 11/330 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + Y LLD TG +AE +PASLTKLMTAY+ F+ L+ K
Sbjct: 30 AAAQSSVMPPPPEIGAKGYMLLDLTTGQTLAEFNSRERLDPASLTKLMTAYMAFAALESK 89
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ + + +S A + S + +T++ L +IV+S ND + AIAE L E
Sbjct: 90 QIRMDQQVPVSPYAWKAEGSRMFIEPNKPVTVEELLYGVIVQSGNDASRAIAELLAGDEN 149
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQIK 191
F MN +K LGL+ T+F N+ G+ HYTTARD+ IL+ RI TDFP+Y + K
Sbjct: 150 NFATLMNQQAKRLGLTDTNFKNSTGLPDPQHYTTARDLGILAKRIITDFPEYYKKMYSTK 209
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGA 246
G + PN N + DGMKTG T ++G+ +V+SA + D+ L++V+LG
Sbjct: 210 EYTYNGIRQPNRNRLLWIDPSVDGMKTGHTESAGYCLVSSANRTLPNGVDRRLLSVVLGT 269
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKE 302
R + S L++ G+ K + + Y+ +++++
Sbjct: 270 TSDQARTQESLKLMNYGYQMFETVKLYSAKQAISTSEVYKGQAKEVKLGVNKDLLINVPR 329
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + K K + T L
Sbjct: 330 GMAKQLKATVEK-KGTLIAPIPAGTELGKL 358
>gi|327485477|gb|AEA79883.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae LMA3894-4]
Length = 389
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 95/344 (27%), Positives = 153/344 (44%), Gaps = 17/344 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + + Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + G+ + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P+ + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNE 288
A G+ LI+V++G+ +R S LLS GF I NE
Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304
Query: 289 VPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V S + + + ++ N ++ K+ E+ + + +
Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVVGSI 348
>gi|254225957|ref|ZP_04919558.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51]
gi|125621491|gb|EAZ49824.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae V51]
Length = 389
Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats.
Identities = 96/344 (27%), Positives = 153/344 (44%), Gaps = 17/344 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + L Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVLPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + G+ + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P+ + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNE 288
A G+ LI+V++G+ +R S LLS GF I NE
Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304
Query: 289 VPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V S + + + ++ N ++ K+ E+ + + +
Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVVGSI 348
>gi|209521266|ref|ZP_03269986.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160]
gi|209498308|gb|EDZ98443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160]
Length = 409
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 86/340 (25%), Positives = 154/340 (45%), Gaps = 15/340 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+++ ++++ + L+D + V+A D PASLTKLMTAY+V
Sbjct: 30 LVLPATLVASSAFAQVPPPGVNARSWVLVDATSNQVLASANADERVEPASLTKLMTAYLV 89
Query: 66 FSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
F L KK + I S+ S + +T+ + + +IV+S ND A+A+
Sbjct: 90 FEALDTKKITMDQSIEPSEAVRRVRNDESRMFIEALKPVTVHDLVYGMIVQSGNDAAIAL 149
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+AILS R+ D+P
Sbjct: 150 AELVGGSEAQFVDMMNKEAQRLGMKHTHFADVNGMPDPQHYTTAGDLAILSARLIRDYPD 209
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GD 236
Y + F +K K PN N + DG+KTG T A+G+ ++ASA +
Sbjct: 210 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRPMPGATDAS 269
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ L++V++G + R + S +L+ G+ + Y+ + +
Sbjct: 270 RRLVSVMMGETKEHDRVQDSLKMLNYGYTAYDTTRLYKANQVVATPRVYKGAQDSVQVGV 329
Query: 293 SEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + Q++ + + +++ K
Sbjct: 330 KGDQYITLPKGAGDKAKPQIELNDPLVAPIANGQQVGTAK 369
>gi|187922505|ref|YP_001894147.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phytofirmans
PsJN]
gi|187713699|gb|ACD14923.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phytofirmans
PsJN]
Length = 409
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 87/340 (25%), Positives = 157/340 (46%), Gaps = 15/340 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
V++ ++++ + L+D + V+A PD PASLTKLMTAY+V
Sbjct: 30 VVLPATLVASTAFAQVPPPAVNARSWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLV 89
Query: 66 FSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
F L+ KK + + S+ S + +T+ + + +I++S ND A+A+
Sbjct: 90 FEALQTKKINMDQTVMPSEAVRRVRTDESRMFIEANKPVTVHDLVYGMIIQSGNDAAIAL 149
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E +FV MNN ++ LG+ THF + +G+ HYTTA D+A+LS R+ DFP
Sbjct: 150 AELVGGSESQFVNMMNNEAQKLGMKNTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPD 209
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GD 236
Y + F +K K PN N + DG+KTG T A+G+ ++ASA +
Sbjct: 210 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDAS 269
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNI 292
+ L++V++G + R + S +L+ G+ + Y+ +
Sbjct: 270 RRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTVRLYKANQVVGTPRVYKGAQDTVQIGV 329
Query: 293 SEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + Q+++ + + +++ K
Sbjct: 330 KSDQYITVPKGMGDKVKPQIEQIDPLIAPIANGQQVGTAK 369
>gi|229514750|ref|ZP_04404211.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
gi|229348730|gb|EEO13688.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
Length = 389
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 95/344 (27%), Positives = 153/344 (44%), Gaps = 17/344 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + + Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + G+ + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P+ + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNE 288
A G+ LI+V++G+ +R S LLS GF I NE
Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304
Query: 289 VPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V S + + + ++ N ++ K+ E+ + + +
Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVVGSI 348
>gi|167759038|ref|ZP_02431165.1| hypothetical protein CLOSCI_01385 [Clostridium scindens ATCC 35704]
gi|167663445|gb|EDS07575.1| hypothetical protein CLOSCI_01385 [Clostridium scindens ATCC 35704]
Length = 435
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 91/321 (28%), Positives = 142/321 (44%), Gaps = 11/321 (3%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
P L++ +TG +I E D PAS+TK+MT ++F L K L ++
Sbjct: 76 AGPQVGAPSAILMEASTGQIIYEKDADEQRPPASVTKIMTLLLIFDALDSGKISLKDEVS 135
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
S+ A+ S + G T T+D +K + V SAND VA+AE +C E++FV+ MN
Sbjct: 136 TSEYAASMGGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEYICGNEEEFVKQMNQR 195
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-- 199
+K LG+ THF+N +G+ GH TTARD+A++S + T +PQ Y I I
Sbjct: 196 AKGLGMENTHFVNCNGLDTDGHLTTARDIALMSRELITTYPQIHDYSMIWMENITHTTKK 255
Query: 200 ------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
NTN V + A G+KTG T + + + A+A + LIAVI+ A D R
Sbjct: 256 GTTEFGLTNTNKLVRQYEYATGLKTGSTDKAKYCVSATAKKDGMELIAVIMAAPDHKQRF 315
Query: 254 KVSASLLSMGF---YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+ +LL+ GF + K + + + T
Sbjct: 316 TDATTLLNYGFGKCNKYEEEKAKSIQPAKVSRGVAETVKVRQKTPFAYVDITGADLKTIE 375
Query: 311 KEAKDKESHFIDFEKITLLKN 331
++ + +K +
Sbjct: 376 RKEALNKKIKAPVKKGDKVGK 396
>gi|153803461|ref|ZP_01958047.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-3]
gi|124121011|gb|EAY39754.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae MZO-3]
Length = 389
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 95/344 (27%), Positives = 153/344 (44%), Gaps = 17/344 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + + Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + G+ + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P+ + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLXSS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNE 288
A G+ LI+V++G+ +R S LLS GF I NE
Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304
Query: 289 VPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V S + + + ++ N ++ K+ E+ + + +
Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVVGSI 348
>gi|126175479|ref|YP_001051628.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS155]
gi|125998684|gb|ABN62759.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Shewanella baltica OS155]
Length = 391
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 95/341 (27%), Positives = 157/341 (46%), Gaps = 12/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L+I + ++ + A + + L+D N+G +IAE+ NPASLTK
Sbjct: 9 IKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNPASLTK 68
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K + +TISKNA S + G+T+ + + + +I++S
Sbjct: 69 MMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRGIIIQS 128
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ +K LG+ ++F NAHG+ H +TA DMA+L
Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTAYDMALLGA 188
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQ 234
+ D P H + K G K N N + + DG+KTG T +G+N+VASA +
Sbjct: 189 ALIRDEPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 248
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
LI+V++G + R S LL+ GF QQ + +
Sbjct: 249 DGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWYGDKSTVDL 308
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ ++ + + K ++ E + L
Sbjct: 309 GVATDTPITISRGRGKDLKANFELTKPLDAPLKKGETVGRL 349
>gi|120597860|ref|YP_962434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sp. W3-18-1]
gi|146293967|ref|YP_001184391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella putrefaciens
CN-32]
gi|120557953|gb|ABM23880.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Shewanella sp. W3-18-1]
gi|145565657|gb|ABP76592.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella putrefaciens
CN-32]
Length = 391
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 95/342 (27%), Positives = 154/342 (45%), Gaps = 11/342 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L+I ++++ + A T Y L+D +G +IAE+ NPASLTK
Sbjct: 9 IKTLLLISSVSLPVYAAQPIVTPDAPTVAAKAYVLMDYYSGQIIAESNAYESLNPASLTK 68
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K +TISKNA S + G T+ + + + +I++S
Sbjct: 69 MMTSYVIGQEIKAGNVSPEDDVTISKNAWSKNFSDSSKMFIEVGKTVKVADLNRGIIIQS 128
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ SK LG+ ++F N+HG+ H TTA DMA+L
Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWSKQLGMRDSYFENSHGLDSDNHKTTAYDMALLGA 188
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQ 234
+ D P+ + K G K N N + + DG+KTG T +G+N+VASA +
Sbjct: 189 ALIRDVPEEYRVYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 248
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVP 290
LI+V++G R S LL+ GF + + + S
Sbjct: 249 DGMRLISVVMGTQSEAARKAESKKLLTYGFRFFETITPYKAGDNFTTQQIWYGDKSTVDL 308
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + T + + K+ +K +
Sbjct: 309 GVATDTPITVSRGRAKDLKANFELTKQ-LDAPLKKGETVGRL 349
>gi|83858300|ref|ZP_00951822.1| penicillin binding protein [Oceanicaulis alexandrii HTCC2633]
gi|83853123|gb|EAP90975.1| penicillin binding protein [Oceanicaulis alexandrii HTCC2633]
Length = 399
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 87/342 (25%), Positives = 145/342 (42%), Gaps = 11/342 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
MR+ L ++A+ +S ++ A + + +LD +G V+ + P PAS++KL
Sbjct: 19 MRRLLCLLALITVSLSPSAMAQSAFDTRASHAVILDYESGDVLFSKNGEEPMPPASMSKL 78
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVK 114
MTA +VF L++ + L T + +S+NA S S + + ++ +IV+
Sbjct: 79 MTALMVFEALEDGRFTLDTSLPVSENAWRRGGAASGSSTMFLDVNSRAEVGDLIRGIIVQ 138
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND + +AE+L TE+ F Q M + LGL + F NA G H +A D+A L+
Sbjct: 139 SGNDACIVVAEALGGTEENFAQMMTERAHELGLESASFANATGWPDPDHRISALDLARLA 198
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
I +PQY + G + N N +G F GADG+KTG T SG+ +VASA +
Sbjct: 199 RHIIETYPQYYDIYSETEFTYNGIRQYNRNPLLGVFDGADGLKTGHTEESGYGLVASAER 258
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVP 290
+ I V G R S L+ F + + + Y
Sbjct: 259 DGERRIVVFNGMDSNRARADESERLMRAAFSEFSTVDLVEAGEVLGDAEVYLGVAPRVEL 318
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + E + ++ ++
Sbjct: 319 RAAENLSFGLHRRDR-DGVTAELVYQAPLHAPVQEGDIVGQL 359
>gi|255655303|ref|ZP_05400712.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Clostridium difficile QCD-23m63]
gi|296451287|ref|ZP_06893027.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile
NAP08]
gi|296880361|ref|ZP_06904324.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile
NAP07]
gi|296259893|gb|EFH06748.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile
NAP08]
gi|296428602|gb|EFH14486.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile
NAP07]
Length = 387
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 91/350 (26%), Positives = 153/350 (43%), Gaps = 18/350 (5%)
Query: 1 MRQFL-VIIAMAMLSNIFPFL---------SIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
M++ +A+ + F + L+D +G ++ E
Sbjct: 1 MKKLASTALAILLAFTPLSFSFANNKENADANQLNISSKSAILMDVGSGQILYEKDAHKK 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PAS+TK+MT ++ L L + +S+ AS S + G T +D LK
Sbjct: 61 LPPASVTKVMTMLLIVEALDSGDIKLDDEVQVSETASSMGGSQIFLEPGETQKVDTLLKG 120
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ V SAND VA+AE L + + FV MN +K L ++ THF N +G+ HYT+A D+
Sbjct: 121 IAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMNDTHFANTNGLPVANHYTSAHDI 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFTCASG 225
A++S + + + GKK NTN + + GA G+KTGFT +
Sbjct: 181 ALMSRELLKHEMISKYLTTWMDKVVVGKKQVTVGLANTNKLIKHYQGATGVKTGFTQEAK 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ--- 282
+ + ASA +G+ L+A LGA R ++SLL+ GF N K +
Sbjct: 241 YCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYGFANYESVKLCSKGDNIATLTLD 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N+V +++E + + K+ + ++ + +K T+L
Sbjct: 301 KADENKVKLVAKEDLNALIKKGSSKEFEKKIEIVKNPKMPIKKGTVLGKI 350
>gi|91781628|ref|YP_556834.1| penicillin-binding protein 6 [Burkholderia xenovorans LB400]
gi|91685582|gb|ABE28782.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Burkholderia xenovorans LB400]
Length = 418
Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats.
Identities = 87/340 (25%), Positives = 155/340 (45%), Gaps = 15/340 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
V++ + ++ + L+D + V+A D PASLTKLMTAY+V
Sbjct: 39 VVLPATLAASTAFAQVPPPAVNARSWVLVDATSNQVLASGNADERVEPASLTKLMTAYLV 98
Query: 66 FSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
F L+ KK + + S+ S + +T+ + + +IV+S ND A+A+
Sbjct: 99 FEALQTKKINMDQTVMPSEAVRRVRTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIAL 158
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+AILS R+ DFP
Sbjct: 159 AELVGGSESQFVNMMNTEAQRLGMKHTHFADVNGMPDPQHYTTAGDLAILSARLIRDFPD 218
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GD 236
Y + F +K K PN N + DG+KTG T A+G+ ++ASA +
Sbjct: 219 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTTDAS 278
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNI 292
+ L++V++G + R + S +L+ G+ + Y+ +
Sbjct: 279 RRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTVRLYKANQVVGTPRVYKGAQDTVQIGV 338
Query: 293 SEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + Q+++ + + +++ +K
Sbjct: 339 KSDQYITVPKGMGDKVKPQIEQIDPLIAPLANGQQVGTVK 378
>gi|153001830|ref|YP_001367511.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS185]
gi|160876563|ref|YP_001555879.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS195]
gi|151366448|gb|ABS09448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS185]
gi|160862085|gb|ABX50619.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS195]
Length = 391
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 95/341 (27%), Positives = 157/341 (46%), Gaps = 12/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L+I + ++ + A + + L+D N+G +IAE+ NPASLTK
Sbjct: 9 IKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNPASLTK 68
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K + +TISKNA S + G+T+ + + + +I++S
Sbjct: 69 MMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRGIIIQS 128
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ +K LG+ ++F NAHG+ H +TA DMA+L
Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTAYDMALLGA 188
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQ 234
+ D P H + K G K N N + + DG+KTG T +G+N+VASA +
Sbjct: 189 ALIRDVPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 248
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
LI+V++G + R S LL+ GF QQ + +
Sbjct: 249 DGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWYGDKSTVDL 308
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ ++ + + K ++ E + L
Sbjct: 309 GVATDTPITISRGRGKDLKANFELTKPLDAPLKKGETVGRL 349
>gi|302392458|ref|YP_003828278.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
DSM 5501]
gi|302204535|gb|ADL13213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
DSM 5501]
Length = 397
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 97/343 (28%), Positives = 152/343 (44%), Gaps = 14/343 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
FL+ ++ ++ + + L++ +G VI E PAS+TK MT
Sbjct: 13 FLLCLSFSLTLSAEELPDPEFDLEAKSAVLMEAKSGKVIYEKNAHEELPPASITKTMTLL 72
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + E KA L +T S+ A+ S + G M L+ +K + + SAND VA+
Sbjct: 73 LTMEAIDEGKANLDEAVTTSEYAAGMGGSQIWLEPGEEMKLEEMIKAIAIVSANDACVAV 132
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-----QHGHYTTARDMAILSWRIK 178
AE L TE+ FV MN + LGL THF+N +G+ + G+YT+A D+ ++S +
Sbjct: 133 AEHLYGTEEVFVNAMNEKADELGLDDTHFVNTNGLPVEDSDKRGNYTSAHDVGVMSRELV 192
Query: 179 TDFPQ--YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
T +PQ I L NTN V + GADG+KTG T +GF +VA+A +
Sbjct: 193 TKYPQVLDYTKIWIDHLRDGDSFLRNTNNLVRFYKGADGLKTGHTSQAGFGVVATAERKG 252
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI-----IKDFYQQNLSNEVPN 291
IAV++ +TR K + LLS GF I + Y+
Sbjct: 253 LRFIAVVMKEETSDTRFKEAGELLSYGFSIYRSVPVIQKGEVAIDEVEIYKGKNPKVKAV 312
Query: 292 ISEEVCTTQKEII--NYNTQMKEAKDKESHFIDFEKITLLKNK 332
+++ + N Q+ +D + EKI L+
Sbjct: 313 ARKDLTAAVIKGNEGNLKRQILVKEDLTAPLKRGEKIGELRVL 355
>gi|307728308|ref|YP_003905532.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
CCGE1003]
gi|307582843|gb|ADN56241.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
CCGE1003]
Length = 409
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 88/340 (25%), Positives = 158/340 (46%), Gaps = 15/340 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
V++ ++S+ + L+D + V+A PD PASLTKLMTAY+V
Sbjct: 30 VVLPATLVSSAAFAQVPPPAVNARSWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLV 89
Query: 66 FSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
F L+ KK + +T + S + +T+ + + +IV+S ND A+A+
Sbjct: 90 FEALQTKKITMDQTVTPGEAVRRVRTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIAL 149
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E +FV MN ++ LG++ THF + +G+ HYTTA D+A+LS R+ DFP
Sbjct: 150 AELVGGSEAQFVNMMNTEAQRLGMTHTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPD 209
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GD 236
Y + F +K K PN N + DG+KTG T A+G+ ++ASA +
Sbjct: 210 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPDAS 269
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNI 292
+ L++V++G + R + S +L+ G+ + Y+ + +
Sbjct: 270 RRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTVRLYKASQVVGTPRVYKGSQDTVQIGV 329
Query: 293 SEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + Q+++ + + +++ K
Sbjct: 330 KSDQYITVPKGMADKVKPQIEQIDPLIAPIANGQQVGTAK 369
>gi|262040030|ref|ZP_06013292.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259042607|gb|EEW43616.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 389
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 90/346 (26%), Positives = 145/346 (41%), Gaps = 19/346 (5%)
Query: 6 VIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+ IA+++L++ P + + + L+D TG V+ NPASLT
Sbjct: 7 LFIAVSLLASSVSCAFAVDLPATVAPPSIQAGSWVLMDYTTGQVLTAGNEHQQRNPASLT 66
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
KLMT YVV + + +T+ K+A K G +++ + + L
Sbjct: 67 KLMTGYVVDRAIDSHRITFDDIVTMGKDAWAKGNPVFDGSSLMFLKPGDRVSVRDLSRGL 126
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
IV S ND VA+A+ + + +FV MN + L L THF HG+ G +++A D+A
Sbjct: 127 IVDSGNDACVALADYVAGGQPQFVALMNQYVEKLHLRDTHFETVHGLDAPGQHSSAYDLA 186
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVA 230
+LS I P H + K L G N N + DG+KTG T +GFN++A
Sbjct: 187 VLSRAIIHGEPDVYHMYSQKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIA 246
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLS 286
SA+ G + LIAV++GA R + +A LL G N + + K + +
Sbjct: 247 SAVDGQRRLIAVVMGADSPKGREQQAAKLLHWGQQNFDTVQVLQKGQKVGTERIWYGDKE 306
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + + K DK+ +
Sbjct: 307 QIKLGTDQDFWLALPKAEVSRIKAKYVLDKKDLEAPIAANQRVGEI 352
>gi|217972275|ref|YP_002357026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS223]
gi|217497410|gb|ACK45603.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella baltica OS223]
Length = 391
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 95/341 (27%), Positives = 156/341 (45%), Gaps = 12/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L+I + ++ + A + + L+D N+G +IAE+ NPASLTK
Sbjct: 9 IKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNPASLTK 68
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K + +TISKNA S + G+T+ + + + +I++S
Sbjct: 69 MMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRGIIIQS 128
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ +K LG+ ++F NAHG+ H +TA DMA+L
Sbjct: 129 GNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTAYDMALLGA 188
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQ 234
+ D P H + K G K N N + DG+KTG T +G+N+VASA +
Sbjct: 189 ALIRDVPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMDVDGIKTGHTSGAGYNLVASATK 248
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
LI+V++G + R S LL+ GF QQ + +
Sbjct: 249 DGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWYGDKSTVDL 308
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ ++ + + K ++ E + L
Sbjct: 309 GVATDTPITISRGRGKDLKANFELTKPLDAPLKKGETVGRL 349
>gi|323940908|gb|EGB37096.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482]
Length = 388
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 155/351 (44%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIQAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAERLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISSHQRVGEI 351
>gi|85058899|ref|YP_454601.1| D-alanyl-D-alanine carboxypeptidase [Sodalis glossinidius str.
'morsitans']
gi|84779419|dbj|BAE74196.1| D-alanyl-D-alanine carboxypeptidase [Sodalis glossinidius str.
'morsitans']
Length = 396
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 92/325 (28%), Positives = 146/325 (44%), Gaps = 11/325 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A Y L+D +G V+AE D +PASLTK+M++YV+ +K K T
Sbjct: 30 APPAAPEINARAYILMDYQSGKVLAEANADQRLDPASLTKIMSSYVIGQAMKAGKIHPTD 89
Query: 79 PITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+TI K+A K G +T+D+ K ++++S ND ++A+A+ + ++
Sbjct: 90 KVTIGKDAWATGNPVLRGSSLMFLKPGEQVTVDDLNKGIVIQSGNDASIALADHVAGSQD 149
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
FV +N ++ LGL THF+ HG+ G Y+TARDMAILS + + P + K
Sbjct: 150 AFVSLINQYAQALGLKNTHFLTVHGLDAEGQYSTARDMAILSQALIRNVPDEYALHKEKE 209
Query: 193 LEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
K PN N L DG+KTG+T +G N+VASA LI+V+LGA
Sbjct: 210 FTYNKIKQPNRNRLLWSGNLTVDGVKTGYTSGAGHNLVASATDNGMRLISVVLGAPTDGI 269
Query: 252 RNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R + S LL+ GF + + + + S ++++ T + N
Sbjct: 270 RFRESEKLLTWGFRFYETVMPVPKDRPFTQQRVWFGDRSQVNLGVAQDAAITLSKGQLKN 329
Query: 308 TQMKEAKDKESHFIDFEKITLLKNK 332
+ K ++
Sbjct: 330 MKASFTLSSPHLEAPLAKDQVVGTI 354
>gi|195941235|ref|ZP_03086617.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
O157:H7 str. EC4024]
Length = 363
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 91/319 (28%), Positives = 142/319 (44%), Gaps = 11/319 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L+D +G V+AE D +PASLTK+MT+YVV LK K L +T+ K
Sbjct: 1 PVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLDDMVTVGK 60
Query: 85 NASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+A K G +++ + K +I++S ND +A+A+ + ++ F+ M
Sbjct: 61 DAWATGNPALRGSSVMFLKPGDQVSVSDLNKGVIIQSGNDACIALADYVAGSQDSFIGLM 120
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LGL+ T F HG+ G ++TARDMA+L + D P + K
Sbjct: 121 NGYAQKLGLTNTTFKTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNI 180
Query: 199 KYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ PN N + + DGMKTG T +G+N+VASA QGD LI+V+LG R S
Sbjct: 181 RQPNRNRLLWSSNVNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGTKTDRIRFNESE 240
Query: 258 SLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
LL+ GF I + + + + S E T N +
Sbjct: 241 KLLTWGFRFFETVTPIKPDATFVSQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASYT 300
Query: 314 KDKESHFIDFEKITLLKNK 332
+ +K ++
Sbjct: 301 LTEPQLTAPLKKGQVVGTI 319
>gi|163852334|ref|YP_001640377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
extorquens PA1]
gi|163663939|gb|ABY31306.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
extorquens PA1]
Length = 418
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 82/337 (24%), Positives = 151/337 (44%), Gaps = 11/337 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ ++ + P + + L+D ++G V+ E D P++PAS+ KLMTA +
Sbjct: 16 MLAAIVSAFLHPAPARAQTFQTAAAHAILIDADSGSVLFEKAADEPFSPASMAKLMTAEI 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDI 119
VF +KE + + T T++++A + + + S + L + L+ LIV+S ND
Sbjct: 76 VFRAIKEGRLSMDTEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 135
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ IAE++ TE F MN +K +GL+ + F NA G TARDMA ++ +
Sbjct: 136 AITIAENMAGTEDAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQHLID 195
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+P++ + + K N N + +GADG+KTG+ SG+ + SA+Q Q L
Sbjct: 196 TYPEFYKIYSEREFTWNKIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 255
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEE- 295
I V+ G R + ++ GF R+ + + VP ++ +
Sbjct: 256 IMVVSGLKTARDRAAEARKMMEWGFRAFEPRQVFAANETVAEVSVFGGEKGSVPVVANKP 315
Query: 296 --VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + ++ + ++ L+
Sbjct: 316 VRLLLPRGTSDRVTAKVVYQGPLVAPVAQGREVGRLR 352
>gi|15640963|ref|NP_230594.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|9655406|gb|AAF94109.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae O1 biovar El
Tor str. N16961]
Length = 391
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 89/354 (25%), Positives = 156/354 (44%), Gaps = 20/354 (5%)
Query: 1 MRQFL--------VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + + +++ + S F A Y L+D ++G V+AE D
Sbjct: 1 MKKSILKSVLASSITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ +K L + ISKNA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
D+A+L + P+ + + G N N + DG+KTG T +G
Sbjct: 181 PYDLALLGQALIRXVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA +G+ L+AV++G + N R S LLS GF + +
Sbjct: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T + +K+ +K ++ +
Sbjct: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQ-LKAPLKKGDIVGTLYYQ 353
>gi|85706300|ref|ZP_01037394.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. 217]
gi|85669073|gb|EAQ23940.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. 217]
Length = 387
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 86/335 (25%), Positives = 145/335 (43%), Gaps = 10/335 (2%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
IA A+L A ++D TG V+ + D PAS++KLMT YV F
Sbjct: 7 IAAALLCLGVALPVQAFETSAKAAFVMDVTTGTVLLDKNADTALPPASMSKLMTLYVAFE 66
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
++ + L + +S++A Y S + +++ L+ +IV S ND IAE+L
Sbjct: 67 AVRSGRLTLDERLPVSEHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEAL 126
Query: 128 CKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
E F + M ++ +G++ + F NA G GH + RD+A+L+ I DFP +
Sbjct: 127 SPDGTEAGFARFMTQRAQQMGMTNSMFRNASGWPAEGHVMSVRDLALLARHIIEDFPDFY 186
Query: 186 HYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
F N N +G +GADG+KTG T +GF + SAIQGD+ +I V
Sbjct: 187 KMFAETEFRFDGRAPSNINNRNPLLGLGIGADGLKTGHTEQAGFGLTGSAIQGDRRVIFV 246
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCT 298
I G R + S ++++ F + + + D + ++ ++E+V T
Sbjct: 247 ISGLATTQDRARESEAIVNWAFRQFAQKSVLTAGDEVARADVWMGETTSVGLTVAEDVST 306
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ + + K +L +
Sbjct: 307 LLPVLDGGELKGEVV-YTGPVRAPVAKGDVLAELV 340
>gi|299132249|ref|ZP_07025444.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
gi|298592386|gb|EFI52586.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
Length = 475
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 110/313 (35%), Positives = 173/313 (55%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ ++ F + A Y L+D N+G V+ PW PASLTK+MTAYV + +
Sbjct: 3 LIAIAAAFSLHASATPAHAEAYLLIDANSGKVLQAENATQPWYPASLTKIMTAYVTLTAV 62
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K+ + L T +T+S NA PS F G+T+T+DNALK+++VKSAND+AV +AE +
Sbjct: 63 KQGRISLDTLLTVSPNAVAQAPSKMGFPAGTTVTVDNALKMMMVKSANDMAVVLAEGVGG 122
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+ + F MN T++ LG++ +HF+N +G+ H ++ARD+ IL+ D P+Y ++
Sbjct: 123 SIEGFAGMMNETARQLGMTQSHFVNPNGLPDDAHISSARDIGILARAFYRDLPEYEYFAH 182
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ G++ + N N +G + GADGMKTGF CASGFN+VASA + D+ LIAV+LGA
Sbjct: 183 LPGIKFGRRVTMNFNKLIGRYPGADGMKTGFICASGFNLVASATRNDKHLIAVVLGAPSS 242
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
R +A LL GF + + + PN+ ++VC ++ +
Sbjct: 243 AQRTIKAAQLLEKGFNHSKLAWLKPSLGTVEQLPPIDAAPPNLRDQVCGPHRKRPAAEDE 302
Query: 310 MKEAKDKESHFID 322
+ + + D
Sbjct: 303 DDDVEITLDNKSD 315
>gi|167856207|ref|ZP_02478943.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus
parasuis 29755]
gi|167852662|gb|EDS23940.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus
parasuis 29755]
Length = 393
Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats.
Identities = 95/322 (29%), Positives = 145/322 (45%), Gaps = 8/322 (2%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
A Y L+D N+G V+A PD PASLTK+MT+YVV LK K + +T
Sbjct: 33 AAPQLNAQTYILMDYNSGAVLASLNPDQHQAPASLTKMMTSYVVGEALKTGKIKNSDLVT 92
Query: 82 ISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+++N+ S +++++ K +IV S ND VAIAE + +E+ F+ M
Sbjct: 93 VTENSWGQKFPGSSKMFLNVNQQVSVEDLNKGIIVVSGNDACVAIAEHISGSEQTFIDSM 152
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + GL THF HG+ Y++ARDMAI+ I D P+ + K
Sbjct: 153 NKFVQKFGLKNTHFATVHGLDHPEQYSSARDMAIIGAHIIRDLPEEYKIYSEKEFTYNKI 212
Query: 199 KYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
PN N + DGMKTG T +G+N+VASA + LI+V++G R S
Sbjct: 213 TQPNRNGLLWDKSINVDGMKTGHTDQAGYNLVASAYNSNTRLISVVMGVPTYKGREVESK 272
Query: 258 SLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
LL GF N K ++ + Y +LS ++ T + + +
Sbjct: 273 KLLQWGFANFETVKPLSAGQSVLEQAVYYGDLSKAQLGTLQDSYITVPKGKTAELKARYT 332
Query: 314 KDKESHFIDFEKITLLKNKITK 335
+K + K ++ I +
Sbjct: 333 LEKTNLEAPLVKGQVVGKVIYQ 354
>gi|260774871|ref|ZP_05883772.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260609126|gb|EEX35284.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 392
Score = 205 bits (521), Expect = 6e-51, Method: Composition-based stats.
Identities = 95/355 (26%), Positives = 152/355 (42%), Gaps = 21/355 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFL------------SIAETNKLPYYTLLDTNTGHVIAENYPD 48
M++ +I ++ S A Y L+D N+G ++AE +
Sbjct: 1 MKKTTLIKSVFASSIALSATFASSSFATPIVVPDAPQIAAKGYVLMDYNSGKILAEKEMN 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLD 105
+PASLTK+MT+YV+ L+ L +TISKNA S + G+T+ ++
Sbjct: 61 TKLSPASLTKMMTSYVIGQELERGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVE 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ +IV+S ND VA+AE + +E FV MN + LG+ THF N HG+ Y+
Sbjct: 121 ELNRGIIVQSGNDACVAMAEHIAGSEDAFVDLMNAWADTLGMKDTHFANVHGLDNPNLYS 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
T DMA+L + D P + K G N N + DG+KTG T +
Sbjct: 181 TPYDMALLGQALIRDVPDEYRIYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNA 240
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDF 280
G+++V+SA +G L+AV++G + N R S LLS GF +
Sbjct: 241 GYSLVSSATEGKMRLVAVVMGTKNANARKSESKKLLSYGFRFFETVAPHKAGETFVEEKI 300
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + ++ T N Q +KE +K ++ +
Sbjct: 301 WMGDKDTVALGLDQDTYVTLPRGQAKNLQASFVLEKE-LEAPIKKGDVVGKLYYQ 354
>gi|153820129|ref|ZP_01972796.1| penicillin-binding protein 6 [Vibrio cholerae NCTC 8457]
gi|255745929|ref|ZP_05419876.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101]
gi|262163513|ref|ZP_06031259.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1]
gi|262168229|ref|ZP_06035927.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27]
gi|126509329|gb|EAZ71923.1| penicillin-binding protein 6 [Vibrio cholerae NCTC 8457]
gi|255735683|gb|EET91081.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101]
gi|262023472|gb|EEY42175.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27]
gi|262028080|gb|EEY46739.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1]
Length = 378
Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats.
Identities = 88/334 (26%), Positives = 141/334 (42%), Gaps = 7/334 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ + + + Y L+D +TG V+ E+ NPASLTKLMT+YV
Sbjct: 4 MAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPASLTKLMTSYVA 63
Query: 66 FSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+K + IS NA S + G+ + L + + LIV+S ND +VA
Sbjct: 64 GQEMKRGNIHADDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLIVQSGNDASVA 123
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
IAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+L I D P
Sbjct: 124 IAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIALLGRAIIRDLP 183
Query: 183 QYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + G N N + DGMKTG+T +G+++ +SA G+ LI+
Sbjct: 184 EIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASSATSGEMRLIS 243
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCT 298
V++G+ +R S LLS GF I NEV S +
Sbjct: 244 VVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDTVIQNQRLWYGDKNEVALGSADTVY 303
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++ K ++ +
Sbjct: 304 LTLPRSDVKKLNAVIQLDQNLEAPIAKGDVVGSI 337
>gi|218289604|ref|ZP_03493824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
acidocaldarius LAA1]
gi|218240254|gb|EED07437.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
acidocaldarius LAA1]
Length = 414
Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats.
Identities = 76/328 (23%), Positives = 139/328 (42%), Gaps = 6/328 (1%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P S+ + L+D TG V+ AS+TK+MT ++F + K
Sbjct: 47 TQPAPASSVDLAKQARSAVLMDFATGKVLYAKNAHERLPMASITKIMTLLLIFEAIDSGK 106
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T + S+ A+ S + G TMT+ + +K + + SAND VA+AE L +E+
Sbjct: 107 LKWTDRVQASERAASMGGSQIFLEPGETMTVRDLVKGIAIASANDACVAMAEHLDGSEEA 166
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY----MHYFQ 189
FV MN +K LG++ THF N +G+ HY++A D+AI+S + ++
Sbjct: 167 FVARMNQRAKELGMTDTHFANCNGLPAPNHYSSAHDIAIMSRALLMHPEVTAFTSVYSDY 226
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
++ NTN V + G DG+KTG+T + + + A+A + +IAV++G
Sbjct: 227 LRKDTDHPLWLVNTNKLVRFYDGVDGLKTGYTQEAKYCLSATAKRDGFRVIAVVMGEPKP 286
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
RN A +L+ F + + + +++
Sbjct: 287 TVRNAEIAGMLNYAFAHYKAVNVYPRGHVVGEVAVKRGTRDRVEAVTAEPVAFVTERSSK 346
Query: 310 MKEAKDKE--SHFIDFEKITLLKNKITK 335
+ + + + ++ + + K
Sbjct: 347 GTYTTEIQWMTLKAPVSRGQVVGHVLVK 374
>gi|90581616|ref|ZP_01237407.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
gi|90437199|gb|EAS62399.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
Length = 391
Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats.
Identities = 88/338 (26%), Positives = 150/338 (44%), Gaps = 9/338 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++A A ++ + A Y L+D N+G ++A + PASLTK+MT+YV+
Sbjct: 16 TLLASATVAASPAVVPEAPQIAAKGYILVDYNSGKILAGHNEYEKLAPASLTKMMTSYVI 75
Query: 66 FSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+K + ISKNA S + G ++ + + + +IV S ND VA
Sbjct: 76 GQEIKNGNISPDDTVVISKNAWAKNFPGSSKMFLEVGKSVKVSDLNRGIIVDSGNDACVA 135
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +++ FV MN +KNLG+ +THF N HG+ + YTT D++IL+ + D P
Sbjct: 136 MAEHVAGSQESFVDLMNGWAKNLGMKSTHFANVHGLDRPDLYTTPYDLSILARSLIRDLP 195
Query: 183 QYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ K G N N + DG+KTG T +G+++V++A +G+ LI+
Sbjct: 196 NEFKIYAEKSFTYNGITQYNRNGLLWDKSMHVDGLKTGHTDNAGYSLVSTATEGNMRLIS 255
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVC 297
V++G +N R S LL+ GF + + + ++E
Sbjct: 256 VVMGTASKNARLAESKKLLNFGFRFYETLSPNKKDQTIETEKVWMGDTDTVNLGVAENTY 315
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T + + KE K ++ +
Sbjct: 316 VTLPRSQAKDLKASFVLTKE-LKAPITKGEVVGKLTYR 352
>gi|53729243|ref|ZP_00133773.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126209060|ref|YP_001054285.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
pleuropneumoniae L20]
gi|165977032|ref|YP_001652625.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|190150927|ref|YP_001969452.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303250838|ref|ZP_07337032.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303253460|ref|ZP_07339602.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248643|ref|ZP_07530657.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307250875|ref|ZP_07532803.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307253259|ref|ZP_07535133.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307257674|ref|ZP_07539433.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307264281|ref|ZP_07545870.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|126097852|gb|ABN74680.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165877133|gb|ABY70181.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|189916058|gb|ACE62310.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302647704|gb|EFL77918.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302650351|gb|EFL80513.1| penicillin-binding protein 5 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306854854|gb|EFM87043.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306857125|gb|EFM89253.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306859246|gb|EFM91285.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306863849|gb|EFM95773.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306870345|gb|EFN02100.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 392
Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 157/353 (44%), Gaps = 18/353 (5%)
Query: 1 MRQFLV--IIAMAMLSNIFPFL-------SIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L+ + A+ + F A Y L+D N+G+V+A PD
Sbjct: 1 MKRTLLKSVSLCALAVSQFATADANVDFGISAPQLNAQTYILMDYNSGNVLASLNPDQRQ 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNAL 108
PASLTK+MT+YVV LK+ K + +T+++N+ + +++ + +
Sbjct: 61 YPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVADLM 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LI+ S ND AVA+AE +++ F+ MN + GL T+F HG+ Y++AR
Sbjct: 121 RGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLKNTNFTTVHGLDDPNQYSSAR 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-WAVGTFLGADGMKTGFTCASGF 226
DMAI+ + D P+ + K + KK PN N + DGMKTG T +G+
Sbjct: 181 DMAIIGVHVIRDQPEEYKIYAEKEFKYNIKKAQPNRNGLLWDKTINVDGMKTGHTSQAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQ 282
N+VASA + LI+V++G R S LL GF N K + + Y
Sbjct: 241 NLVASATNNNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLQAGQAVSEQSVYY 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ T + + + ++++ K ++ I +
Sbjct: 301 GEADKVQLGSIQDSFVTVPKGKASELKARYELERKNLEAPLAKGQVIGKVIYQ 353
>gi|307130748|ref|YP_003882764.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
gi|306528277|gb|ADM98207.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
Length = 399
Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats.
Identities = 88/344 (25%), Positives = 151/344 (43%), Gaps = 16/344 (4%)
Query: 5 LVIIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+V+ A L + P + + L+D +G V+AE+ D +PASLTK+
Sbjct: 10 VVVAAATALMTVSPGLRAEQTPPPPQIEAKAFILIDYASGRVLAESNADARLDPASLTKI 69
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIV 113
M++YV+ +K K +T+ K+A K G + + K +++
Sbjct: 70 MSSYVIGQAIKVGKITPEDKVTVGKDAWATGNPALRGSSLMFLKPGDQIPVSELNKGMVI 129
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND ++A+A+ + ++ FV MN + LGL+ THF+ HG+ G Y+TARDMA L
Sbjct: 130 QSGNDASIALADYVAGSQDAFVSLMNQYAATLGLANTHFLTVHGLDTPGQYSTARDMARL 189
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASA 232
+ + D P K + PN N L DG+KTG+T +G ++VASA
Sbjct: 190 TQALIRDVPGEYALHSEKEFTFNNIRQPNRNRLLWSGNLRVDGVKTGYTGGAGHSLVASA 249
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNE 288
+ D LI+V+LGA R + S LL+ GF + + +
Sbjct: 250 VDSDMRLISVVLGAPSDAVRFRESEKLLTWGFRFFETVTPVRSDAPFTTQRVWFGTEKQV 309
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+++++ T + N + + +K ++
Sbjct: 310 RLSVAQDAALTAPKGQMKNLKASFTLAQPQLKAPLKKGQVVGTI 353
>gi|153830932|ref|ZP_01983599.1| penicillin-binding protein 5 [Vibrio cholerae 623-39]
gi|148873587|gb|EDL71722.1| penicillin-binding protein 5 [Vibrio cholerae 623-39]
Length = 354
Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats.
Identities = 90/354 (25%), Positives = 157/354 (44%), Gaps = 20/354 (5%)
Query: 1 MRQFL--------VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + + +++ + S F A Y L+D ++G V+AE D
Sbjct: 1 MKKSILKSVLASSITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ +K L + ISKNA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
D+A+L + D P+ + + G N N + DG+KTG T +G
Sbjct: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA +G+ L+AV++G + N R S LLS GF + +
Sbjct: 241 YNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T + +K+ +K ++ +
Sbjct: 301 MGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQ-LKAPLKKGDVVGTLYYQ 353
>gi|257465150|ref|ZP_05629521.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
minor 202]
gi|257450810|gb|EEV24853.1| D-alanyl-D-alanine carboxypeptidase fraction A [Actinobacillus
minor 202]
Length = 392
Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats.
Identities = 98/353 (27%), Positives = 161/353 (45%), Gaps = 18/353 (5%)
Query: 1 MRQFLV----IIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L+ + AMA+ S + F A Y L+D N+G V+A PD
Sbjct: 1 MKKTLLKSVSLCAMALSSFAYADVNTDFGISAPQLNAQTYILMDYNSGAVLASLNPDQRQ 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNAL 108
PASLTK+MTAYVV +K+ K + +T+++N+ + +++ + +
Sbjct: 61 YPASLTKMMTAYVVGDAIKQGKVRNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVGDLM 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
K LI+ S ND AVA+AE +++ F+ MN ++ GL T+F HG+ +++A
Sbjct: 121 KGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKYAQQFGLKNTYFTTVHGLDDPNQFSSAH 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-WAVGTFLGADGMKTGFTCASGF 226
DMAI+ + D P+ + K + KK PN N + DGMKTG T +G+
Sbjct: 181 DMAIIGAHVIRDQPEEYKIYAEKEFKYNIKKPQPNRNGLLWDKTMNVDGMKTGHTDKAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQ 282
N+VASA + LI+V++G R S LL GF N K + + Y
Sbjct: 241 NLVASATNANTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLPAGQAIKEESVYY 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
N + ++ T + + + + D +S K ++ I +
Sbjct: 301 GNANKVQLGSVQDSFITIPKGKAADLKARYELDSKSLEAPLAKGQVVGKVIYQ 353
>gi|307246518|ref|ZP_07528590.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307255504|ref|ZP_07537310.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307259955|ref|ZP_07541668.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307262081|ref|ZP_07543735.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306852581|gb|EFM84814.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306861546|gb|EFM93534.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306865983|gb|EFM97858.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306868260|gb|EFN00083.1| D-alanyl-D-alanine carboxypeptidase dacA [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 392
Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats.
Identities = 93/353 (26%), Positives = 157/353 (44%), Gaps = 18/353 (5%)
Query: 1 MRQFLV--IIAMAMLSNIFPFL-------SIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L+ + A+ + F A Y L+D N+G+V+A PD
Sbjct: 1 MKRTLLKSVSLCALAVSQFAIADANVDFGISAPQLNAQTYILMDYNSGNVLASLNPDQRQ 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNAL 108
PASLTK+MT+YVV LK+ K + +T+++N+ + +++ + +
Sbjct: 61 YPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVADLM 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LI+ S ND AVA+AE +++ F+ MN + GL T+F HG+ Y++AR
Sbjct: 121 RGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLKNTNFTTVHGLDDPNQYSSAR 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-WAVGTFLGADGMKTGFTCASGF 226
DMAI+ + D P+ + K + KK PN N + DGMKTG T +G+
Sbjct: 181 DMAIIGVHVIRDQPEEYKIYAEKEFKYNIKKAQPNRNGLLWDKTINVDGMKTGHTSQAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQ 282
N+VASA + LI+V++G R S LL GF N K + + Y
Sbjct: 241 NLVASATNNNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLQAGQAVSEQSVYY 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ T + + + ++++ K ++ I +
Sbjct: 301 GEADKVQLGSIQDSFVTVPKGKASELKARYELERKNLEAPLAKGQVIGKVIYQ 353
>gi|326424426|ref|NP_763548.2| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
gi|319999816|gb|AAO08538.2| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
Length = 391
Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats.
Identities = 90/350 (25%), Positives = 146/350 (41%), Gaps = 16/350 (4%)
Query: 1 MRQFLVIIAMAMLS-------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+ + + + S + Y L+D ++G V+ D NP
Sbjct: 5 MKSIVSLTSALCASVMAFSAHAAPTVIPDPPALGAKGYVLMDYHSGEVLVAKNADTQLNP 64
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKL 110
ASLTKLMTAYV + + + IS+NA S + G++++L++ +
Sbjct: 65 ASLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLYRG 124
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
LI++S ND +VAIAE + ++ FV MN+ + LGL + F N HG+ G Y+T RD+
Sbjct: 125 LIIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPRDI 184
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIV 229
A L I D P + G N N + DGMKTGFT +G+++
Sbjct: 185 AKLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYSLA 244
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNL 285
SA G+ LI+V++G+ ++R S LLS GF +
Sbjct: 245 TSATSGNMRLISVVMGSNSTSSREAESKQLLSYGFRFFDTVSPTKANQPLADTRIWMGEK 304
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + E++ T + Q + + ++ I K
Sbjct: 305 NQLSVGLKEDIFLTLPKGDTKKLQAELI-YLPDLSAPILRDQVVGQVIYK 353
>gi|304410306|ref|ZP_07391925.1| Beta-lactamase [Shewanella baltica OS183]
gi|307301983|ref|ZP_07581741.1| Beta-lactamase [Shewanella baltica BA175]
gi|304351715|gb|EFM16114.1| Beta-lactamase [Shewanella baltica OS183]
gi|306914021|gb|EFN44442.1| Beta-lactamase [Shewanella baltica BA175]
gi|315268757|gb|ADT95610.1| Beta-lactamase [Shewanella baltica OS678]
Length = 425
Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats.
Identities = 95/341 (27%), Positives = 157/341 (46%), Gaps = 12/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L+I + ++ + A + + L+D N+G +IAE+ NPASLTK
Sbjct: 43 IKTLLLISSASLPVYAAQPIITPDAPSVAAKAFVLMDYNSGQIIAESNAYESLNPASLTK 102
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K + +TISKNA S + G+T+ + + + +I++S
Sbjct: 103 MMTSYVIGQEIKAGNVSVDDDVTISKNAWSKNFSDSSKMFIEVGTTVKVGDLNRGIIIQS 162
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ +K LG+ ++F NAHG+ H +TA DMA+L
Sbjct: 163 GNDACVAMAEHIAGTEGAFVDMMNSWAKQLGMRDSYFENAHGLDAENHKSTAYDMALLGA 222
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQ 234
+ D P H + K G K N N + + DG+KTG T +G+N+VASA +
Sbjct: 223 ALIRDVPDEYHIYSEKFYTFNGIKQYNRNGLLWDNSMNVDGIKTGHTSGAGYNLVASATK 282
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
LI+V++G + R S LL+ GF QQ + +
Sbjct: 283 DGMRLISVVMGTQSESARKAESKKLLTYGFRFFETVTPYKAGDSFITQQIWYGDKSTVDL 342
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ ++ + + K ++ E + L
Sbjct: 343 GVATDTPITISRGRGKDLKANFELTKPLDAPLKKGETVGRL 383
>gi|284007887|emb|CBA73817.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
[Arsenophonus nasoniae]
Length = 402
Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats.
Identities = 89/339 (26%), Positives = 149/339 (43%), Gaps = 11/339 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L+ I + ++ + + Y L+D ++G V+ N PD +PASLTK+MT+YV
Sbjct: 18 LLFIFVFPINVYADGPQVTPQLDVKAYVLMDYHSGKVLTANNPDERLDPASLTKIMTSYV 77
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAND 118
V +K K + +T+ ++A K G +++ + + ++++S ND
Sbjct: 78 VGQAIKAGKISVNDLVTVGEDAWATGNPVLHGSSLMFLKPGDRVSVLDLNRGIVIQSGND 137
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + ++ FV MN +LGL THF HG+ G ++TA DMAIL+ +
Sbjct: 138 ACIALADYVAGSQTVFVDLMNQYVTSLGLKNTHFKTVHGLDSEGQFSTAHDMAILTQALI 197
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
D P K K N N L DG+KTG T +G+N++ SA G
Sbjct: 198 RDVPDEYLLHGEKVFTYNKIKQFNRNRLLWSKNLQVDGVKTGHTSGAGYNLITSATNGPM 257
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LIAV+LGA R S LL+ GF T I + + N S +
Sbjct: 258 RLIAVVLGAGSDRIRFTESEKLLNWGFRFFTTVIPITADKPFTTEKVWYGNRSTVLLGTE 317
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ T + + + + + + K ++
Sbjct: 318 KDAAITIPKGREQDLKTTYSLNSDYLKAPLRKNQVVGTI 356
>gi|240139670|ref|YP_002964147.1| putative penicillin binding protein,
beta-lactamase/transpeptidase-like superfamily
[Methylobacterium extorquens AM1]
gi|240009644|gb|ACS40870.1| putative penicillin binding protein,
beta-lactamase/transpeptidase-like superfamily
[Methylobacterium extorquens AM1]
Length = 403
Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats.
Identities = 82/337 (24%), Positives = 151/337 (44%), Gaps = 11/337 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ ++ + P + + L+D ++G V+ E D P++PAS+ KLMTA +
Sbjct: 1 MLAAIVSAFLHPAPARAQTFQTAAAHAILIDADSGSVLFEKAADEPFSPASMAKLMTAEI 60
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDI 119
VF +KE + + T T++++A + + + S + L + L+ LIV+S ND
Sbjct: 61 VFRAIKEGRLSMDTEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 120
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ IAE++ TE F MN +K +GL+ + F NA G TARDMA ++ +
Sbjct: 121 AITIAENMAGTEDAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQYLID 180
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+P++ + + K N N + +GADG+KTG+ SG+ + SA+Q Q L
Sbjct: 181 TYPEFYKIYSEREFTWNKIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 240
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEE- 295
I V+ G R + ++ GF R+ + + VP ++ +
Sbjct: 241 IMVVSGLKTARDRAAEARKMMEWGFRAFEPRQVFAANETVAEVSVFGGEKGSVPVVANKP 300
Query: 296 --VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + ++ + ++ L+
Sbjct: 301 VRLLLPRGTSDRVTAKVVYQGPLVAPVAQGREVGRLR 337
>gi|262395893|ref|YP_003287746.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
gi|262339487|gb|ACY53281.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
Length = 389
Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats.
Identities = 93/333 (27%), Positives = 141/333 (42%), Gaps = 9/333 (2%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
++ + A Y L+D +TG V+ E NPASLTKLMTAYV +
Sbjct: 20 SLAYAAPTVVPNAPELSSRGYVLMDFHTGKVLVERDAHKRLNPASLTKLMTAYVAGQEIN 79
Query: 71 EKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L + IS+NA S + ++++L + + L+V+S ND +VAIAE +
Sbjct: 80 AGNITLDDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLVVQSGNDASVAIAEHV 139
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E FV MN+ + L L+ T F N HG+ G Y+T D+A L I D P
Sbjct: 140 AGSESGFVSLMNSWAAKLELNNTAFTNPHGLDSDGLYSTPYDIAKLGQAIIRDLPDIYPL 199
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ G N N + DGMKTG+T +G+++ SA QGD LIAV++GA
Sbjct: 200 YSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSATQGDMRLIAVVMGA 259
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKE 302
N R S LLS GF + + ++ +V T +
Sbjct: 260 KSENIRESESKQLLSYGFRFYDTVMPTEAGTEVANARVWMGEQDELKVGVANDVYLTLPK 319
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
Q + + + ++ + K
Sbjct: 320 GDVKKLQAEV-EYNGDLVAPISQQQVVGKVLYK 351
>gi|114566158|ref|YP_753312.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114337093|gb|ABI67941.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 381
Score = 205 bits (520), Expect = 9e-51, Method: Composition-based stats.
Identities = 87/339 (25%), Positives = 142/339 (41%), Gaps = 6/339 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
++ + + +++ + K Y L+D ++G V+ PAS+TKLMT
Sbjct: 9 WLVLWVMVFIIAAPTRLEAEVVEVKAESYVLMDADSGKVLLAKNEHKQLAPASMTKLMTL 68
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ L+E K L + S+NA + S + G M+ ++ L + V SAND VA
Sbjct: 69 ILAMEALEEGKVTLKDKVVTSENAWKMGGSQIYLEPGEQMSYEDMLIAIAVGSANDACVA 128
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE L T + FV MN+ +K LGL THF+N++G+ HYT+A DMA++
Sbjct: 129 VAEHLEGTHQNFVDKMNHKAKMLGLKNTHFINSYGLSAPKHYTSAYDMAVIGREALAHPK 188
Query: 183 Q-YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ L K NTN + + GADG KTG+T + + + +A + LI+
Sbjct: 189 ILEYSSIKEYDLRQGEFKLFNTNKLLWWYQGADGFKTGWTDEAKYCLAGTAKRDGLRLIS 248
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVC 297
V++ + +++ + S LL+ GF + I + EEV
Sbjct: 249 VVMASPEKHGNFRDSMQLLNYGFARYAFKSLIGQGKSCGIVKIGKGIEEQVEVLAEEEVG 308
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
T + K K L K
Sbjct: 309 CTVIKGEEKKINSKT-SLLPYVDAPVSKGQKLGEISLYK 346
>gi|218676325|ref|YP_002395144.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus
LGP32]
gi|218324593|emb|CAV26124.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus
LGP32]
Length = 394
Score = 205 bits (520), Expect = 9e-51, Method: Composition-based stats.
Identities = 94/352 (26%), Positives = 149/352 (42%), Gaps = 23/352 (6%)
Query: 1 MRQF----LVIIAMAMLSNIF----------PFLSIAETNKLPYYTLLDTNTGHVIAENY 46
M++F L +++M ++SN + + Y L+D N+G V+ E
Sbjct: 1 MKRFSKYSLPLLSMFIVSNAAIVANTAVAAPSIVPSPPSLGAKGYVLIDFNSGDVLVEKN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMT 103
NPASLTKLMT+YV +K + IS+NA S + + +
Sbjct: 61 AHTKLNPASLTKLMTSYVAGQEMKRGNISADDQVRISENAWAKNFPDSSKMFIEVNTDVA 120
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ + + LI++S ND +VAIAE + ++ FV MN+ + +L L THF NAHG+
Sbjct: 121 MMDLYRGLIIQSGNDASVAIAEHVAGSQDAFVDLMNSWAASLKLENTHFANAHGLDADDL 180
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTC 222
Y+T D+A+L I D P + + N N L DGMKTG+T
Sbjct: 181 YSTPYDIALLGRAIIRDLPDVYGLYSERSFSYNKITQHNRNGLLRDRSLTVDGMKTGYTS 240
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----K 278
+G+++ +SA QG+ LIAV++GA +R S LLS GF +
Sbjct: 241 GAGYSLASSATQGEMRLIAVVMGASSVKSRESDSKQLLSYGFRFFDTLNPHQGGDQVAEE 300
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++E+ T + + E + L
Sbjct: 301 KVWFGAQDTLKLGVAEDTFITLPKSDSKKLTASIDLISE-LKAPISEGQTLG 351
>gi|238784923|ref|ZP_04628922.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC
43970]
gi|238714138|gb|EEQ06151.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC
43970]
Length = 401
Score = 205 bits (520), Expect = 9e-51, Method: Composition-based stats.
Identities = 98/346 (28%), Positives = 155/346 (44%), Gaps = 14/346 (4%)
Query: 1 MRQFLV---IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+++F ++ +A+ + Y L+D N+G V+AE D +PASLT
Sbjct: 10 IKKFTFSAGLLLLALPTAHAADDPAVPPVDAKAYVLMDYNSGKVLAEANGDQRLDPASLT 69
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
K+M++YV+ +K K +T+ K+A K G + L + K +
Sbjct: 70 KIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGI 129
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+++S ND ++A+A+ + ++ FV MNN +K LGL+ T+FM HG+ G Y+TARDMA
Sbjct: 130 VIQSGNDASIALADYVAGSQDSFVGLMNNYAKALGLTNTNFMTVHGLDAPGQYSTARDMA 189
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVA 230
+L + D P+ + K + N N T L DGMKTGFT +G N+VA
Sbjct: 190 VLGQALIRDVPEEYALHKEKEFTFNMIRQINRNRLLWNTNLNVDGMKTGFTTGAGHNLVA 249
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLS 286
SA G LI+V+LGA R S LLS GF I + +
Sbjct: 250 SATDGPMRLISVVLGAPSDRVRFSESEKLLSWGFRFYETVVPIKTTKPFVTQKVWFGDTG 309
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++E+ T + N + D+ K ++
Sbjct: 310 QAELGVAEDAAITIPKGQMKNLKASYKLDQTELRAPLTKHQVVGTI 355
>gi|238762044|ref|ZP_04623017.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii
ATCC 33638]
gi|238699772|gb|EEP92516.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii
ATCC 33638]
Length = 397
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 90/346 (26%), Positives = 151/346 (43%), Gaps = 14/346 (4%)
Query: 1 MRQFLV---IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+++ ++ +++ + Y L+D N+G V+AE D +PASLT
Sbjct: 10 LKKLTFSAGLLFLSLPYAHAADSPVPPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLT 69
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
K+M++YV+ +K K +T+ K+A K G + L + K +
Sbjct: 70 KIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGI 129
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+++S ND ++A+A+ + ++ FV MN +K LGL+ T+FM HG+ G Y+TA DMA
Sbjct: 130 VIQSGNDASIALADYIAGSQDSFVGLMNKYAKALGLNNTNFMTVHGLDAPGQYSTAHDMA 189
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVA 230
+L + D P + K + N N T + DGMKTG+T +G N+VA
Sbjct: 190 VLGQALIRDVPDEYALHKEKEFTFNKIRQINRNRLLWNTNINVDGMKTGYTTGAGHNLVA 249
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLS 286
SA G LI+V+LGA R S LL+ GF I + +
Sbjct: 250 SATDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRFYETVVPIKATKPFVTQKVWFGDTG 309
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++E+ T + N + ++ K ++
Sbjct: 310 QVELGVAEDAAITIPKGQMKNLKASYKLNETELRAPLAKHQVVGTI 355
>gi|255100309|ref|ZP_05329286.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Clostridium difficile QCD-63q42]
Length = 387
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 96/350 (27%), Positives = 158/350 (45%), Gaps = 18/350 (5%)
Query: 1 MRQFL-----VIIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
M++ ++IA+ LS F + L+D +G ++ E
Sbjct: 1 MKKLASTALAILIALTPLSFSFANNKENADANQLNISSKSAILMDVGSGQILYEKDAHKK 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PAS+TK+MT ++ L K L + +S+ AS S + G T +D LK
Sbjct: 61 LPPASVTKVMTMLLIVEALDSGKIKLDDEVQVSETASSMGGSQIFLEPGETQKVDTLLKG 120
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ V SAND VA+AE L + + FV MN +K L ++ THF N +G+ HYT+A D+
Sbjct: 121 IAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMNDTHFANTNGLPVANHYTSAHDI 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFTCASG 225
A++S + + + GKK NTN + + GA G+KTGFT +
Sbjct: 181 ALMSRELLKHEMISKYLTTWMDKVVVGKKQVTVGLANTNKLIKHYQGATGVKTGFTQEAK 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ--- 282
+ + ASA +G+ L+A LGA R ++SLL+ GF N K +
Sbjct: 241 YCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYGFANYESVKLCSKGDNIATLTLD 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N+V +++E T + + K+ + ++ + +K T+L
Sbjct: 301 KADENKVKLVAKEDLNTLIKKGSSKEFEKKIEIVKNPKMPIKKGTVLGKI 350
>gi|218531093|ref|YP_002421909.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
chloromethanicum CM4]
gi|218523396|gb|ACK83981.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
chloromethanicum CM4]
Length = 418
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 82/337 (24%), Positives = 151/337 (44%), Gaps = 11/337 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ ++ + P + + L+D ++G V+ E D P++PAS+ KLMTA +
Sbjct: 16 MLAAIVSAFLHPAPSRAQTFQTAAAHAILIDADSGSVLFEKAADEPFSPASMAKLMTAEI 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDI 119
VF +KE + + T T++++A + + + S + L + L+ LIV+S ND
Sbjct: 76 VFRAIKEGRLSMDTEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 135
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ IAE++ TE F MN +K +GL+ + F NA G TARDMA ++ +
Sbjct: 136 AITIAENMAGTEDAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQYLID 195
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+P++ + + K N N + +GADG+KTG+ SG+ + SA+Q Q L
Sbjct: 196 TYPEFYKIYSEREFTWNKIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 255
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEE- 295
I V+ G R + ++ GF R+ + + VP ++ +
Sbjct: 256 IMVVSGLKTARDRAAEARKMMEWGFRAFEPRQVFAANETVAEVSVFGGEKGSVPVVANKP 315
Query: 296 --VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + ++ + ++ L+
Sbjct: 316 VRLLLPRGTSDRVTAKVVYQGPLVAPVAQGREVGRLR 352
>gi|50121610|ref|YP_050777.1| penicillin-binding protein 6 [Pectobacterium atrosepticum SCRI1043]
gi|49612136|emb|CAG75586.1| penicillin-binding protein 6 [Pectobacterium atrosepticum SCRI1043]
Length = 401
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 93/338 (27%), Positives = 152/338 (44%), Gaps = 11/338 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
V++ A+ L + L+D ++G V+AE+ D +PASLTK+M +YV+
Sbjct: 18 VLLVGAVPFTYAEQLPAVPQIDAKAFILIDHDSGKVLAESNADERLDPASLTKIMASYVI 77
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDI 119
LK K T +T+ K+A K G + + K ++++S ND
Sbjct: 78 GQALKSGKIRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSGNDA 137
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
++A+A+ + ++ FV MNN +K L L+ THF+ HG+ G Y+TARDMA+L +
Sbjct: 138 SIALADYVAGSQDSFVSLMNNYAKALNLTNTHFLTVHGLDAPGQYSTARDMALLGQALIR 197
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N T L DG+KTG T +G N+VASA +G+
Sbjct: 198 DVPEEYALHKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEGNMR 257
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
LI+V+LGA + R + S LL+ GF I + + +++
Sbjct: 258 LISVVLGAQTDSIRFRESEKLLTWGFRFFETVTPIKSDAPFTTQRVWFGTEKEARLGVAQ 317
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + N + + K ++
Sbjct: 318 NAALTIPKGQMKNLKASFTLNPPQLSAPLTKNQVVGTI 355
>gi|171320084|ref|ZP_02909152.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
MEX-5]
gi|171094681|gb|EDT39727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
MEX-5]
Length = 437
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 84/336 (25%), Positives = 148/336 (44%), Gaps = 14/336 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ P + L+D + V+A D PASLTKLMTAY+VF
Sbjct: 62 FTGAPATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEA 121
Query: 69 LKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L +KK + +T S+ S + +++ + + +I++S ND A+A+AE
Sbjct: 122 LDKKKISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAEL 181
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E +FV MN ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY
Sbjct: 182 VGGSEGQFVTLMNAEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYG 241
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLI 240
F K + + N N + DG+KTG T A+G+ ++ASA + G + L+
Sbjct: 242 IFSEKEFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLV 301
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE- 295
+V++G R + S +L+ G+ + Y+ + + +
Sbjct: 302 SVMMGEPKEGERTQDSMKMLNYGYSAFDAVRLFKGGQAMSTPRVYKGKENTVQVGVKSDQ 361
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
V + ++ + + +++ +K
Sbjct: 362 WVTVPRGLGDKVKPEVDVNAPLIAPLAEGQQVGTVK 397
>gi|23099297|ref|NP_692763.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis
HTE831]
gi|22777526|dbj|BAC13798.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Oceanobacillus iheyensis HTE831]
Length = 388
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 155/353 (43%), Gaps = 19/353 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK---------LPYYTLLDTNTGHVIAENYPDHPW 51
MR+ I+ + +L +F +++ L++ +TG ++ +
Sbjct: 1 MRKIRNIMIIGLLGVLFFGHTVSAEESNQEVNLIEDATSGILMEQDTGTILYDKNAHEQL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+MT ++ L++ + +S A+ S + G MT+++ LK +
Sbjct: 61 PPASMTKIMTLLLIMESLEKGDIAKDDVVIVSDKAASMGGSQIFLEAGEEMTVNDLLKGV 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
V S ND +VA+AE + +E+ FV MN +K L L T F N G+ + HY++A DMA
Sbjct: 121 AVASGNDASVALAEKIAGSEEAFVNKMNEKAKELNLKNTLFQNTTGLPEENHYSSAYDMA 180
Query: 172 IL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
I+ T++ + ++ + NTN V + GADG+KTG+T + +
Sbjct: 181 IMANELLKHESITEYTSIYEDY-LRQGQDNEFWLVNTNKLVRFYKGADGLKTGYTSEAKY 239
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ A+A + + ++AV++GA RN + LL F++ + K L
Sbjct: 240 CLTATAKRDNMRVVAVVMGAKSPKERNSMVTELLDYAFHSYETNPLFSKGDKVTEVDLLK 299
Query: 287 NEVPNISE----EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + V T K+ E K +ES +K + I K
Sbjct: 300 ADQSKVDIVTDHSVSTIHKKGDEKKNISTEVKLQESWTFPIQKGDEVGKLIIK 352
>gi|296272811|ref|YP_003655442.1| beta-lactamase [Arcobacter nitrofigilis DSM 7299]
gi|296096985|gb|ADG92935.1| Beta-lactamase [Arcobacter nitrofigilis DSM 7299]
Length = 389
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 102/353 (28%), Positives = 163/353 (46%), Gaps = 17/353 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M++ + I + + E K Y L+D +T ++ D P
Sbjct: 1 MKKIICSIFIITSLLAQCLQADEEKSIQPLINIKAKSYILMDYDTKEILLSKNTDEKLPP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
ASLTKLMT+Y+V + + + L + ISK A + S + + + L +K +IV
Sbjct: 61 ASLTKLMTSYIVSTKINSGEISLKDKVFISKKAWKMTGSRTFLNVNTKVDLSKLIKGMIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND +AIAE + +EK+FV+ MN +K L L TH+ +A G+ HY+TA D+A+L
Sbjct: 121 QSGNDAVIAIAEHISGSEKEFVKLMNKYAKKLNLKNTHYNDATGLPTKDHYSTAHDIALL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
S I DFP + ++ IK + N N + DG+KTG T A+G+ + +SA
Sbjct: 181 SRAIIKDFPDHYSWYSIKNFKYNNISQNNRNKLLWKDTSVDGLKTGHTMAAGYCLASSAK 240
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVP 290
+ + LIAV++G R K S LL+ GF K I K + NEV
Sbjct: 241 RKNMRLIAVVMGTKSSKARAKESEKLLNYGFKYYDTHKLYTANSIIKKSKIWEGKKNEVS 300
Query: 291 NISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITL----LKNKITKK 336
++ + + + +T + K + +K+ L +KI KK
Sbjct: 301 LGLDKDLTITIIRSQNKQLHTAINIKKPIIATVNKGQKLGTIEVYLGDKILKK 353
>gi|293609746|ref|ZP_06692048.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828198|gb|EFF86561.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 397
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 81/337 (24%), Positives = 144/337 (42%), Gaps = 8/337 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S LS Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 22 IAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSY 81
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + + ++++A S T T+ L+ +I++S ND +
Sbjct: 82 IIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDAS 141
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K +G+ T F+N+ G+ GHY+TA+DMA+L+ I D
Sbjct: 142 KAMAEHIAGNEGTFAHMMNQEAKRIGMVNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKD 201
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + S+ +G LI
Sbjct: 202 SSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLI 261
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEV 296
+VI G + R + +LL+ GF N + ++E
Sbjct: 262 SVIFGTPSMSERADQTRTLLAWGFANFETANVQPANQVLAKAKVWFGKEDEVQVGLAENF 321
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
T + + + + + +K ++ +
Sbjct: 322 SVTMPKG-KADGIKTQLVVQPNLNAPLQKGQVVGKLV 357
>gi|260912849|ref|ZP_05919335.1| D-alanyl-D-alanine carboxypeptidase DacA [Pasteurella dagmatis ATCC
43325]
gi|260633227|gb|EEX51392.1| D-alanyl-D-alanine carboxypeptidase DacA [Pasteurella dagmatis ATCC
43325]
Length = 395
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 95/344 (27%), Positives = 153/344 (44%), Gaps = 13/344 (3%)
Query: 5 LVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
L+ A A+ N F A Y L+D N+G V+A PD PASLTK+M
Sbjct: 13 LLAGAFALPINAFAQDVDYGITAPQLNAQTYILMDYNSGAVLASLNPDQRQYPASLTKMM 72
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSAN 117
T+YVV LK+ K +TI ++A S +++ + + +I+ S N
Sbjct: 73 TSYVVGDALKQGKINNNDMVTIGESAWGKNFPGSSKMFLNLNQQVSVSDLNRGVIIVSGN 132
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D +VAIAE + + FV+ MN + GL THF + HG+ Y+++RDMAI+ +
Sbjct: 133 DASVAIAEHVSGSVPAFVEAMNKYVQQFGLKNTHFTSVHGLDDDNQYSSSRDMAIIGAHL 192
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ-G 235
D P+ + K K N N + DG+KTG T +G+N+V+SA
Sbjct: 193 IRDLPEEYKIYAEKDFTFNKIKQNNRNGLLWDKTIQVDGIKTGHTDKAGYNLVSSATNSN 252
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPN 291
+ LI+V++G R S LL GF N K + + Y ++S+
Sbjct: 253 NMRLISVVMGVPTIKGREVESKKLLQWGFANFETFKTLEAGKAISEQSVYYGDISDVALG 312
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ E+ T + N + + + D + K ++ + +
Sbjct: 313 VLEDSFITVPKGRNTDLKARYELDTKYLQAPLAKGQVVGKVVYQ 356
>gi|254227305|ref|ZP_04920737.1| beta-lactamase, putative [Vibrio sp. Ex25]
gi|262396428|ref|YP_003288281.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
gi|151939917|gb|EDN58743.1| beta-lactamase, putative [Vibrio sp. Ex25]
gi|262340022|gb|ACY53816.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
Length = 385
Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats.
Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 13/347 (3%)
Query: 1 MR----QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M+ +++++ + + K Y L+D +G +IAE+ PASL
Sbjct: 1 MKVSLARWIIVTCLISVPTFAVVTPNPPQLKAKGYVLMDFQSGAIIAEHNGRAGLAPASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+
Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L
Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSEGIQTSPTDMAKL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASA 232
I D P + K + N N + DG KTG+T +G+++V+SA
Sbjct: 181 MQSIINDVPAVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNE 288
+G LI+V++G + R S +LLS GF ++ + ++ N +
Sbjct: 241 KEGKMRLISVVMGTPSKQARTSQSKNLLSYGFRFYDTKQVAKQGQVESKVRVWKGNANQV 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + T + + E + + + K
Sbjct: 301 EAIFANDAYLTLPRSMTAGLDKSVVLN-EPLIAPIAQGDEIGKVVWK 346
>gi|37676160|ref|NP_936556.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
gi|37200701|dbj|BAC96526.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
Length = 391
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 89/350 (25%), Positives = 146/350 (41%), Gaps = 16/350 (4%)
Query: 1 MRQFLVIIAMAMLS-------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+ + + + S + Y L+D ++G V+ D NP
Sbjct: 5 MKSIVSLTSALCASVMAFSAHAAPTVIPDPPALGAKGYVLMDYHSGEVLVAKNADTQLNP 64
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKL 110
ASLTKLMTAYV + + + IS+NA S + G++++L++ +
Sbjct: 65 ASLTKLMTAYVAGQEMNRGNIRFSDQVVISRNAWAKNFPDSSKMFIEVGTSVSLEDLYRG 124
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
LI++S ND +VAIAE + ++ FV MN+ + LGL + F N HG+ G Y+T RD+
Sbjct: 125 LIIQSGNDASVAIAEHVAGSQDAFVSLMNSWADKLGLQNSAFTNPHGLDSTGLYSTPRDI 184
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIV 229
A L I D P + G N N + DGMKTGFT +G+++
Sbjct: 185 AKLGQAIIRDLPSVYPMYSETSFTYNGITQYNRNGLLRDRSIAVDGMKTGFTSGAGYSLA 244
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNL 285
SA G+ LI+V++G+ ++R S LLS GF +
Sbjct: 245 TSATSGNMRLISVVMGSNSTSSREAESKQLLSYGFRFFDTVSPTKANQPLADTRIWMGEK 304
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + E++ T + Q + + ++ + K
Sbjct: 305 NQLSVGLKEDIFLTLPKGDTKKLQAELI-YLPDLSAPILRDQVVGQVVYK 353
>gi|319785898|ref|YP_004145373.1| beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
gi|317464410|gb|ADV26142.1| Beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
Length = 407
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 84/323 (26%), Positives = 151/323 (46%), Gaps = 11/323 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
++ + ++D TG V+A D PAS+TK+MT+YV+ + + + + +S+
Sbjct: 52 PSQATAWLVMDYATGQVLAGENVDEQVEPASITKVMTSYVIAAEMAAGRVKPDDQVLMSE 111
Query: 85 NASEYPPSNST-----FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
A + + F T L K + V+S ND A+A+AE + T++ F MN
Sbjct: 112 RAWREGGARTDGSFSGFPVNQTAPLVEMEKGMAVQSGNDAAIALAEHVAGTQEAFADLMN 171
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+ + +G+ +HF+NAHG+ GHY+TARD+A+L D+P+ Y +IK + G
Sbjct: 172 SYAAKIGMKNSHFVNAHGLSAEGHYSTARDLALLGRAFVRDYPEQYGYNKIKEFTVNGIT 231
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
PN N + DG+KTG +G+ +++SA +GDQ L+AV++G R S +L
Sbjct: 232 QPNRNLLLWRDSSVDGIKTGHHSKAGYCLMSSAQRGDQRLVAVLMGGASERQRADDSLAL 291
Query: 260 LSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEA 313
L+ GF + ++ ++E V + + M+
Sbjct: 292 LNWGFRFHETHRLYEPGKPVASLKVWKGKADQVQLGVAEPLLVSVGRGRYGDLKPAMEVP 351
Query: 314 KDKESHFIDFEKITLLKNKITKK 336
+ + ++I +K + +
Sbjct: 352 RSLVAPIAAGQQIGTVKVSLDGQ 374
>gi|260769394|ref|ZP_05878327.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii CIP 102972]
gi|260614732|gb|EEX39918.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii CIP 102972]
Length = 390
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 96/335 (28%), Positives = 148/335 (44%), Gaps = 7/335 (2%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ A + Y L+D NTG V+ E+ + NPASLTKLMT+YV
Sbjct: 17 LLSATSFAAPIVVPNPPQLSAKGYVLMDYNTGQVLVEHNANEKMNPASLTKLMTSYVAGQ 76
Query: 68 FLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+K T +TIS+ A S + G+++ + + + LIV+S ND +VAIA
Sbjct: 77 EMKRGNIKPTDQVTISQKAWAKNFPDSSKMFIEVGTSVNMMDLYRGLIVQSGNDASVAIA 136
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + +E FV MN+ ++ LGL+ T F N HG+ G YTT D+A L+ I D P+
Sbjct: 137 EHVAGSENAFVDLMNSWAQRLGLNNTAFTNPHGLDSDGLYTTPYDIAKLAQAIIRDLPEI 196
Query: 185 MHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ G N N + DGMKTGFT +G+++V SA G+ LI+ +
Sbjct: 197 YPIYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGYSLVTSATNGNMRLISAV 256
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+GA +R S LLS GF + E +++ V T
Sbjct: 257 MGANSMKSRESDSKQLLSYGFRFFDTVAPHKQGETIENARVWMGERDDLAIGVAQTTYLT 316
Query: 304 INYNTQMKEAKDKE---SHFIDFEKITLLKNKITK 335
+N + + E ++ ++ I +
Sbjct: 317 VNKGEMSQLSGLIELDRDLKAPIQQGDVVGKVIYQ 351
>gi|209694545|ref|YP_002262473.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanin
carboxypeptidase fraction A) [Aliivibrio salmonicida
LFI1238]
gi|208008496|emb|CAQ78667.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanin
carboxypeptidase fraction A) [Aliivibrio salmonicida
LFI1238]
Length = 391
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 90/346 (26%), Positives = 150/346 (43%), Gaps = 12/346 (3%)
Query: 1 MRQFLV---IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+++ ++ I+ + + A Y L+D ++G V+AE + NPASLT
Sbjct: 8 LKRIILSSFILGSTVAVAAPAVIPNAPQIAAKGYVLMDYHSGKVLAEKDMNVRMNPASLT 67
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVK 114
K+MT+YV+ + + + ISKNA S + GS + + + + +IV+
Sbjct: 68 KMMTSYVIGQEIASGNISMDDDVVISKNAWAKNFPGSSKMFIEVGSVVKVRDLNQGIIVQ 127
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND VA+AE + +E FV MN SK L L THF N HG+ + Y+T DMA++
Sbjct: 128 SGNDACVAMAEHVAGSEDAFVDLMNAWSKTLNLQNTHFANVHGLDRDDLYSTPYDMALIG 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ D P+ + K G N N + DG+KTG T +G+N+V+SA
Sbjct: 188 QALIRDVPEEYRVYSEKSYTYNGITQYNRNGLLWDKSMNVDGIKTGHTDGAGYNLVSSAT 247
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEV 289
+G L+AV++G N R S LL+ GF + + + +
Sbjct: 248 EGKMRLVAVVMGTKSGNARKAESKKLLNYGFRFFETVSPHKANETFVTEKVWMGSTDEVA 307
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++E+ T +K + K ++ +
Sbjct: 308 LGVAEDTYVTLPRGQAKKMTASFVLEK-TLKAPISKGDVVGKLFYQ 352
>gi|269965808|ref|ZP_06179903.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
gi|269829543|gb|EEZ83782.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
Length = 385
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 88/347 (25%), Positives = 154/347 (44%), Gaps = 13/347 (3%)
Query: 1 MR----QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M+ ++ ++ + + + Y L+D +G +IAE+ PASL
Sbjct: 1 MKVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+
Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L
Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASA 232
I +D P + K + N N + DG KTG+T +G+++V+SA
Sbjct: 181 MQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNE 288
+G LI+V++G + R S +LLS GF ++ + ++ N +
Sbjct: 241 KEGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYNTKQVAKKGEVESKVRVWKGNANQV 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ T + + E + + + K
Sbjct: 301 EAIFAKDAYLTLPRSMTAGLDKSVVLN-EPLIAPIAQGDEIGKVVWK 346
>gi|262278278|ref|ZP_06056063.1| D-Ala-D-Ala-carboxypeptidase [Acinetobacter calcoaceticus RUH2202]
gi|262258629|gb|EEY77362.1| D-Ala-D-Ala-carboxypeptidase [Acinetobacter calcoaceticus RUH2202]
Length = 382
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 80/337 (23%), Positives = 142/337 (42%), Gaps = 8/337 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S LS Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 7 IAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSY 66
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + ++++A S T T+ L+ +I++S ND +
Sbjct: 67 IIEQKLLKGDLTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDAS 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K +G+ T F+N+ G+ GHY+TA+DMA+L+ I D
Sbjct: 127 KAMAEHIAGNEGTFAHMMNQEAKRIGMVNTQFVNSTGMPAEGHYSTAKDMAVLAQHIIKD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + S+ +G L+
Sbjct: 187 SSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLV 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEV 296
+VI G R + +LL+ GF N + ++E
Sbjct: 247 SVIFGTPSMAERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKEDEVQVGLAENF 306
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
T + + + + + +K ++ +
Sbjct: 307 SVTMPKG-KADGIKTQLVVQPNLNAPLQKGQVVGKLV 342
>gi|257439156|ref|ZP_05614911.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium
prausnitzii A2-165]
gi|257198407|gb|EEU96691.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium
prausnitzii A2-165]
Length = 412
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 93/317 (29%), Positives = 143/317 (45%), Gaps = 12/317 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L++ TG V+ E PD AS+TKLMT + F ++ K L TP+ +S+
Sbjct: 60 QLECRAAILMEPETGRVLYEKAPDERMPIASITKLMTLLLTFEAIRGGKLTLDTPVPVSE 119
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A S + G TLD L+ + V SAND AVA+AE + +E FV+ MN +
Sbjct: 120 HAYHMGGSQIWLEPGEQFTLDEMLRAICVSSANDAAVAVAELVGGSEPVFVEQMNARAAE 179
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ--YMHYFQIKGLEIKGKKYPN 202
LG++ T F NA G+ GH +TARD+AILS + P+ + L + N
Sbjct: 180 LGMTNTTFRNACGLDTEGHLSTARDVAILSRYLLNTCPELLHYTGIWTDSLRNGQTQLVN 239
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
TN + + G G+KTG T +G I ASA + +LIAV+LG+ R + +LL
Sbjct: 240 TNKLLRRYSGITGLKTGTTSGAGVCISASATRDGLTLIAVVLGSPSSADRFHSATTLLDY 299
Query: 263 GFYNKTDRKKINYIIKDF---YQQNLSNEVPN----ISEEVCTTQKEIINYNTQMKEAKD 315
GF N + + + + VP + E + + ++
Sbjct: 300 GFANYAAAPLPTLPERPLELAVKGSAEDSVPLDYAALPETILIEKGTASALRAELTLP-- 357
Query: 316 KESHFIDFEKITLLKNK 332
E+ EK +
Sbjct: 358 -EALEAPVEKGQTVGKV 373
>gi|323936908|gb|EGB33191.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520]
Length = 388
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKNLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|115352994|ref|YP_774833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
AMMD]
gi|115282982|gb|ABI88499.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Burkholderia ambifaria AMMD]
Length = 436
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 86/336 (25%), Positives = 148/336 (44%), Gaps = 14/336 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ P + L+D + V+A D PASLTKLMTAY+VF
Sbjct: 61 FTGAPATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEA 120
Query: 69 LKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L +KK + IT S+ S + +++ + + +I++S ND A+A+AE
Sbjct: 121 LDKKKISMEQIITPSEAVRRVGLDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAEL 180
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E +FV MN ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY
Sbjct: 181 VGGSEGQFVTLMNAEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYG 240
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLI 240
F K + + N N + DG+KTG T A+G+ ++ASA + G + L+
Sbjct: 241 IFSEKEFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLV 300
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE- 295
+V++G R + S +L+ G+ + Y+ S + +
Sbjct: 301 SVMMGEPKEGERTQDSMKMLNYGYSAFDAVRLFKGGQAMSTPRVYKGKESTVQVGVKSDQ 360
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
V + ++ + + +++ +K
Sbjct: 361 WVTVPRGLGDKVKPEVDVNAPLIAPLAEGQQVGTVK 396
>gi|254562080|ref|YP_003069175.1| penicillin binding protein, beta-lactamase/transpeptidase-like
superfamily [Methylobacterium extorquens DM4]
gi|254269358|emb|CAX25324.1| putative penicillin binding protein,
beta-lactamase/transpeptidase-like superfamily
[Methylobacterium extorquens DM4]
Length = 403
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 81/337 (24%), Positives = 151/337 (44%), Gaps = 11/337 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ ++ + P + + L+D ++G V+ E D P++PAS+ KLMTA +
Sbjct: 1 MLAAIVSAFLHPAPSRAQTFQTAAAHAILIDADSGSVLFEKAADEPFSPASMAKLMTAEI 60
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDI 119
VF +KE + + + T++++A + + + S + L + L+ LIV+S ND
Sbjct: 61 VFRAIKEGRLSMDSEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 120
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ IAE++ TE F MN +K +GL+ + F NA G TARDMA ++ +
Sbjct: 121 AITIAENMAGTEDAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQHLID 180
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+P++ + + K N N + +GADG+KTG+ SG+ + SA+Q Q L
Sbjct: 181 TYPEFYKIYSEREFTWNRIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 240
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEE- 295
I V+ G R + ++ GF R+ + + VP ++ +
Sbjct: 241 IMVVSGLKTARDRAAEARKMMEWGFRAFEPRQVFAANETVAEVSVFGGEKGSVPVVANKP 300
Query: 296 --VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + ++ + ++ L+
Sbjct: 301 VRLLLPRGTSDRVTAKVVYQGPLVAPVAQGREVGRLR 337
>gi|134297080|ref|YP_001120815.1| penicillin-binding protein 6 [Burkholderia vietnamiensis G4]
gi|134140237|gb|ABO55980.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Burkholderia vietnamiensis G4]
Length = 437
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 86/337 (25%), Positives = 150/337 (44%), Gaps = 14/337 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D + V+A D PASLTKLMTAY+VF L +KK
Sbjct: 67 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 126
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 127 ISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 186
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN+ ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K
Sbjct: 187 GQFVTLMNDEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 246
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILG 245
+ + N N + DG+KTG T A+G+ ++ASA + G + L++V++G
Sbjct: 247 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMG 306
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTT 299
R S +L+ G+ + Y+ + + + V
Sbjct: 307 EPKEGDRTADSMKMLNYGYSAFDSVRLFKGGQAMSTPRIYKGKANTVQVGVKGDQWVTVP 366
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ T++ + + +++ +K K
Sbjct: 367 RGFGDKVKTEVDVNAPLIAPLAEGQQVGTVKIVADGK 403
>gi|309702334|emb|CBJ01656.1| penicillin-binding protein 6B [Escherichia coli ETEC H10407]
Length = 388
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|332874743|ref|ZP_08442613.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6014059]
gi|332737004|gb|EGJ67961.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6014059]
Length = 397
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 84/339 (24%), Positives = 149/339 (43%), Gaps = 12/339 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S LS Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 22 IAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSY 81
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + + ++++A S T T+ L+ +I++S ND +
Sbjct: 82 IIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDAS 141
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA+L+ I D
Sbjct: 142 KAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKD 201
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + S+ +G LI
Sbjct: 202 SSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLI 261
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISE 294
+VI G + R + +LL+ GF N + + F ++N +
Sbjct: 262 SVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEVQVGLAENF 321
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
V + + TQ+ + +K ++ +
Sbjct: 322 NVTMPKGKADGIKTQLVVQPNLS---APLQKGQVVGKLV 357
>gi|161613330|ref|YP_001587295.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161362694|gb|ABX66462.1| hypothetical protein SPAB_01041 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 388
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 154/351 (43%), Gaps = 22/351 (6%)
Query: 1 MRQFLVI--------IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L I ++ A+ ++ F + L+D TG V+ N
Sbjct: 1 MKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGLQNFATVQILHSGKKVGSERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEKITLL 329
+ ++ + + + K K+ E+ +++ +
Sbjct: 301 YGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQQVGEI 351
>gi|332857068|ref|ZP_08436374.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6013150]
gi|332870006|ref|ZP_08438982.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6013113]
gi|332726883|gb|EGJ58397.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6013150]
gi|332732506|gb|EGJ63757.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6013113]
Length = 397
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 84/339 (24%), Positives = 150/339 (44%), Gaps = 12/339 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S LS Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 22 IAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSY 81
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + + ++++A S T T+ L+ +I++S ND +
Sbjct: 82 IIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDAS 141
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA+L+ I D
Sbjct: 142 KAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKD 201
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + S+ +G LI
Sbjct: 202 SSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLI 261
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISE 294
+VI G + R + +LL+ GF N + + F ++N +
Sbjct: 262 SVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEVQVGLAENF 321
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
V + + TQ+ + + +K ++ +
Sbjct: 322 NVTMPKGKADGIKTQLVV---QPNLNAPLQKGQVVGKLV 357
>gi|332162265|ref|YP_004298842.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318606331|emb|CBY27829.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325666495|gb|ADZ43139.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 396
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 95/346 (27%), Positives = 152/346 (43%), Gaps = 14/346 (4%)
Query: 1 MRQFLV---IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+++ ++ +A+ A Y L+D N+G V+AE D +PASLT
Sbjct: 9 LKKLTFSAGLLLLALPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLT 68
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
K+M++YV+ +K K +T+ K+A K G + L + K +
Sbjct: 69 KIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGI 128
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+++S ND ++A+A+ + ++ FV MNN +K LGL+ T+FM HG+ G Y+TA DMA
Sbjct: 129 VIQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLNNTNFMTVHGLDAPGQYSTAHDMA 188
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVA 230
+L + D P + K + N N T L DGMKTGFT +G N+VA
Sbjct: 189 VLGQALIRDVPDEYALHKEKEFTFNKIRQINRNRLLWSTNLNVDGMKTGFTAGAGHNLVA 248
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLS 286
SA G LI+V+LGA R S LL+ GF I + +
Sbjct: 249 SATDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRFYETVVPIKATKPFVAQKVWFGDTG 308
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++E+ T + N + ++ K ++
Sbjct: 309 QAELGVAEDAAITIPKGQMKNLKASYKLNETELRAPLAKHQVVGTI 354
>gi|260549716|ref|ZP_05823933.1| penicillin-binding protein 6 [Acinetobacter sp. RUH2624]
gi|260407233|gb|EEX00709.1| penicillin-binding protein 6 [Acinetobacter sp. RUH2624]
Length = 382
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 86/339 (25%), Positives = 148/339 (43%), Gaps = 12/339 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S LS Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 7 IAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSY 66
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + + ++++A S T T+ L+ +I++S ND +
Sbjct: 67 IIEQKLLKGELTENEKVRMNESAWCKGSSAESCMYVPLNGTATVLEMLRGIIIQSGNDAS 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K +G++ T FMN+ G+ GHY+TA+DMA+L+ I D
Sbjct: 127 KAMAEHIAGNEGTFAHLMNQEAKRIGMTNTQFMNSTGLPAEGHYSTAKDMAVLAQHIIKD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + S+ +G LI
Sbjct: 187 SSRYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLI 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE-- 294
+VI G N R + +LLS GF N + + ++E
Sbjct: 247 SVIFGTDSVNERANQTRALLSWGFANFETANVQPANQVLAKAKVWFGKENEVQIGLAENF 306
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
V + + TQ+ + + +K ++ +
Sbjct: 307 NVTMPKGKAGGIKTQLVV---QPNLNAPLQKGQVVGKLV 342
>gi|311280276|ref|YP_003942507.1| Beta-lactamase [Enterobacter cloacae SCF1]
gi|308749471|gb|ADO49223.1| Beta-lactamase [Enterobacter cloacae SCF1]
Length = 402
Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats.
Identities = 97/337 (28%), Positives = 154/337 (45%), Gaps = 11/337 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+A A+ + + + L+D +G V++E D +PASLTK+MT+YVV
Sbjct: 20 FVAPAVQAAEQVQMPAPPPVDAKAWILMDYASGKVLSEGSADEKLDPASLTKIMTSYVVG 79
Query: 67 SFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDIA 120
LK K LT +TI ++A K G +++++ K +I++S ND +
Sbjct: 80 QALKAGKIKLTDSVTIGRDAWATGNPALRGSSVMFLKPGDQVSVEDLNKGVIIQSGNDAS 139
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+AIA+ + ++ FV MN+ ++ LGL+ T F HG+ G ++TARDMA+L+ + D
Sbjct: 140 IAIADYVAGSQDSFVGLMNSYAQKLGLTNTTFQTVHGLDAPGQFSTARDMALLTRAMIHD 199
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P + K + PN N L ADG+KTG T +G+N+V+SAIQGD L
Sbjct: 200 VPDEYAIHKEKEFTFNKIRQPNRNRLLWNASLNADGVKTGTTAGAGYNLVSSAIQGDMRL 259
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEE 295
IAV+LG R S LL+ GF I + + + + S E
Sbjct: 260 IAVVLGTKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVEQRVWYGDASQAKLGAGEA 319
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T N + ++ K ++
Sbjct: 320 GSITLPRGQLKNLKASYTLNETQLTAPLAKGQVVGTI 356
>gi|253688070|ref|YP_003017260.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251754648|gb|ACT12724.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 401
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 89/330 (26%), Positives = 148/330 (44%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + L+D ++G V+AE+ D +PASLTK+M +YV+ +K K
Sbjct: 26 FTYAEQMPAVPQIDAKAFILMDYHSGKVLAESNADERLDPASLTKIMASYVIGQAIKSGK 85
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
T +T+ K+A K G + + K ++++S ND ++A+A+ +
Sbjct: 86 ISPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSGNDASIALADYV 145
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN K L L+ THF+ HG+ G Y+TARDMA+L + D P+
Sbjct: 146 AGSQDAFVSLMNNYVKALNLTNTHFLTVHGLDATGQYSTARDMALLGQALIRDVPEEYAL 205
Query: 188 FQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ K + PN N T L DG+KTG T +G N+VASA +G+ LI+V+LGA
Sbjct: 206 HKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEGNMRLISVVLGA 265
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKE 302
R + S LL+ GF I + + + ++++ T +
Sbjct: 266 QTDAIRFRESEKLLTWGFRFFETVTPIKADAPFTTQRVWFGTEKDARLGVAQDAALTIPK 325
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
N + ++ K ++
Sbjct: 326 GQMKNLKASFTLNQPQLSAPLTKNQVVGTI 355
>gi|229526111|ref|ZP_04415515.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
VL426]
gi|229336269|gb|EEO01287.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
VL426]
Length = 389
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 95/344 (27%), Positives = 153/344 (44%), Gaps = 17/344 (4%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + + Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + G+ + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHAGDQVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
L I D P+ + G N N + DGMKTG+T +G+++ +S
Sbjct: 185 LGRAIIRDLPEIYPLYSELSFTYNGITQHNRNGLLRDRSMNVDGMKTGYTSGAGYSLASS 244
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNE 288
A G+ LI+V++G+ +R S LLS GF I NE
Sbjct: 245 ATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQKDSVIQNQRLWYGDKNE 304
Query: 289 VPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V S + + + ++ N ++ K+ E+ + + +
Sbjct: 305 VALGSADTVYLTLPRSDVKKLNAVIQLDKNLEAPIAKGDVVGSI 348
>gi|145298088|ref|YP_001140929.1| Serine-type D-Ala-D-Ala carboxypeptidase [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142850860|gb|ABO89181.1| Serine-type D-Ala-D-Ala carboxypeptidase [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 396
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 99/354 (27%), Positives = 150/354 (42%), Gaps = 25/354 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENY 46
M +F + +A L + A + L+D +G V+AE
Sbjct: 1 MSKFARSVILASLISATAQANTPVPTPNAAPMVVPAAPEISAKAHILIDYYSGQVLAEAN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMT 103
D PASLTK+MT+Y++ L E T +TISKNA S + G ++
Sbjct: 61 ADERLPPASLTKMMTSYIIGHELLEGNIKNTDMVTISKNAWSKNYTDSSKMFIEVGKQVS 120
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+D+ K +I++S ND VA+AE L + F MN S LG+ T F N HG+ + GH
Sbjct: 121 VDDLNKGIIIQSGNDACVAMAEFLAGSTDSFASLMNAWSAKLGMKDTQFKNPHGLDEEGH 180
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTC 222
Y+TARDMA L + D P+ + K G N N L DG+KTG
Sbjct: 181 YSTARDMARLGQALIHDQPEEYKIYAQKSFVFNGITQHNRNRLLWDQSLQVDGIKTGHVS 240
Query: 223 ASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
G+N+V+SA LIAV+LGA +R S LL+ GF +
Sbjct: 241 QVGYNLVSSATNNEGMRLIAVVLGASSEGSRAAESKKLLTYGFRFFQSLTPYKAGTELVT 300
Query: 282 QQNLSNEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
Q+ + P + V T+ + N + + ++ +++ +
Sbjct: 301 QKIWMGDKPEVKLGVDKDVSVLVTRGQGNNLKADFQLESELKAPLAKGQRVGTV 354
>gi|188582286|ref|YP_001925731.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
BJ001]
gi|179345784|gb|ACB81196.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
BJ001]
Length = 418
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 83/336 (24%), Positives = 145/336 (43%), Gaps = 8/336 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ + + P + + L+D +G V+ E D P++PAS+ KLMTA +
Sbjct: 16 MLAAVLNAVLPPAPARAQTFQTAAAHAILVDAESGSVLFEKAADEPFSPASMAKLMTAEI 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDI 119
VF +KE + + T T++++A + + + S + L + L+ LIV+S ND
Sbjct: 76 VFRAIKEGRLSMDTEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 135
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ IAE++ TE+ F MN +K +GL+ + F NA G TARDMA ++ +
Sbjct: 136 AITIAENMAGTEEAFAGMMNQRAKEIGLTRSTFRNATGYSAPDQKVTARDMARIAQHLID 195
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+P++ + + K N N + +GADG+KTG+ SG+ + SA+Q Q L
Sbjct: 196 SYPEFYKIYSEREFTWNKIKQQNRNPLLTLDIGADGLKTGYLEESGYALTGSAVQNGQRL 255
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEEV 296
I V+ G R S ++ GF R+ VP ++ +
Sbjct: 256 IMVVSGLKTARDRAAESRKMMEWGFRAFEPRQVFAANEPVADVSVFGGEKGSVPVVANKP 315
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + E+ +
Sbjct: 316 VRLLLPRGTSDRVTAKVVYQGPLVAPVEQGREVGRL 351
>gi|126698888|ref|YP_001087785.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Clostridium difficile 630]
gi|254974836|ref|ZP_05271308.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Clostridium difficile QCD-66c26]
gi|255092224|ref|ZP_05321702.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Clostridium difficile CIP 107932]
gi|255306248|ref|ZP_05350420.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Clostridium difficile ATCC 43255]
gi|255313963|ref|ZP_05355546.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Clostridium difficile QCD-76w55]
gi|255516643|ref|ZP_05384319.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Clostridium difficile QCD-97b34]
gi|255649742|ref|ZP_05396644.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Clostridium difficile QCD-37x79]
gi|260682898|ref|YP_003214183.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
gi|260686496|ref|YP_003217629.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
gi|306519851|ref|ZP_07406198.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-32g58]
gi|115250325|emb|CAJ68147.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile]
gi|260209061|emb|CBA62190.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Clostridium difficile CD196]
gi|260212512|emb|CBE03449.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Clostridium difficile R20291]
Length = 387
Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats.
Identities = 95/350 (27%), Positives = 157/350 (44%), Gaps = 18/350 (5%)
Query: 1 MRQFL-----VIIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
M++ ++IA+ LS F + L+D +G ++ E
Sbjct: 1 MKKLASTALAILIALTPLSFSFANNKENADANQLNISSKSAILMDVGSGQILYEKDAHKK 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PAS+TK+MT ++ L K L + +S+ AS S + G T +D LK
Sbjct: 61 LPPASVTKVMTMLLIVEALDSGKIKLDDEVQVSETASSMGGSQIFLEPGETQKVDTLLKG 120
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ V SAND VA+AE L + + FV MN +K L ++ THF N +G+ HYT+A D+
Sbjct: 121 IAVASANDACVAMAEHLAGSVEGFVDRMNAKAKELNMNDTHFANTNGLPVANHYTSAHDI 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFTCASG 225
A++S + + + GKK NTN + + GA G+KTGFT +
Sbjct: 181 ALMSRELLKHEMISKYLTTWMDKVVVGKKQVTVGLANTNKLIKHYQGATGVKTGFTQEAK 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ--- 282
+ + ASA +G+ L+A LGA R ++SLL+ GF N K +
Sbjct: 241 YCLSASAKRGNTHLVAATLGAETSPERFNDASSLLNYGFANYESVKLCSKGDNIATLTLD 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N+V +++E + + K+ + ++ + +K T+L
Sbjct: 301 KADENKVKLVAKEDLNALIKKGSSKEFEKKIEIVKNPKMPIKKGTVLGKI 350
>gi|221211096|ref|ZP_03584075.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD1]
gi|221168457|gb|EEE00925.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD1]
Length = 438
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 85/338 (25%), Positives = 150/338 (44%), Gaps = 15/338 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D + V+A D PASLTKLMTAY+VF L +KK
Sbjct: 67 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 126
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 127 ISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 186
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN+ ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K
Sbjct: 187 AQFVTMMNDEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 246
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244
+ + N N + DG+KTG T A+GF +++SA + + L+AV++
Sbjct: 247 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLISSAKRPIPGASDAQRRLVAVMM 306
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCT 298
G + R + S +L+ G+ + Y+ + ++ + V
Sbjct: 307 GEPKESDRTQDSMKMLNYGYSAFDAVRLFKGGQAISTPRLYKGKENTVQVGVASDQWVTV 366
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ + +++ +K K
Sbjct: 367 PRGLGDKVKPEVDVNAPLIAPLAQGQQVGTVKVVADGK 404
>gi|123441794|ref|YP_001005778.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122088755|emb|CAL11560.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 405
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 97/346 (28%), Positives = 153/346 (44%), Gaps = 14/346 (4%)
Query: 1 MRQFLV---IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+++ ++ +A+ A Y L+D N+G V+AE D +PASLT
Sbjct: 18 LKKLTFSAGLLLLALPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLT 77
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
K+M++YV+ +K K +T+ K+A S K G + L + K +
Sbjct: 78 KIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNSALRGSSLMFLKPGDQVKLSDLNKGI 137
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+++S ND ++A+A+ + ++ FV MNN +K LGL+ THFM HG+ G Y+TA DMA
Sbjct: 138 VIQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLNNTHFMTVHGLDAPGQYSTAHDMA 197
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVA 230
+L + D P + K + N N T L DGMKTGFT +G N+VA
Sbjct: 198 VLGQALIRDVPDEYALHKEKEFTFNKIRQINRNRLLWSTNLNVDGMKTGFTAGAGHNLVA 257
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLS 286
SA G LI+V+LGA R S LL+ GF I + +
Sbjct: 258 SATDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRFYETVVPIKATKPFVTQKVWFGDTG 317
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++E+ T + N + ++ K ++
Sbjct: 318 QAELGVAEDAAITIPKGQMKNLKASYKLNETELRAPLAKHQVVGTI 363
>gi|59711352|ref|YP_204128.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Vibrio fischeri ES114]
gi|197335666|ref|YP_002155507.1| D-alanyl-D-alanine carboxypeptidase DacC [Vibrio fischeri MJ11]
gi|59479453|gb|AAW85240.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Vibrio fischeri ES114]
gi|197317156|gb|ACH66603.1| D-alanyl-D-alanine carboxypeptidase DacC [Vibrio fischeri MJ11]
Length = 391
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 91/346 (26%), Positives = 151/346 (43%), Gaps = 12/346 (3%)
Query: 1 MRQFLV---IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+++ ++ I+ + + A Y L+D ++G V+AE + NPASLT
Sbjct: 8 LKRLILSSFILGSTVAVAAPAVIPNAPQIAAKGYVLMDYHSGKVLAEKDMNVRMNPASLT 67
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVK 114
K+MT+YV+ ++ + + ISKNA S + GST+ + K +I++
Sbjct: 68 KMMTSYVIGQEIESGNISMDDDVVISKNAWAKNFPGSSKMFIEVGSTVKVRELNKGIIIQ 127
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND VA+AE + +E FV MN +K L L THF N HG+ + Y+T DMA++
Sbjct: 128 SGNDACVAMAEHVAGSEDAFVDLMNAWAKTLNLKNTHFANVHGLDRDDLYSTPYDMALIG 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ D P+ + K G N N + DG+KTG T +GFN+V+SA
Sbjct: 188 QALIRDVPEEYRVYSEKSFTYNGITQYNRNGLLWDKSMNVDGIKTGHTNGAGFNLVSSAT 247
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEV 289
+G L+AV++G N R S LL+ GF + + + +
Sbjct: 248 EGKMRLVAVVMGTKSGNARKAESKKLLNYGFRFFETVSPHKANETFVTEKVWMGSTDEVA 307
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++E+ T +K + K ++ +
Sbjct: 308 LGVAEDTYVTLPRGQAKKMTASFVLEK-TLEAPIYKGDVVGKLYYQ 352
>gi|330445206|ref|ZP_08308858.1| D-alanyl-D-alanine carboxypeptidase family protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328489397|dbj|GAA03355.1| D-alanyl-D-alanine carboxypeptidase family protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 391
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 89/341 (26%), Positives = 156/341 (45%), Gaps = 10/341 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++A A ++ + A Y L+D N+G ++A + PASLTK+MT+YV+
Sbjct: 16 TLLASATVAASPAVVPEAPQIAAKGYILVDYNSGKILAGHNEYEKLAPASLTKMMTSYVI 75
Query: 66 FSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+K + +SKNA S + G T+ + + + +IV S ND VA
Sbjct: 76 GQEIKNGNISPDDTVVVSKNAWAKNFPGSSKMFLEVGKTVKVSDLNRGIIVDSGNDACVA 135
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +++ FV MN +KNLG+ +THF N HG+ + YTT D++IL+ + +D P
Sbjct: 136 MAEHIAGSQESFVDLMNGWAKNLGMKSTHFANVHGLDRSDLYTTPYDLSILARHLISDLP 195
Query: 183 QYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ K G N N + DG+KTG T +G+++V++A +G+ L+A
Sbjct: 196 NEFKIYSEKSFTYNGITQYNRNGLLWDKSMHVDGLKTGHTDNAGYSLVSTATEGNMRLVA 255
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE-- 295
V++G +N R S LL+ GF + + + ++E
Sbjct: 256 VVMGTASKNARLAESKKLLNFGFRFYETLSPNKKDQTIETEKVWMGDTDTVNLGVAENTY 315
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
V + + + K+ ++ E++ L + K
Sbjct: 316 VTLPRSQAKDLKASFVLTKELKAPITKGEEVGTLTYSLGDK 356
>gi|168790220|ref|ZP_02815227.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC869]
gi|195939526|ref|ZP_03084908.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
EC4024]
gi|254793720|ref|YP_003078557.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
TW14359]
gi|261226456|ref|ZP_05940737.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
FRIK2000]
gi|189370276|gb|EDU88692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC869]
gi|226237417|dbj|BAH46939.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli O55:H7]
gi|254593120|gb|ACT72481.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli O157:H7 str. TW14359]
gi|320188186|gb|EFW62850.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
EC1212]
gi|320641418|gb|EFX10862.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
G5101]
gi|320646787|gb|EFX15664.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H- str.
493-89]
gi|320652066|gb|EFX20409.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H- str.
H 2687]
gi|320657428|gb|EFX25226.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320663244|gb|EFX30549.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O55:H7 str.
USDA 5905]
Length = 388
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|260777069|ref|ZP_05885963.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260606735|gb|EEX33009.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 394
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/334 (27%), Positives = 150/334 (44%), Gaps = 10/334 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ + + S A Y ++D ++G V+A PD P PASLTKLMTAYVV
Sbjct: 10 LLCTLVVASAEAVITPDAPQINAKGYVVMDYHSGQVVASQNPDTPLAPASLTKLMTAYVV 69
Query: 66 FSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ + TIS+NA PS K G +++ N + +IV+S ND +VA
Sbjct: 70 GQEINAGRLSWDDKATISRNAWSVNFPEPSKMFIKPGDEISIRNLMLGVIVQSGNDASVA 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +E FV MN ++ LG+ T F+NAHG+ TT +DMA L I D P
Sbjct: 130 LAEHVAGSESAFVSLMNGWTQTLGMENTQFINAHGLDGDNIQTTPKDMANLMRAIIKDVP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ +Q K + N N L DG KTG+T +G+++V+SA +G LI+
Sbjct: 190 EVYKLYQEKKFTWNDIEQYNRNKLLWDRSLNVDGGKTGYTENAGYSLVSSATEGRMRLIS 249
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVC 297
V++G + R S +LL GF + ++ N ++E V
Sbjct: 250 VVMGTPSQQARTSASRNLLGYGFRFFDTVQVAKKDEVIMQSRVWKGAEENVPVTVAETVY 309
Query: 298 T--TQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + ++ ++ + + +
Sbjct: 310 LTFPRAMKDSLKQEVVVESQLQAPIAAGDSLGQV 343
>gi|74316665|ref|YP_314405.1| serine-type D-ala-D-ala-carboxypeptidase [Thiobacillus
denitrificans ATCC 25259]
gi|74056160|gb|AAZ96600.1| serine-type D-ala-D-ala-carboxypeptidase [Thiobacillus
denitrificans ATCC 25259]
Length = 402
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 82/310 (26%), Positives = 138/310 (44%), Gaps = 4/310 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L+D +G V+ ++ PASLTKLMT++V L+ + +TIS+
Sbjct: 48 ELAAKSWVLMDAASGSVLVDHRGRERLPPASLTKLMTSHVAALELQRGRIKENDLVTISE 107
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S + G+ + + + L+ +IV+S ND ++A+AE L E F MN +K
Sbjct: 108 KAWRMGGSKMFVRVGNQVAVHDLLRGIIVQSGNDASIALAEHLAGGEDTFAALMNQEAKR 167
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
LGL+ THF+NA G GHY++A DMA L+ I + P + + K G K PN N
Sbjct: 168 LGLADTHFVNATGWPAEGHYSSALDMAKLARAIIIEDPAHYGLYAEKEFVWNGIKQPNRN 227
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
+ DG+KTG T +G+ +VAS+ + Q +IA + G R +A LL+ GF
Sbjct: 228 LLLWRDPSVDGLKTGHTEEAGYCLVASSQRDGQRMIAAVFGTESEAARATETAKLLAYGF 287
Query: 265 YNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ + ++ ++ + + + + + +
Sbjct: 288 NFFDSKTFFKKGQAVQTVEVWKGAARTLKAGVAADFAAVLPKRTSGEFKTRTVVTSDPLV 347
Query: 321 IDFEKITLLK 330
+ L
Sbjct: 348 APVKAGAPLG 357
>gi|325122968|gb|ADY82491.1| D-ala-D-ala-carboxypeptidase [Acinetobacter calcoaceticus PHEA-2]
Length = 382
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 81/337 (24%), Positives = 144/337 (42%), Gaps = 8/337 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S LS Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 7 IAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSY 66
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + + ++++A S T T+ L+ +I++S ND +
Sbjct: 67 IIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDAS 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K +G+ T F+N+ G+ GHY+TA+DMA+L+ I D
Sbjct: 127 KAMAEHIAGNEGTFAHMMNQEAKRIGMVNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + S+ +G LI
Sbjct: 187 SSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLI 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEV 296
+VI G + R + +LL+ GF N + ++E
Sbjct: 247 SVIFGTPSMSERADQTRTLLAWGFANFETANVQPANQVLAKAKVWFGKEDEVQVGLAENF 306
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
T + + + + + +K ++ +
Sbjct: 307 SVTMPKG-KADGIKTQLVVQPNLNAPLQKGQVVGKLV 342
>gi|218558891|ref|YP_002391804.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli S88]
gi|218365660|emb|CAR03397.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli S88]
Length = 388
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 155/351 (44%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|52425884|ref|YP_089021.1| DacC protein [Mannheimia succiniciproducens MBEL55E]
gi|52307936|gb|AAU38436.1| DacC protein [Mannheimia succiniciproducens MBEL55E]
Length = 394
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 95/351 (27%), Positives = 150/351 (42%), Gaps = 16/351 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
+++ + I +L+ + Y ++D N+G V+A PD P
Sbjct: 6 LKKTSLAIFAGLLALPLTVSAEDVNFGIVPPQVNAQTYVVMDYNSGAVLASLNPDQRQYP 65
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITI---SKNASEYPPSNSTFKKGSTMTLDNALKL 110
ASLTK+MT+YV+ LK+ K T IT+ S + S +T++ +
Sbjct: 66 ASLTKMMTSYVIGDALKQGKIHNTDTITVGESSWGKNFPDSSKMFLNLNQQVTVEQLNRG 125
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+I+ S ND VA+AE + T F+ MN ++ GL THF HG+ Y++ARDM
Sbjct: 126 IIIVSGNDACVAMAEHVSGTTDNFINSMNKYAEQFGLKNTHFTTVHGLDDANQYSSARDM 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIV 229
AI+ I D P+ + K K PN N + DGMKTG T +G+N+V
Sbjct: 186 AIIGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLV 245
Query: 230 ASAIQ-GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQN 284
ASA + LI V++G R S LL F + K + +D Y N
Sbjct: 246 ASATNADNMRLITVVMGVPTYKGREVESKKLLQWAFNSFDTFKTLEAGKAVTNQDIYYGN 305
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ ++ T + N + + + DK+ K ++ I +
Sbjct: 306 QGKVQIGVLQDRFITVPKGRNADLKARFELDKKYLEAPLAKGQVVGKVIYQ 356
>gi|322832952|ref|YP_004212979.1| Beta-lactamase [Rahnella sp. Y9602]
gi|321168153|gb|ADW73852.1| Beta-lactamase [Rahnella sp. Y9602]
Length = 389
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 94/352 (26%), Positives = 158/352 (44%), Gaps = 20/352 (5%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSI--------AETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + +++ ++ + +I + + L+D +G V+A PD
Sbjct: 1 MKRSVMSVLSCVLMFSAGSAKAIAPLDFPVVPPSIDAASFVLMDYASGDVLAAGNPDERR 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
NPASLTKLMT YV+ L KK + +T+ + A + K G +T+
Sbjct: 61 NPASLTKLMTGYVIDRALDHKKITMDDVVTVPQEAWVAGNKSLAGSSLMFLKPGDHVTVR 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++ +I+ S ND VA+A+ + ++ FV MN ++GL+ THF HG+ G YT
Sbjct: 121 DLIRGIIITSGNDACVAMADYVAGSQDSFVGMMNQYVVSMGLTNTHFETVHGLDAPGQYT 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
T+ D+A LS I P+ H + K L N N L DG+KTG T ++
Sbjct: 181 TSYDLAKLSRAIIGGEPEEYHMYAEKSLTYDNITQQNRNGLLWDKNLQVDGLKTGHTESA 240
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
GFNI+ASA QGD+ LIAV++G R + + LL+ GF T ++ N +
Sbjct: 241 GFNIIASATQGDRRLIAVVMGGKSSKGREEQARKLLTWGFREYTSKQIFNADQTVSSEHV 300
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + +V + + + + + +K L +
Sbjct: 301 WFGANAQVKVGSLSDVFISVPQADADKLKAQYVLTRPQIDAPLKKGQELGSI 352
>gi|226331025|ref|ZP_03806543.1| hypothetical protein PROPEN_04955 [Proteus penneri ATCC 35198]
gi|225201820|gb|EEG84174.1| hypothetical protein PROPEN_04955 [Proteus penneri ATCC 35198]
Length = 367
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 85/324 (26%), Positives = 141/324 (43%), Gaps = 11/324 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + + Y L+D N+G V+AE D +PASLTK+MT+YV+ ++ K +
Sbjct: 2 IPAVPSIEAESYILIDYNSGKVLAEMNADVRRDPASLTKMMTSYVIGQSIRAGKISNSDI 61
Query: 80 ITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ I + A K G +T+ + + ++S ND VA+A + ++
Sbjct: 62 VPIGEEAWATGNPIFRGSSLMFLKPGDQVTVAQLTRGINLQSGNDACVAMASYVAGSQDT 121
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
FV MN+ K LGL T F HG+ G Y+TARDMA++ + D P ++ K
Sbjct: 122 FVAMMNDYVKRLGLQNTQFQTVHGLDAPGQYSTARDMALIGAALIRDVPDEYAIYKEKEY 181
Query: 194 EIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ N N T L DG+KTG T ++G+N+VASA +G+ LI+ ++G R
Sbjct: 182 TYNNIRQTNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGGHSPKGR 241
Query: 253 NKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ S LL+ GF K + + + + ++V T +
Sbjct: 242 DVESKKLLTWGFRFFETVKPLQVGKEFAAEPIWYGETDKVQLGVDKDVYLTIPRGRLKDL 301
Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332
+ D K ++
Sbjct: 302 KASYVLDNVELHAPVTKNQVVGTI 325
>gi|161523591|ref|YP_001578603.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia multivorans
ATCC 17616]
gi|221199887|ref|ZP_03572930.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans
CGD2M]
gi|221207444|ref|ZP_03580453.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2]
gi|160341020|gb|ABX14106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia multivorans
ATCC 17616]
gi|221172647|gb|EEE05085.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans CGD2]
gi|221180126|gb|EEE12530.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans
CGD2M]
Length = 438
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 85/338 (25%), Positives = 150/338 (44%), Gaps = 15/338 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D + V+A D PASLTKLMTAY+VF L +KK
Sbjct: 67 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 126
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 127 ISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 186
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN+ ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K
Sbjct: 187 AQFVTMMNDEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 246
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244
+ + N N + DG+KTG T A+GF +++SA + + L+AV++
Sbjct: 247 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLISSAKRPIPGASDAQRRLVAVMM 306
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCT 298
G + R + S +L+ G+ + Y+ + ++ + V
Sbjct: 307 GEPKESDRTQDSMKMLNYGYSAFDAVRLFKGGQAISTPRLYKGKENTVQVGVASDQWVTV 366
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ + +++ +K K
Sbjct: 367 PRGLGDKVKPEVDVNAPLIAPLAQGQQVGTVKVVADGK 404
>gi|114775714|ref|ZP_01451282.1| hypothetical protein SPV1_05278 [Mariprofundus ferrooxydans PV-1]
gi|114553825|gb|EAU56206.1| hypothetical protein SPV1_05278 [Mariprofundus ferrooxydans PV-1]
Length = 334
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 81/294 (27%), Positives = 140/294 (47%), Gaps = 3/294 (1%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L+ + + ++D +G +IA + D PASLTK+MT Y+ F LK+
Sbjct: 25 LAVHAAAWPESPRLDAKAWAMIDARSGQIIASHNADEQLPPASLTKMMTLYLAFEALKQG 84
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ L TP+++S+ A + S T+ + + S ND +A+AE + +E
Sbjct: 85 RLSLDTPVSVSQKAWKIGGSTMFLDPRMHPTVGQLIHGIATYSGNDACIALAEHMEGSES 144
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F + MN ++ LG+ +HF+NA G GHY++A DMAIL + DFP+ F +
Sbjct: 145 TFAERMNAKARELGMLHSHFVNATGFPTEGHYSSAGDMAILGAALWRDFPERYKLFDERD 204
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
G+ PN N + T ADG+KTG T +G+ +V SA + + +A + G R
Sbjct: 205 FTYDGRTQPNRNRLLWTMSEADGIKTGHTQEAGYCLVGSAEKANTRFVAAVFGTKSDRAR 264
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEI 303
+ + +LL GF + ++ I+ + ++ + + +V T +
Sbjct: 265 AQETRTLLRFGFNHFVTKRPAEREIRRQVEVFEGTEDHVWLRPASDVWVTVPKG 318
>gi|172061846|ref|YP_001809498.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
MC40-6]
gi|171994363|gb|ACB65282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
MC40-6]
Length = 437
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 85/336 (25%), Positives = 148/336 (44%), Gaps = 14/336 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ P + L+D + V+A D PASLTKLMTAY+VF
Sbjct: 62 FTGAPATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEA 121
Query: 69 LKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L +KK + IT S+ S + +++ + + +I++S ND A+A+AE
Sbjct: 122 LDKKKISMEQIITPSEAVRRVGLDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAEL 181
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E +FV MN ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY
Sbjct: 182 VGGSEGQFVTLMNAEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYG 241
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLI 240
F K + + N N + DG+KTG T A+G+ ++ASA + G + L+
Sbjct: 242 IFSEKEFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLV 301
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE- 295
+V++G R + S +L+ G+ + Y+ + + +
Sbjct: 302 SVMMGEPKEGERTQDSMKMLNYGYSAFDAVRLFKGGQAMSTPRVYKGKENTVQVGVKSDQ 361
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
V + ++ + + +++ +K
Sbjct: 362 WVTVPRGLGDKVKPEVDVNAPLIAPLAEGQQVGTVK 397
>gi|328469382|gb|EGF40328.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329]
Length = 385
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 88/347 (25%), Positives = 154/347 (44%), Gaps = 13/347 (3%)
Query: 1 MR----QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M+ ++ ++ + + + Y L+D +G +IAE+ PASL
Sbjct: 1 MKVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+
Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L
Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASA 232
I +D P + K + N N + DG KTG+T +G+++V+SA
Sbjct: 181 MQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNE 288
+G LI+V++G + R S +LLS GF ++ + ++ N +
Sbjct: 241 KEGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYDTKQVAKQGQVESKVRVWKGNTNQV 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ T + + E + + + K
Sbjct: 301 EAIFAKDAYLTLPRSMTAGLDKSVVLN-EPLIAPIAQGDEIGKVVWK 346
>gi|149909670|ref|ZP_01898322.1| D-alanyl-D-alanine serine-type carboxypeptidase [Moritella sp.
PE36]
gi|149807184|gb|EDM67139.1| D-alanyl-D-alanine serine-type carboxypeptidase [Moritella sp.
PE36]
Length = 388
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 99/341 (29%), Positives = 154/341 (45%), Gaps = 13/341 (3%)
Query: 2 RQFLV---IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ ++ +A LS + + L+D ++G VIAE D PASLTK
Sbjct: 6 KKLILTSLAMASFSLSAAPSVIPDTPVVAAKAFILIDFDSGKVIAEKNADDSLKPASLTK 65
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ ++ L +TISKNA S + G T+T++ + +IV+S
Sbjct: 66 MMTSYVIGQEIRSGNINLDDQVTISKNAWAKNFPDSSKMFIEVGKTITVEKLNQGIIVQS 125
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE F Q MN+ SK LG+ ATHF N+HG+ YTTARDMA L
Sbjct: 126 GNDACVAMAEYIAGTEGAFAQLMNSWSKQLGMDATHFANSHGLDSKDQYTTARDMATLGQ 185
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ D P+ + K G N N + DG+KTG T +G+N+V+SA +
Sbjct: 186 ALIRDVPEEYRIYSQKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATK 245
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
+ L+AV+LG + R S LL+ GF ++ E I
Sbjct: 246 DNMRLVAVVLGTKSADARKAESKKLLNFGFRFYETVTLHEANSSIVAERVWMGEQEQIEL 305
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + N + K+ + + + +
Sbjct: 306 GLANKLTLTVPRGQAKNLTADFEIQKELSAPIAKGDIVGKV 346
>gi|169795187|ref|YP_001712980.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
(precursor) [Acinetobacter baumannii AYE]
gi|213158149|ref|YP_002320200.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
[Acinetobacter baumannii AB0057]
gi|215482735|ref|YP_002324933.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii
AB307-0294]
gi|239501150|ref|ZP_04660460.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii
AB900]
gi|260556667|ref|ZP_05828885.1| penicillin-binding protein 6 [Acinetobacter baumannii ATCC 19606]
gi|301346852|ref|ZP_07227593.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
[Acinetobacter baumannii AB056]
gi|301511131|ref|ZP_07236368.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
[Acinetobacter baumannii AB058]
gi|301596416|ref|ZP_07241424.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
[Acinetobacter baumannii AB059]
gi|169148114|emb|CAM85977.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
(precursor) [Acinetobacter baumannii AYE]
gi|193077945|gb|ABO12853.2| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
(precursor) [Acinetobacter baumannii ATCC 17978]
gi|213057309|gb|ACJ42211.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
[Acinetobacter baumannii AB0057]
gi|213987778|gb|ACJ58077.1| Penicillin-binding protein 6 precursor [Acinetobacter baumannii
AB307-0294]
gi|260409926|gb|EEX03226.1| penicillin-binding protein 6 [Acinetobacter baumannii ATCC 19606]
Length = 382
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 84/339 (24%), Positives = 150/339 (44%), Gaps = 12/339 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S LS Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 7 IAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSY 66
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + + ++++A S T T+ L+ +I++S ND +
Sbjct: 67 IIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDAS 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA+L+ I D
Sbjct: 127 KAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + S+ +G LI
Sbjct: 187 SSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLI 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISE 294
+VI G + R + +LL+ GF N + + F ++N +
Sbjct: 247 SVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEVQVGLAENF 306
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
V + + TQ+ + + +K ++ +
Sbjct: 307 NVTMPKGKADGIKTQLVV---QPNLNAPLQKGQVVGKLV 342
>gi|153839337|ref|ZP_01992004.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus
AQ3810]
gi|149747147|gb|EDM58135.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus
AQ3810]
Length = 385
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 88/347 (25%), Positives = 154/347 (44%), Gaps = 13/347 (3%)
Query: 1 MR----QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M+ ++ ++ + + + Y L+D +G +IAE+ PASL
Sbjct: 1 MKVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+
Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L
Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASA 232
I +D P + K + N N + DG KTG+T +G+++V+SA
Sbjct: 181 MQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNE 288
+G LI+V++G + R S +LLS GF ++ + ++ N +
Sbjct: 241 KEGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYDTKQVAKQGQVESKVRVWKGNTNQV 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ T + + E + + + K
Sbjct: 301 EAIFAKDAYLTLPRSMTAGLDKSVVLN-EPLIAPIAQGDEIGKVVWK 346
>gi|260855992|ref|YP_003229883.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str.
11368]
gi|257754641|dbj|BAI26143.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str.
11368]
Length = 388
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 94/351 (26%), Positives = 155/351 (44%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I D P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHDEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|323977820|gb|EGB72906.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509]
Length = 388
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 153/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREDEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|317405763|gb|EFV86054.1| penicillin-binding protein [Achromobacter xylosoxidans C54]
Length = 385
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 96/349 (27%), Positives = 154/349 (44%), Gaps = 13/349 (3%)
Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ +++A A +S + LLD +G VIA + PASLTK
Sbjct: 3 MKKLAASLLVATACMSGALAQSMPQPDLSAKAWLLLDETSGQVIASHAATARIEPASLTK 62
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSA 116
+MTAYVVF + K+ + IS A + PP S + GS +++D L+ L+++S
Sbjct: 63 IMTAYVVFGAIHNKELSPDQKVVISTRAWKVPPGSSKMFLEPGSRVSVDQLLRGLMIQSG 122
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A+A+AE++ + + FV MN+T+ LGL THF + HG+ G Y+T D++IL+ R
Sbjct: 123 NDAAIALAEAVSGSVEAFVARMNDTAVQLGLHGTHFASPHGLPDPGTYSTVSDLSILATR 182
Query: 177 IKTDFPQYMH-YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
D+PQ Y K PN N + DG+KTG T A+G+ IVA+A +
Sbjct: 183 FIRDYPQLYKTYDSAKTYTYNNITQPNRNRLLWLDPSVDGLKTGHTDAAGYCIVATAHRP 242
Query: 236 D----QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSN 287
+ + LI V++G R + S LL GF K + ++
Sbjct: 243 NGKEQRRLITVVVGTASDKLRTQESRELLEWGFQGFNTIKLYAKGQAVATPEVWKGQADT 302
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + T + + ++ + K
Sbjct: 303 LKAGFARDAYVTVPAGAKVEPVWTPQDPLVAPIPAQATVGSVRVMVDGK 351
>gi|184158962|ref|YP_001847301.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
gi|183210556|gb|ACC57954.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
gi|322508944|gb|ADX04398.1| dacC [Acinetobacter baumannii 1656-2]
gi|323518930|gb|ADX93311.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii
TCDC-AB0715]
Length = 382
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 84/339 (24%), Positives = 149/339 (43%), Gaps = 12/339 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S LS Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 7 IAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSY 66
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + + ++++A S T T+ L+ +I++S ND +
Sbjct: 67 IIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDAS 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA+L+ I D
Sbjct: 127 KAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + S+ +G LI
Sbjct: 187 SSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLI 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISE 294
+VI G + R + +LL+ GF N + + F ++N +
Sbjct: 247 SVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEVQVGLAENF 306
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
V + + TQ+ + +K ++ +
Sbjct: 307 NVTMPKGKADGIKTQLVVQPNLS---APLQKGQVVGKLV 342
>gi|170019661|ref|YP_001724615.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ATCC 8739]
gi|169754589|gb|ACA77288.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC
8739]
Length = 388
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 155/351 (44%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDNTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|110642224|ref|YP_669954.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 536]
gi|191170002|ref|ZP_03031556.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
gi|227887061|ref|ZP_04004866.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 83972]
gi|110343816|gb|ABG70053.1| penicillin-binding protein 6B precursor [Escherichia coli 536]
gi|190909518|gb|EDV69103.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
gi|227835411|gb|EEJ45877.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 83972]
gi|307554080|gb|ADN46855.1| DD-carboxypeptidase [Escherichia coli ABU 83972]
gi|323956179|gb|EGB51930.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263]
Length = 388
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|256017815|ref|ZP_05431680.1| D-alanyl-D-alanine carboxypeptidase [Shigella sp. D9]
Length = 388
Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|260899720|ref|ZP_05908115.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus AQ4037]
gi|308106862|gb|EFO44402.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus AQ4037]
Length = 385
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 88/347 (25%), Positives = 154/347 (44%), Gaps = 13/347 (3%)
Query: 1 MR----QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M+ ++ ++ + + + Y L+D +G +IAE+ PASL
Sbjct: 1 MKVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+
Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L
Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASA 232
I +D P + K + N N + DG KTG+T +G+++V+SA
Sbjct: 181 MQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNE 288
+G LI+V++G + R S +LLS GF ++ + ++ N +
Sbjct: 241 KEGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYDTKQVAKQGEVESKVRVWKGNANQV 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ T + + E + + + K
Sbjct: 301 EAIFAKDAYLTLPRSMTAGLDKSVVLN-EPLIAPIAQGDEIGKVVWK 346
>gi|332532441|ref|ZP_08408319.1| D-alanyl-D-alanine carboxypeptidase [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038084|gb|EGI74531.1| D-alanyl-D-alanine carboxypeptidase [Pseudoalteromonas haloplanktis
ANT/505]
Length = 387
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 96/334 (28%), Positives = 147/334 (44%), Gaps = 10/334 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ A+ S + Y L+D TG VIAE D PASLTK+MT+YV+
Sbjct: 15 LVCTAAVFSASAQIIPAPPQVNAKGYFLVDFTTGKVIAEGEADTQLAPASLTKMMTSYVI 74
Query: 66 FSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ +K T +T+S+ A S + G +++D +I++S ND VA
Sbjct: 75 GTEIKAGNIATTDMVTVSEKAWAKNFPESSKMFIEVGKQISVDELNHGIIIQSGNDACVA 134
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +E F MN + LG+S +HF+N+HG+ H+TT RDMA L + D P
Sbjct: 135 MAEHIAGSESAFADLMNAHAAKLGMSNSHFINSHGLDTDEHFTTPRDMATLGAALIRDVP 194
Query: 183 QYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
++ K G K N N L DG+KTG T +G+++V SA + D LIA
Sbjct: 195 DEYALYKQKSFTYNGIKQYNRNSLLWDESLDVDGIKTGHTSEAGYSLVTSATKNDMRLIA 254
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE-- 295
V++G R S LL+ GF + + N N I E+
Sbjct: 255 VVMGTSSERARKVESKKLLNYGFRFYETITPYKAGDSFAEQRIWMGNKENVSLGILEDTP 314
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + N + E+ K+ L
Sbjct: 315 ITIPRGQHKNLKANFELDNTLEAPLAKGTKVGTL 348
>gi|194428756|ref|ZP_03061292.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171]
gi|194436027|ref|ZP_03068129.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
gi|215487233|ref|YP_002329664.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O127:H6 str.
E2348/69]
gi|218554572|ref|YP_002387485.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli IAI1]
gi|218705552|ref|YP_002413071.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli UMN026]
gi|293405492|ref|ZP_06649484.1| dacD [Escherichia coli FVEC1412]
gi|298381180|ref|ZP_06990779.1| dacD [Escherichia coli FVEC1302]
gi|307312424|ref|ZP_07592058.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli W]
gi|312967243|ref|ZP_07781459.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 2362-75]
gi|331668710|ref|ZP_08369558.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli TA271]
gi|194413203|gb|EDX29489.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B171]
gi|194424755|gb|EDX40740.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
gi|215265305|emb|CAS09700.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli O127:H6 str. E2348/69]
gi|218361340|emb|CAQ98928.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli IAI1]
gi|218432649|emb|CAR13544.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli UMN026]
gi|222033782|emb|CAP76523.1| Penicillin-binding protein 6B [Escherichia coli LF82]
gi|291427700|gb|EFF00727.1| dacD [Escherichia coli FVEC1412]
gi|298278622|gb|EFI20136.1| dacD [Escherichia coli FVEC1302]
gi|306907595|gb|EFN38098.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli W]
gi|312288051|gb|EFR15955.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 2362-75]
gi|312946640|gb|ADR27467.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O83:H1 str.
NRG 857C]
gi|315061285|gb|ADT75612.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli W]
gi|320193299|gb|EFW67937.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327]
gi|323378135|gb|ADX50403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli KO11]
gi|330911850|gb|EGH40360.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86]
gi|331063904|gb|EGI35815.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli TA271]
Length = 388
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|319796225|ref|YP_004157865.1| beta-lactamase [Variovorax paradoxus EPS]
gi|315598688|gb|ADU39754.1| Beta-lactamase [Variovorax paradoxus EPS]
Length = 389
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 97/351 (27%), Positives = 157/351 (44%), Gaps = 15/351 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+R ++ A ++ + Y LLD ++A+ D P PASLTKLM
Sbjct: 8 LRALVLTAAASVGVIAAAQVPAPPEVAARSYLLLDVTANQILAQKDIDSPVEPASLTKLM 67
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
+AY+VF L+ KK LT +S A + P S + +++ +K LIV+S ND
Sbjct: 68 SAYIVFDALRAKKITLTQTFPVSPRAWKMPGSRMFIDPKMQVPVEDLIKGLIVQSGNDAT 127
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + T + FV+ MN +K LG+ T + N G+ GH TTARD++IL+ R+ D
Sbjct: 128 VALAEGVGGTVEHFVELMNAQAKALGMKNTSYKNPEGLTAPGHTTTARDLSILATRLVRD 187
Query: 181 FPQYMHYFQIKGLEI---KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-- 235
FP+ Y+ IK N N + DG+KTG T A+G+ ++A+A +
Sbjct: 188 FPEEAKYYAIKKYRYPGTPSTNDTNRNLLLFRDPTVDGLKTGHTEAAGYCMIATAKRDFP 247
Query: 236 ----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNE 288
+ L++++LGA R S LL+ G+ + + + N
Sbjct: 248 NLTGGRRLLSIVLGASSETVRANESQKLLNWGYTAYDAVRLFDAGQPAATPAVWKGKENV 307
Query: 289 VPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ E V TQ+ + F ++ + LK + +
Sbjct: 308 LKLGRPEAIVVAVPAGSASKIKTQVARPDPLVAPFTKYQAVGSLKVTLDDQ 358
>gi|169632895|ref|YP_001706631.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
(precursor) [Acinetobacter baumannii SDF]
gi|169151687|emb|CAP00477.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
(precursor) [Acinetobacter baumannii]
Length = 382
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 84/339 (24%), Positives = 150/339 (44%), Gaps = 12/339 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S LS Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 7 IAALLLLPSFSYAATVLSAPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSY 66
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + + ++++A S T T+ L+ +I++S ND +
Sbjct: 67 IIEQKLLKGELTENEQVRMNESAWCKGSSSESCMYVPLNGTATVLEMLRGIIIQSGNDAS 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA+L+ I D
Sbjct: 127 KAMAEHIAGNEGTFAHMMNQEAKRIGMTNTQFINSTGMPAEGHYSTAKDMAVLAQHIIKD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + S+ +G LI
Sbjct: 187 SSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPMRLI 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISE 294
+VI G + R + +LL+ GF N + + F ++N +
Sbjct: 247 SVIFGTPSMSERADQTRALLAWGFANFETANVQPANQVLAKAKVWFGKENEVQVGLAENF 306
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
V + + TQ+ + + +K ++ +
Sbjct: 307 NVTMPKGKADGIKTQLVV---QPNLNAPLQKGQVVGKLV 342
>gi|154500121|ref|ZP_02038159.1| hypothetical protein BACCAP_03781 [Bacteroides capillosus ATCC
29799]
gi|150271211|gb|EDM98480.1| hypothetical protein BACCAP_03781 [Bacteroides capillosus ATCC
29799]
Length = 383
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 86/315 (27%), Positives = 141/315 (44%), Gaps = 4/315 (1%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
T L++ TG ++ E PAS+TK+MT +V + + L +TIS
Sbjct: 31 PTVNCGAAVLMEKETGTILYEQNSHDKLEPASVTKIMTLLLVMEAVDSGRISLDQTVTIS 90
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+A S K+G MT+ + LK + V SAND AVA+AE + +E+ FV MN +
Sbjct: 91 AHAVSMGGSQIWLKEGEQMTVHDLLKAVAVVSANDGAVALAELVAGSEEGFVALMNQRAA 150
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP--QYMHYFQIKGLEIKGKKYP 201
LG++ T F+N G+ GH T+A D+A++S + + P + + L +
Sbjct: 151 ELGMADTTFVNCTGLPAAGHLTSAHDIALMSRELILNHPSIREYTTIWMDSLRDGAFQLT 210
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
NTN + + GA G+KTG T ++ + + A+A +G LIAV+L + R + +LL
Sbjct: 211 NTNKLIRFYDGATGLKTGSTDSALYCLSATAERGGMELIAVVLKSPTSQDRFDAARALLD 270
Query: 262 MGFYNKT--DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
GF N T D + + V + + + N+ + E+
Sbjct: 271 YGFANYTLMDVYPDQALPPIDVLLGEEDCVQPVLSQSSRILVDKAQLNSVTSQINLCENV 330
Query: 320 FIDFEKITLLKNKIT 334
E L +
Sbjct: 331 EAPVEAGQKLGEMVV 345
>gi|304395655|ref|ZP_07377538.1| Beta-lactamase [Pantoea sp. aB]
gi|304356949|gb|EFM21313.1| Beta-lactamase [Pantoea sp. aB]
Length = 420
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 86/352 (24%), Positives = 150/352 (42%), Gaps = 20/352 (5%)
Query: 1 MRQFLV--IIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ V +IA+++ + Y L+D N+G V+AE D
Sbjct: 27 LKRLTVGSLIAISLSHAAIADDVNLKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARR 86
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ +A K G + +
Sbjct: 87 DPASLTKMMTSYVIGQAVKAGKIHQDDLVTVGPDAWATGNPVFKGSSLMFLKPGDRVPVS 146
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++++S ND VA+A+ + ++ FV MNN K LGL THF HG+ G Y+
Sbjct: 147 QLTRGIVLQSGNDACVAMADYVAGSQDAFVNLMNNYVKALGLQNTHFGTVHGLDAEGQYS 206
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P+ ++ K + N N T L DG+KTG T ++
Sbjct: 207 SARDMALIGQALIRDVPEEYAVYKEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTNSA 266
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 267 GYNLVASATEGQMRLISAVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAGKEFASEPV 326
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++ T + + +K ++ +
Sbjct: 327 WFGDNDRVQLGVEKDAYLTIPRGRMKDLKASYVLTNTELHAPLKKNQVVGSI 378
>gi|323524598|ref|YP_004226751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
CCGE1001]
gi|323381600|gb|ADX53691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp.
CCGE1001]
Length = 409
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 88/340 (25%), Positives = 157/340 (46%), Gaps = 15/340 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
V++ + ++ + L+D + V+A PD PASLTKLMTAY+V
Sbjct: 30 VVLPATLAASTAFAQVPPPAVNARSWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLV 89
Query: 66 FSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
F L+ KK + +T S+ S + +T+ + + +IV+S ND A+A+
Sbjct: 90 FEALQTKKIAMDQTVTPSEAVRRVRTDESRMFVEANKPVTVHDLVYGMIVQSGNDAAIAL 149
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E +FV MN ++ LG++ THF + +G+ HYTTA D+A+LS R+ DFP
Sbjct: 150 AELVGGSEAQFVNMMNTEAQRLGMTHTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPD 209
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GD 236
Y + F +K K PN N + DG+KTG T A+G+ ++ASA +
Sbjct: 210 YYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPDAS 269
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNI 292
+ L++V++G + R + S +L+ G+ + Y+ + +
Sbjct: 270 RRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTVRLYKANQVVGTPRVYKGAQDSVQIGV 329
Query: 293 SEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + Q+ + + + +++ K
Sbjct: 330 KSDQYITVPKGMADKVKPQIDQIDPLIAPIANGQQVGTAK 369
>gi|256022304|ref|ZP_05436169.1| D-alanyl-D-alanine carboxypeptidase [Escherichia sp. 4_1_40B]
Length = 388
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 153/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAESWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + + + +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K + + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLNGKELTAPISAHQRVGEI 351
>gi|294142181|ref|YP_003558159.1| D-alanyl-D-alanine carboxypeptidase [Shewanella violacea DSS12]
gi|293328650|dbj|BAJ03381.1| D-alanyl-D-alanine carboxypeptidase [Shewanella violacea DSS12]
Length = 390
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 94/348 (27%), Positives = 153/348 (43%), Gaps = 12/348 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ ++ + S + IA T Y L+D NTG +I E NPASLTK
Sbjct: 8 LKTLILATTVVCSSTYAAPIVTPIAPTVAAKAYVLMDFNTGQIITEENAYESLNPASLTK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K + +SK A S + G +T+D+ +I++S
Sbjct: 68 MMTSYVIGQEMKAGNISPEDEVVVSKKAWSKNFPDSSKMFIEVGKHVTVDDLNHGIIIQS 127
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ +K LG+ +HF NAHG+ H +TA DMAIL
Sbjct: 128 GNDACVAMAEHIAGTEDGFVDLMNSWAKQLGMKDSHFENAHGLDATNHKSTAYDMAILGA 187
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ D P+ + K G K N N + DG+KTG T +G+N+V SA +
Sbjct: 188 ALIRDVPKEYTLYSQKSFTYNGIKQYNRNGLLWDKSMKVDGIKTGHTSGAGYNLVTSATK 247
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
L++V++G + R S LL+ GF Q+ + ++
Sbjct: 248 DGMRLVSVVMGTRSESARKAESKKLLNYGFRFFETITPYKAGDSFVSQKIWYGDKESVDL 307
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ + N + K+ + E + + ++ K
Sbjct: 308 GAITDTPITISRGQAKNLQANFELTKELTAPIAKGETVGRIYFQLNGK 355
>gi|226311980|ref|YP_002771874.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis
NBRC 100599]
gi|226094928|dbj|BAH43370.1| putative D-alanyl-D-alanine carboxypeptidase precursor
[Brevibacillus brevis NBRC 100599]
Length = 394
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 87/351 (24%), Positives = 158/351 (45%), Gaps = 21/351 (5%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYP 47
M++ + + M IF ++IA + +++ +TG V+ E
Sbjct: 1 MKRNGYLALCFLMCFTIFSPMAIAKEKAGQQKSDNHFAPQASSAVMIEADTGTVLYEKNA 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ PAS+TK+MT ++ ++ + LT + S+ A+ S + G MT+++
Sbjct: 61 NEKMPPASITKVMTMLLIMEAVERGELKLTDKVRTSERAASMGGSQIFLQPGEEMTVEDM 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
LK + + S ND +VA+AE L TE+ FV MN ++ LG+ THF+N++G+ HY++A
Sbjct: 121 LKGIAIASGNDASVAMAEHLAGTEESFVTRMNERAQQLGMKNTHFVNSNGLPAANHYSSA 180
Query: 168 RDMAILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
D+AI+S + + ++ NTN V + G DG+KTG+T
Sbjct: 181 GDIAIMSRELLKHEGITKFTGTYQDYLRKDTESPFWLVNTNKLVRFYEGVDGLKTGYTGE 240
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
+ + + A+A + + +IAV+LG D TRN +++ + F +
Sbjct: 241 AKYCLTATAKRNNMRVIAVVLGEPDVKTRNNEVSTMFNYAFTHFKVTPMYKKGEPVRTLV 300
Query: 284 NLSNEVPNISEE----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ I+ V K+ + +T KE KE+ K ++
Sbjct: 301 VDKGQKSQINAVTPHAVSLLMKKGESADTFQKEIVIKEAVHAPIAKNQVIG 351
>gi|144899826|emb|CAM76690.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
gryphiswaldense MSR-1]
Length = 387
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 84/337 (24%), Positives = 144/337 (42%), Gaps = 7/337 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
V++ A+ + + L+D TG ++ E D P+S++KLMTAY+
Sbjct: 11 FVLVCAALTLGGAAARAETIETQARQAILIDYKTGTILLEKNSDELMVPSSMSKLMTAYL 70
Query: 65 VFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VF LKE + + +S+ A + S GS+ + + ++ +I++S ND
Sbjct: 71 VFEKLKEGSWKMDDQLPVSETAWKRHFKSGGSLMFLPVGSSAKVGDLIRGVIIQSGNDAC 130
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+AE+ TE+ F + +++LG+ T NA G H TTARD++IL+ R+ +D
Sbjct: 131 SVLAEAHSGTEEAFAEEATRKARDLGMLHTTLRNASGWPDPEHLTTARDLSILARRLISD 190
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+Y + + G + N N + GADG+KTG T A+G+ +V + +G++ +I
Sbjct: 191 FPEYFPIYSEREFVFNGIRQGNRNPLLYGVSGADGLKTGHTEAAGYGLVGTVKRGERRII 250
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVC 297
VI G R++ SA L+ F + + VP ++ E
Sbjct: 251 MVINGLKSMKERSEESARLMEWAFREFDNYALFKPGDMVTDAEVWLGEAANVPLVAGEKL 310
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
A K L +
Sbjct: 311 EVTMPHKARREMKVTAVYDGPIAAPIRKGETLGKLLI 347
>gi|261821229|ref|YP_003259335.1| beta-lactamase [Pectobacterium wasabiae WPP163]
gi|261605242|gb|ACX87728.1| Beta-lactamase [Pectobacterium wasabiae WPP163]
Length = 401
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 90/330 (27%), Positives = 147/330 (44%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
L + L+D +G V+AE+ D +PASLTK+M +YV+ +K K
Sbjct: 26 FTSAEQLPAVPQIDAKAFILMDHASGKVLAESNADERLDPASLTKIMASYVIGQAIKSGK 85
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
T +T+ K+A K G + + K ++++S ND ++A+A+ +
Sbjct: 86 IRPTDEVTVGKDAWATGNPALRGSSLMFLKPGDRIPVSELNKGIVIQSGNDASIALADYV 145
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN +K L L+ THF+ HG+ G Y+TARDMA+L + D P+
Sbjct: 146 AGSQDAFVSLMNNYAKALNLTNTHFLTVHGLDAAGQYSTARDMALLGQALIRDVPEEYAL 205
Query: 188 FQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ K + PN N T L DG+KTG T +G N+VASA +G+ LI+V+LGA
Sbjct: 206 HKEKEFTFNNIRQPNRNRLLWSTNLNVDGVKTGHTNGAGHNLVASATEGNMRLISVVLGA 265
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKE 302
R + S LL+ GF I + + ++++ T +
Sbjct: 266 QTDAIRFRESEKLLTWGFRFFETVTPIKADAPFTTQRVWFGTEKEARLGVAQDAALTIPK 325
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
N + ++ K ++
Sbjct: 326 GQMKNLKASFTLNQPQLSAPLTKNQVVGTI 355
>gi|84387870|ref|ZP_00990884.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus
12B01]
gi|84377216|gb|EAP94085.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus
12B01]
Length = 373
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 89/326 (27%), Positives = 138/326 (42%), Gaps = 9/326 (2%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + Y L+D N+G V+ E NPASLTKLMT+YV ++
Sbjct: 6 AIAAPSIVPSPPSLGAKGYVLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQEMQRG 65
Query: 73 KAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ IS+NA S + + + + + + LI++S ND +VAIAE +
Sbjct: 66 NISADDQVRISENAWAKNFPDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIAEHVAG 125
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
++ FV MN+ + +L L THF NAHG+ Y+T D+A+L I D P +
Sbjct: 126 SQDAFVDLMNSWATSLKLENTHFANAHGLDADDLYSTPYDIALLGRAIIRDLPDVYGLYS 185
Query: 190 IKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ G N N L DGMKTG+T +G+++ +SA QG+ LIAV++GA
Sbjct: 186 ERSFSYNGITQHNRNGLLRDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAVVMGASS 245
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEII 304
+R S LLS GF + + ++E+ T +
Sbjct: 246 VKSRESDSKQLLSYGFRFFDTLNPHQGGDEVAEEKVWFGAKDTLKLGVAEDTFITLPKSD 305
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLK 330
+ D E + L
Sbjct: 306 SKKLTASIELDSE-LKAPIAEGQTLG 330
>gi|254476532|ref|ZP_05089918.1| D-alanyl-D-alanine carboxypeptidase protein [Ruegeria sp. R11]
gi|214030775|gb|EEB71610.1| D-alanyl-D-alanine carboxypeptidase protein [Ruegeria sp. R11]
Length = 538
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 106/325 (32%), Positives = 164/325 (50%), Gaps = 5/325 (1%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+++ + M+ P + A ++D TG V+ D +PASLTK+MT Y+
Sbjct: 29 LVVFLTMIMAAPPNVGAAP----YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIA 84
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F ++ + L T + IS+NA+ PPS K G + ++ +KSAND A AI E
Sbjct: 85 FEAVRNGEITLDTKVKISRNAAAEPPSKLGLKAGQRIAFRYLIRAAAIKSANDAATAIGE 144
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+L +E F + M T+K LG+S T F NAHG+ ++GH +TARDM L I D+P+Y
Sbjct: 145 TLSGSEAAFARRMTRTAKALGMSRTTFKNAHGLTENGHMSTARDMTTLGRHILYDYPEYY 204
Query: 186 HYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ F K + + PNTN + + GADG+KTG+T A+GFN+VASA +G++ +IA +
Sbjct: 205 NLFSRKSADAGVRTVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAQRGNERVIATVF 264
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
G +RN A LL +GF K+ + YQ N + + + +
Sbjct: 265 GGKSSTSRNAKVAELLDLGFRRAPSHAKLRRPAQPPYQGNRGLGTQVANADGTAGKTVRV 324
Query: 305 NYNTQMKEAKDKESHFIDFEKITLL 329
+ + + E TLL
Sbjct: 325 SGLVKTSLRPKQRPVSETQEPATLL 349
>gi|77359968|ref|YP_339543.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Pseudoalteromonas haloplanktis TAC125]
gi|76874879|emb|CAI86100.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Pseudoalteromonas haloplanktis TAC125]
Length = 387
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 98/334 (29%), Positives = 150/334 (44%), Gaps = 10/334 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ + A+ S + Y L+D TG VIA+ D PASLTK+MT+YV+
Sbjct: 15 LVCSAAVFSATAQIIPAPPQVNAKGYFLVDFTTGKVIAQGEADTKLAPASLTKMMTSYVI 74
Query: 66 FSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ +K T +T+S+ A S + G +++D+ +I++S ND VA
Sbjct: 75 GTEVKAGNIAPTDMVTVSEKAWAKNFPESSKMFIEVGKQISVDDLNHGIIIQSGNDACVA 134
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +E F MN + LG+S THF+N+HG+ HYTT RDMA L + D P
Sbjct: 135 MAEHIAGSESAFADLMNAHAAKLGMSNTHFINSHGLDTDAHYTTPRDMATLGGALIRDVP 194
Query: 183 QYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
++ K G K N N L DG+KTG T +G+++V SA + D LIA
Sbjct: 195 DEYALYKKKSFTYNGIKQYNRNSLLWDESLDVDGIKTGHTSDAGYSLVTSATKNDMRLIA 254
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE-- 295
V++G R + S LL+ GF + + N N I E+
Sbjct: 255 VVMGTSSERARKEESKKLLNYGFRFYETITPYKAGDSFAEQRIWMGNKENVSLGILEDTP 314
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + N K E+ K+ L
Sbjct: 315 ITIPRGQHKNLKANFKLDNTLEAPLAKGTKVGTL 348
>gi|167579652|ref|ZP_02372526.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis TXDOH]
Length = 375
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 84/332 (25%), Positives = 150/332 (45%), Gaps = 15/332 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 4 ATYAPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDSKK 63
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 64 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 123
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN ++ LG++ THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 124 AQFVNMMNAQAQRLGMTHTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVK 183
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++
Sbjct: 184 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMM 243
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCT 298
G + R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 244 GETKESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIDTPRVYKGKSNNVQVGVKKDQFITV 303
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 304 PRGLADKVKPEVALNAPLIAPLADGQAVGSVK 335
>gi|304391674|ref|ZP_07373616.1| D-alanyl-D-alanine carboxypeptidase DacC [Ahrensia sp. R2A130]
gi|303295903|gb|EFL90261.1| D-alanyl-D-alanine carboxypeptidase DacC [Ahrensia sp. R2A130]
Length = 384
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 78/322 (24%), Positives = 134/322 (41%), Gaps = 8/322 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + ++D TG V+ + D PAS+ KLMT VVF +K L
Sbjct: 19 AFAQSFETAAKQAIVMDYETGSVLFQKNADELMPPASMAKLMTMEVVFDAVKRGALELDD 78
Query: 79 PITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
TISK+ + S + L+N ++ +IV+S ND A+AIAE + +E
Sbjct: 79 TFTISKDVWQRGGATSGGSTMFADLNDDIALENLIRGVIVQSGNDAAMAIAEGMAGSETG 138
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN ++ +GL ++F N+ G+ TAR++ +L+ + +P+ +
Sbjct: 139 FAGLMNQRARRIGLEKSNFTNSTGLPDPNQRVTARELGLLARHLIRTYPELYQIYAEPEF 198
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ N N +G GADG+KTG+T ASG+ + ASA GD+ +I V+ G + R
Sbjct: 199 TWNKVRQRNRNPILGRVDGADGLKTGYTEASGYGLTASAKVGDKRIIIVLNGMSSQAERR 258
Query: 254 KVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+ ++ F K + + VP +E + + +
Sbjct: 259 NEAIKMMRWAFRAFQSIKLFEEGEIVGEATLFGGAKSGVPLKAEGALSIFVPVGFRDRLK 318
Query: 311 KEAKDKESHFIDFEKITLLKNK 332
+ + E T +
Sbjct: 319 ADIVFQGPIKAPVEAGTRIGKL 340
>gi|218695635|ref|YP_002403302.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli 55989]
gi|218352367|emb|CAU98141.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli 55989]
Length = 388
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAVNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|254459679|ref|ZP_05073095.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium
HTCC2083]
gi|206676268|gb|EDZ40755.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium
HTCC2083]
Length = 392
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 84/342 (24%), Positives = 149/342 (43%), Gaps = 8/342 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR + IA ++ I + A + ++D TG V+ D PAS++K+M
Sbjct: 1 MRHLITTIAALVVPLILALPAGAFETRAASAFVIDQTTGTVLLNKNADQMLPPASMSKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L++ + +L + +SK+A Y S +T+++ ++ +IV S ND
Sbjct: 61 TLYITFEALRDGRLVLDEKLPVSKHAMAYGGSTMFLDTTDRITVEDLIRGIIVLSGNDAC 120
Query: 121 VAIAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
IAE+L E F + M ++ LG++ + F N++G Q GH + RD+A+L+ R+
Sbjct: 121 AVIAEALSPDGTEAGFARFMTQRAQQLGMTNSTFSNSNGWPQAGHRMSMRDLALLANRVI 180
Query: 179 TDFPQYMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
TDFP + F + + + N N + +GADG+KTG T +G+ +V SA Q
Sbjct: 181 TDFPSFYPLFSEREFKFDGRAPQNTRNRNPLLSLGIGADGLKTGHTQEAGYGLVGSAKQR 240
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNI 292
+ +I VI G R + + S+++ F + +V +
Sbjct: 241 GRRVIFVISGLQSAQARAEEAESIVNWAFRQFAVKPVAKAGTSVATADVWMGRDQKVQLV 300
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
E + + + E EK + +
Sbjct: 301 PMEDVSMLMPVTTGVKVVAEVIYNGPITAPIEKDQQIAELVI 342
>gi|157155424|ref|YP_001463361.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E24377A]
gi|157077454|gb|ABV17162.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A]
gi|323961778|gb|EGB57379.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489]
Length = 388
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|157376621|ref|YP_001475221.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sediminis
HAW-EB3]
gi|157318995|gb|ABV38093.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sediminis
HAW-EB3]
Length = 395
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 95/348 (27%), Positives = 153/348 (43%), Gaps = 12/348 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPF--LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ ++ +A A T + L+D NTG VIAE NPASLTK
Sbjct: 13 LKTLILATTVACSFAYAAPVVTPNAPTVAAKAFILMDYNTGQVIAEENAYESLNPASLTK 72
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+MT+YV+ +K +TISK A S + G +T+D+ +I++S
Sbjct: 73 MMTSYVIGHEIKVGNISPDDKVTISKKAWSKNFPDSSKMFIEVGKQVTVDDLNHGIIIQS 132
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+AE + TE FV MN+ SK LG+ ++F N+HG+ H TTA DMA+L
Sbjct: 133 GNDACVAMAEHIAGTEDGFVDLMNSWSKQLGMEDSYFENSHGLDSENHKTTAYDMALLGA 192
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ D P+ ++ K K N N + DG+KTG T +G+N+V SA +
Sbjct: 193 ALIRDVPEEYVLYKKKSFTYNSIKQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVTSATK 252
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
L+AV++G + R S +L+ GF QQ + ++
Sbjct: 253 DGMRLVAVVMGTKSESARKAESKKILNYGFRFFETITPYKAGESFVTQQIWYGDKESVDL 312
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ + N + K+ + E + + ++ K
Sbjct: 313 GVLTDTPITISRGQAKNLQANFELTKELTAPLAKGETVGRIFFQLNGK 360
>gi|83718804|ref|YP_440938.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis E264]
gi|257140407|ref|ZP_05588669.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis E264]
gi|83652629|gb|ABC36692.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis E264]
Length = 436
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 84/331 (25%), Positives = 148/331 (44%), Gaps = 15/331 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 66 TYAPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKI 125
Query: 75 MLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 126 TMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 185
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 186 QFVNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVKE 245
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILG 245
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 246 FTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMG 305
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTT 299
+ R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 306 ETKESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIDTPRVYKGKSNNVQVGVKKDQFITVP 365
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 366 RGLADKVKPEVALNAPLIAPLADGQAVGSVK 396
>gi|306814866|ref|ZP_07449028.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli NC101]
gi|305852260|gb|EFM52712.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli NC101]
Length = 388
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWAKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|327253142|gb|EGE64796.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli STEC_7v]
Length = 388
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 153/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T K ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVKILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +E + + + K D + +
Sbjct: 301 YGDKETIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|28901449|ref|NP_801104.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
2210633]
gi|260363002|ref|ZP_05775871.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus K5030]
gi|260880289|ref|ZP_05892644.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus AN-5034]
gi|260896672|ref|ZP_05905168.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus Peru-466]
gi|28809996|dbj|BAC62937.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
2210633]
gi|308085410|gb|EFO35105.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus Peru-466]
gi|308091912|gb|EFO41607.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus AN-5034]
gi|308112244|gb|EFO49784.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus K5030]
Length = 385
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 88/347 (25%), Positives = 154/347 (44%), Gaps = 13/347 (3%)
Query: 1 MR----QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M+ ++ ++ + + + Y L+D +G +IAE+ PASL
Sbjct: 1 MKVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEHNGRAGLAPASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+
Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L
Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMAKL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASA 232
I +D P + K + N N + DG KTG+T +G+++V+SA
Sbjct: 181 MQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNE 288
+G LI+V++G + R S +LLS GF ++ + ++ N +
Sbjct: 241 KEGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYDTKQVAKQGQVESKVRVWKGNANQV 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ T + + E + + + K
Sbjct: 301 EAIFAKDAYLTLPRSMTAGLDKSVVLN-EPLIAPIAQGDEIGKVVWK 346
>gi|257413914|ref|ZP_04744661.2| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
L1-82]
gi|257201876|gb|EEV00161.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
L1-82]
Length = 402
Score = 204 bits (517), Expect = 2e-50, Method: Composition-based stats.
Identities = 91/340 (26%), Positives = 154/340 (45%), Gaps = 11/340 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
V I ++ + + P L++ +TG V+ E +PAS+TK+MT ++
Sbjct: 27 VTIPLSPAAQTDTAPAADLNISAPSAILMEASTGAVVYEKNSHEARHPASVTKIMTLLLI 86
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F L K+ L +T+S+ A+ S + G T T++ +K + V SAND VA+AE
Sbjct: 87 FDALSSKQISLDDTVTVSEYAASMGGSQVFLEPGETQTVETMIKCISVASANDACVAMAE 146
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+ +E +FV+ MN +K LG++ T+F+N G+ GH T+A D+A++S + T +P+
Sbjct: 147 HVAGSESEFVRMMNERAKGLGMNDTNFVNCCGLDADGHMTSANDIALMSRELITKYPKIH 206
Query: 186 HYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
Y I I NTN + + A G+KTGFT + + I A+A + D
Sbjct: 207 DYCTIWMENITHTTAKGSSEFGLTNTNKLIKHYQYATGLKTGFTNTAMYCISATAKKDDM 266
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISE 294
LIAVI+GA D +R+ + +LL+ GF D + + +
Sbjct: 267 ELIAVIMGAPDIKSRSADATTLLNYGFGKCRIYCDSHEDKLDDLPVEKGLADSVGIIYQR 326
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + K + E+ +K +
Sbjct: 327 PFQYMTTDGSDLTGITKSIELPENVTAPVKKGNTAGKAVY 366
>gi|330861526|emb|CBX71735.1| D-alanyl-D-alanine carboxypeptidase dacC [Yersinia enterocolitica
W22703]
Length = 428
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 95/346 (27%), Positives = 152/346 (43%), Gaps = 14/346 (4%)
Query: 1 MRQFLV---IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+++ ++ +A+ A Y L+D N+G V+AE D +PASLT
Sbjct: 41 LKKLTFSAGLLLLALPYAHAADSPAAPAIDAKAYVLMDYNSGKVLAEGNSDQRLDPASLT 100
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
K+M++YV+ +K K +T+ K+A K G + L + K +
Sbjct: 101 KIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATGNPALRGSSLMFLKPGDQVKLSDLNKGI 160
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+++S ND ++A+A+ + ++ FV MNN +K LGL+ T+FM HG+ G Y+TA DMA
Sbjct: 161 VIQSGNDASIALADYIAGSQDSFVGLMNNYAKALGLNNTNFMTVHGLDAPGQYSTAHDMA 220
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVA 230
+L + D P + K + N N T L DGMKTGFT +G N+VA
Sbjct: 221 VLGQALIRDVPDEYALHKEKEFTFNKIRQINRNRLLWSTNLNVDGMKTGFTAGAGHNLVA 280
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLS 286
SA G LI+V+LGA R S LL+ GF I + +
Sbjct: 281 SATDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRFYETVVPIKATKPFVAQKVWFGDTG 340
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++E+ T + N + ++ K ++
Sbjct: 341 QAELGVAEDAAITIPKGQMKNLKASYKLNETELRAPLAKHQVVGTI 386
>gi|161502774|ref|YP_001569886.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864121|gb|ABX20744.1| hypothetical protein SARI_00825 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 390
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 147/349 (42%), Gaps = 18/349 (5%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAINAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + + LL G N + ++ K +
Sbjct: 245 LIASAVDGQRRLIAVVMGAESSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIWYG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++ + + + K DK+ +
Sbjct: 305 DREKIALGAEQDFWMALPKAEIPHIKAKYVLDKKDLEAPIAAHQRVGEI 353
>gi|188492414|ref|ZP_02999684.1| penicillin binding protein 6B [Escherichia coli 53638]
gi|188487613|gb|EDU62716.1| penicillin binding protein 6B [Escherichia coli 53638]
Length = 388
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|54302470|ref|YP_132463.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
profundum SS9]
gi|46915892|emb|CAG22663.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
profundum SS9]
Length = 394
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 90/343 (26%), Positives = 147/343 (42%), Gaps = 14/343 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
++ + M S F + + L+ +G VIA + P PASL
Sbjct: 7 LKHLSLFTLFTMASLPFSASADVLPSPPVIDAKAWLLMSYESGQVIASFNENEPLAPASL 66
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TK+MT+YVV + + IS+NA S G +T+D K +I+
Sbjct: 67 TKIMTSYVVGKEINAGHINNDDLVIISENAWGKKFPGSSKMFLNIGDNVTVDQLNKGVII 126
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND VA+AE + + F++ MN ++ +G+ T+F N HG+ +TTA D+AIL
Sbjct: 127 SSGNDATVALAEHVAGHQAAFIEMMNRQAEVIGMQNTYFTNPHGLDADEQFTTAYDIAIL 186
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA 232
+ + D P+ F+ K K N N T L DG+KTG T +G+++V+SA
Sbjct: 187 TRALIKDLPEMYGLFKEKSFTFHDIKQGNRNGLLWDTTLNVDGVKTGHTSKAGYSLVSSA 246
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
Q Q IAV++G R S LL+ GF D + + +
Sbjct: 247 EQSGQRFIAVVMGTKSTGIRRSESKKLLTWGFRFYQDLTPTFDGKELEPIKVWYGSPSKV 306
Query: 293 SEE------VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
S E + +++ N ++ + E+ E++ +
Sbjct: 307 SVELGDGGVITVPRRQRKNLEHKVFYNSNLEAPISKGEQVGKI 349
>gi|238920819|ref|YP_002934334.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella
ictaluri 93-146]
gi|238870388|gb|ACR70099.1| D-alanyl-D-alanine carboxypeptidase DacC [Edwardsiella ictaluri
93-146]
Length = 403
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 84/330 (25%), Positives = 145/330 (43%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE+ D NPASLTK+MT+YV+ ++ K
Sbjct: 32 VNLKTMIPGVPQIDAEAYILIDYNSGKVLAEHNADERRNPASLTKMMTSYVIGQAMRAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G +++ N ++ + + S ND VA+A+ +
Sbjct: 92 FGENDVVTVGKDAWATGNPVFQGSSLMFLKPGDQVSVGNLIRGINLVSGNDACVAMADYV 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN+ K LGL THF HG+ G +++ARDMA++ + D P
Sbjct: 152 AGSQDAFVGLMNSYVKALGLQNTHFETVHGLDAPGQFSSARDMALIGQALIRDVPHEYAI 211
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T + DG+KTG T ++G+N+VASA +G+ LI+ ++G
Sbjct: 212 YKEKEFTYNNIRQTNRNGLLWDTSMNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 272 RTFKGRETESKKLLTWGFRFFETVSPLKAGREFASEPVWFGDTDRAQLGVDKDVYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + K ++
Sbjct: 332 GRMKDLKASYVLNSNELDAPLAKDQVVGTI 361
>gi|218708731|ref|YP_002416352.1| putative Penicillin-binding protein [Vibrio splendidus LGP32]
gi|218321750|emb|CAV17705.1| putative Penicillin-binding protein [Vibrio splendidus LGP32]
Length = 393
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 90/341 (26%), Positives = 151/341 (44%), Gaps = 12/341 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + ++ F + A + L+D ++G V+AE + +PASLTK+MT+
Sbjct: 16 VALSATIATSSFAAPIIVPDAPQIAAKGFVLMDYHSGKVLAEKEMNTQLSPASLTKMMTS 75
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YVV L+ L + IS+NA S + G+T+ ++ + +I++S ND
Sbjct: 76 YVVGQELERGNINLNDDVVISENAWAKNFPDSSKMFIEVGTTVKVEELNRGIIIQSGNDA 135
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VA+AE + +E FV MN + ++G+ THF N HG+ Y+T DMA+L +
Sbjct: 136 CVAMAEHIAGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIR 195
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P + K G N N + DG+KTG T +G+++V+SA +G
Sbjct: 196 DVPDEYRIYSQKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMR 255
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE 294
L+AV++G + N R S LLS GF + + + + E
Sbjct: 256 LVAVVMGTKNANARKTESKKLLSYGFRFFETVAPHTAGETFVEEKIWMGSKDTVALGVDE 315
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T N + +KE K ++ +
Sbjct: 316 DTFVTLPRGQAKNLKASFVLEKE-LEAPISKGDVVGKLFYQ 355
>gi|89108830|ref|AP_002610.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12
substr. W3110]
gi|162135904|ref|NP_416514.4| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli str. K-12 substr. MG1655]
gi|170081640|ref|YP_001730960.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli str. K-12 substr. DH10B]
gi|238901200|ref|YP_002926996.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli BW2952]
gi|3183515|sp|P33013|DACD_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
Full=Penicillin-binding protein 6b; Short=PBP-6b; Flags:
Precursor
gi|85675189|dbj|BAA15838.2| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12
substr. W3110]
gi|87082022|gb|AAC75071.2| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli str. K-12 substr. MG1655]
gi|169889475|gb|ACB03182.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli str. K-12 substr. DH10B]
gi|238860731|gb|ACR62729.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli BW2952]
gi|260448889|gb|ACX39311.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1]
gi|315136643|dbj|BAJ43802.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli DH1]
gi|332343793|gb|AEE57127.1| D-alanyl-D-alanine carboxypeptidase DacD [Escherichia coli UMNK88]
Length = 388
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|193071481|ref|ZP_03052393.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
gi|192955203|gb|EDV85694.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
Length = 388
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 94/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G Y++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQYSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|114327736|ref|YP_744893.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter
bethesdensis CGDNIH1]
gi|114315910|gb|ABI61970.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter
bethesdensis CGDNIH1]
Length = 419
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 81/315 (25%), Positives = 133/315 (42%), Gaps = 4/315 (1%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ ++D NTG + + D P+S+TKLMTAY+V+ LK K + + +
Sbjct: 68 PYDTVAKWAVVVDFNTGATLLDKEADVQMPPSSMTKLMTAYIVYGELKAGKLQMDQMLPV 127
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S+ A S ++ +++ ++ +IV S ND + +AE + +E++FV MN +
Sbjct: 128 SEKAWRLQGSKMFVPYPGSVKVEDLIRGMIVDSGNDACIVLAEGIAGSEQQFVDLMNQKA 187
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
K LGL+ ++F N G+ H+ + RD+A L+ RI DFP+Y H+ K + + N
Sbjct: 188 KLLGLTNSNFENCTGMPSANHHMSVRDIATLARRIIQDFPEYYHFDSEKTFKYNNIEQQN 247
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N V + ADG+KTG T A G+ + ASA + + +I V+ G + R S LL
Sbjct: 248 RNPLVQKGI-ADGLKTGHTDAGGYGVCASAERNKRRVILVVNGLTTSHQRASESERLLEW 306
Query: 263 GFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
F + S VP + +
Sbjct: 307 AFSQFENVTLFTAGDTIDSAPVYLGTSKTVPLVGGKDLVVTMPRQWQKKAKISISYDAPV 366
Query: 320 FIDFEKITLLKNKIT 334
K L
Sbjct: 367 RAPVTKGAALGTLTI 381
>gi|168238798|ref|ZP_02663856.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|194734763|ref|YP_002115095.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194710265|gb|ACF89486.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197288431|gb|EDY27812.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase) [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
Length = 390
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 151/349 (43%), Gaps = 21/349 (6%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + + LL G N + ++ K +
Sbjct: 245 LIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGLQNFATVQILHSGKKVGSERIWYG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEKITLL 329
+ ++ + + + K K+ E+ +++ +
Sbjct: 305 DKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQQVGEI 353
>gi|86144247|ref|ZP_01062579.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222]
gi|85837146|gb|EAQ55258.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222]
Length = 381
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 88/332 (26%), Positives = 137/332 (41%), Gaps = 9/332 (2%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
I + + Y L+D N+G V+ E NPASLTKLMT+YV
Sbjct: 8 AIVANTAVAAPSIVPSPPSLGAKGYVLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAG 67
Query: 67 SFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+K + IS+NA S + + + + + + LI++S ND +VAI
Sbjct: 68 QEMKRGNISADDQVRISENAWAKNFPDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAI 127
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + ++ FV MN+ + +L L THF NAHG+ Y+T D+A+L I D P
Sbjct: 128 AEHVAGSQDAFVDLMNSWAASLKLENTHFANAHGLDADDLYSTPYDIALLGRAIIRDLPD 187
Query: 184 YMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ + N N L DGMKTG+T +G+++ +SA QG+ LIAV
Sbjct: 188 VYGLYSERSFSYNKITQHNRNGLLRDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAV 247
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCT 298
++GA +R S LLS GF + + ++E+
Sbjct: 248 VMGASSVKSRESDSKQLLSYGFRFFDTLNPHQGGDQVAEEKVWFGAQDTLKLGVAEDTFI 307
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
T + + + + L
Sbjct: 308 TLPKSDSKKLTASI-ELISELKAPISEGQTLG 338
>gi|323968145|gb|EGB63554.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863]
Length = 388
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 153/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVGRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T K ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVKILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +E + + + K D + +
Sbjct: 301 YGDKETIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|317047293|ref|YP_004114941.1| beta-lactamase [Pantoea sp. At-9b]
gi|316948910|gb|ADU68385.1| Beta-lactamase [Pantoea sp. At-9b]
Length = 428
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 87/352 (24%), Positives = 148/352 (42%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPF---------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ V +A+ + + Y L+D N+G V+AE D
Sbjct: 35 LKRLTVGSLVALSLSHAAIADDVNLKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARR 94
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ K+A K G + +
Sbjct: 95 DPASLTKMMTSYVIGQAVKAGKIHQDDIVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 154
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++++S ND VA+A+ + ++ FV MNN + LGL THF HG+ G Y+
Sbjct: 155 QLTRGIVLQSGNDACVAMADYVAGSQDAFVNLMNNYVQALGLKNTHFQTVHGLDADGQYS 214
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P + K + N N T L DG+KTG T A+
Sbjct: 215 SARDMALIGQALIRDVPDEYAVYHEKEFTFNNIRQLNRNGLLWDTSLNVDGIKTGHTDAA 274
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 275 GYNLVASATEGQMRLISAVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAGKEFASEPV 334
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N + ++ T + + + +K ++ +
Sbjct: 335 WFGNSDRVQLGVEKDAYLTIPRGRMKDLKASYVLNNTELHAPLQKNQVVGSI 386
>gi|107023825|ref|YP_622152.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
AU 1054]
gi|105894014|gb|ABF77179.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Burkholderia cenocepacia AU 1054]
Length = 529
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 14/342 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ P + L+D + V+A D PASLTKLMTAY+VF
Sbjct: 154 FTGAPATYMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEA 213
Query: 69 LKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L +KK + +T S S + +++ + + +I++S ND A+A+AE
Sbjct: 214 LDKKKISMEQIVTPSDAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAEL 273
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E +FV MN+ + LG+ THF + +G+ HYTTA D+A LS + DFPQY
Sbjct: 274 VGGSEGQFVTMMNDEAGRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYS 333
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLI 240
F K + + N N + DG+KTG T A+G+ ++ASA + G + L+
Sbjct: 334 IFSEKEFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLV 393
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE- 295
+V++G + R + S +L+ G+ + Y+ + + +
Sbjct: 394 SVMMGEQKESERTQDSMKMLNYGYSAFDSVRLFKGGQAISTPRIYKGKDNTVQVGVKGDQ 453
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ T++ + + +++ +K K
Sbjct: 454 WATVPRGLGDKVKTEVDVNAPLIAPLAEGQQVGTVKIVADGK 495
>gi|24112205|ref|NP_706715.1| putative D-alanyl-D-alanine carboxypeptidase, fraction A;
penicillin-binding protein 5 [Shigella flexneri 2a str.
301]
gi|24051049|gb|AAN42422.1| putative D-alanyl-D-alanine carboxypeptidase, fraction A;
penicillin-binding protein 5 [Shigella flexneri 2a str.
301]
Length = 338
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 93/295 (31%), Positives = 142/295 (48%), Gaps = 7/295 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 24 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 83
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 84 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 143
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 144 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 203
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 204 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 263
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I Q+ + ++
Sbjct: 264 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKIEVN 318
>gi|218690072|ref|YP_002398284.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ED1a]
gi|218427636|emb|CAR08547.2| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli ED1a]
Length = 388
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNIDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|37525520|ref|NP_928864.1| penicillin-binding protein 6 precursor (D-alanyl-D-alanine
carboxypeptidase fraction C) (DD-pept
(DD-carboxypeptidase) (PBP-6)idase) [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36784948|emb|CAE13866.1| penicillin-binding protein 6 precursor (D-alanyl-D-alanine
carboxypeptidase fraction C) (DD-pept
(DD-carboxypeptidase) (PBP-6)idase) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 400
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 90/346 (26%), Positives = 153/346 (44%), Gaps = 14/346 (4%)
Query: 1 MRQFLVIIAMAMLSNI---FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
++ + ++ +A + + + Y L+D ++G ++A PD +PASLT
Sbjct: 9 IKCVVAVLTVASMVSARVYASDEPVVPPVDARAYVLMDYDSGKILAAGNPDERLDPASLT 68
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
K+MT+YVV +K K +T+ K+A K G + + + +
Sbjct: 69 KIMTSYVVGQAIKAGKITPEDIVTVGKDAWATGNPILKGSSLMFLKPGDRVKVIDLNHGV 128
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+V+S ND ++A+A+ + ++ FV MNN +K LGL+ THF HG+ G ++TARDMA
Sbjct: 129 VVQSGNDASIALADYVAGSQDVFVSLMNNYAKALGLTNTHFRTVHGLDAEGQFSTARDMA 188
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVA 230
+LS + D P + K + PN N + DG+KTG+T +G+N+VA
Sbjct: 189 VLSQAMIRDVPDEYALHKEKTFTFNKIQQPNRNRLLWNKNMNVDGVKTGYTSGAGYNLVA 248
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLS 286
SA +G LI+V+LGA R S LL+ G I + S
Sbjct: 249 SATEGPMRLISVVLGAPSDRIRFVESEKLLAWGLRFYETVTPIKASEPFVSQKVWYGGRS 308
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++ T N + ++ K ++
Sbjct: 309 DVALGVEKDAAITIPRGQLKNLKASYTLNQTPLTAPLTKNQVVGVI 354
>gi|323495455|ref|ZP_08100532.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546]
gi|323310378|gb|EGA63565.1| D-alanyl-D-alanine carboxypeptidase [Vibrio brasiliensis LMG 20546]
Length = 392
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 92/341 (26%), Positives = 152/341 (44%), Gaps = 12/341 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ ++ S+ F + A Y L+D ++G V+AE + +PASLTK+MT+
Sbjct: 15 IALSATFASSAFASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTS 74
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV+ L+ L +TISKNA S + G+T+ +++ + +I++S ND
Sbjct: 75 YVIGQELERGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNRGIIIQSGNDA 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VA+AE + +E FV MN + +G+ THF N HG+ Y+T DMA+L +
Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNSNLYSTPYDMALLGSALIR 194
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K G N N + DG+KTG T +G+++V+SA +G
Sbjct: 195 DVPEEYRIYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE 294
L+AV++G + N R S LLS GF + + N + +
Sbjct: 255 LVAVVMGTKNANARKSESKKLLSYGFRFFETVAPHKAGETFVEEKIWMGNKDTVALGLDQ 314
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T N + +KE K ++ +
Sbjct: 315 DTYVTLPRGQAKNLKASFILEKE-LEAPIMKGDVVGKLYYQ 354
>gi|269139992|ref|YP_003296693.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella tarda
EIB202]
gi|267985653|gb|ACY85482.1| D-alanyl-D-alanine carboxypeptidase fraction A [Edwardsiella tarda
EIB202]
gi|304559825|gb|ADM42489.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60]
Length = 403
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 84/330 (25%), Positives = 145/330 (43%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE+ D NPASLTK+MT+YV+ ++ K
Sbjct: 32 VNLKTMIPGVPQIDAEAYILIDYNSGKVLAEHNADERRNPASLTKMMTSYVIGQAMRAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G +++ N ++ + + S ND VA+A+ +
Sbjct: 92 FGENDVVTVGKDAWATGNPVFQGSSLMFLKPGDQVSVGNLIRGINLVSGNDACVAMADYV 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN+ K LGL THF HG+ G +++ARDMA++ + D P
Sbjct: 152 AGSQDAFVGLMNSYVKALGLQNTHFETVHGLDASGQFSSARDMALIGQALIRDVPHEYAI 211
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T + DG+KTG T ++G+N+VASA +G+ LI+ ++G
Sbjct: 212 YKEKEFTYNNIRQTNRNGLLWDTSMNVDGIKTGHTASAGYNLVASATEGNMRLISAVMGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 272 RTFKGRETESKKLLTWGFRFFETVSPLKAGREFASEPVWFGDTDRAQLGVDKDVYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + K ++
Sbjct: 332 GRMKDLKASYVLNSNELDAPLAKDQVVGTI 361
>gi|191167708|ref|ZP_03029516.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
gi|190902221|gb|EDV61962.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
gi|323948386|gb|EGB44371.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120]
Length = 388
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 154/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|294637512|ref|ZP_06715798.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
23685]
gi|291089344|gb|EFE21905.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
23685]
Length = 403
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 87/361 (24%), Positives = 153/361 (42%), Gaps = 29/361 (8%)
Query: 1 MRQFLVIIAM------AMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVI 42
M++ + + ++L+ + A Y L+D N+G V+
Sbjct: 1 MKRKAASLTLKYVAVGSLLAVALTGAARADDVNLKTMIPGVPQIDAEAYILIDYNSGKVL 60
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STF 96
AE+ D NPASLTK+MT+YV+ ++ K +T+ K+A
Sbjct: 61 AEHNADERRNPASLTKMMTSYVIGQAMRAGKFGENDVVTVGKDAWATGNPVFQGSSLMFL 120
Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
K G +++ N ++ + + S ND VA+A+ + ++ FV MNN K LGL THF H
Sbjct: 121 KPGDQVSVGNLIRGINLVSGNDACVAMADYVAGSQDAFVGLMNNYVKALGLQNTHFETVH 180
Query: 157 GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADG 215
G+ G +++ARDMA++ + D P ++ K + N N T + DG
Sbjct: 181 GLDAPGQFSSARDMALIGQALIRDVPHEYAIYKEKEFTYNNIRQMNRNGLLWDTSMNVDG 240
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
+KTG T ++G+N+VASA +G+ LI+ ++G R S LL+ GF +
Sbjct: 241 IKTGHTASAGYNLVASATEGNMRLISAVMGGRTFKGRETESKKLLTWGFRFFETVSPLKA 300
Query: 276 I----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ + + + ++V T + + + K ++
Sbjct: 301 GREFASEPVWFGDTDRAQLGVDKDVYLTIPRGRMKDLKASYVLNSNELDAPLAKDQVVGT 360
Query: 332 K 332
Sbjct: 361 I 361
>gi|257453878|ref|ZP_05619156.1| D-alanyl-D-alanine carboxypeptidase DacC [Enhydrobacter aerosaccus
SK60]
gi|257448805|gb|EEV23770.1| D-alanyl-D-alanine carboxypeptidase DacC [Enhydrobacter aerosaccus
SK60]
Length = 395
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 91/341 (26%), Positives = 154/341 (45%), Gaps = 9/341 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
V + + + L+D +TG V+A+ P+ PASLTK+MT+Y+
Sbjct: 21 FVAASFFATTVQANAAIQQPELDNSAFILIDYDTGTVLAQKNAAQPFPPASLTKMMTSYI 80
Query: 65 VFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ L PI ++ A S +T + + LK +I++S ND +
Sbjct: 81 IEQRLLSGALKENEPILMTPEAWCKGSSEESCMYVPVNTTAPVIDMLKGIIIQSGNDASK 140
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+A+ + +E F MN +K +G++ THFMNA G+ Q GH +A D+A L+ I +
Sbjct: 141 AMAQHIGGSETTFADLMNEEAKKIGMTHTHFMNATGMPQEGHQASAEDLAKLAQAIIKNS 200
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+Y + K G N N + T DG+KTG T +G+ +VAS+ +GD LI+
Sbjct: 201 KKYYPIYSQKQFTYNGITQGNRNALLFTDPTVDGLKTGHTDEAGYCLVASSKRGDMRLIS 260
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISEE 295
VI+G R S +LL+ GF N + K + +F + N V + +
Sbjct: 261 VIMGTKSAQERADQSRNLLNWGFSNFATKIAAPAQKSYGSVPVNFGAVDKVNVVSKGNLQ 320
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
V + + +T + D ++ +++ L + K
Sbjct: 321 VLVPKLDQEKISTVVNLPADVKAPLAQGQEVGKLVAMLNGK 361
>gi|255320588|ref|ZP_05361766.1| D-alanyl-D-alanine carboxypeptidase DacC [Acinetobacter
radioresistens SK82]
gi|262378578|ref|ZP_06071735.1| penicillin-binding protein 6 [Acinetobacter radioresistens SH164]
gi|255302350|gb|EET81589.1| D-alanyl-D-alanine carboxypeptidase DacC [Acinetobacter
radioresistens SK82]
gi|262299863|gb|EEY87775.1| penicillin-binding protein 6 [Acinetobacter radioresistens SH164]
Length = 382
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 86/339 (25%), Positives = 146/339 (43%), Gaps = 12/339 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S LS Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 7 IAALLLLPSFSYAATVLSSPPELNNKSYVLMDYETGQILAAKNENEKLAPASMTKMMTSY 66
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + + ++++A S T ++ L+ +IV+S ND +
Sbjct: 67 IIEQKLLKGELTENEQVRMNESAWCRGSSSESCMYVPLNGTASVLEMLRGIIVQSGNDAS 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K +G+ THF+N+ G+ GH +TA+DMAIL+ I D
Sbjct: 127 KAVAEHVAGNEGTFAHMMNQEAKRIGMVNTHFVNSTGMPAEGHVSTAKDMAILAQHIIKD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +GF + S+ +G LI
Sbjct: 187 SSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGFCLTTSSKRGPMRLI 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD------RKKINYIIKDFYQQNLSNEVPNISE 294
+VI GA R + LL G+ N ++ + F Q+ +
Sbjct: 247 SVIFGAPTMQERATQTRDLLGWGYANFETANVQPAKQVLAKSKVWFGQEYEVEVGLAENF 306
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
V + + TQ+ + +K ++ +
Sbjct: 307 NVTMPKGQADKIKTQLVV---QPKLNAPLQKGQVVGKLV 342
>gi|204929188|ref|ZP_03220331.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|204321732|gb|EDZ06931.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|322613672|gb|EFY10612.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620243|gb|EFY17112.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322623289|gb|EFY20130.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322630494|gb|EFY27263.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632829|gb|EFY29574.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322638838|gb|EFY35532.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640341|gb|EFY37000.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647153|gb|EFY43652.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322648980|gb|EFY45423.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322653886|gb|EFY50210.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660993|gb|EFY57222.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663066|gb|EFY59273.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668511|gb|EFY64666.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673354|gb|EFY69457.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322679140|gb|EFY75194.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322683235|gb|EFY79250.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322685895|gb|EFY81885.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323195182|gb|EFZ80363.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198750|gb|EFZ83850.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202394|gb|EFZ87437.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323209221|gb|EFZ94157.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323209796|gb|EFZ94719.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323216122|gb|EGA00852.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220678|gb|EGA05125.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323223727|gb|EGA08034.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231333|gb|EGA15447.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232575|gb|EGA16672.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240982|gb|EGA25022.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245599|gb|EGA29594.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247629|gb|EGA31578.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251071|gb|EGA34945.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323254840|gb|EGA38635.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263363|gb|EGA46897.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266318|gb|EGA49807.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271462|gb|EGA54884.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 390
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 86/349 (24%), Positives = 151/349 (43%), Gaps = 21/349 (6%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +G+N
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGYN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + + LL G N + ++ K +
Sbjct: 245 LIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGLQNFATVQILHSGKKVGSERIWYG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEKITLL 329
+ ++ + + + K K+ E+ +++ +
Sbjct: 305 DKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQQVGEI 353
>gi|296134797|ref|YP_003642039.1| Beta-lactamase [Thiomonas intermedia K12]
gi|295794919|gb|ADG29709.1| Beta-lactamase [Thiomonas intermedia K12]
Length = 413
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 85/323 (26%), Positives = 144/323 (44%), Gaps = 10/323 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ ++D +G ++AE+ PASLTKLMTAY+ F LKE L
Sbjct: 54 ATVPPPKLDARSWLVVDLTSGQILAEHDAHAQEAPASLTKLMTAYLTFKALKEGTIKLNQ 113
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T SK A + S +++++ L +IV+S ND A+ +A+++ + FV M
Sbjct: 114 MVTESKEAWQTGGSRMFIDPRVPVSVNDLLLGMIVQSGNDAAMTLAQTVGGSVSAFVAMM 173
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQIKGLEIKG 197
N ++ GL THFM+ G+ GH+TTA D++I++ I DFP YF++K
Sbjct: 174 NRQAQQWGLKGTHFMDPTGLPDPGHHTTAYDLSIIATHIIRDFPADYARYFKVKEFTYNH 233
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILGALDRNTRN 253
PN + T DGMKTG+T +G+ ++ SA + G + L+ V++G R
Sbjct: 234 ITQPNRVSLLFTDPSVDGMKTGYTSEAGYCMITSAQRQFPNGPRRLLTVVMGTPTERARG 293
Query: 254 KVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
+ S LL+ + N D + ++ + S V + + + Q
Sbjct: 294 EESQVLLNWAYQNFDDIVLASPGKPVLTAPVWKGVDNKVELGSSVPVVISVPRGMGKDLQ 353
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
K + + + +
Sbjct: 354 TKVVR-PDPLVAPLQAGQRVGQL 375
>gi|91223153|ref|ZP_01258419.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
gi|91191966|gb|EAS78229.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
Length = 385
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 88/347 (25%), Positives = 153/347 (44%), Gaps = 13/347 (3%)
Query: 1 MR----QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M+ ++ ++ + + + Y L+D +G +IAE PASL
Sbjct: 1 MKVSLARWTIVTCLISVPTFAVVTPNPPQLQAKGYVLMDFQSGAIIAEYNGRAGLAPASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TKLMTAYVV +K + +T+S+NA S K +++ N ++ +I+
Sbjct: 61 TKLMTAYVVGQEIKAGRLKWDDVVTVSENAWSAKFPGSSKMFIKPKDEISVANLMRGVII 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+AE + +E+ FV MN ++ LGL T+F+N+HG+ G T+ DMA L
Sbjct: 121 QSGNDACVALAEHVAGSERGFVALMNGWAEKLGLQDTYFVNSHGLDSDGIQTSPTDMARL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASA 232
I +D P + K + N N + DG KTG+T +G+++V+SA
Sbjct: 181 MQSIISDVPDVYALYSEKVFKWNDITQYNRNKLLWDNSIDVDGGKTGYTSNAGYSLVSSA 240
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNE 288
+G LI+V++G + R S +LLS GF ++ + ++ N +
Sbjct: 241 KEGRMRLISVVMGTPSKQARISQSKNLLSYGFRFYDTKQVAKQGQVESKVRVWKGNANQV 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ T + + E + + + K
Sbjct: 301 EAIFAKDAYLTLPRSMTAGLDKSVVLN-EPLIAPIAQGDEIGKVVWK 346
>gi|297539773|ref|YP_003675542.1| beta-lactamase [Methylotenera sp. 301]
gi|297259120|gb|ADI30965.1| Beta-lactamase [Methylotenera sp. 301]
Length = 390
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 90/338 (26%), Positives = 151/338 (44%), Gaps = 10/338 (2%)
Query: 4 FLVIIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
FL+ +S++ ++ + Y L D N+ +VIA PASLTK+
Sbjct: 16 FLLSTTALAISSVAQAESAQIAPPPNLAVKAYLLKDFNSNYVIASQNSSMRIEPASLTKI 75
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTAY+ F LK LT + +S+ A + S + +T+D L I++S ND
Sbjct: 76 MTAYLAFKALKNGHLSLTQTLPVSELAWKVEGSKMFIEPNKPVTVDELLHGTIIQSGNDS 135
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
++A+AE + TE +F MN + LG+ TH+MNA G+ H+TTA D+A L+ +
Sbjct: 136 SIALAEGIAGTEPQFADMMNKEAARLGMKNTHYMNATGLPDAQHFTTADDLATLAAALIR 195
Query: 180 DFPQYMHY-FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
DFP + +K PN N + DGMKTG T +G+ ++ASA +
Sbjct: 196 DFPDQYQRLYSVKEYTYNKITQPNRNRLLWADPNVDGMKTGHTETAGYCLIASAKRDGTR 255
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
I+V+LGA + R S LL+ GF + ++ + ++
Sbjct: 256 RISVVLGAPTDSARASESQKLLNYGFQYFDSKLVYKQGQSINQLKVWKGTENQLASTVAN 315
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ T + N + + + +K ++ +
Sbjct: 316 DLFVTVPKGDYANVKAVMSSTQP-LIAPIKKGQVIGSV 352
>gi|189351640|ref|YP_001947268.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC
17616]
gi|189335662|dbj|BAG44732.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC
17616]
Length = 410
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 85/338 (25%), Positives = 150/338 (44%), Gaps = 15/338 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D + V+A D PASLTKLMTAY+VF L +KK
Sbjct: 39 ATFMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKK 98
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 99 ISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 158
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN+ ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K
Sbjct: 159 AQFVTMMNDEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEK 218
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244
+ + N N + DG+KTG T A+GF +++SA + + L+AV++
Sbjct: 219 EFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLISSAKRPIPGASDAQRRLVAVMM 278
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCT 298
G + R + S +L+ G+ + Y+ + ++ + V
Sbjct: 279 GEPKESDRTQDSMKMLNYGYSAFDAVRLFKGGQAISTPRLYKGKENTVQVGVASDQWVTV 338
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ + +++ +K K
Sbjct: 339 PRGLGDKVKPEVDVNAPLIAPLAQGQQVGTVKVVADGK 376
>gi|256752045|ref|ZP_05492913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
ethanolicus CCSD1]
gi|256749055|gb|EEU62091.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
ethanolicus CCSD1]
Length = 379
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 87/352 (24%), Positives = 154/352 (43%), Gaps = 25/352 (7%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++F++ I + +S++ + + ++D TG V+ E P AS TK
Sbjct: 1 MKKFILYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNPHEKLPMASTTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT V L +T+SK A+ S+ G + +++ L L++ S ND
Sbjct: 61 IMTLLVALEK-----GNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGND 115
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176
A AIAE + + + F++ MN ++ +G THF+ G+ HYTTA D+A+++
Sbjct: 116 AATAIAEHIGGSVENFIEIMNQKAREIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 175
Query: 177 IKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+P++ K I + N N + + GADG+KTGFT +G +V+
Sbjct: 176 -AFRYPKFAEIVSTKEKTIPWEGREWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 234
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK------KINYIIKDFYQQN 284
SA + + IAV+L + + S +L F K I I + ++N
Sbjct: 235 SASREGRRFIAVVLNSP---PMWEDSMKILDYAFSKYKPYKVLEKGELIKKIKVEGGKEN 291
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ V + + E + N + K ++ EKI + KI ++
Sbjct: 292 SVSVVSERECIIPALEDEKQDVNLEFHFPKSVKAPVEKGEKIGYVTVKIGEE 343
>gi|323152399|gb|EFZ38687.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli EPECa14]
Length = 390
Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats.
Identities = 90/340 (26%), Positives = 150/340 (44%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRTIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
D P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHDEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|317491387|ref|ZP_07949823.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920934|gb|EFV42257.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 402
Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 82/347 (23%), Positives = 145/347 (41%), Gaps = 15/347 (4%)
Query: 1 MRQFLV----IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++ + + ++ A Y L+D ++G ++ E D +PASL
Sbjct: 10 IKKITLGAGLTLMAIPMTYADEAAPAAPQINAKAYVLMDYDSGKILTEANADERLDPASL 69
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKL 110
TK+M +YV+ +K K + + K+A K G + + K
Sbjct: 70 TKIMASYVIGQSIKAGKITPNDMVVVGKDAWATGNPILRGSSLMFLKPGDRVPVSELNKG 129
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
++++S ND ++A+A+ + ++ FV MN + GL T F HG+ G Y++ARDM
Sbjct: 130 VVIQSGNDASIALADYVAGSQDAFVSLMNKYVEAWGLKNTSFKTVHGLDSEGQYSSARDM 189
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIV 229
A++S R+ D P + K + N N + L DG+KTG+T +G N+V
Sbjct: 190 ALISQRLIADVPDEYALHKEKEFTFNKIRQVNRNRLLWDSSLNVDGIKTGYTSGAGHNLV 249
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNL 285
+SA G LI+V+LGA R + S LL+ GF I + + +
Sbjct: 250 SSATDGPMRLISVVLGAPTDRIRFEESKKLLTWGFRFYETVTPIKVGQAFTTEKVWFGDK 309
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
S +++ T N + ++ K ++
Sbjct: 310 SEVELGVNKNAAVTIPRGQLKNLKASFTLNQPQLEAPLAKGQVVGTI 356
>gi|157161502|ref|YP_001458820.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli HS]
gi|157067182|gb|ABV06437.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli HS]
Length = 388
Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 94/351 (26%), Positives = 156/351 (44%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPQIQAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T ++G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSSAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAVI+GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|15832066|ref|NP_310839.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
Sakai]
gi|168764096|ref|ZP_02789103.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4501]
gi|168777102|ref|ZP_02802109.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4196]
gi|168784009|ref|ZP_02809016.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4076]
gi|188025184|ref|ZP_02997384.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4113]
gi|189402596|ref|ZP_03006773.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4401]
gi|189403423|ref|ZP_03007084.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4486]
gi|189406210|ref|ZP_03008107.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC508]
gi|208810754|ref|ZP_03252630.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4206]
gi|208816718|ref|ZP_03257838.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4045]
gi|208818499|ref|ZP_03258819.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4042]
gi|209397891|ref|YP_002271183.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4115]
gi|209447203|ref|YP_002274288.1| penicillin-binding protein 6b [Stx2-converting phage 1717]
gi|217329693|ref|ZP_03445772.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. TW14588]
gi|261256444|ref|ZP_05948977.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
FRIK966]
gi|291283247|ref|YP_003500065.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O55:H7
str. CB9615]
gi|293410371|ref|ZP_06653947.1| dacD [Escherichia coli B354]
gi|13362280|dbj|BAB36235.1| penicillin binding protein 6b [Escherichia coli O157:H7 str. Sakai]
gi|187767572|gb|EDU31416.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4196]
gi|188014404|gb|EDU52526.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4113]
gi|188998746|gb|EDU67732.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4076]
gi|189354737|gb|EDU73156.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4401]
gi|189360801|gb|EDU79220.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4486]
gi|189365830|gb|EDU84246.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4501]
gi|189375987|gb|EDU94403.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC508]
gi|208725270|gb|EDZ74977.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4206]
gi|208731061|gb|EDZ79750.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4045]
gi|208738622|gb|EDZ86304.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4042]
gi|209159291|gb|ACI36724.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4115]
gi|209361182|gb|ACI43175.1| penicillin-binding protein 6b [Escherichia coli O157:H7]
gi|209748254|gb|ACI72434.1| penicillin binding protein 6b [Escherichia coli]
gi|209748256|gb|ACI72435.1| penicillin binding protein 6b [Escherichia coli]
gi|209748258|gb|ACI72436.1| penicillin binding protein 6b [Escherichia coli]
gi|217317461|gb|EEC25890.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. TW14588]
gi|284922011|emb|CBG35089.1| penicillin-binding protein 6B [Escherichia coli 042]
gi|290763120|gb|ADD57081.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O55:H7
str. CB9615]
gi|291470839|gb|EFF13323.1| dacD [Escherichia coli B354]
Length = 390
Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 149/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|218699400|ref|YP_002407029.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli IAI39]
gi|218369386|emb|CAR17143.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli IAI39]
Length = 388
Score = 203 bits (515), Expect = 3e-50, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 153/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLTIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|15802489|ref|NP_288515.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7
EDL933]
gi|12516188|gb|AAG57069.1|AE005426_11 penicillin binding protein 6b [Escherichia coli O157:H7 str.
EDL933]
Length = 390
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 149/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FIFNLSXGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|26248385|ref|NP_754425.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli CFT073]
gi|237704469|ref|ZP_04534950.1| penicillin-binding protein 6B [Escherichia sp. 3_2_53FAA]
gi|26108789|gb|AAN80992.1|AE016762_245 Penicillin-binding protein 6B precursor [Escherichia coli CFT073]
gi|226900835|gb|EEH87094.1| penicillin-binding protein 6B [Escherichia sp. 3_2_53FAA]
Length = 390
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 149/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|315180861|gb|ADT87775.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii NCTC 11218]
Length = 391
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 92/354 (25%), Positives = 151/354 (42%), Gaps = 20/354 (5%)
Query: 1 MRQFL--------VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + + ++ + + A + L+D ++G V+AE
Sbjct: 1 MKKSILNSVLASSIALSATFSTAALASPVVIPDAPQIAAKGFVLIDYHSGKVLAEKEMHT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ LK +TIS+NA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQELKRGNITNDDDVTISRNAWAKNFPDSSKMFIEVGTTVKVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +IV+S ND VA+AE + +E FV MN + LG+ THF N HG+ Y+T
Sbjct: 121 LNQGIIVQSGNDACVAMAEHIAGSEDAFVDLMNAWADTLGMQETHFANVHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
DMA+L + D P + + G N N + DG+KTG T +G
Sbjct: 181 PYDMALLGQALIRDVPDEYKIYSQQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFY 281
+++V+SA +G LIAV++G D N R S LLS GF + +
Sbjct: 241 YSLVSSATEGKMRLIAVVMGTKDMNARKSESKKLLSYGFRFFETVAPHKAGETFVDEKIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ S + E+ T + +KE +K ++ +
Sbjct: 301 MGDKSTVALGVDEDTYVTLPRGQAKDLTASFVLEKE-LKAPIKKGDVVGKLYYQ 353
>gi|332278836|ref|ZP_08391249.1| penicillin-binding protein 6B [Shigella sp. D9]
gi|332101188|gb|EGJ04534.1| penicillin-binding protein 6B [Shigella sp. D9]
Length = 390
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 149/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|89902561|ref|YP_525032.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens
T118]
gi|89347298|gb|ABD71501.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Rhodoferax ferrireducens T118]
Length = 394
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 103/356 (28%), Positives = 167/356 (46%), Gaps = 26/356 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ L+ +A AM ++ Y L D +AE D P ASLTKLM
Sbjct: 2 MKKLLLTLAAAMCLSVSAQTPQPPEIAARSYLLFDITANQFLAEKDIDSPVEQASLTKLM 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAY+VF L+ KK L + +S++A + P S + +++ LK +IV+S ND
Sbjct: 62 TAYIVFDALRSKKIDLKQMLPVSEHAWKMPGSRMFIDPKMKVPVEDLLKGMIVQSGNDAT 121
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+AE + T ++FVQ MN +K LG+ +T++ N G+ + GH TTARD++IL+ R+ D
Sbjct: 122 MALAEGVGGTVERFVQLMNEQAKALGMKSTNYKNPEGLTEAGHTTTARDLSILATRLMRD 181
Query: 181 FPQYMHYFQIKGLEIKGKKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-- 235
FP Y+ Y+ IK G N N + DG+KTG T A+G+ ++A+A +
Sbjct: 182 FPDYVAYYAIKQYRYPGTPAANGSNRNLLLFRDPTVDGLKTGHTDAAGYCLIATAKRDFV 241
Query: 236 ---------------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYII 277
+ L++++LGA N+R S LL+ G+ K ++
Sbjct: 242 GLGAPAAAGSPGATGSRRLLSIVLGATSENSRANESQKLLNWGYTAFEPVKLFDANQAVV 301
Query: 278 KDFYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + V E V TQ+ + + F +++ LK
Sbjct: 302 SPAVWKGKAAVVKLGRPEAIVVAVPAGTSGKIKTQVLRSDPLVAPFTKGQQVATLK 357
>gi|311068945|ref|YP_003973868.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
gi|310869462|gb|ADP32937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
Length = 389
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 88/318 (27%), Positives = 142/318 (44%), Gaps = 8/318 (2%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ L++ +TG V+ PAS+TK+MT ++ L + K ++ + S+ A
Sbjct: 36 EAKSAVLIERDTGKVLYNKNSHERLAPASMTKIMTMLLIMEALDKGKIKMSDKVRTSEYA 95
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ S + G MT+ LK + + S ND +VA+AE + +E++FVQ MN +K LG
Sbjct: 96 ASMGGSQIFLEPGEEMTVKEMLKGIAIASGNDSSVAMAEYISGSEEEFVQKMNKKAKELG 155
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----PQYMHYFQIKGLEIKGKKYPN 202
L T F N G+ + GHY++A DMA++S + + ++ K N
Sbjct: 156 LKDTTFKNPTGLPEKGHYSSAYDMAMMSKELLKYDKITAFTGTYEDYLREDTDKKFWLVN 215
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
TN + + G DG+KTG+T + + + ASA +G+ IAV+ GA RN +L
Sbjct: 216 TNRLIKFYPGVDGVKTGYTGEAKYCLTASAKKGNMRAIAVVFGASTPKDRNAQVTKMLDY 275
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKES 318
F + + I SE + K+ + KE K KE
Sbjct: 276 AFSQYETHPMYKRNETVAKAKVKKGKQKTIELSTSEPISLLTKKGEDTKHVKKEIKMKEQ 335
Query: 319 HFIDFEKITLLKNKITKK 336
+K +L I KK
Sbjct: 336 ITAPIKKGDVLGTLILKK 353
>gi|170683658|ref|YP_001743130.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SMS-3-5]
gi|331647659|ref|ZP_08348751.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli M605]
gi|331663510|ref|ZP_08364420.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli TA143]
gi|170521376|gb|ACB19554.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5]
gi|281179111|dbj|BAI55441.1| penicillin binding protein 6 [Escherichia coli SE15]
gi|323161927|gb|EFZ47801.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli E128010]
gi|323187689|gb|EFZ72990.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli RN587/1]
gi|331043383|gb|EGI15521.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli M605]
gi|331059309|gb|EGI31286.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli TA143]
Length = 390
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 149/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|330828593|ref|YP_004391545.1| Penicillin-binding protein [Aeromonas veronii B565]
gi|328803729|gb|AEB48928.1| Penicillin-binding protein [Aeromonas veronii B565]
Length = 398
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 95/356 (26%), Positives = 153/356 (42%), Gaps = 27/356 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFL----------------SIAETNKLPYYTLLDTNTGHVIAE 44
M +F + +A L ++ A + L+D +G V+AE
Sbjct: 1 MSKFARSVLLASLISVTAQANTPVPTPTPNAMPMVVPAAPEISAKAHILIDYYSGQVLAE 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGST 101
+ PASLTK+MT+Y++ L + T +TIS+NA S + G
Sbjct: 61 QNAEERLPPASLTKMMTSYIIGQELLKGNIKRTDMVTISQNAWSKNYSDSSKMFIEVGKQ 120
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+++D+ K +I++S ND VA+AE L + F MN+ + LG++ +HFMN HG+
Sbjct: 121 VSVDDLNKGIIIQSGNDACVAMAEFLAGSTDSFASLMNSWAAKLGMNDSHFMNPHGLDAE 180
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGF 220
GHY+TA DMA L + D P+ + K G N N L DG+KTG
Sbjct: 181 GHYSTAHDMARLGQALIRDLPEEYKIYSQKSFVFNGITQHNRNRLLWDQSLQVDGIKTGH 240
Query: 221 TCASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
G+N+V+SA LIAV+LGA +R S LL+ GF +
Sbjct: 241 VSQVGYNLVSSATNNEGMRLIAVVLGASSEASRAAESKKLLTYGFRFFQSLTPYKAGTEL 300
Query: 280 FYQQNLSNEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
Q+ + P + V T+ + N + + ++ +++ +
Sbjct: 301 VTQKIWMGDKPEVKLGVDKDVSVLVTRGQGNNLKADFQLDSELKAPLAKGQRVGTV 356
>gi|332307130|ref|YP_004434981.1| Beta-lactamase [Glaciecola agarilytica 4H-3-7+YE-5]
gi|332174459|gb|AEE23713.1| Beta-lactamase [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 390
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 97/327 (29%), Positives = 151/327 (46%), Gaps = 10/327 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++ + A T + L+D TG VIAE D PASLTK+MT+YV+ +
Sbjct: 23 AASAAVIIPDAPTVSAKGFILVDYQTGKVIAEQNADIQIPPASLTKMMTSYVIGKEIANG 82
Query: 73 KAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
T +TIS+NA S + G+ +++ + + +IV+S ND VA+AE +
Sbjct: 83 NIKDTDMVTISENAWAKNFPDSSKMFIEVGTQISVADLNRGIIVQSGNDACVAMAEHIAG 142
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+E F MN ++ LG+++T+F+N+HG+ HYTT RDMA L+ + TD P +
Sbjct: 143 SEDAFASMMNLHAEKLGMTSTNFVNSHGLQDADHYTTPRDMATLARALITDVPNEYKVYS 202
Query: 190 IKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
K K N N L DG+KTG T +G+++V+SA QGD LIAV++GA
Sbjct: 203 EKEFTYNNIKQYNRNGLLWDKSLNVDGIKTGHTSDAGYSLVSSATQGDMRLIAVVMGADS 262
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKE 302
R + LL GF + + IS++ + + +
Sbjct: 263 ERARKVENKKLLKYGFRFYETITPYQAGESFVSHRIFMGDKETVDLGISQDTPITIPRGQ 322
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLL 329
N + K E+ E + L
Sbjct: 323 SKNLEANFELDKKLEAPLAKGEVVGKL 349
>gi|292898840|ref|YP_003538209.1| penicillin-binding protein 5 [Erwinia amylovora ATCC 49946]
gi|291198688|emb|CBJ45797.1| penicillin-binding protein 5 [Erwinia amylovora ATCC 49946]
Length = 404
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 149/353 (42%), Gaps = 21/353 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPF---------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ + +A+ N+ + + Y L+D N+G V+AE D
Sbjct: 10 LKRLTAGMLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYILIDYNSGKVLAEKNADARR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ K+A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAIKAGKIHQDDRVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++++S ND VA+A+ + ++ FV MNN K LGL THF HG+ G Y+
Sbjct: 130 QLTRGIVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P + K + N N T L DG+KTG T ++
Sbjct: 190 SARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTESA 249
Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KD 279
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAGKEFASEP 309
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N + ++V T + + +K ++
Sbjct: 310 VWFGNSDRVQLGVEKDVYLTIPRGRMKDLKASYTLSNTELHAPLQKNQVIGTI 362
>gi|307267584|ref|ZP_07549057.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306917391|gb|EFN47692.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 427
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 88/352 (25%), Positives = 155/352 (44%), Gaps = 25/352 (7%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++F++ I + +S++ + + ++D TG V+ E AS TK
Sbjct: 49 MKKFILYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNSHEKLPMASTTK 108
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT V L +T+SK A+ S+ G + +++ L L++ S ND
Sbjct: 109 IMTLLVALEK-----GNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGND 163
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176
A AIAE + + + FV+ MN +K +G THF+ G+ HYTTA D+A+++
Sbjct: 164 AATAIAEHIGGSVESFVEIMNQKAKEIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 223
Query: 177 IKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+P++ K I + N N + + GADG+KTGFT +G +V+
Sbjct: 224 -AFRYPKFTEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 282
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK------KINYIIKDFYQQN 284
SA + + IAV+L + + S +L F K I + + ++N
Sbjct: 283 SATREGRRFIAVVLNSP---PMWEDSMKILDYAFSKYKPYKVLEKGELIKKVKVEGGKEN 339
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ V + + ++E N N + K ++ EKI + KI ++
Sbjct: 340 TVSVVSEKACVIPALEEEKQNVNLEFYLPKSVKAPVEKGEKIGYVTVKIGEE 391
>gi|238028745|ref|YP_002912976.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
glumae BGR1]
gi|237877939|gb|ACR30272.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
glumae BGR1]
Length = 433
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 86/330 (26%), Positives = 150/330 (45%), Gaps = 15/330 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 64 TYLPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALASKKI 123
Query: 75 MLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 124 SMEQIVTPSEAVRRVGTDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 183
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN ++ LG+ THF + +G+ HYTTA D+A+LS R+ DFP Y + F +K
Sbjct: 184 QFVNMMNAEAQKLGMKGTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPDYYNIFSVKD 243
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------DQSLIAVILG 245
+ PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 244 FTYNHIRQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRPLPGSADVSRRLVTVMMG 303
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKIN---YIIKDFYQQNLSNEVPNISEE---VCTT 299
+ R + S +L+ G+ + + + N VP ++ V
Sbjct: 304 EPRESDRVQDSLKMLNYGYSAFDTVRLYKGGQAVETPRVYKGRVNSVPVGVQKDQFVTLP 363
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ Q+ + + +++ +
Sbjct: 364 KGAGDKLKPQVTLNTPLIAPLAEGQQVGTV 393
>gi|269966371|ref|ZP_06180456.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
gi|269828958|gb|EEZ83207.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
Length = 390
Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats.
Identities = 96/333 (28%), Positives = 142/333 (42%), Gaps = 9/333 (2%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
++ + A Y L+D +TG V+ E NPASLTKLMTAYV +
Sbjct: 21 SLAYAAPSVVPNAPELSSRGYVLMDFHTGKVLVERDAHKRLNPASLTKLMTAYVAGQEIN 80
Query: 71 EKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L + IS+NA S + ++++L + + LIV+S ND +VAIAE +
Sbjct: 81 TGNITLNDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLIVQSGNDASVAIAEHV 140
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E FV MN+ + L LS T F N HG+ G Y+T D+A L I D P
Sbjct: 141 AGSESGFVSLMNSWAAKLELSNTAFTNPHGLDSDGLYSTPYDIAKLGQAIIRDLPDIYPL 200
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ G N N + DGMKTG+T +G+++ SA QGD LIAV++GA
Sbjct: 201 YSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSATQGDMRLIAVVMGA 260
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKE 302
N R S LLS GF + + ++ +V T +
Sbjct: 261 KSENVRESESKQLLSYGFRFYDTVMPTEAGAELAKARVWMGEKDELTVGVANDVYLTLPK 320
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
N Q + + + ++ + K
Sbjct: 321 GDLKNLQAEV-EYNGDLVAPISEQQVVGKVLYK 352
>gi|121535761|ref|ZP_01667563.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
carboxydivorans Nor1]
gi|121305660|gb|EAX46600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
carboxydivorans Nor1]
Length = 390
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 80/341 (23%), Positives = 130/341 (38%), Gaps = 14/341 (4%)
Query: 5 LVIIAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
LV L P A L+D N G V+ E P PAS+T
Sbjct: 12 LVCFMFFQLMASLPIAWAAPLRTPAQLETTAESAVLMDAN-GAVLWEKEPHKRLPPASVT 70
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT + +++ + T + S++A S + G MT+ + + V SAN
Sbjct: 71 KVMTLLLAVEAVEQGRIKPTDLVYTSEHAWRQGGSQIWLEPGEAMTVQEMMIAVAVVSAN 130
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D AVA+ E + +E+ V+ MN + +LGL THF+N +G+ HY +A D A+L
Sbjct: 131 DAAVALMEHIYGSEQAAVEAMNKRAASLGLQNTHFVNVNGLPAQDHYMSAYDTALLVKEA 190
Query: 178 KTDFPQYMHY-FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+ L NTN + + GADG+KTG+T + + +A +
Sbjct: 191 VRHPLYMELCGIKEYWLREGKNWLVNTNKLLWWYKGADGLKTGWTEEAKYCFAGTAKRDG 250
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNI 292
LIAV+ + + + S L+ GF N + +
Sbjct: 251 LRLIAVVFATPEPRSHLRESMKLMDWGFANFAAVPVAEKEAVVGRIKVNKGMEREVQLVV 310
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ ++ + N N Q K + + I
Sbjct: 311 ANDLTLVVPKGQNKNLQKKVVAE-PQVNAPIIQGQKYGELI 350
>gi|74312552|ref|YP_310971.1| D-alanyl-D-alanine carboxypeptidase [Shigella sonnei Ss046]
gi|73856029|gb|AAZ88736.1| penicillin binding protein 6b [Shigella sonnei Ss046]
Length = 390
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 88/340 (25%), Positives = 148/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+ S I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVFSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|86139111|ref|ZP_01057682.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
MED193]
gi|85824342|gb|EAQ44546.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
MED193]
Length = 554
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 104/334 (31%), Positives = 161/334 (48%), Gaps = 2/334 (0%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R L I+ + + + ++D TG V+ D +PASLTK+MT
Sbjct: 21 RSVLWIMGVVLFLGMALIPPTQAQAAPYAAVVVDARTGEVLHSRNADARLHPASLTKMMT 80
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
Y+ F ++ + L + ISKNA+ PPS K G + ++ VKSAND A
Sbjct: 81 LYIAFEAVRNGEISLDQKVRISKNAAAEPPSKLGLKSGQRIAFRYLIRASAVKSANDAAT 140
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
AI E++ +E F + M T+K LG+S T F NAHG+ + GH +TARDM L I D+
Sbjct: 141 AIGEAISGSEAAFARRMTRTAKALGMSRTTFKNAHGLTEAGHLSTARDMTKLGRHILYDY 200
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P+Y H F ++ K PNTN + ++ GADG+KTG+T A+G N+VASA +GD+ +I
Sbjct: 201 PEYYHLFSRTSIDAGVKTVPNTNRRLLASYKGADGIKTGYTRAAGSNLVASAKRGDERII 260
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN-LSNEVPNISEEVCTT 299
A + G +RN LL +GF R ++ + Y N ++
Sbjct: 261 ATVFGGKSSTSRNARIVELLDLGFRRAPSRARVRAPGRPAYVGNQGIGGSTQVAAATNGG 320
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ + N +K + + I ++ +
Sbjct: 321 AGKTVRVNGLVKTSLRPLARPIPVVDPDVIAEAV 354
>gi|269961547|ref|ZP_06175909.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3]
gi|269833588|gb|EEZ87685.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi 1DA3]
Length = 392
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 94/341 (27%), Positives = 149/341 (43%), Gaps = 12/341 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + + F + A Y L+D N+G V+AE + +PASLTK+MT+
Sbjct: 15 VALSATIAQSAFASPVVVPDAPQIAAKGYVLMDYNSGKVLAEKEMNTKLSPASLTKMMTS 74
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV+ L +TISKNA S + G+T+ + + + +I++S ND
Sbjct: 75 YVIGQELARGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDA 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VA+AE + +E FV MN + LG+ THF N HG+ Y+T DMA+L +
Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWANTLGMKNTHFANVHGLDNPNLYSTPYDMALLGKALIR 194
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P + K G N N + DG+KTG T +G+++V+SA +G
Sbjct: 195 DVPDEYRIYSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE 294
L+AV++G D N R S LLS GF + + N + +
Sbjct: 255 LVAVVMGTKDANARKSESKKLLSYGFRFFETVAPHKAGETFVEEKVWMGNKDTVALGLDQ 314
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T N + +KE +K ++ +
Sbjct: 315 DTYVTLPRGEAKNLKASFVLEKE-LEAPIKKGDVVGKLYYQ 354
>gi|226951361|ref|ZP_03821825.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
[Acinetobacter sp. ATCC 27244]
gi|226837883|gb|EEH70266.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
[Acinetobacter sp. ATCC 27244]
Length = 397
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 92/338 (27%), Positives = 145/338 (42%), Gaps = 14/338 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
S LS Y L+D TG ++A D PAS+TK+MT++++ L +
Sbjct: 31 FSYAATVLSAPPELNNKSYVLMDYETGQILAAKNEDEKLAPASMTKMMTSFIIEQKLLQG 90
Query: 73 KAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K + ++++A S T T+ L+ +IV+S ND + A+AE +
Sbjct: 91 KLTEDEHVRMNESAWCRGSSAESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHIAG 150
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
E F MN +K LG++ T+F+N+ G+ GHY+TA+DMAIL+ I D +Y +
Sbjct: 151 NEGTFAHMMNQEAKRLGMTNTNFVNSTGMPAEGHYSTAKDMAILAQHIIKDSSKYYPIYS 210
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K G K N N + T DG+KTG T +GF + S+ +G LI+VI G
Sbjct: 211 EKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTSEAGFCLTTSSKRGPMRLISVIFGTPSM 270
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE--EVCTTQKEI 303
N R + +LL+ GF N + ++E V + +
Sbjct: 271 NERANQTRALLAWGFANFETANVQPANQAIAKAKVWFGKEDEVQIGLAENFNVTMPKGQA 330
Query: 304 INYNTQMKEAKDKESHFIDFEKITLL-----KNKITKK 336
TQ+ + + I L I +K
Sbjct: 331 DKIKTQLVIQPQLNAPLAQGQVIGKLVASLDGKVIAEK 368
>gi|50084413|ref|YP_045923.1| D-ala-D-ala-carboxypeptidase [Acinetobacter sp. ADP1]
gi|49530389|emb|CAG68101.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
(precursor) [Acinetobacter sp. ADP1]
Length = 382
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 87/339 (25%), Positives = 147/339 (43%), Gaps = 12/339 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S L+ Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 7 LAALVLLPTFSYAATVLTTPPELNNKSYVLMDYETGQILASKNENEHLAPASMTKMMTSY 66
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + + ++++A S T T+ L+ +IV+S ND +
Sbjct: 67 IIEQKLLKGELTEGEQVRMNESAWCRGSSSESCMYVPLNGTATVLEMLRGIIVQSGNDAS 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K LG+ THFMN+ G+ GHY++A+DMAIL+ I D
Sbjct: 127 KAMAEHVAGNEGTFAHMMNQEAKRLGMVNTHFMNSTGLPAEGHYSSAKDMAILAQHIIKD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + S+ +G LI
Sbjct: 187 SSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTSEAGYCLTTSSKRGPMRLI 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE-- 294
+VI G N R + +LL+ GF N + + ++E
Sbjct: 247 SVIFGTTSVNERANQTRTLLAWGFSNFETVNVQPANQVLAKAKVWFGKENEVQIGLAENF 306
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
V + + TQ+ + +K ++ +
Sbjct: 307 NVTMPKGQADKIKTQLVV---QPKLNAPLQKGQVVGKLV 342
>gi|209919474|ref|YP_002293558.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE11]
gi|209912733|dbj|BAG77807.1| penicillin binding protein 6 [Escherichia coli SE11]
Length = 390
Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 149/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|312973749|ref|ZP_07787921.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1827-70]
gi|310332344|gb|EFP99579.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1827-70]
Length = 390
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 150/340 (44%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L+ THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLNDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|168229376|ref|ZP_02654434.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|194472812|ref|ZP_03078796.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194459176|gb|EDX48015.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|205335852|gb|EDZ22616.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
Length = 390
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 151/349 (43%), Gaps = 21/349 (6%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + + LL G N + ++ K +
Sbjct: 245 LIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIWYG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEKITLL 329
+ ++ + + + K K+ E+ +++ +
Sbjct: 305 DKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQQVGEI 353
>gi|313650258|gb|EFS14670.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2a str.
2457T]
gi|332759746|gb|EGJ90049.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri
4343-70]
gi|332760581|gb|EGJ90870.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri
2747-71]
gi|332763049|gb|EGJ93294.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-671]
gi|332768006|gb|EGJ98192.1| penicillin-binding protein 6 [Shigella flexneri 2930-71]
gi|333007039|gb|EGK26534.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-218]
gi|333020974|gb|EGK40232.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-304]
Length = 321
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 93/295 (31%), Positives = 142/295 (48%), Gaps = 7/295 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
LI+V+LGA R S LL+ GF I Q+ + ++
Sbjct: 257 LISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKIEVN 311
>gi|297180033|gb|ADI16258.1| d-alanyl-d-alanine carboxypeptidase [uncultured bacterium
HF0010_16H03]
Length = 384
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 91/335 (27%), Positives = 154/335 (45%), Gaps = 6/335 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ L+ + ++ L F+ A L Y L++ NT VIAE PAS+TK+M
Sbjct: 1 MKKLLIPLLLSNLIYAQSFVPDAPELNLKSYILIEPNTNTVIAEFNSSSEIEPASMTKIM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T+YVV + L + IS+ A S + G +++ N LK +I++S ND +
Sbjct: 61 TSYVVADQIANGLISLEDQVLISEKAWRMGGSKMFIEAGKKVSISNLLKGIIIQSGNDAS 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAI+E TE+ FV MN + +LG++ T F N+ G+ H+++A+D+A L+
Sbjct: 121 VAISEYAGGTERGFVDLMNAYADSLGMNNTIFQNSTGLPDENHFSSAKDLATLTSNFIIK 180
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP ++ K K N N + +DG+KTG T A+G+ +V SA +GD LI
Sbjct: 181 FPDIYSLYKEKQFTFNNIKQLNRNKLLWRDESSDGVKTGHTEAAGYCLVGSAKRGDMRLI 240
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------E 294
V+ G+ N R S LL GF +K +N + + ++
Sbjct: 241 TVVAGSDTDNNRFLASQRLLEYGFRFFATQKVLNANEEYKKIKIWGGVEQSLGIGVLEDV 300
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + + + ++ + I +
Sbjct: 301 SITLPRTSFKDLTVNYNYSNNIQAPIYAGQTIGTI 335
>gi|260868661|ref|YP_003235063.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str.
11128]
gi|257765017|dbj|BAI36512.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str.
11128]
Length = 388
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 92/351 (26%), Positives = 153/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFY 281
FN++ASAI G + LIAV++GA R + + LL G N T + + + +
Sbjct: 241 FNLIASAIDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K + + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLNGKELTAPISAHQRVGEI 351
>gi|297181495|gb|ADI17682.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma
proteobacterium HF0130_23I23]
Length = 380
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 92/339 (27%), Positives = 153/339 (45%), Gaps = 9/339 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + I + N+ + + Y L + NT V+A D P PASLTKLM
Sbjct: 1 MNKIKFIFLTFLSINLSAAIPNPPDLGVGSYILYEPNTKKVLASFNADAPVEPASLTKLM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T+YVV ++KE LT IS NA + P S ++ + + + +K +I++S ND +
Sbjct: 61 TSYVVADYIKEDFIDLTDTPKISINAWKTPGSRMFIRESTKVPVSELIKGMIIQSGNDAS 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + +E+ F MN ++ LG+ T F NA G+ + T+A D+A+L+ + +
Sbjct: 121 VALAEHVAGSEENFSYLMNEYARELGMENTSFNNASGLPDPLNVTSANDLAVLTGELIKN 180
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL---GADGMKTGFTCASGFNIVASAIQGDQ 237
FP + ++ K G N N + DG+KTG+T ++G+ +V SA++
Sbjct: 181 FPDHYRHYSQKSFTYAGIAQKNRNQLLWRDNTSITFDGVKTGYTESAGYCLVGSAVKDGM 240
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNIS 293
L+AV+LG+ D R ++L+ GF K N IS
Sbjct: 241 RLVAVVLGSEDDK-RFNDVSNLMVYGFRYFKTEKLFEKNEPLKSVQVIAGKKDNVNVGIS 299
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
E+V T + + + + D + +
Sbjct: 300 EDVVLTLQRDQRDSLRYEVTADT-TVLAPVNSMDKAGTV 337
>gi|23097466|ref|NP_690932.1| serine-type D-Ala-D-Ala carboxypeptidase [Oceanobacillus iheyensis
HTE831]
gi|22775689|dbj|BAC11967.1| serine-type D-Ala-D-Ala carboxypeptidase [Oceanobacillus iheyensis
HTE831]
Length = 447
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 74/355 (20%), Positives = 142/355 (40%), Gaps = 34/355 (9%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+++ +ML+ + + L+D TG V+ PD PAS+TK+MT Y+V
Sbjct: 16 ILVFTSMLTATTTVQANELDLESESAILVDGETGKVLYAKNPDVALPPASMTKMMTEYLV 75
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTF----KKGSTMTLDNALKLLIVKSANDIAV 121
+ ++ T IS +NS ++ T+ + + + S N +
Sbjct: 76 WEAIENGDITWDTTTEISDYPYSISANNSFSGVGLRQQQEYTVKELYEAMAINSDNATTI 135
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTA 167
A+AE + +E +FV+ MN + +GL F+N+ G+ + +A
Sbjct: 136 ALAELIAGSESEFVKMMNEKGEEMGLQEFKFVNSTGLDNEDLGDNYPEGTNPNDTNLLSA 195
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---------VGTFLGADGMKT 218
R A+L + + D+ + + I + G+ N N+ + G DG+KT
Sbjct: 196 RSAALLGYHLVNDYEEALEISSIPQTDFGGQTINNWNYMLPHEGDNLASYYYEGVDGLKT 255
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
GFT +G++ +A + Q LI V++ R + +A LL GF N + + + +
Sbjct: 256 GFTDLAGYSFTGTAERNGQRLITVVMKTGSETERFEETAKLLDYGFSNFENTELFSAGYQ 315
Query: 279 -------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
+ ++ + V K ++ D++ D E +
Sbjct: 316 EEGHETIPVAKGKEDQVSISLQDSVSVPIKADEKDLYHLEYNIDQDRLNEDGELV 370
>gi|293415304|ref|ZP_06657947.1| dacD [Escherichia coli B185]
gi|291432952|gb|EFF05931.1| dacD [Escherichia coli B185]
gi|323168855|gb|EFZ54535.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella sonnei 53G]
Length = 390
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 149/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|315181925|gb|ADT88838.1| D-alanyl-D-alanine carboxypeptidase [Vibrio furnissii NCTC 11218]
Length = 390
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 96/335 (28%), Positives = 148/335 (44%), Gaps = 7/335 (2%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ A + Y L+D NTG V+ E+ + NPASLTKLMT+YV
Sbjct: 17 LLSATSFAAPIVVPNPPQLSAKGYVLMDYNTGQVLVEHNANEKMNPASLTKLMTSYVAGQ 76
Query: 68 FLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+K T +TIS+ A S + G+++ + + + LIV+S ND +VAIA
Sbjct: 77 EMKRGNIKPTDQVTISQKAWAKNFPDSSKMFIEVGTSVNMMDLYRGLIVQSGNDASVAIA 136
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + +E FV MN+ ++ LGL+ T F N HG+ G YTT D+A L+ I D P+
Sbjct: 137 EHVAGSENAFVDLMNSWAQRLGLNNTAFTNPHGLDSDGLYTTPYDIAKLAQAIIRDLPEI 196
Query: 185 MHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ G N N + DGMKTGFT +G+++V SA G+ LI+ +
Sbjct: 197 YPIYSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGFTSGAGYSLVTSATNGNMRLISAV 256
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+GA +R S LLS GF + E +++ V T
Sbjct: 257 MGANSMKSRESDSKQLLSYGFRFFDTVAPHKQGETIENARVWMGERDDLAIGVAQTTYLT 316
Query: 304 INYNTQMKEAKDKE---SHFIDFEKITLLKNKITK 335
+N + + E ++ ++ I +
Sbjct: 317 VNKGEMSQLSGLIELDRDLKAPIQQGDMVGKVIYQ 351
>gi|253773059|ref|YP_003035890.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161999|ref|YP_003045107.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B str.
REL606]
gi|297519533|ref|ZP_06937919.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli OP50]
gi|242377656|emb|CAQ32416.1| DD-carboxypeptidase, penicillin-binding protein 6b [Escherichia
coli BL21(DE3)]
gi|253324103|gb|ACT28705.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973900|gb|ACT39571.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli B str. REL606]
gi|253978094|gb|ACT43764.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli BL21(DE3)]
Length = 388
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 153/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + + + +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K + + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLNGKELTAPISAHQRVGEI 351
>gi|206559102|ref|YP_002229862.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia
J2315]
gi|198035139|emb|CAR51013.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
precursor) [Burkholderia cenocepacia J2315]
Length = 436
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 87/342 (25%), Positives = 149/342 (43%), Gaps = 14/342 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ P + L+D + V+A D PASLTKLMTAY+VF
Sbjct: 61 FTGAPATYMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEA 120
Query: 69 LKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L +KK + +T S S + +++ + + +I++S ND A+A+AE
Sbjct: 121 LDKKKISMEQIVTPSDAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAEL 180
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E +FV MN+ + LG+ THF + +G+ HYTTA D+A LS + DFPQY
Sbjct: 181 VGGSEGQFVTLMNDEAARLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYG 240
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLI 240
F K + + N N + DG+KTG T A+GF ++ASA + G + L+
Sbjct: 241 IFSEKEFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLIASAKRAIPGVDGQRRLV 300
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE- 295
+V++G N R + S +L+ G+ + Y+ + + +
Sbjct: 301 SVMMGEQKENDRTQDSMKMLNYGYSAFDSVRLFKGGQAISTPRIYKGKDNTVQVGVKGDQ 360
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ T++ + + +++ +K K
Sbjct: 361 WATVPRGLGDKVKTEVDVNAPLIAPLAEGQQVGTVKIVADGK 402
>gi|148255490|ref|YP_001240075.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium
sp. BTAi1]
gi|146407663|gb|ABQ36169.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium
sp. BTAi1]
Length = 384
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 88/313 (28%), Positives = 136/313 (43%), Gaps = 9/313 (2%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
P L++ N+G V+ E D P+S+ KLMTA VVF+ +KE L IS+NA
Sbjct: 22 DAPTAILMEANSGSVLFEKNADELRAPSSMMKLMTAEVVFNAVKEGTIKLNDEYRISENA 81
Query: 87 SEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV-QHMNN 140
S S +++ + L I++S ND +A+AE + EK F +M
Sbjct: 82 WRRGGAPSGGSTMFAALNSKVSVSDLLHGAIIQSGNDACIALAEGMAGNEKIFAADYMTK 141
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
++ LGL+ + F N++G+ G+ T R++A+L+ I DFP++ F K +
Sbjct: 142 RARELGLTKSTFANSNGLPDPGNKMTVRELAMLARHIILDFPEFYKIFGEKEFTWNKIRQ 201
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N + GADG+KTGFT G+ +V SA+Q LI V+ G D R + +L
Sbjct: 202 QNRNPLLNAMEGADGLKTGFTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKML 261
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE--- 317
GF N R Y + E ++ K ++ N K
Sbjct: 262 EWGFRNFETRTLFAADQPIGYAKVFGGESRSVKLSSPVPVKVMVQKNGGDKLIARIVYSG 321
Query: 318 SHFIDFEKITLLK 330
E +
Sbjct: 322 PVRAPVEPGQKVG 334
>gi|170691583|ref|ZP_02882748.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia graminis
C4D1M]
gi|170143788|gb|EDT11951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia graminis
C4D1M]
Length = 409
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 87/340 (25%), Positives = 156/340 (45%), Gaps = 15/340 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
V++ ++++ + L+D + V+A PD PASLTKLMTAY+V
Sbjct: 30 VVLPATLVASTAFAQVPPPAVNARSWVLVDATSNQVLASGNPDERVEPASLTKLMTAYLV 89
Query: 66 FSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
F L+ KK + +T + S + +T+ + + +IV+S ND A+A+
Sbjct: 90 FEALQTKKITMDQTVTPGEAVRRVRTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIAL 149
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+A+LS R+ DFP
Sbjct: 150 AELVGGSESQFVNMMNTEAQRLGMKHTHFADVNGMPDPQHYTTAGDLAVLSARLIRDFPD 209
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GD 236
Y + F +K K PN N + DG+KTG T A+G+ ++ASA +
Sbjct: 210 YYNIFSVKDFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPGTPDAS 269
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNI 292
+ L++V++G + R + S +L+ G+ + Y+ +
Sbjct: 270 RRLVSVMMGETKEHDRVQDSLKMLNYGYSAYDTARLYKANQVVGTPRVYKGAQDTVQIGV 329
Query: 293 SEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + Q+++ + + +++ K
Sbjct: 330 KSDQYITVPKGMADKVKPQIEQIDPLIAPIANGQQVGTAK 369
>gi|322513157|ref|ZP_08066289.1| D-alanyl-D-alanine carboxypeptidase DacA [Actinobacillus ureae ATCC
25976]
gi|322121089|gb|EFX92912.1| D-alanyl-D-alanine carboxypeptidase DacA [Actinobacillus ureae ATCC
25976]
Length = 392
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 95/352 (26%), Positives = 158/352 (44%), Gaps = 18/352 (5%)
Query: 1 MRQFLV----IIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L + A+A + A Y L+D N+G+V+A PD
Sbjct: 1 MKKTLFKSVGLCALAFSQFAVADANVDFGISAPQLNAQSYILMDYNSGNVLASLNPDQRQ 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNAL 108
PASLTK+MT+YVV LK+ K + +T+++N+ + +++++ +
Sbjct: 61 YPASLTKMMTSYVVGDALKQGKVKNSDMVTVTENSWAQKFPGSSLMFLDLNTQVSVEDLM 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LI+ S ND AVA+AE +++ F+ MN ++ GL THF HG+ + Y++AR
Sbjct: 121 RGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFAQQFGLKNTHFTTVHGLDEPNQYSSAR 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-WAVGTFLGADGMKTGFTCASGF 226
DMAI+ I D P+ + K + KK PN N + DGMKTG T +G+
Sbjct: 181 DMAIIGAHIIRDQPEEYKIYAEKEFKYNIKKPQPNRNGLLWDKTMNVDGMKTGHTSQAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQ 282
N+VASA + LI+V++G R S LL GF N K + + Y
Sbjct: 241 NLVASATNSNTRLISVVMGVGTYKGREVESKKLLQWGFANFETIKSLPAGQAVSEQSVYY 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
++ T + + + ++++ K ++ I
Sbjct: 301 GEADKVQLGSIQDSFVTVPKGKASELKARYELERKNLEAPLVKGQVIGKVIY 352
>gi|308186017|ref|YP_003930148.1| D-alanine carboxypeptidase [Pantoea vagans C9-1]
gi|308056527|gb|ADO08699.1| D-alanine carboxypeptidase [Pantoea vagans C9-1]
Length = 420
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 149/352 (42%), Gaps = 20/352 (5%)
Query: 1 MRQFLV--IIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ V +IA ++ + Y L+D N+G V+AE D
Sbjct: 27 LKRLTVGSLIAFSLSHAAIADDVNLKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARR 86
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ +A K G + +
Sbjct: 87 DPASLTKMMTSYVIGQAVKAGKIHQDDMVTVGPDAWATGNPVFKGSSLMFLKPGDRVPVS 146
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++++S ND VA+A+ + ++ FV MNN K +GL THF HG+ G Y+
Sbjct: 147 QLTRGIVLQSGNDACVAMADYVAGSQDAFVNLMNNYVKAIGLQNTHFGTVHGLDAEGQYS 206
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P+ ++ K + N N T L DG+KTG T ++
Sbjct: 207 SARDMALIGQALIRDVPEEYAVYKEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTNSA 266
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 267 GYNLVASATEGQMRLISAVMGGHTFKGRETESKKLLTWGFRFFETVAPLKAGKEFASEPV 326
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++ T + + +K ++ +
Sbjct: 327 WFGDNDRVQLGVEKDAYLTIPRGRMKDLKASYVLTNTELHAPLKKNQVVGSI 378
>gi|242238535|ref|YP_002986716.1| D-alanyl-D-alanine carboxypeptidase fraction A [Dickeya dadantii
Ech703]
gi|242130592|gb|ACS84894.1| Beta-lactamase [Dickeya dadantii Ech703]
Length = 403
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 88/351 (25%), Positives = 147/351 (41%), Gaps = 20/351 (5%)
Query: 2 RQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
++ ++ + + + F + Y L+D N+G V+AE D N
Sbjct: 11 KRIVLGTLLVLGVSAFSHAEDINLKTMIPAVPDIDAEAYILIDYNSGKVLAEKNADVRRN 70
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS------EYPPSNSTFKKGSTMTLDN 106
PASLTK+MT+YV+ +K K +TI K+A S K G + +
Sbjct: 71 PASLTKMMTSYVIGQAIKAGKINPNDIVTIGKDAWATGNPDFQGSSLMFLKPGDRVPVHM 130
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
K +I++S ND VA+A+ + ++ F+ MN K+LGL T F HG+ G Y++
Sbjct: 131 LNKGIILQSGNDACVAMADYVAGSQDAFISLMNGYVKSLGLQNTQFKTVHGLDAEGQYSS 190
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
ARDMA++ + D P ++ K + N N + L DG+KTG T ++G
Sbjct: 191 ARDMALIGQALIRDVPNEYATYKEKEFTFNNIRQMNRNGLLWDSSLSVDGIKTGHTASAG 250
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+VASA +G LI+ +LG R S LL+ GF + + +
Sbjct: 251 YNLVASATEGQMRLISAVLGGRTFKGRESESKKLLTWGFRFFETVAPLKADKEFASEPVW 310
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
N + ++ T + + + K ++
Sbjct: 311 FGNADRVSLGVEKDAYITIPRGRMKDLKASYVLNNTELHAPLAKNQVVGTI 361
>gi|294650880|ref|ZP_06728227.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter
haemolyticus ATCC 19194]
gi|292823298|gb|EFF82154.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter
haemolyticus ATCC 19194]
Length = 397
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 92/338 (27%), Positives = 145/338 (42%), Gaps = 14/338 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
S LS Y L+D TG ++A D PAS+TK+MT++++ L +
Sbjct: 31 FSYAATVLSAPPELNNKSYVLMDYETGQILAAKNEDEKLAPASMTKMMTSFIIEQKLLQG 90
Query: 73 KAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K + ++++A S T T+ L+ +IV+S ND + A+AE +
Sbjct: 91 KLTEDEHVRMNESAWCRGSSAESCMYVPLNGTATVLEMLRGIIVQSGNDASKAMAEHIAG 150
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
E F MN +K LG++ T+F+N+ G+ GHY+TA+DMAIL+ I D +Y +
Sbjct: 151 NEGTFAHMMNQEAKRLGMTNTNFVNSTGMPAEGHYSTAKDMAILAQHIIKDSSKYYPIYS 210
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K G K N N + T DG+KTG T +GF + S+ +G LI+VI G
Sbjct: 211 EKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTSEAGFCLTTSSKRGPMRLISVIFGTPSM 270
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE--EVCTTQKEI 303
N R + +LL+ GF N + ++E V + +
Sbjct: 271 NERANQTRALLAWGFANFETANVQPANQAIAKAKVWFGKEDEVQIGLAENFNVTMPKGQA 330
Query: 304 INYNTQMKEAKDKESHFIDFEKITLL-----KNKITKK 336
TQ+ + + I L I +K
Sbjct: 331 DKIKTQLVVQPQLNAPLAQGQVIGKLVASLDGKVIAEK 368
>gi|148975180|ref|ZP_01812104.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3]
gi|145965104|gb|EDK30354.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3]
Length = 417
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 98/343 (28%), Positives = 155/343 (45%), Gaps = 10/343 (2%)
Query: 2 RQFLVIIAMAMLSNIFPF-LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
R ++ M + F Y L+D +G +IAE PASLTKLM
Sbjct: 27 RALACLLFAGMSVSSFAVVTPNPPELAAKGYVLMDFQSGSIIAEQNSRAILAPASLTKLM 86
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
TAYVV +K + +++S+NA S + G +++ N +K +IV+S N
Sbjct: 87 TAYVVGQEIKAGRLTWQDKVSVSENAWSAKFSESSKMFIQPGDEISVSNLMKGVIVQSGN 146
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D +VA+AE + +E+ FV MN +K+LGL T+F+NAHG+ G T+ DMAIL I
Sbjct: 147 DASVALAEHIAGSEQAFVSLMNGWAKSLGLQDTNFVNAHGLDGEGIQTSPLDMAILMKSI 206
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
D P +Q + N N + DG KTG+T +G+++V+SA +G
Sbjct: 207 IRDVPDVYALYQERRFTWNKITQYNRNKLLWDKSINVDGGKTGYTENAGYSLVSSATEGK 266
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNI 292
LI+V++G R S +LLS GF ++ + ++ N I
Sbjct: 267 MRLISVVMGTTSPQARTSASKNLLSYGFRFYDTKQVMQEDRIESQVRVWKGNTEQVGAKI 326
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+E+ T + ++ K E E+ + + K
Sbjct: 327 AEDAYLTMPRGL-VDSLQKSVVMTEPLLAPIEQGAEVGQVVWK 368
>gi|71279808|ref|YP_268450.1| D-alanyl-D-alanine carboxypeptidase [Colwellia psychrerythraea 34H]
gi|71145548|gb|AAZ26021.1| D-alanyl-D-alanine carboxypeptidase [Colwellia psychrerythraea 34H]
Length = 399
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 90/340 (26%), Positives = 145/340 (42%), Gaps = 9/340 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F I + ++ + A + L+D TG +IAE D PASLTK+MT+Y
Sbjct: 25 FSTAIVLIPAAHAITIIPDAPQINAKGFILIDYTTGKIIAEENADTQLAPASLTKIMTSY 84
Query: 64 VVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L+ T + IS+ A S + G+ + + + +IV S ND
Sbjct: 85 IIGKELENGNIKNTDKVMISEKAWAKKFPDSSKMFIEVGTEVPVSLLNQGIIVASGNDAC 144
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + +E F MN ++ LG+S++ F N+HG+ H TT RDMA L+ + +
Sbjct: 145 VAMAEHIAGSESAFADLMNAHAEQLGMSSSFFENSHGLDSTSHMTTPRDMATLAIALIRE 204
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+ ++ K K N N L DGMKTG T +G+++V SA +GD L
Sbjct: 205 VPEEYAIYKQKSFTYNNIKQYNRNGLLWDKSLNVDGMKTGHTSNAGYSLVTSATKGDMRL 264
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE 295
+ V++G R S LL+ GF K + + N I +
Sbjct: 265 VTVVMGTASERARKVESKKLLNYGFRFFETITPYKAGEKFIANRVWMGDKENVDLGIISD 324
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T N + +++ K T++ +
Sbjct: 325 TPITIPRGQRKNLKANFELNQQ-LTAPLAKGTVVGTLFLQ 363
>gi|197264724|ref|ZP_03164798.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197242979|gb|EDY25599.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
Length = 390
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 151/349 (43%), Gaps = 21/349 (6%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVHDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLRDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + + LL G N + ++ K +
Sbjct: 245 LIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIWYG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEKITLL 329
+ ++ + + + K K+ E+ +++ +
Sbjct: 305 DKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQQVGEI 353
>gi|28897493|ref|NP_797098.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
2210633]
gi|260876429|ref|ZP_05888784.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus AN-5034]
gi|28805705|dbj|BAC58982.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus RIMD
2210633]
gi|308091621|gb|EFO41316.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus AN-5034]
gi|328472498|gb|EGF43361.1| D-alanyl-D-alanine carboxypeptidase [Vibrio parahaemolyticus 10329]
Length = 392
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 92/341 (26%), Positives = 147/341 (43%), Gaps = 12/341 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + F + A Y L+D ++G V+AE + +PASLTK+MT+
Sbjct: 15 VALSATFAQSAFASPVVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTS 74
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV+ L +TISKNA S + G+T+ + + + +I++S ND
Sbjct: 75 YVIGQELARGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLNRGIIIQSGNDA 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VA+AE + +E FV MN + LG+ +HF N HG+ Y+T DMA+L +
Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWANTLGMKNSHFANVHGLDNSELYSTPYDMALLGKALIR 194
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P + K G N N + DG+KTG T +G+++V+SA +G
Sbjct: 195 DVPDEYRVYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE 294
L+AV++G D N R S LLS GF + + N + +
Sbjct: 255 LVAVVMGTKDANARKSESKKLLSYGFRFFETVAPHKAGETFVEEKVWMGNKDTVALGLDQ 314
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T N + +KE K ++ +
Sbjct: 315 DTYVTLPRGEAKNLKASFVLEKE-LEAPINKGDVVGKLYYQ 354
>gi|290476200|ref|YP_003469100.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Xenorhabdus bovienii SS-2004]
gi|289175533|emb|CBJ82336.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Xenorhabdus bovienii SS-2004]
Length = 402
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 85/351 (24%), Positives = 147/351 (41%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
++ + IA+A ++ F Y L+D N+G ++AE D +
Sbjct: 10 IKNATLGIALATSASAFANTDDNFKTMIPGVPQTDAEAYILIDYNSGKILAEKNSDIRRD 69
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTK+MT+YV+ +K K +T+ K+A K G +++
Sbjct: 70 PASLTKMMTSYVIGQAIKSGKIGPNDTVTVGKDAWATGNPVFKGSSLMFLKPGDQVSVAM 129
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ + ++S ND VA+A+ + ++ FV MN +NLGL THF HG+ G Y++
Sbjct: 130 LSRGINLQSGNDACVAMADYVAGSQDAFVNLMNKYVQNLGLQNTHFETVHGLDAAGQYSS 189
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A DMA++ + D P ++ K PN N L DG+KTG T +G
Sbjct: 190 AHDMALIGQALIRDVPDEYAIYKEKEFTYNNIHQPNRNGLLWDKSLNVDGIKTGHTSGAG 249
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+V+SA + + LI+V++G+ R S LL+ GF + + +
Sbjct: 250 YNLVSSATESNMRLISVVMGSPTFKGRETDSKKLLTWGFRFFETVSPLQVGKEFASEPVW 309
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + V T + + + K ++
Sbjct: 310 FGDADKVQLGVDKNVYLTIPRGRLKDLKASYVLNNTELHAPLAKDQVVGTI 360
>gi|91792211|ref|YP_561862.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella denitrificans
OS217]
gi|91714213|gb|ABE54139.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Shewanella denitrificans OS217]
Length = 428
Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats.
Identities = 95/318 (29%), Positives = 146/318 (45%), Gaps = 10/318 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ A + Y L+D ++G VIAE NPASLTK+MT+YV+ LK L
Sbjct: 67 IPDAPSVAAKAYVLMDYHSGQVIAEGNSYESLNPASLTKMMTSYVIGHELKVGNISLEDE 126
Query: 80 ITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+TI+KNA S + G T+ +D+ + +I++S ND VA+AE + TE FV
Sbjct: 127 VTITKNAWSKNFPDSSKMFIEVGKTVKVDDLNRGIIIQSGNDACVAMAEHIAGTEGAFVD 186
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN+ SK LG++ ++F N+HG+ H TTA DMA+L + D PQ + K
Sbjct: 187 LMNSWSKQLGMNDSYFENSHGLDSENHKTTAYDMALLGAALIRDVPQEYRVYAEKSFTYN 246
Query: 197 GKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
G K N N + DG+KTG T +G+N+VASA LI+V+LG + R
Sbjct: 247 GIKQYNRNGLLWDNSLNVDGIKTGHTSGAGYNLVASATSDGMRLISVVLGTSSESARKAE 306
Query: 256 SASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKEIINYNTQ 309
S LL+ GF + + ++ + + + + +
Sbjct: 307 SKKLLNYGFRFFETISPYKAGDTFTNHAIWYGDKDTVNLGVTTDTAITLGRGKAKDLQAN 366
Query: 310 MKEAKDKESHFIDFEKIT 327
+ K + E +
Sbjct: 367 FELTKQLTAPLAKGEVVG 384
>gi|254511152|ref|ZP_05123219.1| D-alanyl-D-alanine carboxypeptidase family protein
[Rhodobacteraceae bacterium KLH11]
gi|221534863|gb|EEE37851.1| D-alanyl-D-alanine carboxypeptidase family protein
[Rhodobacteraceae bacterium KLH11]
Length = 448
Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 104/294 (35%), Positives = 151/294 (51%), Gaps = 6/294 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M FL+ ++ L+ ++D TG V+ D +PASLTK+M
Sbjct: 1 MGLFLIAFLWLLVFAPLKGLAAP-----YAAMVIDARTGEVLHSRNADTRLHPASLTKMM 55
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F ++ + L TP+ I+K AS PPS + G T+ ++ VKSAND A
Sbjct: 56 TLYIAFEAVRNGEITLDTPVRITKKASSEPPSKLGLRTGQTIQFRYLIRAAAVKSANDAA 115
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
AI ++ +E F + M T+K +G+S T F NAHG+ + GH +TARDM L + D
Sbjct: 116 TAIGIAISGSEAAFARRMTRTAKAMGMSRTTFKNAHGLTETGHLSTARDMTTLGRHLLYD 175
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+PQY + F + K PNTN + + GADG+KTG+T A+GFN+VASA + D+ +
Sbjct: 176 YPQYYNLFSRQSTHAGIKTVPNTNRRLLAAYKGADGIKTGYTRAAGFNLVASAKRKDERI 235
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
IA + G +RN A LL MGF R I + Y N V ++
Sbjct: 236 IATVFGGKSGASRNARVAELLDMGFRRAPSRAPIRKPARPAYAGNAGLGVTQVA 289
>gi|148977058|ref|ZP_01813704.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium
SWAT-3]
gi|145963718|gb|EDK28979.1| putative D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium
SWAT-3]
Length = 373
Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 89/326 (27%), Positives = 139/326 (42%), Gaps = 9/326 (2%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + Y L+D N+G V+ E NPASLTKLMT+YV +K
Sbjct: 6 AIAAPSIVPAPPSLGAKGYVLIDFNSGDVLVEKNAHTKLNPASLTKLMTSYVAGQEMKRG 65
Query: 73 KAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ IS+NA S + + + + + + LI++S ND +VAIAE +
Sbjct: 66 NISADDKVRISENAWAKNFPDSSKMFIEVNTDVAMMDLYRGLIIQSGNDASVAIAEQVAG 125
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
++ FV MN+ + +L L THF NAHG+ Y+T D+A+L I D P +
Sbjct: 126 SQDAFVDLMNSWATSLKLENTHFANAHGLDAEDLYSTPYDIALLGRAIIKDLPDVYGLYS 185
Query: 190 IKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ G N N L DGMKTG+T +G+++ +SA QG+ LIAV++GA
Sbjct: 186 ERSFSYNGITQHNRNGLLRDRSLTVDGMKTGYTSGAGYSLASSATQGEMRLIAVVMGASS 245
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEII 304
+R S LLS GF + + + ++E+ T +
Sbjct: 246 VKSRESDSKQLLSYGFRFFDTLNVHQGGDQVAEEKVWFGSQDTLKLGVAEDTFITLPKSD 305
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLK 330
+ + E + L
Sbjct: 306 SKKLTASIELNSE-LKAPIAEGQTLG 330
>gi|156973523|ref|YP_001444430.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116]
gi|156525117|gb|ABU70203.1| hypothetical protein VIBHAR_01214 [Vibrio harveyi ATCC BAA-1116]
Length = 392
Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats.
Identities = 94/341 (27%), Positives = 149/341 (43%), Gaps = 12/341 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + + F + A Y L+D N+G V+AE + +PASLTK+MT+
Sbjct: 15 VALSATIAQSAFASPVVVPDAPQIAAKGYVLMDYNSGKVLAEKEMNTKLSPASLTKMMTS 74
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV+ L +TISKNA S + G+T+ + + + +I++S ND
Sbjct: 75 YVIGQELARGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDA 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VA+AE + +E FV MN + LG+ THF N HG+ Y+T DMA+L +
Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWANTLGMKNTHFANVHGLDNPNLYSTPYDMALLGKALIR 194
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P + K G N N + DG+KTG T +G+++V+SA +G
Sbjct: 195 DVPDEYRIYSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE 294
L+AV++G D N R S LLS GF + + N + +
Sbjct: 255 LVAVVMGTKDANARKSESKKLLSYGFRFFETVAPHKAGETFVEEKVWMGNKDTVALGLDQ 314
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T N + +KE +K ++ +
Sbjct: 315 DTYVTLPRGEAKNLKASFVLEKE-LEAPIKKGDVVGKLYYQ 354
>gi|182678513|ref|YP_001832659.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182634396|gb|ACB95170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 394
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 89/348 (25%), Positives = 144/348 (41%), Gaps = 16/348 (4%)
Query: 2 RQFLVI--IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
R+ L+I + L+ + P L++ TG V+ E PD P PAS K+
Sbjct: 6 RRILLIPFLLSGFLAGPIAARAQGIDTSAPNVILIEAETGGVLFEKNPDAPVIPASTAKI 65
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY-----PPSNSTFKKGSTMTLDNALKLLIVK 114
MTA +VF L+E + L IS+ A S+ S + +++ ++ L++
Sbjct: 66 MTAELVFQNLREGRIHLDDTFLISETAWRQGGAPSRGSSMYAALNSHVRVEDLIRGLVID 125
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND A+A+AE L +E F M ++ LGL + F NA G TARDMA L+
Sbjct: 126 SGNDAAIALAEGLAGSEGAFATLMTKRARELGLDHSVFTNAWGRGDPDQLVTARDMARLA 185
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T +P Y YF K + N N + GADG+KTG ASG+ +V SA+Q
Sbjct: 186 AHVITTYPDYYKYFGEKEFTWNKIRQTNRNPLLTMDFGADGLKTGNIDASGYGLVGSAVQ 245
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-- 292
+ LI + GA + R + L GF + T + + ++
Sbjct: 246 NGERLILALYGAKNAKERADEARRLFLWGFRSFTTKTVYKANETIGTARVFGGAKTDVDL 305
Query: 293 ----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ + ++ E+ + I ++
Sbjct: 306 VAHRDIKLLIPHLGGEKFTGKIVYT---GPLPAPVEEGQQVGQLIIRR 350
>gi|292487601|ref|YP_003530473.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora
CFBP1430]
gi|291553020|emb|CBA20065.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora
CFBP1430]
Length = 411
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 149/353 (42%), Gaps = 21/353 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPF---------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ + +A+ N+ + + Y L+D N+G V+AE D
Sbjct: 17 LKRLTAGMLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYILIDYNSGKVLAEKNADARR 76
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ K+A K G + +
Sbjct: 77 DPASLTKMMTSYVIGQAIKAGKIHQDDRVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 136
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++++S ND VA+A+ + ++ FV MNN K LGL THF HG+ G Y+
Sbjct: 137 QLTRGIVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYS 196
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P + K + N N T L DG+KTG T ++
Sbjct: 197 SARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTESA 256
Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KD 279
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 257 GYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAGKEFASEP 316
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N + ++V T + + +K ++
Sbjct: 317 VWFGNSDRVQLGVEKDVYLTIPRGRMKDLKASYTLSNTELHAPLQKNQVIGTI 369
>gi|253687572|ref|YP_003016762.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|261822396|ref|YP_003260502.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium
wasabiae WPP163]
gi|251754150|gb|ACT12226.1| Beta-lactamase [Pectobacterium carotovorum subsp. carotovorum PC1]
gi|261606409|gb|ACX88895.1| Beta-lactamase [Pectobacterium wasabiae WPP163]
Length = 403
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 90/344 (26%), Positives = 149/344 (43%), Gaps = 15/344 (4%)
Query: 4 FLVIIAMAML----SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
LVI A + N+ + Y L+D N+G V+AE D +PASLTK+
Sbjct: 18 LLVISASSFAYAEDINLKTMIPGVPQIDAESYILIDYNSGKVLAEMNADTRRDPASLTKM 77
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIV 113
MT+YV+ +K K +T+ K+A K G + + + +I+
Sbjct: 78 MTSYVIGQAIKSGKISPNDIVTVGKDAWATGNPTFQGSSLMFLKPGDRVPVSQLNRGIIL 137
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+A+ + ++ FV MN K LGL T+F HG+ G +++ARDMA++
Sbjct: 138 QSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLQNTNFETVHGLDAPGQFSSARDMALI 197
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA 232
+ D P+ ++ K + PN N + L DG+KTG T ++GFN+VASA
Sbjct: 198 GQALIRDVPEEYATYKEKEFTFNNIRQPNRNGLLWDSSLNVDGIKTGHTSSAGFNLVASA 257
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNE 288
+G LI+ +LG + R S LL+ GF + + + +
Sbjct: 258 TEGQMRLISAVLGGRNAKGRESESKKLLTWGFRFFETVAPLKAGKEFASEPVWFGDSDRV 317
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++ T + + D K ++ +
Sbjct: 318 ALGVEKDAYLTIPRGRMKDLKASYVLDNTELHAPLAKNQVVGSI 361
>gi|310642625|ref|YP_003947383.1| d-ala-d-ala carboxypeptidase dacf; serine peptidase; merops family
s11 [Paenibacillus polymyxa SC2]
gi|309247575|gb|ADO57142.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Paenibacillus polymyxa SC2]
Length = 397
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 89/360 (24%), Positives = 149/360 (41%), Gaps = 26/360 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFL------------------SIAETNKLPYYTLLDTNTGHVI 42
M++ +V +A L + + + L+D +TG VI
Sbjct: 1 MKKKVVAFILACLVALTAVPVGGWAEESRPESKTKVGSAAELAPEALSAILMDADTGTVI 60
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
E PAS+TK+MT + + + K LT + S+ AS S + G M
Sbjct: 61 YEKNSREKLPPASITKIMTMLLTMEAIHDGKLKLTDKVRASEYASSMGGSQIFLEPGEEM 120
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T+D LK + + S ND +VA+AE + +E+ FV+ MN + LGL THF N +G+
Sbjct: 121 TVDEMLKGIAMASGNDASVAMAEKIAGSEQAFVEMMNAKVQQLGLKDTHFANCNGLPVEN 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGL----EIKGKKYPNTNWAVGTFLGADGMKT 218
HY++A D+A++S + + + +K NTN V + GADG+KT
Sbjct: 181 HYSSAHDIAVMSRELLKYPQITKYTGAYQDYLRKSSVKPFWLVNTNKLVRFYTGADGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
G+T + F + A+A + ++AV+LG + RN +S+ F T + K
Sbjct: 241 GYTSEAKFCLSATAKRDGLRVVAVVLGEPNTKIRNNEVSSMFDYAFSQYTMKSIYKPGEK 300
Query: 279 DFYQQNLSNEVPNISEE----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ +P + + K+ N T E + S + +
Sbjct: 301 LGSVKVEKGVLPELEIQADRSYSVLVKKGGNKQTLRHELQLTPSLKAPVRVGDPVGKLVV 360
>gi|90424200|ref|YP_532570.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisB18]
gi|90106214|gb|ABD88251.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisB18]
Length = 418
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 81/317 (25%), Positives = 140/317 (44%), Gaps = 11/317 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P L++ +TG V+ E D P+S+ KLMT +VF L++ LT +S+
Sbjct: 55 DVDAPTAILVEASTGSVLYEKNADELRAPSSMMKLMTVELVFRALQQGDIKLTDQYQVSE 114
Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
NA S + S + +++ L+ IV+S ND + AE+L E+ F + +
Sbjct: 115 NAWRKGGAPAGNSTMFAEIHSRIAVEDLLRGAIVQSGNDACMVFAEALGGGERGFAELLT 174
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ LGL+ + F N++G+ G+ + R++A L+ + +P++ F + +
Sbjct: 175 KRARELGLAKSTFANSNGLPDPGNKMSVRELARLARHLIQTYPEFYKIFGEREFTWNKIR 234
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N + GADG+KTG+T G+ +V SA+Q LI VI G D + R + L
Sbjct: 235 QTNRNPLLTMLDGADGLKTGYTKEGGYGMVGSAVQNGMRLIVVINGVEDIDDRASEAKKL 294
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-- 317
L GF N R N Y + E ++ + ++ N K
Sbjct: 295 LEWGFRNFESRALFNPQDAVGYAKVFGGESRSVKLTSTEPVRVMVQKNGSDKLIARIVYS 354
Query: 318 ----SHFIDFEKITLLK 330
+ + I ++K
Sbjct: 355 GPVRAPIGPGQPIGVIK 371
>gi|293446369|ref|ZP_06662791.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B088]
gi|291323199|gb|EFE62627.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli B088]
gi|324119040|gb|EGC12929.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167]
Length = 390
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 149/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|254196217|ref|ZP_04902641.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei S13]
gi|169652960|gb|EDS85653.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei S13]
Length = 437
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 84/331 (25%), Positives = 148/331 (44%), Gaps = 15/331 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 67 TYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKI 126
Query: 75 MLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 127 TMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 186
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 187 QFVNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKE 246
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILG 245
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 247 FTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMG 306
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTT 299
+ R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 307 ETKESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIGTPRVYKGKSNNVQVGVKKDQFITVP 366
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 367 RGLADKVKPEVALNAPLIAPLADGQVVGSVK 397
>gi|322833903|ref|YP_004213930.1| Beta-lactamase [Rahnella sp. Y9602]
gi|321169104|gb|ADW74803.1| Beta-lactamase [Rahnella sp. Y9602]
Length = 402
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 85/360 (23%), Positives = 150/360 (41%), Gaps = 28/360 (7%)
Query: 1 MR-----QFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIA 43
M+ + + +A + + + A Y L+D N+G V+A
Sbjct: 1 MKLVNTSRLVKSLAFGTVITLSAASAYADDVNLKTMIPGVPQIDAEAYILIDYNSGKVLA 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFK 97
E D +PASLTK+MT+YV+ +K K T +T+ +A K
Sbjct: 61 EMNADARRDPASLTKMMTSYVIGQSIKAGKISPTDIVTVGPDAWATGNPVFKGSSLMFLK 120
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
G + + + +I++S ND VA+A+ + ++ FV MNN +LGL THF HG
Sbjct: 121 PGDRVPVSELNRGIILQSGNDACVAMADHVAGSQDAFVAIMNNYVNSLGLKNTHFGTVHG 180
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGM 216
+ G Y++ARDMA++ + D P+ ++ K + N N + DG+
Sbjct: 181 LDAAGQYSSARDMALIGQALIRDVPEEYATYKEKEFTFNNIRQMNRNGLLWDNSLNVDGI 240
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
KTG T ++G+N+VASA +G LI+ ++G R S LL+ GF +
Sbjct: 241 KTGHTDSAGYNLVASATEGQMRLISAVMGGHTYKGREVESKKLLTWGFRFFETVSPLKAG 300
Query: 277 I----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + + ++ T + + + +K ++ +
Sbjct: 301 KEFASEPVWFGDTDRVALGVEKDAYLTIPRGRMKDLKASYVLNTPELHAPLQKNQVVGSI 360
>gi|307138677|ref|ZP_07498033.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H736]
gi|331642633|ref|ZP_08343768.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli H736]
gi|331039431|gb|EGI11651.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli H736]
Length = 388
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 92/351 (26%), Positives = 153/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + + + +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|89074975|ref|ZP_01161420.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp.
SKA34]
gi|89049214|gb|EAR54778.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium sp.
SKA34]
Length = 391
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 88/338 (26%), Positives = 150/338 (44%), Gaps = 9/338 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++A A ++ + A Y L+D N+G ++A N PASLTK+MT++V+
Sbjct: 16 TLLASATVAASPAVVPEAPQIAAKGYILVDYNSGKILAGNNEYEKLAPASLTKIMTSFVI 75
Query: 66 FSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+K + ISKNA S + G ++ + + + +IV S ND VA
Sbjct: 76 GQEIKNGNISPDDTVVISKNAWAKNFPGSSKMFLEVGKSVKVSDLNRGIIVDSGNDACVA 135
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +++ FV MN +KNLG+ +THF N HG+ + YTT D++IL+ + D P
Sbjct: 136 MAEHVAGSQESFVDLMNGWAKNLGMKSTHFANVHGLDRPDLYTTPYDLSILTRSLIRDLP 195
Query: 183 QYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ K G N N + DG+KTG T +G+++V++A +G+ LI+
Sbjct: 196 NEFKIYDEKSFTYNGITQYNRNGLLWDKSMHVDGLKTGHTDNAGYSLVSTATEGNMRLIS 255
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVC 297
V++G +N R S LL+ GF + + + ++E
Sbjct: 256 VVMGTASKNARLAESKKLLNFGFRFYETLSPNKKDQTIETEKVWMGDTDTVNLGVTENTY 315
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T + + KE K ++ +
Sbjct: 316 VTLPRSQAKDLKASFVLTKE-LKAPITKGEVVGKLTYR 352
>gi|67642413|ref|ZP_00441170.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei GB8 horse 4]
gi|121598771|ref|YP_991575.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei SAVP1]
gi|124385285|ref|YP_001027352.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei NCTC 10229]
gi|126449591|ref|YP_001082709.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei NCTC 10247]
gi|126454122|ref|YP_001064741.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
1106a]
gi|167003222|ref|ZP_02269012.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei PRL-20]
gi|242314349|ref|ZP_04813365.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
1106b]
gi|254176979|ref|ZP_04883636.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei ATCC 10399]
gi|254202020|ref|ZP_04908384.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei FMH]
gi|254207352|ref|ZP_04913703.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei JHU]
gi|254357610|ref|ZP_04973884.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei 2002721280]
gi|121227581|gb|ABM50099.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei SAVP1]
gi|124293305|gb|ABN02574.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
10229]
gi|126227764|gb|ABN91304.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
1106a]
gi|126242461|gb|ABO05554.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
10247]
gi|147747914|gb|EDK54990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei FMH]
gi|147752894|gb|EDK59960.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei JHU]
gi|148026674|gb|EDK84759.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei 2002721280]
gi|160698020|gb|EDP87990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei ATCC 10399]
gi|238523562|gb|EEP87000.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei GB8 horse 4]
gi|242137588|gb|EES23990.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
1106b]
gi|243061219|gb|EES43405.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei PRL-20]
Length = 437
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 15/331 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 67 TYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKI 126
Query: 75 MLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 127 TMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 186
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 187 QFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKE 246
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILG 245
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 247 FTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMG 306
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTT 299
+ R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 307 ETKESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIGTPRVYKGKSNNVQVGVKKDQFITVP 366
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 367 RGLADKVKPEVALNAPLIAPLADGQVVGSVK 397
>gi|312882711|ref|ZP_07742448.1| D-alanyl-D-alanine carboxypeptidase [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369672|gb|EFP97187.1| D-alanyl-D-alanine carboxypeptidase [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 392
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 88/339 (25%), Positives = 147/339 (43%), Gaps = 9/339 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ + + A Y L+D ++G V+AE +PASLTK+MT+YV
Sbjct: 17 VLATTASSAFASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMHTKLSPASLTKMMTSYV 76
Query: 65 VFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ L L +TISKNA S + G+++ ++ + +I++S ND V
Sbjct: 77 IGQELARGNISLQDDVTISKNAWAKNFPESSKMFIEVGTSVKVEELNRGIIIQSGNDACV 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+AE + +E FV MN + +G+ THF N HG+ Y+T DMA+L + D
Sbjct: 137 AMAEHIAGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNPNLYSTPYDMALLGSALIRDV 196
Query: 182 PQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P + K G N N + DG+KTG T +G+++V+SA +G L+
Sbjct: 197 PDEYRIYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLV 256
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEV 296
AV++G + N+R S LLS GF + + N + ++
Sbjct: 257 AVVMGTKNANSRKSESKKLLSYGFRFFETVAPHKAGETFVEEKIWMGNKDTVALGLDKDT 316
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T + + +KE +K ++ +
Sbjct: 317 YVTLPRGQAKSLKASFVLEKE-LEAPIKKGDVVGKLYYQ 354
>gi|331677915|ref|ZP_08378590.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli H591]
gi|331074375|gb|EGI45695.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli H591]
Length = 390
Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 149/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPQIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|156977862|ref|YP_001448768.1| D-alanyl-D-alanine carboxypeptidase [Vibrio harveyi ATCC BAA-1116]
gi|156529456|gb|ABU74541.1| hypothetical protein VIBHAR_06653 [Vibrio harveyi ATCC BAA-1116]
Length = 388
Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats.
Identities = 92/343 (26%), Positives = 150/343 (43%), Gaps = 14/343 (4%)
Query: 6 VIIAMAMLSNIFPFL-----SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ +A +L I + Y L+D +G +IAE PASLTKLM
Sbjct: 8 ITLACLLLQTISAPALAVVTPNPPQLQAKGYVLMDFQSGAIIAEQNARAGLAPASLTKLM 67
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
TAYVV +K + +T+S+NA S + +T+ N ++ +I++S N
Sbjct: 68 TAYVVGQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPKDEITVANLMRGVIIQSGN 127
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+AE + E FV MN + L L+ T+F+N+HG+ G T+ DMA L I
Sbjct: 128 DACVALAEHVAGGEGAFVALMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATLMQSI 187
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
D P+ + K + N N + DG KTG+T +G+++V+SA QG
Sbjct: 188 INDVPEVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSAKQGK 247
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNI 292
LI+V++G + +R S +LLS GF ++ ++ N+S
Sbjct: 248 MRLISVVMGTPSKQSRITQSKNLLSYGFRFYDTKQVAKQGEVQASAKVWKGNVSEIDLGF 307
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ T + + E K ++ + K
Sbjct: 308 AQDAYLTLPRSLTAGLDKSVVVN-EPLIAPIAKGDVVGKVVWK 349
>gi|167585315|ref|ZP_02377703.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ubonensis
Bu]
Length = 438
Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats.
Identities = 88/337 (26%), Positives = 150/337 (44%), Gaps = 15/337 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D + V+A D PASLTKLMTAY+VF L +KK
Sbjct: 68 TYMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKI 127
Query: 75 MLTTPITIS--KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 128 SMEQIVTPSAAVRRVGTDESRMFIEADKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 187
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN+ +K LG+ THF + +G+ HYTTA D+A LS + DFPQY F K
Sbjct: 188 QFVNMMNDEAKRLGMKGTHFADVNGMPDPNHYTTAGDLATLSAHLIRDFPQYYGIFSEKE 247
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------DQSLIAVILG 245
+ + N N + DG+KTG T A+GF +++SA + + L++V++G
Sbjct: 248 FKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGFCLISSAKRQMPGTADAPRRLVSVMMG 307
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTT 299
+ R + S +L+ G+ + Y+ +N + + V
Sbjct: 308 ETKESDRTQDSMKMLNYGYSAFDAVRLFKGGQAISTPRLYKGKSNNVQVGVKGDQWVTVP 367
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ T+++ + D + + +K K
Sbjct: 368 RGLGDKVKTEVEVNAPLIAPLADGQPVGTVKIVADGK 404
>gi|16765392|ref|NP_461007.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|62180641|ref|YP_217058.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|167990972|ref|ZP_02572071.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168259641|ref|ZP_02681614.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|197251570|ref|YP_002147019.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|224583442|ref|YP_002637240.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|585694|sp|P37604|DACD_SALTY RecName: Full=D-alanyl-D-alanine carboxypeptidase dacD;
Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
Full=Penicillin-binding protein 6B; Short=PBP-6B; Flags:
Precursor
gi|16420593|gb|AAL20966.1| DD-carboxypeptidase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|62128274|gb|AAX65977.1| DD-carboxypeptidase, penicillin-binding protein 6b [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|197215273|gb|ACH52670.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|205330511|gb|EDZ17275.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205350814|gb|EDZ37445.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|224467969|gb|ACN45799.1| DD-carboxypeptidase [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|261247276|emb|CBG25100.1| penicillin-binding protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994112|gb|ACY88997.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158623|emb|CBW18134.1| penicillin-binding protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913053|dbj|BAJ37027.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321224707|gb|EFX49770.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322715112|gb|EFZ06683.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323130385|gb|ADX17815.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332988997|gb|AEF07980.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 390
Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 151/349 (43%), Gaps = 21/349 (6%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + + LL G N + ++ K +
Sbjct: 245 LIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIWYG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEKITLL 329
+ ++ + + + K K+ E+ +++ +
Sbjct: 305 DKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQQVGEI 353
>gi|50120239|ref|YP_049406.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium
atrosepticum SCRI1043]
gi|49610765|emb|CAG74210.1| D-alanine carboxypeptidase [Pectobacterium atrosepticum SCRI1043]
Length = 403
Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats.
Identities = 90/344 (26%), Positives = 149/344 (43%), Gaps = 15/344 (4%)
Query: 4 FLVIIAMAML----SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
LVI A + N+ + Y L+D N+G V+AE D +PASLTK+
Sbjct: 18 LLVISASSFAYAEDINLKTMIPGVPQIDAESYILIDYNSGKVLAEMNADTRRDPASLTKM 77
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIV 113
MT+YV+ +K K +T+ K+A K G + + + +I+
Sbjct: 78 MTSYVIGQAIKSGKISPNDIVTVGKDAWATGNPTFQGSSLMFLKPGDRVPVSQLNRGIIL 137
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+A+ + ++ FV MN K LGL T+F HG+ G +++ARDMA++
Sbjct: 138 QSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLQNTNFETVHGLDAPGQFSSARDMALI 197
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA 232
+ D P+ ++ K + PN N + L DG+KTG T ++GFN+VASA
Sbjct: 198 GQALIRDVPEEYATYKEKEFTFNNIRQPNRNGLLWDSSLNVDGIKTGHTSSAGFNLVASA 257
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNE 288
+G LI+ +LG + R S LL+ GF + + + +
Sbjct: 258 TEGQMRLISAVLGGRNAKGRESESKKLLTWGFRFFETVAPLKAGKEFASEPVWFGDNDRV 317
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++ T + + D K ++ +
Sbjct: 318 ALGVEKDAYLTIPRGRMKDLKASYVLDNTELHAPLAKNQVVGSI 361
>gi|152969235|ref|YP_001334344.1| D-alanyl-D-alanine carboxypeptidase fraction A [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|238893699|ref|YP_002918433.1| D-alanyl-D-alanine carboxypeptidase fraction A [Klebsiella
pneumoniae NTUH-K2044]
gi|150954084|gb|ABR76114.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
protein 5 [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238546015|dbj|BAH62366.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 399
Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats.
Identities = 88/350 (25%), Positives = 150/350 (42%), Gaps = 19/350 (5%)
Query: 2 RQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
R + +++A LS+ + A + L+D N+G V+AEN D +P
Sbjct: 8 RLLITALSVAALSSAARADDLNIKTMIPGAPQIDAESWILIDYNSGKVLAENNADSRRDP 67
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNA 107
ASLTK+MT+YV+ +K K + +T+ +A K G + +
Sbjct: 68 ASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQL 127
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
++ + ++S ND VA+A+ + ++ FV MNN LGL THF HG+ G Y++A
Sbjct: 128 IRGINLQSGNDACVAMADYVAGSQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSA 187
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGF 226
RDMA++ + D P ++ K G + N N + DG+KTG T +G+
Sbjct: 188 RDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGY 247
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQ 282
N+VASA +G LI+ ++G R S LL+ GF I + +
Sbjct: 248 NLVASATEGQMRLISAVMGGRTFKGRESESKKLLTWGFRFFETVNPIKAGKEFASEPAWF 307
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++V T + + + +K ++
Sbjct: 308 GDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNNTELHAPLQKNQVVGTI 357
>gi|167617731|ref|ZP_02386362.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis Bt4]
Length = 381
Score = 202 bits (512), Expect = 7e-50, Method: Composition-based stats.
Identities = 84/329 (25%), Positives = 148/329 (44%), Gaps = 15/329 (4%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
P + L+D ++ V+A D PASLTKLMTAY+VF L KK +
Sbjct: 13 APGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 72
Query: 77 TTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+T S+ S + +++ + + +I++S ND A+A+AE + +E +F
Sbjct: 73 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 132
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 133 VNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLATLSTHLIRDYPDYYNIFSVKEFT 192
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 193 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMMGET 252
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTTQK 301
+ R + S +L+ G+ + Y+ +N + ++ + +
Sbjct: 253 KESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIDTPRVYKGKSNNVQVGVKKDQFITVPRG 312
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ + D + + +K
Sbjct: 313 LADKVKPEVALNAPLIAPLADGQAVGSVK 341
>gi|327393100|dbj|BAK10522.1| penicillin-binding protein 5 precursor DacA [Pantoea ananatis
AJ13355]
Length = 410
Score = 202 bits (512), Expect = 7e-50, Method: Composition-based stats.
Identities = 87/352 (24%), Positives = 150/352 (42%), Gaps = 20/352 (5%)
Query: 1 MRQFLV--IIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ V +IA ++ + Y L+D N+G V+AE D
Sbjct: 17 LKRLTVGSLIAFSLSHAAIADDVNLKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARR 76
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ ++A K G + +
Sbjct: 77 DPASLTKMMTSYVIGQAVKAGKIHQDDIVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVS 136
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++++S ND VA+A+ + ++ FV MNN K LGL THF HG+ G Y+
Sbjct: 137 QLTRGIVLQSGNDACVAMADYVAGSQDAFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYS 196
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P+ ++ K + N N T L DG+KTG T ++
Sbjct: 197 SARDMALIGQALIRDVPEEYAVYKEKEFTFNNIRQMNRNGLLWDTSLTVDGIKTGHTASA 256
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 257 GYNLVASATEGQMRLISAVMGGHTFKGRETESKKLLTWGFRFFETVAPLKAGKEFASEPV 316
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N + ++ T + + +K ++ +
Sbjct: 317 WFGNSDRVQLGVEKDAYLTIPRGRMKDLKASYVLTNTELHAPLKKNQVVGSI 368
>gi|303241570|ref|ZP_07328070.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
cellulolyticus CD2]
gi|302590888|gb|EFL60636.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
cellulolyticus CD2]
Length = 403
Score = 202 bits (512), Expect = 7e-50, Method: Composition-based stats.
Identities = 90/367 (24%), Positives = 158/367 (43%), Gaps = 31/367 (8%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAET---------------------NKLPYYTLLDTN 37
+R+ L +I + +++N+F + AE K L+D
Sbjct: 2 IRKVLFRHLIVICIVANLFSVFAFAEEERPVYNPNTVNSIMASTSISELKAKASVLMDAY 61
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG V+ EN + AS+TK+M+ + + K L +T S+ AS S + +
Sbjct: 62 TGQVLYENKSNEKLPIASVTKVMSMLLAMEAIDSGKISLKDMVTASEYASGMGGSQAYIE 121
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
G ++ +ALK + + S+ND+ V++AE + +E+ FV MN + LG+ T F + G
Sbjct: 122 PGEQYSVHDALKAIALHSSNDVTVSVAELVAGSEEAFVVQMNEKAGELGMKNTLFKDCTG 181
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADG 215
+ GH+++A D+A++S + T P+ + Y + NTN V + G DG
Sbjct: 182 LTDEGHFSSANDIALMSRELVTKHPKILEYSSVYTDTFRNGEFDLTNTNRLVKFYSGCDG 241
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
+KTGFT A+GF + A+ + + LI+V+LG D NTR + LL GF N
Sbjct: 242 LKTGFTRAAGFCLSATVSRNNMRLISVVLGEPDSNTRFAETRKLLDYGFANYETADVNKK 301
Query: 276 IIKDFYQQNLSNEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ ++ + + Q+ + +K+ +
Sbjct: 302 GELVSEISVKKGLTSKAAGVIGNDVKILLPRGQKTKIIRQVALENSITAPLKAGQKVGEI 361
Query: 330 KNKITKK 336
I +K
Sbjct: 362 IYMIEEK 368
>gi|82777459|ref|YP_403808.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae Sd197]
gi|81241607|gb|ABB62317.1| penicillin binding protein 6b [Shigella dysenteriae Sd197]
Length = 378
Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 148/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 2 FVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTSGNEHQQRNPASLTKLMTGY 61
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 62 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN + L L THF HG+ G +++A D+A+LS I
Sbjct: 122 DACVALADYIAGGQRQFVEMMNNYVEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 181
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 182 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNIDGLKTGHTSGAGFNLMASAVDGQ 241
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 242 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGT 301
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 302 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 341
>gi|254181990|ref|ZP_04888587.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
1655]
gi|184212528|gb|EDU09571.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
1655]
Length = 437
Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats.
Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 15/331 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 67 TYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKI 126
Query: 75 MLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 127 TMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 186
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 187 QFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKE 246
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILG 245
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 247 FTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMG 306
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTT 299
+ R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 307 ETKESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIDTPRVYKGKSNNVQVGVKKDQFITVP 366
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 367 RGLADKVKPEVALNAPLIAPLADGQVVGSVK 397
>gi|330006051|ref|ZP_08305469.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
gi|328535989|gb|EGF62402.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella sp. MS 92-3]
Length = 423
Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats.
Identities = 88/350 (25%), Positives = 150/350 (42%), Gaps = 19/350 (5%)
Query: 2 RQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
R + +++A LS+ + A + L+D N+G V+AEN D +P
Sbjct: 32 RLLITALSVAALSSAARADDLNIKTMIPGAPQIDAESWILIDYNSGKVLAENNADSRRDP 91
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNA 107
ASLTK+MT+YV+ +K K + +T+ +A K G + +
Sbjct: 92 ASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQL 151
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
++ + ++S ND VA+A+ + ++ FV MNN LGL THF HG+ G Y++A
Sbjct: 152 IRGINLQSGNDACVAMADYVAGSQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSA 211
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGF 226
RDMA++ + D P ++ K G + N N + DG+KTG T +G+
Sbjct: 212 RDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGY 271
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQ 282
N+VASA +G LI+ ++G R S LL+ GF I + +
Sbjct: 272 NLVASATEGQMRLISAVMGGRTFKGRESESKKLLTWGFRFFETVNPIKAGKEFASEPAWF 331
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++V T + + + +K ++
Sbjct: 332 GDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNNTELHAPLQKNQVVGTI 381
>gi|312171708|emb|CBX79966.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia amylovora
ATCC BAA-2158]
Length = 411
Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 149/353 (42%), Gaps = 21/353 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPF---------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ + +A+ N+ + + Y L+D N+G V+AE D
Sbjct: 17 LKRLTAGMLIALSLNVVAYADDVNIKTMIPGVPEIDAEAYILIDYNSGKVLAEKNADARR 76
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ K+A K G + +
Sbjct: 77 DPASLTKMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 136
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++++S ND VA+A+ + ++ FV MNN K LGL THF HG+ G Y+
Sbjct: 137 QLTRGIVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYS 196
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P + K + N N T L DG+KTG T ++
Sbjct: 197 SARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTNLNVDGIKTGHTESA 256
Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KD 279
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 257 GYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAGKEFASEP 316
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N + ++V T + + +K ++
Sbjct: 317 VWFGNSDRVQLGVEKDVYLTIPRGRMKDLKASYTLSNTELHAPLQKNQVIGTI 369
>gi|90406825|ref|ZP_01215017.1| putative D-alanyl-D-alanine carboxypeptidase [Psychromonas sp.
CNPT3]
gi|90312062|gb|EAS40155.1| putative D-alanyl-D-alanine carboxypeptidase [Psychromonas sp.
CNPT3]
Length = 385
Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats.
Identities = 97/342 (28%), Positives = 159/342 (46%), Gaps = 13/342 (3%)
Query: 1 MRQF-LVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ L+ + +A N + A Y L+D ++G V+AEN PASL
Sbjct: 1 MKRLGLLFVGLAFSVNALATPRVIPNAPVIAAKAYLLVDFDSGKVLAENNSQKILAPASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TK+MT+Y++ + LK + IS+ A S + G +++D+ +I+
Sbjct: 61 TKMMTSYIIGNELKVGNIHRDDKVLISEKAWSKNFPESSKMFIEVGKEVSVDDLNHGIII 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+AE + +E FV MN+ + LG++ THFMN+HG+ HYTTA+DMA L
Sbjct: 121 QSGNDACVAMAEYIAGSEGAFVDLMNSWAIQLGMNNTHFMNSHGLNAKDHYTTAQDMATL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA 232
+ + D P+ + K + G + N N L DG+KTG T A+G+++V+SA
Sbjct: 181 AKALIRDLPEEYKLYSKKSFKYNGIEQYNRNGLLWDKSLNVDGLKTGHTDAAGYSLVSSA 240
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNE 288
++GD LI+V++G RN S +L+ GF + K +
Sbjct: 241 VKGDMRLISVVMGTRSSTARNVESKKILNWGFRFFETLTPYHAGDKLANERIWMGTQETI 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ + + N DKE K ++
Sbjct: 301 NLGVNVDTTLVLPRGQSKNLNADFVIDKE-LRAPITKGQVVG 341
>gi|313901874|ref|ZP_07835294.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
subterraneus DSM 13965]
gi|313467867|gb|EFR63361.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
subterraneus DSM 13965]
Length = 437
Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats.
Identities = 88/324 (27%), Positives = 148/324 (45%), Gaps = 14/324 (4%)
Query: 18 PFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ ++D +G ++ E D P +PAS++KLMT + + +
Sbjct: 72 AGEAGGPGFPARSAALLVMDPASGQILWEKNGDEPRHPASISKLMTLLLTLEAIDAGQIR 131
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L +T+S A P S + + G +T+++ +K + V SAND VA+AE + +FV
Sbjct: 132 LQDQVTVSPRAQGTPGSTAFLEAGERITVEDLIKAVAVASANDACVALAEYISGDVDRFV 191
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQI---- 190
Q MN + LGL+ T F++ HG+ G+ +ARD+A+LS + P+ +HY I
Sbjct: 192 QRMNQRAAELGLTRTRFVDPHGLTDQPGNRMSARDVALLSRYLINHHPEILHYTSIWEDW 251
Query: 191 -KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ + NTN V + G DG+KTG T SG ++V +A +GD I V+LGA D
Sbjct: 252 LRKGTDREFWLTNTNKLVAWYEGVDGLKTGLTDESGPSVVVTARKGDDRFIVVVLGAPDS 311
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEE---VCTTQKEI 303
NTR + ++ LL F + + +VP EE V + E
Sbjct: 312 NTRWREASRLLDWAFASFDSVPVARPGQPLRAVRVAEGRRLQVPVTVEEVFGVTVPRGEG 371
Query: 304 INYNTQMKEAKDKESHFIDFEKIT 327
++ + + +++
Sbjct: 372 GRVRWDLEVTEPVPAPVAPGQRVG 395
>gi|225174857|ref|ZP_03728854.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
AHT 1]
gi|225169497|gb|EEG78294.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
AHT 1]
Length = 389
Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats.
Identities = 86/335 (25%), Positives = 139/335 (41%), Gaps = 11/335 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
M+ + L+D +G V+ EN PAS+TK+MT + L+E
Sbjct: 16 MVGAGTAAAAPEFEFSSKAQLLMDVGSGEVLYENNIHEQLYPASVTKIMTMLLAMEALEE 75
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
K + +S+ A+ + S G +T ++ + + V SAND + A+AE L +
Sbjct: 76 GKVKPDDLVPVSEAAAAHGGSQIFLSPGDRITFEDLMIGIGVGSANDGSWAMAEFLAGSA 135
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--------RIKTDFPQ 183
FV MN ++ LG++ T+FMN HG+ HYTTA D+A++S
Sbjct: 136 DAFVTQMNEKARELGMNNTNFMNPHGLHDENHYTTAYDIALMSRELLRYPKIHEWITIWM 195
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + K + +G N N V + G DG+KTGFT +G + A+A +GD +AVI
Sbjct: 196 DEEFLKGKIQKEEGVYLSNANRIVRYYDGGDGLKTGFTSEAGNCVSATAKRGDTRFMAVI 255
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN---ISEEVCTTQ 300
LGA R + +LL GF N +P ++ + +
Sbjct: 256 LGAPGRPALFDEAKTLLDYGFANYKSVPIAQKGEVFGTVMVDKGVIPEVDIVAGDDLSLL 315
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E + E + + + I K
Sbjct: 316 LEKAQQDEVDLEVSLPTRLPAPVPEGKAVGSLIVK 350
>gi|200388770|ref|ZP_03215382.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|199605868|gb|EDZ04413.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
Length = 390
Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 151/349 (43%), Gaps = 21/349 (6%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + + LL G N + ++ K +
Sbjct: 245 LIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIWYG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEKITLL 329
+ ++ + + + K K+ E+ +++ +
Sbjct: 305 DKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQQVGEI 353
>gi|164688533|ref|ZP_02212561.1| hypothetical protein CLOBAR_02178 [Clostridium bartlettii DSM
16795]
gi|164602946|gb|EDQ96411.1| hypothetical protein CLOBAR_02178 [Clostridium bartlettii DSM
16795]
Length = 383
Score = 202 bits (512), Expect = 8e-50, Method: Composition-based stats.
Identities = 95/345 (27%), Positives = 162/345 (46%), Gaps = 14/345 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL------PYYTLLDTNTGHVIAENYPDHPWNPA 54
M++F+ + +L L A+ N L+D +G V+ E PA
Sbjct: 1 MKKFIGVFLAIILIISQSTLVFADKNGANLNLKCKSAVLMDVTSGKVLYEKNCHEKLPPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK+MT ++ ++ K LT +T+S+ AS S + T T+D LK + V
Sbjct: 61 SVTKVMTMLLICEAVESNKIKLTDEVTVSETASSMGGSQIFLEPNETQTVDTLLKGIAVA 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND VA+AE + + + FV MNN +K LG+ T+F+N +G+ HYT+A D+A++S
Sbjct: 121 SANDACVAMAEYIGGSIEGFVDMMNNKAKELGMKDTNFVNTNGLPVDNHYTSAYDIALMS 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKY-----PNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ + + GKK NTN + + GA G+KTGFT + + +
Sbjct: 181 RELLKHEMIEKYLTTWMDKVVVGKKQATIGLANTNKMIKYYNGATGVKTGFTGEAKYCVS 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY---QQNLS 286
ASA +G L++V+L R K +++LL GF N K + K + ++ S
Sbjct: 241 ASAKRGKTHLVSVVLRGETSQERFKDASTLLDYGFANYESVKICSKDQKLYTLKMRKADS 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
++ ++++ + K+ K E + +K ++L
Sbjct: 301 EQIDLVAKDDLGILIKKGESKNFTKKIKVNEDIKLPVKKGSVLGK 345
>gi|109897877|ref|YP_661132.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudoalteromonas
atlantica T6c]
gi|109700158|gb|ABG40078.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Pseudoalteromonas atlantica T6c]
Length = 390
Score = 202 bits (512), Expect = 9e-50, Method: Composition-based stats.
Identities = 97/327 (29%), Positives = 151/327 (46%), Gaps = 10/327 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++ + A + + L+D TG VIAE D PASLTK+MT+YV+ +
Sbjct: 23 AASAAVIIPDAPSVSAKGFILVDFQTGKVIAEQNSDIQIPPASLTKMMTSYVIGKEIANG 82
Query: 73 KAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
T +TIS+NA S + G+ +++ + + +IV+S ND VA+AE +
Sbjct: 83 NIKDTDMVTISENAWAKNFPDSSKMFIEVGTQISVGDLNRGIIVQSGNDACVAMAEHIAG 142
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+E F MN ++ LG+++THF+N+HG+ HYTT RDMA L+ + TD P +
Sbjct: 143 SEDAFASMMNLHAEKLGMTSTHFVNSHGLQDADHYTTPRDMATLARALITDVPNEYKVYS 202
Query: 190 IKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
K K N N L DG+KTG T +G+++V+SA QGD LIAV++GA
Sbjct: 203 EKEFTYNNIKQYNRNGLLWDKSLNVDGIKTGHTSDAGYSLVSSATQGDMRLIAVVMGADS 262
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE--VCTTQKE 302
R + LL GF + + IS++ + + +
Sbjct: 263 ERARKVENKKLLKYGFRFYETITPYQAGESFVSHRIFMGDKETVDLGISQDTPITIPRGQ 322
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLL 329
N + K E+ E + L
Sbjct: 323 SKNLEANFELDKKLEAPLAKGEVVGKL 349
>gi|170704053|ref|ZP_02894691.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
IOP40-10]
gi|170131039|gb|EDS99728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia ambifaria
IOP40-10]
Length = 368
Score = 202 bits (512), Expect = 9e-50, Method: Composition-based stats.
Identities = 85/328 (25%), Positives = 147/328 (44%), Gaps = 14/328 (4%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
P + L+D + V+A D PASLTKLMTAY+VF L +KK +
Sbjct: 1 MPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISM 60
Query: 77 TTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
IT S+ S + +++ + + +I++S ND A+A+AE + +E +F
Sbjct: 61 EQIITPSEAVRRVGLDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEGQF 120
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MN ++ LG+ THF + +G+ HYTTA D+A LS + DFPQY F K +
Sbjct: 121 VTLMNAEAQRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFK 180
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILGALD 248
+ N N + DG+KTG T A+G+ ++ASA + G + L++V++G
Sbjct: 181 YNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLVSVMMGEPK 240
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKE 302
R + S +L+ G+ + Y+ + + + V +
Sbjct: 241 EGERTQDSMKMLNYGYSAFDAVRLFKGGQAMSTPRVYKGKENTVQVGVKSDQWVTVPRGL 300
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
++ + + +++ +K
Sbjct: 301 GDKVKPEVDVNAPLIAPLAEGQQVGTVK 328
>gi|331673546|ref|ZP_08374309.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli TA280]
gi|331068819|gb|EGI40211.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli TA280]
Length = 390
Score = 202 bits (512), Expect = 9e-50, Method: Composition-based stats.
Identities = 90/340 (26%), Positives = 149/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN + L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAGKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LLS G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLSWGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISVHQRVGEI 353
>gi|167040213|ref|YP_001663198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X514]
gi|300914297|ref|ZP_07131613.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X561]
gi|307724467|ref|YP_003904218.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X513]
gi|166854453|gb|ABY92862.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X514]
gi|300889232|gb|EFK84378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X561]
gi|307581528|gb|ADN54927.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X513]
Length = 382
Score = 202 bits (512), Expect = 9e-50, Method: Composition-based stats.
Identities = 87/352 (24%), Positives = 154/352 (43%), Gaps = 25/352 (7%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++F++ I + +S++ + + ++D TG V+ E P AS TK
Sbjct: 4 MKKFVLYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNPHEKLPMASTTK 63
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT V L +T+SK A+ S+ G + +++ L L++ S ND
Sbjct: 64 IMTLLVALEK-----GNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGND 118
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176
A AIAE + + + F++ MN ++ +G THF+ G+ HYTTA D+A+++
Sbjct: 119 AATAIAEHIGGSVENFIEIMNQKAREIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 178
Query: 177 IKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+P++ K I + N N + + GADG+KTGFT +G +V+
Sbjct: 179 -AFRYPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 237
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK------KINYIIKDFYQQN 284
SA + + IAV+L + + S +L F K I I + ++N
Sbjct: 238 SATRDGRRFIAVVLNSP---PMWEDSMKILDYAFSKYKPYKVLEKGELIKKIKVEGGKEN 294
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ V + + E + N + K ++ EKI + KI ++
Sbjct: 295 SVSVVSERECIIPALEDEKQDVNLEFHFPKSVKAPVEKGEKIGYVTVKIGEE 346
>gi|299133891|ref|ZP_07027085.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
gi|298591727|gb|EFI51928.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
Length = 408
Score = 201 bits (511), Expect = 9e-50, Method: Composition-based stats.
Identities = 84/314 (26%), Positives = 134/314 (42%), Gaps = 8/314 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P L+D TG V+ E D P+S+ KLMTA V+F L + + LT IS+
Sbjct: 45 DTDAPTAILIDAKTGSVLFEKNADELRAPSSMMKLMTAEVIFHALAKGEIKLTDEYRISE 104
Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
NA S S +++D+ L L+++S ND +A+AE +E FV M
Sbjct: 105 NAWRKGGAPSGSSTMFAAIHSQVSIDDLLHGLVIQSGNDSCIALAEGYAGSEDAFVNRMQ 164
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+K LGL+ + F N +G+ + + R++A L+ I +P + F + +
Sbjct: 165 ARAKELGLTRSTFGNTNGLPNPDNKMSVRELAHLTRHIILTYPDFYKLFGEREFTWNKIR 224
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N +G+ GADG+KTG+T G+ +V SA+Q LI V+ G D R + L
Sbjct: 225 QMNRNPLLGSLDGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDSGDRAAAAKKL 284
Query: 260 LSMGFYNKTDRKKINYIIKDFY---QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
L GF N R + Y S V ++E + + + +
Sbjct: 285 LEWGFKNFESRTLFDAGQTIAYGKVFGGDSGSVELHADEPVSVMVQKNGNDKLLARIVYT 344
Query: 317 ESHFIDFEKITLLK 330
+ +
Sbjct: 345 GPIHAPVQSGQQVG 358
>gi|167844088|ref|ZP_02469596.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei B7210]
Length = 376
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 84/332 (25%), Positives = 150/332 (45%), Gaps = 15/332 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 5 ATYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 64
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 65 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 124
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 125 AQFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVK 184
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++
Sbjct: 185 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMM 244
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCT 298
G + R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 245 GETKESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIGTPRVYKGKSNNVQVGVKKDQFITV 304
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 305 PRGLADKVKPEVALNAPLIAPLADGQVVGSVK 336
>gi|293397311|ref|ZP_06641583.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
4582]
gi|291420229|gb|EFE93486.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
4582]
Length = 431
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 87/330 (26%), Positives = 142/330 (43%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE+ D +PASLTK+MT+YV+ LK K
Sbjct: 60 VNIKTMIPGVPQIDAESYILIDYNSGKVLAESNADARRDPASLTKMMTSYVIGQALKSGK 119
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ ++A K G + + + + ++S ND VA+A+ +
Sbjct: 120 IGQEDLVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 179
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN K LGL THF HG+ G +++ARDMA++ + D P
Sbjct: 180 AGSQDAFVNLMNTYVKQLGLQNTHFQTVHGLDAQGQFSSARDMALIGQALIRDVPDEYAI 239
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA +G LI+ +LG
Sbjct: 240 YKEKEFTFNNIRQVNRNGLLWDTSLNVDGIKTGHTSAAGYNLVASATEGQMRLISAVLGG 299
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 300 RTYKGRETESKKLLTWGFRFFETVAPLKAGKEFASEPVWFGDADRVELGVDKDVYLTIPR 359
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + K ++ +
Sbjct: 360 GRMKDLKASYVLNTPEIHAPLAKNQVVGSI 389
>gi|115524870|ref|YP_781781.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisA53]
gi|115518817|gb|ABJ06801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisA53]
Length = 418
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 79/353 (22%), Positives = 139/353 (39%), Gaps = 23/353 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------------TNKLPYYTLLDTNTGHVIAEN 45
+R+ + + ++ A P L++ ++G V+ E
Sbjct: 16 LRRIAMAVLLSFAVGSAGVALAANKSVQGATAAKDDGGYDADAPTAILIEASSGSVLFEK 75
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKGS 100
D P+S+ KLMT VF L++ LT +S+N+ S + S
Sbjct: 76 NADELRAPSSMMKLMTVEYVFHALQQGDIKLTDEFKVSENSWRKGGAPAGGSTMFAEIHS 135
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
++++N L+ I++S ND + +AE L E F + + ++ LGL + F N++G+
Sbjct: 136 RVSVENLLRGAIIQSGNDSCMVLAEGLAGGESAFAEKLTQRARELGLPRSTFANSNGLPD 195
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
G+ + R++ L+ + +P Y F + + N N + GADG+KTGF
Sbjct: 196 PGNKMSVRELGKLARHLILTYPDYYKIFGEREFTWNKIRQQNRNPLLTMLEGADGLKTGF 255
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T G+ +V SA Q LI V+ G D + R + + +L GF N R
Sbjct: 256 TKDGGYGMVGSAEQNGMRLIVVVNGLEDADDRAQEAKKILEWGFRNFETRTLFKPQDTVG 315
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE---SHFIDFEKITLLK 330
Y + E ++ K ++ N K E +
Sbjct: 316 YAKVFGGESRSVKLTSTEPVKVMVQKNGSDKLIARIVYSGPVPAPVEPGQPVG 368
>gi|78044481|ref|YP_360920.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996596|gb|ABB15495.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
hydrogenoformans Z-2901]
Length = 391
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 82/344 (23%), Positives = 141/344 (40%), Gaps = 16/344 (4%)
Query: 1 MR--QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M+ +F + + + L+ +++ N+G + D PAS TK
Sbjct: 1 MKPVRFFALFILILCLKTIA-LAEEPQIIGRAAAVINVNSGKFVYLKNADQKMYPASTTK 59
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + L+ + I K A S G ++L++ L +++ SAND
Sbjct: 60 IMTTLIALEK-----GNLSDRVYIDKEACYVEGSAIWLNPGEQLSLEDLLYSIMLNSAND 114
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A+A+A+ + FVQ MN+ ++ LG THF+N +G+ HYTTARD+A+++
Sbjct: 115 SAIAVAKYIGGDVATFVQEMNDKARELGAKNTHFVNPNGLPNDDHYTTARDLALIARAAM 174
Query: 179 TDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + + KY N N + + GA+G+KTG+T + +VASA +
Sbjct: 175 QNPKFREIAATKTKVINRDPKYLRFLQNHNKLLWRYEGANGIKTGYTVKARQCLVASAAR 234
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK--DFYQQNLSNEVPNI 292
+ IAV+LG+ RN + LL F N K ++ + V I
Sbjct: 235 DGEEFIAVVLGSEGRNV-YDDATKLLDYAFNNFKTVKLVSKGQEFGKVEVAGGKEPVKLI 293
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ E Q K E + + + K+
Sbjct: 294 AAEDLYDTVNR-RQEPQFDYQKKIEKLQAPVKAGQRVGKIVVKE 336
>gi|167037551|ref|YP_001665129.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115966|ref|YP_004186125.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166856385|gb|ABY94793.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319929057|gb|ADV79742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 382
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 87/352 (24%), Positives = 154/352 (43%), Gaps = 25/352 (7%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++F++ I + +S++ + + ++D TG V+ E P AS TK
Sbjct: 4 MKKFVLYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNPHEKLPMASTTK 63
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT V L +T+SK A+ S+ G + +++ L L++ S ND
Sbjct: 64 IMTLLVALEK-----GNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGND 118
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176
A AIAE + + + F++ MN ++ +G THF+ G+ HYTTA D+A+++
Sbjct: 119 AATAIAEHIGGSVENFIEIMNQKAREIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 178
Query: 177 IKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+P++ K I + N N + + GADG+KTGFT +G +V+
Sbjct: 179 -AFRYPKFAEIVSTKEKTIPWEGREWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 237
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK------KINYIIKDFYQQN 284
SA + + IAV+L + + S +L F K I I + ++N
Sbjct: 238 SASREGRRFIAVVLNSP---PMWEDSMKILDYAFSKYKPYKVLEKGELIKKIKVEGGKEN 294
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ V + + E + N + K ++ EKI + KI ++
Sbjct: 295 SVSVVSERECIIPALEDEKQDVNLEFHFPKSVKAPVEKGEKIGYVTVKIGEE 346
>gi|319761132|ref|YP_004125069.1| beta-lactamase [Alicycliphilus denitrificans BC]
gi|330822990|ref|YP_004386293.1| beta-lactamase [Alicycliphilus denitrificans K601]
gi|317115693|gb|ADU98181.1| Beta-lactamase [Alicycliphilus denitrificans BC]
gi|329308362|gb|AEB82777.1| Beta-lactamase [Alicycliphilus denitrificans K601]
Length = 387
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 98/342 (28%), Positives = 160/342 (46%), Gaps = 14/342 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+ + ++ Y L+D G V+A D P ASLTKLMT Y+VF
Sbjct: 15 ALMAPAILWAQAPQPPEIAARNYLLVDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDA 74
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
L+ KK L + +S+ A + P S + +D+ LK +IV+S ND +A+AE +
Sbjct: 75 LRAKKITLEQRLPVSERAWKMPGSRMFIDPKMQVPVDDLLKGMIVQSGNDATMALAEGVG 134
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
T + FV+ MN +K LG+ T + N G+ + GH TTARD+A L+ R+ DFP+YMHY+
Sbjct: 135 GTAENFVRLMNEQAKALGMKNTAYKNPEGLTEPGHTTTARDLATLATRLIQDFPEYMHYY 194
Query: 189 QIKGLEIKGKKYPNTNWAVG---TFLGADGMKTGFTCASGFNIVASAIQG-----DQSLI 240
K +G N+N DG+KTG T A+G+ +VA++ + + L+
Sbjct: 195 STKQYRYEGTPASNSNNRNTLLFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNVGQRRLL 254
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEE-- 295
+++LGA N+R S LL+ G+ K + + + + +
Sbjct: 255 SIVLGAASENSRANESQKLLNWGYTAFDAVKLFDAGQAADTPAVWKGTQSTLKIGRPDAI 314
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
V +T++ + F + I LK ++ +
Sbjct: 315 VVTVPSGSAGKLSTEIVRKDPLIAPFTKGQPIGALKVRLGGE 356
>gi|323177151|gb|EFZ62741.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1180]
Length = 390
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 88/340 (25%), Positives = 148/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASAI G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAIDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + + + + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIWYGDKENIALGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K + + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLNGKELTAPISAHQRVGEI 353
>gi|296116334|ref|ZP_06834950.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii
ATCC 23769]
gi|295977153|gb|EFG83915.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii
ATCC 23769]
Length = 435
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 87/323 (26%), Positives = 139/323 (43%), Gaps = 4/323 (1%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ L + ++D TG V+ E D P+SLTK+MTAYVVF L+ +
Sbjct: 76 SPANSLIGPVDTPARWACIIDYTTGAVLLEKAADERMPPSSLTKMMTAYVVFGMLRAGRL 135
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L +T+S+ A S + + + ++ ++++S ND + +AE + +E +F
Sbjct: 136 KLDQTLTVSEKAWRMQGSKMFVPLQGAVAVSDLIQGMVIQSGNDACIVLAEGVAGSEDQF 195
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MN + LG++ THFMNA G GHY +ARD+ ++ + DFP+Y H+F KG
Sbjct: 196 VSLMNAQAVQLGMTNTHFMNATGWPADGHYMSARDVTTIAMHLIHDFPEYYHFFAEKGFR 255
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N N V + ADG+KTG T A GF + AS+ + ++ I G N R
Sbjct: 256 YNRISQENRNALVVKGI-ADGLKTGHTDAGGFGLCASSERNGNRIVMAINGLPSSNARAF 314
Query: 255 VSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
LL GF N + ++ + VP ++ N
Sbjct: 315 EGERLLEWGFVNFENATLVHNGAVIDSAPVWLGKAATVPLVATRDVLLTLPHGWQNRARI 374
Query: 312 EAKDKESHFIDFEKITLLKNKIT 334
K + +L +
Sbjct: 375 ALDYKSPVPAPIKAGQVLGQLVI 397
>gi|331661996|ref|ZP_08362919.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA143]
gi|315616449|gb|EFU97066.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 3431]
gi|331060418|gb|EGI32382.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA143]
Length = 394
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 1 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 61 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 121 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 181 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 240
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 241 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 300
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 301 WFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 352
>gi|15838821|ref|NP_299509.1| penicillin binding protein 6 precursor [Xylella fastidiosa 9a5c]
gi|9107379|gb|AAF85029.1|AE004035_8 penicillin binding protein 6 precursor [Xylella fastidiosa 9a5c]
Length = 396
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 88/363 (24%), Positives = 163/363 (44%), Gaps = 27/363 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----------------LPYYTLLDTNTGHVIAE 44
M+ +A+ M + + + + ++D +G V+A
Sbjct: 1 MKFLFATVAIFMCAVSSAVAQVPQPVPTKAPAIPIPKAPAPAVAKAWVVMDFASGQVLAG 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-----YPPSNSTFKKG 99
PASLTK+MT+YV+ + +K K + +++NA S S F
Sbjct: 61 ENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGAGTDGSYSGFPVN 120
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
T L++ + +IV+S ND A+A+AE + +E+ F MN+ ++ +G+ +HF++A G+
Sbjct: 121 KTARLEDMEQGMIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGMKNSHFVDATGLS 180
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
GHY++A DMA+L + D P+ Y ++K L + G K N N + DG+KTG
Sbjct: 181 AEGHYSSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLLWRDPSVDGIKTG 240
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF
Sbjct: 241 HTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFETHTLYEPGKVV 300
Query: 280 FYQQNLSNEVPNISEEVCTT------QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
Q+ +V + V + + ++ ++ E+ + + +K +
Sbjct: 301 IKQKIWKGQVSEVQLGVARPLFVTVQRGRYNDLKPSIEVPRNLEAPIKPGQSVGKVKVTL 360
Query: 334 TKK 336
K
Sbjct: 361 DGK 363
>gi|261253676|ref|ZP_05946249.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891]
gi|260937067|gb|EEX93056.1| D-alanyl-D-alanine carboxypeptidase [Vibrio orientalis CIP 102891]
Length = 392
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 92/341 (26%), Positives = 151/341 (44%), Gaps = 12/341 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ ++ + ++ F + A Y L+D ++G V+AE + +PASLTK+MT+
Sbjct: 15 IALSATIATSAFASPIVVPDAPQIAAKGYVLMDFHSGKVLAEKEMNTKLSPASLTKMMTS 74
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV+ L+ L +TISKNA S + G+T+ +++ + +IV+S ND
Sbjct: 75 YVIGQELERGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVEDLNRGIIVQSGNDA 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VA+AE + +E FV MN + +G+ THF N HG+ Y+T DMA+L +
Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNPNLYSTPYDMALLGSALIR 194
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P + K G N N + DG+KTG T +G+++V+SA +G
Sbjct: 195 DVPDEYRIYSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE 294
L+AV++G + N R S LLS GF + + N + +
Sbjct: 255 LVAVVMGTKNANARKSESKKLLSYGFRFFETVAPHKAGETFVEEKIWMGNKDTVALGLDQ 314
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T N +KE K ++ +
Sbjct: 315 DTYVTLPRGQAKNLTASFVLEKE-LEAPIMKGDVVGKLYYQ 354
>gi|271499698|ref|YP_003332723.1| beta-lactamase [Dickeya dadantii Ech586]
gi|270343253|gb|ACZ76018.1| Beta-lactamase [Dickeya dadantii Ech586]
Length = 403
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 149/351 (42%), Gaps = 20/351 (5%)
Query: 2 RQFLVIIAMAMLSNIFPF---------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
++ + +A+ ++ F + + Y L+D N+G V+AE D N
Sbjct: 11 KRIALGTLLAISASTFAYADDINLKTMIPAVPDIDAEAYILIDYNSGKVLAEKNADARRN 70
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS------EYPPSNSTFKKGSTMTLDN 106
PASLTK+MT+YV+ +K K +TI K+A S K G + +
Sbjct: 71 PASLTKMMTSYVIGQAIKAGKITPNDVVTIGKDAWATGNPDFQGSSLMFLKPGDRVPVYL 130
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
K +I++S ND VA+A+ + ++ FV MN K LGL T+F HG+ G Y++
Sbjct: 131 LNKGIILQSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLQNTNFKTVHGLDAEGQYSS 190
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
ARDMA++ + D P ++ K + N N + L DG+KTG T ++G
Sbjct: 191 ARDMALIGQALIRDVPDEYATYKEKEFTFNNIRQLNRNGLLWDSSLAVDGIKTGHTASAG 250
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+VASA +G LI+ ++G R S LL+ GF + + +
Sbjct: 251 YNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVAPLKTGKEFASEPVW 310
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
N + ++V T + + K ++
Sbjct: 311 FGNSDRVSLGVDKDVYITIPRGRMKDLKASYVLTNSELHAPLAKNQVVGTI 361
>gi|27379630|ref|NP_771159.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110]
gi|27352782|dbj|BAC49784.1| penicillin binding protein [Bradyrhizobium japonicum USDA 110]
Length = 451
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 85/316 (26%), Positives = 145/316 (45%), Gaps = 12/316 (3%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
P L++ ++G V+ E D P+S+ KLMTA VVF+ +++ LT IS+NA
Sbjct: 89 DAPTAILIEASSGSVLFEKNADELRAPSSMMKLMTAEVVFNAIQKGDIKLTDEYRISENA 148
Query: 87 SEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV-QHMNN 140
S S +++D+ L I++S ND +A+AE++ E+ F M
Sbjct: 149 WRKGGAPSGGSTMFAAINSKVSVDDLLHGAIIQSGNDACIALAEAMAGNERIFAADFMTK 208
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
++ LG++ + F N++G+ G+ T R++ IL+ I DFP++ F K +
Sbjct: 209 RARELGMTKSTFGNSNGLPDPGNKMTVRELGILARHIILDFPEFYKLFGEKEYTWNKIRQ 268
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
PN N + + GADG+KTG+T G+ +V SA+Q LI V+ G D R + +L
Sbjct: 269 PNRNPLLNSMEGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKML 328
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNE------VPNISEEVCTTQKEIINYNTQMKEAK 314
GF N R I Y + E + +V + ++ +
Sbjct: 329 EWGFRNFETRTLIAADQPVGYAKVFGGESRSVKLIAKTPVKVMVHKNGSDKLIARVVYSG 388
Query: 315 DKESHFIDFEKITLLK 330
+ +K+ ++K
Sbjct: 389 PVRAPVEAGQKVGVVK 404
>gi|291616674|ref|YP_003519416.1| DacA [Pantoea ananatis LMG 20103]
gi|291151704|gb|ADD76288.1| DacA [Pantoea ananatis LMG 20103]
Length = 418
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 87/352 (24%), Positives = 150/352 (42%), Gaps = 20/352 (5%)
Query: 1 MRQFLV--IIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ V +IA ++ + Y L+D N+G V+AE D
Sbjct: 25 LKRLTVGSLIAFSLSHAAIADDVNLKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARR 84
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ ++A K G + +
Sbjct: 85 DPASLTKMMTSYVIGQAVKAGKIHQDDIVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVS 144
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++++S ND VA+A+ + ++ FV MNN K LGL THF HG+ G Y+
Sbjct: 145 QLTRGIVLQSGNDACVAMADYVAGSQDAFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYS 204
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P+ ++ K + N N T L DG+KTG T ++
Sbjct: 205 SARDMALIGQALIRDVPEEYAVYKEKEFTFNNIRQMNRNGLLWDTSLTVDGIKTGHTASA 264
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 265 GYNLVASATEGQMRLISAVMGGHTFKGRETESKKLLTWGFRFFETVAPLKAGKEFASEPV 324
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N + ++ T + + +K ++ +
Sbjct: 325 WFGNSDRVQLGVEKDAYLTIPRGRMKDLKASYVLTNTELHAPLKKNQVVGSI 376
>gi|27363759|ref|NP_759287.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
gi|320157161|ref|YP_004189540.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
gi|27359875|gb|AAO08814.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus CMCP6]
gi|319932473|gb|ADV87337.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus MO6-24/O]
Length = 393
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 90/331 (27%), Positives = 148/331 (44%), Gaps = 9/331 (2%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+S + A + L+D ++G V+AE + +PASLTK+MT+YV+ L+
Sbjct: 26 VSAAPVVVPDAPQIAAKGFVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELERG 85
Query: 73 KAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L + +SKNA S + G+T+ + + + +I++S ND VA+AE +
Sbjct: 86 NISLEDDVVVSKNAWAKNFPDSSKMFIEVGTTVKVKDLNRGIIIQSGNDACVAMAEHIAG 145
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+E FV MN + ++G++ THF N HG+ Y+T DMA+L + D P +
Sbjct: 146 SEDAFVDLMNAWASSIGMTNTHFANVHGLDNANLYSTPYDMALLGQALIRDVPDEYRIYS 205
Query: 190 IKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ G N N + DG+KTG T +G+++V+SA +G LIAV++G D
Sbjct: 206 EQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLIAVVMGTKD 265
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEII 304
N R S LLS GF + + N ++E+ T
Sbjct: 266 MNARKSESKKLLSYGFRFFETVAPHKAGETFVEEKIWMGNKDTLALGVNEDTYVTLPRGQ 325
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
N +KE +K ++ +
Sbjct: 326 AKNLTASFVLEKE-LQAPIKKGDVVGKLYYQ 355
>gi|254464797|ref|ZP_05078208.1| D-alanyl-D-alanine carboxypeptidase protein [Rhodobacterales
bacterium Y4I]
gi|206685705|gb|EDZ46187.1| D-alanyl-D-alanine carboxypeptidase protein [Rhodobacterales
bacterium Y4I]
Length = 555
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 105/295 (35%), Positives = 159/295 (53%), Gaps = 2/295 (0%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+FL A +L+ + +L+ P ++D TG V+ + D +PASLTK+MT
Sbjct: 18 RFLWAAAGILLAVLGLWLAPQRAQAAPYAAMVIDARTGEVLHSSNADTRLHPASLTKMMT 77
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
Y+ F ++ + L T + IS+NA+ PPS K G + ++ VKSAND A
Sbjct: 78 LYIAFEAVRNGEITLDTKVKISRNAAAEPPSKLGLKPGQRIAFRYLIRAAAVKSANDAAT 137
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
AI E+L +E F + MN T+K LG++ T F NAHG+ GH +TA DM L + D+
Sbjct: 138 AIGETLSGSEAAFTRRMNRTAKALGMTRTTFKNAHGLTASGHLSTASDMTTLGRHLLYDY 197
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P+Y + F + + ++ PNTN + + GADG+KTG+T A+GFN+VASA +GD+ +I
Sbjct: 198 PEYYNLFSRRSTDAGIREVPNTNRRLLAAYRGADGIKTGYTRAAGFNLVASAKRGDERII 257
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
A + G +RN A LL +GF R + + YQ + V +E
Sbjct: 258 ATVFGGKSSTSRNAKVAELLDLGFRRAPSRAALRKPQRPAYQGAGNIVVAEADDE 312
>gi|78067705|ref|YP_370474.1| penicillin-binding protein 6 [Burkholderia sp. 383]
gi|77968450|gb|ABB09830.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Burkholderia sp. 383]
Length = 437
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 14/342 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ P + L+D + V+A D PASLTKLMTAY+VF
Sbjct: 62 FTGAPATYMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEA 121
Query: 69 LKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L +KK + +T S+ S + +++ + + +I++S ND A+A+AE
Sbjct: 122 LDKKKISMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAEL 181
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E +FV MN+ + LG+ THF + +G+ HYTTA D+A LS + DFPQY
Sbjct: 182 VGGSEGQFVTLMNDEAARLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYS 241
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLI 240
F K + + N N + DG+KTG T A+G+ ++ASA + G + L+
Sbjct: 242 IFSEKEFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLV 301
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE- 295
+V++G R + S +L+ G+ + Y+ + + +
Sbjct: 302 SVMMGEQKEGERTQDSMKMLNYGYSAFDSVRLFKGGQAMSTPRIYKGKENTVQVGVKGDQ 361
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ T++ + + +++ +K K
Sbjct: 362 WATVPRGLGDKIKTEVDVNAPLIAPLAEGQQVGTVKIVADGK 403
>gi|149914154|ref|ZP_01902685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Roseobacter sp. AzwK-3b]
gi|149811673|gb|EDM71506.1| Serine-type D-Ala-D-Ala carboxypeptidase [Roseobacter sp. AzwK-3b]
Length = 388
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 83/328 (25%), Positives = 149/328 (45%), Gaps = 8/328 (2%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + A + + D TG V+ D P PAS++KLMT YV F +++ +
Sbjct: 14 VIVLVSPAAAFDTRATSAFVFDMKTGTVLLSKNADAPLPPASMSKLMTLYVTFEAIRDGR 73
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT--E 131
L + +S++A + S + +++ L+ +IV S ND V +AE+L E
Sbjct: 74 LSLDDRLPVSQHAMSFGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACVVLAEALSPDGTE 133
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ F ++M ++ +G++ + FMN+ G GH + RD+A+LS I DFP++ F
Sbjct: 134 QGFARYMTQRAQQMGMTNSTFMNSSGWPAAGHRMSMRDLALLSRHIIEDFPEFYPMFAET 193
Query: 192 GLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
E + N N +G +GADG+KTG T +G+ +V SA QGD+ +I VI G
Sbjct: 194 KFEFDGRAPQNTRNRNPILGLGIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVISGLET 253
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEEVCTTQKEIIN 305
R R + S ++++ F ++ + ++ + V S +T ++
Sbjct: 254 RQARAEESEAIVNWSFRQFVEKSVVKAGVEVARADVWMGDATSVGLTSASDISTLMPVLA 313
Query: 306 YNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ E + + L +
Sbjct: 314 EDRVEGEVVYQGPVHAPIKAGDQLAELV 341
>gi|149201815|ref|ZP_01878789.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. TM1035]
gi|149144863|gb|EDM32892.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. TM1035]
Length = 387
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 84/340 (24%), Positives = 148/340 (43%), Gaps = 10/340 (2%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ + IA A L + A ++D TG V+ + D P PAS++KLMT
Sbjct: 2 RLIRHIAAATLCLGVALPAQAFETSAKAAYVMDVTTGTVLLDKNADTPMPPASMSKLMTL 61
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
YV F ++ + L + +S++A Y S + +++ L+ +IV S ND
Sbjct: 62 YVAFEAVRSGRLTLDERLPVSQHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAV 121
Query: 123 IAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
IAE+L E F + M ++ +G++ + F NA G GH + RD+A+L+ I D
Sbjct: 122 IAEALSPDGTEAGFARFMTQRAQQMGMTNSIFRNASGWPAEGHVMSMRDLALLARHIIED 181
Query: 181 FPQYMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
FP++ F N N +G +GADG+KTG T +GF + SA QG++
Sbjct: 182 FPEFYPMFAETEFRFDGRAPSNISNRNPLLGLGIGADGLKTGHTEQAGFGLTGSAKQGER 241
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNIS 293
++ VI G R + S S+++ F ++ + + + ++ ++
Sbjct: 242 RVVFVISGLATAQDRARESESIVNWAFRQFAEKSVLTAGEEVARAAVWMGEATSVGLTVA 301
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
E+V T + + + K +L +
Sbjct: 302 EDVSTLLPVLDGGELKGEVV-YTGPVRAPVAKGDVLAELV 340
>gi|163803893|ref|ZP_02197734.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4]
gi|159172307|gb|EDP57194.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. AND4]
Length = 392
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 93/341 (27%), Positives = 148/341 (43%), Gaps = 12/341 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + + F + A Y L+D N+G V+AE + +PASLTK+MT+
Sbjct: 15 VALSATIAQSAFASPVVVPDAPQIAAKGYVLMDYNSGKVLAEKEMNTKLSPASLTKMMTS 74
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV+ L +TISKNA S + G+T+ + + + +I++S ND
Sbjct: 75 YVIGQELARGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVHDLNRGIIIQSGNDA 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VA+AE + +E FV MN + +G+ THF N HG+ Y+T DMA L +
Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWADTIGMKNTHFANVHGLDNPNLYSTPYDMAQLGKALIR 194
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P + K G N N + DG+KTG T +G+++V+SA +G
Sbjct: 195 DVPDEYRIYSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE 294
L+AV++G D N R S LLS GF + + N + +
Sbjct: 255 LVAVVMGTKDANARKSESKKLLSYGFRFFETVAPHKAGETFVEEKVWMGNKDTVALGLDQ 314
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T N + +KE +K ++ +
Sbjct: 315 DTYVTLARGEAKNLKASFVLEKE-LEAPIQKGDVVGKLYYQ 354
>gi|90412590|ref|ZP_01220592.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
profundum 3TCK]
gi|90326398|gb|EAS42810.1| putative D-alanyl-D-alanine carboxypeptidase [Photobacterium
profundum 3TCK]
Length = 399
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 91/343 (26%), Positives = 150/343 (43%), Gaps = 14/343 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
++ + + M S F + + L+ +G VIA + P PASL
Sbjct: 7 LKHLSLFTLVTMASLPFSASADVLPSPPVIDAKAWLLMSYESGQVIASFNENEPLAPASL 66
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TK+MT+YVV + + IS+NA S G +T+D K +I+
Sbjct: 67 TKIMTSYVVGKEINAGHINNDDLVIISENAWGKKFPGSSKMFLNIGDNVTVDQLNKGVII 126
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND VA+AE + + F++ MN ++ +G+ T+F N HG+ +TTA DMAIL
Sbjct: 127 SSGNDATVALAEHVAGHQAAFIEMMNRQAEVIGMQNTYFTNPHGLDADEQFTTAYDMAIL 186
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA 232
+ + + P+ F+ K + K N N T L DG+KTG T +G+++V+SA
Sbjct: 187 TRALIKELPEMYGLFKEKSFTFQDIKQGNRNGLLWDTTLNVDGVKTGHTSKAGYSLVSSA 246
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
Q Q IAV++G TR S LL+ GF D + + +
Sbjct: 247 EQSGQRFIAVVMGTKSTGTRRSESKKLLTWGFRFYQDLTPTFDGKELEPIKVWYGSPSKV 306
Query: 293 SEE------VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
S E + +++ N ++ + E+ E++ +
Sbjct: 307 SVELGDGGIITVPRRQRKNLEHKVFYNNNLEAPISKGEQVGKI 349
>gi|37679087|ref|NP_933696.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
gi|37197829|dbj|BAC93667.1| D-alanyl-D-alanine carboxypeptidase [Vibrio vulnificus YJ016]
Length = 393
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 90/331 (27%), Positives = 148/331 (44%), Gaps = 9/331 (2%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+S + A + L+D ++G V+AE + +PASLTK+MT+YV+ L+
Sbjct: 26 VSAAPIVVPDAPQIAAKGFVLMDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQELERG 85
Query: 73 KAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L + +SKNA S + G+T+ + + + +I++S ND VA+AE +
Sbjct: 86 NISLEDDVVVSKNAWAKNFPDSSKMFIEVGTTVKVKDLNRGIIIQSGNDACVAMAEHIAG 145
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+E FV MN + ++G++ THF N HG+ Y+T DMA+L + D P +
Sbjct: 146 SEDAFVDLMNAWASSIGMTNTHFANVHGLDNANLYSTPYDMALLGQALIRDVPDEYRIYS 205
Query: 190 IKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ G N N + DG+KTG T +G+++V+SA +G LIAV++G D
Sbjct: 206 EQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMRLIAVVMGTKD 265
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEII 304
N R S LLS GF + + N ++E+ T
Sbjct: 266 MNARKSESKKLLSYGFRFFETVAPHKAGETFVEEKIWMGNKDTLALGVNEDTYVTLPRGQ 325
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
N +KE +K ++ +
Sbjct: 326 AKNLTASFVLEKE-LQAPIKKGDVVGKLYYQ 355
>gi|332094304|gb|EGI99355.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 5216-82]
Length = 403
Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPDVPQIDAESYILIDYNSGKVLAEQNADVRR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVY 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVTPLKVGKEFASEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 310 WFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 361
>gi|126729339|ref|ZP_01745153.1| D-alanyl-D-alanine carboxypeptidase [Sagittula stellata E-37]
gi|126710329|gb|EBA09381.1| D-alanyl-D-alanine carboxypeptidase [Sagittula stellata E-37]
Length = 393
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 82/343 (23%), Positives = 143/343 (41%), Gaps = 8/343 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR+ + A + + + A K ++D TG V+ D PAS++KLM
Sbjct: 1 MRKTTRRLLAAGTAILLATQAAAFDTKATAAHVIDVTTGTVLLAKNADEAVPPASMSKLM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F +++ + L + +S++A Y S + +++ L+ +IV S ND
Sbjct: 61 TLYITFEAIRDGRLSLDERLPVSEHAMSYTGSTMFLNTKDRIRVEDLLRGIIVLSGNDAC 120
Query: 121 VAIAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+AE+L E F + M + LG++ + F NA G GH + RD+ +L+ I
Sbjct: 121 AVLAEALSPDGTEAGFARLMTQRAHQLGMTNSTFKNASGWPADGHVMSMRDLTLLALHII 180
Query: 179 TDFPQYMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
DFP++ F K E N N + +GADG+KTG T +G+ +V SA
Sbjct: 181 QDFPEFYPMFGEKKFEFDGRAPSNVNNRNPLLSLNIGADGLKTGHTQEAGYGLVGSAKND 240
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNI 292
+ +I + G R + S ++++ F ++ + I + + V +
Sbjct: 241 QRRIIFAMTGLATAGERAEQSEAIVNWAFRQFAEQTIVKKDQPITQAELWLGAQDHVDLV 300
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
SE+ T + E K L I +
Sbjct: 301 SEKDITLLLPTMTAGGVTAEVVYTGPIQAPVNKGQRLAELIIQ 343
>gi|167568588|ref|ZP_02361462.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
oklahomensis C6786]
Length = 378
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 84/332 (25%), Positives = 148/332 (44%), Gaps = 15/332 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D + V+A D PASLTKLMTAY+VF L KK
Sbjct: 7 ATYAPGAVPPPGVNARSWVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 66
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 67 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 126
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN ++ LG++ THF + +G+ HYTTA D+A LS + D+P Y F +K
Sbjct: 127 AQFVNMMNAEAQRLGMTGTHFADVNGMPDPQHYTTAGDLAKLSTHLIRDYPDYYSIFSVK 186
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++
Sbjct: 187 DFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDATRRLVTVMM 246
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCT 298
G + R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 247 GETKESDRVQDSMKMLNYGYTAFDSVRLYKAGQAIDTPRVYKGKSNNVQVGVKKDQFITV 306
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 307 PRGMADKVKPEVALNAPLIAPLADGQAVGSVK 338
>gi|269960275|ref|ZP_06174649.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834886|gb|EEZ88971.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 388
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 9/338 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+++ + + Y L+D +G +IAE PASLTKLMTAYVV
Sbjct: 13 LLLQTISAPALAVVTPNPPQLQAKGYVLMDFQSGAIIAEQNARAGLAPASLTKLMTAYVV 72
Query: 66 FSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+K + +T+S+NA S + +T+ N ++ +I++S ND VA
Sbjct: 73 GQEIKSGRLQWDDKVTVSENAWSAKFPDSSKMFIQPKDEITVANLMRGVIIQSGNDACVA 132
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +E FV MN + L L+ T+F+N+HG+ G T+ DMA L I D P
Sbjct: 133 LAEHVAGSEGAFVALMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATLMQSIINDVP 192
Query: 183 QYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + K + N N + DG KTG+T +G+++V+SA QG LI+
Sbjct: 193 EVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSAKQGKMRLIS 252
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVC 297
V++G + +R S +LLS GF ++ ++ ++S +++
Sbjct: 253 VVMGTPSKQSRISQSKNLLSYGFRFYDTKQVAKQGEVQASAKVWKGDVSEIDLGFAQDAY 312
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T + + E K ++ + K
Sbjct: 313 LTLPRSLTAGLDKSVVVN-EPLIAPIAKGDVVGKVVWK 349
>gi|116690911|ref|YP_836534.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
HI2424]
gi|170734237|ref|YP_001766184.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
MC0-3]
gi|116649000|gb|ABK09641.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Burkholderia cenocepacia HI2424]
gi|169817479|gb|ACA92062.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
MC0-3]
Length = 436
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 14/342 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ P + L+D + V+A D PASLTKLMTAY+VF
Sbjct: 61 FTGAPATYMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEA 120
Query: 69 LKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L +KK + +T S S + +++ + + +I++S ND A+A+AE
Sbjct: 121 LDKKKISMEQIVTPSDAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAEL 180
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E +FV MN+ + LG+ THF + +G+ HYTTA D+A LS + DFPQY
Sbjct: 181 VGGSEGQFVTMMNDEAGRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYS 240
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLI 240
F K + + N N + DG+KTG T A+G+ ++ASA + G + L+
Sbjct: 241 IFSEKEFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLV 300
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE- 295
+V++G + R + S +L+ G+ + Y+ + + +
Sbjct: 301 SVMMGEQKESERTQDSMKMLNYGYSAFDSVRLFKGGQAISTPRIYKGKDNTVQVGVKGDQ 360
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ T++ + + +++ +K K
Sbjct: 361 WATVPRGLGDKVKTEVDVNAPLIAPLAEGQQVGTVKIVADGK 402
>gi|91224062|ref|ZP_01259325.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
gi|91190973|gb|EAS77239.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
Length = 390
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 97/333 (29%), Positives = 143/333 (42%), Gaps = 9/333 (2%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
++ + A Y L+D +TG V+ E NPASLTKLMTAYV +
Sbjct: 21 SLAYAAPSVVPNAPELSSRGYVLMDFHTGKVLVERDAHKRLNPASLTKLMTAYVAGQEIN 80
Query: 71 EKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L + IS+NA S + ++++L + + LIV+S ND +VAIAE +
Sbjct: 81 TGNITLNDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLIVQSGNDASVAIAEYV 140
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E FV MN+ + L LS T F N HG+ G Y+T D+A L I D P
Sbjct: 141 AGSESGFVSLMNSWAAKLELSNTAFTNPHGLDSDGLYSTPYDIAKLGQAIIRDLPDIYPL 200
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ G N N + DGMKTG+T +G+++ SAIQGD LIAV++GA
Sbjct: 201 YSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSAIQGDMRLIAVVMGA 260
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKE 302
N R S LLS GF + + ++ +V T +
Sbjct: 261 KSENVRESESKQLLSYGFRFYDTVMPTEAGAELAKARVWMGEKDELTVGVANDVYLTLPK 320
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
N Q + + + ++ + K
Sbjct: 321 GDVKNLQAEV-EYNGDLVAPISEQQVVGKVLYK 352
>gi|262041277|ref|ZP_06014488.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259041393|gb|EEW42453.1| D-alanyl-D-alanine carboxypeptidase DacA [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 423
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 88/350 (25%), Positives = 150/350 (42%), Gaps = 19/350 (5%)
Query: 2 RQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
R + +++A LS+ + A + L+D N+G V+AEN D +P
Sbjct: 32 RLLITALSVAALSSAARADDLNIKTMIPGAPQIDAESWILIDYNSGKVLAENNADSRRDP 91
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNA 107
ASLTK+MT+YV+ +K K + +T+ +A K G + +
Sbjct: 92 ASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQL 151
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
++ + ++S ND VA+A+ + ++ FV MNN LGL THF HG+ G Y++A
Sbjct: 152 IRGINLQSGNDACVAMADYVAGSQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSA 211
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGF 226
RDMA++ + D P ++ K G + N N + DG+KTG T +G+
Sbjct: 212 RDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGY 271
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQ 282
N+VASA +G LI+ ++G R S LL+ GF I + +
Sbjct: 272 NLVASATEGQMRLISAVMGGRTFKGRESESKKLLTWGFRFFETVNPIKAGKEFASEPAWF 331
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++V T + + + +K ++
Sbjct: 332 GDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNNTELHAPLQKNQVVGTI 381
>gi|331653434|ref|ZP_08354435.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli M718]
gi|331048283|gb|EGI20359.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli M718]
Length = 390
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 87/340 (25%), Positives = 148/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNI 292
+ LI+V++GA R + + LL G N T + + + + + N
Sbjct: 254 RRLISVVMGADSAKGREEEAKKLLRWGQQNFTTVQILHRRKKVGTERIWYGDKENIALGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 353
>gi|311280463|ref|YP_003942694.1| Beta-lactamase [Enterobacter cloacae SCF1]
gi|308749658|gb|ADO49410.1| Beta-lactamase [Enterobacter cloacae SCF1]
Length = 399
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 86/350 (24%), Positives = 148/350 (42%), Gaps = 19/350 (5%)
Query: 2 RQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
R + +++A LS+ + Y L+D N+G V+AE D +P
Sbjct: 8 RLLITALSVAALSSAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDP 67
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNA 107
ASLTK+MT+YV+ +K K + +T+ +A K G + +
Sbjct: 68 ASLTKMMTSYVIGQAMKAGKFKDSDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQL 127
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
++ + ++S ND VA+A+ + ++ FV MNN LGL THF HG+ G Y++A
Sbjct: 128 IRGINLQSGNDACVAMADYVAGSQDAFVGLMNNYVNALGLKNTHFQTVHGLDADGQYSSA 187
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGF 226
RDMA++ + D P ++ K G + N N + DG+KTG T +G+
Sbjct: 188 RDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGY 247
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQ 282
N+VASA +G L++ ++G R S LL+ GF + + +
Sbjct: 248 NLVASATEGQMRLVSAVMGGRTYKGRETESKKLLTWGFRFFETVSPLKAGKEFASEPAWF 307
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
N + ++V T + + + +K ++
Sbjct: 308 GNTDRASLGVDQDVYLTIPRGRMKDLKASYVLNSTELHAPLQKNQVVGTI 357
>gi|297616714|ref|YP_003701873.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
lipocalidus DSM 12680]
gi|297144551|gb|ADI01308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
lipocalidus DSM 12680]
Length = 381
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 85/339 (25%), Positives = 148/339 (43%), Gaps = 10/339 (2%)
Query: 2 RQFLVIIA-MAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ L ++A + S FP + + Y L+D ++G V+ PAS+TK
Sbjct: 5 KRLLWLMAWVLFFSLAFPTTAWGAVVDVEADSYVLMDADSGKVLLAKNEHKRLPPASMTK 64
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMT + L + K L + S+NA + S + G MT ++ + + V SAND
Sbjct: 65 LMTLILAMEDLYKGKVDLKEKVVASENAWKLGGSQIYLEPGEEMTFEDMVIAIAVGSAND 124
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
VA+AE L + ++FV+ MN +K L L THF+NA+G+ HY++A D+A+++
Sbjct: 125 ACVAVAEHLDGSHEEFVKRMNAKAKELRLKDTHFVNAYGLPDPDHYSSAYDLALMARYAL 184
Query: 179 TDFP-QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ L K NTN + + G DG KTG+T + F +V++A +
Sbjct: 185 CYPKLLEFTSIKEYNLRQGEFKLYNTNKLLWHYPGTDGFKTGWTNEAKFCLVSTAKRNGL 244
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
LI V++ + + + S L + GF R + + +
Sbjct: 245 RLICVVMASPQKGGNFRDSMKLFNYGFAKYAYRSFFAPQSQCGLVSVGKGTNDRVEAICT 304
Query: 294 EEV--CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+EV + E N + ++ +K+ +K
Sbjct: 305 QEVGASCLKGEEKNITYKRSLVDYIDAPVKKGQKLGEIK 343
>gi|206577494|ref|YP_002239713.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
342]
gi|288936555|ref|YP_003440614.1| beta-lactamase [Klebsiella variicola At-22]
gi|290510389|ref|ZP_06549759.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
gi|206566552|gb|ACI08328.1| serine-type D-Ala-D-Ala carboxypeptidase [Klebsiella pneumoniae
342]
gi|288891264|gb|ADC59582.1| Beta-lactamase [Klebsiella variicola At-22]
gi|289777105|gb|EFD85103.1| D-alanyl-D-alanine carboxypeptidase [Klebsiella sp. 1_1_55]
Length = 399
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 88/350 (25%), Positives = 150/350 (42%), Gaps = 19/350 (5%)
Query: 2 RQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
R + +++A LS+ + A + L+D N+G V+AEN D +P
Sbjct: 8 RLLITALSVAALSSAARADDLNIKTMIPGAPQIDAESWVLIDYNSGKVLAENNADSRRDP 67
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNA 107
ASLTK+MT+YV+ +K K + +T+ +A K G + +
Sbjct: 68 ASLTKMMTSYVIGQAMKAGKFKESDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQL 127
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
++ + ++S ND VA+A+ + ++ FV MNN LGL THF HG+ G Y++A
Sbjct: 128 IRGINLQSGNDACVAMADYVAGSQDAFVSLMNNYVNALGLKNTHFQTVHGLDADGQYSSA 187
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGF 226
RDMA++ + D P ++ K G + N N + DG+KTG T +G+
Sbjct: 188 RDMALIGQALIRDVPNEYSIYREKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGY 247
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQ 282
N+VASA +G LI+ ++G R S LL+ GF I + +
Sbjct: 248 NLVASATEGQMRLISAVMGGRTFKGRESESKKLLTWGFRFFETVNPIKAGKEFASEPAWF 307
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++V T + + + +K ++
Sbjct: 308 GDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNNTELHAPLQKNQVVGTI 357
>gi|117619099|ref|YP_857750.1| penicillin-binding protein [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117560506|gb|ABK37454.1| penicillin-binding protein [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 396
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 96/359 (26%), Positives = 148/359 (41%), Gaps = 24/359 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENY 46
M +F + +A L + A + L+D +G V+AE
Sbjct: 1 MSKFARSVILASLISATAQANTPVPTPNANPVVVPAAPEISAKAHILIDYYSGQVLAEQN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMT 103
+ PASLTK+MT+Y++ L + T +TIS+NA S + G ++
Sbjct: 61 AEERLPPASLTKMMTSYIIGQELLKGNIKRTDMVTISQNAWSKNYSDSSKMFIEVGKQVS 120
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+D+ K +I++S ND VA+AE L + F MN+ + LG++ +HFMN HG+ GH
Sbjct: 121 VDDLNKGIIIQSGNDACVAMAEFLAGSTDSFASLMNSWAAKLGMNDSHFMNPHGLDAEGH 180
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTC 222
Y+TA DMA L + D P + K G N N L DG+KTG
Sbjct: 181 YSTAHDMARLGQALIRDLPDEYKIYAQKSFVFNGITQHNRNRLLWDQSLQVDGIKTGHVS 240
Query: 223 ASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK--- 278
G+N+V+SA LIAV+LGA +R S LL+ GF +
Sbjct: 241 QVGYNLVSSATNNEGMRLIAVVLGASSEASRAAESKKLLTYGFRFFQSLTPYKAGTELVT 300
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + S + ++V N + + E K + K+
Sbjct: 301 QKIWMGDKSEVKLGVDKDVSVLVTRGQGNNLKADFQLESE-LKAPLAKGQRVGTVFLKQ 358
>gi|205353205|ref|YP_002227006.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205272986|emb|CAR37933.1| penicillin-binding protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|326628291|gb|EGE34634.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 390
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 151/349 (43%), Gaps = 21/349 (6%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + + LL G N + ++ K +
Sbjct: 245 LIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIWYG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEKITLL 329
+ ++ + + + K K+ E+ +++ +
Sbjct: 305 DKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQRVGEI 353
>gi|89099052|ref|ZP_01171931.1| DacF [Bacillus sp. NRRL B-14911]
gi|89086182|gb|EAR65304.1| DacF [Bacillus sp. NRRL B-14911]
Length = 371
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 82/318 (25%), Positives = 136/318 (42%), Gaps = 8/318 (2%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ L++ +TG V+ E + PAS+TK+MT ++ + + K + I S+ A
Sbjct: 18 NVKSAILIERDTGAVLYEQNSNEQLPPASMTKIMTMLLIMEAIDKGKLSMDEKIRASEYA 77
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ S + G MT + LK + + S ND +VA+AE L +E++FV+ MN +K+LG
Sbjct: 78 ASMGGSQIFLEPGEEMTTEQMLKGIAIGSGNDASVAMAERLAGSEEEFVKLMNKKAKDLG 137
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPN 202
L T F NA G+ HY+TA DMA+++ + + ++ K N
Sbjct: 138 LKDTIFKNATGLPVTEHYSTAHDMALMAKELLKYEGITKFTGTYEAYLREDTDKKFWLVN 197
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
TN V + G DG+KTGFT + + + A+A + +IAV+ GA RN +L
Sbjct: 198 TNRLVRFYPGVDGLKTGFTNEAKYCLTATAEKNGMRVIAVVFGAPTSKERNAQVTKMLDY 257
Query: 263 GFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
F + + SE + K+ + K K+
Sbjct: 258 AFSQYETHPMYKRNEALGSAKVSKGEIKQVEALTSEPISLLTKKGEDTKAVKKTVVLKKD 317
Query: 319 HFIDFEKITLLKNKITKK 336
K + +K
Sbjct: 318 LKAPIAKGDQIGTLKVEK 335
>gi|326391076|ref|ZP_08212623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
ethanolicus JW 200]
gi|325992861|gb|EGD51306.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
ethanolicus JW 200]
Length = 379
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 88/352 (25%), Positives = 155/352 (44%), Gaps = 25/352 (7%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++F++ I + +S++ + + ++D TG V+ E AS TK
Sbjct: 1 MKKFILYLFILLYFMSSVKVYAESYPSISAKAAIVMDQETGRVLYEKNSHEKLPMASTTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT V L +T+SK A+ S+ G + +++ L L++ S ND
Sbjct: 61 IMTLLVALEK-----GNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLFGLMLNSGND 115
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176
A AIAE + + + FV+ MN +K +G THF+ G+ HYTTA D+A+++
Sbjct: 116 AATAIAEHIGGSVESFVEIMNQKAKEIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 175
Query: 177 IKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+P++ K I + N N + + GADG+KTGFT +G +V+
Sbjct: 176 -AFRYPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 234
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK------KINYIIKDFYQQN 284
SA + + IAV+L + + S +L F K I + + ++N
Sbjct: 235 SATREGRRFIAVVLNSP---PMWEDSMKILDYAFSKYKPYKVLEKGELIKKVKVEGGKEN 291
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ V + + ++E N N + K ++ EKI + KI ++
Sbjct: 292 TVSVVSEKACVIPALEEEKQNVNLEFYLPKSVKAPVEKGEKIGYVTVKIGEE 343
>gi|320668144|gb|EFX35013.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
LSU-61]
Length = 388
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 93/351 (26%), Positives = 153/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG + N
Sbjct: 1 MKRRLIIAASLFIFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQIFTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|20807777|ref|NP_622948.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
tengcongensis MB4]
gi|20516333|gb|AAM24552.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
tengcongensis MB4]
Length = 380
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 86/352 (24%), Positives = 150/352 (42%), Gaps = 24/352 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M+++ ++ + M F + S + ++D NTG V+ E AS TK
Sbjct: 1 MKKYFSLLLILMFFVTFSKVYGSDIPSVSAKAAIVMDQNTGRVLYEKNAHLKLPMASTTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + + L +T+S+ A+ S+ G + +++ L +++ S ND
Sbjct: 61 IMTLLIALE-----RGNLNDIVTVSQKAASVGGSSIWLSPGEKIDMESLLYGIMLNSGND 115
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176
A AIAE + T + FV+ MN +K +G THF+ G+ HYTTA D+A+++
Sbjct: 116 AATAIAEHIGGTVENFVEMMNQKAKEIGAYNTHFVTPSGLDIGIDDHYTTAYDLALITRY 175
Query: 177 IKTDFPQYMHYFQIKGLEIK------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
++P++ K I + N N + + GADG+KTGFT +G +V+
Sbjct: 176 AFLNYPKFAEIVSTKEKTIPCEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 235
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
SA + + IAV+L + + S +L F K + ++
Sbjct: 236 SATREGRRFIAVVLNSP---PMWEDSMKILDYAFSRFKPFKVFERNDVVKKVKVEKGKIE 292
Query: 291 NISEEVCTT------QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
I V ++EI N + E+ EKI + KI ++
Sbjct: 293 EIEVAVEKDCIIPVSEEEIGKVNLEFHIPDKLEAPIKKGEKIGHVVVKIGEE 344
>gi|300715824|ref|YP_003740627.1| penicillin-binding protein 5 [Erwinia billingiae Eb661]
gi|299061660|emb|CAX58776.1| Penicillin-binding protein 5 [Erwinia billingiae Eb661]
Length = 403
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 89/352 (25%), Positives = 148/352 (42%), Gaps = 20/352 (5%)
Query: 1 MRQFLV--IIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ +IA+++ S + Y L+D N+G V+AE D
Sbjct: 10 IKRLTAGSLIALSLTSFAHADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ K+A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAVKAGKIKQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVAVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++++S ND VA+A+ + ++ FV MNN K LGL THF HG+ G Y+
Sbjct: 130 ELTRGIVLQSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P ++ K + N N T L DG+KTG T A+
Sbjct: 190 SARDMALIGRALIRDVPDEYAVYKEKEFTFNNIRQMNRNGLLWDTSLQVDGIKTGHTEAA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAGKEFASEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++V T + + K ++
Sbjct: 310 WFGTSDRVQLGVEKDVFLTIPRGRMKDLKASYTLSNTELHAPLAKNQVVGTI 361
>gi|167551002|ref|ZP_02344757.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|168242129|ref|ZP_02667061.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168466288|ref|ZP_02700158.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|168818250|ref|ZP_02830250.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194445713|ref|YP_002041329.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194448664|ref|YP_002046110.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|207857497|ref|YP_002244148.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|194404376|gb|ACF64598.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194406968|gb|ACF67187.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|195631235|gb|EDX49795.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|205324074|gb|EDZ11913.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205338413|gb|EDZ25177.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205345154|gb|EDZ31918.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|206709300|emb|CAR33640.1| penicillin-binding protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
Length = 390
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 151/349 (43%), Gaps = 21/349 (6%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + + LL G N + ++ K +
Sbjct: 245 LIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIWYG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEKITLL 329
+ ++ + + + K K+ E+ +++ +
Sbjct: 305 DKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQRVGEI 353
>gi|78043555|ref|YP_360781.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995670|gb|ABB14569.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
hydrogenoformans Z-2901]
Length = 377
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 74/320 (23%), Positives = 134/320 (41%), Gaps = 5/320 (1%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
L+ L++ TG ++ E AS+TKLMT + +++ K L
Sbjct: 21 ALAAPLEINARAAILMEPYTGKILYEKEIHKKLPIASVTKLMTLLLAIEAVEKGKVNLED 80
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S+ A+ S G + + L + V SAND VA+AE++ E+ FV+ M
Sbjct: 81 IVKVSEEAASMGGSQLYMYAGEEFSFKDLLMAVAVASANDACVAVAETVAGNEQAFVEEM 140
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-PQYMHYFQIKGLEIKG 197
N ++ LG++ THF+N++G HY+T D+AIL + + L
Sbjct: 141 NKKAEELGMTNTHFVNSYGFDDPNHYSTCYDLAILLREAIKHPLFLELSQIKEFTLRGGE 200
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN + + G D KTG+T +G+ + ++A + D LIAV+LG + S
Sbjct: 201 TRRFNTNKLLWYYRGVDAGKTGWTEEAGYCLASTASRDDLRLIAVVLGCPVKKGHFTESI 260
Query: 258 SLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
L + G+ N + + + + V +++ N + + K
Sbjct: 261 KLYNYGYANFKAYPILAEKFSVKVKVVKGEKEQILVGPGAPVLLVEEKGKKINPRYEL-K 319
Query: 315 DKESHFIDFEKITLLKNKIT 334
E + ++ +
Sbjct: 320 LPEKITAPVKNGQVMGEVVI 339
>gi|283832568|ref|ZP_06352309.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
29220]
gi|291072237|gb|EFE10346.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
29220]
Length = 390
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 90/340 (26%), Positives = 146/340 (42%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F + + A +N+ F + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FAMSFSPAWATNVASFAPQPPAINAGAWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + K+ T +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSKRISPTDIVTVGRDAWAKDNPVFVGSSLMFLKQGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + + +FV MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQPQFVAMMNNYAQKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P + H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + LL G N + + + + +
Sbjct: 254 RRLIAVVMGAESAKGREDQARKLLQWGQQNFDTVQVLRSGKQVGTERIWYGDKEKISLGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + N + K DK+ +
Sbjct: 314 EQDFWMALPKAEVANIKAKYVLDKKELVAPIAAHQRVGEI 353
>gi|259909131|ref|YP_002649487.1| D-alanyl-D-alanine carboxypeptidase fraction A [Erwinia pyrifoliae
Ep1/96]
gi|224964753|emb|CAX56270.1| penicillin-binding protein 5 [Erwinia pyrifoliae Ep1/96]
Length = 404
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 150/353 (42%), Gaps = 21/353 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPF---------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ + +A+ N+ + + Y L+D N+G V+AE D
Sbjct: 10 LKRLTAGMLIALSLNVVAYADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ K+A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++++S ND VA+A+ + +++ FV MNN K LGL THF HG+ G Y+
Sbjct: 130 QLTRGIVLQSGNDACVAMADYVAGSQETFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P + K + N N T L DG+KTG T ++
Sbjct: 190 SARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESA 249
Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KD 279
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAGKEFASEP 309
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N + ++V T + + +K ++
Sbjct: 310 VWFGNSDRVQLGVEKDVYLTIPRGRMKDLKASYTLSNTELHAPLQKNQVVGTI 362
>gi|73539986|ref|YP_294506.1| penicillin-binding protein 6 [Ralstonia eutropha JMP134]
gi|72117399|gb|AAZ59662.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Ralstonia eutropha JMP134]
Length = 399
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 87/322 (27%), Positives = 146/322 (45%), Gaps = 15/322 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ L D +G +A D PASLTKLMTAY+ F LKEK+ L + +
Sbjct: 39 PQVAAKSWMLFDVTSGQALASQNADQRIEPASLTKLMTAYLAFEALKEKRLTLDQAVVPT 98
Query: 84 --KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ S + +++ + L LIV+S ND A+A+AE++ +E+ FV MN
Sbjct: 99 TLVLKVKSDESRMFIEPNKPVSVQDLLMGLIVQSGNDAALALAEAVGGSEEGFVAMMNRE 158
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
++ +G+ THF N G+ HYTTA D+A L+ R+ DFP+Y + K K P
Sbjct: 159 AQRMGMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIQDFPEYYGMYSQKEFTYNKIKQP 218
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNK 254
N N + DG+KTG T ++G+ +++SA + G + LI+V++G R +
Sbjct: 219 NRNRLLYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPNGSRRLISVVIGTTTEQVRTQ 278
Query: 255 VSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNT 308
S +L+ GF + + D Y+ + E V +
Sbjct: 279 ESLKILNYGFQFFDTLRLYDKGQVLATPDIYKGKAGTVKIGVQNETFVTVPKGTGGRLKP 338
Query: 309 QMKEAKDKESHFIDFEKITLLK 330
++ + + +++ +K
Sbjct: 339 VLERQELLIAPIAAGQQVGSVK 360
>gi|317132116|ref|YP_004091430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ethanoligenens harbinense
YUAN-3]
gi|315470095|gb|ADU26699.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ethanoligenens harbinense
YUAN-3]
Length = 419
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 83/317 (26%), Positives = 148/317 (46%), Gaps = 3/317 (0%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A T L + +TG ++ EN P PAS++K+MT +V ++ K T
Sbjct: 66 TPPAVTTTAKSAVLAEQSTGRILYENNPHEKMYPASISKIMTELLVLEAIENGKLHFTDK 125
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+++S +AS S+ + G MT+ + K ++V SAND AVA+AE + +E FV MN
Sbjct: 126 VSVSAHASSMGGSDIWLEPGEVMTVLDLFKAMVVNSANDAAVALAEKVAGSEPAFVNLMN 185
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK-TDFPQYMHYFQIKGLEIKGK 198
+K LG++ T+F NA G+ G+ T+A D+ ++S + + L
Sbjct: 186 RKAKELGMNDTNFTNATGLDADGNLTSAYDVMLMSRELLRHKEIFNYTTIWMDSLRGGKT 245
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
NTN + + GA+G+KTG T +G+ + +A++ LIAV++ R + +
Sbjct: 246 ALFNTNRLIRFYQGANGLKTGSTGKAGYCLSGTALRDGMQLIAVVMNCPTLQERFTAAGT 305
Query: 259 LLSMGFYNKT--DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
LL GF N + KK++ + ++V +++ + E + ++
Sbjct: 306 LLDYGFANWSCVTPKKLSKPLYVDVLHGAQDKVEAVADGNPSVVIEKGKEDGIQQKVSLA 365
Query: 317 ESHFIDFEKITLLKNKI 333
++ EK +L
Sbjct: 366 QNVMAPVEKGQVLGQIT 382
>gi|84394380|ref|ZP_00993099.1| D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01]
gi|84374982|gb|EAP91910.1| D-alanyl-D-alanine carboxypeptidase [Vibrio splendidus 12B01]
Length = 393
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 89/341 (26%), Positives = 151/341 (44%), Gaps = 12/341 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + ++ F + A + L+D ++G V+AE + +PASLTK+MT+
Sbjct: 16 VALSATIATSSFAAPIVVPDAPKIAAKGFVLMDYHSGKVLAEKEMNTQLSPASLTKMMTS 75
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV+ L+ L + IS+NA S + G+T+ ++ + +I++S ND
Sbjct: 76 YVIGQELERGNINLNDDVVISENAWAKNFPDSSKMFIEVGTTVKVEELNRGIIIQSGNDA 135
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VA+AE + +E FV MN + ++G+ THF N HG+ Y+T DMA+L +
Sbjct: 136 TVAMAEHIAGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIR 195
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P + K G N N + DG+KTG T +G+++V+SA +G
Sbjct: 196 DVPDEYRIYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSKAGYSLVSSATEGKMR 255
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE 294
L+AV++G + N R S LLS GF + + + + E
Sbjct: 256 LVAVVMGTKNANARKTESKKLLSYGFRFFETVAPHTAGETFVEEKIWMGSKDTVALGVDE 315
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T N + +KE K ++ +
Sbjct: 316 DTFVTLPRGQAKNLKASFVLEKE-LEAPISKGDVVGKLFYQ 355
>gi|167901088|ref|ZP_02488293.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei NCTC 13177]
Length = 371
Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats.
Identities = 84/331 (25%), Positives = 148/331 (44%), Gaps = 15/331 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 1 TYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKI 60
Query: 75 MLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 61 TMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 120
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 121 QFVNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKE 180
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILG 245
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 181 FTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMG 240
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTT 299
+ R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 241 ETKESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIGTPRVYKGKSNNVQVGVKKDQFITVP 300
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 301 RGLADKVKPEVALNAPLIAPLADGQVVGSVK 331
>gi|20807406|ref|NP_622577.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
tengcongensis MB4]
gi|20515927|gb|AAM24181.1| D-alanyl-D-alanine carboxypeptidase [Thermoanaerobacter
tengcongensis MB4]
Length = 416
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 84/335 (25%), Positives = 142/335 (42%), Gaps = 18/335 (5%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + P L+D TG V+ + PAS TK++TA +
Sbjct: 13 VFAFLSVPAHAETPQPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPASTTKILTAIIALE 72
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
K L +T S+N ++ ++ G +TL+ L L+++SAND A+AIAE +
Sbjct: 73 KGK-----LDDVVTCSENVTKIEGNSIFLSPGEQLTLEQLLYALMLESANDAAIAIAEHI 127
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP----- 182
+ + F + MN ++ +G +HF+N +G+ HY+T DMA ++ +
Sbjct: 128 GGSVENFAKMMNEKAREIGAYNSHFVNPNGLPDENHYSTPYDMAQIARYAMQNAEFRKIV 187
Query: 183 ---QYMHYFQIKGLEIKGKKYPNT--NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
Y K + + N + + GADG+KTG+T A+G +VASA +
Sbjct: 188 STLHYQIPPTNKFDKPRDLWISNRLLKPSRFHYEGADGVKTGYTVAAGQVLVASATRDGH 247
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--IIKDFYQQNLSNEVPNISEE 295
LI+VI+G N + LL GF N + K +I ++P I+++
Sbjct: 248 RLISVIMGDEGINI-WTDTIKLLDYGFQNFSLVKVTQKDEVITSIELGKGGFKLPLIAQK 306
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ N+ E KE +K +L
Sbjct: 307 DFYYEVPKGKENSIKTEVVLKEDIKAPIQKGEVLG 341
>gi|170769785|ref|ZP_02904238.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
TW07627]
gi|170121399|gb|EDS90330.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
TW07627]
Length = 390
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 89/340 (26%), Positives = 147/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSSQAAENIPFSPQPPAIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVDMMNNYAEKLHLQDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P + H + K L G N N + DG+KTG T +GFN++ASA+ G
Sbjct: 194 IHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + N + K D + +
Sbjct: 314 EQGFWMVLPKTEIPNIKAKYTLDGKELTAPIAAHQRVGEI 353
>gi|193063321|ref|ZP_03044411.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
gi|192930905|gb|EDV83509.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
Length = 403
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFSSEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 310 WFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 361
>gi|329113407|ref|ZP_08242188.1| D-alanyl-D-alanine carboxypeptidase DacC [Acetobacter pomorum
DM001]
gi|326697232|gb|EGE48892.1| D-alanyl-D-alanine carboxypeptidase DacC [Acetobacter pomorum
DM001]
Length = 406
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 84/323 (26%), Positives = 145/323 (44%), Gaps = 4/323 (1%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + +LD N+G + E D P+SLTK+MTAYV F LK +
Sbjct: 52 TPATTPVGPVDTQARWACILDYNSGATLLEKNADERMPPSSLTKMMTAYVTFGMLKSGRL 111
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L + +S+ A S G ++++ + ++ ++++S ND + IAE + +E++F
Sbjct: 112 KLDQMLPVSERAWRMQGSRMFVPLGQSVSVQDLIQGMVIQSGNDACIVIAEGISGSEEQF 171
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MN+T+ LGL+ +HFMNA G HY +ARD+A L+ R+ DFP+Y H+F K
Sbjct: 172 VALMNDTATKLGLTNSHFMNATGWPAENHYMSARDVAYLALRLIHDFPEYYHFFSEKEFL 231
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ N N V L ADG+KTG T A GF + AS+ + + ++ + G R +
Sbjct: 232 FNKIRQENRNSLVVKGL-ADGLKTGHTDAGGFGLCASSEREGRRVVLAVNGLPSSAARGR 290
Query: 255 VSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+ L+ F N + ++ + ++ VP ++ + N
Sbjct: 291 EAERLMGWAFANFETAQIVSKGDVLEQAPVWMGVTQTVPLVAAQDFKILLPHGWRNGTHL 350
Query: 312 EAKDKESHFIDFEKITLLKNKIT 334
+ ++
Sbjct: 351 ALDYNGPIIAPVQAGQVVGQLTV 373
>gi|258542238|ref|YP_003187671.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-01]
gi|256633316|dbj|BAH99291.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-01]
gi|256636375|dbj|BAI02344.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-03]
gi|256639428|dbj|BAI05390.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-07]
gi|256642484|dbj|BAI08439.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-22]
gi|256645539|dbj|BAI11487.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-26]
gi|256648592|dbj|BAI14533.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-32]
gi|256651645|dbj|BAI17579.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654636|dbj|BAI20563.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-12]
Length = 406
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 84/323 (26%), Positives = 145/323 (44%), Gaps = 4/323 (1%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + +LD N+G + E D P+SLTK+MTAYV F LK +
Sbjct: 52 TPATTPVGPVDTQARWACILDYNSGATLLEKNADERMPPSSLTKMMTAYVTFGMLKSGRL 111
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L + +S+ A S G ++++ + ++ ++++S ND + IAE + +E++F
Sbjct: 112 KLDQMLPVSERAWRMQGSRMFVPLGQSVSVQDLIQGMVIQSGNDACIVIAEGISGSEEQF 171
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MN+T+ LGL+ +HFMNA G HY +ARD+A L+ R+ DFP+Y H+F K
Sbjct: 172 VALMNDTATKLGLTNSHFMNATGWPAENHYMSARDVAYLALRLIHDFPEYYHFFSEKEFL 231
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ N N V L ADG+KTG T A GF + AS+ + + ++ + G R +
Sbjct: 232 FNKIRQENRNSLVVKGL-ADGLKTGHTDAGGFGLCASSEREGRRVVLAVNGLPSSAARGR 290
Query: 255 VSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+ L+ F N + ++ + ++ VP ++ + N
Sbjct: 291 EAERLMGWAFANFETAQIVSKGDVLEQAPVWMGVTQTVPLVAAQDFKILLPHGWRNGTHL 350
Query: 312 EAKDKESHFIDFEKITLLKNKIT 334
+ ++
Sbjct: 351 ALDYNGPIIAPVQAGQVVGQLTV 373
>gi|317121980|ref|YP_004101983.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
marianensis DSM 12885]
gi|315591960|gb|ADU51256.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
marianensis DSM 12885]
Length = 438
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 89/324 (27%), Positives = 151/324 (46%), Gaps = 14/324 (4%)
Query: 18 PFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P + + ++D +G V+ D P +PAS++KLMT + ++ +
Sbjct: 73 PGQASGPGFRTQSAALLVMDAASGRVLWAKNADEPRHPASISKLMTLLLTLEAIQAGQIR 132
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L +T+S A P S + + G +T+++ +K + V SAND VA+AE + +FV
Sbjct: 133 LQDQVTVSPRAQGTPGSTAFLEVGERITVEDLIKAVAVASANDACVALAEYISGDVGRFV 192
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQI---- 190
Q MN ++ LGL+ T F++ HG+ G+ +ARD+A+LS + P+ + Y I
Sbjct: 193 QRMNRRAQELGLTRTRFVDPHGLTDQPGNRMSARDIAVLSRYMIQYHPEILRYTSIWEDW 252
Query: 191 -KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ + NTN V + G DG+KTG T SG ++V +A +GD I V+LG+ D
Sbjct: 253 LRKGTDREFWLTNTNKLVAWYEGVDGLKTGLTDESGPSVVVTARKGDDRFIVVVLGSPDS 312
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEE---VCTTQKEI 303
NTR + ++ LL F + + EVP EE V E
Sbjct: 313 NTRWREASRLLDWAFASFDSIPIAQRGQVLRTVRVAEGRRLEVPVTVEEAFGVTVPHGEG 372
Query: 304 INYNTQMKEAKDKESHFIDFEKIT 327
++ A+ + + +++
Sbjct: 373 GRVRWTLEVAEPVPAPVVPGQRVG 396
>gi|227114414|ref|ZP_03828070.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
gi|227327371|ref|ZP_03831395.1| D-alanyl-D-alanine carboxypeptidase fraction A [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 403
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 89/344 (25%), Positives = 148/344 (43%), Gaps = 15/344 (4%)
Query: 4 FLVIIAMAML----SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
L I A + N+ + Y L+D N+G V+AE D +PASLTK+
Sbjct: 18 LLAISASSFAYAEDINLKTMIPGVPQIDAESYILIDYNSGKVLAEMNADTRRDPASLTKM 77
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIV 113
MT+YV+ +K K +T+ K+A K G + + + +I+
Sbjct: 78 MTSYVIGQAIKSGKISPNDIVTVGKDAWATGNPTFQGSSLMFLKPGDRVPVSQLNRGIIL 137
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+A+ + ++ FV MN K LGL T+F HG+ G +++ARDMA++
Sbjct: 138 QSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLKNTNFETVHGLDAPGQFSSARDMALI 197
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA 232
+ D P+ ++ K + PN N + L DG+KTG T ++GFN+VASA
Sbjct: 198 GQALIRDVPEEYATYKEKEFTFNNIRQPNRNGLLWDSSLNVDGIKTGHTSSAGFNLVASA 257
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNE 288
+G LI+ +LG + R S LL+ GF + + + +
Sbjct: 258 TEGQMRLISAVLGGRNAKGRESESKKLLTWGFRFFETVAPLKAGKEFASEPVWFGDSDRV 317
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++ T + + D K ++ +
Sbjct: 318 ALGVEKDAYLTIPRGRMKDLKASYVLDNTELHAPLAKNQVVGSI 361
>gi|170767905|ref|ZP_02902358.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
TW07627]
gi|170123393|gb|EDS92324.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia albertii
TW07627]
Length = 403
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 86/352 (24%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFRGSSLMFLKPGMQVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 190 SARDMALIGQALIRDVPNEYAIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGRETESKKLLTWGFRFFETVNPLKVGKEFASEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N + ++V T + + + +K ++
Sbjct: 310 WFGNSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 361
>gi|193062785|ref|ZP_03043878.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
gi|331683696|ref|ZP_08384292.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli H299]
gi|192931428|gb|EDV84029.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E22]
gi|331078648|gb|EGI49850.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli H299]
Length = 388
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 94/351 (26%), Positives = 153/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G LIAVI+GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQHRLIAVIMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|260892123|ref|YP_003238220.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ammonifex
degensii KC4]
gi|260864264|gb|ACX51370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ammonifex
degensii KC4]
Length = 392
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 81/314 (25%), Positives = 135/314 (42%), Gaps = 18/314 (5%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ + + + K L++ TG ++ P+ PAS TK++TA V
Sbjct: 7 VIALIFVFFLGLGQAWAAPPEVKAEAAVLMEAETGQILYAKNPEERMYPASTTKILTALV 66
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
V + L I S A S+ K+G +++ +AL L++ SAND+AVA+A
Sbjct: 67 VLQHAR-----LNDQIVASPEAVGTEGSSIWLKEGEKLSVKDALYALLLNSANDVAVALA 121
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
+ + + F Q MN T++ G +++HF N HG+ HYTTA D+A ++ + +
Sbjct: 122 QKVSGSIPAFAQLMNETARACGATSSHFTNPHGLPDPEHYTTALDLARITRVALGNRL-F 180
Query: 185 MHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
K P N N + + GA G+KTG+T A+G +VA+A + +
Sbjct: 181 REIVATKTYTFHRPTLPEPFVLVNHNKLLWRYEGAIGVKTGYTTAAGQCLVAAAQRNGRE 240
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
LIAVIL + + LL GF + E+P ++ +
Sbjct: 241 LIAVILKSEGTEV-WNDAVKLLDYGFNAFKPVELFKKGETL-----GQAEIPGGNQPLLL 294
Query: 299 TQKEIINYNTQMKE 312
E Y +E
Sbjct: 295 IAGESFIYYVPTEE 308
>gi|311278994|ref|YP_003941225.1| Beta-lactamase [Enterobacter cloacae SCF1]
gi|308748189|gb|ADO47941.1| Beta-lactamase [Enterobacter cloacae SCF1]
Length = 395
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 90/336 (26%), Positives = 150/336 (44%), Gaps = 14/336 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
I+ A ++ P + + L+D TG ++ NPASLTKLMT YVV
Sbjct: 23 ISCAFAADALPITVSPPAIQAGAWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDR 82
Query: 68 FLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAV 121
+ +K +T+ +A K G +T+ + + LIV S ND V
Sbjct: 83 AIDSRKITPDDMVTVGHDAWAKGNPVFDGSSLMFLKPGDRLTVRDLSRGLIVDSGNDACV 142
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+A+ + + +FVQ MN + LGL THF HG+ G +++A D+A+LS I
Sbjct: 143 ALADYVAGGQPQFVQLMNGYVQKLGLKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGE 202
Query: 182 PQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P + H + K L G N N + DG+KTG T +GFN++ASA+ G++ LI
Sbjct: 203 PDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGERRLI 262
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEV 296
AV++GA R + + LL G N + ++ + + + ++
Sbjct: 263 AVVMGAESAKGREEQARKLLHWGQQNFDTVQILHSGKQVGSERIWYGDKEQIRLGTDQDF 322
Query: 297 CTTQKEIINYNTQMKE---AKDKESHFIDFEKITLL 329
+ N + K AK+ ++ +++ +
Sbjct: 323 WLALPKAEVPNIKAKYVLDAKELDAPIAAHQRVGEI 358
>gi|170021011|ref|YP_001725965.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
ATCC 8739]
gi|193069040|ref|ZP_03049998.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
gi|256023756|ref|ZP_05437621.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia sp.
4_1_40B]
gi|300951129|ref|ZP_07164994.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
116-1]
gi|300959200|ref|ZP_07171279.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
175-1]
gi|301028891|ref|ZP_07192063.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
196-1]
gi|307137249|ref|ZP_07496605.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
H736]
gi|331641134|ref|ZP_08342269.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H736]
gi|1778549|gb|AAB40832.1| penicillin-binding protein 5 [Escherichia coli]
gi|169755939|gb|ACA78638.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli ATCC
8739]
gi|192957584|gb|EDV88029.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E110019]
gi|260450201|gb|ACX40623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli DH1]
gi|299878139|gb|EFI86350.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
196-1]
gi|300314185|gb|EFJ63969.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
175-1]
gi|300449584|gb|EFK13204.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
116-1]
gi|323938394|gb|EGB34648.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520]
gi|323943047|gb|EGB39206.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482]
gi|323972087|gb|EGB67301.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007]
gi|331037932|gb|EGI10152.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H736]
Length = 427
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 34 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 93
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 94 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 153
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 154 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 213
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 214 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 273
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 274 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 333
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 334 WFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 385
>gi|237732061|ref|ZP_04562542.1| DacD [Citrobacter sp. 30_2]
gi|226907600|gb|EEH93518.1| DacD [Citrobacter sp. 30_2]
Length = 421
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 146/349 (41%), Gaps = 18/349 (5%)
Query: 2 RQFLVIIAMAMLSN-------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ +S + F + L+D TG ++ NPA
Sbjct: 36 RRLFIAASLFAMSFSPAYATDVASFAPQPPAINAGAWVLMDYTTGQILTAGNEHQQRNPA 95
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + K+ T +T+ ++A K+G +++ +
Sbjct: 96 SLTKLMTGYVVDRAIDSKRISPTDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 155
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MNN + L L THF HG+ G +++A
Sbjct: 156 RGLIVDSGNDACVALADYIAGGQPQFVAMMNNYVQKLNLRDTHFETVHGLDAPGQHSSAY 215
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P + H + K L G N N + DG+KTG T +GFN
Sbjct: 216 DLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFN 275
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + LL G N + + + +
Sbjct: 276 LIASAVDGQRRLIAVVMGAESAKGREDQARKLLQWGQQNFDTVQVLRSGKQVGIERIWYG 335
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++ + N + K DK+ +
Sbjct: 336 DKEKISLGTEQDFWMALPKAEVANIKAKYVLDKKELVAPIAAHQRVGEI 384
>gi|15800346|ref|NP_286358.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O157:H7 EDL933]
gi|16128615|ref|NP_415165.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli str. K-12 substr. MG1655]
gi|26246612|ref|NP_752652.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
CFT073]
gi|74311168|ref|YP_309587.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sonnei
Ss046]
gi|82775901|ref|YP_402248.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella
dysenteriae Sd197]
gi|89107501|ref|AP_001281.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K-12
substr. W3110]
gi|91209679|ref|YP_539665.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
UTI89]
gi|110640861|ref|YP_668589.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
536]
gi|117622848|ref|YP_851761.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
APEC O1]
gi|157159257|ref|YP_001461799.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
E24377A]
gi|168770236|ref|ZP_02795243.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4486]
gi|168778083|ref|ZP_02803090.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4196]
gi|168779124|ref|ZP_02804131.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4076]
gi|168786481|ref|ZP_02811488.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC869]
gi|170080211|ref|YP_001729531.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli str. K-12 substr. DH10B]
gi|170080312|ref|YP_001729632.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli str. K-12 substr. DH10B]
gi|170683720|ref|YP_001742748.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
SMS-3-5]
gi|188495416|ref|ZP_03002686.1| penicillin-binding protein 5 [Escherichia coli 53638]
gi|191167358|ref|ZP_03029174.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
gi|191172298|ref|ZP_03033840.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
gi|194437465|ref|ZP_03069562.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
gi|208808249|ref|ZP_03250586.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4206]
gi|208815700|ref|ZP_03256879.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4045]
gi|208823277|ref|ZP_03263595.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4042]
gi|209398518|ref|YP_002269267.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4115]
gi|209917890|ref|YP_002291974.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
SE11]
gi|215485672|ref|YP_002328103.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O127:H6 str. E2348/69]
gi|217326125|ref|ZP_03442209.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. TW14588]
gi|218553174|ref|YP_002386087.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
IAI1]
gi|218557570|ref|YP_002390483.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
S88]
gi|218688455|ref|YP_002396667.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
ED1a]
gi|218694072|ref|YP_002401739.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
55989]
gi|218699004|ref|YP_002406633.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
IAI39]
gi|218703966|ref|YP_002411485.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
UMN026]
gi|227884389|ref|ZP_04002194.1| serine family D-Ala-D-Ala carboxypeptidase [Escherichia coli 83972]
gi|237707395|ref|ZP_04537876.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia sp.
3_2_53FAA]
gi|238899909|ref|YP_002925705.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli BW2952]
gi|253774382|ref|YP_003037213.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160714|ref|YP_003043822.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli B
str. REL606]
gi|254791798|ref|YP_003076635.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O157:H7 str. TW14359]
gi|256020584|ref|ZP_05434449.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9]
gi|260842858|ref|YP_003220636.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str.
12009]
gi|260853884|ref|YP_003227775.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str.
11368]
gi|260866780|ref|YP_003233182.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str.
11128]
gi|261224099|ref|ZP_05938380.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O157:H7 str. FRIK2000]
gi|261257793|ref|ZP_05950326.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O157:H7 str. FRIK966]
gi|291281583|ref|YP_003498401.1| D-alanyl-D-alanine carboxypeptidase dacA precursor [Escherichia
coli O55:H7 str. CB9615]
gi|293403894|ref|ZP_06647888.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
FVEC1412]
gi|293408757|ref|ZP_06652596.1| conserved hypothetical protein [Escherichia coli B354]
gi|293413928|ref|ZP_06656577.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
B185]
gi|293418743|ref|ZP_06661178.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
B088]
gi|297519791|ref|ZP_06938177.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
OP50]
gi|298379670|ref|ZP_06989275.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
FVEC1302]
gi|300817851|ref|ZP_07098065.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
107-1]
gi|300823054|ref|ZP_07103188.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
119-7]
gi|300901139|ref|ZP_07119246.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
198-1]
gi|300907806|ref|ZP_07125423.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
gi|300920556|ref|ZP_07136981.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
115-1]
gi|300927270|ref|ZP_07142998.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
182-1]
gi|300931564|ref|ZP_07146878.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
187-1]
gi|300937897|ref|ZP_07152688.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
gi|300990039|ref|ZP_07179081.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
gi|300996738|ref|ZP_07181525.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
200-1]
gi|301025238|ref|ZP_07188805.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
gi|301049826|ref|ZP_07196766.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
185-1]
gi|301302111|ref|ZP_07208244.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
124-1]
gi|301329153|ref|ZP_07222150.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
gi|306812936|ref|ZP_07447129.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
NC101]
gi|307312652|ref|ZP_07592284.1| Beta-lactamase [Escherichia coli W]
gi|309785937|ref|ZP_07680566.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
1617]
gi|309795501|ref|ZP_07689918.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
145-7]
gi|312965077|ref|ZP_07779314.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75]
gi|312970712|ref|ZP_07784893.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70]
gi|331645789|ref|ZP_08346892.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M605]
gi|331651643|ref|ZP_08352662.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M718]
gi|331656658|ref|ZP_08357620.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA206]
gi|331676290|ref|ZP_08377002.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H591]
gi|331682055|ref|ZP_08382679.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H299]
gi|332281770|ref|ZP_08394183.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9]
gi|83288470|sp|P0AEB4|DACA_ECO57 RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
Full=Penicillin-binding protein 5; Short=PBP-5; Flags:
Precursor
gi|83288471|sp|P0AEB3|DACA_ECOL6 RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
Full=Penicillin-binding protein 5; Short=PBP-5; Flags:
Precursor
gi|83288472|sp|P0AEB2|DACA_ECOLI RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
Full=Beta-lactamase; AltName: Full=Penicillin-binding
protein 5; Short=PBP-5; Flags: Precursor
gi|12513533|gb|AAG54966.1|AE005242_10 D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
protein 5 [Escherichia coli O157:H7 str. EDL933]
gi|26107011|gb|AAN79195.1|AE016757_99 Penicillin-binding protein 5 precursor [Escherichia coli CFT073]
gi|41212|emb|CAA29774.1| unnamed protein product [Escherichia coli K-12]
gi|1651259|dbj|BAA35275.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli str. K12
substr. W3110]
gi|1786851|gb|AAC73733.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli str. K-12 substr. MG1655]
gi|73854645|gb|AAZ87352.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sonnei
Ss046]
gi|81240049|gb|ABB60759.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella
dysenteriae Sd197]
gi|91071253|gb|ABE06134.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
protein 5 [Escherichia coli UTI89]
gi|110342453|gb|ABG68690.1| D-alanyl-D-alanine carboxypeptidas, penicillin-binding protein 5
[Escherichia coli 536]
gi|115511972|gb|ABJ00047.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
protein 5 [Escherichia coli APEC O1]
gi|157081287|gb|ABV20995.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli E24377A]
gi|169888046|gb|ACB01753.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli str. K-12 substr. DH10B]
gi|169888147|gb|ACB01854.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli str. K-12 substr. DH10B]
gi|170521438|gb|ACB19616.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli SMS-3-5]
gi|187766838|gb|EDU30682.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4196]
gi|188490615|gb|EDU65718.1| penicillin-binding protein 5 [Escherichia coli 53638]
gi|189002783|gb|EDU71769.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4076]
gi|189360912|gb|EDU79331.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4486]
gi|189373492|gb|EDU91908.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC869]
gi|190902607|gb|EDV62340.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli B7A]
gi|190907397|gb|EDV66994.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli F11]
gi|194423634|gb|EDX39624.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli 101-1]
gi|208728050|gb|EDZ77651.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4206]
gi|208732348|gb|EDZ81036.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4045]
gi|208737470|gb|EDZ85154.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4042]
gi|209159918|gb|ACI37351.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. EC4115]
gi|209777148|gb|ACI86886.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
gi|209777150|gb|ACI86887.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
gi|209777152|gb|ACI86888.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
gi|209777154|gb|ACI86889.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
gi|209777156|gb|ACI86890.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli]
gi|209911149|dbj|BAG76223.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE11]
gi|215263744|emb|CAS08080.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli O127:H6 str. E2348/69]
gi|217322346|gb|EEC30770.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli O157:H7
str. TW14588]
gi|218350804|emb|CAU96496.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli 55989]
gi|218359942|emb|CAQ97485.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli IAI1]
gi|218364339|emb|CAR02013.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli S88]
gi|218368990|emb|CAR16744.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli IAI39]
gi|218426019|emb|CAR06836.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli ED1a]
gi|218431063|emb|CAR11939.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli UMN026]
gi|222032392|emb|CAP75131.1| Penicillin-binding protein 5 [Escherichia coli LF82]
gi|226898605|gb|EEH84864.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia sp.
3_2_53FAA]
gi|227838475|gb|EEJ48941.1| serine family D-Ala-D-Ala carboxypeptidase [Escherichia coli 83972]
gi|238860729|gb|ACR62727.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli BW2952]
gi|242376408|emb|CAQ31107.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
protein 5 [Escherichia coli BL21(DE3)]
gi|253325426|gb|ACT30028.1| Beta-lactamase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253972615|gb|ACT38286.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli B str. REL606]
gi|253976809|gb|ACT42479.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli BL21(DE3)]
gi|254591198|gb|ACT70559.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli O157:H7 str. TW14359]
gi|257752533|dbj|BAI24035.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O26:H11 str.
11368]
gi|257758005|dbj|BAI29502.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str.
12009]
gi|257763136|dbj|BAI34631.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O111:H- str.
11128]
gi|281177781|dbj|BAI54111.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli SE15]
gi|284920432|emb|CBG33493.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
[Escherichia coli 042]
gi|290761456|gb|ADD55417.1| D-alanyl-D-alanine carboxypeptidase dacA precursor [Escherichia
coli O55:H7 str. CB9615]
gi|291325271|gb|EFE64686.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
B088]
gi|291428480|gb|EFF01505.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
FVEC1412]
gi|291433986|gb|EFF06959.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
B185]
gi|291471935|gb|EFF14418.1| conserved hypothetical protein [Escherichia coli B354]
gi|294492617|gb|ADE91373.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli IHE3034]
gi|298279368|gb|EFI20876.1| D-alanyl-D-alanine carboxypeptidase fraction C [Escherichia coli
FVEC1302]
gi|300298421|gb|EFJ54806.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
185-1]
gi|300304453|gb|EFJ58973.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
200-1]
gi|300355406|gb|EFJ71276.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
198-1]
gi|300396141|gb|EFJ79679.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
gi|300400495|gb|EFJ84033.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
gi|300407211|gb|EFJ90749.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
gi|300412458|gb|EFJ95768.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
115-1]
gi|300416758|gb|EFK00069.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
182-1]
gi|300457097|gb|EFK20590.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
gi|300460633|gb|EFK24126.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
187-1]
gi|300524403|gb|EFK45472.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
119-7]
gi|300529548|gb|EFK50610.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
107-1]
gi|300842663|gb|EFK70423.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
124-1]
gi|300844500|gb|EFK72260.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
gi|305853699|gb|EFM54138.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
NC101]
gi|306907354|gb|EFN37859.1| Beta-lactamase [Escherichia coli W]
gi|307552502|gb|ADN45277.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ABU 83972]
gi|307627930|gb|ADN72234.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
UM146]
gi|308120876|gb|EFO58138.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
145-7]
gi|308926048|gb|EFP71526.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
1617]
gi|309700870|emb|CBJ00167.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
[Escherichia coli ETEC H10407]
gi|310337361|gb|EFQ02499.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1827-70]
gi|312290168|gb|EFR18051.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 2362-75]
gi|312945179|gb|ADR26006.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O83:H1 str. NRG 857C]
gi|315059887|gb|ADT74214.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia coli W]
gi|315135298|dbj|BAJ42457.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
DH1]
gi|315255065|gb|EFU35033.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1]
gi|315287076|gb|EFU46490.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
110-3]
gi|315292098|gb|EFU51450.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
153-1]
gi|315299178|gb|EFU58432.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3]
gi|320178421|gb|EFW53389.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905]
gi|320193039|gb|EFW67679.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
EC1212]
gi|320194186|gb|EFW68818.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli WV_060327]
gi|320198242|gb|EFW72846.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B]
gi|320638081|gb|EFX07845.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O157:H7 str. G5101]
gi|320643487|gb|EFX12657.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O157:H- str. 493-89]
gi|320648822|gb|EFX17449.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O157:H- str. H 2687]
gi|320654408|gb|EFX22455.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320660089|gb|EFX27619.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O55:H7 str. USDA 5905]
gi|320664886|gb|EFX32021.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O157:H7 str. LSU-61]
gi|323153647|gb|EFZ39895.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli EPECa14]
gi|323158915|gb|EFZ44926.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli E128010]
gi|323179892|gb|EFZ65449.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1180]
gi|323185014|gb|EFZ70381.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli 1357]
gi|323191270|gb|EFZ76534.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli RN587/1]
gi|323379549|gb|ADX51817.1| Beta-lactamase [Escherichia coli KO11]
gi|323945107|gb|EGB41169.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120]
gi|323952790|gb|EGB48658.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252]
gi|323958390|gb|EGB54096.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263]
gi|323963201|gb|EGB58769.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489]
gi|323967579|gb|EGB62995.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863]
gi|323976385|gb|EGB71475.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509]
gi|324006310|gb|EGB75529.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2]
gi|324010472|gb|EGB79691.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1]
gi|324016087|gb|EGB85306.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
117-3]
gi|324116706|gb|EGC10621.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167]
gi|326341383|gb|EGD65175.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
1044]
gi|326345839|gb|EGD69578.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
1125]
gi|327254316|gb|EGE65938.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli STEC_7v]
gi|330910393|gb|EGH38903.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli AA86]
gi|331044541|gb|EGI16668.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M605]
gi|331049921|gb|EGI21979.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli M718]
gi|331054906|gb|EGI26915.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA206]
gi|331076348|gb|EGI47630.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H591]
gi|331080734|gb|EGI51908.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli H299]
gi|332096835|gb|EGJ01825.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
155-74]
gi|332104122|gb|EGJ07468.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella sp. D9]
gi|332341978|gb|AEE55312.1| D-alanyl-D-alanine carboxypeptidase DacC [Escherichia coli UMNK88]
Length = 403
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 310 WFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 361
>gi|260844620|ref|YP_003222398.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str.
12009]
gi|257759767|dbj|BAI31264.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O103:H2 str.
12009]
Length = 388
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 94/351 (26%), Positives = 153/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFTAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++ASA+ G LIAVI+GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASAVDGQHRLIAVIMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 351
>gi|76808683|ref|YP_332034.1| penicillin-binding protein 6 [Burkholderia pseudomallei 1710b]
gi|134279982|ref|ZP_01766694.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 305]
gi|167822505|ref|ZP_02453976.1| penicillin-binding protein 6 [Burkholderia pseudomallei 9]
gi|217420171|ref|ZP_03451677.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
576]
gi|226193704|ref|ZP_03789307.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
Pakistan 9]
gi|254258059|ref|ZP_04949113.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
1710a]
gi|76578136|gb|ABA47611.1| penicillin-binding protein 6 [Burkholderia pseudomallei 1710b]
gi|134249182|gb|EBA49264.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 305]
gi|217397475|gb|EEC37491.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
576]
gi|225934282|gb|EEH30266.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
Pakistan 9]
gi|254216748|gb|EET06132.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
1710a]
Length = 437
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 84/331 (25%), Positives = 148/331 (44%), Gaps = 15/331 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 67 TYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKI 126
Query: 75 MLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 127 TMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 186
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 187 QFVNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKE 246
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILG 245
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 247 FTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMG 306
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTT 299
+ R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 307 ETKESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVP 366
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 367 RGLADKVKPEVALNAPLIAPLADGQVVGSVK 397
>gi|294338753|emb|CAZ87085.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
[Thiomonas sp. 3As]
Length = 393
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 85/323 (26%), Positives = 145/323 (44%), Gaps = 10/323 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ ++D +G ++AE+ PASLTKLMTAY+ F LKE L
Sbjct: 34 ATVPPPKLDARAWLVVDLTSGQILAEHDAHAQEAPASLTKLMTAYLTFKALKEGTIKLNQ 93
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T SK A + S +++++ L +IV+S ND A+ +A+++ + FV M
Sbjct: 94 MVTESKEAWQTGGSRMFIDPRVPVSVNDLLLGMIVQSGNDAAMTLAQTVGGSVSAFVAMM 153
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQIKGLEIKG 197
N ++ GL THFM+ G+ GH+TTA D++I++ I DFP YF++K
Sbjct: 154 NRQAQQWGLKGTHFMDPTGLPDPGHHTTAYDLSIIATHIIRDFPADYARYFKVKEFTYNH 213
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILGALDRNTRN 253
PN + T DGMKTG+T +G+ ++ SA++ G + L+ V++G R
Sbjct: 214 ITQPNRVSLLFTDPSVDGMKTGYTSEAGYCMITSALRQFPNGPRRLLTVVMGTPTERARG 273
Query: 254 KVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
+ S LL+ + N D + ++ + S V + + + Q
Sbjct: 274 EESQVLLNWAYQNFDDIVLASPGKPVLTAPVWKGVDNKVELGSSVPVVISVPRGMGKDLQ 333
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
K + + + +
Sbjct: 334 TKVVR-PDPLVAPLQAGQRVGQL 355
>gi|15612584|ref|NP_240887.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus halodurans
C-125]
gi|10172633|dbj|BAB03740.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus halodurans
C-125]
Length = 444
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 81/363 (22%), Positives = 146/363 (40%), Gaps = 32/363 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ F++++AMAM+ ++F + A + L+D +G ++ D AS+TK
Sbjct: 7 KWFILVLAMAMVFSMFTPAMTANAAFELEAESAILVDAESGKILYGKNIDAVLPTASMTK 66
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVK 114
+M+ Y++ + E + + IS SN ++ T T+ + + +
Sbjct: 67 MMSEYLILEAINEGEISWDQEVPISDYVRELSLYVQLSNVPLRQDETYTVKELYESVAIY 126
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162
SAN +A+AE + +E FVQ MN + LGL F+N+ G+
Sbjct: 127 SANASTIALAELIAGSESAFVQRMNEKGEELGLEDFKFVNSSGLNNKDLLGNHPEGTDAN 186
Query: 163 --HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA------VGT 209
+ +AR A L++ + D+P+ + I + + N NW
Sbjct: 187 AENVMSARATAKLAYNLLKDYPEVLETASIPEKTFRAGEGEEIEMENWNWMLKGIRPQHD 246
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ G DG+KTG+T +G +A + LI+V++ R+ R K +A LL GF N T
Sbjct: 247 YEGIDGLKTGYTAEAGNCFTGTAERNGMRLISVVMRTETRDDRFKETAKLLDYGFNNFTH 306
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + Q L E +T + + +E ID +
Sbjct: 307 TEVLPAGFQPAEAQTLPVSSGKEREVSISTSEPLHAVVRNGEEELYDPVVTIDESSLDED 366
Query: 330 KNK 332
Sbjct: 367 GGL 369
>gi|310766969|gb|ADP11919.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia sp.
Ejp617]
Length = 411
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 150/353 (42%), Gaps = 21/353 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPF---------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ + +A+ N+ + + Y L+D N+G V+AE D
Sbjct: 17 LKRLTAGMLIALSLNVVAYADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARR 76
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ K+A K G + +
Sbjct: 77 DPASLTKMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 136
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++++S ND VA+A+ + +++ FV MNN K LGL THF HG+ G Y+
Sbjct: 137 QLTRGIVLQSGNDACVAMADYVAGSQETFVGLMNNYVKALGLQNTHFQTVHGLDADGQYS 196
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P + K + N N T L DG+KTG T ++
Sbjct: 197 SARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESA 256
Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KD 279
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 257 GYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAGKEFASEP 316
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N + ++V T + + +K ++
Sbjct: 317 VWFGNSDRVQLGVEKDVYLTIPRGRMKDLKASYTLSNTELHAPLQKNQVVGTI 369
>gi|283479159|emb|CAY75075.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Erwinia pyrifoliae
DSM 12163]
Length = 411
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 88/353 (24%), Positives = 150/353 (42%), Gaps = 21/353 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPF---------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ + +A+ N+ + + Y L+D N+G V+AE D
Sbjct: 17 LKRLTAGMLIALSLNVVAYADDVNIKTMIPGVPDIDAEAYVLIDYNSGKVLAEKNADARR 76
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ K+A K G + +
Sbjct: 77 DPASLTKMMTSYVIGQAIKAGKIHQDDMVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVS 136
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++++S ND VA+A+ + +++ FV MNN K LGL THF HG+ G Y+
Sbjct: 137 QLTRGIVLQSGNDACVAMADYVAGSQETFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYS 196
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P + K + N N T L DG+KTG T ++
Sbjct: 197 SARDMALIGRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESA 256
Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KD 279
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 257 GYNLVASATEGQQMRLISTVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAGKEFASEP 316
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N + ++V T + + +K ++
Sbjct: 317 VWFGNSDRVQLGVEKDVYLTIPRGRMKDLKASYTLSNTELHAPLQKNQVVGTI 369
>gi|225570661|ref|ZP_03779684.1| hypothetical protein CLOHYLEM_06761 [Clostridium hylemonae DSM
15053]
gi|225160488|gb|EEG73107.1| hypothetical protein CLOHYLEM_06761 [Clostridium hylemonae DSM
15053]
Length = 423
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 103/392 (26%), Positives = 165/392 (42%), Gaps = 56/392 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET----------------------------------- 25
M++F ++ L L+
Sbjct: 1 MKRFFALLICVFLCTQSVALAAPPDNTLLYEEDTGQEQEKNNEAGADDGTDAGSDSESGQ 60
Query: 26 -------NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
P L++ +TG VI E D PAS+TK+MT ++F LK+ K L
Sbjct: 61 DAASGLTVSAPSAVLMEASTGQVIYEKDADEQRPPASVTKIMTLLLIFDALKDGKIKLDD 120
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
++ S+ A+ S + G T T+D +K + V SAND VA+AE +C E++FV++M
Sbjct: 121 SVSTSEFAASMGGSQVFLEPGETQTVDTMIKCIAVASANDACVAMAEYICGNEEEFVKNM 180
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K LG++ THF+N +G+ GH TTARD+A++S + T +PQ Y I I
Sbjct: 181 NERAKGLGMTNTHFVNCNGLDTDGHLTTARDIALMSRELITTYPQIRDYSMIWMENITHT 240
Query: 199 K--------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
NTN V + A G+KTG T + + + A+A + LIAVI+ A D
Sbjct: 241 TNKGTTEFGLTNTNKLVRQYEYATGLKTGSTDKAKYCVSATAEKNGMELIAVIMAAPDHK 300
Query: 251 TRNKVSASLLSMGF---YNKTDRKKINYIIKDFYQQNLSNEVPNISEE---VCTTQKEII 304
R + +LL+ GF + K + + +E + TT ++
Sbjct: 301 ARFSDATTLLNYGFGKCNKYEEDKIASIKPVSLSRGVKKTVKAEQTEPFAYIDTTGADLN 360
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + K ++ KI +K + K
Sbjct: 361 SIEKKKVMKKKLKAPIKKGTKIGEMKYYLAGK 392
>gi|157369871|ref|YP_001477860.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans
568]
gi|157321635|gb|ABV40732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans
568]
Length = 401
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 91/346 (26%), Positives = 158/346 (45%), Gaps = 14/346 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+++ +++ +L+ + A Y L+D N+G ++AE D +PASLT
Sbjct: 10 LKKLTFSVSILLLAVPVVQAAEAPAAPQVDAKAYVLMDYNSGKILAEGNADTRLDPASLT 69
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
K+M++YV+ +K K +T+ K+A K G + + K +
Sbjct: 70 KIMSSYVIGQAIKAGKIKPEDMVTVGKDAWATGNPALRGSSLMFIKPGDQVPVMELNKGI 129
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+++S ND ++A+A+ + ++ FV MNN +K+LGL THF+ HG+ G Y+TARDMA
Sbjct: 130 VIQSGNDASIALADYVAGSQDSFVGLMNNYAKSLGLQNTHFLTVHGLDAEGQYSTARDMA 189
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVA 230
+L + D P + K + N N T L DG+KTG+T +G N+VA
Sbjct: 190 LLGQALIRDVPDEYALHKEKEFTFNKIRQVNRNRLLWSTNLSVDGIKTGYTGGAGHNLVA 249
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLS 286
SA G LI+V+LGA R S LL+ GF I + + + ++
Sbjct: 250 SATDGPMRLISVVLGAPSDRIRFSESEKLLTWGFRFYETATPIKTDKPFVTQKVWFGDVG 309
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++++ T + N + ++ + K ++
Sbjct: 310 EVPLGVAKDAAVTIPKGQMKNLKASYKLNQPTLEAPLAKNQVVGTI 355
>gi|218549792|ref|YP_002383583.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia
fergusonii ATCC 35469]
gi|218357333|emb|CAQ89970.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Escherichia fergusonii ATCC 35469]
gi|324114754|gb|EGC08722.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253]
gi|325498188|gb|EGC96047.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia
fergusonii ECD227]
Length = 403
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 87/352 (24%), Positives = 147/352 (41%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAML---------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ NI + A + L+D N+G V+AE D
Sbjct: 10 MQRLALTTALCTAAISGAHADDLNIKTMIPGAPQIDAEAWILIDYNSGKVLAEQNADTRR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 130 QLIRGINLQSGNDACVAMADYAAGSQDAFVGLMNSYVNALGLKNTHFETVHGLDAEGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 190 SARDMALIGQALIRDVPNEYAIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTNQA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 310 WFGDNDRASLGVDKDVYLTIPRGRLKDLKASYVLNTPELHAPLQKNQVVGTI 361
>gi|315618015|gb|EFU98607.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 3431]
Length = 390
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 88/340 (25%), Positives = 148/340 (43%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ ++ + PF + L+D TG ++ NPASLTKLMT Y
Sbjct: 14 FVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ ++A K+G +++ + + LIV S N
Sbjct: 74 VVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSGN 133
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+LS I
Sbjct: 134 DACVALADYIAGGQRQFVKMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 193
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P++ H + K L G N N + DG+KTG T +GFN++A A+ G
Sbjct: 194 IHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIALAVDGQ 253
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 254 RRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGT 313
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 314 EQEFWMVLPKAEIPHIKAKYTVDGKELTAPISAHQRVGEI 353
>gi|331666984|ref|ZP_08367858.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA271]
gi|331066208|gb|EGI38092.1| D-alanyl-D-alanine carboxypeptidase DacA [Escherichia coli TA271]
Length = 403
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 310 WFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 361
>gi|192293106|ref|YP_001993711.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris TIE-1]
gi|192286855|gb|ACF03236.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris TIE-1]
Length = 483
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 103/314 (32%), Positives = 168/314 (53%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+++ + + L++ +TG V+ + +PW+PAS+TKLMT YV
Sbjct: 14 FLTIVVAALLSLTVLPRVANAEALLLIEADTGKVLQADNATYPWHPASVTKLMTLYVTLQ 73
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+K+ + T +T+S AS PS F+ G+ +T+DNALK+++VKSAND+AV +AE +
Sbjct: 74 AVKQGRLTPDTLLTVSPIASAQSPSKMGFRAGTQVTVDNALKMMMVKSANDMAVVLAEGV 133
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ F MN+T+ LG++ TH++N +G+ T+ARD+AIL+ I D P+Y +Y
Sbjct: 134 GGSIDGFSAMMNDTAARLGMTQTHYVNPNGLPADEQVTSARDLAILARAIIRDLPEYEYY 193
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
I + + N N +G + GADG KTGF CASG+N+VASA + + LIAV+LGA
Sbjct: 194 VHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAVVLGAN 253
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R +A LL GF T + ++ P++ +E+C +++ +
Sbjct: 254 SGQDRAVKAAQLLERGFSTNTLAWLTPSLGTVDNLAPIAAAPPDLRDEMCGPKRKRPASD 313
Query: 308 TQMKEAKDKESHFI 321
A + +
Sbjct: 314 EDETVANALSGNPV 327
>gi|39937326|ref|NP_949602.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris CGA009]
gi|39651184|emb|CAE29707.1| possible D-alanyl-D-alanine carboxypeptidase (penicillin-binding
protein) [Rhodopseudomonas palustris CGA009]
Length = 484
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 103/314 (32%), Positives = 168/314 (53%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+++ + + L++ +TG V+ + +PW+PAS+TKLMT YV
Sbjct: 14 FLTIVVAALLSLTVLPRVANAEALLLIEADTGKVLQADNATYPWHPASVTKLMTLYVTLQ 73
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+K+ + T +T+S AS PS F+ G+ +T+DNALK+++VKSAND+AV +AE +
Sbjct: 74 AVKQGRLTPDTLLTVSPIASAQSPSKMGFRAGTQVTVDNALKMMMVKSANDMAVVLAEGV 133
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ F MN+T+ LG++ TH++N +G+ T+ARD+AIL+ I D P+Y +Y
Sbjct: 134 GGSIDGFSAMMNDTAARLGMTQTHYVNPNGLPADEQVTSARDLAILARAIIRDLPEYEYY 193
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
I + + N N +G + GADG KTGF CASG+N+VASA + + LIAV+LGA
Sbjct: 194 VHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAVVLGAN 253
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R +A LL GF T + ++ P++ +E+C +++ +
Sbjct: 254 SGQDRAVKAAQLLERGFSTNTLAWLTPSLGTVDNLAPIAAAPPDLRDEMCGPKRKRPASD 313
Query: 308 TQMKEAKDKESHFI 321
A + +
Sbjct: 314 EDETVANALSGNPV 327
>gi|126441761|ref|YP_001057491.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei 668]
gi|237810642|ref|YP_002895093.1| D-alanyl-D-alanine carboxypeptidase DacC [Burkholderia pseudomallei
MSHR346]
gi|254187919|ref|ZP_04894431.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
Pasteur 52237]
gi|126221254|gb|ABN84760.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
668]
gi|157935599|gb|EDO91269.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
Pasteur 52237]
gi|237504177|gb|ACQ96495.1| D-alanyl-D-alanine carboxypeptidase DacC [Burkholderia pseudomallei
MSHR346]
Length = 437
Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats.
Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 15/331 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 67 TYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKI 126
Query: 75 MLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 127 TMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 186
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 187 QFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKE 246
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILG 245
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 247 FTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMG 306
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTT 299
+ R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 307 ETKESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVP 366
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 367 RGLADKVKPEVALNAPLIAPLADGQVVGSVK 397
>gi|192291489|ref|YP_001992094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris TIE-1]
gi|192285238|gb|ACF01619.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris TIE-1]
Length = 413
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 82/317 (25%), Positives = 128/317 (40%), Gaps = 8/317 (2%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ P L+D +G V+ E D P+S+ KLMT VF LK LT
Sbjct: 47 SGFEAQAPSAILVDAESGSVLFEKNADELRAPSSMMKLMTVETVFHLLKTGDLQLTQEYR 106
Query: 82 ISKNAS-----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+S+NA S + S +++DN L I++S ND + +AE + +E FV+
Sbjct: 107 VSENAWRNGGAPAGGSTMFAEIHSIISVDNLLHGAIIQSGNDSCMVLAEGIAGSEAAFVE 166
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
M ++ +GL+ + F N+ G+ + + R++A L+ I +P+Y F K
Sbjct: 167 QMTKRARAIGLTQSTFANSTGLPNPDNKMSVRELAKLARHIILTYPEYYPLFGEKEFTWN 226
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ N N + GADG KTG+T G+ +V SA+Q LI V+ G D + R +
Sbjct: 227 KIRQTNRNPLLNAMPGADGFKTGYTKEGGYGMVGSAVQNGMRLIVVVNGLDDADDRASEA 286
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQ---QNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
LL GF N R Y VP E + +
Sbjct: 287 KKLLEWGFRNFESRSLFANDATIGYARVFGGEKRYVPLTPAEPVRVMVRKNGSDKLIARI 346
Query: 314 KDKESHFIDFEKITLLK 330
+ E +
Sbjct: 347 VYQGPVPAPVESGQRVG 363
>gi|39935841|ref|NP_948117.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris CGA009]
gi|39649695|emb|CAE28216.1| penicillin binding protein [Rhodopseudomonas palustris CGA009]
Length = 413
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 82/317 (25%), Positives = 128/317 (40%), Gaps = 8/317 (2%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ P L+D +G V+ E D P+S+ KLMT VF LK LT
Sbjct: 47 SGFEAQAPSAILVDAESGSVLFEKNADELRAPSSMMKLMTVETVFHLLKTGDLQLTQEYR 106
Query: 82 ISKNAS-----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+S+NA S + S +++DN L I++S ND + +AE + +E FV+
Sbjct: 107 VSENAWRNGGAPAGGSTMFAEIHSIISVDNLLHGAIIQSGNDSCMVLAEGIAGSEAAFVE 166
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
M ++ +GL+ + F N+ G+ + + R++A L+ I +P+Y F K
Sbjct: 167 QMTKRARAIGLTQSTFANSTGLPNPDNKMSVRELAKLARHIILTYPEYYPLFGEKEFTWN 226
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ N N + GADG KTG+T G+ +V SA+Q LI V+ G D + R +
Sbjct: 227 KIRQTNRNPLLNAMPGADGFKTGYTKEGGYGMVGSAVQNGMRLIVVVNGLDDADDRASEA 286
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQ---QNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
LL GF N R Y VP E + +
Sbjct: 287 KKLLEWGFRNFESRSLFANDATIGYARVFGGEKRYVPLTPAEPVRVMVRKNGSDKLIARI 346
Query: 314 KDKESHFIDFEKITLLK 330
+ E +
Sbjct: 347 VYQGPVPAPVESGQRVG 363
>gi|289578326|ref|YP_003476953.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
italicus Ab9]
gi|289528039|gb|ADD02391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
italicus Ab9]
Length = 382
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 141/349 (40%), Gaps = 23/349 (6%)
Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++F L I+ M S S + ++D TG V+ E AS T
Sbjct: 1 MKKFVFYLFILLYFMSSVKVYANSDYPSIFAKSAIVIDQETGRVLYEKNSHEKLPMASTT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT V L +T+SK A+ S+ G + +++ L L++ S N
Sbjct: 61 KIMTLLVALEK-----GNLNDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGN 115
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSW 175
D A AIAE + + + F + MN +K +G THF+ G+ HYTTA D+A+++
Sbjct: 116 DAATAIAEHIGGSVENFAKIMNEKAKEIGAYDTHFVTPSGLDIGIDDHYTTAYDLALITR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+P++ K I + N N + + GADG+KTGFT +G +V
Sbjct: 176 Y-AFRYPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLV 234
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLS 286
+SA + + IAV+L + + S +L F + + I K +
Sbjct: 235 SSATREGRRFIAVVLNSP---PMWEDSIKILDYAFSKYKPYRVLKREELIKKIEVKGGKE 291
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
N + +SE C E ES EK + K
Sbjct: 292 NSISVVSEIECIIPASEEEKQKVSLEFHLPESVEAPIEKGERIGYVTVK 340
>gi|320177929|gb|EFW52913.1| D-alanyl-D-alanine carboxypeptidase [Shigella boydii ATCC 9905]
Length = 388
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 92/351 (26%), Positives = 153/351 (43%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FY 281
FN++AS + G + LIAV++GA R + + LL G N T + ++ K +
Sbjct: 241 FNLIASGVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIW 300
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N +E + + + K D + +
Sbjct: 301 YGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTVDGKELTAPISAHQRVGEI 351
>gi|325289983|ref|YP_004266164.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus
glycolicus DSM 8271]
gi|324965384|gb|ADY56163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus
glycolicus DSM 8271]
Length = 389
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 81/331 (24%), Positives = 143/331 (43%), Gaps = 4/331 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ ++ + ++ P ++ L+D ++G V+ E PAS+TKLMT
Sbjct: 14 LVIAVSCFFMYDVEPLMAANIETSAGSAILIDASSGKVLYEKDAHKRLAPASVTKLMTLL 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ L+ K L +T S+ A S + G ++L+ L + V SAND VA+
Sbjct: 74 IAAEALESGKVNLKDTVTASERACSMGGSQIYLEVGEKLSLEEMLISIAVGSANDACVAV 133
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + + ++FV MN +K LGL T+F+N +G+ GHYT+A D+AI++
Sbjct: 134 AEHINGSLEEFVHQMNEKAKKLGLVDTNFINDNGLPAEGHYTSAYDLAIIAKESLKYPLI 193
Query: 184 -YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ + L K NTN + + G G+KTG+T + + + ++ + LI V
Sbjct: 194 SKLTSIKEYDLRGGKFKLYNTNKLLWWYEGTSGLKTGWTQEAKYCLASTVERNGLKLICV 253
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTT 299
++ + S L + GF N + +K K Q+ + +V I ++
Sbjct: 254 VMAVPEVRGHFAESMKLYNYGFANYSYKKFAEAGSKQGETTVQKGTAEKVDLIVDKAVGI 313
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
E E ++ K L
Sbjct: 314 SIEKGKDKDYRMEISYDQTIHAPVVKGQKLG 344
>gi|238913456|ref|ZP_04657293.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 390
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 151/349 (43%), Gaps = 21/349 (6%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + + LL G N + ++ K +
Sbjct: 245 LIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHNGKKVGSERIWYG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEKITLL 329
+ ++ + + + K K+ E+ +++ +
Sbjct: 305 DKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQRVGEI 353
>gi|15829924|ref|NP_308697.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O157:H7 str. Sakai]
gi|13360128|dbj|BAB34093.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O157:H7 str. Sakai]
Length = 403
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKDTDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 310 WFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 361
>gi|325577705|ref|ZP_08147980.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus
parainfluenzae ATCC 33392]
gi|325160450|gb|EGC72576.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus
parainfluenzae ATCC 33392]
Length = 395
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 94/349 (26%), Positives = 147/349 (42%), Gaps = 14/349 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-----SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+++ ++ + S Y L+D N+G V+A PD PAS
Sbjct: 8 LKKIVLCSGLMAASTFAASEDIQYGIAIPEVNAQTYVLMDYNSGAVLASLNPDQRQYPAS 67
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLI 112
LTK+MT+YVV + LK+ K +TIS++A S +++ + K +I
Sbjct: 68 LTKMMTSYVVGAALKQGKIHNEDMVTISESAWGRNFPDSSKMFLNLNQQVSVGDLNKGII 127
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND VA+AE + T FV MN + GL T+F HG+ Y+TARDMAI
Sbjct: 128 IVSGNDACVAVAEHISGTVANFVDTMNKYVQQFGLKNTNFTTPHGLDDPNQYSTARDMAI 187
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
+ I D P+ + K K PN N + DGMKTG T +G+N+VAS
Sbjct: 188 IGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVAS 247
Query: 232 AIQ-GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLS 286
A + LI+V++G R S LL GF N K + Y +
Sbjct: 248 ATSPNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETLKTYKANEEISKQSVYYGDKG 307
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ ++ T + + + + D + K ++ + +
Sbjct: 308 EVKVGVLQDGFITVPKGKQADLKARYELDNKYLQAPLAKGQVVGKIVYQ 356
>gi|254295961|ref|ZP_04963418.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
406e]
gi|157805850|gb|EDO83020.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia pseudomallei
406e]
Length = 437
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 15/331 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 67 TYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKI 126
Query: 75 MLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 127 TMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 186
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 187 QFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKE 246
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILG 245
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 247 FTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMG 306
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTT 299
+ R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 307 ETKESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVP 366
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 367 RGLADKVKPEVALNAPLIAPLADGQVVGSVK 397
>gi|91975804|ref|YP_568463.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisB5]
gi|91682260|gb|ABE38562.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisB5]
Length = 492
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 109/311 (35%), Positives = 171/311 (54%), Gaps = 5/311 (1%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ IA ++ P L+ AE L++ +TG V+ +PW PAS+TK+MTAYV
Sbjct: 16 IAIAATLMLMAAPRLASAEAL-----LLIEADTGKVLQAENATYPWYPASVTKIMTAYVT 70
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+KE + L + +T+S A+ PS F+ G+ +T+DNALK+++VKSAND+AV +AE
Sbjct: 71 LKAVKEGRLTLDSLLTVSPVAAAQSPSKMGFRPGTQITVDNALKMMMVKSANDMAVVLAE 130
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+ + F MN T++ LG++ TH++N +G+ G T+ARD+ IL+ + D P+Y
Sbjct: 131 GVGGSIDGFSATMNATAQRLGMTQTHYVNPNGLPADGQVTSARDLGILARAMIRDLPEYE 190
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
++ I + + N N +G + GADG KTGF CASG+N+VASA + + LIAV+LG
Sbjct: 191 YFSHIPAIRFGKRVTHNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAVVLG 250
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
A R +A LL GF T + + PN+ EE+C +++
Sbjct: 251 ANSGQDRAVKAAQLLERGFSANTLAWLTPSLGTVDNLAPIDATPPNLREEMCGPKRKRPA 310
Query: 306 YNTQMKEAKDK 316
+ + A
Sbjct: 311 SDEDEQVASVI 321
>gi|269965477|ref|ZP_06179596.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
gi|269829956|gb|EEZ84186.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 40B]
Length = 392
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 92/341 (26%), Positives = 147/341 (43%), Gaps = 12/341 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + + A Y L+D ++G V+AE + +PASLTK+MT+
Sbjct: 15 VALSATFAQSALASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTS 74
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV+ L +TISKNA S + G+T+ + + + +IV+S ND
Sbjct: 75 YVIGQELARGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLNRGIIVQSGNDA 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VA+AE + +E FV MN + LG++ +HF N HG+ Y+T DMA+L +
Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWANTLGMTNSHFANVHGLDNAELYSTPYDMALLGKALIR 194
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P + K G N N + DG+KTG T +G+++V+SA +G
Sbjct: 195 DVPNEYRVYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE 294
L+AV++G D N R S LLS GF + + N + +
Sbjct: 255 LVAVVMGTKDANARKSESKKLLSYGFRFFETVAPHKAGETFVEEKVWMGNKDTVALGLDQ 314
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T N + +KE K ++ +
Sbjct: 315 DTYVTLPRGEAKNLKASFVLEKE-LEAPINKGDVVGKLYYQ 354
>gi|323170759|gb|EFZ56409.1| D-alanyl-D-alanine carboxypeptidase dacC [Escherichia coli LT-68]
Length = 403
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 84/352 (23%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + + P ++ K G + N N + DG+KTG T +
Sbjct: 190 SARDMALIGQALIRNVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 310 WFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 361
>gi|323702413|ref|ZP_08114077.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
nigrificans DSM 574]
gi|323532552|gb|EGB22427.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
nigrificans DSM 574]
Length = 400
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 86/320 (26%), Positives = 141/320 (44%), Gaps = 17/320 (5%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L+D TG V+ E AS TK+MTA + L + T+SK+
Sbjct: 59 VSADAAILMDATTGQVLYEKNAHKRRPIASTTKIMTALLAIEC-----GNLKSVATVSKH 113
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A+ S+ + G +TL++ L ++ S ND VAIAE + E+ FV MN + L
Sbjct: 114 AAGTEGSSIYLRAGEKLTLEHLLYGALMHSGNDACVAIAEHIAGKEELFVNLMNYKAYLL 173
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---N 202
G THF N +G+ H +TA D+A+++ + + N
Sbjct: 174 GARNTHFANTNGLPHDQHLSTAYDLALITRHALKNPVFKQIVATRTHKIKGPQGLRYLAN 233
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
TN + ++ GA+G+KTG T A+G +V+SA + + LIAV+L A D R S LL
Sbjct: 234 TNQMLWSYQGANGVKTGTTNAAGKCLVSSATRDGRLLIAVVLHAGD---RYADSIRLLDY 290
Query: 263 GFYNKTDRKKINYIIKD---FYQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDK 316
GF N T+ + + + EVP +++ V K + ++
Sbjct: 291 GFQNFTNHTVVKKGEVVSTIKVNEGIKAEVPVVADRDLVVTIPVKRTDMIDRLVEIEPVL 350
Query: 317 ESHFIDFEKITLLKNKITKK 336
++ +K+ +K K+ +
Sbjct: 351 QAPIKSGQKVGGIKVKVNGQ 370
>gi|167917341|ref|ZP_02504432.1| penicillin-binding protein 6 [Burkholderia pseudomallei BCC215]
Length = 377
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 84/332 (25%), Positives = 150/332 (45%), Gaps = 15/332 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 6 ATYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 65
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 66 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 125
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 126 AQFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVK 185
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++
Sbjct: 186 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMM 245
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCT 298
G + R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 246 GETKESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITV 305
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 306 PRGLADKVKPEVALNAPLIAPLADGQVVGSVK 337
>gi|301643955|ref|ZP_07243981.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
146-1]
gi|301077690|gb|EFK92496.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
146-1]
Length = 427
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 34 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 93
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 94 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 153
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 154 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 213
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 214 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 273
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 274 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 333
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 334 WFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQIVGTI 385
>gi|262394994|ref|YP_003286848.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
gi|262338588|gb|ACY52383.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. Ex25]
Length = 392
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 92/341 (26%), Positives = 147/341 (43%), Gaps = 12/341 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + + A Y L+D ++G V+AE + +PASLTK+MT+
Sbjct: 15 VALSATFAQSALASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTS 74
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV+ L +TISKNA S + G+T+ + + + +IV+S ND
Sbjct: 75 YVIGQELARGNISEDDDVTISKNAWAKNFPESSKMFIEVGTTVKVRDLNRGIIVQSGNDA 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VA+AE + +E FV MN + LG++ +HF N HG+ Y+T DMA+L +
Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWANTLGMTNSHFANVHGLDNAELYSTPYDMALLGKALIR 194
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P + K G N N + DG+KTG T +G+++V+SA +G
Sbjct: 195 DVPNEYRVYSEKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGQMR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE 294
L+AV++G D N R S LLS GF + + N + +
Sbjct: 255 LVAVVMGTKDANARKSESKKLLSYGFRFFETVAPHKAGETFVEEKVWMGNKDTVALGLDQ 314
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T N + +KE K ++ +
Sbjct: 315 DTYVTLPRGEAKNLKASFVLEKE-LEAPINKGDVVGKLYYQ 354
>gi|153832244|ref|ZP_01984911.1| penicillin-binding protein 6 [Vibrio harveyi HY01]
gi|148871555|gb|EDL70410.1| penicillin-binding protein 6 [Vibrio harveyi HY01]
Length = 388
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 9/338 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+++ + + Y L+D +G +IAE PASLTKLMTAYVV
Sbjct: 13 LLLQTFSAPALAVVTPNPPQLQAKGYVLMDFQSGAIIAEQNARAGLAPASLTKLMTAYVV 72
Query: 66 FSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ +K + +T+S+NA S + +T+ N ++ +I++S ND VA
Sbjct: 73 GTEIKAGRLNWDDKVTVSENAWSAKFPDSSKMFIQPKDEITVANLMRGVIIQSGNDACVA 132
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +E FV MN + L L+ T+F+N+HG+ G T+ DMA L I D P
Sbjct: 133 LAEHVAGSEGAFVALMNGWADKLSLNDTYFVNSHGLDSEGIQTSPNDMATLMQAIINDVP 192
Query: 183 QYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ K + N N + DG KTG+T +G+++V+SA QG LI+
Sbjct: 193 DVYALYSEKVFKWNKITQYNRNKLLWDKSMDVDGGKTGYTSNAGYSLVSSAKQGKMRLIS 252
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVC 297
V++G + +R S +LLS GF ++ ++ ++S +++
Sbjct: 253 VVMGTPSKQSRITQSKNLLSYGFRFYDTKQVAKQGEVQTSAKVWKGDVSEIDLGFAQDAY 312
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T + + E K ++ + K
Sbjct: 313 LTLPRSLTAGLDKSVVVN-EPLIAPIAKGDVVGKVVWK 349
>gi|320086495|emb|CBY96266.1| DD-carboxypeptidase, penicillin-binding protein 6B [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 390
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 151/349 (43%), Gaps = 21/349 (6%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDHAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + + LL G N + ++ K +
Sbjct: 245 LIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIWYG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEKITLL 329
+ ++ + + + K K+ E+ +++ +
Sbjct: 305 DKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQRVGEI 353
>gi|167717860|ref|ZP_02401096.1| penicillin-binding protein 6 [Burkholderia pseudomallei DM98]
gi|167892592|ref|ZP_02479994.1| penicillin-binding protein 6 [Burkholderia pseudomallei 7894]
Length = 378
Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats.
Identities = 84/332 (25%), Positives = 150/332 (45%), Gaps = 15/332 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 7 ATYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 66
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 67 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 126
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 127 AQFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVK 186
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++
Sbjct: 187 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMM 246
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCT 298
G + R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 247 GETKESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITV 306
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 307 PRGLADKVKPEVALNAPLIAPLADGQVVGSVK 338
>gi|260428585|ref|ZP_05782564.1| D-alanyl-D-alanine carboxypeptidase DacC [Citreicella sp. SE45]
gi|260423077|gb|EEX16328.1| D-alanyl-D-alanine carboxypeptidase DacC [Citreicella sp. SE45]
Length = 392
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 82/337 (24%), Positives = 141/337 (41%), Gaps = 8/337 (2%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++A A + + A +LD TG V+ D PAS++KLMT Y+ F
Sbjct: 10 LLAAASTLAVLATQAGAFDTSARAAFVLDYTTGTVLMAKNADEAMPPASMSKLMTLYMAF 69
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ + + L + +S++A Y S + +++ L+ +IV S ND IAE+
Sbjct: 70 EAIHDGRLTLDERLPVSEHAMSYGGSTMFLNTQDRVRVEDLLRGIIVLSGNDACAVIAEA 129
Query: 127 LCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
L E F + M ++ LG++ + F NA G H + RD+ +L+ RI DFP++
Sbjct: 130 LSPNGTEPGFAELMTRRAQQLGMTNSTFANASGWPAANHRMSMRDLTLLATRIIEDFPEF 189
Query: 185 MHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
F K N N + +GADG+KTG T +G+ +V SA QG++ ++
Sbjct: 190 YPIFAEKQFAFDGRAPSNVNNRNPLLRLNIGADGLKTGHTAEAGYGLVGSAKQGERRVVF 249
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEEVCT 298
+ G R + S S+++ F +R + + V ++E+ T
Sbjct: 250 AMTGLDSERARAEESESIVNWAFRQFAERTLVKKGTAVAQADVWMGSAESVGLVAEDDIT 309
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T E + L I +
Sbjct: 310 LLVPVTPGTTLEAEVVYTGPLKAPIAQGQQLAELIIR 346
>gi|91786161|ref|YP_547113.1| penicillin-binding protein 6 [Polaromonas sp. JS666]
gi|91695386|gb|ABE42215.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Polaromonas sp. JS666]
Length = 400
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 96/341 (28%), Positives = 154/341 (45%), Gaps = 20/341 (5%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
A Y LLD ++A D P PASLTKLMT Y+VF LK KK
Sbjct: 26 VAHAQAPQAPEIAARSYLLLDVTANQILAAKDIDSPVEPASLTKLMTEYLVFDALKSKKI 85
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L +S+ A + P S + +++ +K ++V+S ND +A+AE + T + F
Sbjct: 86 DLKQTFGVSERAWKMPGSRMFIDPKMQVPVEDLIKGMVVQSGNDATMALAEGVGGTAEHF 145
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V+ MN +K LG+ +T + N G+ + GH TTARD++IL+ R+ DFP Y+ Y IK
Sbjct: 146 VRLMNEQAKALGMKSTAYKNPEGLTEPGHTTTARDLSILATRLMRDFPDYIGYSAIKKYR 205
Query: 195 IKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----------DQSLI 240
G N N + DG+KTG T A+G+ ++A+A + + L+
Sbjct: 206 YPGTPAANDTNRNTLLFRDPTVDGLKTGHTEAAGYCMIATARRDFPNLGVGGAPGGRRLL 265
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEE-- 295
A++LG + R S LL+ G+ K + + + ++ V E
Sbjct: 266 AIVLGTSSDSARANESQKLLNWGYTAFEAVKLFDAGQPVVAPSVWKGAASTVKLGRPEAI 325
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
V TQ+ + F+ +++ LK + +
Sbjct: 326 VVAVAAGSAPKVKTQVARPDPLVAPFVKGQQLGTLKVMLGE 366
>gi|167736880|ref|ZP_02409654.1| penicillin-binding protein 6 [Burkholderia pseudomallei 14]
Length = 376
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 84/332 (25%), Positives = 149/332 (44%), Gaps = 15/332 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 5 ATYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 64
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 65 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 124
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 125 AQFVNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVK 184
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++
Sbjct: 185 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMM 244
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCT 298
G + R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 245 GETKESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITV 304
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 305 PRGLADKVKPEVALNAPLIAPLADGQVVGSVK 336
>gi|166030455|ref|ZP_02233284.1| hypothetical protein DORFOR_00116 [Dorea formicigenerans ATCC
27755]
gi|166029813|gb|EDR48570.1| hypothetical protein DORFOR_00116 [Dorea formicigenerans ATCC
27755]
Length = 426
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 94/321 (29%), Positives = 144/321 (44%), Gaps = 11/321 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P L++ +TG VI E D PAS+TK+MT ++F L+E K L +T S+
Sbjct: 70 DISAPSALLMEASTGQVIYEKDADSKRPPASVTKVMTLLLIFDALQEGKIHLEDEVTTSE 129
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ S + G T++ +K + V SAND V +AE +C E++FV MN +K
Sbjct: 130 YAASMGGSQVFLEPGEVQTVETLIKCISVASANDACVCMAEYICGNEQEFVNQMNERAKG 189
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199
LG+ THF+N +G+ GH TTARD+A++S + +PQ Y I +I
Sbjct: 190 LGMENTHFVNCNGLDAEGHVTTARDIALMSRELIHTYPQIFDYCNIWMEDITHTTKKGST 249
Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
NTN + + A G+KTG T + F I A+A + + +IAVI+ A D R + +
Sbjct: 250 QFGLTNTNKMIRQYEYATGLKTGSTSQAKFCISATARKDNTDMIAVIMAADDSKARMRDA 309
Query: 257 ASLLSMGF---YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
+LL+ GF + E + +T K
Sbjct: 310 ITLLNYGFGKCQKYQEDTVKKIQDVPVKHGVEKKVGAAQMELFSYVDVTGADLSTIKKIV 369
Query: 314 KDKESHFIDFEKITLLKNKIT 334
K KE+ + + I
Sbjct: 370 KLKENATAPVRQGDKIGEVIY 390
>gi|17942531|pdb|1HD8|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of
Penicillin-Binding Protein 5 At 2.3 A Resolution
gi|28374028|pdb|1NJ4|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of
Penicillin-Binding Protein 5 At 1.9 A Resolution
gi|61679891|pdb|1SDN|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of
Penicillin-Binding Protein 5 Modified By Mercury
Length = 363
Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats.
Identities = 85/330 (25%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K
Sbjct: 3 LNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGK 62
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
T +TI +A K G + + ++ + ++S ND VA+A+
Sbjct: 63 FKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRDINLQSGNDACVAMADFA 122
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN+ LGL THF HG+ G Y++ARDMA++ + D P
Sbjct: 123 AGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSI 182
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K G + N N + DG+KTG T +G+N+VASA +G LI+ ++G
Sbjct: 183 YKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGG 242
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 243 RTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPR 302
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +K ++
Sbjct: 303 GRMKDLKASYVLNSSELHAPLQKNQVVGTI 332
>gi|188534483|ref|YP_001908280.1| D-alanyl-D-alanine carboxypeptidase fraction A [Erwinia
tasmaniensis Et1/99]
gi|188029525|emb|CAO97402.1| Penicillin-binding protein 5 [Erwinia tasmaniensis Et1/99]
Length = 404
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 88/345 (25%), Positives = 145/345 (42%), Gaps = 19/345 (5%)
Query: 7 IIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+IA+++ + + Y L+D N+G V+AE D +PASLTK+
Sbjct: 18 LIALSLNVVAYADDVNIKTMIPGVPEIDAEAYVLIDYNSGKVLAEKNADARRDPASLTKM 77
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIV 113
MT+YV+ +K K +T+ K+A K G + + + +++
Sbjct: 78 MTSYVIGQAIKAGKIHQDDIVTVGKDAWATGNPVFKGSSLMFLKPGDRVPVSQLTRGIVL 137
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND VA+A+ + ++ FV MNN K LGL THF HG+ G Y++ARDMA++
Sbjct: 138 QSGNDACVAMADYVAGSQDTFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSARDMALI 197
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA 232
+ D P + K + N N T L DG+KTG T ++G+N+VASA
Sbjct: 198 GRALIRDVPDEYAVYHEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTESAGYNLVASA 257
Query: 233 IQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSN 287
+G LI+ ++G R S LL+ GF + + + N
Sbjct: 258 TEGQQMRLISAVMGGHTYKGRETESKKLLTWGFRFFETVAPLKAGKEFASEPVWFGNSDR 317
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +V T + + +K ++
Sbjct: 318 VQLGVENDVYLTIPRGRMKDLKASYTLSNTELHAPLQKNQVVGTI 362
>gi|317491121|ref|ZP_07949557.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920668|gb|EFV41991.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 403
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 89/352 (25%), Positives = 153/352 (43%), Gaps = 20/352 (5%)
Query: 1 MRQFLV--IIAMAML-------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ + ++A+ M+ N+ + Y L+D N+G V+AE+ D
Sbjct: 10 IKRIALSSLLAIGMVNVVHADDVNLKTMIPGVPQIDAEAYILIDYNSGKVLAESNADARR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
NPASLTK+MT+YV+ +K K +T+ ++A K G + +
Sbjct: 70 NPASLTKMMTSYVIGQAMKAGKFTENDVVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ + ++ FV MNN K LGL THF HG+ G Y+
Sbjct: 130 LLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNNYVKALGLQNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P ++ K + N N T + DG+KTG T ++
Sbjct: 190 SARDMALIGQALIRDVPNEYAIYKEKEFTFNNIRQMNRNGLLWDTSMNVDGIKTGHTESA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDF 280
GFN+VASA +G LI+ +LG R S LL+ GF + +
Sbjct: 250 GFNLVASATEGQMRLISAVLGGHTSKGRESESKKLLTWGFRFFETVSPLKAGREFASEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + K ++
Sbjct: 310 WFGDTDRAQLGVDKDVYLTIPRGRMKDLKASYTLNSTELDAPLAKNQVVGTI 361
>gi|167909308|ref|ZP_02496399.1| penicillin-binding protein 6 [Burkholderia pseudomallei 112]
Length = 379
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 84/332 (25%), Positives = 150/332 (45%), Gaps = 15/332 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 8 ATYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 67
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 68 ITMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 127
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 128 AQFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVK 187
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++
Sbjct: 188 EFTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMM 247
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCT 298
G + R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 248 GETKESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITV 307
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 308 PRGLADKVKPEVALNAPLIAPLADGQVVGSVK 339
>gi|53724944|ref|YP_101907.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei ATCC 23344]
gi|52428367|gb|AAU48960.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei ATCC 23344]
Length = 403
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 84/331 (25%), Positives = 149/331 (45%), Gaps = 15/331 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 33 TYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKI 92
Query: 75 MLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 93 TMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 152
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN ++ LG+ +THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 153 QFVNMMNAEAQRLGMKSTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKE 212
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILG 245
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 213 FTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMG 272
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTT 299
+ R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 273 ETKESDRVQDSMKMLNYGYTAFDSVRLYKAGQPIGTPRVYKGKSNNVQVGVKKDQFITVP 332
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 333 RGLADKVKPEVALNAPLIAPLADGQVVGSVK 363
>gi|22126741|ref|NP_670164.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6
[Yersinia pestis KIM 10]
gi|45441099|ref|NP_992638.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Microtus str. 91001]
gi|149366701|ref|ZP_01888735.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CA88-4125]
gi|218928470|ref|YP_002346345.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CO92]
gi|21959762|gb|AAM86415.1|AE013888_11 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6
[Yersinia pestis KIM 10]
gi|45435958|gb|AAS61515.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Microtus str. 91001]
gi|115347081|emb|CAL19973.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CO92]
gi|149291075|gb|EDM41150.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis CA88-4125]
Length = 432
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 149/323 (46%), Gaps = 11/323 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +
Sbjct: 64 PAAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLV 123
Query: 81 TISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
T+ K+A K G + + + K ++++S ND ++A+A+ + ++ F
Sbjct: 124 TVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSF 183
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K
Sbjct: 184 VGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFT 243
Query: 195 IKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ N N + DGMKTG+T +G+N+VASA G LI+V+LGA R
Sbjct: 244 FNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRF 303
Query: 254 KVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
S LL+ GF I + + + S ++E+ T + N +
Sbjct: 304 SESEKLLTWGFRFYETVVPIKSTKPFVTEKVWLGDNSQVELGVAEDAAITIPKGQMKNLK 363
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
++ K ++
Sbjct: 364 ASYTLNQTELRAPLAKHQVVGTI 386
>gi|42543137|pdb|1NZO|A Chain A, The Crystal Structure Of Wild Type Penicillin-Binding
Protein 5 From E. Coli
gi|46014978|pdb|1NZU|A Chain A, Wild-Type Penicillin-Binding Protein 5 From E. Coli
Modified By Beta-Mercaptoethanol
gi|71042191|pdb|1Z6F|A Chain A, Crystal Structure Of Penicillin-Binding Protein 5 From E.
Coli In Complex With A Boronic Acid Inhibitor
gi|197305030|pdb|3BEB|A Chain A, Crystal Structure Of E. Coli Penicillin-Binding Protein 5
In Complex With A Peptide-Mimetic Penicillin
gi|197305031|pdb|3BEC|A Chain A, Crystal Structure Of E. Coli Penicillin-Binding Protein 5
In Complex With A Peptide-Mimetic Cephalosporin
gi|326327867|pdb|3MZD|A Chain A, Structure Of Penicillin-Binding Protein 5 From E. Coli:
Cloxacillin Acyl-Enzyme Complex
gi|326327868|pdb|3MZE|A Chain A, Structure Of Penicillin-Binding Protein 5 From E.Coli:
Cefoxitin Acyl- Enzyme Complex
gi|326327869|pdb|3MZF|A Chain A, Structure Of Penicillin-Binding Protein 5 From E. Coli:
Imipenem Acyl- Enzyme Complex
Length = 363
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 85/330 (25%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K
Sbjct: 3 LNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGK 62
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
T +TI +A K G + + ++ + ++S ND VA+A+
Sbjct: 63 FKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFA 122
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN+ LGL THF HG+ G Y++ARDMA++ + D P
Sbjct: 123 AGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSI 182
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K G + N N + DG+KTG T +G+N+VASA +G LI+ ++G
Sbjct: 183 YKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGG 242
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 243 RTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPR 302
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +K ++
Sbjct: 303 GRMKDLKASYVLNSSELHAPLQKNQVVGTI 332
>gi|316935787|ref|YP_004110769.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris DX-1]
gi|315603501|gb|ADU46036.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris DX-1]
Length = 483
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 100/319 (31%), Positives = 164/319 (51%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ + + + + L++ +TG V+ + +PW+PASLTKLMT
Sbjct: 9 RLSSSFLAIVAAALLSLTVLPRAASAEALLLIEADTGKVLQADNATYPWHPASLTKLMTM 68
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
YV +K+ + + +T+S A+ PS F G+ +T+DNALK+++VKSAND+AV
Sbjct: 69 YVTLQAVKQGRLTQDSLLTVSPIAAAQSPSKMGFGPGTQITVDNALKMMMVKSANDMAVV 128
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + + F MN+T+ LG++ T ++N +G+ T+ARD AIL+ + D P
Sbjct: 129 LAEGVGGSVDGFSAMMNDTAARLGMTQTRYVNPNGLPADEQVTSARDQAILARAVIRDLP 188
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+Y +Y I + + N N +G + GADG KTGF CASG+N+VASA + + LIAV
Sbjct: 189 EYEYYVHIPAIRFGKRVTRNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAV 248
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
+LGA R +A LL GF T + ++ P++ +E+C +++
Sbjct: 249 VLGANSGQDRAVKAAQLLERGFSTNTLAWLTPSLGTVDNLAPIAATPPDLRDEMCGPKRK 308
Query: 303 IINYNTQMKEAKDKESHFI 321
+ A +
Sbjct: 309 RPASDEDETVANALSGDAV 327
>gi|260438046|ref|ZP_05791862.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
DSM 2876]
gi|292809525|gb|EFF68730.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
DSM 2876]
Length = 385
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 88/349 (25%), Positives = 162/349 (46%), Gaps = 14/349 (4%)
Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++ F++ + + S + + L++ +TG +I E+ PD PAS+T
Sbjct: 1 MKKVFSFIISFILILSSAHISVTADELSLTSKSAILMEASTGKIIYEHNPDEILRPASIT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT ++F + + + + +T+S++A+ S + G T T++ +K + + SAN
Sbjct: 61 KIMTLILIFDAIHDGRIKMDDTVTVSEHAASMGGSQVFLEAGETQTVETLIKCIAIASAN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+AE + +E+ FV HMN +K L ++ T+F+N G+ H TTARD+A++S +
Sbjct: 121 DACVAMAEYIDTSEENFVAHMNERAKGLSMTNTNFVNCCGLDADNHVTTARDVALMSKEL 180
Query: 178 KTDFPQYMHYFQIKGLEIKG--------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+P+ + I I NTN + + A G+KTG T +GF +
Sbjct: 181 INKYPEIHNISTIWMDTITHVTRRGESDFTLTNTNKLIKQYEWATGLKTGSTSLAGFCLS 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN--YIIKDFYQQNLSN 287
A+A + D LI+V++ + D +R S LL+ G+ K N I +
Sbjct: 241 ATAKRNDIELISVVMASKDGKSRVADSIKLLNYGYSLCQMYKDSNMPNIPSPGISGGMIK 300
Query: 288 EVP-NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E+ S+ E + K+ + + ++ ++ K
Sbjct: 301 ELDCEYSDNFSYLFTEKYDEALITKDFEFIDGLKAPVKEGDVVGQLCYK 349
>gi|281600032|gb|ADA73016.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella flexneri
2002017]
Length = 427
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 34 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 93
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 94 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 153
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 154 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 213
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 214 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 273
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 274 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 333
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 334 WFSDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 385
>gi|307130041|ref|YP_003882057.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
gi|306527570|gb|ADM97500.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
Length = 403
Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats.
Identities = 89/351 (25%), Positives = 150/351 (42%), Gaps = 20/351 (5%)
Query: 2 RQFLVIIAMAMLSNIFPF---------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
++ + +A+ ++ F + + Y L+D N+G V+AE D N
Sbjct: 11 KRIALGTLLAISASTFAYADDINLKTMIPAVPDIDAEAYILIDYNSGKVLAEKNADARRN 70
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS------EYPPSNSTFKKGSTMTLDN 106
PASLTK+MT+YV+ +K K +TI K+A S K G + +
Sbjct: 71 PASLTKMMTSYVIGQAIKSGKISPNDVVTIGKDAWATGNPDFQGSSLMFLKPGDRVPVYL 130
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
K +I++S ND VA+A+ + ++ FV MN K LGL T+F HG+ G Y++
Sbjct: 131 LNKGIILQSGNDACVAMADYVAGSQDSFVNLMNGYVKALGLQNTNFKTVHGLDADGQYSS 190
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
ARDMA++ + D P ++ K + N N + L DG+KTG T ++G
Sbjct: 191 ARDMALIGQALIRDVPDEYATYKEKEFTFNNIRQMNRNGLLWDSSLAVDGIKTGHTASAG 250
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+VASA +G LI+ ++G R S LL+ GF + + +
Sbjct: 251 YNLVASATEGQMRLISAVMGGRTFKGRETESKKLLTWGFRFFETVAPLKTGKEFASEPVW 310
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++V T + + K ++ +
Sbjct: 311 FGDNDRVSLGVDKDVYITIPRGRMKDLKASYVLTNTELHAPLAKNQVVGSI 361
>gi|330818433|ref|YP_004362138.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
gladioli BSR3]
gi|327370826|gb|AEA62182.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
gladioli BSR3]
Length = 434
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 86/330 (26%), Positives = 152/330 (46%), Gaps = 15/330 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 65 TYMPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALSTKKI 124
Query: 75 MLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 125 SMEQIVTPSEAVRRVGTDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSES 184
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN ++ LG+S THF + +G+ HYTTA D+A LS R+ DFP Y + F +K
Sbjct: 185 QFVNMMNAEAQKLGMSGTHFADVNGMPDPQHYTTAGDLAKLSARLIRDFPDYYNIFSVKE 244
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILG 245
+ PN N + DG+KTG T A+G+ ++ASA + G + L++V++G
Sbjct: 245 FSYNNIRQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRALPGADGGTRRLVSVMMG 304
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTT 299
+ R + S +L+ G+ + Y+ ++ + ++ V
Sbjct: 305 ETKESDRVQDSMKMLNYGYSAFDAVRLYKGGQAVETPRVYKGKANSVQVGVQKDQFVTLP 364
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ Q+ + + +++ +
Sbjct: 365 KGVGDKLKPQVTLNTPLIAPLAEGQQVGTV 394
>gi|121592706|ref|YP_984602.1| penicillin-binding protein 6 [Acidovorax sp. JS42]
gi|120604786|gb|ABM40526.1| penicillin-binding protein 6 [Acidovorax sp. JS42]
Length = 387
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 102/352 (28%), Positives = 160/352 (45%), Gaps = 17/352 (4%)
Query: 1 MRQFLVII------AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M+ L + A+ + ++ + Y L+D G V+A D P A
Sbjct: 1 MKSLLSSLRTLACAALMAPAILWAQVPQPPEIAARNYMLVDVTAGQVLATKDIDAPVEQA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTKLMT Y+VF L+ KK L + +S+ A + P S + +D+ LK +IV+
Sbjct: 61 SLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMPGSRMFIDPKMQVPVDDLLKGMIVQ 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND VA+AE + T + FV+ MN +K LG++ T + N G+ + GH TTARD+A L+
Sbjct: 121 SGNDATVALAEGVGGTVENFVRLMNEQAKALGMTNTAYKNPEGLTEPGHTTTARDLATLA 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
R+ DFP+YMHY+ K +G N N + DG+KTG T A+G+ +VA+
Sbjct: 181 TRLMQDFPEYMHYYSTKQYRYEGTPASNSNNRNMLLFRDPSVDGLKTGHTAAAGYCLVAT 240
Query: 232 AIQ-----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQ 283
+ + G + L++++LGA N R S LL+ G+ K + +
Sbjct: 241 SKREFPNVGQRRLLSIVLGAASENARANESQKLLNWGYTAFDSVKLFDAGQAAATPAVWK 300
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + E + E K+ F K + K
Sbjct: 301 GTQSTLKIGRPEAIVITVPSGSAGKVTTEIVRKDPLVAPFTKGQAIGTLKVK 352
>gi|198246188|ref|YP_002216147.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|197940704|gb|ACH78037.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|326623893|gb|EGE30238.1| D-alanyl-D-alanine carboxypeptidase DacD [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
Length = 390
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 86/349 (24%), Positives = 150/349 (42%), Gaps = 21/349 (6%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQ 283
++ASA+ G + LIAV++GA R + + LL G N + + + +
Sbjct: 245 LIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSSKKVGSERIWYG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEKITLL 329
+ ++ + + + K K+ E+ +++ +
Sbjct: 305 DKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQRVGEI 353
>gi|254247085|ref|ZP_04940406.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
PC184]
gi|124871861|gb|EAY63577.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia cenocepacia
PC184]
Length = 436
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 85/342 (24%), Positives = 149/342 (43%), Gaps = 14/342 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ P + L+D + V+A D PASLTKLMTAY+VF
Sbjct: 61 FTGAPATYMPGAVPPPGVNARSWVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEA 120
Query: 69 LKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L +KK + +T S S + +++ + + +I++S ND A+A+AE
Sbjct: 121 LDKKKISMEQIVTPSDAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAEL 180
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E +FV MN+ + LG+ THF + +G+ HYTTA D+A LS + DFPQY
Sbjct: 181 VGGSEGQFVTMMNDEAGRLGMKGTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYS 240
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLI 240
F K + + N N + DG+KTG T A+G+ ++ASA + G + L+
Sbjct: 241 IFSEKEFKYNNIRQGNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRAIPGVDGQRRLV 300
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE- 295
+V++G + R + S +L+ G+ + Y+ + + +
Sbjct: 301 SVMMGEQKESERTQDSMKMLNYGYSAFDSVRLFKGGQAISTPRIYKGKDNTVQVGVKGDQ 360
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ T++ + + +++ +K K
Sbjct: 361 WATVPRGLGDKVKTEVDVNAPLIAPLTEGQQVGTVKIVADGK 402
>gi|163814026|ref|ZP_02205418.1| hypothetical protein COPEUT_00178 [Coprococcus eutactus ATCC 27759]
gi|158450475|gb|EDP27470.1| hypothetical protein COPEUT_00178 [Coprococcus eutactus ATCC 27759]
Length = 417
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 89/319 (27%), Positives = 140/319 (43%), Gaps = 11/319 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
K P L++ +G VI E D PAS+TK+MT + F + + K L + +S
Sbjct: 61 DIKSPSAILMEAESGQVIYEKNCDTAMAPASVTKVMTLLLTFEAIDDGKFSLDDTVVVSD 120
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S F+ G T+ + +K +I+ S ND AVA+AE + +E FV MN +K
Sbjct: 121 HAASMGGSQCFFESGEEQTVQDMIKCIIIASGNDAAVAMAEKIAGSEPAFVNMMNERAKE 180
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199
LG+ F NA G+ GH +ARD+A++S + T + Y I I K
Sbjct: 181 LGMENASFKNACGLDTSGHEMSARDIALMSRELITKHSEIFDYSGIWMDHITHKTARGDS 240
Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
NTN + + GA G+KTG+T + + + A+A + LIAVI+G + RN +
Sbjct: 241 RFDLVNTNKFLNMYTGATGLKTGYTSTAKYCMSATAERDGIDLIAVIMGGETKEMRNNDA 300
Query: 257 ASLLSMGFY---NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
LL G+ TD++ I + + N ++ K+
Sbjct: 301 CHLLDYGYSKCHKYTDKEIIKEKKLSVDKGTSDYVTIKTIPQFEAILLGSENADSVSKKI 360
Query: 314 KDKESHFIDFEKITLLKNK 332
E +K L
Sbjct: 361 DIPEKITAPVKKGDELGEV 379
>gi|332971504|gb|EGK10454.1| serine-type D-Ala-D-Ala carboxypeptidase [Kingella kingae ATCC
23330]
Length = 432
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 88/356 (24%), Positives = 153/356 (42%), Gaps = 28/356 (7%)
Query: 1 MRQFLVIIAMAMLS-------------NIFPFLSIA------ETNKLPYYTLLDTNTGHV 41
M++ L I+ L + K Y + D +G +
Sbjct: 36 MKKILSILICTTLLHTPVWANTASEPNVQAASAPVPLSSIQLPEIKAVAYLVQDLQSGQI 95
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+A+ D PASLTK+MTAY+VF L+ KK S++A S + G
Sbjct: 96 LAQANADQKIEPASLTKVMTAYLVFQALENKKITPDQTTKTSEHAWRQAGSRMFLELGKP 155
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+++ + + L+V+ AND AV++AE L +E +FV MN +K LG++ THF NA G+
Sbjct: 156 VSVQDLVHGLVVQLANDAAVSLAELLAGSEAEFVALMNAEAKRLGMTNTHFDNATGLSSQ 215
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
H TT +D+AILS + DFPQY + K N N + DG+ G+T
Sbjct: 216 THLTTVKDLAILSNALIRDFPQYYKIYSTKSFTYNTITQQNRNLLLFRDDNIDGLAAGYT 275
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+ G+N++AS+ + + +++++ GA +R S+ LL+ N + +
Sbjct: 276 NSGGYNLIASSKRDGRRVLSIVAGAASAESRATESSKLLNYALLNFDTQPMFQAGKEVST 335
Query: 282 QQNLSNEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ +++ V + + N + + + +K +L
Sbjct: 336 VKIFKGAQNSVAIGFGQDAYVTVPRNQQTNIKSFIDTNQ---PVLAPIKKGQVLGT 388
>gi|187927291|ref|YP_001897778.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12J]
gi|309780010|ref|ZP_07674763.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia sp. 5_7_47FAA]
gi|187724181|gb|ACD25346.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12J]
gi|308921180|gb|EFP66824.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia sp. 5_7_47FAA]
Length = 400
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 84/330 (25%), Positives = 145/330 (43%), Gaps = 15/330 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
A + L D +G V+ D PASLTKLMTAY+VF +++ K
Sbjct: 32 AMAQPVPAPQVAARSWMLTDVTSGQVLGGANMDERIEPASLTKLMTAYLVFEAVRDGKLK 91
Query: 76 LTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
IT ++ + S + G ++ + LI++S ND A+ +AE++ TE
Sbjct: 92 YDQMITPTETVRTVKTDESRMFLEAGKPASVREMTQGLIIQSGNDAALVLAEAVGGTETN 151
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
FV MN ++ LG+ THF NA G+ HY+TARD++IL+ + DFPQ ++ K
Sbjct: 152 FVMLMNREAERLGMKNTHFANAAGLPDPNHYSTARDLSILTAALIKDFPQDYKFYSQKEF 211
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGA 246
K N N + DG KTG T ++G+ +V SA + ++ L++VI+G
Sbjct: 212 TYNNIKQSNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGANRRLLSVIIGT 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE--VCTTQ 300
R + S +L+ G+ + D Y+ + ++E+ + +
Sbjct: 272 KSDAIRTQESLKVLNYGYQFFDTVRLYKAKEALQTPDVYKGQAKSVKLGVAEDKWITVPK 331
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ + +++ +K
Sbjct: 332 GAGARLKPVLERKDPLIAPIAQGQQLGTVK 361
>gi|110680629|ref|YP_683636.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter denitrificans OCh
114]
gi|109456745|gb|ABG32950.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter denitrificans OCh
114]
Length = 389
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 89/342 (26%), Positives = 152/342 (44%), Gaps = 14/342 (4%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
I+ A + + A + ++D TG V+ D P PAS++KLMT Y+
Sbjct: 2 FRILLAAFVLVASTLTAAAFETRASAAFVMDQTTGTVLLNKNADAPLPPASMSKLMTLYM 61
Query: 65 VFSFLKEKK----AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
F ++ K L + +S++A Y S+ + G T+++++ L+ +IV S ND
Sbjct: 62 AFEAVRRGKADGGLDLNERLPVSEHAQSYGGSSMFLRSGETVSVEDLLRGIIVVSGNDAC 121
Query: 121 VAIAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
V IAE+L E F + M ++ LG++ + F+NA G Q GH + RD+AIL+ R+
Sbjct: 122 VVIAEALSPDGTEYGFARMMTQRAQQLGMNNSVFINASGWPQTGHVMSMRDLAILADRLI 181
Query: 179 TDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
TDFP++ F + N N + +GADG+KTG T +G+ +V SA QG
Sbjct: 182 TDFPEFYPMFAETEFPFDNRVPSNSRNRNPVLTMGIGADGLKTGHTQEAGYGLVGSAKQG 241
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPN 291
D+ +I VI G R + S ++++ F R + D + +
Sbjct: 242 DRRIIFVITGLETTAARAQESQAIVNWAFRQFAMRDIGKAGQEFAKADVWMGSSPQVGLV 301
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+E++ + + + K L +
Sbjct: 302 AAEDMSVLMPALAEREIEAEVVFT-GPIEAPIAKGDPLGELV 342
>gi|222109487|ref|YP_002551751.1| serine-type d-ala-d-ala carboxypeptidase [Acidovorax ebreus TPSY]
gi|221728931|gb|ACM31751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax ebreus TPSY]
Length = 387
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 102/352 (28%), Positives = 160/352 (45%), Gaps = 17/352 (4%)
Query: 1 MRQFLVII------AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M+ L + A+ + ++ + Y L+D G V+A D P A
Sbjct: 1 MKSLLSSLRTFACAALMAPAILWAQVPQPPEIAARNYMLVDVTAGQVLATKDIDAPVEQA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTKLMT Y+VF L+ KK L + +S+ A + P S + +D+ LK +IV+
Sbjct: 61 SLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMPGSRMFIDPKMQVPVDDLLKGMIVQ 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND VA+AE + T + FV+ MN +K LG++ T + N G+ + GH TTARD+A L+
Sbjct: 121 SGNDATVALAEGVGGTVENFVRLMNEQAKALGMTNTAYKNPEGLTEPGHTTTARDLATLA 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
R+ DFP+YMHY+ K +G N N + DG+KTG T A+G+ +VA+
Sbjct: 181 TRLMQDFPEYMHYYSTKQYRYEGTPASNSNNRNMLLFRDPSVDGLKTGHTAAAGYCLVAT 240
Query: 232 AIQ-----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQ 283
+ + G + L++++LGA N R S LL+ G+ K + +
Sbjct: 241 SKREFPNVGQRRLLSIVLGAASENARANESQKLLNWGYTAFDSVKLFDAGQAAATPAVWK 300
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + E + E K+ F K + K
Sbjct: 301 GTQSTLKIGRPEAIVITVPSGSAGKVTTEIVRKDPLVAPFTKGQAIGTLKVK 352
>gi|83941609|ref|ZP_00954071.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter
sp. EE-36]
gi|83847429|gb|EAP85304.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter
sp. EE-36]
Length = 502
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 99/333 (29%), Positives = 161/333 (48%), Gaps = 6/333 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L I+A + I P ++A ++D TG V+ D +PASLTK+MT Y+
Sbjct: 13 LFILAAIWILLILPLSAMAAP---YAAYVIDARTGEVLHSRNADTRLHPASLTKMMTLYI 69
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F +K + L + + I+ +A+ PPS K G T+ L ++ VKSAND A AI
Sbjct: 70 AFEAIKRGEISLDSKVKITSHAASEPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAIG 129
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E++ +E KF + MN T+K LG++ T F NAHG+ + GH +TA DM I+ + D P+Y
Sbjct: 130 EAIEGSEAKFARRMNRTAKALGMTNTTFKNAHGLTESGHMSTAHDMTIMGRHLLYDHPEY 189
Query: 185 MHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ F + +K +TN ++ GADG+KTG+T A+GFN+ ASA +G++ +I +
Sbjct: 190 YNLFSRITADAGVRKVSHTNRRFLSSYKGADGIKTGYTRAAGFNLTASAERGNERIIVTV 249
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY--QQNLSNEVPNISEEVCTTQK 301
G + RN A L+ +GF + K Y ++ + +V
Sbjct: 250 FGGTSTSARNAKVAELMDLGFRRAPSSAPLKKPSKPAYADVEDTPVASDGAAGKVIRLVG 309
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + + ++ + I
Sbjct: 310 AVTTSKRPTLRPGHQPQVVVATAEVPQATSPIL 342
>gi|241661811|ref|YP_002980171.1| serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12D]
gi|240863838|gb|ACS61499.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ralstonia pickettii 12D]
Length = 400
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 84/330 (25%), Positives = 145/330 (43%), Gaps = 15/330 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
A + L D +G V+ D PASLTKLMTAY+VF +++ K
Sbjct: 32 AMAQPVPAPQVAARSWMLTDVTSGQVLGGANMDERIEPASLTKLMTAYLVFEAVRDGKLK 91
Query: 76 LTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
IT ++ + S + G ++ + LI++S ND A+ +AE++ TE
Sbjct: 92 YDQMITPTETVRTVKTDESRMFLEAGKPASVREMTQGLIIQSGNDAALVLAEAVGGTETN 151
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
FV MN ++ LG+ THF NA G+ HY+TARD++IL+ + DFPQ ++ K
Sbjct: 152 FVMLMNREAERLGMKNTHFANAAGLPDPNHYSTARDLSILTAALIKDFPQDYKFYSQKEF 211
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGA 246
K N N + DG KTG T ++G+ +V SA + ++ L++VI+G
Sbjct: 212 TYNNIKQSNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGANRRLLSVIIGT 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE--VCTTQ 300
R + S +L+ G+ + D Y+ + ++E+ + +
Sbjct: 272 KSDAIRTQESLKVLNYGYQFFDTVRLYQAKEALQTPDVYKGQAKSVKLGVAEDKWITVPK 331
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ + +++ +K
Sbjct: 332 GAGARLKPVLERKDPLIAPIAQGQQLGTVK 361
>gi|225023258|ref|ZP_03712450.1| hypothetical protein EIKCOROL_00110 [Eikenella corrodens ATCC
23834]
gi|224943903|gb|EEG25112.1| hypothetical protein EIKCOROL_00110 [Eikenella corrodens ATCC
23834]
Length = 414
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 88/313 (28%), Positives = 143/313 (45%), Gaps = 5/313 (1%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
K Y + D +G ++A + + PASLTKLMTAY+VF L+E K T+S
Sbjct: 58 PEIKASAYAVYDAQSGQMLASHKLNEHIEPASLTKLMTAYLVFKALEEGKLKPDQTFTVS 117
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + S + +D+ LK +IV+S ND ++ +AE++ +E +FVQ MN +K
Sbjct: 118 EQGWKAEGSRMFLDPKTPARVDDLLKGVIVQSGNDASITLAEAVAGSEAQFVQLMNAEAK 177
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
LG++ THF N+ G+ HYT+ +D+ LS I D+PQY + I+ PN
Sbjct: 178 RLGMNDTHFENSTGLPGAQHYTSVQDLITLSAAIIHDYPQYYPLYAIQSYSYNNITQPNR 237
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
N + DGMKTG T ++G+N+VAS+ + + +I+V++G R S+ LL+
Sbjct: 238 NLLLYRDPDVDGMKTGHTDSAGYNLVASSKRNGRRVISVVVGTESMQARAAESSKLLNWA 297
Query: 264 FYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ K Y+ + + T Q + +
Sbjct: 298 LQSYDTPKLYEAETAISQVKVYKGADNAVNVGFIDATYITVPHGQAAQLQPVL-ETVQPV 356
Query: 320 FIDFEKITLLKNK 332
K +L
Sbjct: 357 LAPISKGQVLGTV 369
>gi|167561357|ref|ZP_02354273.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
oklahomensis EO147]
Length = 381
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 84/329 (25%), Positives = 147/329 (44%), Gaps = 15/329 (4%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
P + L+D + V+A D PASLTKLMTAY+VF L KK +
Sbjct: 13 APGAVPPPGVNARSWVLVDATSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKITM 72
Query: 77 TTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+T S+ S + +++ + + +I++S ND A+A+AE + +E +F
Sbjct: 73 EQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQF 132
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MN ++ LG++ THF + +G+ HYTTA D+A LS + D+P Y F +K
Sbjct: 133 VNMMNAEAQRLGMTGTHFADVNGMPDPQHYTTAGDLAKLSTHLIRDYPDYYSIFSVKDFT 192
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGAL 247
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 193 YNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGATDATRRLVTVMMGET 252
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQK 301
+ R + S +L+ G+ + Y+ +N + ++ + +
Sbjct: 253 KESDRVQDSMKMLNYGYTAFDSVRLYKAGQAIDTPRIYKGKSNNVQVGVKKDQFITVPRG 312
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ + D + + +K
Sbjct: 313 MADKVKPEVALNAPLIAPLADGQAVGSVK 341
>gi|295109899|emb|CBL23852.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
Length = 394
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 89/356 (25%), Positives = 149/356 (41%), Gaps = 22/356 (6%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHP 50
M++ L +I +LS IFP + + L++ TG ++ E +
Sbjct: 1 MKKRHLRITGLFLIICMILSTIFPVRAETESISPEILAASGILMEVETGKILYEKDSNTR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PAS+TK+MT ++F L K L +T S +A S ++G +++ +K
Sbjct: 61 RCPASVTKVMTLLLIFEQLDSGKLSLNDTVTTSAHAKSMGGSQVFLEEGEQQSVETMIKC 120
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARD 169
+++ S ND +VA+AE + +E+ FV MN ++ LG+ THF++ G+ HYT+A D
Sbjct: 121 IVIASGNDASVAMAEHIAGSEQSFVNRMNQRAEELGMKNTHFVDCCGLTDSDEHYTSAYD 180
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFT 221
+A++S + PQ Y I I NTN + T+ G G+KTG T
Sbjct: 181 IALMSRELIRKHPQIFEYSSIWMENITHVTAQGTKKFGLTNTNRLIRTYPGCKGLKTGST 240
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN---KTDRKKINYIIK 278
+ F + A A + SL++V++ A D R K +++LL GF D
Sbjct: 241 SKAKFCLSAVAERDGLSLLSVVMAAPDYKARLKDASALLDYGFDRCSLYIDENPEPLPEI 300
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ S ++ + KE K + I
Sbjct: 301 TIQKGISSKVSLKYADTFRYVSTDGEKITAPKKELKLPSKAEAPVAADSQAGELIY 356
>gi|33152983|ref|NP_874336.1| D-alanyl-D-alanine carboxypeptidase fraction A [Haemophilus ducreyi
35000HP]
gi|33149208|gb|AAP96725.1| penicillin-binding protein 5 [Haemophilus ducreyi 35000HP]
Length = 393
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 91/352 (25%), Positives = 153/352 (43%), Gaps = 18/352 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLS---------IAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
++ I++ L+ ++ A Y L+D N+G V+A P +
Sbjct: 3 KRLFTSISLVALAFSHSAVAVDASVEFGISAPQLNAQTYVLMDYNSGAVLASLNPQQRQH 62
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALK 109
PASLTK+MT+YVV +K+ K + +T+S+NA + +++ + ++
Sbjct: 63 PASLTKMMTSYVVGDAIKQGKVKNSDMVTVSENAWARKFPGSSLMFLDLNTQVSVADLMR 122
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
LI+ S ND AVA+AE +++ F+ MN + GL THF HG+ + Y++A D
Sbjct: 123 GLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLKNTHFTTVHGLDEESQYSSALD 182
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-WAVGTFLGADGMKTGFTCASGFN 227
MAI+ + D P+ + K + KK PN N + DGMKTG T +G+N
Sbjct: 183 MAIIGAHVIRDQPEEYKIYSEKEFKYNIKKPQPNRNGLLWDKTMNVDGMKTGHTNQAGYN 242
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
+VASA + LI+V++G R S LL GF N K + Y
Sbjct: 243 LVASATNSNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLPAGQTVSEQGVYYG 302
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + T + + +++ + K ++ I +
Sbjct: 303 ESNKVQLGTLTDSFVTIPKGKTTDLKVRHELTPKHLEAPLTKGQVVGKVIYQ 354
>gi|308069568|ref|YP_003871173.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine
carboxypeptidase) [Paenibacillus polymyxa E681]
gi|305858847|gb|ADM70635.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine
carboxypeptidase) [Paenibacillus polymyxa E681]
Length = 404
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 85/358 (23%), Positives = 147/358 (41%), Gaps = 25/358 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFL-----------------SIAETNKLPYYTLLDTNTGHVIAE 44
++ + I +++ + + + L+D +TG VI E
Sbjct: 10 KKVVAFILACLVALTAVPVGGWAEESRPESKTKEGSAAELAPEALSAILMDADTGTVIYE 69
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
PAS+TK+MT + +++ K LT + S+ AS S + G MT+
Sbjct: 70 KNSREKLPPASITKIMTMLLTMEAIQDGKLKLTDKVRASEYASSMGGSQIFLEPGEEMTV 129
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
D LK + + S ND +VA+AE + +E+ FV MN + LGL THF N +G+ HY
Sbjct: 130 DEMLKGIAMASGNDASVAMAEKIAGSEQAFVGMMNAKVQQLGLKDTHFANCNGLPVENHY 189
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGL----EIKGKKYPNTNWAVGTFLGADGMKTGF 220
++A D+A++S + + + +K NTN V + GADG+KTG+
Sbjct: 190 SSAHDIAVMSRELLKYPQITKYTGAYQDYLRKSSVKPFWLVNTNKLVRFYTGADGLKTGY 249
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T + F + A+A + ++AV+LG + RN +S+ F T +
Sbjct: 250 TAEAKFCLSATAKRDGLRVVAVVLGEPNTKIRNNEVSSMFDYAFSQYTMKSIYKPGELLG 309
Query: 281 YQQNLSNEVPNISEE----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ +P + + K+ N T E + S + +
Sbjct: 310 SVKVEKGVLPELKIQADRSYSVLVKKGGNKQTLRHELQLPPSLKAPVRAGDPIGKLVV 367
>gi|149916443|ref|ZP_01904962.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
AzwK-3b]
gi|149809713|gb|EDM69567.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
AzwK-3b]
Length = 482
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 101/324 (31%), Positives = 168/324 (51%), Gaps = 4/324 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R ++ A + + P +IA ++D +G V+ + D +PASLTK+MT
Sbjct: 10 RWSVIAFATIWMLVVVPLSAIAAP---YAAMVMDARSGEVLHAHNADTRLHPASLTKMMT 66
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
YVVF ++ + L T +TIS++A+ PPS + G + L + ++ +KSAND A
Sbjct: 67 LYVVFEAVENGEIGLDTMVTISQHAASEPPSKLGLRAGQKIRLRHLIRAAAIKSANDAAT 126
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+AE++ +E +F + MN T+K +G++ T F NAHG+ + GH +TARDM IL + D+
Sbjct: 127 ALAEAIEGSEARFARRMNRTAKAMGMTRTTFKNAHGLTESGHLSTARDMTILGRHVFYDY 186
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P+Y + F + +K +TN A + ++ GADG+KTG+T A+GFN+VASA +G + +I
Sbjct: 187 PEYYNLFSRITADAGVRKVYHTNRALLNSYRGADGIKTGYTRAAGFNLVASAERGGERII 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
A + G +RN A LL +GF R ++ + Y + + P+ +
Sbjct: 247 ATVFGGNSTASRNAKVAELLDLGFRKAPSRVALHKPRRPAYAGRMQDSAPDGAFGKTVRL 306
Query: 301 KEIINYNTQMKEAKDKESHFIDFE 324
++
Sbjct: 307 ATAAAVKRSLRPQMRPSVEPAPVV 330
>gi|91977185|ref|YP_569844.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisB5]
gi|91683641|gb|ABE39943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisB5]
Length = 432
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 81/319 (25%), Positives = 138/319 (43%), Gaps = 8/319 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ + P L+D +G V+ E D P+S+ KLMT +VF L + + LT
Sbjct: 64 VAGGYETEAPTAILIDAESGSVLFEKNADELRPPSSMLKLMTVELVFHLLTKGEIKLTDD 123
Query: 80 ITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
IS+NA S + S +++D+ L+ I++S ND +A+AE + +E+ F
Sbjct: 124 YRISENAWRRGGAPAGSSTMFAEIHSRVSIDDLLRGAIIQSGNDSCIALAEGIAGSEQAF 183
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
+ M ++ +GL+ + F N++G+ G+ + R++ L+ + +P Y F K
Sbjct: 184 AERMTKRAREIGLAQSTFANSNGLPDPGNKMSVRELGRLARHLIQTYPDYYKLFGEKEFT 243
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ N N + T GADG+KTG+T G+ +V SA+Q LI V+ G D + R
Sbjct: 244 WNKIRQTNRNPLLNTMPGADGLKTGYTKDGGYGMVGSAVQNGTRLIVVVNGVEDADDRAS 303
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
+ LL GF N R Y + E + + ++ N K
Sbjct: 304 EAKKLLEWGFRNFESRPLFAAQATVGYARVFGGEKRYVGLTPVEPVRVMVRKNGSDKLLA 363
Query: 315 DKE---SHFIDFEKITLLK 330
E +
Sbjct: 364 RIVYTGPIAAPVEAGHRIG 382
>gi|186474981|ref|YP_001856451.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phymatum
STM815]
gi|184191440|gb|ACC69405.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia phymatum
STM815]
Length = 409
Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats.
Identities = 90/351 (25%), Positives = 159/351 (45%), Gaps = 17/351 (4%)
Query: 3 QFLVIIAM--AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+F + A+ A++++ + L+D + V+A PD PASLTKLM
Sbjct: 25 KFALGFALPAALVASTAFAQVPPPGVNARSWVLVDATSNQVLASGNPDERVEPASLTKLM 84
Query: 61 TAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
TAY+ F L KK + I S+ S + +T+ + + +I++S ND
Sbjct: 85 TAYLTFEALASKKITMDQSINPSEAVRRVRNDESRMFIEANKPVTVHDLVYGMIIQSGND 144
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A+A+AE + +E +FV MN ++ LG+ THF + +G+ HYTTA D+AILS R+
Sbjct: 145 AAIALAELVGGSEAQFVNMMNAEAQKLGMKNTHFADVNGMPDPQHYTTAGDLAILSARLI 204
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ---- 234
D+P Y + F +K K PN N + DG+KTG T A+G+ ++ASA +
Sbjct: 205 RDYPDYYNIFSVKEFTYNKIKQPNRNRLLWIDPTVDGLKTGHTQAAGYCLIASAKRSLPG 264
Query: 235 ---GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSN 287
+ L+ V++G + R + S +L+ G+ + Y+ +
Sbjct: 265 VPDASRRLVTVMMGEQKEHDRVQDSLKMLNYGYSAYDAVRLYKANQVVETPRVYKGSQDT 324
Query: 288 EVPNISEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ + + + Q++ A + +++ +K K
Sbjct: 325 VKLGVTTDQYITLPKGMADKAKPQIEHADPLIAPIAQGQQVGTVKFVADGK 375
>gi|325265494|ref|ZP_08132216.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
gi|324029273|gb|EGB90566.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
Length = 423
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 102/331 (30%), Positives = 155/331 (46%), Gaps = 11/331 (3%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P L++ +TG VI E D PAS+TK+MT ++F L + K
Sbjct: 58 AADTQTAGPEVSAPSAVLMEASTGEVIFEKDADTARPPASVTKIMTMLLIFDALADGKIK 117
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L +T S+ A+ S + G T T+D LK + V SAND VA+AE +C E++FV
Sbjct: 118 LEDQVTTSEFAASMGGSQVFLEPGETQTVDTMLKCISVASANDACVAMAEYICGNEEEFV 177
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
+ MN +K LG+ THF+N +G+ GH TTARD+A++S + T +PQ Y I I
Sbjct: 178 KQMNERAKGLGMENTHFVNCNGLDVDGHVTTARDIALMSREMITKYPQIHDYCMIWMENI 237
Query: 196 KGKK--------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
NTN V + A G+KTG T + F + A+A + D +IAVI+ A
Sbjct: 238 THTTKKGTTEFGLTNTNKLVRQYEYATGLKTGSTGLAKFCVSATAKKNDIEMIAVIMAAG 297
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVP-NISEEVCTTQKEII 304
D R K + +LL+ GF K + + + + V ++
Sbjct: 298 DSKARFKDATTLLNYGFGKCQVYKDESPEKLKDLEVKGGVEDTVHCEYADSFSYLDTSGA 357
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
N + K+ K K+S +K + I +
Sbjct: 358 NLSGITKKLKVKKSLDAPLKKGDKAGSLIYE 388
>gi|313114949|ref|ZP_07800445.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622742|gb|EFQ06201.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 368
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 88/324 (27%), Positives = 143/324 (44%), Gaps = 9/324 (2%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
A L+D TG ++ E D AS+TK+MT + F + + + +
Sbjct: 7 AAAQPALELPCRAACLIDQQTGTILYEKNADQQMPIASITKVMTLLLTFEAVHDGRIAMD 66
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
T + +S++A S + G TLD +K + V SAND AVA+AE + +E FVQ
Sbjct: 67 TLVPVSEHAYHMGGSQIWLEPGEQFTLDEMIKAICVSSANDAAVAVAELVGGSEPGFVQM 126
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ--YMHYFQIKGLEI 195
MN + LG+ T F NA G+ GH +TA D+AI+S I P+ + L
Sbjct: 127 MNARAAELGMVNTTFHNACGLDTEGHLSTAHDVAIMSREILNTCPEVLHYTGIWTDTLRG 186
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ NTN + + G G+KTG T +G I ASA + LIAV+LG+L + R
Sbjct: 187 GATQLVNTNKLLKRYNGITGLKTGTTSGAGVCISASATRDGLDLIAVVLGSLSSSERFTA 246
Query: 256 SASLLSMGFYNKTDRKK---INYIIKDFYQQNLSNEVPN----ISEEVCTTQKEIINYNT 308
+ +LL GF + + + + VP + E + ++
Sbjct: 247 ATTLLDYGFAAYAAVPLPAMEDRPLLIKVKGSAEESVPLDYTALPETLLMPKENAAALTA 306
Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332
Q+ ++ E+ + + ++
Sbjct: 307 QLDLPQELEAPVQLGQTVGTVRIL 330
>gi|110804719|ref|YP_688239.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri 5
str. 8401]
gi|110614267|gb|ABF02934.1| penicillin-binding protein 5 [Shigella flexneri 5 str. 8401]
Length = 427
Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 34 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 93
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 94 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 153
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 154 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 213
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 214 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 273
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 274 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 333
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 334 WFSDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 385
>gi|317047508|ref|YP_004115156.1| beta-lactamase [Pantoea sp. At-9b]
gi|316949125|gb|ADU68600.1| Beta-lactamase [Pantoea sp. At-9b]
Length = 401
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 91/319 (28%), Positives = 143/319 (44%), Gaps = 11/319 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L+D N+G V+AE D +PASLTK+MT+YV+ LK K +TI +
Sbjct: 37 QIDAKAWVLMDYNSGKVLAEANADQRLDPASLTKMMTSYVIGQALKAGKIHDDDMVTIGQ 96
Query: 85 NASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+A K G + + K ++++S ND +A+A+ + ++ F+ M
Sbjct: 97 DAWATGNPKLKGSSLMFLKPGDRIPVAELNKGIVIQSGNDACIAMADYVAGSQDSFIGLM 156
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
NN +K GL THFM HG+ G Y+TARDMAI+ R+ +D P+ + K
Sbjct: 157 NNYAKAFGLQNTHFMTVHGLDADGQYSTARDMAIIGQRLISDVPEEYALNKQKEFTFNNI 216
Query: 199 KYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
K N N + L DG+KTG T +G N+V+SA GD LI+V+LGA R + S
Sbjct: 217 KQMNRNRLLWSSNLKVDGIKTGHTSGAGNNLVSSATDGDMRLISVVLGAETDALRFRESE 276
Query: 258 SLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
LL+ GF I + + ++++ T + N +
Sbjct: 277 KLLTWGFRFFDTVTPIKADKPFAQQRVWFGDRKQVNLGVAKDASVTIPKGQMNNLKASYT 336
Query: 314 KDKESHFIDFEKITLLKNK 332
+K ++
Sbjct: 337 LTSPQLEAPLKKNQVVGTI 355
>gi|121603114|ref|YP_980443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Polaromonas
naphthalenivorans CJ2]
gi|120592083|gb|ABM35522.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Polaromonas naphthalenivorans CJ2]
Length = 402
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 100/350 (28%), Positives = 155/350 (44%), Gaps = 20/350 (5%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
V++ L Y LLD ++A D P PASLTKLMT Y+
Sbjct: 18 FVLLVSVALPAAHAQAPQVPEIAARSYLLLDVTANQILAAKDIDSPVEPASLTKLMTEYL 77
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
VF LK KK L +S+ A + P S + +++ +K +IV+S ND +A+A
Sbjct: 78 VFDALKSKKITLQQTFGVSQRAWKMPGSRMFIDPKMQVPVEDLIKGMIVQSGNDATMALA 137
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + T + FV+ MN +K LG+ +T + N G+ + GH TTARD++ILS R+ +DFP Y
Sbjct: 138 EGVGGTAEHFVELMNQQAKALGMKSTSYKNPEGLTEAGHITTARDLSILSTRLMSDFPDY 197
Query: 185 MHYFQIKGLEI---KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ------- 234
+ Y IK N N + DG+KTG T A+G+ ++A+A +
Sbjct: 198 IGYSAIKKYRYPGTPATNDTNRNTLLFRDPTVDGLKTGHTNAAGYCMIATAKREFPNLGA 257
Query: 235 ----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSN 287
G + L+A++LG + R S LL+ G+ K + + +
Sbjct: 258 AGKPGGRRLLAIVLGTTSDSARATESQKLLNWGYTAFEAVKLFDAGQAVVTPAVWKGKDA 317
Query: 288 EVPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
V E V T TQ+ + + F + + LK +
Sbjct: 318 VVKLGRPEAIVVAVTAGSASRLKTQVARPEPLVAPFKKGQPVGSLKIMLG 367
>gi|163738564|ref|ZP_02145978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Phaeobacter gallaeciensis
BS107]
gi|161387892|gb|EDQ12247.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis
BS107]
Length = 396
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 83/338 (24%), Positives = 146/338 (43%), Gaps = 8/338 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A +L ++ + A + +LD T V+ D PAS++KLMT YV
Sbjct: 14 LTCAAGLLVSLSALSAAAFDTRARAAYVLDQETDTVLLAKNADLALPPASMSKLMTLYVA 73
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F +++ + L + +S++A Y S + +++ L+ +IV S ND V +AE
Sbjct: 74 FEAIRDGRLTLDERLPVSEHAMSYKGSTMFLNTQDRVRVEDLLRGIIVLSGNDACVVLAE 133
Query: 126 SLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
+L E F ++M ++ +G+ + F N++G GH + D+AIL+ ++ DFPQ
Sbjct: 134 ALSPDGTEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVEDLAILAEKLIEDFPQ 193
Query: 184 YMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
Y F + E N N +G +GADG+KTG T +G+ +V SA QGD+ +I
Sbjct: 194 YYPLFAEREFEFDGRAPSNVRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAAQGDRRVI 253
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVC 297
VI G R + + ++++ F + + + + V + E
Sbjct: 254 FVITGLDSTTARAEEAEAIVNWSFRQFAKKTVAKAGVPVAEAEVWRGAEATVGLVPAEDL 313
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ E EK L + +
Sbjct: 314 NVLLPALAGREITGEVVYTGPIDAPIEKGQKLAELVLQ 351
>gi|163743049|ref|ZP_02150432.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis
2.10]
gi|161383732|gb|EDQ08118.1| D-alanyl-D-alanine carboxypeptidase [Phaeobacter gallaeciensis
2.10]
Length = 396
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 83/338 (24%), Positives = 146/338 (43%), Gaps = 8/338 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A +L ++ + A + +LD T V+ D PAS++KLMT YV
Sbjct: 14 LTCAAGLLVSLSALSAAAFDTRARAAYVLDQETDTVLLAKNADLALPPASMSKLMTLYVA 73
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F +++ + L + +S++A Y S + +++ L+ +IV S ND V +AE
Sbjct: 74 FEAIRDGRLTLDERLPVSEHAMSYKGSTMFLNTQDRVRVEDLLRGIIVLSGNDACVVLAE 133
Query: 126 SLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
+L E F ++M ++ +G+ + F N++G GH + D+AIL+ ++ DFPQ
Sbjct: 134 ALSPDGTEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVEDLAILAEKLIEDFPQ 193
Query: 184 YMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
Y F + E N N +G +GADG+KTG T +G+ +V SA QGD+ +I
Sbjct: 194 YYPLFAEREFEFDGRAPSNVRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAAQGDRRVI 253
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVC 297
VI G R + + ++++ F + + + + V + E
Sbjct: 254 FVITGLDSTTARAEEAEAIVNWSFRQFAKKTVAKAGVPVAEAEVWRGAEATVGLVPAEDL 313
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ E EK L + +
Sbjct: 314 NVLLPALAGREITGEVVYTGPIDAPIEKGQKLAELVLQ 351
>gi|301154770|emb|CBW14233.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Haemophilus parainfluenzae T3T1]
Length = 395
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 94/349 (26%), Positives = 146/349 (41%), Gaps = 14/349 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-----SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+++ ++ + S Y L+D N+G V+A PD PAS
Sbjct: 8 LKKIVLFSGLMAASTFAAAEDLQYGIAVPEVNAQTYVLMDYNSGAVLASLNPDQRQYPAS 67
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLI 112
LTK+MT+YVV + LK+ K +TI ++A S +++ + K +I
Sbjct: 68 LTKMMTSYVVGAALKQGKIHNEDMVTIGESAWGRNFPDSSKMFLNLNQQVSVGDLNKGII 127
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND VA+AE + T FV MN + GL T+F HG+ Y+TARDMAI
Sbjct: 128 IVSGNDACVAVAEHISGTVANFVDTMNKYVQQFGLKNTNFTTPHGLDDPNQYSTARDMAI 187
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
+ I D P+ + K K PN N + DGMKTG T +G+N+VAS
Sbjct: 188 IGAHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVAS 247
Query: 232 AIQ-GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLS 286
A + LI+V++G R S LL GF N K K Y +
Sbjct: 248 ATSPNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETLKAHKANEKISTQSVYYGDKG 307
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ ++ T + + + + D + K ++ + +
Sbjct: 308 EIQLGLLQDGFITVPKGKQADLKARYELDNKYLQAPLTKGQVVGKIVYQ 356
>gi|126725140|ref|ZP_01740983.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales
bacterium HTCC2150]
gi|126706304|gb|EBA05394.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales
bacterium HTCC2150]
Length = 452
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 102/320 (31%), Positives = 161/320 (50%), Gaps = 6/320 (1%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ A+ ++ ++D +G V+ D +PASLTK+MT YV F
Sbjct: 1 MLCALFLAPISAIAAP-----YAAMVIDARSGEVLHSRNADSRLHPASLTKMMTLYVTFE 55
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+++ + L T + ISK A+ PPS + G + L ++ VKSAND A A+ E++
Sbjct: 56 AIRKGEISLDTRVRISKKAAAEPPSKLGLQAGQRIQLRYLIRAASVKSANDAATALGEAV 115
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + MN T+K LG+S T F NAHG+ + GH +TARDM L R+ D+PQY +
Sbjct: 116 SGSEAAFARRMNRTAKALGMSRTTFKNAHGLTESGHLSTARDMTTLGRRLFFDYPQYYNL 175
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
F + + KK NTN + ++ G+DG+KTG+T A+GFN+VASA++G++ +IA + G
Sbjct: 176 FSRRTTDAGVKKVNNTNTRFLNSYRGSDGIKTGYTNAAGFNLVASAVRGNERIIATVFGG 235
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
RN A LL +GF K+ Y ++ + + + +
Sbjct: 236 RSTANRNAKVAELLDLGFRRAPSTSKVIKPNAPVYGNDVVAGGKGKTIRLVMAVNKSLRP 295
Query: 307 NTQMKEAKDKESHFIDFEKI 326
++ AK E I
Sbjct: 296 KSRPITAKPTEETMIAVADG 315
>gi|255261606|ref|ZP_05340948.1| D-alanyl-D-alanine carboxypeptidase [Thalassiobium sp. R2A62]
gi|255103941|gb|EET46615.1| D-alanyl-D-alanine carboxypeptidase [Thalassiobium sp. R2A62]
Length = 389
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 84/338 (24%), Positives = 148/338 (43%), Gaps = 8/338 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+ ++ ++ + ++D TG ++ E D PAS++KLMT Y+
Sbjct: 8 VFATIAVVVFGASAAIAQNFATQATAAIVIDQTTGTLLMEKNADEALPPASMSKLMTLYM 67
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F + + + L + +S++A Y S K+G + +++ ++ +IV S ND IA
Sbjct: 68 AFEAVSDGRLRLDEELPVSQHAMNYGGSTMFLKRGERVKVEDLIRGIIVLSGNDACAVIA 127
Query: 125 ES--LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
E+ TE F + M ++ LG+ + F N++G Q GH + RD++IL+ R+ TD+P
Sbjct: 128 EALSTDGTEAGFGRMMTARARELGMMNSTFTNSNGWPQAGHRMSMRDLSILADRLITDYP 187
Query: 183 QYMHYFQIKGLEIKGKKYP---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
Y F K K+ N N +G +GADG+KTG T +G+ +V SA QG++ +
Sbjct: 188 TYYPLFSQKEFMFDEKESKNRLNRNPLLGLGIGADGLKTGHTNEAGYGLVGSAKQGNRRI 247
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEEV 296
I VI G R + S +++ F R K + V + E
Sbjct: 248 IFVITGLDSAAARAEESEKIVNWAFRQFVHRDITEAGTKIAEADVWMGDVDRVGLTTVED 307
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ ++ + E E+ L +
Sbjct: 308 LSLLVPVLKQDDITAEVVYDGPIEAPIEEGAQLAELVI 345
>gi|24112068|ref|NP_706578.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri
2a str. 301]
gi|30062179|ref|NP_836350.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella flexneri
2a str. 2457T]
gi|82543078|ref|YP_407025.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella boydii
Sb227]
gi|24050895|gb|AAN42285.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
protein 5 [Shigella flexneri 2a str. 301]
gi|30040424|gb|AAP16156.1| D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding
protein 5 [Shigella flexneri 2a str. 2457T]
gi|81244489|gb|ABB65197.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Shigella boydii
Sb227]
gi|313649723|gb|EFS14147.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri 2a str.
2457T]
gi|332760998|gb|EGJ91286.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri
4343-70]
gi|332763369|gb|EGJ93609.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-671]
gi|332768266|gb|EGJ98451.1| penicillin-binding protein 6 [Shigella flexneri 2930-71]
gi|333007457|gb|EGK26937.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri VA-6]
gi|333007869|gb|EGK27345.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-218]
gi|333010043|gb|EGK29478.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-272]
gi|333020876|gb|EGK40136.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-227]
gi|333021546|gb|EGK40796.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri K-304]
Length = 403
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 85/352 (24%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + +K ++
Sbjct: 310 WFSDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 361
>gi|323499952|ref|ZP_08104910.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326]
gi|323314969|gb|EGA68022.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sinaloensis DSM 21326]
Length = 392
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 91/355 (25%), Positives = 152/355 (42%), Gaps = 21/355 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP------------FLSIAETNKLPYYTLLDTNTGHVIAENYPD 48
M++ +I ++ + + A Y LLD ++G V+A+ +
Sbjct: 1 MKKTTLIKSVFASTVALSATFATTAFATPIVVPDAPQIAAKGYVLLDYHSGKVLAQKEMN 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLD 105
+PASLTK+MT+YV+ L+ L +TISKNA S + G+T+ ++
Sbjct: 61 TKLSPASLTKMMTSYVIGQELERGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVE 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ + +I++S ND VA+AE + +E FV MN + +G+ THF N HG+ Y+
Sbjct: 121 DLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWANTIGMKDTHFANVHGLDNPNLYS 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
T DMA+L + D P + K G N N + DG+KTG T +
Sbjct: 181 TPYDMALLGSALIRDVPDEYRIYSDKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNA 240
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDF 280
G+++V+SA +G L+AV++G N R S LLS GF +
Sbjct: 241 GYSLVSSATEGKMRLVAVVMGTKSANARKSESKKLLSYGFRFFETVAPHKAGETFVEEKI 300
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + ++ T N + +KE K ++ +
Sbjct: 301 WMGDKDTVALGLDQDTYVTLPRGQAKNLKASFVLEKE-LEAPISKGEVVGKLYYQ 354
>gi|165924684|ref|ZP_02220516.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|166009807|ref|ZP_02230705.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166211384|ref|ZP_02237419.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167419833|ref|ZP_02311586.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167424129|ref|ZP_02315882.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|270487038|ref|ZP_06204112.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27]
gi|294503318|ref|YP_003567380.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Z176003]
gi|165923744|gb|EDR40876.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165991203|gb|EDR43504.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166207155|gb|EDR51635.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166962574|gb|EDR58595.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167056978|gb|EDR66741.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|262361357|gb|ACY58078.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis D106004]
gi|262365105|gb|ACY61662.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis D182038]
gi|270335542|gb|EFA46319.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27]
gi|294353777|gb|ADE64118.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Z176003]
Length = 400
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 149/323 (46%), Gaps = 11/323 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +
Sbjct: 32 PAAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLV 91
Query: 81 TISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
T+ K+A K G + + + K ++++S ND ++A+A+ + ++ F
Sbjct: 92 TVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSF 151
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K
Sbjct: 152 VGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFT 211
Query: 195 IKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ N N + DGMKTG+T +G+N+VASA G LI+V+LGA R
Sbjct: 212 FNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRF 271
Query: 254 KVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
S LL+ GF I + + + S ++E+ T + N +
Sbjct: 272 SESEKLLTWGFRFYETVVPIKSTKPFVTEKVWLGDNSQVELGVAEDAAITIPKGQMKNLK 331
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
++ K ++
Sbjct: 332 ASYTLNQTELRAPLAKHQVVGTI 354
>gi|220932948|ref|YP_002509856.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Halothermothrix orenii H 168]
gi|219994258|gb|ACL70861.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Halothermothrix orenii H 168]
Length = 388
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 86/344 (25%), Positives = 152/344 (44%), Gaps = 13/344 (3%)
Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++ + II ++++ + + + L+D +G V+ E D PAS+T
Sbjct: 1 MKKIATTVAIIIVSLILMVNNARAGGFDIGVDAAILIDAESGQVLYEKNADKKLPPASIT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT + + + L + +T+S+ A S + + L + LK + + SAN
Sbjct: 61 KIMTLLLTMEEVDKGNISLDSMVTVSQLAESMGGSQIYLAADTRLKLRDLLKAVTIASAN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWR 176
D VA+AE++ TE+ FV+ MN ++ LG+ THF N G+ HYTTARD+AI++
Sbjct: 121 DACVAVAEAVAGTEENFVRWMNKRARELGMKNTHFSNTTGLPTDGEHYTTARDVAIMARE 180
Query: 177 IKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ + I + NTN + + G DG+KTG T A+G+ + A+A
Sbjct: 181 LIKHPQVLKWASIWVDYIDLPNGRKAMLTNTNRLINDYPGMDGLKTGHTDAAGYCLAATA 240
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNE 288
+ LI+VI+ R + +A LL GF + + K + ++
Sbjct: 241 RRNGMRLISVIMKGETEREREEATARLLDYGFNSFEKYIVLKKGHKVHNIEVPNGTRTST 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
V + ++ K+ K + E +K +L
Sbjct: 301 VAETANDLKVVVKKGEKDLLTKKVVIN-EPVEAPVKKGDVLGKI 343
>gi|160892702|ref|ZP_02073492.1| hypothetical protein CLOL250_00232 [Clostridium sp. L2-50]
gi|156865743|gb|EDO59174.1| hypothetical protein CLOL250_00232 [Clostridium sp. L2-50]
Length = 464
Score = 199 bits (505), Expect = 5e-49, Method: Composition-based stats.
Identities = 92/318 (28%), Positives = 155/318 (48%), Gaps = 11/318 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ P+ L++ TG V+ E D PAS+TK+MT +VF +K ++ +T+S+
Sbjct: 107 QLESPFCILMEATTGTVLYEKNADEARKPASVTKVMTLLLVFEAMKAGDYQMSDIVTVSE 166
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A+ S F+ G T+++ +K +I+ S ND AVA+AE +E+ FVQ MN+ +K
Sbjct: 167 HAASMGGSQCFFETGEQQTVEDMIKCIIIASGNDAAVAMAEFTAGSEEAFVQRMNDRAKE 226
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199
LG+ THF+NA G+ GH T+ARD+AI+S ++ + P+ + Y I I K
Sbjct: 227 LGMEHTHFVNACGLDADGHETSARDIAIMSRQLIDEHPEILKYSGIWMDSIIHKTARGES 286
Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
NTN + + GA G+KTG+T + + + A+A + +LIAVI+GA ++ RNK
Sbjct: 287 RFDLANTNKFLNIYTGATGLKTGYTATAKYCMSATANRNGITLIAVIMGAETKDIRNKEV 346
Query: 257 ASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
L G+ N D ++ + + + + K
Sbjct: 347 CKLFDYGYANCNLYKDENVLDTRSVSIENGISDELAIESASDFSSVLLRGEKADDVKKTP 406
Query: 314 KDKESHFIDFEKITLLKN 331
+E+ K ++
Sbjct: 407 IQEETLTAPINKGDVIGK 424
>gi|148653555|ref|YP_001280648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter sp. PRwf-1]
gi|148572639|gb|ABQ94698.1| Serine-type D-Ala-D-Ala carboxypeptidase [Psychrobacter sp. PRwf-1]
Length = 413
Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats.
Identities = 88/326 (26%), Positives = 151/326 (46%), Gaps = 9/326 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
Y L+D +TG ++AE D P PASLTK+MT++++ L + T P
Sbjct: 54 PVPPPEMDNTAYILMDYDTGVILAEKNADQPLPPASLTKMMTSHIIEKKLMSGEMKETDP 113
Query: 80 ITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ ++++A S + + L+ +I++S ND + A+AE + +E F Q
Sbjct: 114 VLMTESAWCRGTSDQSCMYVPVNKSAPAIDMLRGIIIQSGNDASKAMAEHIAGSESAFAQ 173
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN +K LG++ THF+NA G+ GH +ARD+AILS I Y + K
Sbjct: 174 IMNAEAKALGMTNTHFVNATGMPDEGHRASARDLAILSRAIIKQGGDYYKLYSEKEFTYN 233
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
N N + T DG+KTG T A+G+ + AS+ + D LI+VI+G+ R S
Sbjct: 234 NITQGNRNALLRTDPTVDGLKTGHTDAAGYCLAASSKRNDMRLISVIMGSKSMQARADQS 293
Query: 257 ASLLSMGFYNKTDRKK------INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
LL+ GF + + ++ + F +Q+ + +V + + +T +
Sbjct: 294 RELLNWGFGHFDTKVVAPANQFVDSVPVYFGKQDSVKAATGEALKVLIAKTQTDKISTVV 353
Query: 311 KEAKDKESHFIDFEKITLLKNKITKK 336
+ E+ ++I + + K
Sbjct: 354 NISDKVEAPIKKGQEIGRMMAVVDGK 379
>gi|262372977|ref|ZP_06066256.1| penicillin-binding protein 6 [Acinetobacter junii SH205]
gi|262313002|gb|EEY94087.1| penicillin-binding protein 6 [Acinetobacter junii SH205]
Length = 382
Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats.
Identities = 85/330 (25%), Positives = 142/330 (43%), Gaps = 12/330 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
S LS Y L+D TG ++A + PAS+TK+MT+Y++ L +
Sbjct: 16 FSYAATVLSAPPELNNKSYVLMDYETGQILAAKNENEKLAPASMTKMMTSYIIEQKLLKG 75
Query: 73 KAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ + ++++A S T T+ L+ +I++S ND + A+AE +
Sbjct: 76 ELTENEQVRMNESAWCRGSSTESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAG 135
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
E F MN +K +G+ THF+N+ G+ GHY+TA+DMA+L+ I D +Y +
Sbjct: 136 NEGTFAHMMNQEAKRVGMVNTHFINSTGMPADGHYSTAKDMAVLAQHIIKDSSKYYPIYS 195
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K G K N N + T DG+KTG T +G+ + S+ +G LI+VI G
Sbjct: 196 EKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTEEAGYCLTTSSKRGPMRLISVIFGTPSM 255
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE--EVCTTQKEI 303
N R + +LL+ GF N + ++E V + +
Sbjct: 256 NERASQTRTLLAWGFANFETANVQPANQVLAKAKVWFGKEDEVQIGLAENFNVTMPKGQA 315
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLKNKI 333
TQ+ + K ++ +
Sbjct: 316 DKIKTQIVV---QPKLNAPLAKGQVVGKLV 342
>gi|145633414|ref|ZP_01789144.1| hypothetical protein CGSHi3655_04260 [Haemophilus influenzae 3655]
gi|145635213|ref|ZP_01790917.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
PittAA]
gi|144985977|gb|EDJ92579.1| hypothetical protein CGSHi3655_04260 [Haemophilus influenzae 3655]
gi|145267492|gb|EDK07492.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
PittAA]
Length = 393
Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats.
Identities = 90/341 (26%), Positives = 147/341 (43%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + + ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSSFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKIMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K PN N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGAFM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGKVVYQ 354
>gi|289578077|ref|YP_003476704.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
italicus Ab9]
gi|297544350|ref|YP_003676652.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|289527790|gb|ADD02142.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
italicus Ab9]
gi|296842125|gb|ADH60641.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 417
Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats.
Identities = 85/356 (23%), Positives = 158/356 (44%), Gaps = 26/356 (7%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ ++ I + ++ ++ + P L+D TG V+ + PAS
Sbjct: 1 MKKMVASLLILFILVVQITPVYANVPSPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK++TA + L +T S N ++ ++ G +TL+ L ++++S
Sbjct: 61 TTKILTAIIAIEK-----GNLNDIVTASDNVTKIDGNSIFLSPGEQLTLEQLLYAIMLES 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+AIAE + + + F + MN +K +G +HF+N +G+ HY+T DMA+++
Sbjct: 116 ANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAYNSHFVNPNGLPDENHYSTPYDMALIAR 175
Query: 176 RIKTDFP--------QYMHYFQIKGLEIKGKKYPNT--NWAVGTFLGADGMKTGFTCASG 225
+ Y K +++ N + + GADG+KTG+T A+G
Sbjct: 176 YAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFRYEGADGVKTGYTVAAG 235
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ--Q 283
+ ASA + + LI+VI+G N + LL GF N + KK Y
Sbjct: 236 QVLAASATREGRRLISVIMGDQGTNI-WTDTIKLLDYGFQNFSLVKKTEKGEVVTYIDLG 294
Query: 284 NLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++P I++E + + + TQ+ K+ ++ + + +K + K
Sbjct: 295 KSHFKLPLIAKEDFYYEVPKGQENSIETQIILNKNIKAPINKGDILGYIKYTLNGK 350
>gi|253576351|ref|ZP_04853681.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844244|gb|EES72262.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 396
Score = 199 bits (504), Expect = 6e-49, Method: Composition-based stats.
Identities = 87/357 (24%), Positives = 148/357 (41%), Gaps = 23/357 (6%)
Query: 1 MRQ--FLVIIAMAMLSNIFPFLSIAE-------------TNKLPYYTLLDTNTGHVIAEN 45
M++ A + +++P + A L+D +TG VI E
Sbjct: 1 MKRRMLTWFAAFVLAVSVWPTYTSANHGGPHDGDDEIALAENALSAVLIDADTGTVIYEK 60
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
PAS+TK+MT + + LT +T S+ A+ S + G TMT+D
Sbjct: 61 KSHEKLPPASITKIMTMLLTMEAIDNGTLKLTDKVTTSEYAASMGGSQIFLEPGETMTVD 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
LK + + S ND +VA+AE + +EK FV+ MN ++ LGL THF N +G+ HY+
Sbjct: 121 ELLKGVAMASGNDASVALAEKIAGSEKAFVKMMNERAQQLGLKDTHFANCNGLPVADHYS 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGL----EIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+A D+AI+S + + + K NTN V + GADG+KTG+T
Sbjct: 181 SAYDIAIMSRELLKHEEITKYTGAYQDYLRQGTEKPFWLVNTNKLVRFYSGADGLKTGYT 240
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+ F + A+A + LIAV+LG + TRN +++ F
Sbjct: 241 SEAKFCLAATAKRDGLRLIAVVLGEPNTKTRNSEVSAMFDYAFSQYALLPIYQAGETIGK 300
Query: 282 QQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + ++ + K+ + ++ + E + + +
Sbjct: 301 VKVQKGMSAQLELTAAKPLNVLVKKGVKQDSITHKLIAPEKLAAPIKAGQTIGKLVV 357
>gi|145630679|ref|ZP_01786458.1| hypothetical protein CGSHi22421_02014 [Haemophilus influenzae
R3021]
gi|144983805|gb|EDJ91255.1| hypothetical protein CGSHi22421_02014 [Haemophilus influenzae
R3021]
Length = 393
Score = 199 bits (504), Expect = 6e-49, Method: Composition-based stats.
Identities = 91/341 (26%), Positives = 147/341 (43%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + A ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K PN N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGALM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGKVVYQ 354
>gi|152978379|ref|YP_001344008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus
succinogenes 130Z]
gi|150840102|gb|ABR74073.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus
succinogenes 130Z]
Length = 395
Score = 199 bits (504), Expect = 6e-49, Method: Composition-based stats.
Identities = 87/322 (27%), Positives = 137/322 (42%), Gaps = 9/322 (2%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
Y L+D N+G V+A PD PASLTK+MT+Y V +K+ K +T
Sbjct: 34 TPPQLNAQTYILMDYNSGAVLAAFNPDQRQYPASLTKMMTSYAVGDAMKQGKIHPNDQVT 93
Query: 82 I---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I S + S +++ + + +IV S ND VA+AE + + ++FV M
Sbjct: 94 IGESSWGKNFPGSSKMFLNLNQQVSVADLNRGVIVVSGNDACVALAEHVSGSTEQFVALM 153
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + GL T+F HG+ Y++ARDMA++ RI D P+ + K
Sbjct: 154 NKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMALIGIRIIHDLPEEYKIYAEKDFTFNKI 213
Query: 199 KYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTRNKVS 256
K PN N + DGMKTG T +G+N+VASA + LI+V++G R S
Sbjct: 214 KQPNRNGLLWDKSMNVDGMKTGHTSQAGYNLVASATNANNMRLISVVMGVPTYKGREVES 273
Query: 257 ASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
LL GF + K + + Y + + ++ T + + + +
Sbjct: 274 KKLLQWGFNSFDTFKTLEAGKAVGEQPVYYGEDGDVAVGVLQDGFITVPKGRQADLKARM 333
Query: 313 AKDKESHFIDFEKITLLKNKIT 334
+ K + I
Sbjct: 334 EFTTKYLEAPLAKGQTVGKVIY 355
>gi|320175126|gb|EFW50238.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC
74-1112]
gi|320185393|gb|EFW60163.1| D-alanyl-D-alanine carboxypeptidase [Shigella flexneri CDC 796-83]
gi|332097731|gb|EGJ02705.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 3594-74]
Length = 403
Score = 199 bits (504), Expect = 6e-49, Method: Composition-based stats.
Identities = 84/352 (23%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +++ T + + + +K ++
Sbjct: 310 WFGDSDRASLGVDKDMYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 361
>gi|309786587|ref|ZP_07681209.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
1617]
gi|308925554|gb|EFP71039.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella dysenteriae
1617]
Length = 364
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 94/317 (29%), Positives = 146/317 (46%), Gaps = 11/317 (3%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A
Sbjct: 2 DARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA 61
Query: 87 SEYPPS------NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
K G +++ + K +I++S ND +A+A+ + +++ F+ MN
Sbjct: 62 WVTGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNG 121
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+K LGL+ T F HG+ G ++TARDMA+L + D P+ + K +
Sbjct: 122 YAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQ 181
Query: 201 PNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
PN N + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L
Sbjct: 182 PNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 241
Query: 260 LSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
L+ GF I + + + + S + T N +
Sbjct: 242 LAWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGKAGSVTIPRGQLKNLKASYTLT 301
Query: 316 KESHFIDFEKITLLKNK 332
+ +K ++
Sbjct: 302 EPQLTAPLKKGQVVGTI 318
>gi|167755687|ref|ZP_02427814.1| hypothetical protein CLORAM_01202 [Clostridium ramosum DSM 1402]
gi|167704626|gb|EDS19205.1| hypothetical protein CLORAM_01202 [Clostridium ramosum DSM 1402]
Length = 379
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 85/342 (24%), Positives = 160/342 (46%), Gaps = 10/342 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ L+ + + L I ++ L++ N+ ++ + + PAS TK
Sbjct: 1 MKKLLITLLVVCLLPISRVQALDNDVTPNAKSAILIEANSRQILYDKNAEEKLYPASTTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT ++F L+ KK IT SK A+ S + G +++L + K + + SAND
Sbjct: 61 IMTMILMFEALRNKKISFDDEITTSKYAASMGGSQVYLEVGESLSLKDMFKSIAIASAND 120
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA+AE + + KFV+ MN+ +K LGL THF NA G+ HYT A D+AI++ +
Sbjct: 121 ASVAVAEHIAGSINKFVEMMNDKAKKLGLKNTHFKNATGLHDPDHYTCAHDLAIMAAYLI 180
Query: 179 TDFPQY------MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ ++ I+ + NTN + + G DG+KTG+T +G+ +V +A
Sbjct: 181 EIGGEDLFAVTSLYDSYIREDTKQSFWLVNTNKLLKLYNGVDGLKTGYTKEAGYCLVTTA 240
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--IIKDFYQQNLSNEVP 290
+ Q +I V++ TRN+ SLL GF N +I+ + N
Sbjct: 241 QRDGQRIIGVLMKETAPKTRNEEMCSLLDYGFNNYKQVTIFKKDTLIEQHLVDKMDNLTI 300
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + + + + ++ + + +F+ ++ ++
Sbjct: 301 DVKCKKDIVYTKAKSADAKVSTKVNYKENFLPVKQGDVIGTL 342
>gi|301168630|emb|CBW28220.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Haemophilus influenzae 10810]
Length = 393
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 90/341 (26%), Positives = 147/341 (43%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + + ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVTLSSFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K PN N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGAFM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGKVVYQ 354
>gi|319896451|ref|YP_004134644.1| d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5)
[Haemophilus influenzae F3031]
gi|317431953|emb|CBY80301.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Haemophilus influenzae F3031]
Length = 393
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 91/341 (26%), Positives = 147/341 (43%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + A ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K PN N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSRAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGALM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGKVVYQ 354
>gi|326791361|ref|YP_004309182.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
DSM 5427]
gi|326542125|gb|ADZ83984.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
DSM 5427]
Length = 396
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 154/349 (44%), Gaps = 17/349 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
FL++I M Y L++ ++G ++ E D P PAS+T
Sbjct: 9 IFLLLIIMCCSQVFAAATPKKNTNQTLAATARSYILMEESSGKILLERNADEPLPPASIT 68
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT ++ + K +TIS++A+ S + G T+ + +K + + SAN
Sbjct: 69 KVMTLLLINEAVDTGKINWEDKVTISEHAAHMGGSQVFMEPGEEQTVRDLVKCICIASAN 128
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D AVA++E + +E++FV+ MN + LG++ T F NA G+ GH +TARD+A++S +
Sbjct: 129 DAAVAMSEYIAGSEEQFVELMNKRAAELGMTHTVFKNACGLHTEGHVSTARDIALMSRAL 188
Query: 178 KTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
P+ I + NTN + + G G+KTG+T + +
Sbjct: 189 VNGHPEITKTLTTWMDTITHRTRRGESEFGLSNTNKMLKWYKGITGLKTGYTPEAKHCVS 248
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR--KKINYIIKDFYQQNLSN 287
A+A + + LIAVI+GA D TR + + LL GF N + I II + +
Sbjct: 249 ATATRDNMGLIAVIMGAADGKTRFQEAGQLLDYGFANYKVKVGPTIGTIIGEAPIKKGDV 308
Query: 288 EVPNISEEVCT--TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
N++ + + + EA +E K ++
Sbjct: 309 SKINVATKETKAFVVPKSNTNSELTYEAHYREPLIAPISKGAIVGEMTY 357
>gi|58584548|ref|YP_198121.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont strain
TRS of Brugia malayi]
gi|58418864|gb|AAW70879.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont strain
TRS of Brugia malayi]
Length = 370
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 84/334 (25%), Positives = 153/334 (45%), Gaps = 5/334 (1%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++I + + + F S K +LD + I E+ D +P+S++KLMT YV
Sbjct: 7 LVILLLVSTLPFSSYSYQFRTKAKQAVVLDLASDLFIFEHNSDEKMSPSSMSKLMTLYVA 66
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F +LK + +S+ A E S+ K+G ++++ L+ + S ND + +AE
Sbjct: 67 FDYLKAGIIDMKDKFRVSRKAWERKGSSMFLKEGQSVSVKELLEGVTTVSGNDACITLAE 126
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+ +E+ FV MN ++NL LS ++F+N+ G H+ +A+D+ +L+ RI TDFP+Y
Sbjct: 127 GIAGSEENFVVEMNEVAQNLNLSDSYFVNSSGWPDKDHFMSAKDLVVLAKRIFTDFPEYY 186
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
F + L N N + +G DG+KTG+T A G+ IV SA + D+ + AV+ G
Sbjct: 187 DLFSKQYLTYNDIIQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVISAKRNDRRIFAVVNG 246
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY----QQNLSNEVPNISEEVCTTQK 301
R + + L+ F + +K ++ +V T
Sbjct: 247 LNTEKERIEEAKRLIQYSFNHFNTKKIFAKDSVVEEINVLYGKERKVSATVANDVTITYN 306
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ +++ + K+ +K + +
Sbjct: 307 RNLRDKIKVRV-EYKDMIPAPIKKGQEVGKIFIE 339
>gi|320015830|gb|ADV99401.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 401
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 148/323 (45%), Gaps = 11/323 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +
Sbjct: 33 PAAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLV 92
Query: 81 TISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
T+ K+A K G + + + K ++++S ND ++A+A+ + ++ F
Sbjct: 93 TVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSF 152
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K
Sbjct: 153 VGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFT 212
Query: 195 IKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ N N + DGMKTG+T G+N+VASA G LI+V+LGA R
Sbjct: 213 FNKIRQTNRNRLLWNSSLNVDGMKTGYTNGVGYNLVASATDGPMRLISVVLGAPSDKVRF 272
Query: 254 KVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
S LL+ GF I + + + S ++E+ T + N +
Sbjct: 273 SESEKLLTWGFRFYETVVPIKSTKPFVTEKVWLGDNSQVELGVAEDAAITIPKGQMKNLK 332
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
++ K ++
Sbjct: 333 ASYTLNQTELRAPLAKHQVVGTI 355
>gi|297544605|ref|YP_003676907.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842380|gb|ADH60896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 382
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 140/349 (40%), Gaps = 23/349 (6%)
Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++F L I+ M S S + ++D TG V+ E AS T
Sbjct: 1 MKKFVFYLFILLYFMSSVKVYANSDYPSIFAKSAIVIDQETGRVLYEKNSHEKLPMASTT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT V L +T+SK A+ S+ G + +++ L L++ S N
Sbjct: 61 KIMTLLVALEK-----GNLKDIVTVSKRAASVGGSSIWLSPGEKIDMESLLYGLMLNSGN 115
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSW 175
D A AIAE + + + F + MN +K +G THF G+ HYTTA D+A+++
Sbjct: 116 DAATAIAEHIGGSVENFAKIMNEKAKEIGAYDTHFATPSGLDIGIDDHYTTAYDLALITR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+P++ K I + N N + + GADG+KTGFT +G +V
Sbjct: 176 Y-AFRYPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLV 234
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLS 286
+SA + + IAV+L + + S +L F + + I K +
Sbjct: 235 SSATREGRRFIAVVLNSP---PMWEDSIKILDYAFSKYKPYRVLKREELIKKIEVKGGKE 291
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
N + +SE C E ES EK + K
Sbjct: 292 NSISVVSETECIIPASEEEKQKVSLEFHLPESVEAPIEKGERIGYVTVK 340
>gi|186894765|ref|YP_001871877.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
pseudotuberculosis PB1/+]
gi|186697791|gb|ACC88420.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
pseudotuberculosis PB1/+]
Length = 401
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 149/323 (46%), Gaps = 11/323 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +
Sbjct: 33 PAAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLV 92
Query: 81 TISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
T+ K+A K G + + + K ++++S ND ++A+A+ + ++ F
Sbjct: 93 TVGKDAWATGNPALRGSSLMFLKPGDQVKVSDLNKGIVIQSGNDASIALADYVAGSQDSF 152
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K
Sbjct: 153 VGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFT 212
Query: 195 IKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ N N + DGMKTG+T +G+N+VASA G LI+V+LGA R
Sbjct: 213 FNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRF 272
Query: 254 KVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
S LL+ GF I + + + S ++E+ T + N +
Sbjct: 273 SESEKLLTWGFRFYETVVPIKSTKPFVTEKVWLGDNSQVELGVAEDAAITIPKGQMKNLK 332
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
++ K ++
Sbjct: 333 ASYTLNQTELRAPLAKHQVVGTI 355
>gi|153947077|ref|YP_001401624.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
31758]
gi|152958572|gb|ABS46033.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
31758]
Length = 400
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 149/323 (46%), Gaps = 11/323 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +
Sbjct: 32 PAAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLV 91
Query: 81 TISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
T+ K+A K G + + + K ++++S ND ++A+A+ + ++ F
Sbjct: 92 TVGKDAWATGNPALRGSSLMFLKPGDQVKVSDLNKGIVIQSGNDASIALADYVAGSQDSF 151
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K
Sbjct: 152 VGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFT 211
Query: 195 IKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ N N + DGMKTG+T +G+N+VASA G LI+V+LGA R
Sbjct: 212 FNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRF 271
Query: 254 KVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
S LL+ GF I + + + S ++E+ T + N +
Sbjct: 272 SESEKLLTWGFRFYETVVPIKSTKPFVTEKVWLGDNSQVELGVAEDAAITIPKGQMKNLK 331
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
++ K ++
Sbjct: 332 ASYTLNQTELRAPLAKHQVVGTI 354
>gi|51595692|ref|YP_069883.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
32953]
gi|108812820|ref|YP_648587.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516]
gi|145599648|ref|YP_001163724.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides F]
gi|162419917|ref|YP_001606057.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola]
gi|165936271|ref|ZP_02224840.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. IP275]
gi|167468020|ref|ZP_02332724.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis FV-1]
gi|170024965|ref|YP_001721470.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia
pseudotuberculosis YPIII]
gi|229841277|ref|ZP_04461436.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229843380|ref|ZP_04463526.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229895754|ref|ZP_04510924.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides A]
gi|229903242|ref|ZP_04518355.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516]
gi|51588974|emb|CAH20591.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
32953]
gi|108776468|gb|ABG18987.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Yersinia pestis Nepal516]
gi|145211344|gb|ABP40751.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides F]
gi|162352732|gb|ABX86680.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola]
gi|165915885|gb|EDR34493.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. IP275]
gi|169751499|gb|ACA69017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia
pseudotuberculosis YPIII]
gi|229679012|gb|EEO75115.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Nepal516]
gi|229689727|gb|EEO81788.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229697643|gb|EEO87690.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700677|gb|EEO88706.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Pestoides A]
Length = 401
Score = 199 bits (504), Expect = 7e-49, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 149/323 (46%), Gaps = 11/323 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +
Sbjct: 33 PAAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLV 92
Query: 81 TISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
T+ K+A K G + + + K ++++S ND ++A+A+ + ++ F
Sbjct: 93 TVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSF 152
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K
Sbjct: 153 VGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFT 212
Query: 195 IKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ N N + DGMKTG+T +G+N+VASA G LI+V+LGA R
Sbjct: 213 FNKIRQTNRNRLLWNSSLNVDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRF 272
Query: 254 KVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
S LL+ GF I + + + S ++E+ T + N +
Sbjct: 273 SESEKLLTWGFRFYETVVPIKSTKPFVTEKVWLGDNSQVELGVAEDAAITIPKGQMKNLK 332
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
++ K ++
Sbjct: 333 ASYTLNQTELRAPLAKHQVVGTI 355
>gi|316934064|ref|YP_004109046.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris DX-1]
gi|315601778|gb|ADU44313.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris DX-1]
Length = 413
Score = 199 bits (504), Expect = 8e-49, Method: Composition-based stats.
Identities = 87/350 (24%), Positives = 137/350 (39%), Gaps = 20/350 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI------------AETNKLPYYTLLDTNTGHVIAENYPD 48
M + L+ +A+ P + + P LLD +G V+ E D
Sbjct: 14 MMRGLLAGLIAVALGAGPATAANQSVQGAKKEEGGFEAQAPTAILLDAESGSVLFEKNAD 73
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMT 103
P+S+ KLMT VVF LK L +S+N+ Y S + S+++
Sbjct: 74 ELRAPSSMMKLMTVEVVFHLLKTGALQLAQEYRVSENSWRYGGAPAGGSTMFAEIHSSIS 133
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+DN L+ I++S ND + +AE + +E FV+ M ++ LGL+ + F N+ G+ +
Sbjct: 134 VDNLLRGAIIQSGNDSCMVLAEGIAGSEAAFVERMTKRARELGLTQSTFGNSTGLPNPDN 193
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ R++A L+ I +P F K + N N + GADG KTGFT
Sbjct: 194 KMSVRELARLARHIILTYPDMYALFGEKEFTWNKIRQTNRNPLLNALPGADGFKTGFTKE 253
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ- 282
G+ +V SA+Q LI V+ G + R + LL GF N R Y
Sbjct: 254 GGYGLVGSAVQNGMRLIVVVNGLESADDRASEAKKLLEWGFRNFESRSLFASDATVGYAR 313
Query: 283 --QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
VP E + + + E +
Sbjct: 314 VFGGDKRYVPLTPAEPVRVMVRRNGSDKLLARIVYQGPVPAPVEGGQRIG 363
>gi|315633663|ref|ZP_07888953.1| D-alanyl-D-alanine carboxypeptidase DacA [Aggregatibacter segnis
ATCC 33393]
gi|315477705|gb|EFU68447.1| D-alanyl-D-alanine carboxypeptidase DacA [Aggregatibacter segnis
ATCC 33393]
Length = 399
Score = 199 bits (504), Expect = 8e-49, Method: Composition-based stats.
Identities = 94/347 (27%), Positives = 147/347 (42%), Gaps = 13/347 (3%)
Query: 2 RQFLVIIAMAMLSNIFP----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+ L+ A+ + F Y L+D N+G V+ PD PASLT
Sbjct: 14 KIALIAGALCASFSAVADDIQFNIAVPEINAQTYILMDYNSGTVLVALNPDQRQYPASLT 73
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVK 114
K+MT+YV LK+ K T +TI ++A S +++ + + +++
Sbjct: 74 KMMTSYVTGQALKQGKIHDTDVVTIGESAWGQNFPGSSKMFLNLNQQVSVADLNRGIVIV 133
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND VA+AE + T FV MN + GL THF HG+ Y++ARDMAI+
Sbjct: 134 SGNDACVAMAEHVSGTVTNFVATMNKYVEQFGLKNTHFTTVHGLDDENQYSSARDMAIIG 193
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAI 233
I D P+ + K K PN N + DGMKTG T +G+N+VASA
Sbjct: 194 AHIIRDLPEEYKIYAEKDFTFNKIKQPNRNGLLWDKTIHVDGMKTGHTDKAGYNLVASAT 253
Query: 234 Q-GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNE 288
+ LI+V++G R S LL GF N K + Y + SN
Sbjct: 254 NPNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTFEAGKAISEQRVYYGDESNI 313
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ ++ T + + + + +K+ K ++ + +
Sbjct: 314 QLGVLQDAFITIPKGKSSELKARYELEKKYLEAPLAKGQVVGKVVYQ 360
>gi|121608233|ref|YP_996040.1| Serine-type D-Ala-D-Ala carboxypeptidase [Verminephrobacter
eiseniae EF01-2]
gi|121552873|gb|ABM57022.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Verminephrobacter eiseniae EF01-2]
Length = 402
Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats.
Identities = 97/352 (27%), Positives = 157/352 (44%), Gaps = 21/352 (5%)
Query: 1 MRQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L ++ + Y LLD V+A D P
Sbjct: 14 MKRILSVLRPLAILAALAPAAFGAHAQAPQPPEIAARAYILLDVTANQVLAAKNIDAPVE 73
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
ASLTKLMTAY+VF L+ +K L + +S+ A + P S + +++ LK +I
Sbjct: 74 QASLTKLMTAYLVFDALRAEKISLQQNLPVSERAWKMPGSRMFIDPTMQVPVEDLLKGMI 133
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND A+A+AE + T + FV+ MN +K LG+ +T + N G+ + GH +TARD+ +
Sbjct: 134 VQSGNDAAMALAEGVGATAENFVKLMNEQAKALGMQSTSYKNPEGLTEPGHLSTARDLGL 193
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIV 229
L+ R+ DFPQ+MHY+ K G N N DG+KTG T A+G+ +V
Sbjct: 194 LATRLMKDFPQHMHYYATKQYSYPGTPASNANNRNTLLYRDPTVDGLKTGHTAAAGYCLV 253
Query: 230 ASAIQ-----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDF 280
A+A + G + L++++LGA + R S LL+ G+ K +
Sbjct: 254 ATAKREFPGLGQRRLLSIMLGAASESARANESQKLLNWGYTAFEAVKLFDAGQPVATPAV 313
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ S E + T + A+ + + K +
Sbjct: 314 WKGRTSQLKIGHEEAIVMTVPAGSTGRITTRIAR-PDPLVAPYTKGQSIGTL 364
>gi|237734435|ref|ZP_04564916.1| D-alanyl-D-alanine carboxypeptidase [Mollicutes bacterium D7]
gi|229382665|gb|EEO32756.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. D7]
Length = 390
Score = 198 bits (503), Expect = 8e-49, Method: Composition-based stats.
Identities = 85/342 (24%), Positives = 160/342 (46%), Gaps = 10/342 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ L+ + + L I ++ L++ N+ ++ + + PAS TK
Sbjct: 12 MKKLLITLLVVCLLPISRVQALDNDVTPNAKSAILIEANSRQILYDKNAEEKLYPASTTK 71
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT ++F L+ KK IT SK A+ S + G +++L + K + + SAND
Sbjct: 72 IMTMILMFEALRNKKISFDDEITTSKYAASMGGSQVYLEVGESLSLKDMFKSIAIASAND 131
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+VA+AE + + KFV+ MN+ +K LGL THF NA G+ HYT A D+AI++ +
Sbjct: 132 ASVAVAEHIAGSINKFVEMMNDKAKKLGLKNTHFKNATGLHDPDHYTCAHDLAIMAAYLI 191
Query: 179 TDFPQY------MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ ++ I+ + NTN + + G DG+KTG+T +G+ +V +A
Sbjct: 192 EIGGEDLFAVTSLYDSYIREDTKQSFWLVNTNKLLKLYNGVDGLKTGYTKEAGYCLVTTA 251
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--IIKDFYQQNLSNEVP 290
+ Q +I V++ TRN+ SLL GF N +I+ + N
Sbjct: 252 QRDGQRIIGVLMKETAPKTRNEEMCSLLDYGFNNYKQVTIFKKDTLIEQHLVDKMDNLTI 311
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + + + + ++ + + +F+ ++ ++
Sbjct: 312 DVKCKKDIVYTKAKSADAKVSTKVNYKENFLPVKQGDVIGTL 353
>gi|16272004|ref|NP_438202.1| penicillin-binding protein 5 [Haemophilus influenzae Rd KW20]
gi|260580667|ref|ZP_05848494.1| D-alanyl-D-alanine carboxypeptidase dacA [Haemophilus influenzae
RdAW]
gi|1169208|sp|P44466|DACA_HAEIN RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
Full=Penicillin-binding protein 5; Short=PBP-5; Flags:
Precursor
gi|1572974|gb|AAC21707.1| penicillin-binding protein 5 (dacA) [Haemophilus influenzae Rd
KW20]
gi|260092729|gb|EEW76665.1| D-alanyl-D-alanine carboxypeptidase dacA [Haemophilus influenzae
RdAW]
Length = 393
Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats.
Identities = 90/341 (26%), Positives = 146/341 (42%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + A ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K N N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKNFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGALM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLVKGQVIGKVVYQ 354
>gi|304397386|ref|ZP_07379264.1| Beta-lactamase [Pantoea sp. aB]
gi|304355004|gb|EFM19373.1| Beta-lactamase [Pantoea sp. aB]
Length = 387
Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats.
Identities = 96/350 (27%), Positives = 148/350 (42%), Gaps = 18/350 (5%)
Query: 1 MRQFLVIIAMAMLSNIF-------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M++ L+ A L PF + L+D TG V+ PD NP
Sbjct: 1 MKRRLLFTVTATLFWASLAQADAIPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNA 107
ASLTKLMT YVV + +KK +T+ K+A K G +++ +
Sbjct: 61 ASLTKLMTGYVVDRAIDQKKISRDDMVTVGKDAWGAGNPVFKGSSLMFLKPGDKLSVRDL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+ +I+ S ND VA+A+ + +E FV MN+ + LGL THF HG+ G +++A
Sbjct: 121 SRGVIIDSGNDACVALADYVAGSEANFVGMMNHYVEKLGLQNTHFETVHGLDAPGQFSSA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGF 226
DMA LS I P + + K L G N N L DG+KTG T +GF
Sbjct: 181 LDMAKLSRAIIDGEPDFYAMYSEKTLTWNGITQNNRNGLLWDNNLHVDGLKTGHTETAGF 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQ 282
NI+AS + G LIAV++G R + + LL G + + K + +
Sbjct: 241 NIIASNVVGKHRLIAVVMGGKSSKGREEQARKLLVWGQNTFDTVQLFHAGKKIGTENVWY 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
N +E+V + N + K +++ + ++
Sbjct: 301 GNPHQVDVGTAEDVYLSLPRSEVQNVKAKYVINRKDLEAPLKANEVVGEI 350
>gi|53718048|ref|YP_107034.1| penicillin-binding protein 6 [Burkholderia pseudomallei K96243]
gi|52208462|emb|CAH34396.1| penicillin-binding protein 6 [Burkholderia pseudomallei K96243]
Length = 403
Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats.
Identities = 84/331 (25%), Positives = 148/331 (44%), Gaps = 15/331 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 33 TYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKKI 92
Query: 75 MLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T S+ S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 93 TMEQIVTPSEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEA 152
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN ++ LG+ THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 153 QFVNMMNAEAQRLGMKNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKE 212
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILG 245
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++G
Sbjct: 213 FTYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMG 272
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTT 299
+ R + S +L+ G+ + Y+ +N + ++ +
Sbjct: 273 ETKESDRVQDSMKMLNYGYTAFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVP 332
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 333 RGLADKVKPEVALNAPLIAPLADGQVVGSVK 363
>gi|213583748|ref|ZP_03365574.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
Length = 401
Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats.
Identities = 84/347 (24%), Positives = 141/347 (40%), Gaps = 18/347 (5%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ +S + Y L+D N+G V+AE D +PASL
Sbjct: 13 LTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 72
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKL 110
TK+MT+YV+ +K K T +T+ +A K G + + ++
Sbjct: 73 TKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRG 132
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDM
Sbjct: 133 INLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDM 192
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIV 229
A++ + D P ++ K G + N N + DG+KTG T +G+N+V
Sbjct: 193 ALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLV 252
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNL 285
ASA +G LI+ ++G R S LL+ GF + + + N
Sbjct: 253 ASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNT 312
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++V T + + + +K ++
Sbjct: 313 DRASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGTI 359
>gi|114570005|ref|YP_756685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10]
gi|114340467|gb|ABI65747.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10]
Length = 381
Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats.
Identities = 71/345 (20%), Positives = 139/345 (40%), Gaps = 10/345 (2%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
MR + + + ++ + + +LD TG V+ D PAS++K+
Sbjct: 1 MRVYPAIALLLSFVICTPGLAQTTYQTDASHAVILDAETGEVLFSRNADEAMPPASMSKM 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVK 114
MT ++ ++ L + +S+ A S + S +D+ L+ +I++
Sbjct: 61 MTVLMLIEAIEAGSLSLDDELPVSEYAWRTGGAASGSSTMFLEVNSRARVDDLLRGIIIQ 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND + +AE++ +E F M + + LGL++ F N+ G H +A D+A L+
Sbjct: 121 SGNDACIVVAEAIGGSEAAFADMMTDRAHELGLTSASFANSTGWPHPDHRISALDLARLA 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ D P Y + + G + N N +G F GADG+KTG T SG+ +V SA +
Sbjct: 181 RILIEDHPDYYDIWSEREFTYNGIRQYNRNPLLGVFSGADGLKTGHTEESGYGLVGSAER 240
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-DFYQQNLSNEVPNIS 293
+ I V G N R + ++ + + + D + E P ++
Sbjct: 241 DGERRIIVFNGMSSNNDRATEAERMMRSALSDYSLYRLFEAGDPVDHQAEVFMGEAPTVA 300
Query: 294 EEVCTTQKEIINYNTQMKEAKDKE---SHFIDFEKITLLKNKITK 335
V + ++ + + ++ ++ +
Sbjct: 301 LRVSSDVTAGLHRRARRDLSVSVSYDGPLVAPVQEGDVVGTLTVE 345
>gi|296103671|ref|YP_003613817.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058130|gb|ADF62868.1| D-alanyl-D-alanine carboxypeptidase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 388
Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats.
Identities = 84/328 (25%), Positives = 143/328 (43%), Gaps = 14/328 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
F + + L+D TG ++ NPASLTKLMT YVV + +
Sbjct: 24 PLDFSPQPPAIQAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRIS 83
Query: 76 LTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+T+ ++A K+G +++ + + LIV S ND VA+A+ +
Sbjct: 84 PDDIVTVGRDAWAKGNPVFDGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADHVAG 143
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+ +FV+ MN+ + L L THF HG+ G +++A D+A+LS I P++ H +
Sbjct: 144 GQPQFVKMMNDYVQKLNLRDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYS 203
Query: 190 IKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
K L G N N + DG+KTG T +GFN++AS + G + LIAV++GA
Sbjct: 204 EKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASTVDGQRRLIAVVMGADS 263
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEII 304
R + LL G N + ++ K + + ++ +
Sbjct: 264 PKGREDQARKLLHWGQQNFDTVQILHNGKKVGTERIWYGDKEQVNLGTDQDFWLALPKAE 323
Query: 305 NYNTQMKE---AKDKESHFIDFEKITLL 329
N + K K+ E+ +++ +
Sbjct: 324 VPNIKAKYVLDTKELEAPIAAHQRVGEI 351
>gi|145629114|ref|ZP_01784913.1| hypothetical protein CGSHi22121_09940 [Haemophilus influenzae
22.1-21]
gi|144978617|gb|EDJ88340.1| hypothetical protein CGSHi22121_09940 [Haemophilus influenzae
22.1-21]
Length = 393
Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats.
Identities = 89/341 (26%), Positives = 146/341 (42%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + + ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSSFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K N N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKNFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGALM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLVKGQVIGKVVYQ 354
>gi|28875449|gb|AAO59939.1| DacD [uncultured bacterium]
Length = 421
Score = 198 bits (503), Expect = 9e-49, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 147/349 (42%), Gaps = 18/349 (5%)
Query: 2 RQFLVIIAMAMLSN-------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ +S F + L+D TG ++ NPA
Sbjct: 36 RRLFIAASLLTMSFSPAWASDAVSFAPQPPAITAGAWVLMDYTTGQILTAGNEHQQRNPA 95
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + K+ T +T+ ++A K+G +++ +
Sbjct: 96 SLTKLMTGYVVDRAIDSKRISPTDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 155
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MNN ++ L L THF HG+ G +++A
Sbjct: 156 RGLIVDSGNDACVALADYIAGGQPQFVAMMNNYAQKLNLQDTHFETVHGLDAPGQHSSAY 215
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P + H + K L G N N + DG+KTG T +GFN
Sbjct: 216 DLAVLSRAIIHGEPDFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFN 275
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQ 283
++ASA+ G + LIAV++GA R + LL G +N + + + +
Sbjct: 276 LIASAVDGQRRLIAVVMGAESAKGREDQARKLLQWGQHNFDTVQVLRSGKQVGTERIWYG 335
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++ + N + K DK+ +
Sbjct: 336 DKEKISLGTEQDFWMALPKAEVPNIKAKYVLDKKELVAPIAAHQRVGEI 384
>gi|253990639|ref|YP_003041995.1| D-alanyl-D-alanine carboxypeptidase fraction A [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782089|emb|CAQ85253.1| penicillin-binding protein 5 precursor [Photorhabdus asymbiotica]
Length = 428
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 89/352 (25%), Positives = 151/352 (42%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPF---------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
++ + IA+AM + F + Y L+D N+G V+AE D
Sbjct: 35 IKSVTLGIALAMNVSAFANGNDVNLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADSHR 94
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K +T+ +A K G +++
Sbjct: 95 DPASLTKMMTSYVIGQAIKSGKIGPNDMVTVGTDAWATGNPVFKGSSLMFLKPGDQVSVS 154
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ + ++S ND VA+A+ + +++ FV MN K+LGL T+F HG+ G Y+
Sbjct: 155 MLSRGINLQSGNDACVAMADYVAGSQESFVNLMNGYVKSLGLQNTNFKTVHGLDAEGQYS 214
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
+ARDMA++ + D P+ ++ K + N N L DG+KTG T A+
Sbjct: 215 SARDMALIGQALIRDVPEEYAIYKEKEFTYNNIRQTNRNGLLWDKSLNVDGIKTGHTNAA 274
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +GD LI+ +LG R S LL+ GF + +
Sbjct: 275 GYNLVASATEGDMRLISAVLGGHTYKGRETESKKLLTWGFRFFETVAPLKADKEFASEPV 334
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + K ++
Sbjct: 335 WFGDSDRVQLGVDKDVYLTIPRGRLKDLKASYVMNDTELHAPLAKNQVVGTI 386
>gi|167462561|ref|ZP_02327650.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus larvae
subsp. larvae BRL-230010]
gi|322381758|ref|ZP_08055712.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321154146|gb|EFX46468.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 392
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 82/318 (25%), Positives = 135/318 (42%), Gaps = 8/318 (2%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
LLD +TG +I+E D PAS+TK+MT ++ + + + + S+ A
Sbjct: 39 NAKSAILLDADTGTIISEKDKDAKLPPASITKIMTMLLIMEAVDKGTLKMDEKVRTSEYA 98
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ S + G MT++ LK + + S ND +VA+AE + TE+ FV+ MN +K LG
Sbjct: 99 ASMGGSQIFLEPGEEMTVEEMLKGIAMASGNDASVAMAEKIAGTEEDFVRMMNERAKQLG 158
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----PQYMHYFQIKGLEIKGKKYPN 202
+ THF N +G+ HY+TA D+A++S + + ++ K N
Sbjct: 159 MKNTHFANCNGLPAENHYSTAYDIALMSRELLKHEKITAFTGAYQDYLRKDSEKPFWLVN 218
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
TN V + GADG+KTGFT F + A+A + + +IAV++G D TRN L
Sbjct: 219 TNKLVRFYNGADGLKTGFTSEEKFCLAATAKRDNLRMIAVVMGEPDTKTRNAEVTKLFDY 278
Query: 263 GFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
F T+ + + + K+ E +
Sbjct: 279 SFSQYTNYPIFKAGDQIGSFRVGKGKVQEVPLIAKHPYGVLLKKSEGKEGIRHEVQILPD 338
Query: 319 HFIDFEKITLLKNKITKK 336
+ + + K
Sbjct: 339 LKAPVQAGEPIGKLVVYK 356
>gi|51595441|ref|YP_069632.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
pseudotuberculosis IP 32953]
gi|153946853|ref|YP_001401914.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
pseudotuberculosis IP 31758]
gi|51588723|emb|CAH20334.1| putative penicillin-binding protein 5 [Yersinia pseudotuberculosis
IP 32953]
gi|152958348|gb|ABS45809.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pseudotuberculosis IP
31758]
Length = 400
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 88/330 (26%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 29 VNLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGK 88
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G + + + + ++S ND VA+A+ +
Sbjct: 89 IGADDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 148
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN K LGL THF HG+ G +++ARDMA++ + D P
Sbjct: 149 AGSQDSFVNLMNNYVKALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAI 208
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA G LI+V+LG
Sbjct: 209 YKEKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGG 268
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++ T
Sbjct: 269 HTFKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDSDRVQLGVDKDAYLTIPR 328
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + K ++
Sbjct: 329 GRMKDLKASYVLNTPEIHAPLAKNQVVGTI 358
>gi|187731390|ref|YP_001879357.1| D-alanyl-D-alanine carboxypeptidase fraction A [Shigella boydii CDC
3083-94]
gi|187428382|gb|ACD07656.1| serine-type D-Ala-D-Ala carboxypeptidase [Shigella boydii CDC
3083-94]
Length = 403
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 84/352 (23%), Positives = 144/352 (40%), Gaps = 20/352 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPSVPQIDAESYILIDYNSGKVLAEQNADVRR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQTMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDF 280
G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +++ T + + + +K ++
Sbjct: 310 WFGDSDRASLGVDKDMYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 361
>gi|16764014|ref|NP_459629.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|62179236|ref|YP_215653.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161615147|ref|YP_001589112.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167550827|ref|ZP_02344583.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|167990643|ref|ZP_02571743.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168231649|ref|ZP_02656707.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168236628|ref|ZP_02661686.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168240484|ref|ZP_02665416.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168264432|ref|ZP_02686405.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168465811|ref|ZP_02699693.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|168823261|ref|ZP_02835261.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194442745|ref|YP_002039879.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194448720|ref|YP_002044671.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194471751|ref|ZP_03077735.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194736722|ref|YP_002113755.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197250303|ref|YP_002145612.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|198245247|ref|YP_002214626.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200389790|ref|ZP_03216401.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204930599|ref|ZP_03221529.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205351925|ref|YP_002225726.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207856103|ref|YP_002242754.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|224582473|ref|YP_002636271.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|238911587|ref|ZP_04655424.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|16419149|gb|AAL19588.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|62126869|gb|AAX64572.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161364511|gb|ABX68279.1| hypothetical protein SPAB_02915 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401408|gb|ACF61630.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194407024|gb|ACF67243.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194458115|gb|EDX46954.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194712224|gb|ACF91445.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195631937|gb|EDX50457.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197214006|gb|ACH51403.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197290404|gb|EDY29760.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|197939763|gb|ACH77096.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|199602235|gb|EDZ00781.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204320533|gb|EDZ05736.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205271706|emb|CAR36537.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205324158|gb|EDZ11997.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205331044|gb|EDZ17808.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205334030|gb|EDZ20794.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205339760|gb|EDZ26524.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205340474|gb|EDZ27238.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205347141|gb|EDZ33772.1| serine-type D-Ala-D-Ala carboxypeptidase [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206707906|emb|CAR32194.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467000|gb|ACN44830.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261245910|emb|CBG23711.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267992371|gb|ACY87256.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301157238|emb|CBW16725.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312911668|dbj|BAJ35642.1| D-alanyl-D-alanine carboxypeptidase DacA [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320084907|emb|CBY94697.1| D-alanyl-D-alanine carboxypeptidase, fraction A [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321226217|gb|EFX51268.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322613231|gb|EFY10174.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322621299|gb|EFY18156.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322623719|gb|EFY20557.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322628991|gb|EFY25770.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322631713|gb|EFY28467.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322637551|gb|EFY34253.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322641891|gb|EFY38521.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322646735|gb|EFY43241.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322651436|gb|EFY47816.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653113|gb|EFY49447.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658833|gb|EFY55088.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322664897|gb|EFY61090.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322668899|gb|EFY65051.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322670595|gb|EFY66728.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322675336|gb|EFY71412.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322682193|gb|EFY78218.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322684977|gb|EFY80974.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322713701|gb|EFZ05272.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323128954|gb|ADX16384.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323193964|gb|EFZ79166.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323197944|gb|EFZ83066.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323202009|gb|EFZ87069.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323207142|gb|EFZ92095.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323210407|gb|EFZ95298.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323214331|gb|EFZ99082.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221482|gb|EGA05896.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323231084|gb|EGA15200.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323234084|gb|EGA18173.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323238221|gb|EGA22279.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323242545|gb|EGA26569.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323248478|gb|EGA32412.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323259234|gb|EGA42877.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323261642|gb|EGA45217.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264824|gb|EGA48325.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323272339|gb|EGA55746.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326622381|gb|EGE28726.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326626964|gb|EGE33307.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
gi|332987582|gb|AEF06565.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 403
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 85/347 (24%), Positives = 142/347 (40%), Gaps = 18/347 (5%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ A +S + Y L+D N+G V+AE D +PASL
Sbjct: 15 LTTALCAAFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 74
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKL 110
TK+MT+YV+ +K K T +T+ +A K G + + ++
Sbjct: 75 TKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRG 134
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDM
Sbjct: 135 INLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDM 194
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIV 229
A++ + D P ++ K G + N N + DG+KTG T +G+N+V
Sbjct: 195 ALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLV 254
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNL 285
ASA +G LI+ ++G R S LL+ GF + + + N
Sbjct: 255 ASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNT 314
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++V T + + + +K ++
Sbjct: 315 DRASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGTI 361
>gi|145639682|ref|ZP_01795285.1| hypothetical protein CGSHiII_09201 [Haemophilus influenzae PittII]
gi|145271239|gb|EDK11153.1| hypothetical protein CGSHiII_09201 [Haemophilus influenzae PittII]
gi|309750652|gb|ADO80636.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Haemophilus influenzae R2866]
Length = 393
Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats.
Identities = 90/341 (26%), Positives = 146/341 (42%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + A ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K N N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKNFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGALM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLVKGQVIGKVVYQ 354
>gi|165925339|ref|ZP_02221171.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|166212479|ref|ZP_02238514.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167422579|ref|ZP_02314332.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|165922946|gb|EDR40097.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|166206410|gb|EDR50890.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166958593|gb|EDR55614.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. MG05-1020]
Length = 380
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 88/330 (26%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 9 VNLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGK 68
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G + + + + ++S ND VA+A+ +
Sbjct: 69 IGAEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 128
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN K LGL THF HG+ G +++ARDMA++ + D P
Sbjct: 129 AGSQDSFVNLMNNYVKALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAI 188
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA G LI+V+LG
Sbjct: 189 YKEKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGG 248
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++ T
Sbjct: 249 HTFKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDSDRVQLGVDKDAYLTIPR 308
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + K ++
Sbjct: 309 GRMKDLKASYVLNTPEIHAPLAKNQVVGTI 338
>gi|238757942|ref|ZP_04619124.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC
35236]
gi|238703927|gb|EEP96462.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC
35236]
Length = 397
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 98/324 (30%), Positives = 147/324 (45%), Gaps = 11/324 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A Y L+D N+G ++AE D +PASLTK+M++YV+ LK K
Sbjct: 32 APTAPPVDAKAYVLMDYNSGKILAEGNSDQRLDPASLTKIMSSYVIGQALKAGKVHPDDL 91
Query: 80 ITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+T+ K+A K G + L + K ++++S ND ++A+A+ + ++
Sbjct: 92 VTVGKDAWATGNPALRGSSLMFLKPGDQVRLSDLNKGIVIQSGNDASIALADYIAGSQDS 151
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
FV MNN +K LGL+ THFM HG+ G Y+TARDMA+L + D P + K
Sbjct: 152 FVGLMNNYAKALGLANTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPDEYALHKEKEF 211
Query: 194 EIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ N N T L DGMKTGFT +G N+VASA G LI+V+LGA R
Sbjct: 212 TFNKIRQINRNRLLWSTNLNVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRIR 271
Query: 253 NKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
S LL+ GF I I + + + ++E+ T + N
Sbjct: 272 FNESEKLLTWGFRFYETVVPIKTTKPFITQKVWLGDTGQVDLGVAEDAAITIPKGQMKNL 331
Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332
+ D+ K ++
Sbjct: 332 KASYKLDQAELRAPLAKHQVVGTI 355
>gi|147677612|ref|YP_001211827.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
thermopropionicum SI]
gi|146273709|dbj|BAF59458.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
thermopropionicum SI]
Length = 381
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 85/318 (26%), Positives = 140/318 (44%), Gaps = 15/318 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
A L+D TG ++ E PAS TK+MTA + L +T+
Sbjct: 37 AFFITADAAVLMDARTGQILYEKNARQKRPPASTTKIMTALLALE-----GGDLQQIVTV 91
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S NA+ ++ + G +TL+ + +++S ND VAIAE + TE+ FV MN +
Sbjct: 92 SPNAASTGEASLDLRPGEKLTLEELIYGAMLESGNDACVAIAEHISGTEENFVLLMNQKA 151
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP- 201
K +G T F N++G+ GH TTARD+A+++ + + +G + G+K
Sbjct: 152 KMIGAEDTSFKNSNGLPAAGHCTTARDLAVITRYALRN-DIFRKVVSTRGRAVGGEKCRY 210
Query: 202 --NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN + ++ ADG+KTG T +G +VASA + + LI+V+L + D R S L
Sbjct: 211 LSNTNRLLWSYAWADGVKTGTTGEAGNCLVASATKDGRQLISVVLHSDD---RWLDSVKL 267
Query: 260 LSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
+ GF N + + + ++ EV ++ K + K
Sbjct: 268 MEFGFENFNLVQAVGRGEPIARVTVKEGTEKEVKAVAGAGIDAVVPKNGRERPEKAVEIK 327
Query: 317 ESHFIDFEKITLLKNKIT 334
+ +K L
Sbjct: 328 KDVIAPVQKGQYLGRVTI 345
>gi|114561878|ref|YP_749391.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella frigidimarina
NCIMB 400]
gi|114333171|gb|ABI70553.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella frigidimarina
NCIMB 400]
Length = 403
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 91/318 (28%), Positives = 141/318 (44%), Gaps = 10/318 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + Y L+D N+G VIAE NPASLTK+MT+YV+ ++ L
Sbjct: 42 TPDAPSVAAKAYVLMDYNSGRVIAEENAYESLNPASLTKMMTSYVIGHEIRVGNISLDDD 101
Query: 80 ITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ I+KNA S + G T+ + + + +I++S ND VA+AE + TE FV
Sbjct: 102 VAITKNAWAKNFPDSSKMFIEVGKTVKVHDLNRGIIIQSGNDACVAMAEHIAGTEGAFVD 161
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN+ +K LG+ ++F N+HG+ H TTA DMAIL + D P+ + K
Sbjct: 162 LMNSWAKQLGMKDSYFENSHGLDSENHKTTAYDMAILGAALIRDVPEEYKVYSEKSFTYN 221
Query: 197 GKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
G K N N L DG+KTG T +G+N+V+S LI+V++G + R
Sbjct: 222 GIKQYNRNGLLWDKSLNVDGIKTGHTSGAGYNLVSSGTSEGMRLISVVMGTSSESARKAE 281
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI------SEEVCTTQKEIINYNTQ 309
S LL+ GF QQ + + + ++ + +
Sbjct: 282 SKKLLNYGFRFFETITPYKAGDTFVTQQIWYGDRETVDLGVMTDTPITISRGKAKDLQAN 341
Query: 310 MKEAKDKESHFIDFEKIT 327
+ K + E +
Sbjct: 342 FELTKPLTAPLAKGETVG 359
>gi|170747925|ref|YP_001754185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
radiotolerans JCM 2831]
gi|170654447|gb|ACB23502.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
radiotolerans JCM 2831]
Length = 429
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 85/316 (26%), Positives = 143/316 (45%), Gaps = 8/316 (2%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
P+ L+D ++G V+ E D ++PAS+ KLMT +VF LK + + T T++++A +
Sbjct: 45 PHAILIDADSGSVLFEKAADERFSPASMAKLMTTDIVFEALKSGRLSMDTEFTVTEDAWK 104
Query: 89 YPPS-----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + + S + + + L+ LIV+S ND A+ IAE++ +E+ F MN +K
Sbjct: 105 RGGAGGGGSSMFAQVNSRIKMADLLRGLIVQSGNDAAITIAENMAGSEEAFAGLMNQRAK 164
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+GL+ + F NA G TARDMA L+ I +P Y F K + N
Sbjct: 165 EIGLTNSTFRNATGYSAPDQKVTARDMAKLALHIIDTYPDYYKIFSEKEFTWNKIRQQNR 224
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
N + +GADG+KTG+ SG+ + SA+Q Q L+ V+ G R S L+ G
Sbjct: 225 NPLLALDIGADGLKTGYLEESGYALTGSAVQNGQRLVLVVSGLKTARDRASESRKLMEWG 284
Query: 264 FYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
F R+ + S VP ++++ + + A
Sbjct: 285 FRAFEPRQVFAPGETVAEASVFGGQSGSVPLVAKKPVRVLLPRGSSDRVSARAIYTGPLI 344
Query: 321 IDFEKITLLKNKITKK 336
E+ + ++
Sbjct: 345 APVEEGQRVGILRVQR 360
>gi|83311550|ref|YP_421814.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
AMB-1]
gi|82946391|dbj|BAE51255.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
AMB-1]
Length = 388
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 75/341 (21%), Positives = 140/341 (41%), Gaps = 8/341 (2%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R +A+ +++ + + ++D +G V+ E D P+S++KLMT
Sbjct: 8 RSLAAALAVPLMALSATAGAQSIETAAKQAIIIDYASGQVLMEKNADELMVPSSMSKLMT 67
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSN----STFKKGSTMTLDNALKLLIVKSAN 117
++VF LK + + +S+ A + + ST T++ LK ++++S N
Sbjct: 68 VFMVFDKLKTGAWKPSDRLPVSETAWKRHYKSEGSLMFLPVNSTATVEELLKGVVIQSGN 127
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D +AE+ +E+ F + ++ +GL+ + F NA G + GH TARD+++L+ +
Sbjct: 128 DACSVLAEAHSGSEEAFAEEETRRARQIGLTRSVFKNASGWPEPGHLMTARDLSVLARHL 187
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
DFP+Y F G K N N + GADG+KTG T A+G+ + AS +G++
Sbjct: 188 IADFPEYYPLFSQMEFVFNGIKQGNRNPLLYNTPGADGLKTGHTEAAGYGLTASIKRGNR 247
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF----YQQNLSNEVPNIS 293
+I ++ G R + S L F + VP +
Sbjct: 248 RIIMILNGMSSMKERAEESRRLTEWAFREWETYALFKAGEEVIPDAEVWLGQKETVPLLI 307
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
++ + N + + +
Sbjct: 308 KDSLEVSMQRRNRLEMKVTTVYNGPIAAPVKAGQEVGKVVV 348
>gi|145636767|ref|ZP_01792433.1| hypothetical protein CGSHiHH_06620 [Haemophilus influenzae PittHH]
gi|145270065|gb|EDK10002.1| hypothetical protein CGSHiHH_06620 [Haemophilus influenzae PittHH]
Length = 393
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 91/341 (26%), Positives = 147/341 (43%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + A ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSAFSVSAEDMQFGITPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K PN N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGAFM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGKVVYQ 354
>gi|254477194|ref|ZP_05090580.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria sp. R11]
gi|214031437|gb|EEB72272.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria sp. R11]
Length = 405
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 151/343 (44%), Gaps = 11/343 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M+ + +A +L ++ + A + +LD T V+ D PAS++KLM
Sbjct: 21 MK---LAVAAGLLVSVSALSAAAFDTRARAAYVLDQETDTVLLNKNGDLALPPASMSKLM 77
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T YV F +++ + L + +S++A Y S + +++ L+ +IV S ND
Sbjct: 78 TLYVAFEAIRDGRLTLDERLPVSEHAMSYKGSTMFLNTQDRVRVEDLLRGIIVLSGNDAC 137
Query: 121 VAIAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
V IAE+L E F ++M ++ +G+ + F N++G GH + +D+AIL+ R+
Sbjct: 138 VVIAEALSPDGTEAGFARYMTKRAQEMGMENSTFANSNGWPAAGHRMSVQDLAILAERLI 197
Query: 179 TDFPQYMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
DFP+Y F K E N N +G +GADG+KTG T +G+ +V SA QG
Sbjct: 198 EDFPEYYPLFAEKRFEFDGRAPSNTRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAKQG 257
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNI 292
D+ +I VI G N R + + ++++ F + + + + V +
Sbjct: 258 DRRVIFVITGLDSTNARAEEAEAIVNWSFRQFAKKTVAKAGVPVAEAEVWRGAEPTVGLV 317
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E + + E K L + +
Sbjct: 318 PAEDLNILLPALAGDDIAAEVVYTGPIDAPITKGQKLAELVLQ 360
>gi|74095596|emb|CAJ27362.1| strongly similar to penicillin-binding protein 5 precursor
[Cronobacter sakazakii]
Length = 404
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 84/353 (23%), Positives = 147/353 (41%), Gaps = 21/353 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA----------ETNKLPYYTLLDTNTGHVIAENYPDHP 50
M++ V A+++ + + Y L+D N+G V+AE D
Sbjct: 10 MQRLAVTTALSVAALSTAAHADDLNIKTMIPGVPQIDAEAYILIDYNSGKVLAEQNADAR 69
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTL 104
+PASLTK+MT+YV+ +K K + +TI +A K G + +
Sbjct: 70 RDPASLTKMMTSYVIGQAMKAGKFKESDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPV 129
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
++ + ++S ND VA+A+ + ++ FV MN+ LGL THF HG+ G Y
Sbjct: 130 SQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYVTALGLKNTHFQTVHGLDADGQY 189
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCA 223
++ARDMA++ + D P ++ K G + N N + DG+KTG T
Sbjct: 190 SSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTDK 249
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KD 279
+G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 250 AGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKAGKEFASEP 309
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +++ T + + + K ++
Sbjct: 310 AWFGDNDRASLGVDKDIYLTIPRGRMKDLKASYVLNTSELHAPLAKNQVVGTI 362
>gi|125975657|ref|YP_001039567.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
ATCC 27405]
gi|125715882|gb|ABN54374.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
ATCC 27405]
Length = 418
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 79/315 (25%), Positives = 134/315 (42%), Gaps = 11/315 (3%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ ++D +TG V+ E AS TK+MTA V L +
Sbjct: 55 KPPRIEAKAAIVIDADTGRVLYEKDAYSRRAIASTTKIMTAIVAIEN-----GNLDDKVK 109
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+S A+ S K G +TL L ++++S ND A+A+AE + T + FV+ MN+
Sbjct: 110 VSSRAASIWGSTIKLKPGEELTLKELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDK 169
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
++ LGL T F HG+ GHY+TA ++A+L+ + P + K I +
Sbjct: 170 ARELGLKNTAFKTPHGLDVEGHYSTAYELAMLTRYALQN-PVFAQIVATKSTTITNRSLY 228
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
TN + + GADG+KTG+T +G +V SA + +I+V+L R+ R + S ++L
Sbjct: 229 TTNEMLSLYPGADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAESSKAILD 288
Query: 262 MGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
F N + + + Y+ + E + + + D E
Sbjct: 289 YAFNNYKPYELLRANQELGRVKVYKGKKDSVPVVAVESIKMPLSREEKEKLRTELTLD-E 347
Query: 318 SHFIDFEKITLLKNK 332
+ K +
Sbjct: 348 TIKAPVYKGVEVGKI 362
>gi|220931542|ref|YP_002508450.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H
168]
gi|219992852|gb|ACL69455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H
168]
Length = 397
Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats.
Identities = 96/323 (29%), Positives = 147/323 (45%), Gaps = 11/323 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
L+ NTG ++ E P PAS+TK+MT +V L++ +A L I +S
Sbjct: 35 FDLTAKSALLMQVNTGEILYEKNPHQKLPPASMTKIMTMLLVMEALEDGRASLRDSIIVS 94
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ A+ S + G MTL++ +K + + SAND VA+AE L TE+ FV+ MN ++
Sbjct: 95 ERAASMGGSQVYLEPGEEMTLEDLMKAIAIASANDACVAVAEYLYGTEEDFVKKMNEKAR 154
Query: 144 NLGLSATHFMNAHGVVQ-----HGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKG 197
LG T+F N +G+ G+YT+A D+AI+S + I L
Sbjct: 155 ELGCKNTYFYNTNGLPPGDPSVEGNYTSAYDLAIMSRELLKYPEVLKWTSTWIDYLRDGE 214
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
NTN V + G DG+KTG+T + F + +A + IAVI+GA R K +A
Sbjct: 215 FVLNNTNRLVRHYKGVDGIKTGYTEEAKFCVATTAARNGIRFIAVIMGADTSKARFKEAA 274
Query: 258 SLLSMGFYNKTDRKKINY--IIKDFYQQNLSNEVPNI--SEEVCTTQKEIINYNTQMKEA 313
LLS GF + +I + QN NE + +V K+ + K+
Sbjct: 275 QLLSYGFSKYRSFIVADKEEVIDEITIQNAKNEQARVLTRNKVVIPVKKGEE-DEITKKI 333
Query: 314 KDKESHFIDFEKITLLKNKITKK 336
KE+ +K + K
Sbjct: 334 IIKENIKAPLKKGDSVGKIRIYK 356
>gi|167037830|ref|YP_001665408.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|300914766|ref|ZP_07132082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X561]
gi|307724000|ref|YP_003903751.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X513]
gi|320116247|ref|YP_004186406.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166856664|gb|ABY95072.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|300889701|gb|EFK84847.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X561]
gi|307581061|gb|ADN54460.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X513]
gi|319929338|gb|ADV80023.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 421
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 89/359 (24%), Positives = 160/359 (44%), Gaps = 31/359 (8%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ + + I + ++ ++ + P L+D TG V+ + PAS
Sbjct: 1 MKKIIASLLTLFILVVQITPVYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK++TA + L +T S N ++ ++ G +TL+ L ++++S
Sbjct: 61 TTKILTAIIAIEK-----GNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+AIAE + + + F + MN +K +G +HF+N +G+ HY+T DMA+++
Sbjct: 116 ANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIAR 175
Query: 176 RIKTDFP--------QYMHYFQIKGLEIKGKKYPNT--NWAVGTFLGADGMKTGFTCASG 225
+ Y K +++ N + + GADG+KTG+T A+G
Sbjct: 176 YAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFRYEGADGVKTGYTVAAG 235
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ--Q 283
+ ASA + + LI+VI+G N + LL GF N + KK Y
Sbjct: 236 QVLAASATRDGRRLISVIMGDQGTNI-WTDTIKLLDYGFQNFSLVKKTEKGETITYIDLG 294
Query: 284 NLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHF-----IDFEKITLLKNKIT 334
++P I++E + + + TQ+ KD ++ + + K TL N+I
Sbjct: 295 KSHFKLPLIAKEDFYYEVPKGQENSIETQIILNKDIKTPINKGDVLGYIKYTLDGNEIG 353
>gi|300692700|ref|YP_003753695.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
[Ralstonia solanacearum PSI07]
gi|299079760|emb|CBJ52436.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
[Ralstonia solanacearum PSI07]
Length = 397
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 85/330 (25%), Positives = 146/330 (44%), Gaps = 15/330 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
A + L D +G V+ D PASLTKLMTAY+ F +++ K
Sbjct: 29 ALAQPVPAPQVAARAWMLTDVTSGQVLGGGNMDERIEPASLTKLMTAYLAFEAVRDGKLK 88
Query: 76 LTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+T ++ + + S + G + L+ LIV+S ND A+ +AE++ TE
Sbjct: 89 YDQMVTPTETVRSVKTDESRMFLQAGKPAAVRELLQGLIVQSGNDAALVLAEAVGGTEAN 148
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
FV MN ++ LG+ THFMNA G+ HYTTARD++IL+ + DFP+ ++ K
Sbjct: 149 FVMLMNREAERLGMKNTHFMNAAGLPDPNHYTTARDLSILTTALIRDFPEDYKFYSQKEF 208
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGA 246
K PN N + DG+KTG T ++G+ ++ SA + + L++V++G
Sbjct: 209 TYNNIKQPNRNRLLWIDPTVDGVKTGHTKSAGYCLITSAKRPLPDMPNASRRLLSVMIGT 268
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEE--VCTTQ 300
R + S +L+ G+ + D Y+ ++E+ + +
Sbjct: 269 KSEQVRTQESLKVLNYGYQFFDTLRLYEARQALQTPDVYKGQAKTVKLGVAEDKWITVPK 328
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ + + + + LK
Sbjct: 329 GSGSRLKPVLERKEPLIAPIAQGQPLGTLK 358
>gi|167040728|ref|YP_001663713.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X514]
gi|166854968|gb|ABY93377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter sp.
X514]
Length = 421
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 89/359 (24%), Positives = 159/359 (44%), Gaps = 31/359 (8%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ + + I + ++ ++ + P L+D TG V+ + PAS
Sbjct: 1 MKKIIASLLTLFILVVQITPVYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK++TA + L +T S N ++ ++ G +TL+ L ++++S
Sbjct: 61 TTKILTAIIAIEK-----GNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+AIAE + + + F + MN +K +G +HF+N +G+ HY+T DMA+++
Sbjct: 116 ANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIAR 175
Query: 176 RIKTDFP--------QYMHYFQIKGLEIKGKKYPNT--NWAVGTFLGADGMKTGFTCASG 225
+ Y K +++ N + + GADG+KTG T A+G
Sbjct: 176 YAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFRYEGADGVKTGDTVAAG 235
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ--Q 283
+ ASA + + LI+VI+G N + LL GF N + KK Y
Sbjct: 236 QVLAASATRDGRRLISVIMGDQGTNI-WTDTIKLLDYGFQNFSLVKKTEKGETITYIDLG 294
Query: 284 NLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHF-----IDFEKITLLKNKIT 334
++P I++E + + + TQ+ KD ++ + + K TL N+I
Sbjct: 295 KSHFKLPLIAKEDFYYEVPKGQENSIETQIILNKDIKTPINKGDVLGYIKYTLDGNEIG 353
>gi|281416665|ref|ZP_06247685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
JW20]
gi|281408067|gb|EFB38325.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
JW20]
Length = 396
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 79/315 (25%), Positives = 134/315 (42%), Gaps = 11/315 (3%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ ++D +TG V+ E AS TK+MTA V L +
Sbjct: 33 KPPRIEAKAAIVIDADTGRVLYEKDAYSRRAIASTTKIMTAIVAIEN-----GNLDDKVK 87
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+S A+ S K G +TL L ++++S ND A+A+AE + T + FV+ MN+
Sbjct: 88 VSSRAASIWGSTIKLKPGEELTLRELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDK 147
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
++ LGL T F HG+ GHY+TA ++A+L+ + P + K I +
Sbjct: 148 ARELGLKNTAFKTPHGLDVEGHYSTAYELAMLTRYALQN-PVFAQIVATKSTTITNRSLY 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
TN + + GADG+KTG+T +G +V SA + +I+V+L R+ R + S ++L
Sbjct: 207 TTNEMLSLYPGADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAESSKTILD 266
Query: 262 MGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
F N + + + Y+ + E + + + D E
Sbjct: 267 YAFNNYKPYELLRANQELGRVKVYKGKKDSVPVVAVESIKMPLSREEKEKLRTELTLD-E 325
Query: 318 SHFIDFEKITLLKNK 332
+ K +
Sbjct: 326 TIKAPVYKGVEVGKI 340
>gi|256752163|ref|ZP_05493029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
ethanolicus CCSD1]
gi|256748977|gb|EEU62015.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
ethanolicus CCSD1]
Length = 421
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 89/359 (24%), Positives = 160/359 (44%), Gaps = 31/359 (8%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ + + I + ++ ++ + P L+D TG V+ + PAS
Sbjct: 1 MKKIIASLLTLFILVVQITPVYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK++TA + L +T S N ++ ++ G +TL+ L ++++S
Sbjct: 61 TTKILTAIIAIEK-----GNLNDIVTASNNVTKIDGNSIFLSPGEQLTLEQLLYAIMLQS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+AIAE + + + F + MN +K +G +HF+N +G+ HY+T DMA+++
Sbjct: 116 ANDAAIAIAEHIGGSVENFAKMMNEKAKEIGAYDSHFVNPNGLPDDNHYSTPYDMALIAR 175
Query: 176 RIKTDFP--------QYMHYFQIKGLEIKGKKYPNT--NWAVGTFLGADGMKTGFTCASG 225
+ Y K +++ N + + GADG+KTG+T A+G
Sbjct: 176 YAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFRYEGADGVKTGYTVAAG 235
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ--Q 283
+ ASA + + LI+VI+G N + LL GF N + KK Y
Sbjct: 236 QVLAASATRDGRRLISVIMGDQGTNI-WTDTIKLLDYGFQNFSLVKKTEKGETITYIDLG 294
Query: 284 NLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHF-----IDFEKITLLKNKIT 334
++P I++E + + + TQ+ KD ++ + + K TL N+I
Sbjct: 295 KSHFKLPLIAKEDFYYEVPKGQENSIETQIILNKDIKTPINKGDVLGYIKYTLDGNEIG 353
>gi|157145043|ref|YP_001452362.1| D-alanyl-D-alanine carboxypeptidase [Citrobacter koseri ATCC
BAA-895]
gi|157082248|gb|ABV11926.1| hypothetical protein CKO_00774 [Citrobacter koseri ATCC BAA-895]
Length = 420
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 84/336 (25%), Positives = 147/336 (43%), Gaps = 11/336 (3%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++ A+ +++ F + + L+D TG ++ NPASLTKLMT YVV
Sbjct: 48 LSSALAADVPDFSPQPPAIQAGSWVLMDYTTGQILTAGNEHQRRNPASLTKLMTGYVVDR 107
Query: 68 FLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + +T+ ++A K+G +++ + + LIV S ND V
Sbjct: 108 AIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKQGERVSVRDLSRGLIVDSGNDACV 167
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+A+ + + +FV MN+ + L L THF HG+ G +++A D+A+LS I
Sbjct: 168 ALADYIAGGQPQFVAMMNHYVETLKLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGE 227
Query: 182 PQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P++ H + K L G N N + DG+KTG T +GFN++AS++ G + LI
Sbjct: 228 PEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNIDGLKTGHTSGAGFNLIASSVDGQRRLI 287
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEV 296
AV++GA R + LL G N + + + + + N ++
Sbjct: 288 AVVMGAESAKGREDQARKLLQWGQQNFDTVQILRSGKQVGTERIWYGDKENIALGTEQDF 347
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + + A DK+ +
Sbjct: 348 WMALPKTEIPHIKARYALDKKELEAPIAAHQRVGEI 383
>gi|168210830|ref|ZP_02636455.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str.
ATCC 3626]
gi|170711096|gb|EDT23278.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str.
ATCC 3626]
Length = 402
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 87/357 (24%), Positives = 158/357 (44%), Gaps = 22/357 (6%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++++ I +++ S + AE + L++ +TG +I E + +
Sbjct: 1 MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K +
Sbjct: 61 PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND AVA+AE L +E FV+ MN +K LG+ T F N G+ GH +TA D++I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTFKNCTGLPIEGHLSTAYDISI 180
Query: 173 LSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+S + + I + N N V F G DG+KTGFT + + I
Sbjct: 181 MSRELLKHPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYCI 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQN 284
A+A + +++VI+GA RN+ ++ L++ GF ++ + Q
Sbjct: 241 SATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEVEQIPMSQTG 300
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMK------EAKDKESHFIDFEKITLLKNKITK 335
+ +++ + ++ + K + K KE I + + L + K
Sbjct: 301 DKFIIGKAKDDLTLVCPKGMSEKIEKKVVLDESKKKIKEFDTIGYCEYYLDGELLGK 357
>gi|312171895|emb|CBX80152.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora ATCC
BAA-2158]
Length = 402
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 143/325 (44%), Gaps = 11/325 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ A + L+D N+ V+AE D +PASLTK+M++YV+ LK K
Sbjct: 32 QMPAAPQLDAKAWILMDYNSSKVLAEYNADLRLDPASLTKMMSSYVIGQALKAGKISKDD 91
Query: 79 PITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+T+ K+A K G + + K ++++S ND ++A+A+ + ++
Sbjct: 92 VVTVGKDAWATGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQSGNDASIALADYVAGSQD 151
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
FV MN+ + LGL THF HG+ +G Y+TARDMA++ + D P + K
Sbjct: 152 AFVGLMNHYVQALGLKNTHFKTVHGLDANGQYSTARDMALIGQALIRDVPDEYALHKDKA 211
Query: 193 LEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ N N T L DG+KTG T +G N+VASA+ GD+ +I+V+LGA
Sbjct: 212 FTFNKIRQHNRNRLLWSTNLQVDGIKTGHTSGAGNNLVASAVDGDRRIISVVLGAATDAV 271
Query: 252 RNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R + S LL G N + + + + ++++ T N
Sbjct: 272 RFRESEKLLIWGLRNFETVTPVKAGNAFVTQRVWYGDRHEVNLGVAQDAAITLPHGQMKN 331
Query: 308 TQMKEAKDKESHFIDFEKITLLKNK 332
+ + K ++
Sbjct: 332 LKASFTLSQPQLTAPLAKNQVVGTI 356
>gi|329123117|ref|ZP_08251687.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus aegyptius
ATCC 11116]
gi|327471672|gb|EGF17114.1| D-alanyl-D-alanine carboxypeptidase DacA [Haemophilus aegyptius
ATCC 11116]
Length = 393
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 91/341 (26%), Positives = 148/341 (43%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + A ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K PN N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + + +
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEASKVISEQPVYYGDKGSVKLGTLQ 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + + ++ K ++ + +
Sbjct: 314 DRFITIPKGKQNELKARYEFEGKNLQAPLAKGQIVGKVVYQ 354
>gi|251790547|ref|YP_003005268.1| D-alanyl-D-alanine carboxypeptidase fraction A [Dickeya zeae
Ech1591]
gi|247539168|gb|ACT07789.1| Beta-lactamase [Dickeya zeae Ech1591]
Length = 403
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 87/351 (24%), Positives = 148/351 (42%), Gaps = 20/351 (5%)
Query: 2 RQFLVIIAMAMLSNIFPF---------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
++ + +A+ ++ F + + Y L+D N+G V+AE D N
Sbjct: 11 KRIALGTLLAISASTFAYADDINLKTMIPAVPDIDAEAYILIDYNSGKVLAEKNADTRRN 70
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS------EYPPSNSTFKKGSTMTLDN 106
PASLTK+MT+YV+ +K K +TI K+A S K G + +
Sbjct: 71 PASLTKMMTSYVIGQAIKAGKITPNDVVTIGKDAWATGNPDFQGSSLMFLKPGDRVPVYL 130
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
K +I++S ND VA+A+ + ++ FV MN K LGL T+F HG+ G +++
Sbjct: 131 LNKGIILQSGNDACVAMADYVAGSQDAFVNLMNGYVKALGLQNTNFKTVHGLDAEGQFSS 190
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
ARDMA++ + D P ++ K + N N + L DG+KTG T ++G
Sbjct: 191 ARDMALIGQALIRDVPDEYATYKEKEFTFNNIRQMNRNGLLWDSSLAVDGIKTGHTASAG 250
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFY 281
+N+VASA +G LI+ ++G R S LL+ GF + + +
Sbjct: 251 YNLVASATEGQVRLISAVMGGRTFKGREAESKKLLTWGFRFFETVAPLKTGKEFASEPVW 310
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++ T + + K ++
Sbjct: 311 FGDSDRVSLGVDKDAYITIPRGRMKDLKASYVLTNTELHAPLAKNQVVGTI 361
>gi|260582057|ref|ZP_05849852.1| D-alanyl-D-alanine carboxypeptidase [Haemophilus influenzae NT127]
gi|260094947|gb|EEW78840.1| D-alanyl-D-alanine carboxypeptidase [Haemophilus influenzae NT127]
Length = 393
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 91/341 (26%), Positives = 146/341 (42%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F + A ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FAALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K PN N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGAFM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGKVVYQ 354
>gi|168206139|ref|ZP_02632144.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str.
JGS1987]
gi|170662449|gb|EDT15132.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str.
JGS1987]
Length = 402
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 86/357 (24%), Positives = 158/357 (44%), Gaps = 22/357 (6%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++++ I +++ S + AE + L++ +TG +I E + +
Sbjct: 1 MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K +
Sbjct: 61 PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND AVA+AE L +E FV+ MN ++ LG+ T F N G+ GH +TA D++I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAQELGMKNTTFKNCTGLPIEGHLSTAYDISI 180
Query: 173 LSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+S + + I + N N V F G DG+KTGFT + + I
Sbjct: 181 MSRELLKHPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYCI 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQN 284
A+A + +++VI+GA RN+ ++ L++ GF ++ + Q
Sbjct: 241 SATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDSEVEQIPMSQTG 300
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMK------EAKDKESHFIDFEKITLLKNKITK 335
+ +++ + ++ + K + K KE I + + L + K
Sbjct: 301 DKFIIGKAKDDLTLVCPKGMSDKIEKKVILDESKKKIKEFDTIGYCEYYLDGELLGK 357
>gi|293395975|ref|ZP_06640256.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
4582]
gi|291421473|gb|EFE94721.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
4582]
Length = 382
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 91/345 (26%), Positives = 150/345 (43%), Gaps = 18/345 (5%)
Query: 6 VIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++I + + + Y L+D +G ++A+N+ D NPASLTK
Sbjct: 1 MVIGILLPLAAQAADTAGDFPSLTPPPIDAASYVLMDYASGQIMAQNHADQRRNPASLTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLI 112
LMT V+ L + K L +T+ K+A K G +T+ + + +I
Sbjct: 61 LMTGLVIDHALDQHKISLDDVVTVGKDAWAAGNPVFKGSSLMFLKPGDRVTVRDLSRGII 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND VA+A+ + ++ FV MNN + LGL THF HG+ G YTTA D+A+
Sbjct: 121 IDSGNDACVAMADYVAGSQTAFVDLMNNKAAQLGLKNTHFETVHGLDAPGQYTTAGDLAV 180
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
+S I P H + + L G N N L DG+KTG T ++GFNI+AS
Sbjct: 181 ISRAIIMSEPAEYHMYSERSLTWNGITQQNRNGLLWDKTLHVDGLKTGHTESAGFNIIAS 240
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSN 287
A +GD+ LIAV++G R + + LLS G + + + + + S
Sbjct: 241 ATEGDRRLIAVVMGGKSPKGREEQARKLLSWGLRDFDSVRVFKAGQPLGNEAVWYGDRSR 300
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++++ T + + + + + +
Sbjct: 301 IAVGVAQDRYLTLPKGEASKLKAQYVLNVPRLEAPLPQGQTVGEV 345
>gi|167835257|ref|ZP_02462140.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis MSMB43]
Length = 374
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 84/332 (25%), Positives = 149/332 (44%), Gaps = 15/332 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + L+D ++ V+A D PASLTKLMTAY+VF L KK
Sbjct: 3 ATYVPGAVPPPGVNARSWVLVDASSNQVLASGNADERVEPASLTKLMTAYLVFEALDAKK 62
Query: 74 AMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ +T + S + +++ + + +I++S ND A+A+AE + +E
Sbjct: 63 ITMEQIVTPGEAVRRVGRDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSE 122
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+FV MN ++ LG++ THF + +G+ HYTTA D+A LS + D+P Y + F +K
Sbjct: 123 GQFVNMMNAQAQRLGMTNTHFADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVK 182
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVIL 244
K PN N + DG+KTG T A+G+ ++ASA + + L+ V++
Sbjct: 183 EFAYNNIKQPNRNRLLWLDPTVDGLKTGHTQAAGYCLIASAKRSLPGAADATRRLVTVMM 242
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCT 298
G + R + S +LS G+ + Y+ +N + ++ +
Sbjct: 243 GETKESDRVQDSMKMLSYGYTAFDSVRLYKAGQPIDTPRVYKGKSNNVQVGVKKDQFITV 302
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + D + + +K
Sbjct: 303 PRGLADKVKPEVALNAPLIAPLADGQAVGSVK 334
>gi|182625695|ref|ZP_02953464.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str.
JGS1721]
gi|177909097|gb|EDT71572.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str.
JGS1721]
Length = 402
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 86/357 (24%), Positives = 158/357 (44%), Gaps = 22/357 (6%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++++ I +++ S + AE + L++ +TG +I E + +
Sbjct: 1 MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K +
Sbjct: 61 PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND AVA+AE L +E FV+ MN ++ LG+ T F N G+ GH +TA D++I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAQELGMKNTTFKNCTGLPIEGHLSTAYDISI 180
Query: 173 LSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+S + + I + N N V F G DG+KTGFT + + I
Sbjct: 181 MSRELLKHPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYCI 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQN 284
A+A + +++VI+GA RN+ ++ L++ GF ++ + Q
Sbjct: 241 SATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEVEQIPMSQTG 300
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMK------EAKDKESHFIDFEKITLLKNKITK 335
+ +++ + ++ + K + K KE I + + L + K
Sbjct: 301 DKFIIGKAKDDLTLVCPKGMSDKIEKKVVLDESKKKIKEFDTIGYCEYYLDGELLGK 357
>gi|18310788|ref|NP_562722.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium perfringens
str. 13]
gi|110799537|ref|YP_696490.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC
13124]
gi|168214381|ref|ZP_02640006.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE
str. F4969]
gi|18145469|dbj|BAB81512.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium perfringens
str. 13]
gi|110674184|gb|ABG83171.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC
13124]
gi|170714156|gb|EDT26338.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE
str. F4969]
Length = 402
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 87/357 (24%), Positives = 158/357 (44%), Gaps = 22/357 (6%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++++ I +++ S + AE + L++ +TG +I E + +
Sbjct: 1 MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K +
Sbjct: 61 PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND AVA+AE L +E FV+ MN +K LG+ T F N G+ GH +TA D++I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTFKNCTGLPIEGHLSTAYDISI 180
Query: 173 LSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+S + + I + N N V F G DG+KTGFT + + I
Sbjct: 181 MSRELLKHPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYCI 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQN 284
A+A + +++VI+GA RN+ ++ L++ GF ++ + Q
Sbjct: 241 SATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEVEQIPMSQTG 300
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMK------EAKDKESHFIDFEKITLLKNKITK 335
+ +++ + ++ + K + K KE I + + L + K
Sbjct: 301 DKFIIGKAKDDLTLVCPKGMSDKIEKKVVLDESKKKIKEFDTIGYCEYYLDGELLGK 357
>gi|68248580|ref|YP_247692.1| penicillin-binding protein 5 [Haemophilus influenzae 86-028NP]
gi|68056779|gb|AAX87032.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
86-028NP]
Length = 393
Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats.
Identities = 90/341 (26%), Positives = 146/341 (42%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + A ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K N N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGALM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGKVVYQ 354
>gi|161504189|ref|YP_001571301.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865536|gb|ABX22159.1| hypothetical protein SARI_02296 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 403
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 84/347 (24%), Positives = 141/347 (40%), Gaps = 18/347 (5%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ +S + Y L+D N+G V+AE D +PASL
Sbjct: 15 LTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 74
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKL 110
TK+MT+YV+ +K K T +T+ +A K G + + ++
Sbjct: 75 TKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRG 134
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDM
Sbjct: 135 INLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDM 194
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIV 229
A++ + D P ++ K G + N N + DG+KTG T +G+N+V
Sbjct: 195 ALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLV 254
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNL 285
ASA +G LI+ ++G R S LL+ GF + + + N
Sbjct: 255 ASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNT 314
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++V T + + + +K ++
Sbjct: 315 DRASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGTI 361
>gi|16759596|ref|NP_455213.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29142631|ref|NP_805973.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56414228|ref|YP_151303.1| D-alanyl-D-alanine carboxypeptidase subunit A [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197363151|ref|YP_002142788.1| D-alanyl-D-alanine carboxypeptidase subunit A [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|25297769|pir||AH0580 D-alanine carboxypeptidase [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16501888|emb|CAD05114.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138262|gb|AAO69833.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56128485|gb|AAV77991.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197094628|emb|CAR60150.1| D-alanine carboxypeptidase [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 403
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 84/347 (24%), Positives = 141/347 (40%), Gaps = 18/347 (5%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ +S + Y L+D N+G V+AE D +PASL
Sbjct: 15 LTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 74
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKL 110
TK+MT+YV+ +K K T +T+ +A K G + + ++
Sbjct: 75 TKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRG 134
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDM
Sbjct: 135 INLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDM 194
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIV 229
A++ + D P ++ K G + N N + DG+KTG T +G+N+V
Sbjct: 195 ALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLV 254
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNL 285
ASA +G LI+ ++G R S LL+ GF + + + N
Sbjct: 255 ASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNT 314
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++V T + + + +K ++
Sbjct: 315 DRASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGTI 361
>gi|37525261|ref|NP_928605.1| D-alanyl-D-alanine carboxypeptidase fraction A [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36784688|emb|CAE13588.1| penicillin-binding protein 5 precursor (D-alanyl-D-alanine
carboxypeptidase fraction A) (DD-peptidase)
(DD-caroboxypeptidase) (PBP-5) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 389
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 89/345 (25%), Positives = 151/345 (43%), Gaps = 20/345 (5%)
Query: 8 IAMAMLSNIFPFLSIA---------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
IA+A+ ++ F + A Y L+D N+G V+AE D +PASLTK
Sbjct: 3 IALAISASAFANGNDANLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADAHRDPASLTK 62
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLI 112
+MT+YV+ +K K + +T+ +A K G +++ + +
Sbjct: 63 MMTSYVIGQAIKSGKIHPSDMVTVGTDAWATGNPVFKGSSLMFLKPGDQVSVSMLSRGIN 122
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
++S ND VA+A+ + +++ FV MN K+LGL T+F HG+ G Y++ARDMA+
Sbjct: 123 LQSGNDACVAMADYVAGSQESFVNLMNGYVKSLGLKNTNFKTVHGLDAEGQYSSARDMAL 182
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVAS 231
+ + D P+ ++ K + N N L DG+KTG T A+G+N+VAS
Sbjct: 183 IGQALIRDVPEEYTIYKEKEFTYNNIRQTNRNGLLWDKSLNVDGIKTGHTSAAGYNLVAS 242
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSN 287
A +GD LI+ +LG R S LL+ GF + + + +
Sbjct: 243 ATEGDMRLISAVLGGHTYKGRETESKKLLTWGFRFFETVAPLKASKEFASEPVWFGDNDR 302
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++V T + + + K ++
Sbjct: 303 VQLGVDKDVYLTIPRGRLKDLKASYVMNNSELHAPLAKNQVVGTI 347
>gi|319774981|ref|YP_004137469.1| penicillin-binding protein 5 [Haemophilus influenzae F3047]
gi|317449572|emb|CBY85777.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
F3047]
Length = 393
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 90/341 (26%), Positives = 146/341 (42%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + A ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K N N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + + +
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKVISEQPVYYGDKGSVKLGTLQ 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DRFITIPKGKQNELKAHYELEGKNLQAPLAKGQIVGKVVYQ 354
>gi|262368687|ref|ZP_06062016.1| penicillin-binding protein 6 [Acinetobacter johnsonii SH046]
gi|262316365|gb|EEY97403.1| penicillin-binding protein 6 [Acinetobacter johnsonii SH046]
Length = 382
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 85/339 (25%), Positives = 146/339 (43%), Gaps = 12/339 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ + +S LS Y L+D TG ++A + PAS+TK+MT++
Sbjct: 7 LAAALLVPSISFAATVLSSPPELNNKSYVLMDYETGQILASKNENEKLAPASMTKMMTSF 66
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + ++++A S T T L+ +I++S ND +
Sbjct: 67 IIEQKLLAGELTEDEKVRMNESAWCRGSSSESCMYVPLNGTATALEMLRGIIIQSGNDAS 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E FV MN +K +G++ T FMN+ G+ GHY+TA+DMA L+ I D
Sbjct: 127 KAMAEHIAGNEGTFVHMMNTEAKRIGMTNTSFMNSTGMPAEGHYSTAKDMATLAQHIIHD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + SA +G LI
Sbjct: 187 SSKYYPIYSEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSAKRGPMRLI 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE-- 294
+VI GA R + +L+ G+ N + + S+ ++E
Sbjct: 247 SVIFGAPSMQERATQTREILAWGYANFETKNVQAANQVLAKSKVWFGKESDVQIGLAETF 306
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
V + + TQ+ + +K ++ +
Sbjct: 307 NVTMPKGQANAIKTQLVV---QPKLTAPLKKGQVVGKYV 342
>gi|213425100|ref|ZP_03357850.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|289823664|ref|ZP_06543276.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
Length = 427
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 84/347 (24%), Positives = 141/347 (40%), Gaps = 18/347 (5%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ +S + Y L+D N+G V+AE D +PASL
Sbjct: 39 LTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 98
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKL 110
TK+MT+YV+ +K K T +T+ +A K G + + ++
Sbjct: 99 TKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRG 158
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDM
Sbjct: 159 INLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDM 218
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIV 229
A++ + D P ++ K G + N N + DG+KTG T +G+N+V
Sbjct: 219 ALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLV 278
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNL 285
ASA +G LI+ ++G R S LL+ GF + + + N
Sbjct: 279 ASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNT 338
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++V T + + + +K ++
Sbjct: 339 DRASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGTI 385
>gi|213646564|ref|ZP_03376617.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
Length = 427
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 84/347 (24%), Positives = 140/347 (40%), Gaps = 18/347 (5%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ +S Y L+D N+G V+AE D +PASL
Sbjct: 39 LTTALCATFISTAHADDLNIKTMTPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 98
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKL 110
TK+MT+YV+ +K K T +T+ +A K G + + ++
Sbjct: 99 TKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRG 158
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDM
Sbjct: 159 INLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDM 218
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIV 229
A++ + D P ++ K G + N N + DG+KTG T +G+N+V
Sbjct: 219 ALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLV 278
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNL 285
ASA +G LI+ ++G R S LL+ GF + + + N
Sbjct: 279 ASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNT 338
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++V T + + + +K ++
Sbjct: 339 DRASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGTI 385
>gi|153855284|ref|ZP_01996450.1| hypothetical protein DORLON_02464 [Dorea longicatena DSM 13814]
gi|149752283|gb|EDM62214.1| hypothetical protein DORLON_02464 [Dorea longicatena DSM 13814]
Length = 393
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 99/327 (30%), Positives = 158/327 (48%), Gaps = 14/327 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
E P L++ +TG +I E PD PAS+TK+MT ++F L + L +T S
Sbjct: 36 EQISAPSAILMEASTGQIIYEKNPDEKLPPASVTKVMTLLLIFDALDSGQIKLGDEVTTS 95
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ A+ S + G T T+D +K + V SAND V +AE +C E++FV MN +K
Sbjct: 96 EYAASMGGSQVFLEPGETQTVDTLIKCISVASANDACVTMAEYICGNEEEFVTKMNKRAK 155
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--- 200
+LG+ THF+N +G+ GH TTARD+A++S + T +PQ Y I I K
Sbjct: 156 DLGMKNTHFVNCNGLDADGHLTTARDIALMSKELITTYPQIFDYCNIWMENIIHKTQKGE 215
Query: 201 -----PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
NTN + + A G+KTG T + F + A+ + D LIAVI+ A D R +
Sbjct: 216 SEFGLTNTNKLIRQYEYATGLKTGSTSKAKFCVSATGRKDDIDLIAVIMAADDSKARVRD 275
Query: 256 SASLLSMGFYNK-TDRKKINYIIKDFYQQNLSNEVPNISEE-----VCTTQKEIINYNTQ 309
+ +LL+ GF +K I + + + ++ V TT ++ +
Sbjct: 276 AITLLNYGFGKCQKYTEKKQKKISPVEVRGGREKQVKVRQQGAFTYVDTTGADLTKIENK 335
Query: 310 MKEAKDKESHFIDFEKITLLKNKITKK 336
++ K+ ++ EK+ + K
Sbjct: 336 TRKDKNVKAPLKKGEKVGETMYYLNGK 362
>gi|146340768|ref|YP_001205816.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium
sp. ORS278]
gi|146193574|emb|CAL77591.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [Bradyrhizobium
sp. ORS278]
Length = 384
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 86/313 (27%), Positives = 134/313 (42%), Gaps = 9/313 (2%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
P L++ +G V+ E D P+S+ KLMTA VVF+ +KE L IS+NA
Sbjct: 22 DAPTAILVEATSGSVLFEKNADELRAPSSMMKLMTAEVVFNAVKEGTVKLNDEYRISENA 81
Query: 87 SEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV-QHMNN 140
S S + + + L I++S ND +A+AE + EK F +M
Sbjct: 82 WRKGGAPSGTSTMFAALNSKVPVSDLLHGAIIQSGNDACIALAEGMAGNEKIFAADYMTK 141
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
++ LGLS + F N++G+ G+ T R++++L+ I DFP++ F K +
Sbjct: 142 RARELGLSKSTFANSNGLPDPGNKMTVRELSMLARHIILDFPEFYKIFGEKEFTWNKIRQ 201
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N + GADG+KTG+T G+ +V SA+Q LI V+ G D R + +L
Sbjct: 202 QNRNPLLNAMEGADGLKTGYTKEGGYGMVGSAVQNGTRLIVVVNGLEDPEDRATEAKKML 261
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK---EAKDKE 317
GF N R Y + E ++ K ++ N K
Sbjct: 262 EWGFRNFETRTLFAADQTLGYAKVFGGESRSVKLSSPVPVKVMVQKNGGEKLLARIIYSG 321
Query: 318 SHFIDFEKITLLK 330
E +
Sbjct: 322 PVKAPVEAGQKVG 334
>gi|261341254|ref|ZP_05969112.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
ATCC 35316]
gi|288316558|gb|EFC55496.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
ATCC 35316]
Length = 403
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 83/330 (25%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K
Sbjct: 32 LNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
T +TI +A K G + + ++ + ++S ND VA+A+
Sbjct: 92 FKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFA 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN+ LGL +HF HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDAFVGLMNSYVTALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYTI 211
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K G + N N + DG+KTG T +G+N+VASA +G LI+ ++G
Sbjct: 212 YKEKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTEKAGYNLVASATEGQMRLISAVMGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + +++ T
Sbjct: 272 RTFKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPVWFGDNDRASLGVDKDLYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +K ++
Sbjct: 332 GRMKDLKASYVLNTSELHAPLQKNQVVGTI 361
>gi|259908963|ref|YP_002649319.1| D-alanyl-D-alanine carboxypeptidase [Erwinia pyrifoliae Ep1/96]
gi|224964585|emb|CAX56098.1| D-alanyl-D-alanine carboxypeptidase [Erwinia pyrifoliae Ep1/96]
gi|283478973|emb|CAY74889.1| dacC [Erwinia pyrifoliae DSM 12163]
Length = 402
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 144/325 (44%), Gaps = 11/325 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ A + L+D ++ V+AE+ D +PASLTK+M++YV+ LK K
Sbjct: 32 QMPAAPQIDAKAWILMDYSSSKVLAESNADLRLDPASLTKMMSSYVIGQALKAGKIGKDD 91
Query: 79 PITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+T+ K+A K G + + K ++++S ND ++A+A+ + ++
Sbjct: 92 LVTVGKDAWATGNPVLKGSSLMFLKPGDHIAVSELNKGIVIQSGNDASIALADYVAGSQD 151
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
FV MNN + LGL THF HG+ G Y+TARDMA++ + D P + K
Sbjct: 152 AFVGLMNNYVQALGLKNTHFKTVHGLDASGQYSTARDMALIGQALIRDVPDEYALHKEKV 211
Query: 193 LEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ N N T L DG+KTG T +G N+VASA+ GD+ +I+V+LGA
Sbjct: 212 FTFNNIRQYNRNRLLWSTSLQVDGIKTGHTSGAGNNLVASAVDGDRRMISVVLGAATDAI 271
Query: 252 RNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R + S LL+ G N + + + + ++++ T N
Sbjct: 272 RFRESEKLLTWGLRNFETVTPVKAGKAFVTQRVWYGDRQKVNLGVAQDAAITLPHGQMKN 331
Query: 308 TQMKEAKDKESHFIDFEKITLLKNK 332
+ + K ++
Sbjct: 332 LKASFTLSQPQLTAPLAKNQVVGTL 356
>gi|156934847|ref|YP_001438763.1| D-alanyl-D-alanine carboxypeptidase fraction A [Cronobacter
sakazakii ATCC BAA-894]
gi|156533101|gb|ABU77927.1| hypothetical protein ESA_02695 [Cronobacter sakazakii ATCC BAA-894]
Length = 428
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 84/353 (23%), Positives = 147/353 (41%), Gaps = 21/353 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA----------ETNKLPYYTLLDTNTGHVIAENYPDHP 50
M++ V A+++ + + Y L+D N+G V+AE D
Sbjct: 34 MQRLAVTTALSVAALSTAAHADDLNIKTMIPGVPQIDAEAYILIDYNSGKVLAEQNADAR 93
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTL 104
+PASLTK+MT+YV+ +K K + +TI +A K G + +
Sbjct: 94 RDPASLTKMMTSYVIGQAMKAGKFKESDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPV 153
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
++ + ++S ND VA+A+ + ++ FV MN+ LGL THF HG+ G Y
Sbjct: 154 SQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYVTALGLKNTHFQTVHGLDADGQY 213
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCA 223
++ARDMA++ + D P ++ K G + N N + DG+KTG T
Sbjct: 214 SSARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTDK 273
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KD 279
+G+N+VASA +G LI+ ++G R S LL+ GF + +
Sbjct: 274 AGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKAGKEFASEP 333
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +++ T + + + K ++
Sbjct: 334 AWFGDNDRASLGVDKDIYLTIPRGRMKDLKASYVLNTSELHAPLAKNQVVGTI 386
>gi|309972837|gb|ADO96038.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5
[Haemophilus influenzae R2846]
Length = 393
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 90/341 (26%), Positives = 146/341 (42%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + A ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSAFSVFAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K N N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGAFM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGKVVYQ 354
>gi|229845375|ref|ZP_04465506.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
6P18H1]
gi|229811683|gb|EEP47381.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
6P18H1]
Length = 393
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 90/341 (26%), Positives = 146/341 (42%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + A ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSAFSVSAEDMQFGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K N N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGAFM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGKVVYQ 354
>gi|114770997|ref|ZP_01448437.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium
HTCC2255]
gi|114548279|gb|EAU51165.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium
HTCC2255]
Length = 382
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 80/337 (23%), Positives = 151/337 (44%), Gaps = 4/337 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M+ F II + +++ I + A ++D TG ++ D PAS++KLM
Sbjct: 1 MKSFYKIITIFIITLITSPV-NAFDTIARSAMVIDQTTGTILMAKDADRRVPPASMSKLM 59
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T +++F L++++ + T +S+ A++ S ++G +++ + ++ +IV+S ND
Sbjct: 60 TLFMLFEALRDERIAMDTEFLVSERATKIGGSTMFLREGERVSVRDLIQGIIVQSGNDAC 119
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+ +AE++ TE F M + LG++ + F N+ G +ARD+ ++ I T+
Sbjct: 120 ITVAENIAGTETAFADQMTKRAIELGMNNSSFGNSTGWPDPLQRMSARDLVTIANIIITE 179
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP Y +F G K N N + +GADG+KTG T +G+ +V SA QG + +I
Sbjct: 180 FPNYYPFFAQTSFTWDGVKQNNRNPLLPLGIGADGLKTGHTNEAGYGLVGSARQGQRRII 239
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVC 297
+I G + R + L + F + I K + + I+E+
Sbjct: 240 FMITGLESKAARANEAEKLTNWAFRQFVIKDLFKKDEVISKADVWLGENKTIDLIAEDNI 299
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + + E K +K +
Sbjct: 300 SGLFPLGSLKNVDIEINYKGPIAAPIKKGDRIAILTV 336
>gi|169343702|ref|ZP_02864701.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str.
JGS1495]
gi|169298262|gb|EDS80352.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str.
JGS1495]
Length = 402
Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats.
Identities = 87/357 (24%), Positives = 159/357 (44%), Gaps = 22/357 (6%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++++ I +++ S + AE + L++ +TG +I E + +
Sbjct: 1 MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K +
Sbjct: 61 PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND AVA+AE L +E FV+ MN ++ LG+ T F N G+ GH +TA D++I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAEELGMKNTTFKNCTGLPIEGHLSTAYDISI 180
Query: 173 LSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+S + + I + N N V F G DG+KTGFT + + I
Sbjct: 181 MSRELLKHPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYCI 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQN 284
A+A + +++VI+GA RN+ ++ L++ GF ++ I+ Q
Sbjct: 241 SATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDIEVEQIPMSQTG 300
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMK------EAKDKESHFIDFEKITLLKNKITK 335
+ +++ + ++ + K + K KE I + + L + K
Sbjct: 301 DKFIIGKAKDDLTLVCPKGMSDKIEKKVILDESKKKIKEFDTIGYCEYYLDGELLGK 357
>gi|168215435|ref|ZP_02641060.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC
8239]
gi|182382426|gb|EDT79905.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC
8239]
Length = 402
Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 87/357 (24%), Positives = 158/357 (44%), Gaps = 22/357 (6%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++++ I +++ S + AE + L++ +TG +I E + +
Sbjct: 1 MKKYIRKIAAFAIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K +
Sbjct: 61 PASVTKIMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND AVA+AE L +E FV+ MN +K LG+ T F N G+ GH +TA D++I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAKELGMKNTTFKNCTGLPIEGHLSTAYDISI 180
Query: 173 LSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+S + + I + N N V F G DG+KTGFT + + I
Sbjct: 181 MSRELLKHPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYCI 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQN 284
A+A + +++VI+GA RN+ ++ L++ GF ++ + Q
Sbjct: 241 SATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEVEQIPMSQTG 300
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMK------EAKDKESHFIDFEKITLLKNKITK 335
+ +++ + ++ + K + K KE I + + L + K
Sbjct: 301 DKFIIGKAKDDLTLVCPKGMSDKIEKKVVLYESKKKIKEFDTIGYCEYYLDGELLGK 357
>gi|256003606|ref|ZP_05428595.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
DSM 2360]
gi|255992397|gb|EEU02490.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
DSM 2360]
gi|316939774|gb|ADU73808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
DSM 1313]
Length = 396
Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 79/315 (25%), Positives = 134/315 (42%), Gaps = 11/315 (3%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ ++D +TG V+ E AS TK+MTA V L +
Sbjct: 33 KPPRIEAKAAIVIDADTGRVLYEKDAYSRRAIASTTKIMTAIVAIEN-----GNLDDKVK 87
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+S A+ S K G +TL L ++++S ND A+A+AE + T + FV+ MN+
Sbjct: 88 VSSRAASIWGSTIKLKPGEELTLKELLYGMMLRSGNDAALAVAEHVGGTVENFVKMMNDK 147
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
++ LGL T F HG+ GHY+TA ++A+L+ + P + K I +
Sbjct: 148 ARELGLKNTAFKTPHGLDVEGHYSTAYELAMLTRYALQN-PVFAQIVATKSTTITNRSLY 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
TN + + GADG+KTG+T +G +V SA + +I+V+L R+ R + S ++L
Sbjct: 207 TTNEMLSLYPGADGVKTGYTGKAGRCLVTSATRDGFKIISVVLNCSSRSKRAESSKTILD 266
Query: 262 MGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
F N + + + Y+ + E + + + D E
Sbjct: 267 YAFNNYKPYELLRANQELGRVKVYKGKKDSVPVVAVESIKMPLSREEKEKLRTELTLD-E 325
Query: 318 SHFIDFEKITLLKNK 332
+ K +
Sbjct: 326 TIKAPVYKGVEVGKI 340
>gi|259415214|ref|ZP_05739136.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp.
TrichCH4B]
gi|259349124|gb|EEW60878.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp.
TrichCH4B]
Length = 393
Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 86/348 (24%), Positives = 149/348 (42%), Gaps = 18/348 (5%)
Query: 3 QFLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+F+ L+ ++ S A K ++D T V+ D P PAS++K
Sbjct: 4 RFISATCFGALAGLWLASSTTALQAFETKARAAYVVDQGTNTVLLSKNADVPMPPASMSK 63
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMT YV F +++ + + + +S++A Y S + +++ L+ +IV S ND
Sbjct: 64 LMTLYVAFEAVRDGRLTMDERLPVSEHAMSYKGSTMFLDTTDRVRVEDLLRGIIVLSGND 123
Query: 119 IAVAIAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
IAE+L E F ++M ++ LG+S + FMN++G GH + RD+AIL+
Sbjct: 124 ACAVIAEALSPDGTEAGFARYMTRRARELGMSESTFMNSNGWPDQGHEMSVRDLAILAEH 183
Query: 177 IKTDFPQYMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ DFP++ F + N N + +GADG+KTG T +G+ +V SA
Sbjct: 184 LIEDFPEFYPMFSEQEFAFDGRAPSNTRNRNPLLQLDIGADGLKTGHTQEAGYGLVGSAK 243
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE----- 288
QGD+ +I VI G R + S ++++ F T + I + +
Sbjct: 244 QGDRRVIFVISGMNSTPERAEESEAIVNWAFRQFTKKTIAREGIAIEQAEVWMGDSPTVG 303
Query: 289 -VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
VP + E+ ++ + L + K
Sbjct: 304 LVPAENLEILLPALSGDAIKAEVVYT---GPVTAPIQAGQQLAELVVK 348
>gi|262376081|ref|ZP_06069312.1| penicillin-binding protein 6 [Acinetobacter lwoffii SH145]
gi|262309175|gb|EEY90307.1| penicillin-binding protein 6 [Acinetobacter lwoffii SH145]
Length = 382
Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 82/339 (24%), Positives = 142/339 (41%), Gaps = 12/339 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + S LS Y L+D TG ++A + PAS+TK+MT+Y
Sbjct: 7 LAALLLVPSFSFAATVLSAPPELNNKSYVLMDYETGQLLASKNENEKLAPASMTKMMTSY 66
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ L + + ++++A S T T L+ +I++S ND +
Sbjct: 67 IIEQKLLSGELTEDEQVRMNESAWCRGSSAESCMYVPLNGTATALEMLRGIIIQSGNDAS 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + E F MN +K +G++ T F+N+ G+ GHY+TA+DMA L+ I D
Sbjct: 127 KAMAEHIAGNEGTFAHMMNQEAKRIGMTNTSFVNSTGMPAEGHYSTAKDMATLAQHIIKD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+Y + K G K N N + T DG+KTG T +G+ + S+ +G LI
Sbjct: 187 SSKYYPIYAEKEFTFNGIKQGNRNALLYTDPSVDGLKTGHTDEAGYCLTTSSKRGPTRLI 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISE-- 294
+VI GA R + LL+ G+ N + + ++E
Sbjct: 247 SVIFGAPTMQERATQTRELLAWGYANFETKNVQPAKQVLAKAKVWFGKEDEVQIGLAENF 306
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
V + + TQ+ + + ++ +
Sbjct: 307 NVTMPKGQANAIKTQLVV---QPKLTAPLQPGQVVGKYV 342
>gi|114771313|ref|ZP_01448733.1| D-alanyl-D-alanine carboxypeptidase family protein [alpha
proteobacterium HTCC2255]
gi|114548238|gb|EAU51125.1| D-alanyl-D-alanine carboxypeptidase family protein [alpha
proteobacterium HTCC2255]
Length = 481
Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 100/322 (31%), Positives = 156/322 (48%), Gaps = 10/322 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ + ++ + ++D TG V+ D +PASLTK+MT Y+
Sbjct: 9 FFLVVVLIFTGVSAYAAP-----YAALVMDARTGEVLHSRNADTRLHPASLTKMMTLYLA 63
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F ++ L + +S+NA+ PPS + G + + + ++ VKSAND A A+ E
Sbjct: 64 FKAVESGHLSLDEKVKVSRNAASEPPSKLGLRTGMRVKVRHLIRAAAVKSANDAATALGE 123
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
++ +E KF M +K LG+ T F NAHG+ GH +TARDM+IL + DFP Y
Sbjct: 124 AIAGSEAKFTALMTAQAKALGMKRTTFKNAHGLTARGHLSTARDMSILGRHLMYDFPDYY 183
Query: 186 HYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ F + + + PNTN + + GADG+KTG+T A+GFN+V+SA +G++ +IA +
Sbjct: 184 NLFSRRNTDAGLRTVPNTNRRLLANYKGADGIKTGYTNAAGFNLVSSAQRGNKRIIATVF 243
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
G +RN A LL MGF R N I + N + V I + +
Sbjct: 244 GGRTWRSRNARVAELLDMGFNRTPKRYTSNAIPARPSRGNQLDSVALILPGNVSIK---- 299
Query: 305 NYNTQMKEAKDKESHFIDFEKI 326
+ K K D + I
Sbjct: 300 SPRIISSSPKPKFRPNFDKKTI 321
>gi|22125078|ref|NP_668501.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis KIM
10]
gi|45440942|ref|NP_992481.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
biovar Microtus str. 91001]
gi|108808491|ref|YP_652407.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
Antiqua]
gi|108811250|ref|YP_647017.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
Nepal516]
gi|145599915|ref|YP_001163991.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
Pestoides F]
gi|149365498|ref|ZP_01887533.1| putative penicillin-binding protein 5 [Yersinia pestis CA88-4125]
gi|162419741|ref|YP_001606339.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
Angola]
gi|165937675|ref|ZP_02226237.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008297|ref|ZP_02229195.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|167398703|ref|ZP_02304227.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167423578|ref|ZP_02315331.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468426|ref|ZP_02333130.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis FV-1]
gi|170025245|ref|YP_001721750.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
pseudotuberculosis YPIII]
gi|186894472|ref|YP_001871584.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
pseudotuberculosis PB1/+]
gi|218929682|ref|YP_002347557.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia pestis
CO92]
gi|229838147|ref|ZP_04458306.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229895938|ref|ZP_04511108.1| putative penicillin-binding protein 5 [Yersinia pestis Pestoides A]
gi|229898742|ref|ZP_04513887.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
Orientalis str. India 195]
gi|229901487|ref|ZP_04516609.1| putative penicillin-binding protein 5 [Yersinia pestis Nepal516]
gi|270489672|ref|ZP_06206746.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27]
gi|294504405|ref|YP_003568467.1| putative penicillin-binding protein 5 [Yersinia pestis Z176003]
gi|21957931|gb|AAM84752.1|AE013720_16 D-alanyl-D-alanine carboxypeptidase, fraction A [Yersinia pestis
KIM 10]
gi|45435801|gb|AAS61358.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
Microtus str. 91001]
gi|108774898|gb|ABG17417.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Yersinia pestis Nepal516]
gi|108780404|gb|ABG14462.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Yersinia pestis Antiqua]
gi|115348293|emb|CAL21224.1| putative penicillin-binding protein 5 [Yersinia pestis CO92]
gi|145211611|gb|ABP41018.1| penicillin-binding protein 5 [Yersinia pestis Pestoides F]
gi|149291911|gb|EDM41985.1| putative penicillin-binding protein 5 [Yersinia pestis CA88-4125]
gi|162352556|gb|ABX86504.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Angola]
gi|165914425|gb|EDR33040.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Orientalis str. IP275]
gi|165992679|gb|EDR44980.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|167051207|gb|EDR62615.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167057748|gb|EDR67494.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169751779|gb|ACA69297.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia
pseudotuberculosis YPIII]
gi|186697498|gb|ACC88127.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
pseudotuberculosis PB1/+]
gi|229681416|gb|EEO77510.1| putative penicillin-binding protein 5 [Yersinia pestis Nepal516]
gi|229688290|gb|EEO80361.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
Orientalis str. India 195]
gi|229694513|gb|EEO84560.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700861|gb|EEO88890.1| putative penicillin-binding protein 5 [Yersinia pestis Pestoides A]
gi|262362606|gb|ACY59327.1| putative penicillin-binding protein 5 [Yersinia pestis D106004]
gi|270338176|gb|EFA48953.1| serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis KIM D27]
gi|294354864|gb|ADE65205.1| putative penicillin-binding protein 5 [Yersinia pestis Z176003]
gi|320016196|gb|ADV99767.1| putative penicillin-binding protein 5 [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 400
Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 88/330 (26%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 29 VNLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGK 88
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G + + + + ++S ND VA+A+ +
Sbjct: 89 IGAEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 148
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN K LGL THF HG+ G +++ARDMA++ + D P
Sbjct: 149 AGSQDSFVNLMNNYVKALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAI 208
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA G LI+V+LG
Sbjct: 209 YKEKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGG 268
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++ T
Sbjct: 269 HTFKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDSDRVQLGVDKDAYLTIPR 328
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + K ++
Sbjct: 329 GRMKDLKASYVLNTPEIHAPLAKNQVVGTI 358
>gi|307266908|ref|ZP_07548427.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|306918065|gb|EFN48320.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 421
Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 90/356 (25%), Positives = 159/356 (44%), Gaps = 26/356 (7%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ + + I +A ++ I+ + P L+D TG V+ + PAS
Sbjct: 1 MKKIIACLLTLFILVAQITPIYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK++TA + L +T S N ++ ++ G +TL+ L L+++S
Sbjct: 61 TTKILTAIIAIEK-----GNLNDIVTASDNVTKIDGNSIFLSPGEQLTLEQLLYALLLES 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+AIAE + + + F + MN +K +G +HF+N +G+ HY+T DMA+++
Sbjct: 116 ANDAAIAIAEHIGGSIENFAKMMNEKAKEIGAYDSHFVNPNGLPDENHYSTPYDMALIAR 175
Query: 176 RIKTDFP--------QYMHYFQIKGLEIKGKKYPNT--NWAVGTFLGADGMKTGFTCASG 225
+ Y K +++ N + + GADG+KTG+T A+G
Sbjct: 176 YAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFHYEGADGVKTGYTVAAG 235
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ--Q 283
+VASA + LI+VI+G N + LL GF N T KK Y
Sbjct: 236 QVLVASATRDGHRLISVIMGDQGTNI-WTDTIKLLDYGFQNFTLVKKTEKGEVVTYIDLG 294
Query: 284 NLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++P I++E + + + TQ+ K+ + + + +K + +K
Sbjct: 295 KSHFKLPLIAKEDFYYEVPKGQENSIETQIILNKNINAPINKGDTLGYIKYTLNEK 350
>gi|283784410|ref|YP_003364275.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
[Citrobacter rodentium ICC168]
gi|282947864|emb|CBG87425.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
[Citrobacter rodentium ICC168]
Length = 403
Score = 197 bits (499), Expect = 2e-48, Method: Composition-based stats.
Identities = 85/330 (25%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K
Sbjct: 32 LNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
T +TI +A K G + + ++ + ++S ND VA+A+
Sbjct: 92 FKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFA 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN+ LGL THF HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDAFVGLMNSYVTALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSV 211
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K G + N N + DG+KTG T +G+N+VASA +G LI+ ++G
Sbjct: 212 YKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTAKAGYNLVASATEGQMRLISAVMGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 272 RTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGDTDRASLGVDKDVYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +K ++
Sbjct: 332 GRMKDLKASYLLNTTELHAPLQKNQVVGTI 361
>gi|146343356|ref|YP_001208404.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
ORS278]
gi|146196162|emb|CAL80189.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
ORS278]
Length = 476
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 103/323 (31%), Positives = 170/323 (52%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+R + +++ + L++ +TG V+ +PW PAS+TKLM
Sbjct: 4 LRLLFRYSPLKIIAVAAALMLAPRMAHAEALLLVEADTGKVLEAQNATYPWYPASVTKLM 63
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV +K+ KA L T +T+S A+ PS ++ G+ +T+DNALK+++VKSAND+A
Sbjct: 64 TAYVTLKAVKDGKASLDTLLTVSPTAASQSPSKMGYRPGTQVTVDNALKMMLVKSANDMA 123
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
V +AE + + F MN T++ LG++ T ++N +G+ G T+ARD+AIL+ I D
Sbjct: 124 VVLAEGIGGSIDGFSIMMNETAQRLGMTQTSYVNPNGLPADGQITSARDLAILARAIIRD 183
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P+Y ++ I + + N N +G + GADG KTGF CASG+N+VASA + + LI
Sbjct: 184 LPEYEYFVHIPSIRYGRRVVQNFNRLIGRYPGADGFKTGFICASGYNLVASATRNGKRLI 243
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AV+LGA R + +L GF + + PN+ +++C+ +
Sbjct: 244 AVVLGASSGQMRAVRAIQMLDRGFNTNQLSWLKAPLGNVEQLVPVDATPPNLRDDMCSGR 303
Query: 301 KEIINYNTQMKEAKDKESHFIDF 323
+ + +EA ++
Sbjct: 304 RHRPASDDDGEEASNEGETTTGG 326
>gi|167745582|ref|ZP_02417709.1| hypothetical protein ANACAC_00273 [Anaerostipes caccae DSM 14662]
gi|317472823|ref|ZP_07932134.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
gi|167654894|gb|EDR99023.1| hypothetical protein ANACAC_00273 [Anaerostipes caccae DSM 14662]
gi|316899742|gb|EFV21745.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
Length = 394
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 89/365 (24%), Positives = 164/365 (44%), Gaps = 33/365 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA---------------ETNKLPYYTLLDTNTGHVIAEN 45
M++ + I +L + A +++ +G ++ +
Sbjct: 1 MKKAAIFILSLLLCISSGTMVCATEPETLLTVAQDGEGLDLTAKSAVVMEAGSGTILYQK 60
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D PAS+TK+M+ ++F L + + +T+S++A+ S + G + T+D
Sbjct: 61 DKDMKLPPASVTKVMSLLLIFEELDKGNLKYSDKVTVSEHAASMGGSQVFLEPGESQTVD 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
LK +++ SAND V++AE + +E FV+ MN +K LG+ T F N+ G+ GH T
Sbjct: 121 TMLKCIVISSANDAVVSMAEHIAGSEGAFVKRMNEKAKQLGMKNTTFKNSCGLDIKGHET 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMK 217
+A D+A++S + T P Y +I + + NTN + + G G+K
Sbjct: 181 SAYDIALMSRELTTKHPDIFKYTKIWMDKFTHETKKGTKEFGLSNTNKLLKQYNGCTGLK 240
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK------TDRK 271
TG T + F + A+A + SLIAV++ + D TR K +++LL GF + T K
Sbjct: 241 TGSTSTAKFCLSATATRNGVSLIAVVMASDDSKTRVKDASALLDYGFSHCQVMEDHTKAK 300
Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
I I ++ + +I ++ + + Q++ + K +K +L
Sbjct: 301 DIGKIAVTKGKKETVSYQEDIPAKIVLVKGSKNDVKKQIRIGQVK----APVKKGQVLGY 356
Query: 332 KITKK 336
I K+
Sbjct: 357 IIYKR 361
>gi|260434140|ref|ZP_05788111.1| beta-lactamase [Silicibacter lacuscaerulensis ITI-1157]
gi|260417968|gb|EEX11227.1| beta-lactamase [Silicibacter lacuscaerulensis ITI-1157]
Length = 388
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 88/320 (27%), Positives = 148/320 (46%), Gaps = 8/320 (2%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D TG V+ D P PAS++KLMT YV F L++ + L + +S
Sbjct: 24 FDTSARAAYVMDQTTGTVLLSKNADQPLPPASMSKLMTLYVAFEALRDGRLTLDEKLPVS 83
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT--EKKFVQHMNNT 141
++A Y S + +++ L+ +IV S ND V IAE+L E F ++M
Sbjct: 84 EHAMSYGGSTMFLNTQDRVRVEDLLRGIIVLSGNDACVVIAEALSPDGTEAGFARYMTQR 143
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GK 198
+K +G++ + F N++G GH + +D+AIL+ R+ TDFP+Y F + E
Sbjct: 144 AKQMGMNNSTFANSNGWPAAGHMMSVKDLAILADRLITDFPEYYPLFAEETFEFDGRAPS 203
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
N N + +GADG+KTG T +G+ +V SA QGD+ +I V+ G + R + + +
Sbjct: 204 NVNNRNPLLKLDIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFVLSGLENVARRAEEAEA 263
Query: 259 LLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
+++ F N +R + I + V + E T ++N E
Sbjct: 264 VVNWSFRNFVERTVASADTPIAQAKVWMGAQKTVGLVPEGDLTLLFPVLNDQNVPAEVVY 323
Query: 316 KESHFIDFEKITLLKNKITK 335
+ +K L + K
Sbjct: 324 EGPINAPIQKGQKLAELVVK 343
>gi|326389891|ref|ZP_08211455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
ethanolicus JW 200]
gi|325994159|gb|EGD52587.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacter
ethanolicus JW 200]
Length = 421
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 90/356 (25%), Positives = 159/356 (44%), Gaps = 26/356 (7%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ + + I +A ++ I+ + P L+D TG V+ + PAS
Sbjct: 1 MKKIIACLLTLFILVAQITPIYANVPPPPEIVGPTAVLMDFTTGQVLYDKNMHKRMYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK++TA + L +T S N ++ ++ G +TL+ L L+++S
Sbjct: 61 TTKILTAIIAIEK-----GNLNDIVTASDNVTKIDGNSIFLSPGEQLTLEQLLYALLLES 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+AIAE + + + F + MN +K +G +HF+N +G+ HY+T DMA+++
Sbjct: 116 ANDAAIAIAEHIGGSIENFAKMMNEKAKEIGAYDSHFVNPNGLPDENHYSTPYDMALIAR 175
Query: 176 RIKTDFP--------QYMHYFQIKGLEIKGKKYPNT--NWAVGTFLGADGMKTGFTCASG 225
+ Y K +++ N + + GADG+KTG+T A+G
Sbjct: 176 YAMQNPEFRKIVTTIHYQIPPTNKFDKVRDLWLSNRLIKPSSFHYEGADGVKTGYTVAAG 235
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ--Q 283
+VASA + LI+VI+G N + LL GF N T KK Y
Sbjct: 236 QVLVASATRDGHRLISVIMGDQGTNI-WTDTIKLLDYGFQNFTLVKKTEKGEVVTYIDLG 294
Query: 284 NLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++P I++E + + + TQ+ K+ + + + +K + +K
Sbjct: 295 KSHFKLPLIAKEDFYYEVPKGQENSIETQIILNKNINAPINKGDTLGYIKYTLNEK 350
>gi|300717466|ref|YP_003742269.1| penicillin-binding protein 6B (D-alanyl-D-alanine carboxypeptidase)
[Erwinia billingiae Eb661]
gi|299063302|emb|CAX60422.1| Penicillin-binding protein 6B (D-alanyl-D-alanine carboxypeptidase)
[Erwinia billingiae Eb661]
Length = 379
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 93/342 (27%), Positives = 150/342 (43%), Gaps = 15/342 (4%)
Query: 6 VIIAMAMLS----NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+++A A L+ N F + + L+D TG V+ + D NPASLTKLMT
Sbjct: 1 MVLAFASLAHADDNPLAFPMTPPSVDAASWVLMDATTGQVLTQGNADERRNPASLTKLMT 60
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKS 115
YVV + K+ +TI ++A K G +++ + + +I+ S
Sbjct: 61 GYVVDRAIDAKRITRDDMVTIGQDAWGAGNPVFKGSSLMFLKPGEKVSVRDLSRGVIIDS 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VA+A+ + ++ FV MN LGL+ THF HG+ G +TTA D+A LS
Sbjct: 121 GNDACVALADYVAGSQSAFVDQMNQYVTKLGLTNTHFETVHGLDAPGQFTTAGDLAKLSR 180
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
I + P + + K L G N N L DG+KTG T ++GFNI+AS++
Sbjct: 181 AIISGEPDFYQMYGEKSLTWNGITQQNRNGLLWDKTLHVDGLKTGHTESAGFNIIASSVD 240
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVP 290
G + LIAVI+G R + + LL+ G N + + ++ + N
Sbjct: 241 GQRRLIAVIMGGKSTKGREEQARKLLTWGQNNFDTVQLFHAGKEIGHENVWYGNPHQVSV 300
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++V + K D++ + + +
Sbjct: 301 GSDKDVYLALPRDEVKKIKAKYVIDRKDLEAPLKAHEQVGSI 342
>gi|217976731|ref|YP_002360878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
BL2]
gi|217502107|gb|ACK49516.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
BL2]
Length = 407
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 87/341 (25%), Positives = 142/341 (41%), Gaps = 11/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+R + I + P + A +P+ L+D TG V+ E D P PAS K+M
Sbjct: 11 LRLMGLAILAGVCFGSGPASAQAIQTSVPHAILIDVETGSVLFEKDADAPVTPASTVKVM 70
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKS 115
TA VVF L + + L TIS++A S+ S + +++ ++ L++ S
Sbjct: 71 TADVVFGELAQGRIKLDDEFTISEHAWRTGGAPARASSMFAALNSRVRVEDLIRGLVIDS 130
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND A+A+AE + +E F M LGL+ + F N G T R+M IL+
Sbjct: 131 GNDAAIALAEGVAGSETAFAGLMMKRGHELGLTRSVFTNPWGKDDPEQKVTPREMTILAA 190
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ +P Y YF K + N N + +GADG+KTG ASGF +V SA+Q
Sbjct: 191 HVIATYPDYYKYFGEKEFTWNKIRQTNRNPLLTMDIGADGLKTGNIDASGFGLVGSAVQN 250
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE------V 289
Q LI + GA R + + L F + + + + Y + V
Sbjct: 251 GQRLILALYGATTAKERAEEARKLFLWAFRSFSSKSLFSADETIGYAKVYGGASFEAPLV 310
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + ++ + +++ LK
Sbjct: 311 AGREVKALVPRVGGEKFTGRIVYNGPLIAPVEAGKEVARLK 351
>gi|258515293|ref|YP_003191515.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
acetoxidans DSM 771]
gi|257778998|gb|ACV62892.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
acetoxidans DSM 771]
Length = 392
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 84/345 (24%), Positives = 139/345 (40%), Gaps = 12/345 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAE--------TNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
F++I A+ ++S + L++ NTG ++ PD AS
Sbjct: 12 FVIISAICIVSKPGTIQAKPAVQNNEAGLETTAEAAILMEANTGKILWSKQPDKELPMAS 71
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MT + + K LT IT S+NA S + G ++++ L + V S
Sbjct: 72 VTKIMTMLLAVEAVDAGKVKLTDKITTSENAWNMGGSQIYLEPGEELSMEEMLISIAVGS 131
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND VA+AE L +E+ FV MN +K LGL+ T+F N +G+ HYT+A DMA++
Sbjct: 132 ANDACVAVAEHLGGSEEAFVGMMNKKAKELGLAHTNFANTNGLPVENHYTSAHDMAMIIK 191
Query: 176 RIKTDFPQYMHYFQIKGL-EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ NTN + + G KTG+T + + + ++ +
Sbjct: 192 EALRHPLFVKVSSIYRYDLRGGDFVLWNTNKLLKWYEGTVAGKTGWTNEAKYCLASAVER 251
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPN 291
LIAV+LG + + + S L + GF N IK + V
Sbjct: 252 KGLRLIAVVLGTAEPKSHFRESMKLYNYGFARYQAVNLENQGIKVKTVNVGKGTDRVVDI 311
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ E + K+ + +K + I K
Sbjct: 312 VTAEKVSLVVPKGQDKGYEKKIMAPDLINAPVQKGDKVGKYIVAK 356
>gi|254360903|ref|ZP_04977049.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
haemolytica PHL213]
gi|153092382|gb|EDN73445.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
haemolytica PHL213]
Length = 392
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 99/353 (28%), Positives = 160/353 (45%), Gaps = 18/353 (5%)
Query: 1 MRQFLV----IIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ LV ++ A+ S + F A Y L+D N+G V+ PD
Sbjct: 1 MKKTLVKAMSVVGFAVSSIAYADLNTNFNLSAPQINAQTYILMDYNSGEVLVSLNPDQRQ 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNAL 108
PASLTK+MT+YVV LK K + + +++N+ S +++ +
Sbjct: 61 YPASLTKMMTSYVVGEALKSGKVQNSDMVIVTENSWAQKFPGSSLMFLDLNSKVSVGELM 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
K LI+ S ND +VA+AE + ++ F+ MN ++ GL THF HG+ Y++AR
Sbjct: 121 KGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLKNTHFTTVHGLDDPEQYSSAR 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-WAVGTFLGADGMKTGFTCASGF 226
DMAI+ I D P+ + K + KK PN N + DGMKTG T +G+
Sbjct: 181 DMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNGLLWDKTIQVDGMKTGHTDKAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQ 282
N+VASAI + LI+V++G R S LL GF N K I + Y
Sbjct: 241 NLVASAINPNTRLISVVMGVPTYKGREVESKKLLQWGFANFETIKSIPAAQSVAEQSVYY 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ ++ T + + + + + +K++ K ++ I +
Sbjct: 301 GEVNKVQLGSVQDSFVTIPKGRSADLKARYELEKKNLEAPLAKGQVVGKMIYQ 353
>gi|295096612|emb|CBK85702.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 403
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 83/330 (25%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K
Sbjct: 32 LNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
T +TI +A K G + + ++ + ++S ND VA+A+
Sbjct: 92 FKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFA 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN+ LGL +HF HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDAFVGLMNSYVSALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYSI 211
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K G + N N + DG+KTG T +G+N+VASA +G LI+ ++G
Sbjct: 212 YKEKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + +++ T
Sbjct: 272 RTFKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPVWFGDNDRASLGVDKDLYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +K ++
Sbjct: 332 GRMKDLKASYVLNTTELHAPLQKNQVVGTI 361
>gi|88810567|ref|ZP_01125824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrococcus mobilis
Nb-231]
gi|88792197|gb|EAR23307.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrococcus mobilis
Nb-231]
Length = 340
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 93/309 (30%), Positives = 148/309 (47%), Gaps = 6/309 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D ++ V+ E D +PASLTK+MTAYVVFS LK K + +T+S+ A P S
Sbjct: 1 MDHDSNQVLVEVNVDKRHDPASLTKMMTAYVVFSELKSKHIAIDDQVTVSEKAWREPGSR 60
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ G + + L+ +IV+S ND +VA+AE + E F Q MN ++ LG+ TH++
Sbjct: 61 MFIEVGDKVPVKALLQGMIVQSGNDASVALAEHVAGNESTFAQVMNQYARTLGMEHTHYV 120
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
NA G+ HYTTA D A+LS + DFPQY F K G + N N +
Sbjct: 121 NATGLPDPKHYTTAHDTALLSQALMRDFPQYHSMFAEKKYTYNGIEQYNRNKLLWRDPSV 180
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
DG+KTG T A+G+ + +SA + + LI+V++GA R + +LL+ GF
Sbjct: 181 DGLKTGHTEAAGYCLASSAERDNMRLISVVMGAGSEEARLSDTQALLNYGFRFFKTHLLY 240
Query: 274 NYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
++ L ++ + V + + N M + E+
Sbjct: 241 QAGQSLTKARVWKGALEMLPLGLTHDLFVTIPEHQYDNLKASMNVDNLLMAPVTRGEQYG 300
Query: 328 LLKNKITKK 336
+ ++ +
Sbjct: 301 KVNVQLNGQ 309
>gi|261493869|ref|ZP_05990381.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
haemolytica serotype A2 str. BOVINE]
gi|261495135|ref|ZP_05991599.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261309205|gb|EEY10444.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261310471|gb|EEY11662.1| S11 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
haemolytica serotype A2 str. BOVINE]
Length = 392
Score = 197 bits (499), Expect = 3e-48, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 161/353 (45%), Gaps = 18/353 (5%)
Query: 1 MRQFLV----IIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ LV ++ A+ S + F A Y L+D N+G V+ PD
Sbjct: 1 MKKTLVKAMSVVGFAVSSIAYADLNTNFNLSAPQINAQTYILMDYNSGEVLVSLNPDQRQ 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNAL 108
PASLTK+MT+YVV LK K + +T+++N+ S +++ +
Sbjct: 61 YPASLTKMMTSYVVGEALKSGKVQNSDMVTVTENSWAQKFPGSSLMFLDLNSKVSVGELM 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
K LI+ S ND +VA+AE + ++ F+ MN ++ GL THF HG+ Y++AR
Sbjct: 121 KGLIIVSGNDASVALAEHVSGSQAAFINEMNKYAQQFGLKNTHFTTVHGLDDPEQYSSAR 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTN-WAVGTFLGADGMKTGFTCASGF 226
DMAI+ I D P+ + K + KK PN N + DGMKTG T +G+
Sbjct: 181 DMAIIGSHIIRDQPEEYKIYAEKEFQYNIKKPQPNRNGLLWDKTIQVDGMKTGHTDKAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQ 282
N+VASAI + LI+V++G R S LL GF N K I + Y
Sbjct: 241 NLVASAINPNTRLISVVMGVPTYKGREVESKKLLQWGFANFETIKSIPAAQSVAEQSVYY 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ ++ T + + + + + +K++ K ++ I +
Sbjct: 301 GEVNKVQLGSVQDSFVTIPKGRSADLKARYELEKKNLEAPLAKGQVVGKMIYQ 353
>gi|309389989|gb|ADO77869.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halanaerobium praevalens
DSM 2228]
Length = 378
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 155/343 (45%), Gaps = 14/343 (4%)
Query: 1 MRQ----FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ ++++I + M+ I P A K L++ TG V+ E D PAS+
Sbjct: 1 MKKNNVLYILLITIFMVLTILPTT-FAFDIKPESAFLIEAETGQVLFEKNADRKLPPASM 59
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+M + L+E LT +TIS+ A S + + L+ +K + + S
Sbjct: 60 TKIMPLLITMEKLEEGSISLTDQVTISRYAESMGGSQIFLAANTQVELEKLIKAVTIASG 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND +VAI E + T F+ MN ++ LG+ +T+F N+ G+ HY+TA D++I++
Sbjct: 120 NDASVAIGEYIAGTYSNFIAMMNERAEELGMDSTNFSNSTGLPTTNHYSTAHDISIMARE 179
Query: 177 IKTDFPQYMH---YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + + L + NTN + + DG+KTG T +G+ + A+A
Sbjct: 180 LVKHSQVLHWASIWTETIDLPNRKAMLVNTNSLINKYPSMDGLKTGHTQEAGYCLTATAK 239
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEV 289
+GD LI+V++ R + + LL GF + + RK N + + V
Sbjct: 240 KGDVRLISVVMQGETLTAREEATTRLLDYGFNSFSKRKIANSGEQIQNIEVANSANKVAV 299
Query: 290 PNISEEVCTTQKEII--NYNTQMKEAKDKESHFIDFEKITLLK 330
I+E++ ++ + +++ + E I LK
Sbjct: 300 GEIAEDLSIMVQKGKENEISQKVEVNDSLTAPIAKGETIGHLK 342
>gi|270263700|ref|ZP_06191969.1| hypothetical protein SOD_e03250 [Serratia odorifera 4Rx13]
gi|270042584|gb|EFA15679.1| hypothetical protein SOD_e03250 [Serratia odorifera 4Rx13]
Length = 428
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 87/330 (26%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE D +PASLTK+MT+YV+ LK K
Sbjct: 57 VNIKTMIPGVPQIDAEAYVLIDYNSGKVLAEMNADARRDPASLTKMMTSYVIGQALKAGK 116
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ ++A K G + + + + ++S ND VA+A+ +
Sbjct: 117 IGPEDMVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 176
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN LGL THF HG+ G Y++ARDMA++ + D P
Sbjct: 177 AGSQDAFVNLMNTYVSKLGLQNTHFQTVHGLDAQGQYSSARDMALIGQALIRDVPDEYAI 236
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA +G LI+ +LG
Sbjct: 237 YKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATEGQMRLISAVLGG 296
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 297 RTYKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDSDRVELGVDKDVYLTIPR 356
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + K ++ +
Sbjct: 357 GRMKDLKASYVLNTPEIHAPLAKNQVVGSI 386
>gi|238795411|ref|ZP_04638926.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC
43969]
gi|238720530|gb|EEQ12331.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC
43969]
Length = 383
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 87/328 (26%), Positives = 140/328 (42%), Gaps = 11/328 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 12 VNLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGK 71
Query: 74 AMLTTPITISKNAS------EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A S K G + + + + ++S ND VA+A+ +
Sbjct: 72 IGPEDMVTVGKDAWATGNPEFQGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 131
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN LGL THF HG+ G +++ARDMA++ + D P
Sbjct: 132 AGSQDSFVNLMNNYVNALGLQNTHFKTVHGLDADGQFSSARDMALIGQALIRDVPDEYTI 191
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T ++G+N+VASA G LI+ +LG
Sbjct: 192 YKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATDGQMRLISAVLGG 251
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 252 RTYKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDSDRVQLGVDKDVYLTIPR 311
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + K ++
Sbjct: 312 GRMKDLKASYVLNTPEIHAPLAKNQVVG 339
>gi|310767134|gb|ADP12084.1| D-alanyl-D-alanine carboxypeptidase [Erwinia sp. Ejp617]
Length = 402
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 144/325 (44%), Gaps = 11/325 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ A + L+D ++ V+AE+ D +PASLTK+M++YV+ LK K
Sbjct: 32 QMPAAPQIDAKAWILMDYSSSKVLAESNADLRLDPASLTKMMSSYVIGQALKAGKIGKDD 91
Query: 79 PITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+T+ K+A K G + + K ++++S ND ++A+A+ + ++
Sbjct: 92 LVTVGKDAWATGNPVLKGSSLMFLKPGDHIAVSELNKGIVIQSGNDASIALADYVAGSQD 151
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
FV MNN + LGL THF HG+ G Y+TARDMA++ + D P + K
Sbjct: 152 AFVGLMNNYVQALGLKNTHFKTVHGLDASGQYSTARDMALIGQALIRDVPDEYALHKEKV 211
Query: 193 LEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ N N T L DG+KTG T +G N+VASA+ GD+ +I+V+LGA
Sbjct: 212 FTFNNIRQYNRNRLLWSTSLQVDGIKTGHTSGAGNNLVASAVDGDRRMISVVLGAATDAI 271
Query: 252 RNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R + S LL+ G N + + + + ++++ T N
Sbjct: 272 RFRESEKLLTWGLRNFETVTPVKAGKAFVTQRVWYGDRQEVNLGVAQDAAITLPHGQMKN 331
Query: 308 TQMKEAKDKESHFIDFEKITLLKNK 332
+ + K ++
Sbjct: 332 LKASFTLSQPQLTAPLAKNQVVGTL 356
>gi|99078561|ref|YP_611819.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
gi|99035699|gb|ABF62557.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
Length = 393
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 82/335 (24%), Positives = 142/335 (42%), Gaps = 8/335 (2%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + A K ++D T V+ D P PAS++KLMT YV F
Sbjct: 13 VLAGLWIASSTTAVQAFETKARAAYVVDQGTNTVLLSKNADVPMPPASMSKLMTLYVAFE 72
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+++ + + + +S++A Y S + +++ L+ +IV S ND IAE+L
Sbjct: 73 AVRDGRLTMDERLPVSEHAMSYKGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAVIAEAL 132
Query: 128 CKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
E F ++M ++ LG++ + FMN++G GH + RD+AIL+ + DFP++
Sbjct: 133 SPDGTEAGFARYMTRRARELGMNDSTFMNSNGWPDDGHRMSVRDLAILAEHLIEDFPEFY 192
Query: 186 HYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
F + E N N + +GADG+KTG T +G+ +V SA QGD+ +I V
Sbjct: 193 PMFAEQVFEFDGRAPSNTRNRNPLLQLDIGADGLKTGHTQEAGYGLVGSAKQGDRRVIFV 252
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEEVCTT 299
I G R + S ++++ F T + + S V + E
Sbjct: 253 ISGLNSTPERAEESEAIVNWSFRQFTKKTIAREGIAVEQAEVWMGDSPTVGLVPAEDLEI 312
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
++ + E + L +
Sbjct: 313 LLPALSDDAVKAEVVYTGPVTAPIQAGQQLAELVV 347
>gi|238753434|ref|ZP_04614797.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC
29473]
gi|238708387|gb|EEQ00742.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC
29473]
Length = 401
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 93/344 (27%), Positives = 155/344 (45%), Gaps = 14/344 (4%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + M + A Y L+D N+G ++ + D +PASLTK+M++YV+
Sbjct: 19 LLLLTMPAVRAADEQPAPPIDAKAYVLMDFNSGKILTQGNADQRLDPASLTKIMSSYVIG 78
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIA 120
+K K +T+ K+A K G + L + K ++++S ND +
Sbjct: 79 QAIKAGKVHPDDMVTVGKDAWATGNPVLRGSSLMFLKPGDQVKLLDLNKGIVIQSGNDAS 138
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+A+ + ++ FV MNN +K LGL THF+ HG+ G Y+TARDMA+L+ + D
Sbjct: 139 IALADYIAGSQDSFVGLMNNYAKALGLDNTHFLTVHGLDAEGQYSTARDMAVLAQALIRD 198
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+ + K + N N T L DG+KTG T +G N+VASA G L
Sbjct: 199 VPEEYALHKEKEFTFNNIRQINRNRLLWNTNLNVDGVKTGHTAGAGHNLVASATDGPMRL 258
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI------S 293
I+V+LGA R S LLS GF I Q+ ++ + +
Sbjct: 259 ISVVLGAPSDRVRFSESEKLLSWGFRFYETVVPIKTDKAFVTQKVWFGDIGQVDLGVAQN 318
Query: 294 EEVCTTQKEIINYNTQMKEAKD-KESHFIDFEKITLLKNKITKK 336
+ + ++ N K + +K+ ++ ++ K
Sbjct: 319 AAITIPKGQMKNLKASYKLDSTELRAPLAKHQKVGVIDFQLNGK 362
>gi|238752594|ref|ZP_04614067.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC
43380]
gi|238709185|gb|EEQ01430.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC
43380]
Length = 383
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 87/328 (26%), Positives = 139/328 (42%), Gaps = 11/328 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 12 VNLKTMIPGVPQIDAEAYVLIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKAGK 71
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G + + + + ++S ND VA+A+ +
Sbjct: 72 IGPEDMVTVGKDAWATGNPEFRGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 131
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN LGL THF HG+ G +++ARDMA++ + D P
Sbjct: 132 AGSQDSFVNLMNNYVNALGLKNTHFKTVHGLDADGQFSSARDMALIGQALIRDVPDEYAI 191
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA G LI+ +LG
Sbjct: 192 YKEKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISTVLGG 251
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 252 HTYKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDSDRVQLGVDKDVYLTIPR 311
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + K ++
Sbjct: 312 GRMKDLKASYTLNTPEIHAPLAKNQVVG 339
>gi|188533505|ref|YP_001907302.1| D-alanyl-D-alanine carboxypeptidase [Erwinia tasmaniensis Et1/99]
gi|188028547|emb|CAO96409.1| Penicillin-binding protein 6B precursor (D-alanyl-D-alanine
carboxypeptidase) [Erwinia tasmaniensis Et1/99]
Length = 383
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 90/346 (26%), Positives = 155/346 (44%), Gaps = 17/346 (4%)
Query: 1 MRQFL---VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M+++L + +++ + L+D TG ++ PD NPASLT
Sbjct: 1 MKKYLPTSFTLLISLYGVAHAAEVTPPVIDAASWVLMDATTGQILTSGQPDERRNPASLT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
KLMT YVV + +K+ +T+ K+A K G +++ + + +
Sbjct: 61 KLMTGYVVDRAIDQKRITRDDVVTVGKDAWAAGNPVFKGSSLMFLKPGEKVSVRDLSRGV 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
I+ S ND VA+A+ + ++ FV MN+ + LGLS THF HG+ G +TTARD+A
Sbjct: 121 IIDSGNDACVALADYVAGSQNNFVSMMNHYVEKLGLSNTHFETVHGLDAPGQFTTARDLA 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVA 230
LS I + P + + K L G N N + DG+KTG T ++GFNI+A
Sbjct: 181 TLSRAIISGEPDFYQMYSEKSLTWNGITQQNRNGLLWDKELHVDGLKTGHTESAGFNIIA 240
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLS 286
S++ G + LIAV++G R + + LL G + + ++ + N
Sbjct: 241 SSLDGQRRLIAVVMGGKSPKGREEQARQLLLWGQRYFDTVQLFHAGKEIGNENVWYGNPH 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF---EKITLL 329
++V T + K ++++ E++ ++
Sbjct: 301 RVALGSDKDVFYTLPRDEVQQVKAKYVIERKNLEAPIQLHEQVGVI 346
>gi|261868788|ref|YP_003256710.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1]
gi|293391084|ref|ZP_06635418.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1]
gi|261414120|gb|ACX83491.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1]
gi|290951618|gb|EFE01737.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 396
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 98/340 (28%), Positives = 151/340 (44%), Gaps = 9/340 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L + AM + F Y L+D N+G V+A PD PASLTK+MT+YV
Sbjct: 18 LAVSLGAMAAEDVQFNIAVPEINAQTYVLMDYNSGAVLASLNPDQRQYPASLTKMMTSYV 77
Query: 65 VFSFLKEKKAMLTTPITI---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
V +K+ K T +TI S S +++ + + +I+ S ND V
Sbjct: 78 VGQAIKQGKIRNTDMVTIGESSWGHKFPGSSKMFLNLNQQVSVADLHRGIIIVSGNDACV 137
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+AE + T FV MN + GL T+F HG+ + Y++ARDMAI+ RI D
Sbjct: 138 AMAEHVSGTVMNFVDTMNKYVEQFGLKNTYFTTVHGLDEDNQYSSARDMAIIGARIIRDL 197
Query: 182 PQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSL 239
P+ + K K PN N + DGMKTG T +G+N+VASAI + L
Sbjct: 198 PEEYKIYAEKDFTFNKIKQPNRNGLLWDKTINVDGMKTGHTDKAGYNLVASAISPNNMRL 257
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE 295
I+V++G R S LL GF N K ++ + Y + SN + ++
Sbjct: 258 ISVVMGVPTYKGREVESKKLLQWGFANFETFKTLDSGKSISEQRVYYGDESNIQLGVLQD 317
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T + + + + +K+ K ++ + +
Sbjct: 318 AFITIPKGKSAELKARYELEKKYLEAPLAKGQVVGKVVYQ 357
>gi|86748470|ref|YP_484966.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris HaA2]
gi|86571498|gb|ABD06055.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris HaA2]
Length = 499
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 106/309 (34%), Positives = 167/309 (54%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ L+ + ++ L++ +TG V+ +PW PAS+TK+MTAYV
Sbjct: 13 LFWITLTALLMLTALPRIASAEALLLVEADTGKVLQAENATYPWYPASVTKIMTAYVTLK 72
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+KE + L + +T+S A+ PS F G+ +T+DNALK+++VKSANDIAV +AE +
Sbjct: 73 AVKEGRLTLDSLLTVSPVAAAQSPSKMGFAPGTLITVDNALKMMMVKSANDIAVVLAEGV 132
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ F MN T++ LG++ TH++N +G+ G T+ARD+AIL+ + D P+Y H+
Sbjct: 133 GGSVDGFSDMMNTTAQRLGMTQTHYVNPNGLPAEGQVTSARDLAILARAVLRDLPEYEHF 192
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
I + + N N +G + GADG KTGF CASG+N+VASA + + LIAV+LGA
Sbjct: 193 MHIPAIRFGKRVTHNFNKLIGRYPGADGFKTGFICASGYNLVASATRNGRRLIAVVLGAN 252
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R +A LL GF T + + PN+ +E+C +++ +
Sbjct: 253 SGQDRAVKAAQLLERGFSANTLAWLTPSLGTVDNLAPIDATPPNLRDEMCGPKRKRPASD 312
Query: 308 TQMKEAKDK 316
+ A
Sbjct: 313 EDEQVASVI 321
>gi|56698478|ref|YP_168853.1| D-alanyl-D-alanine carboxypeptidase family protein [Ruegeria
pomeroyi DSS-3]
gi|56680215|gb|AAV96881.1| D-alanyl-D-alanine carboxypeptidase family protein [Ruegeria
pomeroyi DSS-3]
Length = 477
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 95/294 (32%), Positives = 145/294 (49%), Gaps = 4/294 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R L++ + ++ A ++D TG V+ D +PASLTK+MT
Sbjct: 12 RLGLILFFAIWMIAALSGVARAAP---YAAMVIDARTGEVLHATNADTRLHPASLTKMMT 68
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
Y+ F ++ + + T + I A++ PPS + G + ++ VKSAND A
Sbjct: 69 LYIAFEAVRNGELTMDTQVRIDPFAAKEPPSKLGLRAGQKIAFRYLVRAAAVKSANDAAT 128
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+I ++ +E F + MN T+K LG++ T F NAHG+ + GH +TARDM L + D+
Sbjct: 129 SIGIAISGSEAAFARRMNRTAKALGMTRTTFKNAHGLTESGHLSTARDMTTLGRHLLYDY 188
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
PQY + F + K NTN + + GADG+KTG+T A+GFN+VASA +GD+ +I
Sbjct: 189 PQYYNLFSRRETSAGIKTVANTNRRLLDAYQGADGIKTGYTQAAGFNLVASAKRGDERVI 248
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
A + G RN A LL +GF R I Y + +
Sbjct: 249 ATVFGGKSSTARNAKVAELLDLGFRKAPSRAPIRRPDMPLYAGEVGESSKTVRV 302
>gi|159043222|ref|YP_001532016.1| D-alanyl-D-alanine carboxypeptidase [Dinoroseobacter shibae DFL 12]
gi|157910982|gb|ABV92415.1| D-alanyl-D-alanine carboxypeptidase [Dinoroseobacter shibae DFL 12]
Length = 493
Score = 196 bits (498), Expect = 3e-48, Method: Composition-based stats.
Identities = 96/278 (34%), Positives = 145/278 (52%), Gaps = 1/278 (0%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
IIA+ + + ++D TG V+ D +PASLTK+MT Y+
Sbjct: 9 FRIIAIVCVCLGMQISAQPVQAAPYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYI 68
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F ++ + L T + ISK A+ PPS + G + L ++ V+SAND A AI
Sbjct: 69 AFEAVRMGEIGLDTKVRISKKAAAEPPSKLGLRPGQQIALRYLIRASAVRSANDAATAIG 128
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E++ +E F + MN T+K LG+++T F NAHG+ + GH +TARDM L + D+P+Y
Sbjct: 129 EAISGSEAAFARRMNRTAKALGMNSTTFKNAHGLTESGHLSTARDMTTLGRHLFYDYPEY 188
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ F + + NTN + + GADG+KTG+T A+GFN+VASA +G + +IA +
Sbjct: 189 YNLFSRRSTDTTMGTVANTNRRLLNAYRGADGIKTGYTRAAGFNLVASAERGQERIIATV 248
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
G TRN+ A LL +GF + Y
Sbjct: 249 FGGRSSATRNQRVAELLDLGFQRAPSVASVRKPAPPRY 286
>gi|296103402|ref|YP_003613548.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295057861|gb|ADF62599.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 403
Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats.
Identities = 83/330 (25%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K
Sbjct: 32 LNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
T +TI +A K G + + ++ + ++S ND VA+A+
Sbjct: 92 FKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFA 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN+ LGL +HF HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDAFVGLMNSYVSALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYAI 211
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K G + N N + DG+KTG T +G+N+VASA +G LI+ ++G
Sbjct: 212 YKEKEFTFNGIRQTNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + +++ T
Sbjct: 272 RTFKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPVWFGDNDRASLGVDKDLYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +K ++
Sbjct: 332 GRMKDLKASYVLNTTELHAPLQKNQVVGTI 361
>gi|145641831|ref|ZP_01797406.1| hypothetical protein CGSHiR3021_01137 [Haemophilus influenzae
R3021]
gi|229846948|ref|ZP_04467054.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
7P49H1]
gi|145273453|gb|EDK13324.1| hypothetical protein CGSHiR3021_01137 [Haemophilus influenzae
22.4-21]
gi|229810032|gb|EEP45752.1| penicillin-binding protein 5 precursor [Haemophilus influenzae
7P49H1]
Length = 393
Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats.
Identities = 90/341 (26%), Positives = 146/341 (42%), Gaps = 9/341 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + A ++ + F Y L+D N+G ++ PD PASLTK+MT+Y
Sbjct: 14 FVALSAFSVSAEDMQFGITPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
VV LK+ K T +TI ++A S + +++ + + +IV S ND
Sbjct: 74 VVGVALKQGKIHNTDMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDAT 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + FV+ MN + GL T+F HG+ Y++ARDMAI+ I D
Sbjct: 134 VALAEHISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
P+ + K K N N + DGMKTG T +G+N+VASA +
Sbjct: 194 LPEEYKIYSEKDFTFNKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISE 294
LI+V++G R S LL GF N K + + Y + ++
Sbjct: 254 LISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGAFM 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ T + + + ++ K ++ + +
Sbjct: 314 DHFITIPKGKQSEVKARYELADKNLQAPLAKGQVIGKVVYQ 354
>gi|270261117|ref|ZP_06189390.1| hypothetical protein SOD_a03420 [Serratia odorifera 4Rx13]
gi|270044601|gb|EFA17692.1| hypothetical protein SOD_a03420 [Serratia odorifera 4Rx13]
Length = 401
Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats.
Identities = 89/346 (25%), Positives = 159/346 (45%), Gaps = 14/346 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+++ +++ +L+ + A + L+D N+G ++ E D +PASLT
Sbjct: 10 LKKLTFSVSILLLATPAIQAAEAPAAPQVDAKAFVLMDYNSGKILTEGNADTRLDPASLT 69
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
K+M++YV+ +K K +T+ K+A K G + + K +
Sbjct: 70 KIMSSYVIGQAIKAGKIKPEDMVTVGKDAWATGNPALRGSSLMFIKPGDQVPVMELNKGI 129
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+++S ND ++A+A+ + ++ FV MNN +K+LGL THF+ HG+ G Y+TARDMA
Sbjct: 130 VIQSGNDASIALADYVAGSQDSFVGLMNNYAKSLGLQNTHFLTVHGLDAEGQYSTARDMA 189
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVA 230
+LS + D P + K + N N + L DG+KTG+T +G N+VA
Sbjct: 190 LLSQALIRDVPVEYALHKEKEFTFNKIRQVNRNRLLWSSNLNVDGIKTGYTGGAGHNLVA 249
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLS 286
SA G LI+V+LGA R S LL+ GF I + + + ++
Sbjct: 250 SATDGPMRLISVVLGAPSDRIRFSESEKLLTWGFRFYETATPIKTDKPFVTQRVWFGEIN 309
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++++ T + N + ++ + K ++
Sbjct: 310 DVPLGVAKDAAVTIPKGQMKNLKASYKLNQPTLEAPLAKNQVVGTI 355
>gi|85058773|ref|YP_454475.1| D-alanyl-D-alanine carboxypeptidase fraction A [Sodalis
glossinidius str. 'morsitans']
gi|84779293|dbj|BAE74070.1| penicillin-binding protein 5 [Sodalis glossinidius str.
'morsitans']
Length = 403
Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 83/330 (25%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+ E D +PASLTK+MT+YV+ +K K
Sbjct: 32 VNLKTMIPGVPQIDAESYILIDYNSGKVLTEMNADVRRDPASLTKMMTSYVIGQAIKSGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T++K+A K G + + + +I++S ND VA+A+ +
Sbjct: 92 ITPNDVVTVNKDAWATGNPVFKGSSLMFLKPGDRVPVSQLNRGIILQSGNDACVAMADYV 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN LGL THF HG+ G +++ARDMA++ + D P
Sbjct: 152 AGSQDAFVGLMNNYVGALGLQNTHFETVHGLDAPGQFSSARDMAMIGKALIRDVPDEYAT 211
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N + L DG+KTG T ++G+N+VASA +G LI+ +LG
Sbjct: 212 YKEKEFTFNNIRQMNRNGLLWDSNLNVDGIKTGHTESAGYNLVASATEGQMRLISAVLGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S L++ GF + + + + + + + T
Sbjct: 272 HSMKGRENESRKLMTWGFRFFETVAPLKAGKEFAAEPVWFGDTDSVKLGVDSDAYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + D + K +
Sbjct: 332 GRMKDLKASYVLDNQELHAPLAKNQRVGTI 361
>gi|113866332|ref|YP_724821.1| D-alanyl-D-alanine carboxypeptidase (serine-type) [Ralstonia
eutropha H16]
gi|113525108|emb|CAJ91453.1| D-Alanyl-D-alanine carboxypeptidase (serine-type) [Ralstonia
eutropha H16]
Length = 399
Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 86/322 (26%), Positives = 147/322 (45%), Gaps = 15/322 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ L D +G +A D PASLTKLMTAY+ F LKEK+ L + +
Sbjct: 39 PQVAAKSWMLYDVTSGQALASQNADARIEPASLTKLMTAYLAFEALKEKRLTLDQAVVPT 98
Query: 84 --KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ S + +T+ + L LIV+S ND A+A+AE++ +E+ FV MN
Sbjct: 99 SVVLKVKSDESRMFIEPNKPVTVQDLLLGLIVQSGNDAALALAEAVGGSEEGFVAMMNRE 158
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
++ +G+ THF N G+ HYTTA D+A L+ R+ DFP+Y + K + P
Sbjct: 159 AQRMGMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIKDFPEYYAMYSQKEFTYNKIRQP 218
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNK 254
N N + DG+KTG T ++G+ +++SA + G + LI++++G R +
Sbjct: 219 NRNRLLYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPDGSRRLISIVIGTTTEQVRTQ 278
Query: 255 VSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNT 308
S +L+ GF + + D Y+ + E V +
Sbjct: 279 ESLKILNYGFQFFDTLRLYDKGQVLATPDIYKGKSGTVKIGVQNETFVTVPKGTGGRLKP 338
Query: 309 QMKEAKDKESHFIDFEKITLLK 330
++ + + +++ ++K
Sbjct: 339 VLERQELLIAPISAGQQVGMVK 360
>gi|262274734|ref|ZP_06052545.1| D-alanyl-D-alanine carboxypeptidase [Grimontia hollisae CIP 101886]
gi|262221297|gb|EEY72611.1| D-alanyl-D-alanine carboxypeptidase [Grimontia hollisae CIP 101886]
Length = 347
Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 89/312 (28%), Positives = 146/312 (46%), Gaps = 13/312 (4%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP--- 90
+D N+G ++AEN NPASLTK+MT+YV+ ++ L + ISKNA
Sbjct: 1 MDYNSGKILAENNAYERLNPASLTKMMTSYVIGQEIERGNISLDDDVVISKNAWAKNFPG 60
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
S + G+T+ +++ + +I++S ND VA+AE + +E FV MN +K LG++ T
Sbjct: 61 SSKMFIEVGTTVKVEDLNRGIIIQSGNDACVAMAEHIAGSEDSFVDLMNGWAKTLGMNNT 120
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGT 209
F N+HG+ G Y+T DMA+L + D P+ + K G N N
Sbjct: 121 KFSNSHGLDDDGLYSTPYDMALLGQALIRDVPEEYRIYNEKSFTYNGITQYNRNGLLWDK 180
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ DG+KTG T +G+++V+SA +GD LIAV++G N R S LL+ GF
Sbjct: 181 SMNVDGIKTGHTEKAGYSLVSSATEGDMRLIAVVMGTESANARKAESKKLLNYGFRFFET 240
Query: 270 RKKINYII----KDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + + ++++ V + + N K E+
Sbjct: 241 VAPHKAGETFVTEKVWMGDTDQVALGVAKDTYVTLPRGKAKNLEASFVLEKTLEAPIA-- 298
Query: 324 EKITLLKNKITK 335
K ++ +
Sbjct: 299 -KGDVVGKLYYQ 309
>gi|259417976|ref|ZP_05741895.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp.
TrichCH4B]
gi|259346882|gb|EEW58696.1| serine-type D-Ala-D-Ala carboxypeptidase [Silicibacter sp.
TrichCH4B]
Length = 559
Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 103/317 (32%), Positives = 158/317 (49%), Gaps = 6/317 (1%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + + + ++D TG V+ D +PASLTK+MT Y+ F +
Sbjct: 46 LTLAVGLVAVVPEQAAAAPYAAMVMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAV 105
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ + L T IT+S+NA PPS ++G + L ++ VKSAND A AI E++
Sbjct: 106 RNGEISLDTEITVSRNAEAEPPSELGLRRGQKIALRYLIRAAAVKSANDAATAIGEAISG 165
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+E F + MN T+K LG++ T F NAHG+ +GH +TARDM IL + D+P+Y + F
Sbjct: 166 SEAAFARRMNRTAKALGMTRTTFKNAHGLTANGHMSTARDMTILGRHMLYDYPEYYNLFS 225
Query: 190 IKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
K K NTN + GADG+KTG+T A+GFN+V+SA +GD+ +IA + G
Sbjct: 226 RKSTNAGTKVVYNTNRRFLAAYRGADGIKTGYTRAAGFNLVSSAKRGDERIIATVFGGQS 285
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
RN A LL +GF K+ Y N V ++ + I +
Sbjct: 286 TAARNAKVAELLDLGFRRAPAYAKLQKPPMPPYVGNSG--VRLAEDDTHGLAGKTIRVSG 343
Query: 309 QMKE---AKDKESHFID 322
+ E + + + +D
Sbjct: 344 VISETMRPRARPAPEVD 360
>gi|163732221|ref|ZP_02139667.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter litoralis Och 149]
gi|161394519|gb|EDQ18842.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter litoralis Och 149]
Length = 389
Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 92/341 (26%), Positives = 150/341 (43%), Gaps = 12/341 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
I+ A + + A + ++D TG V+ D P PAS++KLMT Y+
Sbjct: 2 FRIVLAAFVLVASTLSAAAFETRAGAAFVMDQTTGTVLLNKNADAPLPPASMSKLMTLYM 61
Query: 65 VFSFLKEKK----AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
F ++ K L + +S++A Y S+ + G T+++++ L+ +IV S ND
Sbjct: 62 AFEAVRRGKADGGLDLNELLPVSEHAQSYGGSSMFLRSGETVSVEDLLRGIIVVSGNDAC 121
Query: 121 VAIAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
V IAE+L E F + M ++ LG++ + F+NA G Q GH + RD+AIL+ R+
Sbjct: 122 VVIAEALSPDGTEYGFARMMTQRAQQLGMNNSTFINASGWPQTGHVMSMRDLAILADRLI 181
Query: 179 TDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
TDFP++ F + N N + +GADG+KTG T +G+ +V SA QG
Sbjct: 182 TDFPEFYPMFAETEFPFDNRVPSNSRNRNPVLTMGIGADGLKTGHTQEAGYGLVGSAKQG 241
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNI 292
D+ +I VI G R + S ++++ F R K S +V +
Sbjct: 242 DRRVIFVITGLETTAARAQESQAIVNWAFRQFAMRDIGKAGQEFAKADVWMGSSPQVGLV 301
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ E + E K L +
Sbjct: 302 AAEDMNVLMPALADREIEAEVVFTGPIEAPIAKGDPLGELV 342
>gi|225018728|ref|ZP_03707920.1| hypothetical protein CLOSTMETH_02678 [Clostridium methylpentosum
DSM 5476]
gi|224948456|gb|EEG29665.1| hypothetical protein CLOSTMETH_02678 [Clostridium methylpentosum
DSM 5476]
Length = 395
Score = 196 bits (497), Expect = 4e-48, Method: Composition-based stats.
Identities = 82/356 (23%), Positives = 150/356 (42%), Gaps = 22/356 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-----------------IAETNKLPYYTLLDTNTGHVIA 43
M + L +A+++ L I+ Y L++ +TG V++
Sbjct: 1 MIRKLTALAVSLALLCSSALPVFADGLPEEVDETVAADISAGIPAKSYILMEASTGKVLS 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
E+ D PAS+TK+M ++ + L +T S++A+ + + G M+
Sbjct: 61 ESNADEQMAPASITKIMVMLLLMERIDAGTVTLDDMVTTSEHANSMGGTQIWLEVGEQMS 120
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+++ LK V SAND AVA+AE + +E+ F + MN +K LG+ T F NA G+ GH
Sbjct: 121 VNDLLKATAVNSANDAAVALAEYMAGSEEAFAELMNQRAKELGMVNTTFKNATGLDADGH 180
Query: 164 YTTARDMAILSWRIKTDFP-QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+TARD+A+++ + + L NTN V + G +GMKTG T
Sbjct: 181 LSTARDIALMTQELLKHPKITEYTSIYMDSLRDGTTGLVNTNKMVRFYEGCNGMKTGTTD 240
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+G + +A + +LI+V +G+ R + + +LL GF + +
Sbjct: 241 DAGSCLSCTATRDGMTLISVSMGSTTSKERFQSARTLLDHGFASYSLYTPELDPSLIPPI 300
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNT----QMKEAKDKESHFIDFEKITLLKNKIT 334
+ + ++ ++ + I+ +E E E ++
Sbjct: 301 KVNGGQQGSVGVKIDSASSNIVIPKGGESQVQQEISLAEELDAPVEPDQVVGKVTY 356
>gi|157146752|ref|YP_001454071.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter koseri
ATCC BAA-895]
gi|157083957|gb|ABV13635.1| hypothetical protein CKO_02526 [Citrobacter koseri ATCC BAA-895]
Length = 403
Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats.
Identities = 84/347 (24%), Positives = 143/347 (41%), Gaps = 18/347 (5%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ A +++ + Y L+D N+G V+AE D +PASL
Sbjct: 15 LTTALCAAFITSAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADTRRDPASL 74
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKL 110
TK+MT+YV+ +K K T +TI +A K G + + ++
Sbjct: 75 TKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRG 134
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDM
Sbjct: 135 INLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDM 194
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIV 229
A++ + D P ++ K G + N N + DG+KTG T +G+N+V
Sbjct: 195 ALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLV 254
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNL 285
ASA +G LI+ ++G R S LL+ GF + + + +
Sbjct: 255 ASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKVGKEFASEPAWFGDT 314
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++V T + + + +K ++
Sbjct: 315 DRASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGTI 361
>gi|239817881|ref|YP_002946791.1| beta-lactamase [Variovorax paradoxus S110]
gi|239804458|gb|ACS21525.1| Beta-lactamase [Variovorax paradoxus S110]
Length = 389
Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats.
Identities = 94/341 (27%), Positives = 154/341 (45%), Gaps = 15/341 (4%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
++ + Y LLD ++A+ D P PASLTKLM+AY+VF L+
Sbjct: 18 SVGMIAAAQVPAPPEIAARSYLLLDVTANQILAQKDIDSPVEPASLTKLMSAYIVFDALR 77
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
KK LT + +S+ A + P S + +++ +K LIV+S ND VA+AE + T
Sbjct: 78 AKKITLTQTMPVSQRAWKMPGSRMFIDPKMQVPVEDLIKGLIVQSGNDATVALAEGVGGT 137
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+ FV+ MN +K LG+ T + N G+ GH TTARD++IL+ R+ DFP+ Y+ I
Sbjct: 138 VEHFVELMNAQAKALGMKNTSYKNPEGLTAPGHTTTARDLSILATRLVRDFPEEAKYYAI 197
Query: 191 KGLEI---KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG------DQSLIA 241
K N N + DG+KTG T A+G+ ++A+A + + L++
Sbjct: 198 KKYRYPGTPSTNDTNRNLLLFRDPTVDGLKTGHTEAAGYCMIATAKRDFPNLTGGRRLLS 257
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEE--- 295
++LG R S LL+ G+ + + + +N + E
Sbjct: 258 IVLGTSGETVRANESQKLLNWGYTAYDAVRLFDAGQPAATPAVWKGKANTLKLGRPEAIV 317
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
V TQ+ + F ++ + LK + +
Sbjct: 318 VAVPAGTASKIKTQVARPDPLVAPFTKYQPVGSLKVTLDDQ 358
>gi|85715534|ref|ZP_01046515.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
sp. Nb-311A]
gi|85697729|gb|EAQ35605.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
sp. Nb-311A]
Length = 413
Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats.
Identities = 76/317 (23%), Positives = 135/317 (42%), Gaps = 11/317 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P L++ +G V+ E D P+S+ KLMTA VVF+ +++ + LT IS+
Sbjct: 50 ETSAPTAILVEAKSGSVLFEKNADELRAPSSMMKLMTAEVVFNAIRKGEIKLTDEYVISE 109
Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
N S S +++ + L I++S ND +A+AE + E F + M
Sbjct: 110 NTWRKGGAPSGGSTMFAAINSRVSVQDLLHGAIIQSGNDSCMALAEGIAGNESAFAEKMT 169
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ LGL+ + F N++G+ + T R++A+L+ I +P + F + +
Sbjct: 170 ARARELGLTRSTFANSNGLPHPDNKMTVRELAVLARHIILTYPDFYKLFGEREFTWNKIR 229
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N + GADG+KTG+T G+ +V S +Q LI V+ G + R + L
Sbjct: 230 QLNRNALLTAMDGADGLKTGYTKEGGYGMVGSVVQNGTRLIVVVNGLESADDRATAAKKL 289
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEIINYNTQMKEA 313
L GF N R Y + + ++ +V + ++
Sbjct: 290 LEWGFRNFEIRTLFAAEQPVGYAKVFGGDSGSVQIAASDPVQVMVQKNGNDKLLARIVYT 349
Query: 314 KDKESHFIDFEKITLLK 330
+ + I ++K
Sbjct: 350 GPVRAPVAPEQPIGVIK 366
>gi|254418835|ref|ZP_05032559.1| beta-lactamase, putative [Brevundimonas sp. BAL3]
gi|196185012|gb|EDX79988.1| beta-lactamase, putative [Brevundimonas sp. BAL3]
Length = 493
Score = 195 bits (496), Expect = 5e-48, Method: Composition-based stats.
Identities = 97/261 (37%), Positives = 150/261 (57%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ +++ + +N+ P + ++ N ++D +G V+ + D PASLTK+MT Y+
Sbjct: 12 VLALSLVLGANVRPIEAQSQENSRYAAIVIDAASGEVLFSRHADSRRYPASLTKMMTLYL 71
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F L + K +T+S+ A+ PPS G T+TLD+A++ V+SAND+AVAIA
Sbjct: 72 TFEALSQGKVHADDVLTVSQQAAAQPPSKLGLGAGQTITLDDAMRATAVRSANDMAVAIA 131
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + +E +F M ++ LG++ T + A+G+ T+ARD AIL+ I DFPQY
Sbjct: 132 EHIGGSESRFATLMTAKAQQLGMTQTRYFTANGLPDARQTTSARDQAILARAIMRDFPQY 191
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
YF + G+ Y NTN + T G DGMKTG+T ASG+N+ ASA++ + LI V+L
Sbjct: 192 YKYFGLHDWAYNGRSYRNTNGLLPTGNGYDGMKTGYTNASGYNLAASAVRDGRRLITVVL 251
Query: 245 GALDRNTRNKVSASLLSMGFY 265
G +RN A L+ GF
Sbjct: 252 GGRSSASRNAHVAELMDTGFE 272
>gi|126739529|ref|ZP_01755221.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
SK209-2-6]
gi|126719175|gb|EBA15885.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter sp.
SK209-2-6]
Length = 493
Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats.
Identities = 104/260 (40%), Positives = 145/260 (55%), Gaps = 1/260 (0%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+LD TG V+ D +PASLTK+MT Y+ F ++ + L T + ISKN
Sbjct: 2 AAPYAAMVLDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAIRNGEISLDTKVRISKN 61
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A+ PPS + G + L ++ VKSAND A AI E+L +E F + M T+K L
Sbjct: 62 AAAEPPSKLGLRSGQRIALRYLIRAAAVKSANDAATAIGEALSGSEAAFARRMTRTAKAL 121
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
G+S T F NAHG+ + GH +TARDM L I D+P+Y + F K + K PNTN
Sbjct: 122 GMSRTSFKNAHGLTESGHMSTARDMTTLGRHILYDYPEYYNLFSRKTADAGVKTVPNTNR 181
Query: 206 A-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
+ + GADG+KTG+T A+GFN+VASA +G++ +IA + G +RN A LL +GF
Sbjct: 182 RLLAAYKGADGIKTGYTRAAGFNLVASAKRGNERIIATVFGGKSSTSRNAKVAELLDLGF 241
Query: 265 YNKTDRKKINYIIKDFYQQN 284
R K+ + YQ N
Sbjct: 242 RRAPSRAKLRKPGRPAYQGN 261
>gi|322383131|ref|ZP_08056958.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321152793|gb|EFX45419.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 414
Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats.
Identities = 87/362 (24%), Positives = 151/362 (41%), Gaps = 38/362 (10%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + S + + L++ NTG V+ EN D PAS++K+MT Y++ +
Sbjct: 9 LFVSSAAAADANEIPDLQAKSAILMEANTGQVLYENNADTLLPPASMSKMMTEYLIMEAI 68
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K+ K + +SK A+ S +G +++ + + + S+ND +VA+AE L
Sbjct: 69 KDGKIKWEDKVPVSKQAASAIGSGQLLAEGEQLSVKDMFYAISIYSSNDASVAMAEYLGG 128
Query: 130 TEKKFVQHMNNTSKNLGLSA-THFMNAHGVV------------QHGHYTTARDMAILSWR 176
TE++F MN +K LGLS HF+NA G+ + TARD AIL+
Sbjct: 129 TEEEFANMMNKKAKELGLSEGAHFINATGLTRADLGQYAPKNIEGETMMTARDAAILARH 188
Query: 177 IKTDFPQYMHY-----------FQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTC 222
I D PQ + + + + N N+ + G DG+KTG T
Sbjct: 189 IVLDHPQVLEFTKTTSKKLRETDKTPMINFNWMLEGNKGNINFKPYAYDGLDGLKTGHTN 248
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+G+ +A +GD LI+V++G R + + +L GF N RK ++ +
Sbjct: 249 EAGYCFTGTAQRGDMRLISVVMGTNSEPKRFQETRKVLDYGFNNFEMRKVLDAN-APVEE 307
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES----------HFIDFEKITLLKNK 332
Q + +E+ KE +++ + K + +K +
Sbjct: 308 QKTVKISKGVKKEIEAGVKEPVSFVVKKGSGDVKVTGKVDPVSDKDLVAPIKKGDKVGTA 367
Query: 333 IT 334
Sbjct: 368 TL 369
>gi|188591036|ref|YP_001795636.1| d-alanyl-d-alanine carboxypeptidase; penicillin-binding protein 6a
[Cupriavidus taiwanensis LMG 19424]
gi|170937930|emb|CAP62914.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
[Cupriavidus taiwanensis LMG 19424]
Length = 399
Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats.
Identities = 85/322 (26%), Positives = 146/322 (45%), Gaps = 15/322 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ L D +G +A D PASLTKLMTAY+ F LKEK+ L + +
Sbjct: 39 PQVAAKSWMLYDVTSGQALASQNADARIEPASLTKLMTAYLAFEALKEKRLTLDQAVVPT 98
Query: 84 KNASEYPPS--NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ + +T+ + L LIV+S ND A+A+AE++ +E+ FV MN
Sbjct: 99 NLVLKVKSDESRMFIEPNKPVTVQDLLLGLIVQSGNDAALALAEAVGGSEEGFVAMMNRE 158
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
++ +G+ THF N G+ HYTTA D+A L+ R+ DFP+Y + K + P
Sbjct: 159 AQRMGMKNTHFTNTDGIPDPNHYTTAVDLATLTTRLIKDFPEYYSMYSQKEFTYNKIRQP 218
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNK 254
N N + DG+KTG T ++G+ +++SA + G + LI++++G R +
Sbjct: 219 NRNRLLYIDSTVDGVKTGHTKSAGYCLISSAKRPLANVPDGSRRLISIVIGTTTEQVRTQ 278
Query: 255 VSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNT 308
S +L+ GF + + D Y+ + E V +
Sbjct: 279 ESLKILNYGFQFFDTLRLYDKGQVLATPDIYKGKSGTVKIGVQNETFVTVPKGTGGRLKP 338
Query: 309 QMKEAKDKESHFIDFEKITLLK 330
++ + + +++ ++K
Sbjct: 339 VLERQELLIAPISAGQQVGMVK 360
>gi|260597057|ref|YP_003209628.1| D-alanyl-D-alanine carboxypeptidase fraction A [Cronobacter
turicensis z3032]
gi|260216234|emb|CBA29137.1| D-alanyl-D-alanine carboxypeptidase dacA [Cronobacter turicensis
z3032]
Length = 370
Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats.
Identities = 81/324 (25%), Positives = 138/324 (42%), Gaps = 11/324 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K +
Sbjct: 5 IPGVPQIDAEAYILIDYNSGKVLAEQNADARRDPASLTKMMTSYVIGQAMKAGKFKESDV 64
Query: 80 ITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+TI +A K G + + ++ + ++S ND VA+A+ + ++
Sbjct: 65 VTIGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDA 124
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
FV MN+ LGL THF HG+ G Y++ARDMA++ + D P ++ K
Sbjct: 125 FVGLMNSYVTALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYREKEF 184
Query: 194 EIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
G + N N + DG+KTG T +G+N+VASA +G LI+ ++G R
Sbjct: 185 TFNGIRQTNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGR 244
Query: 253 NKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
S LL+ GF + + + + + +++ T +
Sbjct: 245 EAESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGDNDRASLGVDKDIYLTIPRGRMKDL 304
Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332
+ + K ++
Sbjct: 305 KASYVLNTSELHAPLAKNQVVGTI 328
>gi|292487778|ref|YP_003530653.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora CFBP1430]
gi|292899010|ref|YP_003538379.1| penicillin-binding protein 6 [Erwinia amylovora ATCC 49946]
gi|291198858|emb|CBJ45968.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase)
[Erwinia amylovora ATCC 49946]
gi|291553200|emb|CBA20245.1| D-alanyl-D-alanine carboxypeptidase [Erwinia amylovora CFBP1430]
Length = 402
Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 143/325 (44%), Gaps = 11/325 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ A + L+D N+ V+AE D +PASLTK+M++YV+ LK K
Sbjct: 32 QMPAAPQLDAKAWILMDYNSSKVLAEYNADLRLDPASLTKMMSSYVIGQALKAGKISKDD 91
Query: 79 PITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+T+ K+A K G + + K ++++S ND ++A+A+ + ++
Sbjct: 92 VVTVGKDAWATGNPVLKGSSLMFLKPGDRIAVSELNKGIVIQSGNDASIALADYVAGSQD 151
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
FV MN+ + LGL THF HG+ +G Y+TARDMA++ + D P + K
Sbjct: 152 AFVGLMNHYVQALGLKNTHFKTVHGLDANGQYSTARDMALIGQALIRDVPDEYALHKDKA 211
Query: 193 LEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ N N T L DG+KTG T +G N+VASA+ GD+ +I+V+LGA
Sbjct: 212 FTFNKIRQHNRNRLLWSTNLQVDGIKTGHTSGAGNNLVASAVDGDRRIISVVLGAATDAV 271
Query: 252 RNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R + S LL G N + + + + ++++ T N
Sbjct: 272 RFRESEKLLIWGVRNFETVTPVKAGNAFVTQRVWYGDRHEVNLGVAQDAAITLPHGQMKN 331
Query: 308 TQMKEAKDKESHFIDFEKITLLKNK 332
+ + K ++
Sbjct: 332 LKASFTLSQPQLTAPLAKNQVVGTI 356
>gi|237730616|ref|ZP_04561097.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter sp.
30_2]
gi|226906155|gb|EEH92073.1| D-alanyl-D-alanine carboxypeptidase fraction A [Citrobacter sp.
30_2]
Length = 403
Score = 195 bits (496), Expect = 6e-48, Method: Composition-based stats.
Identities = 85/330 (25%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K
Sbjct: 32 LNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADTRRDPASLTKMMTSYVIGQAMKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
T +T+ +A K G + + ++ + ++S ND VA+A+
Sbjct: 92 FKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFA 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN+ LGL THF HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAMIGQALIRDVPNEYSI 211
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K G + N N + DG+KTG T +G+N+VASA +G LI+ ++G
Sbjct: 212 YKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + N + ++V T
Sbjct: 272 RTYKGRETESKKLLTWGFRFFETVNPLKVGKEFASEPAWFGNTDRASLGVDKDVYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +K ++
Sbjct: 332 GRMKDLKASYVLNTTELHAPLQKNQVVGTI 361
>gi|160931733|ref|ZP_02079127.1| hypothetical protein CLOLEP_00565 [Clostridium leptum DSM 753]
gi|156869378|gb|EDO62750.1| hypothetical protein CLOLEP_00565 [Clostridium leptum DSM 753]
Length = 382
Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats.
Identities = 94/323 (29%), Positives = 145/323 (44%), Gaps = 4/323 (1%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ E P L++ +TG V+ E AS+TK+MT +V + + +
Sbjct: 23 VTAGALSEEDLTAPSAVLMEASTGKVLFEKNSHEVRACASITKVMTLLLVMEAIDQGRMS 82
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
LT IT S++AS S+ + G TM+ D+ +K +V SAND AVA+AE L TE+ FV
Sbjct: 83 LTDTITASEHASSMGGSDIWLEPGETMSADDMVKATVVASANDAAVALAEHLEGTEEAFV 142
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK-TDFPQYMHYFQIKGLE 194
Q MN + LG+ T F N +G+ + GH T+A D+A++S + + + L
Sbjct: 143 QKMNQRAAELGMKDTVFKNCNGLDEEGHVTSAYDVALMSRELIKHEKIFDYTTIWMDTLR 202
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ NTN + ++ G G+KTG T +G I A+A + SLI V+LG+ R
Sbjct: 203 EGKTQIVNTNKLLKSYNGITGLKTGTTGGAGSCITATAQRDGLSLIGVVLGSATGKERFT 262
Query: 255 VSASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+A+LL GF N T + + ++V S +
Sbjct: 263 DAAALLDYGFSNYMIYTPGLPEEALQPVPVVNGMQSQVAVESAASGSVLLTKGREKDLKT 322
Query: 312 EAKDKESHFIDFEKITLLKNKIT 334
E K ES K L +
Sbjct: 323 EVKLSESVEAPVAKGQQLGKIVY 345
>gi|83590342|ref|YP_430351.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
ATCC 39073]
gi|83573256|gb|ABC19808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
ATCC 39073]
Length = 412
Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats.
Identities = 82/318 (25%), Positives = 132/318 (41%), Gaps = 9/318 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D TG ++ E + PAS+TKLMT V + +A L P+ +S+
Sbjct: 57 DINAKGAILMDPQTGEILWEKNSHAHYYPASMTKLMTMVVAMDMVANGQATLDEPVQVSE 116
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A + S G T L+ L + V SAND AVA+AE L +E+ FV MN +K
Sbjct: 117 RAESFGGSEVFLAVGETFPLEQMLIAIAVASANDAAVAVAEHLAGSEEAFVAMMNAKAKE 176
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--- 201
LGL THF N HG+ +YT+A DMA+++ +P+ + IK ++
Sbjct: 177 LGLKDTHFANCHGLHDEQNYTSAYDMAVIARYAL-KYPKIREWTSIKRYTLRKDPLTILD 235
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
TN + + G DG KTGFT A+G N+V++ + L+AV++G S L +
Sbjct: 236 TTNKMLYWYPGTDGFKTGFTDAAGLNLVSTVERDGLRLVAVVMGVETPQGHFTESMKLYN 295
Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII-----NYNTQMKEAKDK 316
F ++ +V + I + +
Sbjct: 296 WAFKQWAFKEFYGPGQVVASIPVGKGQVEQVKIVTTGKVGARISRLRGKAEGVTTKVELP 355
Query: 317 ESHFIDFEKITLLKNKIT 334
++ ++ +
Sbjct: 356 GIVNAPVKEGQVVGQALV 373
>gi|296133697|ref|YP_003640944.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR]
gi|296032275|gb|ADG83043.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR]
Length = 413
Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats.
Identities = 87/343 (25%), Positives = 154/343 (44%), Gaps = 18/343 (5%)
Query: 3 QFLVIIAMAMLS---NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
LV+ + + I P + L+D +G V+ PD PAS TK+
Sbjct: 10 ILLVVFFVITVVGGPVIAPVYAQEPGIVGKAGVLIDARSGQVLYAKNPDLRLPPASTTKI 69
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+T + + +T+SKNA S+ G T+TL++ L +++ S ND
Sbjct: 70 LTVAIALEE-----GNVNDKVTVSKNAVTQEGSSIYLTAGETLTLEDLLYGVLLSSGNDA 124
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
AVA+AE + + FV+ MN +K G + ++F N +G+ HYTTARD+A+++
Sbjct: 125 AVAVAEHIAGSVPAFVKLMNKKAKEWGATNSNFCNPNGLPNDEHYTTARDLAMIAKH-AM 183
Query: 180 DFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ P + K EI + N N + + GA+G+KTG+T + +V+SA
Sbjct: 184 ELPLFREMAATKVKEIKRADPANFFRLINHNKLLWRYEGANGIKTGYTRVAQQCLVSSAK 243
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII--KDFYQQNLSNEVPN 291
+GDQ IAV+LG++ N S +LL GF N K + ++ ++ + +V
Sbjct: 244 RGDQEFIAVVLGSVGNNI-WTDSMALLDYGFKNFRTTKLVEKGKFIQEISVKDGTGKVRV 302
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
++E ++ + + + + +K +
Sbjct: 303 VTEREQYFTGKLADNDVPKAKTIIFKGLAAPIKKGQKVGYITY 345
>gi|156933395|ref|YP_001437311.1| D-alanyl-D-alanine carboxypeptidase [Cronobacter sakazakii ATCC
BAA-894]
gi|156531649|gb|ABU76475.1| hypothetical protein ESA_01208 [Cronobacter sakazakii ATCC BAA-894]
Length = 390
Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats.
Identities = 94/346 (27%), Positives = 144/346 (41%), Gaps = 18/346 (5%)
Query: 5 LVIIAMAMLSNIFPFL-------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
++ ++ ML+ I Y L+D TG ++A N NPASLT
Sbjct: 8 MIAVSCIMLAGITAQANAAALSMPQPPAIMAGSYVLMDYTTGQILAANNEHQQRNPASLT 67
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
KLMT YVV + + +T+ K+A K G +T+ + + L
Sbjct: 68 KLMTGYVVDRAIDSHRITPDDVVTVGKDAWAKDNPVFEGSSLMFLKAGDRVTVRDLSRGL 127
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
IV S ND VA+A+ + + +FV MN+ + LGL THF HG+ G +++A D+A
Sbjct: 128 IVDSGNDACVALADYVAGGQPQFVAMMNDYVQKLGLKDTHFETVHGLDAPGQHSSAYDLA 187
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVA 230
+LS I P + H + K L G N N L DG+KTG T +GFN++A
Sbjct: 188 VLSRAIIHGEPAFYHMYSEKSLTWNGITQQNRNGLLWDKTLNVDGLKTGHTSGAGFNLIA 247
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLS 286
S++ G + LIAVI+GA R + LL G + + K +
Sbjct: 248 SSVDGKRRLIAVIMGADSPKGREDQARKLLHWGQQTFDTVEILQKGKKVGTERVWYGKDE 307
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T + N + K D+E + +
Sbjct: 308 QVAVGTDRDFWLTLPKAQLANVKAKYLLDRERLDAPLDANERVGEI 353
>gi|222475494|ref|YP_002563911.1| Serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Anaplasma
marginale str. Florida]
gi|222419632|gb|ACM49655.1| Serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Anaplasma
marginale str. Florida]
Length = 380
Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats.
Identities = 79/340 (23%), Positives = 142/340 (41%), Gaps = 8/340 (2%)
Query: 1 MRQFLV-----IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+R+FL+ L+ P ++ K P+ + + + V+ E+ D P+S
Sbjct: 2 IRRFLLSFLVPAFCCLALAPARPSYALKMHTKAPHAIVYELGSRTVLFEHDADVAVAPSS 61
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KLMT Y+VF L + ++S++A + S++ K G + + + + V S
Sbjct: 62 MSKLMTLYLVFQHLHAGLIKMDDTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSS 121
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND +A+AE + ++++FV+ +N+ +K + L+ + F N G GH + RD+ LS
Sbjct: 122 GNDACIALAEGVSGSQEQFVEDINSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSV 181
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
RI DFP+Y H F K G N N + +G DG+KTG T +G+ I ASA +
Sbjct: 182 RIFEDFPEYYHVFGEKQFTYNGVTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQKD 241
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNI 292
++ + V+ G R + LL F + + V
Sbjct: 242 NRRVFVVVNGLKTETERAYETKRLLLYAFNRFETKVVFPAGSVVGEVKVWNGRKGTVQMH 301
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + K + +K +
Sbjct: 302 VRDDVVISYPRDLSKSVKAFISHKSTIAAPVKKGQEIGTL 341
>gi|149190858|ref|ZP_01869122.1| D-alanyl-D-alanine carboxypeptidase [Vibrio shilonii AK1]
gi|148835318|gb|EDL52291.1| D-alanyl-D-alanine carboxypeptidase [Vibrio shilonii AK1]
Length = 394
Score = 195 bits (495), Expect = 7e-48, Method: Composition-based stats.
Identities = 98/322 (30%), Positives = 148/322 (45%), Gaps = 9/322 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
T Y L+D +G ++ D PASLTKLMTAYVV ++ + +
Sbjct: 25 TPNPPTLNAKGYVLMDYQSGAILVGGNQDAALAPASLTKLMTAYVVGKEIENGRTSWDSK 84
Query: 80 ITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ +S+NA S K G +T+ + L+ LIV+S ND AVA+AE + TE FV
Sbjct: 85 VAVSENAWSVKFPDSSKMFIKPGDNVTVADLLRGLIVQSGNDAAVALAEHVAGTESGFVA 144
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN + NLG++ T F+NAHG+ G +TT DMAIL +I D P+ + K
Sbjct: 145 LMNQWAVNLGMNNTQFINAHGLDGQGIHTTPNDMAILMRKIIEDVPEVYEIYSEKRFVWA 204
Query: 197 GKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K N N + DG KTG+T +G+++V+SA QG LI+V++G TR +
Sbjct: 205 DIKQYNRNRLLWDNSLNVDGGKTGYTSDAGYSLVSSATQGQMRLISVVMGTPSTQTRVEA 264
Query: 256 SASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
S LL+ GF + + ++ +N +V T N K
Sbjct: 265 SRQLLNYGFRFYETDQLAVADESEATIRVWKGKNANIDVGFDHDVYATYLRG-NSRGVTK 323
Query: 312 EAKDKESHFIDFEKITLLKNKI 333
E + ++ ++ N
Sbjct: 324 ETEIYAPLVAPVKQGDIIGNVT 345
>gi|254465451|ref|ZP_05078862.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium Y4I]
gi|206686359|gb|EDZ46841.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium Y4I]
Length = 389
Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats.
Identities = 83/324 (25%), Positives = 145/324 (44%), Gaps = 8/324 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ A ++D T V+ D P PAS++KLMT YV F L++ + L
Sbjct: 21 PAAAFDTSARAAYVVDAGTDTVLLSKNSDVPLPPASMSKLMTLYVAFEALRDGRLTLDER 80
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT--EKKFVQH 137
+ +S++A Y S + +++ L+ +IV S ND V IAE+L E F ++
Sbjct: 81 LPVSEHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACVVIAEALSPDGTEAGFARY 140
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK- 196
M ++++G++A+ F N++G GH + D+A+L+ R+ DFP+Y F E
Sbjct: 141 MTKRAEDMGMTASTFANSNGWPAAGHRMSVHDLAVLAERLIEDFPEYYPLFAETTFEFDG 200
Query: 197 --GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N N + +GADG+KTG T +G+ +V SA QGD+ +I V+ G R +
Sbjct: 201 RAPSNIRNRNPLLRLGIGADGLKTGHTEEAGYGLVGSATQGDRRVIFVVSGLDTERGRAE 260
Query: 255 VSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+ ++++ F T + I + + V + + ++ NT
Sbjct: 261 EAEAIVNWSFRQFTKKTVAKEGIAIAEAEIWRGAERSVGLVPAKDLEILLPSLSANTIQG 320
Query: 312 EAKDKESHFIDFEKITLLKNKITK 335
E +K L + +
Sbjct: 321 EVVYNGPIEAPVKKGQRLAELVLQ 344
>gi|238785719|ref|ZP_04629693.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC
43970]
gi|238713359|gb|EEQ05397.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia bercovieri ATCC
43970]
Length = 383
Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats.
Identities = 87/328 (26%), Positives = 139/328 (42%), Gaps = 11/328 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 12 VNLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGK 71
Query: 74 AMLTTPITISKNAS------EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A S K G + + + + ++S ND VA+A+ +
Sbjct: 72 IGPEDMVTVGKDAWATGNPEFQGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 131
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN LGL T F HG+ G Y++ARDMA++ + D P
Sbjct: 132 AGSQDSFVNLMNNYVNALGLKNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAI 191
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T ++G+N+VASA G LI+ +LG
Sbjct: 192 YKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATDGQMRLISAVLGG 251
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 252 RTYKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDSDRVQLGVDKDVYLTIPR 311
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + K ++
Sbjct: 312 GRMKDLKASYVLNTPEIHAPLAKNQVVG 339
>gi|254460841|ref|ZP_05074257.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales
bacterium HTCC2083]
gi|206677430|gb|EDZ41917.1| D-alanyl-D-alanine carboxypeptidase family protein
[Rhodobacteraceae bacterium HTCC2083]
Length = 454
Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats.
Identities = 104/310 (33%), Positives = 153/310 (49%), Gaps = 8/310 (2%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
M+ + +S A ++D +G V+ D +PASLTK+MT YV F ++
Sbjct: 1 MVVALPLSVSAAP----YAAFVMDARSGEVLHARNADTRLHPASLTKMMTLYVAFQAIEN 56
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ L T + IS NA+ PS + G + ++ VKSAND A AI E L +E
Sbjct: 57 GEITLDTTVKISANAAAEQPSKLGLRSGQRIKFRYLIRAAAVKSANDAATAIGEILEGSE 116
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
F + M T+K+LG+S T F NAHG+ + GH +TARDM+ L + D+P Y + F K
Sbjct: 117 AAFARRMTRTAKSLGMSKTTFKNAHGLTEKGHLSTARDMSTLGRHLLYDYPDYYNLFSRK 176
Query: 192 GLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ K PNTN + + GADG+KTG+T A+GFN+VASA +G + +IA + G
Sbjct: 177 STDAGVKTVPNTNRRLLSNYRGADGIKTGYTRAAGFNLVASAERGQERIIATVFGGRSTA 236
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
TRN A LL MGF R + K Y + ++ V K+ + +
Sbjct: 237 TRNARVAELLDMGFKRAPSRVALRKPTKPAYGGSRASAKT---IRVVGAVKKSLRPKARA 293
Query: 311 KEAKDKESHF 320
+
Sbjct: 294 LRPETAPVLV 303
>gi|171060904|ref|YP_001793253.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptothrix cholodnii
SP-6]
gi|170778349|gb|ACB36488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptothrix cholodnii
SP-6]
Length = 389
Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats.
Identities = 91/325 (28%), Positives = 153/325 (47%), Gaps = 13/325 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ Y LLD + V+AE D PASLTKLMTAY+VF L++KK L
Sbjct: 28 AQTAPPEVAARAYLLLDVSANQVLAERDADATVEPASLTKLMTAYLVFQALRDKKLALEQ 87
Query: 79 PITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+T+S+ A S + G+ + +++ +K +IV+S ND V +AE++ T + FV
Sbjct: 88 ELTVSERAWRTGMTDTSRMYIQVGTKVKVEDLIKGMIVQSGNDATVQLAEAVGGTLENFV 147
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
MN ++ GL T F N G+ GH +TAR+++I++ R+ DFP Y+ +K
Sbjct: 148 VLMNRQAQAFGLKVTQFRNPEGLPAPGHVSTARELSIIASRLLVDFPAEARYYTLKEFTF 207
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG----DQSLIAVILGALDRNT 251
K PN N + DG+KTG+T +G+ ++A+A + + L++VILGA + +
Sbjct: 208 NKIKQPNRNLLLWRDPTVDGLKTGYTDNAGYCLIATAKRDLPAGQRRLVSVILGASSKES 267
Query: 252 RNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEV--PNISEEVCTTQKEIIN 305
R + LL+ G+ K + ++ + + V + E
Sbjct: 268 RATEAQKLLNWGYSAWDAIKLYDARQTITTAPVWKGASATAKLGTLVPLVVTVPRGEGSQ 327
Query: 306 YNTQMKEAKDKESHFIDFEKITLLK 330
T++ + + + LK
Sbjct: 328 LKTEITRTDPLLAPLTAGQPVGTLK 352
>gi|291618006|ref|YP_003520748.1| DacD [Pantoea ananatis LMG 20103]
gi|291153036|gb|ADD77620.1| DacD [Pantoea ananatis LMG 20103]
Length = 386
Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats.
Identities = 92/346 (26%), Positives = 147/346 (42%), Gaps = 15/346 (4%)
Query: 2 RQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
R+ L+ + + S PF + L+D TG V+ PD NPASLT
Sbjct: 4 RRLLITVTVFWASLAQADDMPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNPASLT 63
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
KLMT YVV + +KK +T+ K+A K G +++ + + +
Sbjct: 64 KLMTGYVVDRAIDQKKITRDDMVTVGKDAWAAGNPVFKGSSLMFLKPGDKLSVRDLSRGV 123
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
I+ S ND VA+A+ + ++ FV+ MN+ + LGL+ THF HG+ G +++A DMA
Sbjct: 124 IIDSGNDACVALADYVAGSQDNFVKLMNHYVEKLGLTNTHFETVHGLDAPGQFSSALDMA 183
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVA 230
LS I P + ++ K L G N N + DG+KTG T +GFNI+A
Sbjct: 184 KLSRAIIDGEPDFYAMYREKTLTWNGITQNNRNGLLWDNSLHVDGLKTGHTETAGFNIIA 243
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLS 286
S + G LIAV++G R + + LL G + + K + N
Sbjct: 244 SNVVGQHRLIAVVMGGKSAKGREEQARKLLVWGQNTFDTVQLFHAGKKIGSEHVWYGNPH 303
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +V + N + K ++ + +
Sbjct: 304 QVEVGTANDVYLSLPRSEIPNVKAKYVINRSDLEAPLKANENIGEI 349
>gi|254478669|ref|ZP_05092040.1| D-alanyl-D-alanine carboxypeptidase superfamily protein
[Carboxydibrachium pacificum DSM 12653]
gi|214035356|gb|EEB76059.1| D-alanyl-D-alanine carboxypeptidase superfamily protein
[Carboxydibrachium pacificum DSM 12653]
Length = 333
Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats.
Identities = 83/341 (24%), Positives = 144/341 (42%), Gaps = 24/341 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M+++ ++ + M F + S + ++D NTG V+ E AS TK
Sbjct: 1 MKKYFSLLLILMFFVTFSKVYGSDIPSVSAKAAIVMDQNTGRVLYEKNAHLKLPMASTTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + + L +T+S+ A+ S+ G + +++ L +++ S ND
Sbjct: 61 IMTLLIALE-----RGNLNDIVTVSQKAASVGGSSIWLSPGEKIDMESLLYGIMLNSGND 115
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWR 176
A AIAE + T + FV+ MN +K +G THF+ G+ HYTTA D+A+++
Sbjct: 116 AATAIAEHIGGTVENFVEMMNQKAKEIGAYNTHFVTPSGLDISIDDHYTTAYDLALITRY 175
Query: 177 IKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
++P++ K I + N N + + GADG+KTGFT +G +V+
Sbjct: 176 AFLNYPKFAEIVSTKEKTIPWEGKEWDRYLRNKNKLLWIYEGADGVKTGFTNKAGRCLVS 235
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
SA + + IAV+L + + S +L F K + ++
Sbjct: 236 SATREGRRFIAVVLNSP---PMWEDSMKILDYAFSRFKPFKVFERNDVVKKVKVEKGKIE 292
Query: 291 NISEEVCTT------QKEIINYNTQMKEAKDKESHFIDFEK 325
I V ++EI N + E+ EK
Sbjct: 293 EIEVAVEKDCIIPVSEEEIGKVNLEFHIPDKLEAPIKKGEK 333
>gi|260432451|ref|ZP_05786422.1| D-alanyl-D-alanine carboxypeptidase family protein [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416279|gb|EEX09538.1| D-alanyl-D-alanine carboxypeptidase family protein [Silicibacter
lacuscaerulensis ITI-1157]
Length = 475
Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats.
Identities = 99/294 (33%), Positives = 149/294 (50%), Gaps = 1/294 (0%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + + I + ++D TG V+ D +PASLTK+MT Y+ F
Sbjct: 13 LFLIAMIWIAAVAATQALAAPYAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFE 72
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
++ + L TP+TI+K A+ PPS + G + ++ VKSAND A AI +L
Sbjct: 73 AVRNGEITLDTPVTITKAAAAEPPSKLGLRAGQKIAFRYLIRAAAVKSANDAATAIGIAL 132
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M T+K +G+S T F NAHG+ + GH +TARDM L + D+P+Y +
Sbjct: 133 SGSEAAFARRMTRTAKAMGMSRTTFKNAHGLTEPGHLSTARDMTTLGRHLLYDYPEYYNL 192
Query: 188 FQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
F + K PNTN + + GADG+KTG+T A+GFN+VASA +G++ +IA + G
Sbjct: 193 FSRQSTYAGIKTVPNTNRRLLAAYKGADGIKTGYTRAAGFNLVASAKRGNERIIATVFGG 252
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
RN A LL +GF R I + Y N ++ + Q
Sbjct: 253 KSSAWRNAKVAELLDLGFRRAPSRAPIRKPSRPAYAGNAGLGDTQVARAIGAPQ 306
>gi|300023249|ref|YP_003755860.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525070|gb|ADJ23539.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
denitrificans ATCC 51888]
Length = 397
Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats.
Identities = 89/341 (26%), Positives = 158/341 (46%), Gaps = 15/341 (4%)
Query: 7 IIAMAMLSNIFP------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+IA+++L+ + P A T+K P L+D TG + + + D P PAS++KLM
Sbjct: 14 LIAISVLTAVGPEANPALAAEAAFTSKAPRAILIDAATGATLFQQHADEPAPPASMSKLM 73
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSN-----STFKKGSTMTLDNALKLLIVKS 115
T V+F +KE + T T+S NA + + +T+D ++ ++++S
Sbjct: 74 TLAVLFRAMKEGRIQKTDEFTMSVNAWRNGGAPSGTSAMMVPVNTKVTVDELIQGIVIQS 133
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND A+ +AE + + F + MN+ +K +GL+ + F NA G+ +ARD+A+L+
Sbjct: 134 GNDAAMCVAEGMAGSIPAFARMMNDEAKRIGLTKSTFTNASGLPDPQQVMSARDLAVLAR 193
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
I ++P Y F K + ++ N N + +GADG+KTG T A+GF +V SA+Q
Sbjct: 194 YIIDEYPDYYPVFAQKEFLYRKHRFINRNPLLFQNIGADGLKTGHTAAAGFGLVGSAVQD 253
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPN 291
+ LI V+ G + R + + LL+ GF + + + + +
Sbjct: 254 GKRLIVVVSGLEKADQRKEEAVKLLNWGFNSFNTVRLYDANEVIGQARVWGGKVWYVPLA 313
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +V T + E K +K +
Sbjct: 314 ANADVTFTVPKFPANQKISAEIVYKAPLKPPVKKGDQVATL 354
>gi|269958469|ref|YP_003328256.1| D-alanyl-D-alanine carboxypeptidase [Anaplasma centrale str.
Israel]
gi|269848298|gb|ACZ48942.1| D-alanyl-D-alanine carboxypeptidase [Anaplasma centrale str.
Israel]
Length = 380
Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats.
Identities = 79/343 (23%), Positives = 142/343 (41%), Gaps = 8/343 (2%)
Query: 1 MRQFLV-----IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+R+FL+ L+ P ++ K P+ + + + V+ E+ D P+S
Sbjct: 2 IRRFLLSFLVPAFCCLALAPARPSYALKMHTKAPHAIVYELGSRTVLFEHDADVAVAPSS 61
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KLMT Y+VF L + ++S++A + S++ K G + + + + V S
Sbjct: 62 MSKLMTLYLVFQHLHAGLIKMDDTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSS 121
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND +A+AE + ++++FV+ +N +K + L+ + F N G GH + RD+ LS
Sbjct: 122 GNDACIALAEGVSGSQEQFVEDINGLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSV 181
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
RI DFP+Y H F K G N N + +G DG+KTG T +G+ I ASA +
Sbjct: 182 RIFEDFPEYYHVFGEKQFTYNGVTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQKD 241
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNI 292
++ + V+ G R + LL F + + V
Sbjct: 242 NRRVFVVVNGLKTETERAYETKRLLLYAFNRFETKVVFPAGSVVGEVKVWNGRKGTVQMH 301
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + K + +K + +
Sbjct: 302 VRDDVVISYPRDLSKSVKAFVSYKSTVAAPVKKGQEIGTLSVQ 344
>gi|238755056|ref|ZP_04616404.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC
29473]
gi|238706760|gb|EEP99129.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia ruckeri ATCC
29473]
Length = 403
Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats.
Identities = 91/354 (25%), Positives = 146/354 (41%), Gaps = 24/354 (6%)
Query: 3 QFLVIIAMAMLSNIFPFLSIA-------------ETNKLPYYTLLDTNTGHVIAENYPDH 49
+F+ IA+ + I Y L+D N+G V+AE D
Sbjct: 8 RFIKSIALGTVIVISATSVANADDVNMKTMIPGVPQIDAEAYVLIDYNSGKVLAEMNADA 67
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMT 103
NPASLTK+MT+YV+ +K K +T+ K+A K G +
Sbjct: 68 RRNPASLTKMMTSYVIGQAIKSGKIGPEDMVTVGKDAWATGNPVFQGSSLMFLKPGDQVP 127
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ + + ++S ND VA+A+ + ++ FV MNN LGL THF HG+ G
Sbjct: 128 VSKLTRGINLQSGNDACVAMADYVAGSQDSFVNLMNNYVNALGLKNTHFKTVHGLDAEGQ 187
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTC 222
Y++ARDMA++ + D P ++ K + N N T L DG+KTG T
Sbjct: 188 YSSARDMALIGQALIRDVPDEYAIYKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTD 247
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----K 278
A+G+N+VASA +G LI+ +LG R S LL+ GF + +
Sbjct: 248 AAGYNLVASATEGQMRLISAVLGGHTYKGRETESKKLLTWGFRFFETVAPLKVGKEFASE 307
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + ++V T + + + K ++ +
Sbjct: 308 PVWFGDTDRVQLGVDQDVYLTIPRGRMKDLKASYVLNTPEIHAPLAKNQVVGSI 361
>gi|294676715|ref|YP_003577330.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacter capsulatus SB
1003]
gi|294475535|gb|ADE84923.1| D-alanyl-D-alanine carboxypeptidase-1 [Rhodobacter capsulatus SB
1003]
Length = 538
Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats.
Identities = 94/290 (32%), Positives = 143/290 (49%), Gaps = 6/290 (2%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++A+ + + ++D TG V+ E D +PASLTK+MT Y+ F
Sbjct: 12 LLAIFLAVLPVALSAAPF-----AAYVMDARTGEVLYEKNADTRLHPASLTKMMTLYIAF 66
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
++ +A L T +T+S NA+ PS + G + L ++ +KSAND A AI +
Sbjct: 67 QAIESGEASLDTMVTVSANAAGQAPSRLGLRTGQKIALRYLIRGAAIKSANDAAAAIGDF 126
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
L E F MN T+K LG+ T F NA+G+ + GH +TA DM+IL + DFPQY +
Sbjct: 127 LEGDEAHFAARMNRTAKALGMKNTTFKNANGLTKAGHLSTAHDMSILGRHLLYDFPQYYN 186
Query: 187 YFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
F + + NTN + GADG+KTG+T +GFN+ ASA +G++ +IA I G
Sbjct: 187 LFSRRTADAGIAHVANTNRRFLDAYDGADGIKTGYTVPAGFNLTASAQRGNKRIIATIFG 246
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
RN A L+ +GF + N +++ E
Sbjct: 247 GTSPAARNSKMAELMDLGFERAPGKVNAQKPEPPMLMANAESDIAGPQVE 296
>gi|294671129|ref|ZP_06735984.1| hypothetical protein NEIELOOT_02837 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307237|gb|EFE48480.1| hypothetical protein NEIELOOT_02837 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 430
Score = 195 bits (494), Expect = 9e-48, Method: Composition-based stats.
Identities = 95/321 (29%), Positives = 146/321 (45%), Gaps = 5/321 (1%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P S A Y + D +G ++ D PASLTKLMTAY+ F L+E +
Sbjct: 67 PVPQASTAPEIAAAAYLVQDLQSGQILTGKNLDKQIEPASLTKLMTAYLAFKALEEGRLK 126
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
T +T S+ A S G + + + LK LIV+S ND AV +AE+L +E F
Sbjct: 127 AETMLTPSETAWRAEGSRMFLNAGKPVAVGDLLKGLIVQSGNDAAVTLAEALGGSEVGFA 186
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
MN +K LG+S THF+NA G+ GH +T RD+AILS I D+P+Y + ++ +
Sbjct: 187 DMMNAEAKRLGMSKTHFVNATGLPSDGHMSTVRDLAILSAAIIKDYPKYYPIYSMQSFKY 246
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ PN N + DG+KTG T +G+N++AS+ + + +++V++G R
Sbjct: 247 NNIEQPNRNLLLYRDPNVDGLKTGHTNTAGYNLIASSKRNGRRVVSVVVGTESIEARAGE 306
Query: 256 SASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
S+ LL+ K + Y+ N E V T +
Sbjct: 307 SSKLLNWALQAFDTPKAYDANTPVSSVKVYKGQEDNVNIGFLEPVYLTIPHGEGNKVKPV 366
Query: 312 EAKDKESHFIDFEKITLLKNK 332
+ + EK +L
Sbjct: 367 L-ETVQPVLAPIEKGQVLGKL 386
>gi|283834062|ref|ZP_06353803.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
29220]
gi|291070205|gb|EFE08314.1| D-alanyl-D-alanine carboxypeptidase DacA [Citrobacter youngae ATCC
29220]
Length = 403
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 85/330 (25%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K
Sbjct: 32 LNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADSRRDPASLTKMMTSYVIGQAMKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
T +T+ +A K G + + ++ + ++S ND VA+A+
Sbjct: 92 FKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFA 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN+ LGL THF HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAMIGQALIRDVPNEYSI 211
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K G + N N + DG+KTG T +G+N+VASA +G LI+ ++G
Sbjct: 212 YKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + N + ++V T
Sbjct: 272 RTYKGRETESKKLLTWGFRFFETVNPLKVGKEFASEPAWFGNTDRASLGVDKDVYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +K ++
Sbjct: 332 GRMKDLKASYVLNTTELHAPLQKNQVVGTI 361
>gi|190571728|ref|YP_001976086.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
gi|190358000|emb|CAQ55464.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
Length = 368
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 83/339 (24%), Positives = 152/339 (44%), Gaps = 6/339 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M LV + + + + + S K +LD + I E+ P+S++KLM
Sbjct: 1 MLSKLVTLLLIFIFPFYSY-SYQFRTKAKQAIVLDLASDSFIFEHNSREKMAPSSMSKLM 59
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T YV F +LK + +S+ A E S+ K+G +T+ L+ + + S ND
Sbjct: 60 TLYVAFDYLKAGIIKMEDKFRVSRKAWERKGSSMFLKEGQFVTVKELLEGITIASGNDAC 119
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+AE + +E+ FV MN +++L L+ +HF+N+ G H+ +A+D+ L+ RI TD
Sbjct: 120 IALAEGIAGSEENFVAEMNEVAQDLNLNDSHFVNSSGWPDENHFMSAKDLVTLAKRIFTD 179
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+Y F + L N N + +G DG+KTG T A G+ I+ SA + D+ +
Sbjct: 180 FPEYYDLFSEQYLTYNDIVQKNKNLLLFHDIGVDGLKTGHTSAGGYGIIVSAKRNDRRIF 239
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEV 296
AV+ G R + + L+ + +K + ++ +V
Sbjct: 240 AVVNGLDTEKERIEEAKRLIQYSLNHFNTKKIFAKDSVVEEINIVYGKDKKVPVTVANDV 299
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T ++ +++ + K+ +K + +
Sbjct: 300 TITYNRRLHDKIKVRI-EYKDMVPAPIKKGQEVGKIFVE 337
>gi|75675657|ref|YP_318078.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
winogradskyi Nb-255]
gi|74420527|gb|ABA04726.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
winogradskyi Nb-255]
Length = 413
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 76/317 (23%), Positives = 132/317 (41%), Gaps = 11/317 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P LL+ +G V+ E D P+S+ KLMTA VVF+ + + + LT IS+
Sbjct: 50 ETSAPTAILLEAKSGSVLFEKNADELRAPSSMMKLMTAEVVFNAVTKGEIKLTDEYVISE 109
Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
N S S + + + L+ I++S ND +A+AE + E F + M
Sbjct: 110 NTWRKGGAPSGGSTMFAAINSRIPVQDLLRGAIIQSGNDSCMALAEGIAGHESAFAEKMT 169
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ LG+S + F N+ G+ + T R++A L+ I +P + F + +
Sbjct: 170 ARARELGMSRSTFANSSGLPHPDNKMTVRELAALARHIILTYPDFYKLFGEREFTWNKIR 229
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N + GADG+KTG+T G+ +V S +Q LI V+ G + R + L
Sbjct: 230 QSNRNALLAAMDGADGLKTGYTKEGGYGLVGSVVQNGTRLIVVVNGLESADYRLTAARKL 289
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT------QKEIINYNTQMKEA 313
L GF N R Y + + ++ V + ++ +
Sbjct: 290 LEWGFRNFEVRTLFAAEQPIGYAKVFGGDSGSVQVAVSDPVQVMVQKNGGDRLIARIVYS 349
Query: 314 KDKESHFIDFEKITLLK 330
+ + I +++
Sbjct: 350 GPVRAPIAPGQPIGVVR 366
>gi|197303542|ref|ZP_03168581.1| hypothetical protein RUMLAC_02264 [Ruminococcus lactaris ATCC
29176]
gi|197297540|gb|EDY32101.1| hypothetical protein RUMLAC_02264 [Ruminococcus lactaris ATCC
29176]
Length = 402
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 97/363 (26%), Positives = 158/363 (43%), Gaps = 29/363 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI------------------AETNKLPYYTLLDTNTGHVI 42
+++ L ++ + + + F + A P L++ TG V+
Sbjct: 4 IKKLLAVMLICIQTLQFSMVPNVLAEETTTTPGTEQTSDTAVEVTAPSAILMEMTTGTVL 63
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
E D PAS+TK+MT ++F L E K L +T S+ AS S + G
Sbjct: 64 YEKDADTARPPASVTKVMTMLLIFDALAEGKIQLEDEVTTSEYASSMGGSQVFLETGEKQ 123
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T++ LK + V SAND VA+AE + E++FV+ MN ++ LG+ THF+N +G+ G
Sbjct: 124 TVETLLKCISVASANDACVAMAEYISGNEEEFVRQMNLRAEGLGMKHTHFVNCNGLDAEG 183
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGAD 214
H T+ARD+A++S + +P+ +Y I I NTN + + A
Sbjct: 184 HETSARDIALMSRELLLKYPEIHNYCTIWMENITHTTSKGSSEFGLTNTNKLIRQYEYAT 243
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN---KTDRK 271
G+KTG T + F + A+A + SLIAVI+GA D R K + +LL+ GF TD
Sbjct: 244 GLKTGSTGKAKFCVSATAEKNGVSLIAVIMGAEDSKARFKDAVTLLNYGFGKCQMYTDEN 303
Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ + ++ N N + + +K +
Sbjct: 304 MPSLDPISVTGGIQESISLEYEKKFTYLDTTGANLNAVTSRLQIPDKVNAPVKKGDTVGQ 363
Query: 332 KIT 334
+I
Sbjct: 364 RIY 366
>gi|260892753|ref|YP_003238850.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4]
gi|260864894|gb|ACX52000.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4]
Length = 381
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 75/346 (21%), Positives = 141/346 (40%), Gaps = 11/346 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR+ + + + ++ S A + L++ + G ++ E AS
Sbjct: 1 MRRKALFLTTLLAFSLLVANSRACASPFLSTTAKSAVLMEAHHGQILGEKELHRKQPIAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+ KLMT + +++ K L +T S++A+ S M+ + L + S
Sbjct: 61 MVKLMTLLLAVEAVEQGKVRLADKVTASEHAASMGGSQIFLAPEEVMSFRDLLIAVATAS 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND +VA+AE + +E+ FV MN ++ LG+ TH++NA G+ G Y+TA D A+L
Sbjct: 121 ANDASVAVAEHVAGSEEAFVAAMNAKARALGMENTHYVNATGLPAEGQYSTAYDQALLLR 180
Query: 176 RIKTDF-PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + L K NTN + + G KTG+T +G+ + ++A +
Sbjct: 181 EALKHPLFLELAQIKEYSLRGGKFKLYNTNKLLWWYRGTIAGKTGWTEEAGYCLASAAKR 240
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVP 290
+LI V+LG + + + S + + GF + + +
Sbjct: 241 QGLTLITVVLGCPEPRSHFRESIKIYNWGFARYQAVPLLPEGARVATLPVEKGMEDRVDI 300
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
S EV + ++A+ S ++ + I K+
Sbjct: 301 LTSREVVLVVPRGED-KGITQQAELPRSLKAPLQQGEKVGYWIVKQ 345
>gi|28199163|ref|NP_779477.1| penicillin-binding protein 6 precursor [Xylella fastidiosa
Temecula1]
gi|182681894|ref|YP_001830054.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M23]
gi|28057261|gb|AAO29126.1| penicillin-binding protein 6 precursor [Xylella fastidiosa
Temecula1]
gi|182632004|gb|ACB92780.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M23]
gi|307578148|gb|ADN62117.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 396
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 84/317 (26%), Positives = 154/317 (48%), Gaps = 11/317 (3%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-- 88
+ ++D +G V+A PASLTK+MT+YV+ + +K K + +++NA
Sbjct: 47 WVVMDYASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKG 106
Query: 89 ---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S S F T L++ + +IV+S ND A+A+A+ + +E+ F MN+ ++ +
Sbjct: 107 GAGTDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAQHVAGSEEAFASLMNSYAQRI 166
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
G+ +HF++A G+ GHY++A DMA+L + DFP+ Y ++K L + G K N N
Sbjct: 167 GMKNSHFVDATGLSAEGHYSSAYDMALLGRALIRDFPETYAYNKVKELVVNGIKQSNRNL 226
Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF
Sbjct: 227 LLWRDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFR 286
Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT------QKEIINYNTQMKEAKDKESH 319
+ +V + V + + ++ ++ E+
Sbjct: 287 FFETHTLYEPGKVVTKHKIWKGQVSEVQLGVPRPLFVTVQRGRYNDLKPSIEVPRNLEAP 346
Query: 320 FIDFEKITLLKNKITKK 336
+ + +K + K
Sbjct: 347 IKPGQSVGKVKVTLDGK 363
>gi|110678603|ref|YP_681610.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter
denitrificans OCh 114]
gi|109454719|gb|ABG30924.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter
denitrificans OCh 114]
Length = 485
Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats.
Identities = 104/322 (32%), Positives = 160/322 (49%), Gaps = 4/322 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L A+ + I P + A ++D TG V+ D +PASLTK+MT Y+
Sbjct: 13 LYAFAVLWMLVILPLTAAAAPYAA---FVMDARTGEVLHSRNADTRLHPASLTKMMTLYI 69
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F ++ + L T + IS+ A+ PPS K G + ++ +KSAND A AI
Sbjct: 70 AFQAVENGEISLDTKVKISRFAAAEPPSKLGLKSGQRIAFRYLIRAAAIKSANDAATAIG 129
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E+L +E F + MN T+K LG++ T F NAHG+ + GH +TARDM++L + D+P+Y
Sbjct: 130 EALEGSEAAFARRMNRTAKELGMTRTTFKNAHGLTESGHMSTARDMSLLGRHVLYDYPEY 189
Query: 185 MHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ F + + NTN + + GADG+KTG+T A+GFN+VASA +G + +IA +
Sbjct: 190 YNLFSRRSTHAGVRDVANTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGQERIIATV 249
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
G RNK A LL MGF R + K Y + + + + +I
Sbjct: 250 FGGTSTIARNKRVAELLDMGFKRAPSRATVRKPKKPSYFATRHQGTRDATIMTASLRPQI 309
Query: 304 INYNTQMKEAKDKESHFIDFEK 325
++ + E E+
Sbjct: 310 RPLVAAVESPVNAEDIIAAVEQ 331
>gi|238790457|ref|ZP_04634227.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii
ATCC 33641]
gi|238721483|gb|EEQ13153.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii
ATCC 33641]
Length = 383
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 87/328 (26%), Positives = 139/328 (42%), Gaps = 11/328 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 12 VNLKTMIPGVPQIDAEAYVLIDYNSGKVLAEMNADVRRNPASLTKMMTSYVIGQAIKAGK 71
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G + + + + ++S ND VA+A+ +
Sbjct: 72 IGPEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 131
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN LGL THF HG+ G +++ARDMA++ + D P
Sbjct: 132 AGSQDSFVNLMNNYVNALGLKNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAI 191
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA G LI+ +LG
Sbjct: 192 YKEKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGG 251
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 252 HTFKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDSDRVQLGVDKDVYLTIPR 311
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + K ++
Sbjct: 312 GRMKDLKASYVLNTPEIHAPLAKNQVVG 339
>gi|110802732|ref|YP_699090.1| penicillin-binding protein dacf precursor [Clostridium perfringens
SM101]
gi|110683233|gb|ABG86603.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens SM101]
Length = 402
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 84/357 (23%), Positives = 158/357 (44%), Gaps = 22/357 (6%)
Query: 1 MRQFL-------VIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++++ + +++ + + P + A + L++ +TG +I E + +
Sbjct: 1 MKKYIRKIAAFSIFLSLFSIVSSVPVKAEEAIEVEARSALLMEASTGKIIYEKNANEKFA 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS+TK+MT + + + L+ IT+S+ A + S G T++ +K +
Sbjct: 61 PASVTKVMTMLLAMEKVDRGEIKLSDQITVSETAKKMGGSTMLLDVGEVRTVEEIIKGIG 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND AVA+AE L +E FV+ MN ++ LG+ T F N G+ GH +TA D++I
Sbjct: 121 IASGNDAAVAMAEYLGGSESGFVEMMNKRAEELGMKNTTFKNCTGLPIEGHLSTAYDISI 180
Query: 173 LSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+S + + I + N N V F G DG+KTGFT + + I
Sbjct: 181 MSRELLKHPTILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTNDAKYCI 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQN 284
A+A + +++VI+GA RN+ ++ L++ GF ++ + Q
Sbjct: 241 SATATRDGVRMLSVIMGAPTFKIRNRDASMLMNYGFSKFESKQVATKDGEIEQIPMNQTG 300
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMK------EAKDKESHFIDFEKITLLKNKITK 335
+ ++ + ++ + K + K KE I + + L + K
Sbjct: 301 DKFIIGKAKNDLTLVCPKGMSDKIEKKVVLDESKKKIKEFDTIGYCEYYLDGELLGK 357
>gi|157369441|ref|YP_001477430.1| D-alanyl-D-alanine carboxypeptidase fraction A [Serratia
proteamaculans 568]
gi|157321205|gb|ABV40302.1| Serine-type D-Ala-D-Ala carboxypeptidase [Serratia proteamaculans
568]
Length = 428
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 87/330 (26%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE D +PASLTK+MT+YV+ LK K
Sbjct: 57 VNIKTMIPGVPQIDAESYVLIDYNSGKVLAEMNADARRDPASLTKMMTSYVIGQALKAGK 116
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ ++A K G + + + + ++S ND VA+A+ +
Sbjct: 117 IGQEDMVTVGQDAWATGNPVFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 176
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN LGL THF HG+ G Y++ARDMA++ + D P
Sbjct: 177 AGSQDAFVNLMNTYVSKLGLQNTHFQTVHGLDAQGQYSSARDMALIGQALIRDVPDEYAI 236
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA +G LI+ +LG
Sbjct: 237 YKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATEGQMRLISAVLGG 296
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 297 RTYKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDADRVELGVDKDVYLTIPR 356
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + K ++ +
Sbjct: 357 GRMKDLKASYVLNTPEIHAPLAKNQVVGSI 386
>gi|92119190|ref|YP_578919.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
X14]
gi|91802084|gb|ABE64459.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
X14]
Length = 455
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 107/297 (36%), Positives = 169/297 (56%), Gaps = 3/297 (1%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+++A ++ I P + T + L++ +TG V+ +PW PASLTK+MTAYV
Sbjct: 23 IVLAAGLIVAIAPLRAAHAT---EAHLLIEADTGKVLEAENATYPWYPASLTKMMTAYVT 79
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+ +K+ + L T T+S A+ PS F+ G+ +T+DNALK+++VKSAND+AV +AE
Sbjct: 80 LTAVKQGRITLDTLFTVSPTAAAQSPSKMGFRPGTQVTVDNALKMMLVKSANDMAVVLAE 139
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+ + F MN T++ LG++ T ++N +G+ G T+ARD+ IL+ I D P+Y
Sbjct: 140 GVGGSIDGFSAEMNATAQRLGMTQTSYVNPNGLPADGQITSARDLGILARAIIHDLPEYE 199
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
++ +I + + N N +G F GADG KTGF CASG+N+V SA Q + LIAV+LG
Sbjct: 200 YFMRIPSIRYGRRVTRNFNKLIGRFPGADGFKTGFICASGYNLVGSATQNGKRLIAVVLG 259
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
A R A +L GF N T + ++ PN+ +E+C +++
Sbjct: 260 ASSGTMRAVRVAQMLERGFANNTLSWLRPALGTVDKLAPIAAAPPNLRDEMCGPKRK 316
>gi|56961794|ref|YP_173516.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
gi|56908028|dbj|BAD62555.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
Length = 429
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 74/366 (20%), Positives = 135/366 (36%), Gaps = 39/366 (10%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ + +L I P + + T +++ +TG ++ E D AS+TK+MT Y+V
Sbjct: 4 LAMLAFVLGPIKPASAQSLTVDASAAIVVNADTGQILFEQNSDEQLAIASMTKMMTEYIV 63
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+ +TI+ + +K L A A A
Sbjct: 64 LESIANGDISWEDEVTITDHLLPLSHQRELSNVPLRQDYTYTVKDLYESMAIYSANASTM 123
Query: 126 ----SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTA 167
+ TE +FV MN ++ LGL F+NA G+ +A
Sbjct: 124 ALAEHVAGTEAQFVAKMNEKAEELGLEKYEFINASGLNNADLQGEHPEGTPADGETTLSA 183
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMKT 218
R +A L++ + DFP+ + + N NW + G DG+KT
Sbjct: 184 RSVAQLAYHLLKDFPEVLDTASVPEAVFDSGPDEKIDMQNWNWMLPNSPHYYEGVDGLKT 243
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
G+T A+G + A+A + LI V++G R+ R + LL GF + + I+ +
Sbjct: 244 GYTDAAGNSFTATAERDGVRLITVVMGTDTRDDRFNETKKLLDYGFSQFEEHRIIDAGTE 303
Query: 279 D-----FYQQNLSNEVPNISEEVC---TTQKEIINYNTQMKEAKDKESH----FIDFEKI 326
+ EV ++ + + NY+ +++ + K + E+
Sbjct: 304 PEGGVVPVARGKEKEVQLVTNRDLTFMLGKGQNENYSVEIELDESKTNENGELVAPIEEG 363
Query: 327 TLLKNK 332
+
Sbjct: 364 ETVGTL 369
>gi|169333947|ref|ZP_02861140.1| hypothetical protein ANASTE_00333 [Anaerofustis stercorihominis DSM
17244]
gi|169259512|gb|EDS73478.1| hypothetical protein ANASTE_00333 [Anaerofustis stercorihominis DSM
17244]
Length = 392
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 87/353 (24%), Positives = 157/353 (44%), Gaps = 19/353 (5%)
Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAE--------TNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ + +I++ +++ F+ E + L+D TG V+ E D
Sbjct: 2 LKKIVSLILSFSLIFTSSSFVFAKEESKNEVDMDIQSKSVVLMDVGTGKVLYEKNKDEKL 61
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS+TK+MT ++ + K ++ +TIS AS+ S ++G ++D L +
Sbjct: 62 PLASVTKVMTILLILEAVNNKTINMSDMVTISDYASKMGGSQLFMEEGEMRSVDELLNAI 121
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
I++SAND A+ E + + +KFV MN+ +K LG+ +HF+N++G+ HY++A D+A
Sbjct: 122 IIESANDACAAMGEFVGGSIEKFVLMMNDRAKELGMKNSHFVNSNGLPADDHYSSAYDIA 181
Query: 172 ILSWRIKTDFP------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+++ + + +I K + NTN + DG+KTG+T +G
Sbjct: 182 LMTKEVCKYPDIFKISSTWQKTIKIGKKNDKERTLSNTNKLLRMNDKVDGLKTGYTADAG 241
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFY 281
I A+ +GD LIAVIL A D TR + LL+ GF + +
Sbjct: 242 HCISATGKEGDLRLIAVILHAPDSKTRFAEANKLLNYGFSTYKAENVVEKDKAVADVEVN 301
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ N + + T + N + D + +K L + I
Sbjct: 302 KGNKDKVSAVAKDNISTLMNKNENKEYKSDVKLDNKKINAPVKKGDKLGSVIV 354
>gi|83589906|ref|YP_429915.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
ATCC 39073]
gi|83572820|gb|ABC19372.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
ATCC 39073]
Length = 385
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 90/335 (26%), Positives = 147/335 (43%), Gaps = 19/335 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L ++ L + + P L++ +TG V+ E PAS TK+MTA
Sbjct: 10 ILALVVFCFLGSSPVKAADELQITAPAAVLMEASTGQVLYERGAREKRPPASTTKIMTAI 69
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + L TPI +S+NA+ P ++ +KG +TL + +K +++S ND VAI
Sbjct: 70 LALELGR-----LDTPIKVSENAATTPGASIYLQKGEVLTLGDLVKGALLESGNDATVAI 124
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE L +E F MN + LG THF N +G+ GHYT+A D+A+++ +
Sbjct: 125 AEGLAGSEAGFAFLMNRKAWLLGARTTHFNNPNGLPDPGHYTSAYDLALIARYALGNPVF 184
Query: 184 YMHYFQIKGL---EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
++ + NTN + ++ GADG+KTG T A+G +VASA +G + LI
Sbjct: 185 RRLVATVEDQIPGPDGVRHLYNTNRLLESYPGADGVKTGTTAAAGQCLVASATRGGRQLI 244
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNEVPNISEE 295
AV+LG+ D R + +LL GF N + + + + P +
Sbjct: 245 AVVLGSAD---RYGDTRTLLDYGFKNFYCEMVKAGEPLGQVYIPNGEMTSIGVAPAMDAG 301
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ + + K L
Sbjct: 302 FTAPLARSGQLEKKVLLPR---AARAPVRKGQELG 333
>gi|121535743|ref|ZP_01667545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
carboxydivorans Nor1]
gi|121305642|gb|EAX46582.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
carboxydivorans Nor1]
Length = 378
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 79/342 (23%), Positives = 145/342 (42%), Gaps = 19/342 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+R+ L+ +A+L S +++ +TG V+ + PAS TK+M
Sbjct: 2 LRRGLIPWLIALLVLPNTGWSAPLDLTAKSAIVIEASTGKVLYAKDAETKRYPASTTKMM 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T V L +T S NA+ S+ G + L + L +++ S ND
Sbjct: 62 TLIVALEH-----GNLNDIVTTSANAASTEGSSLWLAPGEQLKLLDMLYGVMLVSGNDAT 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + + +KF + M + +G + T+F N+ G+ HYTTA D+A ++ +
Sbjct: 117 VAVAEHISGSVEKFARLMTEKAHAIGATNTNFTNSSGLPDPNHYTTAHDLAKIAAYGYKN 176
Query: 181 FPQ-----YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
H + + N N + + GA+G+KTG+T A+G +V+ A +
Sbjct: 177 PFFAEIVSTKHKVIPWPGKDHDRDLYNENKMLWLYDGANGVKTGYTEAAGPCLVSGAKRN 236
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYN------KTDRKKINYIIKDFYQQNLSNEV 289
+ LIAV+L + + S +LL GF + + + +Q V
Sbjct: 237 NIQLIAVVLDS---ERMWEESMALLDYGFKQVKPMVLFNQGDIVKTVRVNNGKQETVRLV 293
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
S V + + + T ++ E+ + +K+ ++K
Sbjct: 294 TKASSIVPVSADDKDQFRTVVEAPAKLEAPVVAGQKVGVVKT 335
>gi|238762884|ref|ZP_04623852.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii
ATCC 33638]
gi|238698895|gb|EEP91644.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia kristensenii
ATCC 33638]
Length = 403
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 88/328 (26%), Positives = 139/328 (42%), Gaps = 11/328 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 32 VNLKTMIPGVPQIDAEAYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G + + + + ++S ND VA+A+ +
Sbjct: 92 IGPEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN K LGL T F HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAI 211
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA G LI+ +LG
Sbjct: 212 YKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 272 HTYKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDSDRVQLGVDKDVYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + K ++
Sbjct: 332 GRMKDLKASYVLNTPEIHAPLAKNQVVG 359
>gi|297183970|gb|ADI20090.1| d-alanyl-d-alanine carboxypeptidase [uncultured alpha
proteobacterium EB080_L06A09]
Length = 481
Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats.
Identities = 101/318 (31%), Positives = 156/318 (49%), Gaps = 7/318 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
I+ + +L ++D TG V+ D +PASLTK+MT Y+
Sbjct: 9 FILVVVLLFTGVSVYGAP-----YAALVMDARTGEVLHSRNADTRLHPASLTKMMTLYLA 63
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F ++ L + +S+NA+ PPS + G + + + ++ VKSAND A A+ E
Sbjct: 64 FKAVESGHLSLDEKVKVSRNAASEPPSKLGLRTGMRVKVRHLIRAAAVKSANDAATALGE 123
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
++ +E KF M +K LG+ T F NAHG+ GH +TARDM+IL + DFP Y
Sbjct: 124 AIAGSEVKFTTLMTAQAKALGMKRTTFKNAHGLTAKGHLSTARDMSILGRHLMYDFPDYY 183
Query: 186 HYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ F + + + PNTN + + GADG+KTG+T A+GFN+V+SA +G++ +IA +
Sbjct: 184 NLFSRRNTDAGLRTVPNTNRRLLANYKGADGIKTGYTNAAGFNLVSSAQRGNKRIIATVF 243
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE-EVCTTQKEI 303
G +RN A LL MGF + I + N V I V I
Sbjct: 244 GGRTWKSRNARVAELLDMGFNRTPKKYTSTAIPARPTRGNQLESVALILPGNVSIKSPRI 303
Query: 304 INYNTQMKEAKDKESHFI 321
I+ + + K + + I
Sbjct: 304 ISSSPRPKIRPNFDKKII 321
>gi|320539093|ref|ZP_08038764.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
protein 5) [Serratia symbiotica str. Tucson]
gi|320030731|gb|EFW12739.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
protein 5) [Serratia symbiotica str. Tucson]
Length = 403
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 88/330 (26%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE D +PASLTK+MT+YV+ LK K
Sbjct: 32 VNIKTMIPGVPQIDAAAYILIDYNSGKVLAEMNADARRDPASLTKMMTSYVIGHTLKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ ++A + G +++ + + ++S ND VA+A+ +
Sbjct: 92 IGQEDLVTVGQDAWATGNPVFKGSSLMFLRPGDRVSVAKLSRGINLQSGNDACVAMADYV 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN LGL THF HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDAFVNLMNTYVNKLGLQNTHFQTVHGLDAQGQYSSARDMALIGQALIRDVPDEYAI 211
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA G LI+ +LG
Sbjct: 212 YKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATAGQMRLISAVLGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + N + ++V T
Sbjct: 272 RTYKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGNDDRVDLGVDKDVYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + K ++ N
Sbjct: 332 GRMKDLKASYVLNTPEIHAPLSKNQVVGNI 361
>gi|312797424|ref|YP_004030346.1| D-alanyl-D-alanine serine-type carboxypeptidase [Burkholderia
rhizoxinica HKI 454]
gi|312169199|emb|CBW76202.1| D-alanyl-D-alanine serine-type carboxypeptidase (EC 3.4.16.4)
[Burkholderia rhizoxinica HKI 454]
Length = 403
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 84/333 (25%), Positives = 146/333 (43%), Gaps = 15/333 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ L+D ++ +A D PASLTKLMT+Y+VF LK KK +
Sbjct: 37 AQVPPPAVNARSWVLVDASSAQTLASANADERVEPASLTKLMTSYLVFDALKTKKISMDQ 96
Query: 79 PITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ + S + +T+ + + +IV+S ND A+A+AE + +E FVQ
Sbjct: 97 TVMPGEAVRRVGTDESRMFIEANKPVTVHDLVYGMIVQSGNDAAIALAELVGGSEAHFVQ 156
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN ++ LG+ TH+ + +G+ HYT+A D+A+LS + D+P+Y F +K
Sbjct: 157 MMNEAAQKLGMKNTHYADVNGMPNPQHYTSAADLAVLSAHLIRDYPEYYSIFAVKDFTYN 216
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDR 249
K N N + DG+KTG T A+G+ ++ASA + + L++V++G
Sbjct: 217 KIKQLNRNRLLWIDPTVDGLKTGHTKAAGYCLIASAKRPLPGVPDASRRLVSVMMGEPKE 276
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVP---NISEEVCTTQKEI 303
+ R + S +L+ G+ + I + L N VP + + +
Sbjct: 277 HDRTQDSLKMLNYGYTAYDTVRLYKANQVIDSPRVYKGLQNAVPVGVKSDQYITVPKGVG 336
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ D + + +K K
Sbjct: 337 DKIKPVLERHGPLVGPIADGQVVGTVKVVADGK 369
>gi|332091585|gb|EGI96666.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae
155-74]
Length = 301
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 88/293 (30%), Positives = 141/293 (48%), Gaps = 15/293 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L+I A + N+ PF + L+D TG ++ N
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ LIV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++
Sbjct: 121 LSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
A D+A+LS I P++ H + K L G N N + DG+KTG T +G
Sbjct: 181 AYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
FN++AS + G + LIAV++GA R + + LL G N T + ++ K
Sbjct: 241 FNLIASGVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKK 293
>gi|213619044|ref|ZP_03372870.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 305
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 85/301 (28%), Positives = 138/301 (45%), Gaps = 14/301 (4%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
++ASA+ G + LIAV++GA R + + LL G N + ++ K ++
Sbjct: 245 LIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSERIWYG 304
Query: 288 E 288
E
Sbjct: 305 E 305
>gi|283785832|ref|YP_003365697.1| penicillin-binding protein 6B [Citrobacter rodentium ICC168]
gi|282949286|emb|CBG88897.1| penicillin-binding protein 6B [Citrobacter rodentium ICC168]
Length = 390
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 86/316 (27%), Positives = 138/316 (43%), Gaps = 11/316 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
F + + L+D TG ++ NPASLTKLMT YVV + +
Sbjct: 29 FAPQPPAIEAGSWVLMDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDD 88
Query: 79 PITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+T+ ++A K+G +++ + + LIV S ND VA+A+ + +
Sbjct: 89 IVTVGRDAWAKDNPVFVGSSLMFLKQGDRVSVRDLSRGLIVDSGNDACVALADYVAGGQP 148
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MNN K L L THF HG+ G +++A D+A+LS I P++ H + K
Sbjct: 149 QFVAMMNNYVKKLHLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKS 208
Query: 193 LEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
L G N N L DG+KTG T +GFN++ASA+ G + LIAVI+GA
Sbjct: 209 LTWNGITQYNRNGLLWDKSLNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVIMGAQSPKG 268
Query: 252 RNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R + + LL G N + + + + + ++ + +
Sbjct: 269 REEQARKLLHWGQQNFDTVQILRNGKQVGTERIWYGDKEKIALGTEQDFWMALPKTEIPH 328
Query: 308 TQMKEAKDKESHFIDF 323
+ K D ++
Sbjct: 329 IKAKYVLDTKALEAPI 344
>gi|254438085|ref|ZP_05051579.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter
antarcticus 307]
gi|198253531|gb|EDY77845.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter
antarcticus 307]
Length = 471
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 97/300 (32%), Positives = 145/300 (48%), Gaps = 14/300 (4%)
Query: 1 MRQ---------FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L++ + M + + A ++D TG ++ D
Sbjct: 1 MKRRIQHPALAGILLLFTLLMAALAPVTGNSAP----YAAMVMDARTGEILHSRNADTQL 56
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
+PASLTK+MT Y+ F ++ + L ITI+ A+ P S G + ++
Sbjct: 57 HPASLTKMMTLYIAFQAVERGEISLDDMITITPLAASEPASKLWLAAGQRIQFRYLIRAS 116
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
VKSAND A AI +L E F + M T++ +G+S T F NAHG+ + GH +TARDM
Sbjct: 117 GVKSANDAATAIGIALEGNEAAFARRMTATARAMGMSRTTFRNAHGLTETGHMSTARDMT 176
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVA 230
+L + DFPQY + F + + NTN + GADG+KTG+T A+GFN+VA
Sbjct: 177 VLGRHMIYDFPQYYNIFSRLTTDAGVSQVSNTNRRFLNAYRGADGIKTGYTRAAGFNLVA 236
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
SA +G + +IA + G RN A LL MGF +IN Q + + P
Sbjct: 237 SAERGQERIIATMFGGTSTAQRNARVAELLDMGFARAPTTARINRPSPVPAQGSGGADTP 296
>gi|90425548|ref|YP_533918.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisB18]
gi|90107562|gb|ABD89599.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisB18]
Length = 476
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 102/290 (35%), Positives = 159/290 (54%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ L++ +TG V+ +PW PAS+TKLMTAYV +KE + L T +T
Sbjct: 19 TPRAAQAEALLLIEADTGKVLQAENATYPWYPASVTKLMTAYVTLKAIKEGRITLDTLLT 78
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+S A+ PS F+ G+ +T+DNALK+++VKSAND+AV +AE + + F MN+
Sbjct: 79 VSPTAASQSPSKMGFRAGTQLTVDNALKMMLVKSANDMAVVLAEGVGGSIDGFSAMMNDN 138
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
++ LG++ T ++N +G+ G T+ARD+ IL+ I D P+Y ++ I + +
Sbjct: 139 AQRLGMTQTSYVNPNGLPADGQITSARDLGILARAIIRDLPEYEYFVHIPSIRFGKRVTQ 198
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N N +G + GADG KTGF CASGFN+VASA + + LIAV+LGA R +A LL
Sbjct: 199 NFNRLIGRYPGADGFKTGFICASGFNLVASATRDGKRLIAVVLGAPSSQARALKAAQLLE 258
Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
GF + + PN+ +E+C +++ + +
Sbjct: 259 RGFSANQLTWLRPALGTVDNLAPIDAAPPNLRDEMCGPKRKRPASDESEE 308
>gi|56417129|ref|YP_154203.1| hypothetical protein AM1091 [Anaplasma marginale str. St. Maries]
gi|56388361|gb|AAV86948.1| hypothetical protein AM1091 [Anaplasma marginale str. St. Maries]
Length = 380
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 79/343 (23%), Positives = 143/343 (41%), Gaps = 8/343 (2%)
Query: 1 MRQFLV-----IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+R+FL+ L+ P ++ K P+ + + + V+ E+ D P+S
Sbjct: 2 IRRFLLSFLVPAFCCLALAPARPSYALKMHTKAPHAIVYELGSRTVLFEHDADVAAAPSS 61
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KLMT Y+VF L + ++S++A + S++ K G + + + + V S
Sbjct: 62 MSKLMTLYLVFQHLHAGLIKMDDTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSS 121
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND +A+AE + ++++FV+ +N+ +K + L+ + F N G GH + RD+ LS
Sbjct: 122 GNDACIALAEGVSGSQEQFVEDINSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSV 181
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
RI DFP+Y H F K G N N + +G DG+KTG T +G+ I ASA +
Sbjct: 182 RIFEDFPEYYHVFGEKQFTYNGVTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQKD 241
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNI 292
++ + V+ G R + LL F + + V
Sbjct: 242 NRRVFVVVNGLKTETERAYETKRLLLYAFNRFETKVVFPAGSVVGEVKVWNGRKGTVQMH 301
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + K + +K + +
Sbjct: 302 VRDDVVISYPRDLSKSVKAFVSYKSTVAAPVKKGQEIGTLSVQ 344
>gi|332160854|ref|YP_004297431.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|318604756|emb|CBY26254.1| D-alanyl-D-alanine carboxypeptidase [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325665084|gb|ADZ41728.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330863383|emb|CBX73505.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia enterocolitica
W22703]
Length = 403
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 88/328 (26%), Positives = 139/328 (42%), Gaps = 11/328 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 32 VNLKTMIPGVPQIDAEAYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G + + + + ++S ND VA+A+ +
Sbjct: 92 IGPEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN K LGL T F HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAI 211
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA G LI+ +LG
Sbjct: 212 YKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 272 HTYKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDSDRVQLGVDKDVYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + K ++
Sbjct: 332 GRMKDLKASYVLNTPEIHAPLAKNQVVG 359
>gi|163744788|ref|ZP_02152148.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanibulbus
indolifex HEL-45]
gi|161381606|gb|EDQ06015.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanibulbus
indolifex HEL-45]
Length = 491
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 96/278 (34%), Positives = 150/278 (53%), Gaps = 4/278 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L + A + I P ++A ++D TG I D +PASLTK+MT Y+
Sbjct: 13 LFLFAAFWVLVILPLSAMAAP---YAAYVIDARTGKEIHAENADTRLHPASLTKMMTLYI 69
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F ++ + L T +TIS+NA+ PPS + G + L ++ VKSAND A AI
Sbjct: 70 AFQAVERGELSLDTQVTISQNAASEPPSKLGMRPGQKIALRYLIRAAAVKSANDAATAIG 129
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E++ +E F + MN T+K LG++ T F N HG+ ++GH +TARDM + + D+PQY
Sbjct: 130 EAIEGSEAAFARRMNRTAKQLGMTRTTFKNMHGLTENGHLSTARDMTAMGRHLLYDYPQY 189
Query: 185 MHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ F + +K +TN G++ GADG+KTG+T A+GFN+ ASA +G++ +I +
Sbjct: 190 YNLFSRITADAGVRKVSHTNRRFLGSYKGADGIKTGYTRAAGFNLTASAERGNERIIVTV 249
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
G +RN A L+ +GF ++ + Y
Sbjct: 250 FGGNSTASRNAKVAELMDLGFRRAPSSAPLSKPVPPVY 287
>gi|308187437|ref|YP_003931568.1| DD-carboxypeptidase, penicillin-binding protein 6B [Pantoea vagans
C9-1]
gi|308057947|gb|ADO10119.1| DD-carboxypeptidase, penicillin-binding protein 6B [Pantoea vagans
C9-1]
Length = 388
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 96/348 (27%), Positives = 148/348 (42%), Gaps = 17/348 (4%)
Query: 2 RQFLVIIAMAML------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
R+ L + + ++ PF + L+D TG V+ PD NPAS
Sbjct: 4 RRLLFTVTATVFWASLAQADAIPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNPAS 63
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALK 109
LTKLMT YVV + +KK +T+ K+A K G +++ + +
Sbjct: 64 LTKLMTGYVVDRAIDQKKISRDDMVTVGKDAWAAGNPVFKGSSLMFLKPGDKLSVRDLSR 123
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+I+ S ND VA+A+ + +E FV MN+ + LGL THF HG+ G Y++A D
Sbjct: 124 GVIIDSGNDACVALADYVAGSEANFVGMMNHYVEKLGLQNTHFETVHGLDAPGQYSSALD 183
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNI 228
MA LS I P + + K L G N N L DG+KTG T +GFNI
Sbjct: 184 MAKLSRAIIDGEPDFYAMYSEKTLSWNGITQNNRNGLLWDNNLHVDGLKTGHTETAGFNI 243
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQN 284
+AS + G LIAV++G R + + LL G + + K + + N
Sbjct: 244 IASNVVGKHRLIAVVMGGKSPKGREEQARKLLVWGQNTFDTVQLFHAGKKIGSENVWYGN 303
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E+V + N + K D++ + ++
Sbjct: 304 PHQVEVGTAEDVYLSLPRSEVQNVKAKYVIDRKDLEAPLKANEVIGEI 351
>gi|94309170|ref|YP_582380.1| penicillin-binding protein 6 [Cupriavidus metallidurans CH34]
gi|93353022|gb|ABF07111.1| D-alanyl-D-alanine carboxypeptidase [Cupriavidus metallidurans
CH34]
Length = 397
Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats.
Identities = 87/322 (27%), Positives = 150/322 (46%), Gaps = 15/322 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ L D +G +A D PASLTKLMTAY+ F LKEK+ L +T +
Sbjct: 37 PQVAAKSWMLYDVTSGQALASQNADMRIEPASLTKLMTAYLAFEALKEKRLTLDQTVTPT 96
Query: 84 K--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ S + G +++ + L LIV+S ND ++A+AE++ +E+ FV MN
Sbjct: 97 DIVRKVKSDESRMFIEAGKPVSVQDLLLGLIVQSGNDASLALAEAVGGSEEGFVVMMNRE 156
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
++ +G+ THF N GV HYTTA D+AIL+ R+ DFP+Y + K + P
Sbjct: 157 AQRMGMKNTHFTNTDGVPDPNHYTTAVDLAILTTRLIKDFPEYYSMYSQKEFTYNKIRQP 216
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNK 254
N N + DG+KTG T ++G+ +++SA + G + L+++++G R +
Sbjct: 217 NRNRLLYIDPTVDGVKTGHTKSAGYCLISSAKRPLANVPNGSRRLVSIVIGTATEQIRTQ 276
Query: 255 VSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNT 308
S +L+ GF + + D Y+ ++ E V +
Sbjct: 277 ESLKILNYGFQFFDTLRLYDKGQVLATPDIYKGKTGTIKIGVANETFVTVPKGTGSRLKP 336
Query: 309 QMKEAKDKESHFIDFEKITLLK 330
++ + + +++ +K
Sbjct: 337 VLERQELLIAPITAGQQVGTVK 358
>gi|332981537|ref|YP_004462978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
50-1 BON]
gi|332699215|gb|AEE96156.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
50-1 BON]
Length = 380
Score = 194 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 86/354 (24%), Positives = 144/354 (40%), Gaps = 26/354 (7%)
Query: 1 MRQ---FLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M++ FL+I + M + + +++ TG V+ D
Sbjct: 1 MKRAVIFLLIFCVFMSPCLMISKALAVEDPPQISASVAAVMEVETGRVLYGKDADKRCPM 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK+MTA L+ + +S NAS S+ + G +TL++ L L++
Sbjct: 61 ASTTKIMTAITAIEC-----GDLSDIVEVSDNASGVEGSSIWLEVGERLTLEDLLYGLML 115
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD---- 169
+S ND AVAIAE + + +KFV MNN +K +G THF+N HG+ HYTTA D
Sbjct: 116 RSGNDAAVAIAEHIGGSVEKFVDMMNNKAKEIGARNTHFVNPHGLPDEDHYTTAYDLALI 175
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVGTFLGADGMKTGFTCASGFNI 228
A Y +I + + N N + + GA+G+KTG+T +G +
Sbjct: 176 TAYAMKNPVFKQIVSTKYRKIPWEGHEWDRAMQNKNKLLWKYEGANGVKTGYTKEAGRCL 235
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQN 284
VA+A + L+AV+L + S +LL GF N + + + I +
Sbjct: 236 VAAAYRNGMQLVAVVLN---DGPMWEDSMALLDYGFDNFSMYEVLPKDKTIIDVPVLRGK 292
Query: 285 LSNEVPNISEEVCTTQK--EIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + V E + E+ + ++ + +
Sbjct: 293 ENRVALKTARPVVIPVTDEERNRLRVEFHYPSAIEAPIAAGKDYGTVEVLLDGQ 346
>gi|254511090|ref|ZP_05123157.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium
KLH11]
gi|221534801|gb|EEE37789.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacteraceae bacterium
KLH11]
Length = 389
Score = 194 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 83/324 (25%), Positives = 143/324 (44%), Gaps = 8/324 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A ++D TG V+ D P PAS++KLMT YV F L++ + L
Sbjct: 21 PVHAFDTTARAAYVIDQKTGTVLLSKNADQPLPPASMSKLMTLYVAFEALRDGRLTLDET 80
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT--EKKFVQH 137
+ +S++A Y S + +++ L+ +IV S ND V IAE+L E F +
Sbjct: 81 LPVSEHAMSYGGSTMFLNTQDRVRVEDLLRGIIVLSGNDACVVIAEALSPDGSEAGFARF 140
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK- 196
M ++ +G++ ++F N++G GH + D+A+L+ R+ TDFP+Y F + E
Sbjct: 141 MTQRAQQMGMNDSNFANSNGWPAAGHMMSVHDLAVLADRLITDFPEYYPLFAEEEFEFDG 200
Query: 197 --GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N N + +GADG+KTG T +G+ +V SA QGD+ ++ V+ G R +
Sbjct: 201 RAPSNSRNRNPLLKLGIGADGLKTGHTQEAGYGLVGSAKQGDRRVVFVLSGLDSVGKRAE 260
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFY---QQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+ ++++ F N +R V + E+ T +++
Sbjct: 261 EAEAVVNWSFRNFVERTVAKADEPVAQARLWMGAEKTVGLVPEQDLTLLFPVLSDKDIKA 320
Query: 312 EAKDKESHFIDFEKITLLKNKITK 335
E K L + +
Sbjct: 321 EVVYDGPINAPVAKGQKLAELVIR 344
>gi|237809572|ref|YP_002894012.1| Beta-lactamase [Tolumonas auensis DSM 9187]
gi|237501833|gb|ACQ94426.1| Beta-lactamase [Tolumonas auensis DSM 9187]
Length = 413
Score = 194 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 141/332 (42%), Gaps = 8/332 (2%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
M + L + L+D N+G ++ + PASLTK+MT+YV+ LK
Sbjct: 43 MPAPAPVALPSPPQISAKAHLLMDYNSGQILVGENTEERLPPASLTKMMTSYVIGQELKS 102
Query: 72 KKAMLTTPITISKNASEYPP---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+ T +TIS+NA S + G +++DN K +I++S ND +A+AE +
Sbjct: 103 GRIKPTDMVTISQNAWAKNYGDSSKMFIEVGKQVSVDNLNKGIIIQSGNDACIAMAEHIA 162
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+E F MN + LG+S +HF+NAHG+ HY+TA DMA + + D P +
Sbjct: 163 GSEDSFASLMNQWAAKLGMSNSHFVNAHGLHNVDHYSTAHDMARMGQALIRDLPNEYAIY 222
Query: 189 QIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILGA 246
K G N N L DG+KTG G+N+VASA LI+VI+G+
Sbjct: 223 SQKDFTFNGITQHNRNRLLWDKTLVVDGIKTGHVSEVGYNLVASATGPEGMRLISVIIGS 282
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEI 303
R + S LL+ GF + + + +E+ ++
Sbjct: 283 NSEQQRAEESKKLLTYGFRFYQNIQPYKQGAELATQRIWMGDKSEIRLGTDRDINLLAPR 342
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + +K + +
Sbjct: 343 GSAAKMKADFQLTRDLHAPIQKGETVGTIFLR 374
>gi|146310825|ref|YP_001175899.1| D-alanyl-D-alanine carboxypeptidase fraction A [Enterobacter sp.
638]
gi|145317701|gb|ABP59848.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Enterobacter sp. 638]
Length = 403
Score = 194 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 82/330 (24%), Positives = 140/330 (42%), Gaps = 11/330 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
NI + Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K
Sbjct: 32 LNIKTMIPGVPQIDAESYILIDYNSGKVLAEMNADSRRDPASLTKMMTSYVIGQAMKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
T +T+ +A K G + + ++ + ++S ND VA+A+
Sbjct: 92 FKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFA 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MN+ LGL +HF HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDAFVGLMNSYVSALGLKNSHFQTVHGLDAEGQYSSARDMALIGQALIRDVPNEYTI 211
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K G + N N + DG+KTG T +G+N+VASA +G LI+ ++G
Sbjct: 212 YKEKEFTFNGIRQTNRNGLLWDNSLKVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + +++ T
Sbjct: 272 RTFKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPVWFGDNDRASLGVDKDLYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + +K ++
Sbjct: 332 GRMKDLKASYVLNTSELHAPLKKNQVVGTI 361
>gi|123443220|ref|YP_001007194.1| D-alanyl-D-alanine carboxypeptidase fraction A [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|122090181|emb|CAL13044.1| putative penicillin-binding protein 5 [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 403
Score = 194 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 88/328 (26%), Positives = 139/328 (42%), Gaps = 11/328 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 32 VNLKTMIPGVPQIDAEAYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G + + + + ++S ND VA+A+ +
Sbjct: 92 IGPEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN K LGL T F HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAI 211
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA G LI+ +LG
Sbjct: 212 YKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTDAAGYNLVASATDGQMRLISAVLGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++V T
Sbjct: 272 HTYKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDNDRVQLGVDKDVYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + K ++
Sbjct: 332 GRMKDLKASYVLNTPEIHAPLAKNQVVG 359
>gi|304407014|ref|ZP_07388668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus
curdlanolyticus YK9]
gi|304344001|gb|EFM09841.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus
curdlanolyticus YK9]
Length = 398
Score = 194 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 80/314 (25%), Positives = 141/314 (44%), Gaps = 8/314 (2%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L+D ++G VI + PAS+TK+MT ++ L + + LT ++ S+ AS
Sbjct: 49 RSAVLMDADSGTVIFDKNSHDRLPPASITKIMTMLLIMEALDDGRLKLTDKVSASEYASS 108
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S + G M++D +K + + S ND +VA+AE + +E +FV+ MN ++ LG+
Sbjct: 109 MGGSQIFLEPGEEMSVDEMIKGIALASGNDASVAMAEKIGGSEAEFVKMMNEKAQQLGMK 168
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL----EIKGKKYPNTN 204
THF N +G+ HY++A D+AI+S + + + K NTN
Sbjct: 169 DTHFANCNGLPVADHYSSAHDIAIMSRELLKHTQITKYTGMYQDYLRKTSEKPFWLVNTN 228
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
V + GADG+KTGFT + F + A+A + +IAV++G + TRN +S+L F
Sbjct: 229 KLVWFYTGADGLKTGFTNEAKFCLSATARRDGLRVIAVVMGEPNTKTRNAEVSSMLDYSF 288
Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVP----NISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ + VP + ++ + + E K +
Sbjct: 289 AQYSNYSIFKQGDAIGKVKIEKGAVPELELKATHPYSVLMRKGASKDNIRYELKLNNALK 348
Query: 321 IDFEKITLLKNKIT 334
+ + +
Sbjct: 349 APIKIGDPIGRIVV 362
>gi|86749795|ref|YP_486291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris HaA2]
gi|86572823|gb|ABD07380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris HaA2]
Length = 419
Score = 194 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 81/319 (25%), Positives = 131/319 (41%), Gaps = 8/319 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ P L+D +G V+ E D P+S+ KLMT +VF L + + T
Sbjct: 51 VAGGYDTDAPSAILIDGESGSVLFEKNADELRAPSSMLKLMTVELVFHLLAKGEIKPTDE 110
Query: 80 ITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
IS+ A S + S + +++ LK I++S ND +A+AE + +E F
Sbjct: 111 YKISEYAWRRGGAPAGNSTMFAEIHSKVAVEDLLKGAIIQSGNDSCIALAEGIAGSEPAF 170
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V+ M ++ +GL+ + F N++G+ G+ + R++ L+ I +P F K
Sbjct: 171 VERMTKRAREIGLTQSTFANSNGLPDPGNKMSVRELGRLARHIIQTYPNDYKLFSEKEFT 230
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ N N + TF GADG+KTG+T G+ +V SA+Q LI V+ G D + R
Sbjct: 231 WNKIRQTNRNPLLNTFNGADGLKTGYTKDGGYGMVGSAVQNGMRLIVVVNGIDDIDDRAS 290
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQ---QNLSNEVPNISEEVCTTQKEIINYNTQMK 311
LL GF N R Y VP I E + +
Sbjct: 291 EVKKLLEWGFRNFESRALFASDATIGYARVFGGEKRYVPLIPAEPVRVMVRKNGSDRLIA 350
Query: 312 EAKDKESHFIDFEKITLLK 330
+ +
Sbjct: 351 RIVYTGPVAAPVDAGRRIG 369
>gi|322833272|ref|YP_004213299.1| Beta-lactamase [Rahnella sp. Y9602]
gi|321168473|gb|ADW74172.1| Beta-lactamase [Rahnella sp. Y9602]
Length = 403
Score = 194 bits (491), Expect = 2e-47, Method: Composition-based stats.
Identities = 84/325 (25%), Positives = 138/325 (42%), Gaps = 12/325 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+A + L+D N+G ++ E+ PD +PASL+K+M +YVV +K K
Sbjct: 32 APVAPQINAKSWVLMDYNSGKILTESNPDARLDPASLSKIMVSYVVGQAIKSGKIKSDDL 91
Query: 80 ITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+++ +A K G + + K ++++S ND ++A+A+ + ++
Sbjct: 92 VSVGNDAWATGNPVLRGSSLMFLKPGDRVPVSELNKGIVIQSGNDASIALADFVAGSQDS 151
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
FV MN ++ L L THF HG+ G YT+A DMA+LS + D P + K
Sbjct: 152 FVNLMNRYAEQLKLQNTHFKTVHGLDADGQYTSATDMALLSQALIRDTPDEYALHKEKEF 211
Query: 194 EIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNT 251
K N N + L DG+KTG+T +G+N+V+SA LIAV++GA
Sbjct: 212 TFNHIKQINRNRLLWSSNLNVDGIKTGYTSGAGYNLVSSASDSTGMRLIAVVMGAPSDRI 271
Query: 252 RNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R S SLL+ GF I + + ++E T + N
Sbjct: 272 RFNESESLLTWGFRFYETLTPIKAGDAFTSQRVWFGEEKMVPLGVAENASLTMPKGQLKN 331
Query: 308 TQMKEAKDKESHFIDFEKITLLKNK 332
+ K ++
Sbjct: 332 LKASFNLTSPQLEAPLAKNQVVGTV 356
>gi|126736702|ref|ZP_01752441.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. CCS2]
gi|126713817|gb|EBA10689.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. CCS2]
Length = 382
Score = 194 bits (491), Expect = 3e-47, Method: Composition-based stats.
Identities = 80/330 (24%), Positives = 141/330 (42%), Gaps = 8/330 (2%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
P + A + D TG V+ D P PAS++KLMT Y+ F + +
Sbjct: 3 SLAFAPGWAAAFETNATAAYIYDQTTGTVLLSKNADTPLPPASMSKLMTIYMAFEAVADG 62
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT-- 130
+ + + +S +A+ + S+ +++++ L+ +IV S ND +V +AE+L
Sbjct: 63 RLDINEELAVSSHAASFGGSSMFLDTTDRVSVEDLLRGVIVVSGNDASVVLAEALSPDGT 122
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
E F + M + ++ +G+ + F+N+ G GH + D+ IL+ R+ TDFP + F
Sbjct: 123 ESGFARMMTDRARQMGMMNSTFVNSSGWPAAGHRMSMEDLGILANRLITDFPTFYPLFAE 182
Query: 191 KGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
N N + +GADG+KTG T +GF +V SA Q D+ +I VI G
Sbjct: 183 TEFPFDGRVPSNSRNRNPVLSMGIGADGLKTGHTEEAGFGLVGSAKQDDRRIIFVITGLD 242
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS---EEVCTTQKEII 304
R R++ SA +++ F ++ + E+P I + + ++
Sbjct: 243 SRQERSEESAKIINWAFRQFAQKEVAEAGTRIASADVWMGELPTIGLTVADDFSLLVPVL 302
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
N E L +
Sbjct: 303 NQGDIEAEVVYDGPIEAPITAGQQLGELVI 332
>gi|251796348|ref|YP_003011079.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2]
gi|247543974|gb|ACT00993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2]
Length = 405
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 89/369 (24%), Positives = 145/369 (39%), Gaps = 35/369 (9%)
Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAETN------------------------KLPYYTL 33
M++ L I+ A P + A L
Sbjct: 1 MKKVCTKLFILFAAFALTAMPAAANANAVISAKEPVPGAQGQQQQTASLDLAPSARSAVL 60
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D ++G VI E + PAS+TK+MT ++ L + K LT + S+ A+ S
Sbjct: 61 MDADSGTVIYEKDSNVKLPPASITKVMTMLLIMEALDDGKIKLTDKVPTSEYAASMGGSQ 120
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ G MT+D LK + + S ND +VA+AE L +E++FV MN ++ LGL THF
Sbjct: 121 IFLEPGEEMTVDEMLKGIAMASGNDASVAMAEKLAGSEQQFVVMMNEKAQQLGLQNTHFA 180
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL----EIKGKKYPNTNWAVGT 209
N +G+ HYT+A D+A++S + + + K NTN V
Sbjct: 181 NCNGLPAADHYTSAHDIAVMSRELLKHSEITKYTGSYQDYLRKTSEKPFWLVNTNKLVRF 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ GADG+KTGFT + F + A+A + + +IAV++G + TRN + +L F T
Sbjct: 241 YSGADGLKTGFTNEAKFCLTATAKRDNLRVIAVVMGEPNTKTRNAEVSQMLDFTFAQYTT 300
Query: 270 RKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ + K+ E + +
Sbjct: 301 HPIFKEGDTMGTIKVEKGAVREIPLVAKHPYSILLKKGAATQDIRYELQIDQPLKAPVAI 360
Query: 326 ITLLKNKIT 334
+ +
Sbjct: 361 GQSIGKLVV 369
>gi|297180929|gb|ADI17133.1| d-alanyl-d-alanine carboxypeptidase [uncultured gamma
proteobacterium HF0070_03O15]
Length = 370
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 90/328 (27%), Positives = 150/328 (45%), Gaps = 9/328 (2%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ N+ + + Y L + NT V+A D P PASLTKLMT+YVV ++KE
Sbjct: 2 LSINLSAAIPNPPDLGVGSYILYEPNTKKVLASFNADAPVEPASLTKLMTSYVVADYIKE 61
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
LT IS NA + P S ++ + + + +K +I++S ND +VA+AE + +E
Sbjct: 62 DFIDLTDTPKISINAWKTPGSRMFIRESTKVPVSELIKGMIIQSGNDASVALAEHVAGSE 121
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ F MN ++ LG+ T F NA G+ + T+A D+A+L+ + +FP + ++ K
Sbjct: 122 ENFSYLMNEYARELGMENTSFNNASGLPDPLNVTSANDLAVLTGELIKNFPDHYRHYSQK 181
Query: 192 GLEIKGKKYPNTNWAVGTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
G N N + DG+KTG+T ++G+ +V SA++ L+AV+LG+ D
Sbjct: 182 SFTYAGIAQKNRNQLLWRDNTSITFDGVKTGYTESAGYCLVGSAVKDGMRLVAVVLGSED 241
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEII 304
R ++L+ GF K N ISE+V T +
Sbjct: 242 DK-RFNDVSNLMVYGFRYFKTEKLFEKNEPLKSVQVIAGKKDNVNVGISEDVVLTLQRDQ 300
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + D + +
Sbjct: 301 RDSLRYEVTADT-TVLAPVNSMDKAGTV 327
>gi|255019743|ref|ZP_05291820.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
51756]
gi|254970811|gb|EET28296.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
51756]
Length = 388
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 82/308 (26%), Positives = 137/308 (44%), Gaps = 3/308 (0%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y L+D ++G +IA + PASLTKLMTAY+ + + + +S A +
Sbjct: 46 SYVLMDYDSGQIIAAKEENLHRAPASLTKLMTAYLTYQAMANGSLRPDETVNVSNTAWKT 105
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
S + G +T+D L L++ S ND AVA+AE++ ++ FV MN+ ++ L L
Sbjct: 106 GGSRMFIQPGLPVTVDQLLHGLLIDSGNDAAVALAETVGGSQAGFVTLMNDAARQLHLDN 165
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
TH+ N +G+ YTTA D+A LS + +PQ + + K + N +
Sbjct: 166 THYSNVNGLPDSNLYTTALDVAKLSRALIQQYPQVIAITRQKSYTYNKITQRSWNPVLFR 225
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
DG+KTG T SG+ I A+A + + LIAV+LG + SLL+ G+ D
Sbjct: 226 DPSVDGLKTGLTDESGYCIDATAQRNGRRLIAVVLGGPSWSGSTNAVESLLNYGYRFFED 285
Query: 270 RKKINYIIKDFYQQNLSNE---VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
+ + + ++ + VP + + K + + K
Sbjct: 286 HELYKPMTEVGEIRDPNLSPMRVPVAVATEVIVTVPRGRLDELDRRIVWKPAGSLPIAKG 345
Query: 327 TLLKNKIT 334
++ I
Sbjct: 346 GVVGEMIL 353
>gi|225677145|ref|ZP_03788144.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225590812|gb|EEH12040.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 368
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 82/324 (25%), Positives = 148/324 (45%), Gaps = 5/324 (1%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
F S K +LD + I ++ D P+S++KLMT Y+ F +LK
Sbjct: 15 PFSSYSYQFRTKAKQAVVLDLASDSFIFDHNSDEKMAPSSMSKLMTLYIAFDYLKAGIIH 74
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ +S+ A E S+ K+G ++T+ L+ + + S ND + +AE + +E+ FV
Sbjct: 75 MEDKFRVSRKAWERRGSSMFLKEGQSVTVRELLEGITIVSGNDACITLAEGIAGSEENFV 134
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
MN ++NL L+ +HF+N+ G H+ A+D+ +L+ RI TDFP+Y F + L
Sbjct: 135 AEMNEVAQNLNLNDSHFVNSSGWPDEDHFMNAKDLVMLAKRIFTDFPEYYDLFSEQYLTY 194
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
N N + +G DG+KTG+T A G+ IVASA + D+ + AV+ G R +
Sbjct: 195 NEIVQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVASAKRNDRRIFAVVNGLNTEKERIEE 254
Query: 256 SASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+ L+ + +K + ++ +V T ++ +++
Sbjct: 255 AKRLIQYSLNHFNTKKIFAKDSVVEEVNVLYGKDKKVPITVANDVTITYNRKLHDQIKVR 314
Query: 312 EAKDKESHFIDFEKITLLKNKITK 335
+ K+ +K + +
Sbjct: 315 I-EYKDMIPAPIKKGQEVGEVFVE 337
>gi|223986124|ref|ZP_03636147.1| hypothetical protein HOLDEFILI_03455 [Holdemania filiformis DSM
12042]
gi|223961929|gb|EEF66418.1| hypothetical protein HOLDEFILI_03455 [Holdemania filiformis DSM
12042]
Length = 383
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 86/349 (24%), Positives = 144/349 (41%), Gaps = 17/349 (4%)
Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ +VI L ++ S L+D TG ++ E PAS+
Sbjct: 1 MKKLASIVIALSLFLVSVHATTSQGVDLTPSAKAAILIDYETGQILYEKNSSAKLYPASM 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+M+ +V + K T +T S +AS S + G MT+++ K V SA
Sbjct: 61 TKMMSLLLVVEAIHNGKLSWDTEVTASAHASSMGGSQIFLETGEVMTVEDLYKASTVASA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND VA+AE + +E+ F MN ++ LGL THF+NA G+ HY+ A+DMA +
Sbjct: 121 NDAIVALAEKVGGSEENFAAMMNEKAEQLGLEQTHFVNATGLHDDNHYSCAKDMAAIGRA 180
Query: 177 IKTDFPQY------MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + + I+ NTN + T+ G DG+KTG+T S + I
Sbjct: 181 LIQEGQDDILRFTSTYDDYIRADTENKFWLVNTNKLIRTYQGMDGLKTGYTTQSMYCITV 240
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
+A + LI V +G R+ RN +++LL GF + ++ + + +
Sbjct: 241 TAKRDGLRLIGVAMGEPTRDVRNSEASALLDYGFSTYGYQIEMEKGTPVTTIKVDNGKPD 300
Query: 291 NISEEVC-----TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ K + + DK+ + + I
Sbjct: 301 EVRLVTKEAIGHIVAKGAQSALINTEIVLDKK--KAPIQAGETVGRVIL 347
>gi|83943052|ref|ZP_00955512.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. EE-36]
gi|83954241|ref|ZP_00962961.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. NAS-14.1]
gi|83841278|gb|EAP80448.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. NAS-14.1]
gi|83846060|gb|EAP83937.1| D-alanyl-D-alanine carboxypeptidase [Sulfitobacter sp. EE-36]
Length = 389
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 79/343 (23%), Positives = 143/343 (41%), Gaps = 14/343 (4%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
I A + + + + A + ++D TG V+ D P PAS++KLMT Y+ F
Sbjct: 4 IFAATIATLLLALPAQAFETQARAAYVVDQTTGTVLLTKNADEPLPPASMSKLMTLYMAF 63
Query: 67 SFLKEKK----AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
++ K LT + +S++A Y S + +++ L+ +IV S ND
Sbjct: 64 EAIERGKSNGGLDLTEELPVSQHAMSYGGSTMFLDTTDRVKVEDLLRGIIVLSGNDACAV 123
Query: 123 IAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
IAE+L E F + M ++ +G++ + F N++G GH + RD+ +L+ R+ D
Sbjct: 124 IAEALSPDGSEAGFARLMTQRAQQMGMTNSTFANSNGWPAAGHRMSLRDLGLLATRLIED 183
Query: 181 FPQYMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+PQY F + + N N +G +GADG+KTG T +G+ +V SA QGD+
Sbjct: 184 YPQYYPMFSQREFLFDGRAPQNKTNRNPLLGLGIGADGLKTGHTEEAGYGLVGSAKQGDR 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNIS 293
++ V+ G R + S S+++ F + R +
Sbjct: 244 RVVFVLSGLESAAARAQESESIVNWAFRQFSQRSMGKAGTMIAEAPVALGAQGAVGLELE 303
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ + + K + + +
Sbjct: 304 SDLSVLVPVSGGSDVSAEVV-YTGPLRAPITKGQNIGELVLTR 345
>gi|114762661|ref|ZP_01442095.1| D-alanyl-D-alanine carboxypeptidase [Pelagibaca bermudensis
HTCC2601]
gi|114544571|gb|EAU47577.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius sp. HTCC2601]
Length = 391
Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats.
Identities = 80/325 (24%), Positives = 135/325 (41%), Gaps = 8/325 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ A +LD TG V+ D PAS++KLMT Y+ F +++ + L
Sbjct: 22 TQAGAFDTSARAAFVLDYTTGTVLMAKNADEALPPASMSKLMTLYMAFEAVRDGRLQLDE 81
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT--EKKFVQ 136
+ +S++A Y S + +++ L+ +IV S ND IAE+L E F +
Sbjct: 82 RLPVSQHAMSYGGSTMFLNTTDRVAVEDLLRGIIVLSGNDACAVIAEALSPNGTEAGFAE 141
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
M ++ LG++ + F NA G H + RD+ +L+ RI DFP++ F + E
Sbjct: 142 LMTRRAQQLGMTNSTFENASGWPAPNHRMSVRDLTLLATRIIEDFPEFYPIFAERRFEFD 201
Query: 197 ---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
N N + +GADG+KTG T +G+ +V SA Q + +I I G R
Sbjct: 202 GRAPSNVNNRNPLLRLDIGADGLKTGHTQEAGYGLVGSAEQDGRRVIFTISGLDSERARA 261
Query: 254 KVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+ + S+++ F +R + + + V ++EE T +
Sbjct: 262 EEAESIVNWAFRQFAERTLVEQGTAVAQAEVWLGAEDSVGLVAEEDVTLLVPVTPGTMLE 321
Query: 311 KEAKDKESHFIDFEKITLLKNKITK 335
E L I +
Sbjct: 322 AEVVYTGPLKAPISAGQQLAELIIR 346
>gi|260427958|ref|ZP_05781937.1| serine-type D-Ala-D-Ala carboxypeptidase [Citreicella sp. SE45]
gi|260422450|gb|EEX15701.1| serine-type D-Ala-D-Ala carboxypeptidase [Citreicella sp. SE45]
Length = 519
Score = 193 bits (489), Expect = 3e-47, Method: Composition-based stats.
Identities = 96/279 (34%), Positives = 151/279 (54%), Gaps = 4/279 (1%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
I ++ P +IA ++D +G V+ D P +PASLTK+MT Y+ F
Sbjct: 16 FILAIVMLAAMPLSAIAAPF---AAMVMDARSGEVLHSENADTPLHPASLTKMMTLYIAF 72
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
++ + + + +T+S+NA+ PPS ++G + L ++ VKSAND A AI E+
Sbjct: 73 EAVEHGEITMDSVVTVSRNAASEPPSKLGLREGQKIKLRYLVRAAAVKSANDAATAIGEA 132
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E F + MN T+K LG++ + F NA+G+ + GH +TARDM+IL + D+PQY +
Sbjct: 133 IAGSEAAFARRMNRTAKALGMTRSTFKNANGLTESGHMSTARDMSILGRHMVYDYPQYYN 192
Query: 187 YFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
F ++ NTN G++ GADG+KTG+T A+GFN+VASA +G + +I + G
Sbjct: 193 LFSRISTSAGVREVANTNRRFLGSYKGADGIKTGYTRAAGFNLVASAERGQERVITTVFG 252
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
RN A L+ +GF R + Y N
Sbjct: 253 GASTAARNAKVAQLMDLGFKRAKTRVALRKPGLPPYLGN 291
>gi|15603792|ref|NP_246866.1| DacA [Pasteurella multocida subsp. multocida str. Pm70]
gi|12722361|gb|AAK04011.1| DacA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 394
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 91/339 (26%), Positives = 150/339 (44%), Gaps = 9/339 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ IA ++L+ + + L+D N+G VIA PD PASLTK+MT+YVV
Sbjct: 17 LCIAPSLLAQDIDYGIAVPQLNAQTFILMDYNSGAVIAALNPDQRQYPASLTKMMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
LK+ K +TI ++A S +++ + + +I+ S ND +VA
Sbjct: 77 GDALKQGKINNADRVTIGESAWGKNFPGSSKMFLNLNQQVSVSDLNRGVIIVSGNDASVA 136
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
IAE + + FV MN ++ GL THF HG+ + Y++ARDMAI+ + D P
Sbjct: 137 IAEHVAGSVPAFVDAMNKYAQQFGLKNTHFTTVHGLDEDNQYSSARDMAIIGAHLIRDLP 196
Query: 183 QYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLI 240
+ + K K N N + DG+KTG T +G+N+VASA + LI
Sbjct: 197 EEYKIYAEKDFTFNKIKQNNRNGLLWDKSIQVDGIKTGHTDKAGYNLVASATNANNMRLI 256
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEV 296
+V++G R S LL GF N K + + Y ++ + ++
Sbjct: 257 SVVMGVPTIKGREVESKKLLQWGFANFDTFKTLEAGKAISEQSVYYGDMGKVSLGVLQDG 316
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T + + + +K+ K ++ + +
Sbjct: 317 FITIPKGKQTELKARYELNKKYLQAPLAKGEVVGQVVYQ 355
>gi|258516321|ref|YP_003192543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
acetoxidans DSM 771]
gi|257780026|gb|ACV63920.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
acetoxidans DSM 771]
Length = 373
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 89/337 (26%), Positives = 145/337 (43%), Gaps = 15/337 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M + L + + P + + L+D +G V+ + PAS TK+
Sbjct: 5 MLRVLPFFLLLLNVYCLPVQAAYSPPVAAESAVLMDVGSGQVLYQKNAFQRRPPASTTKI 64
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+TA + L +TISK A+ S+ + G +TL+ + ++KS ND
Sbjct: 65 LTALLALE-----GGDLGQVVTISKTAASTGESSIYLQAGENLTLEELIYGALLKSGNDS 119
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VAIAE + TE FVQ MN +K +G +HF+N +G+ GHY+TA D+A L+
Sbjct: 120 CVAIAEQIAGTEANFVQLMNEKAKQMGAMDSHFVNCNGLPAEGHYSTAYDLAKLTCYALQ 179
Query: 180 DFPQYMHYFQIKGLEIKGKKYP---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+ + + NTN + T+ ADG+KTG T A+G +VASA + +
Sbjct: 180 NPVFNTVVSTREKVIRGPGWQRHLQNTNQLLDTYTFADGVKTGTTNAAGPCLVASATRDN 239
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNIS 293
+ L++V+L + R S SLL GF N ++ K + S V +S
Sbjct: 240 RRLVSVVLHS---ANRYGDSKSLLEYGFNNFSNNKVLTAGQVIGDIPVCDGFSPAVQAVS 296
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ T + K+ + +K +
Sbjct: 297 KGDLTVVIPNGRTDLIEKKIYLVDGLTAPVKKEQKIG 333
>gi|295696433|ref|YP_003589671.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
2912]
gi|295412035|gb|ADG06527.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus tusciae DSM
2912]
Length = 403
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 81/348 (23%), Positives = 142/348 (40%), Gaps = 20/348 (5%)
Query: 1 MR---QFLVIIAMAMLSNIFPFLSIA---------ETNKLPYYTLLDTNTGHVIAENYPD 48
MR +++ I+A+ + S+ + L+D TG V+ PD
Sbjct: 1 MRIAVRWMTILALVIWVWSGSRGSVPARADQADGPPDLAVRSAVLMDMKTGQVLYAKNPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
P PAS+TK++TA V + L IT S+ A+ + +G +L+ L
Sbjct: 61 EPHYPASITKILTAIVALERGQ-----LNDRITTSRLATLQDGNRIYLVEGEEHSLEELL 115
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+++ S ND AVAIAE + F MN T+K +G THF N +G+ H TTA
Sbjct: 116 YGMMLNSGNDAAVAIAEHYGGSVAGFAAMMNATAKEIGALHTHFTNPNGLHDPNHVTTAY 175
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASG 225
DM ++ + + N N + T+ GA G+KTG+T +
Sbjct: 176 DMCLIGRYAMQNPIFRQIVATKTYPWHGKEWESELVNINRMLWTYPGATGIKTGYTDQAQ 235
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285
+V SA +G++SLIA ++ + + ++ LL GF + ++ + Q
Sbjct: 236 QTMVVSATRGNESLIATLMDIPGQEAMREEASKLLDWGFQHFATQRLASAGEAAETVQLP 295
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
++ N Q+ + + + +K ++ +
Sbjct: 296 GHQTANALLSRSVWYTFAQGTAPQVTRNIELDKPKLPLQKGAVVGQAV 343
>gi|42520006|ref|NP_965921.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|99035928|ref|ZP_01314975.1| hypothetical protein Wendoof_01000183 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|42409743|gb|AAS13855.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 368
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 82/324 (25%), Positives = 148/324 (45%), Gaps = 5/324 (1%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
F S K +LD + I ++ D P+S++KLMT Y+ F +LK
Sbjct: 15 PFSSYSYQFRTKAKQAVVLDLASDSFIFDHNSDEKMAPSSMSKLMTLYIAFDYLKAGIIH 74
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ +S+ A E S+ K+G ++T+ L+ + + S ND + +AE + +E+ FV
Sbjct: 75 MEDKFRVSRKAWERRGSSMFLKEGQSVTVRELLEGITIVSGNDACITLAEGIAGSEENFV 134
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
MN ++NL L+ +HF+N+ G H+ A+D+ +L+ RI TDFP+Y F + L
Sbjct: 135 AEMNEVAQNLNLNDSHFVNSSGWPDEDHFMNAKDLVMLAKRIFTDFPEYYDLFSEQYLTY 194
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
N N + +G DG+KTG+T A G+ IVASA + D+ + AV+ G R +
Sbjct: 195 NEIVQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVASAKRNDRRIFAVVNGLNTEKERIEE 254
Query: 256 SASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+ L+ + +K + ++ +V T ++ +++
Sbjct: 255 AKRLIQYSLNHFNTKKIFVKDSVVEEVNVLYGKDRKVPITVANDVTITYNRKLHDQIKVR 314
Query: 312 EAKDKESHFIDFEKITLLKNKITK 335
+ K+ +K + +
Sbjct: 315 I-EYKDMIPAPIKKGQEVGKVFVE 337
>gi|260598500|ref|YP_003211071.1| D-alanyl-D-alanine carboxypeptidase [Cronobacter turicensis z3032]
gi|260217677|emb|CBA32019.1| D-alanyl-D-alanine carboxypeptidase dacD [Cronobacter turicensis
z3032]
Length = 412
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 92/340 (27%), Positives = 140/340 (41%), Gaps = 11/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ A + Y L+D TG ++A N NPASLTKLMT Y
Sbjct: 36 IMLAGITAQAHAAALSMPQPPAIMAGSYVLMDYTTGQILAANNEHQQRNPASLTKLMTGY 95
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSAN 117
VV + + +T+ K+A K G +T+ + + LIV S N
Sbjct: 96 VVDRAIDSHRITPDDVVTVGKDAWAKDNPVFEGSSLMFLKAGDRVTVRDLSRGLIVDSGN 155
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VA+A+ + + +FV MN+ + LGL THF HG+ G +++A D+A+LS I
Sbjct: 156 DACVALADYVAGGQPQFVSMMNDYVQKLGLKDTHFETVHGLDAPGQHSSAYDLAVLSRAI 215
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
P + H + K L G N N L DG+KTG T +GFN++AS++ G
Sbjct: 216 IHGEPAFYHMYSEKSLTWNGITQQNRNGLLWDKTLNVDGLKTGHTSGAGFNLIASSVDGK 275
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNI 292
+ LIAVI+GA R + LL G + + K +
Sbjct: 276 RRLIAVIMGADSPKGREDQARKLLHWGQQTFDTVEILQKGKKVGTERVWYGKNEQVAVGT 335
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T + N + K D+E + +
Sbjct: 336 DRDFWLTLPKAQLANVKAKYLLDRERLDAPLDANEKVGEI 375
>gi|154498460|ref|ZP_02036838.1| hypothetical protein BACCAP_02449 [Bacteroides capillosus ATCC
29799]
gi|150272528|gb|EDM99713.1| hypothetical protein BACCAP_02449 [Bacteroides capillosus ATCC
29799]
Length = 454
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 80/372 (21%), Positives = 145/372 (38%), Gaps = 38/372 (10%)
Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHP 50
M++ F +++ +A++ + S A L+DT G ++ E+
Sbjct: 1 MKKNRVFSLVLTLALICAVLAPFSTAAANSVDDYVVNARSAILVDTTYGEILYEHNSHER 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYPPSNSTFKKGSTMTLDNA 107
PAS+TK+MT + + + L IT+S + S K G +TL +
Sbjct: 61 TYPASITKVMTGLLTIEAIDRGELSLDQQITVSSNVNDGMMSGASTQNLKSGEVLTLKDV 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
L ++ SAN+ +AE++ + FV+ MN + LG THFMN HG+ HYTTA
Sbjct: 121 LACALIPSANEACNVLAETVAGSIDAFVELMNQRAAELGCEDTHFMNPHGLHDENHYTTA 180
Query: 168 RDMAILSWRIKTDFPQY------------MHYFQIKGLEIKGKKYPNTNWAVGTFLGADG 215
D+ + + + + + + T+ G
Sbjct: 181 YDIYLFCNEAMKHDIFRELVTSMNYTVPATNMSEERTFWDTNALITSWKYKGYTYEYCTG 240
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGAL--------DRNTRNKVSASLLSMGFYNK 267
+KTG+T +G+ + ++A +GD+SLIAV+ G + T S LL GF N
Sbjct: 241 IKTGYTPEAGYCLASAATKGDRSLIAVVTGCERTPGATGSEGYTHFSESKKLLEWGFSNF 300
Query: 268 TDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNT-QMKEAKDKESHFID 322
+ + ++ + V + + ++ + K + ++
Sbjct: 301 SYQSIMSSSKPQLSIPVTLSETDHVVAEPNGTLSAVLPNDVSAEDFEQKVERYYDTLEAP 360
Query: 323 FEKITLLKNKIT 334
EK T+L
Sbjct: 361 VEKGTVLGKVTL 372
>gi|221069456|ref|ZP_03545561.1| Serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni
KF-1]
gi|220714479|gb|EED69847.1| Serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni
KF-1]
Length = 390
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 94/329 (28%), Positives = 152/329 (46%), Gaps = 15/329 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ Y L+D G V+ D P ASLTKLM+AYVVF L+ KK L
Sbjct: 27 AAPVPPEIAARNYLLVDVTAGQVLGAKDIDAPVEQASLTKLMSAYVVFDALRAKKITLEQ 86
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S+ A + P S + +++ L +I++S ND +A+AE++ T + FV+ M
Sbjct: 87 RMPVSERAWKMPGSRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENFVKMM 146
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N+ +K LG+ T + N G+ + GH TTARD++IL+ R+ DFP+YMHY+ K G
Sbjct: 147 NDQAKALGMKNTSYKNPEGLTEPGHLTTARDLSILAQRLMHDFPEYMHYYSTKQYSYPGT 206
Query: 199 KY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGALDRN 250
N N + DG+KTG T A+G+ +VA+A + + L++++LG
Sbjct: 207 PASNGSNRNALLFRDPTVDGLKTGHTNAAGYCLVATAKRDLPNVGQRRLLSIVLGTASEK 266
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEE----VCTTQKEI 303
R S LL+ G+ K + + +N V + V
Sbjct: 267 ARANESQKLLNWGYTAFDAVKLFDADQPVATPAVWKGAANAVKIGKADGAVVVTVPSGTG 326
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLKNK 332
T++ + + + +LK K
Sbjct: 327 GKLTTEVVRQDPLIAPIAKGQSMGVLKVK 355
>gi|254293994|ref|YP_003060017.1| serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC
49814]
gi|254042525|gb|ACT59320.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC
49814]
Length = 380
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 79/345 (22%), Positives = 150/345 (43%), Gaps = 11/345 (3%)
Query: 1 MRQFLVII---AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
MR F I ++ + S P + A Y ++D +TG + D P+ PAS+T
Sbjct: 1 MRIFSAFIVSTSLLLGSVYTPAYADALNTSADYAYIMDADTGMALYSKDGDTPFIPASMT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLI 112
K+MTAY+VF +++ + L +S+ A S + GS +++ + L+ +I
Sbjct: 61 KIMTAYIVFERIRDGRLTLEDEFVVSETAWREGGAASGGSTMFLELGSKVSVRDLLRGVI 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
++S ND + IAE++ +++ F + M ++ LGL + F N G+ H +A D+A
Sbjct: 121 IQSGNDACIVIAEAISGSQEAFAEEMTRRARELGLDSATFENPTGLYSDNHRISAADLAQ 180
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
L++ DFP++ + K G + PN N +G GADG+KTG SG+ +V SA
Sbjct: 181 LAYLTIKDFPEFYALYSEKEFTWNGIRQPNRNPLLGEVQGADGLKTGHLEISGYGLVGSA 240
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
++ + I V+ G R + ++ F + + + + +
Sbjct: 241 VRDGKRRIIVLNGLDSIAERASEARRVMRSAFVDFKVVEVVQPDQIVGEADVFLGKQKTV 300
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKE---SHFIDFEKITLLKNKIT 334
+ K ++ ++ + + ++ I
Sbjct: 301 ELKAIELMKAALHADSIRDIKVEVVYNGPLKAPLSEGDVVGEIIV 345
>gi|120609035|ref|YP_968713.1| penicillin-binding protein 6 [Acidovorax citrulli AAC00-1]
gi|120587499|gb|ABM30939.1| penicillin-binding protein 6 [Acidovorax citrulli AAC00-1]
Length = 393
Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats.
Identities = 93/332 (28%), Positives = 153/332 (46%), Gaps = 14/332 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
Y LLD G V+A D P ASLTKLMT Y+VF L+ KK L
Sbjct: 31 QAPQPPEIAARNYLLLDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLEQ 90
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S+ A + P S + +++ +K +IV+S ND +A+AE + T + FV+ M
Sbjct: 91 RLPVSERAWKMPGSRMFIDPKMQVPVEDLIKGMIVQSGNDATMALAEGVGGTAENFVKLM 150
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N+ ++ LG+ T + N G+ + GH TTARD+++L+ R+ DFP+YMHY+ K
Sbjct: 151 NDQARALGMKNTAYKNPEGLTEPGHTTTARDLSVLATRLMKDFPEYMHYYSTKHYAYPGT 210
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGALDRN 250
N N + DG+KTG T A+G+ +VA++ + + L++++LGA +
Sbjct: 211 PPSNGTNRNALLFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNIGQRRLLSIVLGAASES 270
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEE---VCTTQKEII 304
R S LL+ G+ K + + + N + + V
Sbjct: 271 ARANESQKLLNWGYTAYDAVKLFDAGQPAATPALWKGVQNTIKIGRPDPIVVTVPSGSAG 330
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
TQ+ + + I LK + ++
Sbjct: 331 KITTQVVRQDPLVAPLTKGQSIGTLKVSLGEQ 362
>gi|281500691|pdb|3A3J|A Chain A, Crystal Structures Of Penicillin Binding Protein 5 From
Haemophilus Influenzae
Length = 344
Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats.
Identities = 88/323 (27%), Positives = 138/323 (42%), Gaps = 9/323 (2%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T +
Sbjct: 2 VTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTDMV 61
Query: 81 TISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
TI ++A S + +++ + + +IV S ND VA+AE + FV+
Sbjct: 62 TIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFVET 121
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN + GL T+F HG+ Y++ARDMAI+ I D P+ + K
Sbjct: 122 MNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTFNK 181
Query: 198 KKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKV 255
K PN N + DGMKTG T +G+N+VASA + LI+V++G R
Sbjct: 182 IKQPNRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGREVE 241
Query: 256 SASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
S LL GF N K + + Y + ++ + T + + +
Sbjct: 242 SKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGAFMDHFITIPKGKQSEVKAR 301
Query: 312 EAKDKESHFIDFEKITLLKNKIT 334
++ K ++ +
Sbjct: 302 YELADKNLQAPLAKGQVIGKVVY 324
>gi|154497956|ref|ZP_02036334.1| hypothetical protein BACCAP_01936 [Bacteroides capillosus ATCC
29799]
gi|150272946|gb|EDN00103.1| hypothetical protein BACCAP_01936 [Bacteroides capillosus ATCC
29799]
Length = 392
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 85/339 (25%), Positives = 139/339 (41%), Gaps = 13/339 (3%)
Query: 1 MRQFLVIIAMAMLSN----IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ + A+L + + L+D +G V+ E D AS+
Sbjct: 1 MKRVFAAMTAAVLCLTWLPLSAGAAGEPGVSASCAILVDAESGRVLMEKNADEERAIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TKLMTA V L +TI K + S+ ++G +TL L L++ S
Sbjct: 61 TKLMTALVAVESTS----DLDRTVTIQKEWTLAEGSSMYLREGEELTLRELLYGLLLVSG 116
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A+AIA FV+ MN ++ LG+ THF+N +G+ GHY+TA DMA L
Sbjct: 117 NDAALAIAGFCAGDTDTFVEWMNLRAQELGMEHTHFVNPNGLPAEGHYSTAADMAKL-AI 175
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+ + P K + + G+ N N + + G GMKTG+T A+G +V+ A +
Sbjct: 176 VVMEQPDLAEIVGTKSVTMAGRTMTNHNKLLWRYEGCVGMKTGYTDAAGRTLVSCAERDG 235
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296
Q LIAV L A + A++ GF + + V + +V
Sbjct: 236 QRLIAVTLNAPND---WADHAAMFDYGFSQWPSILLASAGRDFRTLPVTGSLVRFVPVQV 292
Query: 297 CTTQKEIINYNTQMKEAKDKESH-FIDFEKITLLKNKIT 334
+ + + ++ D E+ + +
Sbjct: 293 ERDVRYPLAADERVTVKIDLPDQVEAPVEEGDIAGSLTY 331
>gi|148825690|ref|YP_001290443.1| hypothetical protein CGSHiEE_03165 [Haemophilus influenzae PittEE]
gi|148715850|gb|ABQ98060.1| hypothetical protein CGSHiEE_03165 [Haemophilus influenzae PittEE]
Length = 367
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 88/326 (26%), Positives = 139/326 (42%), Gaps = 9/326 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
F Y L+D N+G ++ PD PASLTK+MT+YVV LK+ K T
Sbjct: 3 FGVTPPQITAQTYVLMDYNSGAILTALNPDQRQYPASLTKMMTSYVVGVALKQGKIHNTD 62
Query: 79 PITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+TI ++A S + +++ + + +IV S ND VA+AE + FV
Sbjct: 63 MVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIVVSGNDATVALAEHISGNVPNFV 122
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
+ MN + GL T+F HG+ Y++ARDMAI+ I D P+ + K
Sbjct: 123 ETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDMAIIGAHIIRDLPEEYKIYSEKDFTF 182
Query: 196 KGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRN 253
K N N + DGMKTG T +G+N+VASA + LI+V++G R
Sbjct: 183 NKIKQANRNGLLWDKTINVDGMKTGHTSQAGYNLVASATTSNNMRLISVVMGVPTYKGRE 242
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
S LL GF N K + + Y + ++ + T + +
Sbjct: 243 VESKKLLQWGFANFETFKTLEAGKEISEQRVYYGDKNSVKLGALMDHFITIPKGKQSEVK 302
Query: 310 MKEAKDKESHFIDFEKITLLKNKITK 335
+ ++ K ++ + +
Sbjct: 303 ARYELADKNLQAPLAKGQVIGKVVYQ 328
>gi|298291753|ref|YP_003693692.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
gi|296928264|gb|ADH89073.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
Length = 414
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 86/340 (25%), Positives = 132/340 (38%), Gaps = 11/340 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+R L+ + F ++A P L+D +G V+ E D P S+
Sbjct: 18 LRTVLLASFVLFCLAAFVLPALAQTQPEIAAPQAILMDFESGTVLFEKAADTQSAPGSIA 77
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLI 112
KLM+ V+F + E + T +S+ A + S++ + + L+ I
Sbjct: 78 KLMSLAVIFREITEGRLSPDTEFKVSEYAWRRGGAPSGGATMFAALNSSIKVSDLLRGAI 137
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND + +AE + E F MN +K LGL+ + F N++G+ TTARDMA
Sbjct: 138 IPSGNDATIILAEGISGNELGFSVKMNEEAKRLGLTGSSFHNSNGLSDPDQKTTARDMAK 197
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
++ I D+P F + N N +G LGADG TG+ GFN+V SA
Sbjct: 198 IATHIIRDYPDLYKIFSEPDFLWSKIRQSNRNPLLGMSLGADGFMTGYLKEGGFNLVGSA 257
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEV 289
+Q +Q LI VILG R + + LL GF + R +
Sbjct: 258 VQNNQRLIVVILGGKSEKERAEDARKLLEWGFRSFESRLLFEPGQIVGEATLYGGERGGA 317
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
P + + EK L
Sbjct: 318 PLTGTGPIRVLVPRSGDERVTAKIRFDGPIRAPVEKGQQL 357
>gi|298368809|ref|ZP_06980127.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria sp. oral taxon
014 str. F0314]
gi|298282812|gb|EFI24299.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria sp. oral taxon
014 str. F0314]
Length = 450
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 79/331 (23%), Positives = 142/331 (42%), Gaps = 18/331 (5%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + + D + V+A N PD+ PASLTK+MTAY+ F L++
Sbjct: 79 SPAAVPQIAATAFIVKDLQSNQVLAANNPDNLIEPASLTKMMTAYLTFKALEDGTLKADE 138
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL----------- 127
+T+S S +++ + LK +IV+S ND A+ +AE++
Sbjct: 139 MLTVSDAGWHTEGSRMFLNPHVPVSVSDLLKGMIVQSGNDAAITLAEAIGGIGNDSEQTE 198
Query: 128 --CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+ FV MN +K LG++ T F N G+ H +T D+A+L+ + D+P+Y
Sbjct: 199 TPKPPLENFVAMMNMEAKRLGMNHTRFNNPTGLASERHLSTVSDLALLAAALIRDYPKYY 258
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
F +K G + PN N + DG+KTG T ++G+N+ AS+ + + +I +++G
Sbjct: 259 PIFSLKSFRYNGIEQPNRNLLLFRDSSVDGLKTGHTESAGYNLAASSNRNGRRIITIVVG 318
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQK 301
A R S LL+ K + Y+ + + +++ T
Sbjct: 319 AESTEARASESGKLLNWALQAFDTPKLYDAGEVISQVKVYKGSANAVKIGFADDTYITIP 378
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++ EK ++L
Sbjct: 379 HGSGHRIRPVLETEQP-VLAPIEKGSILGKL 408
>gi|254995301|ref|ZP_05277491.1| hypothetical protein AmarM_05055 [Anaplasma marginale str.
Mississippi]
Length = 370
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 79/343 (23%), Positives = 143/343 (41%), Gaps = 8/343 (2%)
Query: 1 MRQFLV-----IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+R+FL+ L+ P ++ K P+ + + + V+ E+ D P+S
Sbjct: 2 IRRFLLSFLVPAFCCLALAPARPSYALKMHTKAPHAIVYELGSRTVLFEHDADVAAAPSS 61
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KLMT Y+VF L + ++S++A + S++ K G + + + + V S
Sbjct: 62 MSKLMTLYLVFQHLHAGLIKMDDTFSVSESAWKRGGSSAFLKVGQMVKVRDLIMGAAVSS 121
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND +A+AE + ++++FV+ +N+ +K + L+ + F N G GH + RD+ LS
Sbjct: 122 GNDACIALAEGVSGSQEQFVEDINSLAKEMNLAHSSFTNVTGWPDEGHLMSVRDILTLSV 181
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
RI DFP+Y H F K G N N + +G DG+KTG T +G+ I ASA +
Sbjct: 182 RIFEDFPEYYHVFGEKQFTYNGVTQKNYNTLLNYNIGVDGIKTGHTEKAGYGIAASAQKD 241
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNI 292
++ + V+ G R + LL F + + V
Sbjct: 242 NRRVFVVVNGLKTETERAYETKRLLLYAFNRFETKVVFPAGSVVGEVKVWNGRKGTVQMH 301
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + K + +K + +
Sbjct: 302 VRDDVVISYPRDLSKSVKAFVSYKSTVAAPVKKGQEIGTLSVQ 344
>gi|210615757|ref|ZP_03290738.1| hypothetical protein CLONEX_02956 [Clostridium nexile DSM 1787]
gi|210150093|gb|EEA81102.1| hypothetical protein CLONEX_02956 [Clostridium nexile DSM 1787]
Length = 401
Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats.
Identities = 104/371 (28%), Positives = 178/371 (47%), Gaps = 36/371 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---------------------TNKLPYYTLLDTNTG 39
M++FL + ++++ + +++E P L++ +TG
Sbjct: 1 MKRFL-ALMVSLVLCVTDVCAMSESEGILYEETKAGTEESAFGELEISTPSAVLMEVSTG 59
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99
VI E D PAS+TK+MT ++F L+++K LT +++S+ A+ S + G
Sbjct: 60 KVIYEKAADEQLPPASVTKVMTLLLIFDALEDEKIKLTDIVSVSEYAASMGGSQVFLEPG 119
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
T T+D +K + V SAND VA+AE + +E++FV MN +K LG+ T+F+N +G+
Sbjct: 120 ETQTVDTMIKCIAVASANDACVAMAEHIWGSEEEFVAKMNARAKELGMEHTNFLNCNGLD 179
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFL 211
GH TTARD+A++S + T +P+ Y I I NTN + +
Sbjct: 180 ADGHVTTARDIALMSRELITRYPKIHDYSTIWMENITHTTKKGTTEFGLANTNKLIRQYQ 239
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
A G+KTG T + F + A+A + D LIAVI+ A D R K + +LL+ GF T K
Sbjct: 240 YATGLKTGSTSKAKFCLSATAKKDDLELIAVIMAAPDPKARFKDATTLLNYGFGKCTKYK 299
Query: 272 KIN--YIIKDFYQQNLSNEVPNISEE----VCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ + + E+P E + TT + +++ ++K++ EK
Sbjct: 300 DTTPFELEPLKIRGGIEKEMPVAVETEFQYIDTTGANLSGIKRKIEIDQEKQAPVKKGEK 359
Query: 326 ITLLKNKITKK 336
+ + + K
Sbjct: 360 VGTVTYLLNGK 370
>gi|323136276|ref|ZP_08071358.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC
49242]
gi|322398350|gb|EFY00870.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC
49242]
Length = 393
Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats.
Identities = 86/351 (24%), Positives = 137/351 (39%), Gaps = 18/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M F +IA ++ L+ A +P L+D T V+ E D PAS
Sbjct: 1 MLSFRYLIAAVFVAVSSLFSGSALAQAFQTSVPNAILIDAGTNTVLFEKGADDLVTPAST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN-----STFKKGSTMTLDNALKLL 111
K++TA ++F L E + L T+S+ A + K S T+++ L+ L
Sbjct: 61 VKILTAEMIFRELTEGRLKLGDVFTVSEYAWRNGGAPAGGSAMFLKVNSQATVEDLLRGL 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ S ND A+ +AE + +E+ FV MN + LGL + F N G T R++A
Sbjct: 121 LIDSGNDAALVLAEGVAGSEEAFVMRMNKRASELGLVKSRFGNPWGKASDDQKVTPREVA 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
L+ + +P + YF K + N N + +GADG+KTG F IV S
Sbjct: 181 KLALHVIRTYPDFYKYFGEKEFTWNNIRQQNRNPLLTMSIGADGLKTGNIEKGDFGIVGS 240
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD------FYQQNL 285
A Q + LI + GA R + + LL GF N ++ Q
Sbjct: 241 ANQEGRRLIVAVYGAKTAKERAEEARKLLQWGFRNFEEKDLFKAGEPIGPAQIYGGVQGS 300
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ V +V + ++ E + K+
Sbjct: 301 VDLVSKTDVKVLLPRGGTEKLTGKIVYE---GPVIAPVEAGAGIGRLEVKR 348
>gi|313901752|ref|ZP_07835179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
subterraneus DSM 13965]
gi|313467988|gb|EFR63475.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
subterraneus DSM 13965]
Length = 405
Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats.
Identities = 81/323 (25%), Positives = 145/323 (44%), Gaps = 13/323 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L+D TG + D P PASL K+MT +VF L++ + L + +S+
Sbjct: 44 EIQARSALLVDATTGQELFAQKADEPIPPASLAKIMTLDLVFHALEQGQITLDQEVPVSE 103
Query: 85 NASEYP-------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
A PS + G + +++ ++ + + S ND + +AE++ +E+ FVQ
Sbjct: 104 AAWRLSVQAGLGGPSAMFLEVGERVRIEDLIRGVAIASGNDASTVLAEAVAGSEEAFVQR 163
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN + LG+ + F N+HG+ + TARDMA L+ + + P + Y +K E K
Sbjct: 164 MNQHAAELGMKDSVFSNSHGLPGGEQHVTARDMARLALHVLKEHPGILKYTSMKYFEWKD 223
Query: 198 KK-YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
PN N + DG+KTG +G+++VA+A +GD+ L++V++GA R S
Sbjct: 224 FAAQPNYNRLLFRDPRVDGLKTGHLSEAGYHLVATAREGDRRLVSVVMGAASDALRVGES 283
Query: 257 ASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
LL GF T+ + + ++ +E+ T + + +
Sbjct: 284 QRLLDYGFQQFTNTRVAFGENGRQVVPVFKGAQPQVTVQPAEDPVVTVPKTAAGEVRSRV 343
Query: 313 AKDKESHFIDFEKITLLKNKITK 335
+ KE E+ + +
Sbjct: 344 -ELKEPLVAPLERGQRVGTLTIE 365
>gi|90411493|ref|ZP_01219504.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK]
gi|90327706|gb|EAS44049.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium profundum 3TCK]
Length = 400
Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats.
Identities = 100/349 (28%), Positives = 159/349 (45%), Gaps = 17/349 (4%)
Query: 1 MRQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++F I + S + + Y L+D +G +IAEN P
Sbjct: 1 MKRFFGRIVLGAFSVHMLIATKVLAVVIPEPPALNAKGYVLMDFQSGSIIAENNPRDALA 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALK 109
PASLTKLMTAYVV + K+ +T+ +NA S K G ++++N ++
Sbjct: 61 PASLTKLMTAYVVGQEINTKRLKWDDMVTVGENAWSLKFPDSSKMFIKPGDEISVENLMR 120
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+I++S ND +VA+AE + +E FV MN +K L L T F+NAHG+ G T+ D
Sbjct: 121 GVIIQSGNDASVALAEYIAGSESGFVNLMNGWAKTLKLQDTRFINAHGLDGEGIQTSPAD 180
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNI 228
MA L I D P +Q K N N + L DG KTG+T +G+++
Sbjct: 181 MATLMRHIIRDVPDVYALYQDKQFAWNDITQFNRNKLLWDKALNVDGGKTGYTEQAGYSL 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF----YQQN 284
V+SA +G + LIAV++G + R + S +LLS GF +K + F ++
Sbjct: 241 VSSATEGSRRLIAVVMGTPSQTIRAEASKNLLSYGFRFYDTQKVVQANESVFSYEIWKGA 300
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
++++ T + + K + F K ++ N +
Sbjct: 301 TDKVTLGVTDDKYITLPRNM-FKQLTKIVDIDQPLFAPIVKGDVVGNMV 348
>gi|332971215|gb|EGK10178.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437]
Length = 418
Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats.
Identities = 82/348 (23%), Positives = 141/348 (40%), Gaps = 25/348 (7%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+++ + + Y L++ TG V+A HP+ PASLTK+MT Y+V
Sbjct: 31 LLSVGEVFAEPQAEPLDIQTRSYVLMEMETGRVLAGKEEKHPYPPASLTKIMTEYLVLEE 90
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+K + + ISKNA+ + G T++ + + SAND +VA+AE +
Sbjct: 91 VKSGRIRWKDEVKISKNAASIGEAQVNLVAGEKRTVEELFHAMAIHSANDASVALAEHIS 150
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----------GHYTTARDMAILSWRIK 178
+E+ FV MN +K LGL +HF+N G+ H +A D+A L+ R+
Sbjct: 151 GSERAFVGKMNKEAKRLGLKKSHFINCTGLPSRSYPQPPEVKGEHRMSAEDIARLTRRLL 210
Query: 179 TDFPQYMHYFQIKGLEIKGKK-----YPNTNWA----VGTFLGADGMKTGFTCASGFNIV 229
D PQ + + + + PN+N + G DG+KTG+T +G++
Sbjct: 211 RDHPQVIRTTSLPEYIFRQGEKRELILPNSNRMLPGSPHFYDGVDGVKTGYTREAGYSFT 270
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY------QQ 283
+A + LI V++G ++ R + LL GF N + + +
Sbjct: 271 GTARRDGMRLITVVMGTDSKSRRFAETEKLLDFGFQNYGMKTLLKKGKPVPKHGKVALRG 330
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
EVP ++ + K ++
Sbjct: 331 GEETEVPVVAGASRALPVRNGEKTPYTIRVEFKSGLEAPIRSGDVVGT 378
>gi|326402423|ref|YP_004282504.1| serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium multivorum
AIU301]
gi|325049284|dbj|BAJ79622.1| serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium multivorum
AIU301]
Length = 422
Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats.
Identities = 90/326 (27%), Positives = 136/326 (41%), Gaps = 10/326 (3%)
Query: 16 IFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + + T Y L+D +TG VIA PD PW PASLTKLMTAY+ + +
Sbjct: 65 AIPGVPMPPTLPQQASYVLMDADTGAVIAAKAPDQPWPPASLTKLMTAYLTYQAVAHGSL 124
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ + +S +A S G T+T+D L LI+ S ND AVA+A+++ + F
Sbjct: 125 KMDQTVPVSVSAWHTGGSRMFISPGMTVTVDQLLHGLIIDSGNDAAVALAQAVAGSRSGF 184
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MN+ +K LGL +TH+ N G+ TTA D+A LS I +PQ++ K
Sbjct: 185 VGLMNHEAKALGLKSTHYTNVDGLPNPDLRTTAMDVAKLSRDIVRTYPQFLKISVKKHFT 244
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ + N + DG+KTG T +G I A+A++ + LIAV+LG
Sbjct: 245 FDKIRQRSWNPVLFHDPTVDGLKTGRTKEAGHCIDATALRNGRRLIAVVLGGPSWTVSTH 304
Query: 255 VSASLLSMGFYNKTDRKKINYIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+LL G+ + K Y+ P S + T
Sbjct: 305 DIEALLDYGYQFYANAKVAVAGKPAGTLKAPLYRTTAVAVGPAHSITMTIPALAAKTLKT 364
Query: 309 QMKEAKDKESHFIDFEKITLLKNKIT 334
+ + +
Sbjct: 365 SVALD---PPPAAGVHRGQTVGTITV 387
>gi|148259268|ref|YP_001233395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum
JF-5]
gi|146400949|gb|ABQ29476.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Acidiphilium cryptum JF-5]
Length = 423
Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats.
Identities = 90/326 (27%), Positives = 136/326 (41%), Gaps = 10/326 (3%)
Query: 16 IFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P + + T Y L+D +TG VIA PD PW PASLTKLMTAY+ + +
Sbjct: 66 AIPGVPMPPTLPQQASYVLMDADTGAVIAAKAPDQPWPPASLTKLMTAYLTYQAVAHGSL 125
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ + +S +A S G T+T+D L LI+ S ND AVA+A+++ + F
Sbjct: 126 KMDQTVPVSVSAWHTGGSRMFISPGMTVTVDQLLHGLIIDSGNDAAVALAQAVAGSRSGF 185
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MN+ +K LGL +TH+ N G+ TTA D+A LS I +PQ++ K
Sbjct: 186 VGLMNHEAKALGLKSTHYTNVDGLPNPDLRTTAMDVAKLSRDIVRTYPQFLKISVKKHFT 245
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ + N + DG+KTG T +G I A+A++ + LIAV+LG
Sbjct: 246 FDKIRQRSWNPVLFHDPTVDGLKTGRTKEAGHCIDATALRNGRRLIAVVLGGPSWTVSTH 305
Query: 255 VSASLLSMGFYNKTDRKKINYIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+LL G+ + K Y+ P S + T
Sbjct: 306 DIEALLDYGYQFYANAKVAVAGKPAGTLKAPLYRTTAVAVGPAHSITMTIPALAAKTLKT 365
Query: 309 QMKEAKDKESHFIDFEKITLLKNKIT 334
+ + +
Sbjct: 366 SVALD---PPPAAGVHRGQTVGTITV 388
>gi|225629999|ref|YP_002726790.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia sp. wRi]
gi|225591980|gb|ACN94999.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia sp. wRi]
Length = 368
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 82/324 (25%), Positives = 148/324 (45%), Gaps = 5/324 (1%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
F S K +LD + I ++ D P+S++KLMT Y+ F +LK
Sbjct: 15 PFSSYSYQFRTKAKQAVVLDLASDSFIFDHNSDEKMAPSSMSKLMTLYIAFDYLKAGIIH 74
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ +S+ A E S+ K+G +T+ L+ + + S ND + +AE + +E+ FV
Sbjct: 75 MEDKFRVSRKAWERKGSSMFLKEGQFVTVRELLEGITIVSGNDACITLAEGIAGSEENFV 134
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
MN ++NL L+ +HF+N+ G H+ +A+D+ +L+ RI TDFP+Y F + L
Sbjct: 135 AEMNEVAQNLNLNDSHFVNSSGWPDGDHFMSAKDLVMLAKRIFTDFPEYYDLFSEQYLTY 194
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
N N + +G DG+KTG+T A G+ IVASA + D+ + AV+ G R +
Sbjct: 195 NEIVQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVASAKRNDRRIFAVVNGLNTEKERIEE 254
Query: 256 SASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+ L+ + +K + ++ +V T ++ +++
Sbjct: 255 AKRLIQYSLNHFNTKKIFAQDSVVEEVNVLYGKDKKVPITVANDVTITYNRKLHDQIKVR 314
Query: 312 EAKDKESHFIDFEKITLLKNKITK 335
+ K+ +K + +
Sbjct: 315 I-EYKDMIPAPIKKGQEVGKVFVE 337
>gi|160895834|ref|YP_001561416.1| serine-type D-Ala-D-Ala carboxypeptidase [Delftia acidovorans
SPH-1]
gi|160361418|gb|ABX33031.1| Serine-type D-Ala-D-Ala carboxypeptidase [Delftia acidovorans
SPH-1]
Length = 389
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 93/329 (28%), Positives = 149/329 (45%), Gaps = 13/329 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
Y L+D V+ D P ASLTKLMT Y+VF L+ KK L
Sbjct: 27 TPPQPPEIAARNYLLVDVTANQVLGAKDIDAPIEQASLTKLMTGYLVFDALRAKKITLEQ 86
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S+ A + P S + +D+ +K +IV+S ND +A+AE + + + FV+ M
Sbjct: 87 RLPVSERAWKMPGSRMFIDPKMQVPVDDLIKGMIVQSGNDATMALAEGVGGSAENFVRLM 146
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K LG+ T + N G+ + GH TTARD++IL+ R+ DFP+YMHY+ K G
Sbjct: 147 NEQAKALGMKNTSYKNPEGLTEPGHLTTARDLSILAQRLMQDFPEYMHYYSTKKYFYPGT 206
Query: 199 KY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGALDRN 250
N N + DG+KTG T A+G+ +VA+A + + LI+++LGA N
Sbjct: 207 PASNGTNRNSLLFRDPTVDGLKTGHTAAAGYCLVATAKRDLPNVGSRRLISIVLGAASEN 266
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S LL+ G+ K + + ++ + + + T
Sbjct: 267 ARANESQKLLNWGYAAFDSVKLFDAEQAVATPEVWKGKANTVKIGRTTPIVVTVPAGSGG 326
Query: 307 NTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ F K + K
Sbjct: 327 KLSTEVVR-QDPLIAPFTKGQAMGTLKVK 354
>gi|238758038|ref|ZP_04619219.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC
35236]
gi|238703792|gb|EEP96328.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia aldovae ATCC
35236]
Length = 403
Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats.
Identities = 87/328 (26%), Positives = 138/328 (42%), Gaps = 11/328 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 32 VNLKTMIPGVPQIDAEAYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G + + + + ++S ND VA+A+ +
Sbjct: 92 IGPEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN K LGL T F HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAI 211
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA G LI+ +LG
Sbjct: 212 YKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++ T
Sbjct: 272 HTYKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDSDRVQLGVDKDAYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + K ++
Sbjct: 332 GRMKDLKASYVLNTPEIHAPLAKNQVVG 359
>gi|159043475|ref|YP_001532269.1| serine-type D-Ala-D-Ala carboxypeptidase [Dinoroseobacter shibae
DFL 12]
gi|157911235|gb|ABV92668.1| serine-type D-Ala-D-Ala carboxypeptidase [Dinoroseobacter shibae
DFL 12]
Length = 393
Score = 192 bits (486), Expect = 7e-47, Method: Composition-based stats.
Identities = 85/324 (26%), Positives = 137/324 (42%), Gaps = 7/324 (2%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK-AML 76
P A + ++D TG V+ E D P PAS++KLMT Y++F L++ L
Sbjct: 19 PAAQAAFETRAEAAYVVDVTTGTVLLEKNADVPLPPASMSKLMTLYMLFEALEKNPAVTL 78
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T +S A S + T ++ +K +IV+S ND V +AE L TE+ F +
Sbjct: 79 DTTFRVSARAMAKGGSTMFLTERDRPTAEDLIKGIIVQSGNDATVVVAEGLAGTEEAFSR 138
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
M +GL+ + F N+ G H + RD+ IL+ RI D+P+Y YF +
Sbjct: 139 LMTEKGAAIGLTQSTFTNSSGWPDPQHRMSMRDLGILTQRIIEDYPEYYGYFAMSEWGFD 198
Query: 197 ---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ N N + +GADG+KTG T +G+ +V SA QG + +I VI G R
Sbjct: 199 GRAPQNRFNRNPLLKLDIGADGLKTGHTQEAGYGLVGSAQQGARRIIFVITGLETDRARA 258
Query: 254 KVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+ S ++S F ++ + V +S E ++ + +
Sbjct: 259 EESERIVSWAFRQFVEKDMAEAGRHLADLPVWVGEAETVGLVSPEDIRPLVPMVASGSLV 318
Query: 311 KEAKDKESHFIDFEKITLLKNKIT 334
E + L +
Sbjct: 319 AEIEADTPIAAPITAGQQLAELVI 342
>gi|294635241|ref|ZP_06713743.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
23685]
gi|291091358|gb|EFE23919.1| D-alanyl-D-alanine carboxypeptidase DacA [Edwardsiella tarda ATCC
23685]
Length = 387
Score = 192 bits (486), Expect = 8e-47, Method: Composition-based stats.
Identities = 89/326 (27%), Positives = 140/326 (42%), Gaps = 12/326 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
F + + L+D TG ++A+ PD NPASLTKLMT YVV L + + L
Sbjct: 22 SAFPLVPPHIDAASWVLMDAQTGQILAQGNPDARRNPASLTKLMTNYVVERALDQGRIGL 81
Query: 77 TTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
P+ I +A + K G T+ + ++ +I+ S ND VA+A+ +
Sbjct: 82 NDPVPIGNDAWATRNPSFKGSSLMFLKPGDKATVSDLIRGIIIDSGNDACVALADYVSGD 141
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+ FV+ MN + L L THF HG+ G Y++ARD+A L+ I Y H++
Sbjct: 142 QAGFVRLMNGYVQQLHLQNTHFETVHGLDAPGQYSSARDLAQLARAIILHEQPYYHFYAQ 201
Query: 191 KGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVA-SAIQGDQSLIAVILGALD 248
K L G N N L DGMKTG T ++GFN+VA S Q LIAV++GA
Sbjct: 202 KSLSWNGVTQNNRNGLLWDQDLHVDGMKTGHTASAGFNLVASSIDPHGQRLIAVVMGADS 261
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEII 304
R + LL G N + + + + + + T +
Sbjct: 262 SRGREVQAKKLLQWGERNFETVQLVARDRAITSQQVWYGQQKTVALGNPQNIYYTLPKGE 321
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + + + ++
Sbjct: 322 LRDVKVDYTLNHDYLEAPLARGQVVG 347
>gi|163797884|ref|ZP_02191828.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199]
gi|159176846|gb|EDP61414.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium BAL199]
Length = 421
Score = 192 bits (486), Expect = 8e-47, Method: Composition-based stats.
Identities = 95/335 (28%), Positives = 163/335 (48%), Gaps = 5/335 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ L I + +L P + AE +LD +TG ++ E +PASLTK+MT
Sbjct: 9 RILATIVLGLLWLAAPSMGRAEVTAKYAALVLDADTGTILFERQAAAERHPASLTKIMTL 68
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ K L + +S A+ PS + G ++ +A+ L+ KSAND+AV
Sbjct: 69 YMLFDAIEHGKISLNQRLKVSARAAGQAPSKLGLQPGDSIRAKDAILALVTKSANDVAVV 128
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE+L +TE +F + M + ++ LG+ T F NA G+ +TA DMA+L+ I+ DFP
Sbjct: 129 VAEALGETEPRFARLMTDRARRLGMRNTTFRNASGLHHPNQISTAYDMAMLALAIRRDFP 188
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ YF + G++Y N N +G + G DG+KTG+ ASGFN+VAS + + LI V
Sbjct: 189 KEYAYFSTRSFSWGGREYGNHNKLLGHYEGTDGIKTGYIGASGFNLVASVERNGRRLIGV 248
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEEVCT 298
+ G R++ LL+ GF + + + + ++ V S +
Sbjct: 249 VFGGRSGPLRDRHMKRLLTSGFEKADEIRVAHVVPPIPHPRPEREVQLASVETASVDNSN 308
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
++ +++ E ++ +I
Sbjct: 309 PVHALVQVAPEVESGSRDEGAEWGI-QVGAYATEI 342
>gi|317121887|ref|YP_004101890.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
marianensis DSM 12885]
gi|315591867|gb|ADU51163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
marianensis DSM 12885]
Length = 438
Score = 192 bits (486), Expect = 8e-47, Method: Composition-based stats.
Identities = 82/325 (25%), Positives = 143/325 (44%), Gaps = 17/325 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L+D TG + D PASL K+MT +VF L+E + L + +S+
Sbjct: 77 NIQARSAVLVDATTGQELYAQNADELIPPASLAKIMTLDLVFHALEEGRLALDQQVPVSE 136
Query: 85 NASEYP-------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
A PS + G + +++ ++ + V S ND + +AE++ +E+ FV+
Sbjct: 137 AAWRLSVQAGLGGPSAMFLEVGERVRIEDLIRGVAVASGNDASTVLAEAVAGSEEAFVRL 196
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN + +G+ + F N+HG+ + TARDMA L+ + P + Y +K E K
Sbjct: 197 MNQHAAEIGMKNSVFSNSHGLPGGQQHVTARDMARLALHVLEAHPDILRYTSLKYFEWKD 256
Query: 198 K-KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
PN N + DG+KTG +G+++VA+A GD+ L++V+LGA R S
Sbjct: 257 FAPQPNYNRLIFRDPRVDGLKTGHLSEAGYHLVATARDGDRRLVSVVLGAASDALRVGES 316
Query: 257 ASLLSMGFYNKTDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
LL GF T+ + + ++ P + V + + T++
Sbjct: 317 QRLLDYGFQQFTNTRVAFGENGRQGVSVYKGARSQVTVEPATAPVVTVPKTDAGEVRTRV 376
Query: 311 KEAKDKESHFIDFEKITLLKNKITK 335
+ +E EK + +
Sbjct: 377 ---EMQEPLVAPLEKGQRVGTLTIE 398
>gi|326315218|ref|YP_004232890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323372054|gb|ADX44323.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 393
Score = 192 bits (486), Expect = 8e-47, Method: Composition-based stats.
Identities = 98/358 (27%), Positives = 159/358 (44%), Gaps = 22/358 (6%)
Query: 1 MRQFLVIIAMAMLSNIFP--------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+ FL ++ ++ Y LLD +G V+A D P
Sbjct: 5 MKSFLPLLRSFAMAAALAPAALWAQVQAPQPPEIAARNYLLLDVTSGQVLAAKDIDAPVE 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
ASLTKLMT Y+VF L +K L + +S A + P S + +D+ LK +I
Sbjct: 65 QASLTKLMTGYLVFDALSSRKITLEQKLPVSVLAWKMPGSRMFIDPKMQVPVDDLLKGMI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND ++A+AE + + + FV+ MN+ +K LG+ T + N G+ + GH TTARD++I
Sbjct: 125 VQSGNDASMALAEGVGGSAENFVKLMNDQAKALGMKNTAYKNPEGLTEPGHTTTARDLSI 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEI---KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
L+ R+ DFP+YMHY+ K N N + DG+KTG T A+G+ +V
Sbjct: 185 LATRLMKDFPEYMHYYSTKHYAYPGTPPSNGTNRNSLLFRDPTVDGLKTGHTAAAGYCLV 244
Query: 230 ASAIQG-----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFY 281
A++ + + L++++LG N R S LL+ G+ K +
Sbjct: 245 ATSKRDFPNVGQRRLLSIVLGTASENARANESQKLLNWGYTAYDAVKLFDGGQPAATPAL 304
Query: 282 QQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ N + + V +TQ+ + + I LK + +
Sbjct: 305 WKGTQNTIKIGRPDPIVVTVPSGSAGKISTQIVRQDPLVAPLTKGQSIGTLKVSLGDQ 362
>gi|163746820|ref|ZP_02154177.1| D-alanyl-D-alanine carboxypeptidase [Oceanibulbus indolifex HEL-45]
gi|161379934|gb|EDQ04346.1| D-alanyl-D-alanine carboxypeptidase [Oceanibulbus indolifex HEL-45]
Length = 396
Score = 192 bits (486), Expect = 8e-47, Method: Composition-based stats.
Identities = 80/343 (23%), Positives = 146/343 (42%), Gaps = 14/343 (4%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ A A+ + + A + +LD TG V+ D P PAS++KLMT Y+ F
Sbjct: 4 LFAAAVALVLTLQPAAAFDTRATAAYVLDQTTGTVLLAKNADEPLPPASMSKLMTLYMAF 63
Query: 67 SF----LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ L + +S++A Y S +++++ ++ +IV S ND +
Sbjct: 64 EAVERGKQNGGLDLVEELPVSEHAMSYGGSTMFLDTTDRVSVEDLIRGVIVLSGNDASAV 123
Query: 123 IAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
IAE+L E F + M ++ +G++ + F N++G Q GH + RD+ +L+ RI +D
Sbjct: 124 IAEALSPDGTEYGFARLMTQRAQQMGMTNSTFANSNGWPQAGHLMSVRDLGLLANRIISD 183
Query: 181 FPQYMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+PQ+ F + + N N +G +GADG+KTG T +G+ +V SA QGD+
Sbjct: 184 YPQFYPLFAEREFAFDGRAPQNKLNRNPLLGLGIGADGLKTGHTNEAGYGLVGSAKQGDR 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNIS 293
+I V+ G R + + S+++ F T R + + +
Sbjct: 244 RVIFVLSGLDSAAARAQEAESVVNWAFRQFTQRDLGQAGKQIANAPVALGTTQSVGLELK 303
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+++ + K L + +
Sbjct: 304 DDLSMLVPVTGGDEIAAEVI-YTGPFQAPITKGDELGELVVDR 345
>gi|170730550|ref|YP_001775983.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M12]
gi|167965343|gb|ACA12353.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa M12]
Length = 347
Score = 192 bits (486), Expect = 9e-47, Method: Composition-based stats.
Identities = 84/314 (26%), Positives = 151/314 (48%), Gaps = 11/314 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88
+D +G V+A PASLTK+MT+YV+ + +K K + +++NA
Sbjct: 1 MDFASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQMMMTENAWRKGGAG 60
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S S F T L++ + +IV+S ND A+A+AE + +E+ F MN+ ++ +G+
Sbjct: 61 TDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGMK 120
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+HF++A G+ GHY++A DMA+L + D P+ Y ++K L + G K N N +
Sbjct: 121 NSHFVDATGLSAEGHYSSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLLW 180
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF
Sbjct: 181 RDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFE 240
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTT------QKEIINYNTQMKEAKDKESHFID 322
+ +V + V + + ++ ++ E+
Sbjct: 241 THTLYEPGKVVIKHKIWKGQVSEVQLGVTRPLFVTVQRGRYNDLKPSIEVPRNLEAPIKP 300
Query: 323 FEKITLLKNKITKK 336
+ + +K + K
Sbjct: 301 GQSVGKVKVTLDGK 314
>gi|226323183|ref|ZP_03798701.1| hypothetical protein COPCOM_00955 [Coprococcus comes ATCC 27758]
gi|225208373|gb|EEG90727.1| hypothetical protein COPCOM_00955 [Coprococcus comes ATCC 27758]
Length = 425
Score = 192 bits (486), Expect = 9e-47, Method: Composition-based stats.
Identities = 87/322 (27%), Positives = 148/322 (45%), Gaps = 11/322 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+++ + G V+ E D PAS+TK+MT ++F L + T +T S+
Sbjct: 69 ELSAESAVIMEASGGQVLLEKNADEKKPPASVTKVMTLLLIFDALADGTITPDTEVTTSE 128
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ S + G T+D +K + V SAND VA+AE + +E FV+ MN S
Sbjct: 129 YAASMGGSQVFLEAGEKQTVDTMIKCIAVASANDACVAMAEKIAGSEPAFVEKMNQRSAG 188
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199
LG++ THF+N +G+ GH TTARD+A++S + T +PQ Y I I
Sbjct: 189 LGMTNTHFVNCNGLDTEGHLTTARDIALMSRELITKYPQIEDYSTIWMENITHTTAKGSS 248
Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
NTN + + A G+KTG T + F + A+A + ++IAV++ D TR K +
Sbjct: 249 EFGLSNTNKLIRQYEYATGLKTGSTSGAKFCLSATARKDGVNMIAVVMAEPDSKTRIKDA 308
Query: 257 ASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
++L+ GF D K + I+ + + + + E + + +++
Sbjct: 309 IAMLNYGFGKCSIYQDEKALEKIVYAEVKHGMQEKAKGETLEGFRYVDTSGSDLSAVEKE 368
Query: 314 KDKESHFIDFEKITLLKNKITK 335
+ +K + I +
Sbjct: 369 VQIQKQTAPVKKGDQIGEVIYR 390
>gi|331085114|ref|ZP_08334200.1| hypothetical protein HMPREF0987_00503 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407897|gb|EGG87387.1| hypothetical protein HMPREF0987_00503 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 397
Score = 192 bits (486), Expect = 9e-47, Method: Composition-based stats.
Identities = 94/362 (25%), Positives = 153/362 (42%), Gaps = 29/362 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET-----------------NKLPYYTLLDTNTGHVIA 43
MR L ++ ++++ ++ L++ +TG +I
Sbjct: 1 MRTILAVV-LSVILCTGTVCAMPPDGKVLQEEVESEKKNELELTAQSAVLMEASTGKIIY 59
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
E + PAS+TK+MT ++ +++ K L +T+S+ A+ S + G T
Sbjct: 60 EKQKEEERPPASVTKVMTMLLILDAVEDGKIKLEDEVTVSEYAASMGGSQVFLEPGEVQT 119
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+D LK + V SAND VA++E + +E+ FV+ MN +K LG+ THF+N +G+ GH
Sbjct: 120 VDTMLKCIAVASANDACVAMSEYISGSEEAFVEQMNVRAKGLGMEHTHFVNCNGLDADGH 179
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADG 215
TTA D+A++S + T P+ Y I I K NTN V + A G
Sbjct: 180 LTTAYDIALMSRELITKHPEIEKYSMIWMENITHKTNKGTSEFGLSNTNKLVRHYPYATG 239
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
+KTG T + F I A+A + LIAVI+ A D R K + +LL+ GF T
Sbjct: 240 LKTGSTSKAKFCISATARKDGMDLIAVIMAAPDSKMRVKDATTLLNYGFGKCTKYVDKEK 299
Query: 276 IIKDFYQ---QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ N + K+ K+ +K T +
Sbjct: 300 GGLKAVKVDGGTKEKVRIEPEAIFQYVDTTGANLSEIQKKLVLKKGLSAPLKKGTTVGKL 359
Query: 333 IT 334
+
Sbjct: 360 VY 361
>gi|255284455|ref|ZP_05349010.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
DSM 14469]
gi|255265000|gb|EET58205.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
DSM 14469]
Length = 508
Score = 192 bits (486), Expect = 1e-46, Method: Composition-based stats.
Identities = 86/322 (26%), Positives = 144/322 (44%), Gaps = 12/322 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P L++ ++G V+ E +PAS+TK+MT ++F L++ L + S
Sbjct: 109 ALTSPSALLMEASSGTVLYEKDAHTRRSPASVTKIMTTLLIFEELEKGTLKLDDEVVTSA 168
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A S ++G T+D LK ++V S ND +VA+AE + TE +FV MN +
Sbjct: 169 HAKSMGGSQVFLEEGEKQTVDTLLKCILVSSGNDASVAMAEHIGGTEAEFVSRMNEKAAE 228
Query: 145 LGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---- 199
LG++ THF + G+ HYTTA D+A++S + T FPQ Y I I
Sbjct: 229 LGMADTHFEDCCGLTDSDNHYTTAYDIALMSRELITRFPQVYDYTTIWMDTITHVTRRGS 288
Query: 200 ----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
NTN + ++ G G+KTG T + F + A+A++ D LI+V++ D TR
Sbjct: 289 SEFGLANTNKLLRSYDGCMGLKTGSTSKALFCVSATAVRNDIELISVVMAGPDSKTRFAD 348
Query: 256 SASLLSMGFYNKTDRKKINYIIKD---FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
+A++L+ GF + + +EE + N + ++
Sbjct: 349 AAAMLNYGFGKCRLYIDDEPPELPHLSVKRGVEDTVSCHYAEEFRYLDAQGRNLDDIERK 408
Query: 313 AKDKESHFIDFEKITLLKNKIT 334
+ E K + +
Sbjct: 409 LELPEELSAPVSKESAAGRMVY 430
>gi|332977441|gb|EGK14217.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437]
Length = 395
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 97/337 (28%), Positives = 148/337 (43%), Gaps = 11/337 (3%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
IA S +A L+D +TG V+ E PAS+TK+MT +V
Sbjct: 16 IAAGPTSVWAAEDGLAP--SSKSAVLVDADTGTVLYEKNSREKLPPASITKIMTMLLVME 73
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L++ + + S+ AS S + G M L++ LK + V SAND +VA+AE L
Sbjct: 74 ALEKGQISYEDRVRTSEYASSMGGSQIFLETGEVMKLEDLLKAVAVGSANDASVALAEHL 133
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD----FPQ 183
TE++FV+ MN ++ LG+ T F N +G+ HY+TARD+AI+S +
Sbjct: 134 AGTEERFVEMMNRRAEELGMKDTRFQNPNGLPASDHYSTARDIAIMSRELLKHREITRFT 193
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ ++ K NTN V + G DG+KTGFT +GF + A+A + D IAV+
Sbjct: 194 KTYEDYLRKESKKPFWLVNTNKLVKFYEGLDGLKTGFTREAGFCLAATAKRRDLRAIAVV 253
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS----EEVCTT 299
+G D RN+ +L F +R Q E I ++
Sbjct: 254 MGEPDVKARNREITRMLDFAFNQYANRVIYKPGQLIGKLQVDKGEKSMIEVRSPQQFSVL 313
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
K+ N + + + E K LL +K
Sbjct: 314 MKKGENADDYRTKIRW-EKLKAPVRKGQLLGAVEVEK 349
>gi|296132902|ref|YP_003640149.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola sp. JR]
gi|296031480|gb|ADG82248.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermincola potens JR]
Length = 372
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 83/341 (24%), Positives = 136/341 (39%), Gaps = 20/341 (5%)
Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++F +I L L+ L+D NTG V+ PAS TK
Sbjct: 1 MKRFRAGIIFFTIFLLKANTCLAWQPAVSADAAVLMDANTGQVLYAKNAHKRRPPASTTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
++T + + +S A+ S+ G +TLD ++ ++KS ND
Sbjct: 61 ILTGILALD-----MGNPAETVVVSPRAAAVGESSIYLSAGEKLTLDELIQGALMKSGND 115
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
AIAE + + + F Q MN +K LG ++F+N HG+ HY+TA D+A+++
Sbjct: 116 ACAAIAEHIGGSIEMFSQLMNLKAKMLGAWNSNFINPHGLPAKNHYSTAYDLALIARY-A 174
Query: 179 TDFPQYMHYFQIKGLEIKGK------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
++ K EI NTN + ++ ADG+KTG T A+G +V+SA
Sbjct: 175 MQNRRFAEIVAQKEKEIDWYGQSWNRHLKNTNKLLWRYIWADGIKTGTTKAAGQCLVSSA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ + LIAV+L + D R S L GF N ++ Y + P +
Sbjct: 235 SKDCRKLIAVVLKSGD---RYGDSIQLFEYGFNNYYYQQVAVAGEYFGYADVKNGLYPKV 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKE---SHFIDFEKITLLK 330
+ ++ + K + L
Sbjct: 292 QLAFKSDLGVLVPKDRPGSLEKRLVLERKPQAPVKAGQTLG 332
>gi|169831388|ref|YP_001717370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
audaxviator MP104C]
gi|169638232|gb|ACA59738.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
audaxviator MP104C]
Length = 366
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 75/318 (23%), Positives = 124/318 (38%), Gaps = 6/318 (1%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ LL+ +G ++ E P AS+TK+MT + L KA L I
Sbjct: 14 KGPETEAESAVLLEPVSGQILYEKEPYKEQPIASVTKIMTMLLAVEALDSGKAKLDDIIV 73
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
S++A+ S M+ L + SAND +VAIAE + +E+ FVQ MN+
Sbjct: 74 TSEHAAGMGGSQIYLAPQEKMSFREMLISVATGSANDASVAIAEHVAGSEEAFVQMMNDR 133
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-PQYMHYFQIKGLEIKGKKY 200
+ LG TH++N G+ GHY+ A D A++ + + + L K
Sbjct: 134 AAELGAKHTHYVNPTGLPAEGHYSCAYDQAVILREALKYPLFREVSAIKEYDLRGGEFKL 193
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN + + GAD KTG+T + + + +S + + LIAV+LG + + S L
Sbjct: 194 WNTNKLLWWYPGADAGKTGWTNEAKYCLASSVKKDNLRLIAVVLGVPETKGHFRESIKLY 253
Query: 261 SMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
+ GF + + + EVC +
Sbjct: 254 NWGFARFEAVVLAGEGELIKTLPVDKGVDTTVDLIVPHEVCVVVPRGEK-EGVDFRVELP 312
Query: 317 ESHFIDFEKITLLKNKIT 334
++ L + +
Sbjct: 313 SWPAAPLKQDEALGSYVV 330
>gi|288554616|ref|YP_003426551.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus
OF4]
gi|288545776|gb|ADC49659.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus
OF4]
Length = 444
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 77/362 (21%), Positives = 142/362 (39%), Gaps = 36/362 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + MA L A L++ +G ++ + D AS+TK+M+ Y
Sbjct: 13 FMSFVLMATLIVQPTTADAALDLDAESAILVEAESGKILYQKNIDAVLPLASMTKMMSEY 72
Query: 64 VVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
++ + E + + IS + SN ++ T T+ + + + + SAN
Sbjct: 73 LILEAISEGRISWDQQVPISDWVRTLSLQTALSNVPLRQDETYTVRDLYESVAIYSANAS 132
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYT 165
+A+AE + +E +FVQ MN + LGL +F+N+ G+ +
Sbjct: 133 TIALAELISGSETQFVQLMNEKGEELGLEDFNFVNSSGLNNRDLQGNHPEGTGAEAENEM 192
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA------VGTFLGAD 214
+AR A L++ + D+P+ + I + + N NW + G D
Sbjct: 193 SARATAKLAYALLRDYPEVLETASIPMKDFQAGPGEVIPMENWNWMLPTIRPQHDYEGID 252
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G+KTGFT A+G +A + LI+V++ R+ R + LL GF N + + +
Sbjct: 253 GLKTGFTSAAGNTFTGTAERDGMRLISVVMRTESRDARFNETRKLLDFGFNNFSTVELFD 312
Query: 275 YI-------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +E + + N ++ D+E D E +
Sbjct: 313 EGHVVEGEETLPVAAGKEREVAISSAEALSAVVRNGQNDQYSVELGLDQEKLNEDGELVA 372
Query: 328 LL 329
L
Sbjct: 373 PL 374
>gi|326202106|ref|ZP_08191976.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens
DSM 2782]
gi|325987901|gb|EGD48727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens
DSM 2782]
Length = 408
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 78/316 (24%), Positives = 137/316 (43%), Gaps = 6/316 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L+D +G V++E AS+TK+MT ++ + + +++S+
Sbjct: 55 DLRAKSAVLMDAASGKVLSEKNSHERLAIASVTKVMTMLLIMEAIDSGRFTFDDKVSVSE 114
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
++ S + + G T+ + L + S+ND+AVA+AE + +E+ FV MNN ++
Sbjct: 115 YSAGMGGSQAYMEPGEEFTVTEMMNALAIHSSNDVAVALAEKVSGSEETFVTDMNNKAQA 174
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PN 202
LG+ T FM+ G+ G Y++A D+A++S + P+ + + + + N
Sbjct: 175 LGMKDTKFMDCTGLNDDG-YSSAHDVALMSRELVMKHPKVLQFTGKWHDTFRNGTFDLYN 233
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
TN V + DG+KTGFT +GFN+ A+ + + L++V+LG D NTR S LL
Sbjct: 234 TNKLVKFYANCDGLKTGFTSKAGFNLSATTRRNNLRLVSVVLGEPDSNTRFAESRKLLDY 293
Query: 263 GFYNKTDRKKINYIIKD---FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
GF N ++ V + + KE
Sbjct: 294 GFANYEVINLDKRGNVVGNIPVKKGNKLSVSAVYGSDTSIMVSKGQKGKVEKEVALVPGL 353
Query: 320 FIDFEKITLLKNKITK 335
E + I K
Sbjct: 354 SAPVEINQKVGEVIYK 369
>gi|85714340|ref|ZP_01045328.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
sp. Nb-311A]
gi|85698787|gb|EAQ36656.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
sp. Nb-311A]
Length = 499
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 104/316 (32%), Positives = 166/316 (52%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
I M + + + + + L++ +TG V+ PW PAS+TKLMTAYV +
Sbjct: 46 IWMVLAGLLIAGAPLRAAHATEAHLLIEADTGKVLEAENATFPWYPASITKLMTAYVTLT 105
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+K + L T +T+S A+ PS F+ G+ +T+DNALK+++VKSAND+AV +AE +
Sbjct: 106 AVKHGRITLDTLLTVSPTAAAQSPSKMGFRPGTRVTVDNALKMMLVKSANDMAVVLAEGV 165
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ F MN ++ LG++ T ++N +G+ G ++ARD+AIL+ D P+Y ++
Sbjct: 166 GGSIDGFSAEMNAAAQRLGMTQTSYVNPNGLPADGQISSARDIAILARAFIHDLPEYEYF 225
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
I + + N N +G F GADG KTGF CASG+N+VASA Q + LIAV+LGA
Sbjct: 226 VHIPSIRYGRRVTHNFNKLIGRFPGADGFKTGFICASGYNLVASATQNGKRLIAVVLGAS 285
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R +A +L GF N T + ++ PN+ +E+C ++ +
Sbjct: 286 SGTMRAVRAAQMLERGFANNTLSWLRPALGTVDRLAPIAAAPPNLRDEMCGPKRMHPASD 345
Query: 308 TQMKEAKDKESHFIDF 323
+ +
Sbjct: 346 EDNDVVANTSATSAAV 361
>gi|304321771|ref|YP_003855414.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis
HTCC2503]
gi|303300673|gb|ADM10272.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis
HTCC2503]
Length = 387
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 81/333 (24%), Positives = 131/333 (39%), Gaps = 4/333 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ L + ++ + + + T P ++D TG V+ E P PAS++KLMT
Sbjct: 10 RLLCLASVVVGLTHGTVSAQSVTTDAPTALIMDGETGDVLFEKNARTPIPPASMSKLMTV 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
V + + TP ++S+ A S G+ + L LK +I S ND A+
Sbjct: 70 AVALDMIATGELSADTPFSVSERAWRTGGSKMFVLVGTEIPLKELLKGIITVSGNDAAIV 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE++ ++ F MN + GL+ +HF N HG+ TA D+A L+ I +P
Sbjct: 130 VAENIAGSDAAFADIMNRKAARWGLTGSHFANPHGIPDPEQRMTALDIAKLARHIWDSYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
Y + F + + N N +G GADGMKTG T +GF +V SA + V
Sbjct: 190 DYRYLFSLPEMTWSDITQRNRNPLLGL-EGADGMKTGHTEEAGFGVVGSASRDGVRRYIV 248
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTT 299
+ G R + LL F + + + LS VP
Sbjct: 249 VAGLPTSEARASTARRLLDTAFNDYSTVTFFTDGDRVGEAEVFGGLSETVPLEVSTAIRM 308
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + + E+ L
Sbjct: 309 TRHVSAIRGASAKLLYESPVLAPVEEGDRLGVL 341
>gi|169832020|ref|YP_001718002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
audaxviator MP104C]
gi|169638864|gb|ACA60370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
audaxviator MP104C]
Length = 400
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 82/349 (23%), Positives = 148/349 (42%), Gaps = 23/349 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
FL++I + L + L+D +TG + E D PAS TK++TA
Sbjct: 8 FLILIPLCFLPAAGGAQAGEPEITGEAAVLMDLDTGRFLYEKNADRVMYPASTTKILTAL 67
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
V ++ + +T+S+NA S G +L+ L ++ SAND A A+
Sbjct: 68 VA---VRNGYDRMDDRVTMSENAVYAGGSAIWSAPGEEFSLEELLWSALLGSANDAATAV 124
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE LC + ++F MN ++ LG THF+N HG+ HYTTARD+A+++ +
Sbjct: 125 AEHLCGSVEEFSAAMNAEARRLGAWNTHFVNPHGLHDERHYTTARDLALIARAALNEPLI 184
Query: 184 YMHYFQIKGLEIKGKK-----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ NTN + + GA G+KTG+T +G +VA+A + ++
Sbjct: 185 REMAGTKTYQLSRADPDALSLLVNTNKLLWRYEGAIGLKTGYTSQAGQCLVAAAERNGRT 244
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEV---PN 291
++AV+L + N S +LL+ GF + + +
Sbjct: 245 VLAVVLKSEGNNI-WTDSIALLNYGFNRFRALVPVTEGDAICSVPVVFGDGEAVLRAGSG 303
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL-----KNKITK 335
++ V + + + ++ ++ + E++ L +I +
Sbjct: 304 LTHVVPVDEPAPVRWELRL--NRELVAPLRGGEQVGSLVVHCGGEEIGQ 350
>gi|71274450|ref|ZP_00650738.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Dixon]
gi|71900446|ref|ZP_00682578.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1]
gi|71164182|gb|EAO13896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Dixon]
gi|71729811|gb|EAO31910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1]
Length = 347
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 84/314 (26%), Positives = 151/314 (48%), Gaps = 11/314 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88
+D +G V+A PASLTK+MT+YV+ + +K K + +++NA
Sbjct: 1 MDFASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGAG 60
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S S F T L++ + +IV+S ND A+A+AE + +E+ F MN+ ++ +G+
Sbjct: 61 TDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAEHVAGSEEAFASLMNSYAQRIGMK 120
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+HF++A G+ GHY++A DMA+L + D P+ Y ++K L + G K N N +
Sbjct: 121 NSHFVDATGLSAEGHYSSAYDMALLGRALIRDSPETYAYNKVKELVVNGIKQSNRNLLLW 180
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF
Sbjct: 181 RDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFE 240
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTT------QKEIINYNTQMKEAKDKESHFID 322
+ +V + V + + ++ ++ E+
Sbjct: 241 THTLYEPGKVVIKHKIWKGQVSEVQLGVTRPLFVTVQRGRYNDLKPSIEVPRNLEAPIKP 300
Query: 323 FEKITLLKNKITKK 336
+ + +K + K
Sbjct: 301 GQSVGKVKVTLDGK 314
>gi|220929171|ref|YP_002506080.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulolyticum H10]
gi|219999499|gb|ACL76100.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulolyticum H10]
Length = 408
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 82/316 (25%), Positives = 137/316 (43%), Gaps = 6/316 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L+D +G V+ E AS+TK+MT +V + + +++S+
Sbjct: 55 DLRAKSAVLMDAASGKVLTEKNSHERLAIASVTKIMTMLLVMEAIDAGRFTFDEKVSVSE 114
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
++ S + + G T+ + L + S+ND+AVA+AE + +E+ FV MNN ++
Sbjct: 115 YSAGMGGSQAYMEPGEVFTVTEMMNALAIHSSNDVAVALAEKVSGSEETFVTDMNNKAQA 174
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PN 202
LG+ T FM+ G+ G Y+TA D+A++S + P+ + + + + N
Sbjct: 175 LGMKDTKFMDCTGLNDDG-YSTAHDVALMSRELVIKHPKVLQFTGKWHDTFRNGTFDLYN 233
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
TN V + DG+KTGFT +GFN+ A+ I+ + LI+V+LG D NTR S LL
Sbjct: 234 TNKLVKFYANCDGLKTGFTNKAGFNLSATTIRNNLRLISVVLGEPDSNTRFAESRKLLDY 293
Query: 263 GFYNKTDRKKINYIIKD---FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
GF N ++ V + + KE
Sbjct: 294 GFANYEVINLDKKGNVVGNIPVKKGNKLSVSAVYGTDTSIMVSKGQKGKVEKEVALVPGL 353
Query: 320 FIDFEKITLLKNKITK 335
E + I K
Sbjct: 354 SAPVEINQKVGEVIYK 369
>gi|114799690|ref|YP_760518.1| D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC
15444]
gi|114739864|gb|ABI77989.1| D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium ATCC
15444]
Length = 378
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 75/340 (22%), Positives = 139/340 (40%), Gaps = 12/340 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F ++ + LS + Y ++D TG ++ D P PAS+TK+MTA+
Sbjct: 2 FAALLTLGALSGA-SVSAQMIDTPAEYAVIMDHATGKILYSKRGDEPMTPASMTKMMTAF 60
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSAND 118
VVF + + LT T+S++A T T++ L +I S ND
Sbjct: 61 VVFELIDRGELSLTDKFTVSEDAWRRGGFPSGTSTMGLVPKDTPTVEELLHGVITMSGND 120
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+ +A+ + +E+ F + M + LGLS+ +F+N G+ GH +A D+A L+
Sbjct: 121 ACIVLAQGISGSEEAFSRRMTEMAHELGLSSVNFVNTTGLEGDGHVVSAEDLARLAKMTI 180
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+PQY ++ + + N N + GADG+KTG +SG+ + ASA++
Sbjct: 181 DKYPQYYEWYSLPSYTWREYTQANRNPLLEV-AGADGLKTGHLESSGYGLTASAVRDGVR 239
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISE 294
V+ G R + S L+ + F + + + + +++E
Sbjct: 240 RTIVVNGLPTMAARAQESERLMRVAFQSFDLKTIGPETLVLPDVEVWLGEARAVPVSLAE 299
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + ++ D +K + +
Sbjct: 300 PIEVAGHKAAFSKANVEIVLD-GPVKAPLKKGDQVGRLVI 338
>gi|299530593|ref|ZP_07044011.1| serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni
S44]
gi|298721416|gb|EFI62355.1| serine-type D-Ala-D-Ala carboxypeptidase [Comamonas testosteroni
S44]
Length = 390
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 94/329 (28%), Positives = 152/329 (46%), Gaps = 15/329 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ Y L+D G V+ D P ASLTKLM+AYVVF L+ KK L
Sbjct: 27 AAPVPPEIAARNYLLVDVTAGQVLGAKDVDAPVEQASLTKLMSAYVVFDALRSKKITLEQ 86
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S+ A + P S + +++ L +I++S ND +A+AE++ T + FV+ M
Sbjct: 87 RMPVSERAWKMPGSRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENFVKMM 146
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N+ +K LG+ T + N G+ + GH TTARD++IL+ R+ DFP+YMHY+ K G
Sbjct: 147 NDQAKALGMKNTSYKNPEGLTEPGHLTTARDLSILAQRLMHDFPEYMHYYATKQYSYPGT 206
Query: 199 KY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGALDRN 250
N N + DG+KTG T A+G+ +VA+A + + L++++LG
Sbjct: 207 PASNGSNRNALLFRDPTVDGLKTGHTNAAGYCLVATAKRDLPNVGQRRLLSIVLGTASEK 266
Query: 251 TRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEE----VCTTQKEI 303
R S LL+ G+ K + + +N V + V
Sbjct: 267 ARANESQKLLNWGYTAFDAVKLFDSDQPVATPAVWKGAANAVKIGKADGAVVVTVPSGTG 326
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLKNK 332
T++ + + + +LK K
Sbjct: 327 GKLTTEVVRQDPLIAPIAKGQSMGVLKVK 355
>gi|160880719|ref|YP_001559687.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
phytofermentans ISDg]
gi|160429385|gb|ABX42948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
phytofermentans ISDg]
Length = 450
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 82/330 (24%), Positives = 145/330 (43%), Gaps = 12/330 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
++ + L++ +TGH+I PAS+TK+MT ++F L + +
Sbjct: 86 AAEIAGDLSLTSEAVVLMEGSTGHIIYSKNEIKELRPASITKIMTLLLIFDALDSGQIKM 145
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T +++S++A+ S + T +D LK + + SAND +VA+AE + +E+ FV
Sbjct: 146 TDQVSVSEHAASMGGSQVFLEPFETQDVDTMLKCISIASANDASVAMAEFIAGSEEAFVS 205
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN +K LG+ T+F+N +G+ HYT A D+A++S + P+ +Y + +
Sbjct: 206 KMNQKAKELGMDHTNFVNCYGLDTDNHYTCALDVALMSRELIMKHPEISNYSTVWMDKFV 265
Query: 197 GKK--------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
NTN + ++ G G+KTG T + + + A+A + LIAV++ A D
Sbjct: 266 HTTKRGQTEFGLNNTNKLIKSYQGITGLKTGSTGLAKYCLSATARRDGMDLIAVVMAAPD 325
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN----EVPNISEEVCTTQKEII 304
TR +A LL+ GF N + ++ + + +
Sbjct: 326 TKTRFAEAAKLLNYGFANCSIYTDNGEGLEIPEVAVKKGIQETVGGKLDNKFSYLCMKGS 385
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
N KE K ES ++
Sbjct: 386 NPANITKEIKMSESLEAPVSITDVIGEITY 415
>gi|317048758|ref|YP_004116406.1| beta-lactamase [Pantoea sp. At-9b]
gi|316950375|gb|ADU69850.1| Beta-lactamase [Pantoea sp. At-9b]
Length = 389
Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats.
Identities = 95/351 (27%), Positives = 155/351 (44%), Gaps = 19/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
+++ L++ M+ PF + + L+D TG ++ PD N
Sbjct: 2 LKRRLLVTVSGMIVWASLAQADDGMPFPLTPPSIDAASWVLMDATTGQILTAGNPDEERN 61
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDN 106
PASLTKLMT YVV + + K +T+ K+A K G +T+ +
Sbjct: 62 PASLTKLMTGYVVDRAIDQHKISRDDVVTVGKDAWAAGNPVFKGSSLMFLKPGDKVTVRD 121
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I+ S ND VA+A+ + +++ FV MN+ + LGL+ THF HG+ G +TT
Sbjct: 122 LSRGVIIDSGNDACVALADYVAGSQQNFVTMMNSYVQKLGLTHTHFETVHGLDAPGQHTT 181
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASG 225
ARD+A+LS I + P + + K L G N N L DG+KTG T +G
Sbjct: 182 ARDLAVLSRAIISGEPDFYAMYSEKTLTWNGITQNNRNGLLWDNNLHVDGLKTGHTETAG 241
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFY 281
FNI+AS+I G LIAVI+G R + + LL G + + + K + +
Sbjct: 242 FNIIASSIVGQHRLIAVIMGGKSSKGREEQARKLLVWGQNSFDTVQLFHAGKKIGTENVW 301
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
N ++++ + N + K D++ + +
Sbjct: 302 YGNPHQVDVGTTQDIYLSLPRGEVQNVKAKYIIDRKDLEAPLKANEQIGEI 352
>gi|294788907|ref|ZP_06754147.1| serine-type D-Ala-D-Ala carboxypeptidase [Simonsiella muelleri ATCC
29453]
gi|294483009|gb|EFG30696.1| serine-type D-Ala-D-Ala carboxypeptidase [Simonsiella muelleri ATCC
29453]
Length = 411
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 88/323 (27%), Positives = 143/323 (44%), Gaps = 3/323 (0%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++ + A T Y + D + ++A D PASLTK+MTAY+VF L E
Sbjct: 46 SASAPIGVIDAPTIAATAYLVKDLQSNQILASKDIDKSIEPASLTKVMTAYIVFKNLNEG 105
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
K + +S+ A + S + +++ + +K LIV S ND A+ +AE L +E
Sbjct: 106 KLKPEQMLKVSEKAWKVEGSRMFLEMKKPVSVADLIKGLIVHSGNDAAITLAEGLSGSEA 165
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
KFV MN +K LG++ THF N G+ H TT +D+ LS I DFP Y + +K
Sbjct: 166 KFVDLMNAEAKRLGMNQTHFENTTGLPSPKHLTTVQDLMTLSDAIIHDFPDYYKIYSLKE 225
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
G K PN N + DGMKTG T ++G+N++AS+ + + ++++++G + R
Sbjct: 226 FTYNGIKQPNRNLLLFRDPSVDGMKTGHTSSAGYNLIASSKRNGRRVVSIVVGTASQEAR 285
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
S+ LL+ N K + P++ + +
Sbjct: 286 ATESSKLLNFALQNFDTPKMYQAGQSVARIKVFKGASPDVPIGFLNDTFMTLPHEHNKDI 345
Query: 313 AKDKE---SHFIDFEKITLLKNK 332
E +K T +
Sbjct: 346 TPLLETRQPVLAPIKKGTEMGTI 368
>gi|83590204|ref|YP_430213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
ATCC 39073]
gi|83573118|gb|ABC19670.1| Serine-type D-Ala-D-Ala carboxypeptidase [Moorella thermoacetica
ATCC 39073]
Length = 385
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 88/344 (25%), Positives = 155/344 (45%), Gaps = 21/344 (6%)
Query: 3 QFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+FL + LS I P + A + Y L+D TG V+ P A TK+
Sbjct: 8 RFLAAGVFLFIFLSFIKPGRAAAPDIQAESYVLMDFRTGQVLMAKNPHERRPQAITTKIT 67
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA + + L + SKNA+E P S+ ++G T+TL+ L L+++SAND A
Sbjct: 68 TAILALE-----RGNLNDQVIASKNAAETPESSIYLQEGETLTLEELLYALLLRSANDAA 122
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE + + + F + MN + +G TH++N HG+ HY++A D+A++ +
Sbjct: 123 VAIAEHIGGSVENFARMMNAKVQEIGARDTHYVNPHGLTAPDHYSSAYDLALIGRYAMMN 182
Query: 181 FPQYMHYFQ-IKGLEIKGKKYP----NTN---WAVGTFLGADGMKTGFTCASGFNIVASA 232
+ + GK +P N N W + GADG+K G+T +G +VASA
Sbjct: 183 PKFREIVATRQRIIPWAGKPWPRLLINENRLLWGYYAYPGADGVKNGYTTPAGQVLVASA 242
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEV 289
+ + LIAV++ + + + ++++L GF N K + + + ++ +
Sbjct: 243 TRDNWRLIAVVMKSPN---MYRETSAILDYGFNNFHQVKLMPAGQQVALAGVRGGIAANI 299
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
P ++ + + T + + +K + I
Sbjct: 300 PAVTADDVLVVEPKNETWTWQQRVELNPDLNAPVKKGDRIGRII 343
>gi|207727766|ref|YP_002256160.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase)
[Ralstonia solanacearum MolK2]
gi|206591007|emb|CAQ56619.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase)
[Ralstonia solanacearum MolK2]
Length = 398
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 87/327 (26%), Positives = 143/327 (43%), Gaps = 15/327 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + L D +G V+ D PASLTKLMTAY+ F +++ K
Sbjct: 33 QPVPAPQVTARAWMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQ 92
Query: 79 --PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T S + S + G +++ L+ LIV+S ND A+ +AE++ TE FV
Sbjct: 93 LITPTESVRTVKTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVM 152
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN ++ LG+ THFMNA G+ HYTTARD++IL+ + +FPQ ++ K
Sbjct: 153 LMNREAERLGMKNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYN 212
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDR 249
K PN N + DG KTG T ++G+ +V SA + + L++VI+G
Sbjct: 213 NIKQPNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSD 272
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEE--VCTTQKEI 303
R + S +L+ G+ + + D Y+ N + + + +
Sbjct: 273 QIRTQESLKVLNYGYQFFDTLRLYDAQQVLQTPDVYKGQAKNVKIGVMDAKWITVPKGMG 332
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLK 330
++ + + + +K
Sbjct: 333 GRLKPVLERRDPLIAPIAQGQPLGTVK 359
>gi|238021408|ref|ZP_04601834.1| hypothetical protein GCWU000324_01308 [Kingella oralis ATCC 51147]
gi|237868388|gb|EEP69394.1| hypothetical protein GCWU000324_01308 [Kingella oralis ATCC 51147]
Length = 418
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 81/321 (25%), Positives = 141/321 (43%), Gaps = 7/321 (2%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
Y + D + + D PASLTKLMTAY+ F L+E K
Sbjct: 56 AAEALKQPEIAATAYLVRDLQSNQTLVAKNTDQQIEPASLTKLMTAYLAFKALEEGKLQP 115
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+T+S+ A + S K S + + + ++ LIV S ND A+ +AE + +E+ F +
Sbjct: 116 EQKLTVSEKAWKVEGSRMFLKAHSEVPVWDLMRGLIVVSGNDAAITLAEGIAGSEEAFAK 175
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD-FPQYMHYFQIKGLEI 195
MN+ +K LG++ T+F NA G+ H T+ D+AILS I D +Y + K
Sbjct: 176 MMNDEAKRLGMTQTYFENATGLPAPKHLTSVNDLAILSNAIIRDLPAKYYEVYSYKSYTY 235
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
N N + DG+KTG T ++G+N++A++ + ++ ++++++GA R
Sbjct: 236 NNITQENRNLLLFRDDSVDGLKTGHTSSAGYNLIATSKRNNRRVLSIVIGAASAEARATE 295
Query: 256 SASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTTQKEIINYNTQ 309
S+ LL+ K Y+ S ++ V + T
Sbjct: 296 SSKLLNYALQGFDTPKMYQAGQVVGKVRVYKGASSEAEVGFQQDAYVTLPHGQGERVKTV 355
Query: 310 MKEAKDKESHFIDFEKITLLK 330
++ + + +K+ LK
Sbjct: 356 LETMQPVVAPVQAGQKLGTLK 376
>gi|220935870|ref|YP_002514769.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thioalkalivibrio sp.
HL-EbGR7]
gi|219997180|gb|ACL73782.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thioalkalivibrio sp.
HL-EbGR7]
Length = 391
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 96/334 (28%), Positives = 150/334 (44%), Gaps = 15/334 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L+ + + Y ++D +G V+AE D PASLTKLMTAY+VF ++
Sbjct: 22 LAQSTVRVPPPSDLESRNYLIMDHLSGMVLAERAADERVEPASLTKLMTAYLVFQEIERG 81
Query: 73 KAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L + IS+ A S + + + L + L+ LI++S ND +VA+AE +
Sbjct: 82 TISLDDEVRISERAWRTGMQGASRMFIEVNNRVRLQDLLRGLIIQSGNDASVALAEHVGG 141
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYF 188
TE FV MN ++ LG+ THF N+HG+ YT+ARDMA+L+ + DFPQ+ Y+
Sbjct: 142 TEGAFVDLMNAQARALGMVNTHFTNSHGLPTEEAQYTSARDMALLASALIRDFPQHYGYY 201
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG--A 246
+ G N N + DG+KTG+T SG+N+V+S Q L+AV++G A
Sbjct: 202 SERNFTFNGITQSNRNLLLWRDSQVDGLKTGWTRTSGYNLVSSREQEGMRLVAVVMGIDA 261
Query: 247 LDRNT----RNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCT 298
R S +L S GF + ++ +SE++
Sbjct: 262 PSHQQGGIKRANESQALYSWGFRQFETHRLYEAGAALTDARVWKGATDRVPMGLSEDLYV 321
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
T + Q + D S + +
Sbjct: 322 TVPRGRYRDMQAQMELDA-SLEAPVQAGEVYGEV 354
>gi|260881606|ref|ZP_05404816.2| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
20544]
gi|260848369|gb|EEX68376.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
20544]
Length = 399
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 77/341 (22%), Positives = 139/341 (40%), Gaps = 16/341 (4%)
Query: 5 LVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ + +++ S + A + L+D +TG V+ + PAS+TK+MT
Sbjct: 26 LLAVCLSLSSMTSVRAATAEPDIQAEAAILIDADTGRVLWSKNGEERHYPASMTKMMTCL 85
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ ITIS+ A+ +G +T + ++ +++ S N AVAI
Sbjct: 86 LGIQ-----LLPPDAKITISQAAASTEDLPLHIARGDVLTSEELMRGMMMVSDNGAAVAI 140
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-P 182
AE + + F + MN ++ LG+ THF N +G+ HY+T DMA L+ +
Sbjct: 141 AEHIDGSAAVFAERMNEKAQELGMVNTHFANPNGLTDPNHYSTPHDMARLAQYAMKNPVF 200
Query: 183 QYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + + + K NTN +G + G G+KTG+T A+G + ASA +
Sbjct: 201 RDFVRQKERRVTWIAPAGKTLLAENTNELLGHYEGITGIKTGWTSAAGGCLAASAERQGV 260
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK--KINYIIKDFYQQNLSNEVPNISE- 294
LIAV++ A + R ++L GF N T K + + + + +
Sbjct: 261 HLIAVLMKAPSEDARFPEMRAILDYGFANVTLAKGPTAKEASRHVWVKGGTQARTVVRPA 320
Query: 295 -EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
++ + + T + + I
Sbjct: 321 TDIEYPLLPGEEASHVKVNYDVPKVIDAPLTAGTKVGSAIL 361
>gi|323142851|ref|ZP_08077563.1| D-alanyl-D-alanine carboxypeptidase DacA [Succinatimonas hippei YIT
12066]
gi|322417393|gb|EFY08015.1| D-alanyl-D-alanine carboxypeptidase DacA [Succinatimonas hippei YIT
12066]
Length = 429
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 92/330 (27%), Positives = 146/330 (44%), Gaps = 8/330 (2%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
++ L T + L+D ++G V+ E+ PASLTK+MT+YV+ +K +
Sbjct: 56 ASAPLVLPSPPTFDAESWVLMDYHSGQVLFEHNGQKKIWPASLTKMMTSYVIGMEIKAGR 115
Query: 74 AMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ I++ A S + G T+++D+ K +I++S ND VA+A L +
Sbjct: 116 LKPDDQVMITEEAWSKNYSDSSKMFIEVGDTVSVDSLNKGIIIQSGNDACVAMAIHLAGS 175
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
E FV MN +K LGL+ THF N HG+ +Y+TA DMA+L + D P+ +
Sbjct: 176 EAGFVSVMNTYAKQLGLNHTHFSNVHGLFSEDNYSTAYDMALLGRALIRDLPEEYSIYAQ 235
Query: 191 KGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K G K N N L DG+KTG G+N+VASA G+ LIA ++GA
Sbjct: 236 KEFTFNGIKQSNRNRLLWDKTLNVDGIKTGHLSQVGYNLVASAPSGNMRLIASVIGAKSE 295
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
+ R +LS GF ++ + + ++E+V +
Sbjct: 296 SQRADFCRQMLSYGFRFFELYTPFKQGQSILKREVRLGDTDSVDLTVNEDVGMMIPRGSS 355
Query: 306 YNTQMKEAKDKESHFIDFEKITLLKNKITK 335
N ++ +K K L K
Sbjct: 356 SNIKISYRLNKAVFTAPIAKGDNLGIIEFK 385
>gi|330448017|ref|ZP_08311665.1| penicillin-binding 6 domain protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328492208|dbj|GAA06162.1| penicillin-binding 6 domain protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 459
Score = 191 bits (484), Expect = 1e-46, Method: Composition-based stats.
Identities = 85/318 (26%), Positives = 139/318 (43%), Gaps = 6/318 (1%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ + L+D NTG +IA N + PAS TKLM Y+V L + L + + +
Sbjct: 98 PPKLEARAFILMDANTGQIIASNDANMRMAPASTTKLMLMYIVEQKLADGVISLDSKVQV 157
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ A S K GS +++ ++ +IV+S ND AV +A + ++ FV MN T+
Sbjct: 158 PEVAWRTGGSRMFLKPGSYVSVKELIQGVIVESGNDAAVTLANYVAGSQSSFVSMMNATA 217
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
LG+ THF G+ H++TA D+ +L I D+PQY H+F K E + PN
Sbjct: 218 VKLGMHNTHFTTVMGLPAPAHFSTAYDLGLLGQHIMNDYPQYFHFFSQKYFEYNHIRQPN 277
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASA--IQGDQSLIAVILGALDRNTRNKVSASLL 260
N + T+ A GMKTG T A+G+++V+SA L+ V+LG N S +L
Sbjct: 278 FNRLLFTYQYATGMKTGSTEAAGYSLVSSAEIPNNPMKLVGVVLGTQSLNDVAAQSKALF 337
Query: 261 SMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
+ GF K + + + + + + ++ + + +
Sbjct: 338 NYGFRFFKQDTLYAADSKLSEQNVWGGKQNTVSLGLDKPLTLVLPSSVDEKDLITKLQID 397
Query: 317 ESHFIDFEKITLLKNKIT 334
K L
Sbjct: 398 RDIKAPVNKGDKLGEMTV 415
>gi|294083925|ref|YP_003550682.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292663497|gb|ADE38598.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 394
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 87/349 (24%), Positives = 150/349 (42%), Gaps = 14/349 (4%)
Query: 1 MRQFL------VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
+++ L V I+ + L+ S T + + D +TG V+ + D PA
Sbjct: 2 LKRLLQVTTMSVFISASWLTISNSAGSTEITTPAEFAYITDFDTGKVLFQKNADMQMKPA 61
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+ K+MT ++ F ++E L +S+ A S S + GS +T+ + L +IV+
Sbjct: 62 SMAKIMTIFIAFERIREGGLSLNDKFQVSEKAWRKGGSRSFLEVGSFVTVSDLLNGVIVQ 121
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI-- 172
S ND A+ IAE + TE+ F + MN ++ LG+ T F N+ G TTA+D+ I
Sbjct: 122 SGNDAAIVIAEGISGTEESFAEEMNFWAQKLGMENTVFRNSTGWPDPELTTTAKDLNILS 181
Query: 173 ---LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+S ++P F+ K E G PN N V +GADG+KTG T SG+ +V
Sbjct: 182 SALISRFPIDEYPDLYPMFKKKRFEYNGIDQPNRNPLVYGTVGADGLKTGHTKESGYGVV 241
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
SAI+ Q ++ V+ G R+ S L+ + F + ++
Sbjct: 242 GSAIREGQRVVMVLNGMTSMKQRSAESRRLMDLAFREFKQYRFFEANETVDVANVWLGKM 301
Query: 290 PNISEEVCTTQKEIINYNTQ---MKEAKDKESHFIDFEKITLLKNKITK 335
P++ + +++ + + + K L +
Sbjct: 302 PSVDLVLANPLHRVLSRDERRHLKMSVNWVDPVSAPITKGQKLGVLTIE 350
>gi|84685216|ref|ZP_01013115.1| D-alanyl-D-alanine carboxypeptidase family protein [Maritimibacter
alkaliphilus HTCC2654]
gi|84666948|gb|EAQ13419.1| D-alanyl-D-alanine carboxypeptidase family protein [Rhodobacterales
bacterium HTCC2654]
Length = 534
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 101/254 (39%), Positives = 148/254 (58%), Gaps = 1/254 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
++D +G V+ E D +PASLTK+MT Y+VF ++ + L + +TIS+NAS PPS
Sbjct: 19 VVDARSGQVLHERNADARLHPASLTKMMTLYIVFEAVEHGEISLDSLVTISRNASAEPPS 78
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
F++GS + L + ++ VKSAND A A+ E++ +E+ F MN T+K LG++ THF
Sbjct: 79 KIGFREGSQVRLRHLIRAAAVKSANDAATALGEAISGSEEAFAARMNRTAKALGMTRTHF 138
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFL 211
N HG+ GH +TARDM L + D+PQY + F ++ K P+TN T+
Sbjct: 139 ENMHGLTAEGHLSTARDMTTLGRHLFYDYPQYYNLFSRTSADVGVKTVPSTNRRFLTTYE 198
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
GADG+KTG+T ASG N+ ASA +G++ +IA I G +R+ A LL MGF +
Sbjct: 199 GADGIKTGYTRASGSNLTASAHRGNKRIIATIFGGTSGPSRDAQMAELLDMGFRQAGNNV 258
Query: 272 KINYIIKDFYQQNL 285
+ K Y N
Sbjct: 259 AVRPPSKPPYMGNS 272
>gi|126463103|ref|YP_001044217.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
ATCC 17029]
gi|126104767|gb|ABN77445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
ATCC 17029]
Length = 474
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 90/275 (32%), Positives = 146/275 (53%), Gaps = 6/275 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ + +AM+ ++ ++D TG + E + +PASLTK+MT Y+
Sbjct: 12 VLFVFVAMVMAAQSAVAAP-----YAAIVMDARTGETLYETNSETRLHPASLTKMMTLYI 66
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F ++ + L + +T++KNA+ PPS K G + L ++ VKSAND A AI
Sbjct: 67 TFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAIC 126
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E++ +E F + MN T+K +G++ T F N +G+ GH +TA DM +L R+ DFPQY
Sbjct: 127 EAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQY 186
Query: 185 MHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ F + + NTN + + GADG+KTG+T +G+N+ ASA +G++ +IA +
Sbjct: 187 YNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIATV 246
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
G RN A LL +GF + K+
Sbjct: 247 FGGKSTAHRNAKMADLLDLGFREAPENAKVRKPAP 281
>gi|77464261|ref|YP_353765.1| penicillin-binding protein [Rhodobacter sphaeroides 2.4.1]
gi|77388679|gb|ABA79864.1| Probable penicillin-binding protein [Rhodobacter sphaeroides 2.4.1]
Length = 501
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 90/275 (32%), Positives = 146/275 (53%), Gaps = 6/275 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ + +AM+ ++ ++D TG + E + +PASLTK+MT Y+
Sbjct: 39 VLFVFVAMVMAAQSAVAAP-----YAAIVMDARTGETLYETNSETRLHPASLTKMMTLYI 93
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F ++ + L + +T++KNA+ PPS K G + L ++ VKSAND A AI
Sbjct: 94 TFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAIC 153
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E++ +E F + MN T+K +G++ T F N +G+ GH +TA DM +L R+ DFPQY
Sbjct: 154 EAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQY 213
Query: 185 MHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ F + + NTN + + GADG+KTG+T +G+N+ ASA +G++ +IA +
Sbjct: 214 YNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIATV 273
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
G RN A LL +GF + K+
Sbjct: 274 FGGKSTAHRNAKMADLLDLGFREAPENAKVRKPAP 308
>gi|75676866|ref|YP_319287.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
winogradskyi Nb-255]
gi|74421736|gb|ABA05935.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
winogradskyi Nb-255]
Length = 455
Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats.
Identities = 104/322 (32%), Positives = 169/322 (52%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R++L + + + + L++ +TG V+ PW PAS+TKLMT
Sbjct: 9 RKWLPTCIVLAAVALVTLAPSRTVHATEAHLLIEADTGKVLEAENATFPWYPASVTKLMT 68
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
AYV + +K+K+ L T +T+S A+ PS F+ G+ +T+DNALK+++VKSAND+AV
Sbjct: 69 AYVTLTAVKQKRLTLDTLLTVSPTAAAQSPSKMGFRPGTQVTVDNALKMMMVKSANDMAV 128
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+AE + + F MN ++ LG++ + ++N +G+ G ++ARDMAIL+ D
Sbjct: 129 VLAEGVGGSIDGFSAEMNAAAQRLGMTQSSYVNPNGLPADGQISSARDMAILARAFIHDL 188
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P+Y ++ I + + N N +G F GADG KTGF CASG+N+VASA Q + LIA
Sbjct: 189 PEYEYFVHIPSIRYGRRVTHNFNKLIGRFPGADGFKTGFICASGYNLVASATQNGKRLIA 248
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301
V+LGA R +A +L GF N + + ++ PN+ +E+C ++
Sbjct: 249 VVLGASSGTMRAVRAAQMLERGFANNSLSWLRPALGTVDRLAPIAATPPNLRDEMCGPKR 308
Query: 302 EIINYNTQMKEAKDKESHFIDF 323
+ + +
Sbjct: 309 RHPASDEDNDVVANTSATSAAV 330
>gi|83855085|ref|ZP_00948615.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter
sp. NAS-14.1]
gi|83842928|gb|EAP82095.1| D-alanyl-D-alanine carboxypeptidase family protein [Sulfitobacter
sp. NAS-14.1]
Length = 473
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 93/312 (29%), Positives = 151/312 (48%), Gaps = 3/312 (0%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
++D TG V+ D +PASLTK+MT Y+ F +K + L + + I+ +
Sbjct: 2 AAPYAAYVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAIKRGEISLDSKVKITSH 61
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A+ PPS K G T+ L ++ VKSAND A AI E++ +E KF + MN T+K L
Sbjct: 62 AASEPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAIGEAIEGSEAKFARRMNRTAKAL 121
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
G++ T F NAHG+ + GH +TA DM I+ + D P+Y + F + +K +TN
Sbjct: 122 GMTNTTFKNAHGLTESGHMSTAHDMTIMGRHLLYDHPEYYNLFSRITADAGVRKVSHTNR 181
Query: 206 AV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
++ GADG+KTG+T A+GFN+ ASA +G++ +I + G + RN A L+ +GF
Sbjct: 182 RFLSSYKGADGIKTGYTRAAGFNLTASAERGNERIIVTVFGGTSTSARNAKVAELMDLGF 241
Query: 265 YNKTDRKKINYIIKDFY--QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
+ K Y ++ + +V + + +
Sbjct: 242 RRAPSSAPLKKPSKPAYADVEDTPVASDGAAGKVIRLVGAVTTSKRPTLRPGHQPQVVVA 301
Query: 323 FEKITLLKNKIT 334
++ + I
Sbjct: 302 TAEVPQATSPIL 313
>gi|241766088|ref|ZP_04764001.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax delafieldii
2AN]
gi|241363892|gb|EER59198.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidovorax delafieldii
2AN]
Length = 406
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 90/326 (27%), Positives = 146/326 (44%), Gaps = 11/326 (3%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
Y L+D ++A D P ASLTKLMT Y+VF L+ KK L
Sbjct: 43 AQAPQPPEIAARTYMLVDVTANQILAAKDIDAPVEQASLTKLMTGYLVFDALRAKKITLE 102
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ +S A + P S + +D+ LK +IV+S ND +A+AE + T + FV+
Sbjct: 103 QKLPVSVRAWKMPGSRMFIDPKMQVAVDDLLKGMIVQSGNDATMALAEGVGGTAENFVKL 162
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN+ ++ LG+ T + N G+ + GH TTARD+A L+ R+ DFP+YMHY+ K G
Sbjct: 163 MNDQAQALGMKNTAYKNPEGLTEPGHTTTARDLATLASRLMKDFPEYMHYYSTKQYSYPG 222
Query: 198 KKY---PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-----DQSLIAVILGALDR 249
N N + DG+KTG T A+G+ +VA++ + + L++++LGA
Sbjct: 223 TPASNGNNRNMLLFRDPTVDGLKTGHTAAAGYCLVATSKRDFPNVGQRRLLSIVLGAASE 282
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEIINY 306
N R S LL+ G+ K + + + + E +
Sbjct: 283 NARANESQKLLNWGYTAFDAVKLFDAGQPVATPAVWKGKESTIRIGRSEPIVVTVPAGSA 342
Query: 307 NTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++ + K + +
Sbjct: 343 GKVTSQIVRQDPLVAPYTKGQAIGSL 368
>gi|238751821|ref|ZP_04613308.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC
43380]
gi|238709950|gb|EEQ02181.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia rohdei ATCC
43380]
Length = 401
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 93/319 (29%), Positives = 147/319 (46%), Gaps = 11/319 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + Y L+D N+G V+ E D +PASLTK+M++YV+ +K K +T+ K
Sbjct: 37 SIEAKAYVLMDYNSGKVLTEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGK 96
Query: 85 NASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+A K G + L + K ++++S ND ++A+A+ + ++ FV M
Sbjct: 97 DAWATGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLM 156
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
NN +K LGL THFM HG+ G Y+TARDMA+L + D P+ + K
Sbjct: 157 NNYAKALGLDNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNKI 216
Query: 199 KYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ N N T + DGMKTGFT +G N+VASA G LI+V+LGA R S
Sbjct: 217 RQINRNRLLWSTNINVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESE 276
Query: 258 SLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
LL+ GF I + + + + ++++ T + N +
Sbjct: 277 KLLTWGFRFYETVVPIKAANPFVTQKVWFGDTGQVELGVAQDAAVTIPKGQMKNLKASYK 336
Query: 314 KDKESHFIDFEKITLLKNK 332
D+ K ++
Sbjct: 337 LDQTELRAPLAKHQVVGTI 355
>gi|330994628|ref|ZP_08318551.1| D-alanyl-D-alanine carboxypeptidase dacC [Gluconacetobacter sp.
SXCC-1]
gi|329758269|gb|EGG74790.1| D-alanyl-D-alanine carboxypeptidase dacC [Gluconacetobacter sp.
SXCC-1]
Length = 428
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 85/323 (26%), Positives = 136/323 (42%), Gaps = 4/323 (1%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
L + ++D TG V+ E D P+SLTK+MTAY+VF L+ +
Sbjct: 69 TPANSLIGPIDTLARWACIVDYTTGAVLLEKAADERMPPSSLTKMMTAYIVFGMLRAGRL 128
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L + +S+ A S T+ + + ++ ++++S ND + +AE + +E++F
Sbjct: 129 TLEQTLPVSEKAWRMQGSKMFVPLNGTVAVSDLIQGMVIQSGNDACIVLAEGIAGSEEQF 188
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MN + LG+S +HF+NA G GHY +ARD+A ++ + DFP Y H+F K
Sbjct: 189 VGLMNAKAAELGMSNSHFLNATGWPMDGHYMSARDVATIAMHLIHDFPDYYHFFSEKSFR 248
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N N V + ADG+KTG T A GF + ASA +G ++ I G N R +
Sbjct: 249 YNKISQENRNVLVVRGV-ADGLKTGHTDAGGFGLCASAERGGNRVVMAINGLPSSNARAQ 307
Query: 255 VSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
L F N + ++ + VP ++ T N
Sbjct: 308 EGERLFEWSFVNFENATLVHNGAVVDNVPVWLGQAATVPLVATRDITLTLPHGWQNRVHV 367
Query: 312 EAKDKESHFIDFEKITLLKNKIT 334
L +
Sbjct: 368 SVDYTSPVPAPVAAGQQLGEMVI 390
>gi|221640145|ref|YP_002526407.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
KD131]
gi|221160926|gb|ACM01906.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Rhodobacter
sphaeroides KD131]
Length = 463
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 90/275 (32%), Positives = 146/275 (53%), Gaps = 6/275 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ + +AM+ ++ ++D TG + E + +PASLTK+MT Y+
Sbjct: 1 MLFVFVAMVMAAHSAVAAP-----YAAIVMDARTGETLYETNSETRLHPASLTKMMTLYI 55
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F ++ + L + +T++KNA+ PPS K G + L ++ VKSAND A AI
Sbjct: 56 TFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAIC 115
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E++ +E F + MN T+K +G++ T F N +G+ GH +TA DM +L R+ DFPQY
Sbjct: 116 EAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQY 175
Query: 185 MHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ F + + NTN + + GADG+KTG+T +G+N+ ASA +G++ +IA +
Sbjct: 176 YNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIATV 235
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
G RN A LL +GF + K+
Sbjct: 236 FGGKSTAHRNAKMADLLDLGFREAPENAKVRKPAP 270
>gi|83952372|ref|ZP_00961103.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius
nubinhibens ISM]
gi|83836045|gb|EAP75343.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius
nubinhibens ISM]
Length = 491
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 95/258 (36%), Positives = 145/258 (56%), Gaps = 1/258 (0%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D +G V+ D +PASLTK+MT YVVF ++ + L ITIS++A+ PP
Sbjct: 17 MVIDARSGEVLHSRNADSRLHPASLTKMMTLYVVFEAVENGEISLDDTITISRHAASEPP 76
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S + G + L ++ VKSAND A A+ E++ +E +F + M T+K LG++ T
Sbjct: 77 SKLGLRAGQKIKLRYLIRAAAVKSANDAATALGEAIEGSEARFARRMTRTAKALGMTRTT 136
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTF 210
F NAHG+ + GH +TARDM L + DFP+Y + F + + NTN + +
Sbjct: 137 FKNAHGLTEDGHLSTARDMTTLGRHLFYDFPEYYNLFSRVETDAGVRSVSNTNRRLLSAY 196
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270
GADG+KTG+T A+GFN+VASA +G++ +IA + G ++RN A LL +GF R
Sbjct: 197 KGADGIKTGYTRAAGFNLVASAERGNERIIATVFGGRSSHSRNAEVAELLDLGFARAPRR 256
Query: 271 KKINYIIKDFYQQNLSNE 288
+N + Y +
Sbjct: 257 VAVNKPARPPYYGKIGGS 274
>gi|238791637|ref|ZP_04635275.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC
29909]
gi|238729253|gb|EEQ20769.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC
29909]
Length = 403
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 87/328 (26%), Positives = 138/328 (42%), Gaps = 11/328 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 32 VNLKTMIPGVPQIDSEAYVLIDYNSGKVLAEMNADARRNPASLTKMMTSYVIGQAIKAGK 91
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G + + + + ++S ND VA+A+ +
Sbjct: 92 IGPEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 151
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN K LGL T F HG+ G Y++ARDMA++ + D P
Sbjct: 152 AGSQDSFVNLMNNYVKALGLQNTQFKTVHGLDAEGQYSSARDMALIGQALIRDVPDEYAI 211
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA G LI+ +LG
Sbjct: 212 YKEKEFTFNNIRQMNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISAVLGG 271
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKE 302
R S LL+ GF + + + + + ++ T
Sbjct: 272 HTYKGRETESKKLLTWGFRFFETVAPLKVGKEFASEPVWFGDSDRVQLGVDKDAYLTIPR 331
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + K ++
Sbjct: 332 GRMKDLKASYVLNTPEIHAPLAKNQVVG 359
>gi|327394408|dbj|BAK11830.1| penicillin-binding protein 6B precursor DacD [Pantoea ananatis
AJ13355]
Length = 364
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 89/327 (27%), Positives = 140/327 (42%), Gaps = 11/327 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
PF + L+D TG V+ PD NPASLTKLMT YVV + +KK
Sbjct: 1 MPFPVTPPAIDAASWVLMDATTGQVLTAGNPDERRNPASLTKLMTGYVVDRAIDQKKITR 60
Query: 77 TTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+T+ K+A K G +++ + + +I+ S ND VA+A+ + +
Sbjct: 61 DDMVTVGKDAWAAGNPVFKGSSLMFLKPGDKLSVRDLSRGVIIDSGNDACVALADYVAGS 120
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+ FV+ MN+ + LGL+ THF HG+ G +++A DMA LS I P + ++
Sbjct: 121 QDNFVKLMNHYVEKLGLTNTHFETVHGLDAPGQFSSALDMAKLSRAIIDGEPDFYAMYRE 180
Query: 191 KGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K L G N N + DG+KTG T +GFNI+AS + G LIAV++G
Sbjct: 181 KTLTWNGITQNNRNGLLWDNSLHVDGLKTGHTETAGFNIIASNVVGQHRLIAVVMGGKSA 240
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIIN 305
R + + LL G + + K + N + +V +
Sbjct: 241 KGREEQARKLLVWGQNTFDTVQLFHAGKKIGSEHVWYGNPHQVEVGTANDVYLSLPRSEI 300
Query: 306 YNTQMKEAKDKESHFIDFEKITLLKNK 332
N + K ++ + +
Sbjct: 301 PNVKAKYVINRSDLEAPLKANENIGEI 327
>gi|297617565|ref|YP_003702724.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
lipocalidus DSM 12680]
gi|297145402|gb|ADI02159.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
lipocalidus DSM 12680]
Length = 427
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 79/340 (23%), Positives = 144/340 (42%), Gaps = 15/340 (4%)
Query: 5 LVIIAMAMLSNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+++I + + P L++A + P L++ TG ++ PD PASLTK++T
Sbjct: 30 VLLICLVLSLGFDPKLALASENPQVQAPSCVLMEATTGKIVWAKNPDQRMAPASLTKVLT 89
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A + + L I + N + +G TL+N L +++ S ND A+
Sbjct: 90 ALIALE-----RGDLNDKIKVGPNPPRVEGTRVYLVEGEEATLENLLYAMLLNSGNDAAL 144
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
AIAE +++ F + MN + LG +HF++ +G+ HYTT+RD+A+++ +
Sbjct: 145 AIAEHFGGSQQGFARLMNEKAAALGARNSHFVSPNGLSDPNHYTTSRDLAVIARAALQNP 204
Query: 182 PQYMHYFQIKGLEIKGKKYP---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
N N + + GADG+KTG+T + ++ASA + QS
Sbjct: 205 DFRKIVATKTRPWNGQDWQTTLINQNKLLWKYPGADGVKTGYTTEARNTLIASATRNGQS 264
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI--SEEV 296
IAV+L + + + +LL GF + + Q N+ ++ + ++
Sbjct: 265 FIAVVLDEPRGSVAEQDAIALLDYGFSHFQCLRLAKKNQLVSVLQVEKNKKIDLVAARDL 324
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
N + + F T + I K+
Sbjct: 325 TIVVSTGTKSNPVGELHLNSVHG--PFPSGTQVGEMIFKE 362
>gi|226309602|ref|YP_002769496.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis
NBRC 100599]
gi|226092550|dbj|BAH40992.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis
NBRC 100599]
Length = 438
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 81/355 (22%), Positives = 140/355 (39%), Gaps = 37/355 (10%)
Query: 16 IFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P S A + L++ +TG V+ PD PAS++K+MT Y+V +K+KK
Sbjct: 33 AAPVASQANLQLEAKSAILVEASTGKVLYSKDPDVALPPASMSKMMTEYLVHDAIKQKKM 92
Query: 75 MLTTPITISKNASEYPPSNS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ +S+ A + G + T+ + + + SAND V +AE + +
Sbjct: 93 KWDDVVPVSEYAFYIAKISDSSGVYLNLGESFTVKQLYEAMAIVSANDATVLLAEHIAGS 152
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQH------------GHYTTARDMAILSWRIK 178
E FV+ MN + LG+ T F+ + G+ + +ARD AIL+ +
Sbjct: 153 EAAFVELMNKKAAELGMKNTSFVTSTGLPADELGPYSVQTDQKENLMSARDSAILARALI 212
Query: 179 TDFPQYMHYFQIKGLEI-----KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIV 229
DFP + + N NW + + G DG+KTG T A+GF
Sbjct: 213 HDFPDALETSKKPIFTFRTGTPNEWTKKNYNWMLPSLISYYPGVDGLKTGHTDAAGFCFT 272
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
+A++ + LI+V++ A + R + L GF N K + K+ +
Sbjct: 273 GTAVRDNMRLISVVMKASTESKRFAETRKLFDYGFGNF---KLTKQMDKNVPVKGFETAP 329
Query: 290 PNISEEVCTTQKEIINYNTQMKE-AKDKESH-------FIDFEKITLLKNKITKK 336
EV N K + K + ++ ++ + K+
Sbjct: 330 VKNGVEVTVPVVTGSEVNMITKTGTEAKYTPTVTFQELTAPIQQGQVVGKIVLKE 384
>gi|126732363|ref|ZP_01748163.1| D-alanyl-D-alanine carboxypeptidase family protein [Sagittula
stellata E-37]
gi|126707232|gb|EBA06298.1| D-alanyl-D-alanine carboxypeptidase family protein [Sagittula
stellata E-37]
Length = 479
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 97/295 (32%), Positives = 151/295 (51%), Gaps = 1/295 (0%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
L +A ++D TG V+ D +PASLTK+MT Y+VF ++ + +
Sbjct: 1 MALLPMAVKAAPYAAMVMDARTGKVLHAQNADTRLHPASLTKMMTLYIVFEAVQNGELTM 60
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T +T+SKNA+ PPS ++G + L ++ VKSAND A AI E++ +E F +
Sbjct: 61 DTLVTVSKNAAAEPPSKLGLREGQKIKLRYLVRAAAVKSANDAATAIGEAVEGSEAAFAR 120
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN T+K +G++ T F NAHG+ GH +TARDM IL + D+P+Y + F +
Sbjct: 121 RMNRTAKAIGMTRTTFKNAHGLTAEGHLSTARDMTILGRHVIYDYPEYYNLFSRVTADAG 180
Query: 197 GKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ +TN + ++ GADG+KTG+T A+GFN+VASA +G + +IA + G +RN
Sbjct: 181 VRTVSHTNRRLLQSYKGADGIKTGYTRAAGFNLVASAERGRERVIATVFGGQSTASRNAK 240
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
A LL +GF R K Y + + + ++
Sbjct: 241 VAELLDLGFRESPTRVAFLAPGKPPYLGRGAGSGGIVVANTSDPAPGTRAKSIRV 295
>gi|332559150|ref|ZP_08413472.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
WS8N]
gi|332276862|gb|EGJ22177.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
WS8N]
Length = 463
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 90/275 (32%), Positives = 146/275 (53%), Gaps = 6/275 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ + +AM+ ++ ++D TG + E + +PASLTK+MT Y+
Sbjct: 1 MLFVFVAMVMAAQSAVAAP-----YAAIVMDARTGETLYETNSETRLHPASLTKMMTLYI 55
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F ++ + L + +T++KNA+ PPS K G + L ++ VKSAND A AI
Sbjct: 56 TFQAIQRGEISLDSLVTVTKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAIC 115
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E++ +E F + MN T+K +G++ T F N +G+ GH +TA DM +L R+ DFPQY
Sbjct: 116 EAVGGSEAAFAERMNRTAKAIGMTKTTFKNCNGLTAEGHLSTAHDMNVLGRRLFFDFPQY 175
Query: 185 MHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ F + + NTN + + GADG+KTG+T +G+N+ ASA +G++ +IA +
Sbjct: 176 YNIFSRRRADAGVTTVANTNTRFLDAYKGADGIKTGYTSPAGYNLTASAQRGNKRIIATV 235
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
G RN A LL +GF + K+
Sbjct: 236 FGGKSTAHRNAKMADLLDLGFREAPENAKVRKPAP 270
>gi|223928102|gb|ACN23817.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. enrichment
culture clone 7-14]
Length = 455
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 79/369 (21%), Positives = 141/369 (38%), Gaps = 37/369 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA----------ETNKLPYYTLLDTNTGHVIAENYPDHP 50
+++F M + + +A + L+D TG ++ +
Sbjct: 3 IKRFFAAFLMLLTVVSLSAVPVAADDAVTPVPDPNIQAKAAVLIDAETGTMLYGKNEHNE 62
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYPPSNSTFKKGSTMTLDNA 107
PASLTK+MTA + + + K L IT S N S++ K G TMT++N
Sbjct: 63 LYPASLTKIMTALLTLEAVDQGKLSLDQEITASASALNGLAADGSSAGIKVGETMTVENY 122
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
LK +++ SAN+ +AE++ + FV MN +K LG THF+N +G+ HYT+A
Sbjct: 123 LKCMLIVSANEACDVLAEAVSGSVSAFVDAMNAKAKELGCQNTHFVNPNGLHDSQHYTSA 182
Query: 168 RDMAILSWRIKTDFPQYMHYFQ------------IKGLEIKGKKYPNTNWAVGTFLGADG 215
D+ +++ + L N + A G
Sbjct: 183 WDLYLITAEALKYPEFMSICDMGVAEIPASNLSETRRLHTTNYLLSNWRANGYLYSDAHG 242
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGAL--------DRNTRNKVSASLLSMGFYNK 267
+KTG T +G +V+SA +G ++LI+V+LGA + L GF N
Sbjct: 243 IKTGSTSEAGHCLVSSATKGSRTLISVVLGAERIVGADGVADVQSFSETKRLFLWGFENF 302
Query: 268 TDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + ++ + + + + + V + ++ E+
Sbjct: 303 STKTVLSELDMLADVPVTLSKIDSVAVHPASAVDLILPNDVKPEELEQKLVLPENVKAPV 362
Query: 324 EKITLLKNK 332
L +
Sbjct: 363 TAGQELGSV 371
>gi|149203254|ref|ZP_01880224.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
TM1035]
gi|149143087|gb|EDM31126.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
TM1035]
Length = 465
Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats.
Identities = 98/315 (31%), Positives = 157/315 (49%), Gaps = 8/315 (2%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++ ++ ++D G V+ N D +PASLTK+MT YVVF ++
Sbjct: 2 LVIVPLSAVAAP-----YAALVMDARNGEVLYSNNADTRLHPASLTKMMTLYVVFEAIEN 56
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ L + ISK+A+ PPS + GS++ L ++ VKSAND A A+ E++ +E
Sbjct: 57 GEIGLDDKVVISKHAASEPPSKLGVRAGSSIALRYLIRAAAVKSANDAATALGEAIEGSE 116
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+F + MN T++ LG++ T F NAHG+ ++GH +TARDM IL + DFPQY + F
Sbjct: 117 AQFARRMNRTAEALGMTRTTFKNAHGLTENGHLSTARDMTILGRHLFYDFPQYYNLFSRI 176
Query: 192 GLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ +TN + + GADG+KTG+T A+GFN+ ASA + + +IA + G
Sbjct: 177 TTDAGVTSVSHTNRRLLEAYRGADGIKTGYTRAAGFNLTASAERNGERIIATVFGGQSTA 236
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS--EEVCTTQKEIINYNT 308
+RN A LL +GF + ++ + Y L I+ E+ + + + T
Sbjct: 237 SRNAKVAELLDLGFNKAPTQVAVHRPARPPYLGKLGTAPVMIAAGEDRPSVAAKTVRLTT 296
Query: 309 QMKEAKDKESHFIDF 323
K
Sbjct: 297 AAAVVKSLRPQSRPL 311
>gi|293396914|ref|ZP_06641188.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
4582]
gi|291420385|gb|EFE93640.1| D-alanyl-D-alanine carboxypeptidase DacA [Serratia odorifera DSM
4582]
Length = 356
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 89/310 (28%), Positives = 148/310 (47%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D N+G ++AE PD +PASLTK+M++YV+ +K K T +T+ K+A
Sbjct: 1 MDYNSGKILAEGNPDSRLDPASLTKIMSSYVIGQAIKAGKIKPTDLVTVGKDAWATGNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K G + + K ++++S ND ++A+A+ + +++ FV MN +K+LGL
Sbjct: 61 LRGSSLMFIKPGDRVPVMELNKGIVIQSGNDASIALADYVAGSQESFVSLMNGYAKHLGL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA- 206
THF+ HG+ G ++TARDMA+LS + D P + K + N N
Sbjct: 121 QNTHFLTVHGLDAEGQFSTARDMALLSQALIRDVPDEYALHKEKEFTFNKIRQVNRNRLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ L DG+KTG+T +G N+VASA G LI+V+LGA R S LL+ GF
Sbjct: 181 WSSNLSVDGIKTGYTSGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTWGFRF 240
Query: 267 KTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
I I + + ++ ++++ T + N + + +S
Sbjct: 241 YETTTPIKADKPFITQRVWFGDVGEVPLGVAKDASITIPKGQMKNLKASYKLNSDSLKAP 300
Query: 323 FEKITLLKNK 332
K ++
Sbjct: 301 LAKNQVVGTI 310
>gi|83746894|ref|ZP_00943941.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum UW551]
gi|207742170|ref|YP_002258562.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase)
[Ralstonia solanacearum IPO1609]
gi|83726479|gb|EAP73610.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum UW551]
gi|206593558|emb|CAQ60485.1| penicillin-binding protein (d-alanyl-d-alanine carboxypeptidase)
[Ralstonia solanacearum IPO1609]
Length = 398
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 87/327 (26%), Positives = 144/327 (44%), Gaps = 15/327 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + L D +G V+ D PASLTKLMTAY+ F +++ K
Sbjct: 33 QPVPAPQVTARAWMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQ 92
Query: 79 --PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T S + S + G +++ L+ LIV+S ND A+ +AE++ TE FV
Sbjct: 93 LITPTESVRTVKTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVM 152
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN ++ LG+ THFMNA G+ HYTTARD++IL+ + +FPQ ++ K
Sbjct: 153 LMNREAERLGMKNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYN 212
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDR 249
K PN N + DG KTG T ++G+ +V SA + + L++VI+G
Sbjct: 213 NIKQPNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSD 272
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEE--VCTTQKEI 303
R + S +L+ G+ + + D Y+ N + + + +
Sbjct: 273 QIRTQESLKVLNYGYQFFDTLRLYDAQQVLQTPDVYKGQAKNVKIGVMDAKWITVPKGMG 332
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + + + +K
Sbjct: 333 GHLKPVLERKDPLIAPIAQGQPLGTVK 359
>gi|90578192|ref|ZP_01234003.1| D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
gi|90441278|gb|EAS66458.1| D-alanyl-D-alanine carboxypeptidase [Vibrio angustum S14]
Length = 459
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 87/318 (27%), Positives = 140/318 (44%), Gaps = 6/318 (1%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ + L+D NTG +IA N + PAS TKLM Y+V L + L + + +
Sbjct: 98 PPSLNARAFILIDANTGQIIASNNANMRMAPASTTKLMLMYIVEQKLADGVISLDSKVLV 157
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ A S K GS +++ + ++ +IV+S ND AV +A + ++ FV MN T+
Sbjct: 158 PEVAWRTGGSRMFLKPGSYVSVKDLIQGVIVESGNDAAVTLANYVAGSQSSFVSMMNATA 217
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
LG+ THF G+ H++TA D+ +L I D+PQY H+F K E + PN
Sbjct: 218 VKLGMHNTHFTTVMGLPAPAHFSTAYDLGLLGEHIMNDYPQYFHFFSQKYFEYNHIRQPN 277
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQ--GDQSLIAVILGALDRNTRNKVSASLL 260
N + T+ A GMKTG T A+G+++V+SA +L+AV+LG N S L
Sbjct: 278 FNRLLFTYQYATGMKTGSTEAAGYSLVSSAKMPDNPMNLVAVVLGTQSLNDVAAQSKGLF 337
Query: 261 SMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
+ GF K + N + + + ++ + +
Sbjct: 338 NYGFRFFKQDTLYKADSKLSEQHVWGGQQDNVSLGLEKPLTLVLPSSVDEKDLLTNLQFD 397
Query: 317 ESHFIDFEKITLLKNKIT 334
+K L
Sbjct: 398 HDIKAPVDKGEKLGEMTV 415
>gi|58038510|ref|YP_190474.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H]
gi|58000924|gb|AAW59818.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H]
Length = 424
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 82/325 (25%), Positives = 136/325 (41%), Gaps = 4/325 (1%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + ++D +TG V+ + D P+SLTK+MTAY+VF L
Sbjct: 64 VGTPANTPIGPFDTVARWAYVVDYDTGAVLLDKASDERMAPSSLTKMMTAYIVFGMLATG 123
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ L + +S+ A S G ++ + + ++ ++++S ND + +AE + +E+
Sbjct: 124 RIRLEQSLPVSEKAWRTQGSKMFVPLGQSVLVSDLIQGMLIQSGNDACIVLAEGIAGSEE 183
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+FV MN + LG+ +HF+N G+ GHY TARD+A ++ + DFPQY HYF
Sbjct: 184 RFVAMMNEEAPKLGMMNSHFVNVTGLPADGHYMTARDVATVASHLIRDFPQYYHYFGELE 243
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ N N V L ADG+KTG T A GF + AS+ + +I VI G+ N R
Sbjct: 244 FTYNHIRQGNRNVLVDKGL-ADGLKTGHTEAGGFGLCASSQRNGNRVIVVINGSSSSNER 302
Query: 253 NKVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
L+S F N + +V ++ +
Sbjct: 303 AHEGERLMSWAFANFENATLFRRGQVVDSAPVWMGEHRQVSLVAGADIVMTLPVGWQQRS 362
Query: 310 MKEAKDKESHFIDFEKITLLKNKIT 334
K + +
Sbjct: 363 HIGVDYASPVIAPVTKGQVCGALVI 387
>gi|86136162|ref|ZP_01054741.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. MED193]
gi|85827036|gb|EAQ47232.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. MED193]
Length = 391
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 81/344 (23%), Positives = 139/344 (40%), Gaps = 16/344 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ +I + P A + +LD T V+ + P PAS++KLMT
Sbjct: 7 KLALIGGFGLCLTALPL--AAYDTRARAAFVLDQGTDTVLLSKNAEVPLPPASMSKLMTL 64
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
YV F L++ + L + +S +A Y S + +++ L+ +IV S ND
Sbjct: 65 YVAFEALRDGRLSLDERLPVSAHAMSYGGSTMFLDTTDRVRVEDLLRGIIVLSGNDACAV 124
Query: 123 IAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
IAE+L E F ++M + LG+ F N++G GH + RD+ +L+ + D
Sbjct: 125 IAEALSPDGTEAGFARYMTKRAHELGMMNASFANSNGWPAIGHRMSMRDLGVLAEHLIED 184
Query: 181 FPQYMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
FPQY F K N N +G +GADG+KTG T +G+ +V SA+QGD+
Sbjct: 185 FPQYYPLFSEKSFAFDGRAPSNTRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAVQGDR 244
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE------VPN 291
+I V+ G R + + ++++ F + + + +P
Sbjct: 245 RVIFVVTGLESNKARAEEAEAIVNWSFRQFAKKTVAKAGVSVASAEIWRGAERSVGLMPE 304
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E+ ++ K L + +
Sbjct: 305 TDLEILLPALAGSEIEAEVVY---SGPIDAPVTKGQRLAELVVQ 345
>gi|254487632|ref|ZP_05100837.1| D-alanyl-D-alanine carboxypeptidase protein [Roseobacter sp.
GAI101]
gi|214044501|gb|EEB85139.1| D-alanyl-D-alanine carboxypeptidase protein [Roseobacter sp.
GAI101]
Length = 470
Score = 190 bits (482), Expect = 2e-46, Method: Composition-based stats.
Identities = 96/318 (30%), Positives = 158/318 (49%), Gaps = 9/318 (2%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P ++A ++D +G V+ + +PASLTK+MT Y+ F +K +
Sbjct: 2 VLPLSALAAP---YAAYVIDARSGEVLHSRNAETRLHPASLTKMMTLYIAFEAIKRGEIS 58
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L + + IS +A+ PPS K G T+ L ++ VKSAND A AI E++ +E KF
Sbjct: 59 LDSQVKISSHAASEPPSKLGLKSGQTIALRYLIRAAAVKSANDAATAIGEAIEGSEAKFA 118
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
+ MN T+K LG++ T F NAHG+ + GH +TARDM ++ + DFP+Y + F +
Sbjct: 119 RRMNRTAKALGMTKTTFKNAHGLTEAGHMSTARDMTMMGRHLLYDFPEYYNLFSRITADA 178
Query: 196 KGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+K +TN ++ GADG+KTG+T A+GFN+VASA +G++ +I + G + RN
Sbjct: 179 GVRKVSHTNRRFLSSYKGADGIKTGYTRAAGFNLVASAERGNERVIVTVFGGTSTSARNA 238
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV-----PNISEEVCTTQKEIINYNTQ 309
A L+ +GF + + K Y V + + +
Sbjct: 239 KVAELMDLGFRRAPSKAPLQKPAKPVYADVEDVVVASGTTAGAAGKTIRLIGAVTTSKRP 298
Query: 310 MKEAKDKESHFIDFEKIT 327
+ + + ++T
Sbjct: 299 VLRPVSEAPVVVTVAQVT 316
>gi|297170270|gb|ADI21307.1| D-alanyl-D-alanine carboxypeptidase [uncultured gamma
proteobacterium HF0010_09F21]
Length = 381
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 89/351 (25%), Positives = 160/351 (45%), Gaps = 17/351 (4%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M+QF +++ ++ + + Y L + T VIA + ASLTKL
Sbjct: 1 MKQFSFLLLISLSINLFSSPIPKPPDLGVGSYILYEPTTDTVIASFNENESVEVASLTKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT+YVV +K+ + TIS A + P S ++G+ + + + +K +++ S ND
Sbjct: 61 MTSYVVADQIKQGYISMEDEPTISVKAWQTPGSQMFIREGTKVKVSDLVKGMVIISGNDA 120
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+VA+AE + +E+ FV M+ + +LGL + F N+ G+ + ++A D+A L+ I
Sbjct: 121 SVALAEHIAGSEENFVYLMDQYAVDLGLRNSDFNNSSGLPDPNNVSSALDLAKLTGAIIR 180
Query: 180 DFPQYMHYFQIKGLEIKGK-----KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
DFP + ++ K PN N + DG+KTG+T A+G +V S+ +
Sbjct: 181 DFPDHYQIYKEKEFSYSAPGEYVAPQPNRNRLLHLDDMFDGVKTGYTRAAGHCLVGSSTR 240
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVP 290
D LIAV+LG+ + R +L+ G+ R+ ++ + N +
Sbjct: 241 DDMRLIAVVLGS-GIDKRFADVRALVGYGYQYFKTREIVSSGDEIDSLSVIAGNQDSVSV 299
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFI------DFEKITLLKNKITK 335
+ + V T K+ I+ Q+ + + I + I N I +
Sbjct: 300 GVDKSVVMTLKKNIDLELQILAQERIVAPVIRGTTAGTLKIIDEDGNIINE 350
>gi|254518746|ref|ZP_05130802.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
7_2_43FAA]
gi|226912495|gb|EEH97696.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
7_2_43FAA]
Length = 401
Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats.
Identities = 85/361 (23%), Positives = 152/361 (42%), Gaps = 32/361 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET----------------------NKLPYYTLLDTNT 38
M + + I+ + ++ P + E L++ +
Sbjct: 1 MNKVVAIVLSLLSISVVPVKADVEPYDTSIETYEEWTTEVFSDEGINVDAKSALLIEPKS 60
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98
G ++ E D + PAS+TK+MT + + K L +T S+NA + S
Sbjct: 61 GKILYEKNIDEKFAPASVTKIMTMLLTMEAVDSGKITLQDKVTCSENAKKMGGSTMLLDT 120
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
G T++ +K + + S ND AVA+AE L TE FV+ MN ++ LG+ T F N +G+
Sbjct: 121 GEIRTVEELIKGVAIASGNDAAVALAEYLGGTEDAFVEMMNKRAQELGMVNTTFKNCNGL 180
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYM----HYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214
GH +TARD++I+S + + I + N N V F G D
Sbjct: 181 PIEGHLSTARDISIMSLELLKHPTILKYSGIYMETISEGRKSPIELVNHNKLVRFFEGCD 240
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G+KTG+T + + I A+A + +++VI+GA RN+ + LL+ GF +K ++
Sbjct: 241 GLKTGYTEEAKYCISATATRNGVRMLSVIMGAPTYKVRNRDAGMLLNYGFSKFEGKKLLS 300
Query: 275 YIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+Q V E++ + N + + D ++++ ++
Sbjct: 301 KDEDVENIYLSKQTDKFLVARAKEDLVAIVPKGTNEELEKRIVID--EVKKEYKQGDIVG 358
Query: 331 N 331
Sbjct: 359 K 359
>gi|304316607|ref|YP_003851752.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778109|gb|ADL68668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 418
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 82/348 (23%), Positives = 147/348 (42%), Gaps = 22/348 (6%)
Query: 1 MRQ-FLVIIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ F I+A +L + P + P L+D TG V+ + PAS
Sbjct: 1 MKKTFTFIMAFIILISFIPHVYAIESPPQIVGPTAVLMDFTTGQVLYDKNMHQKMYPAST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK++TA + K L +T++ + ++ G +TL+ L ++++SA
Sbjct: 61 TKILTAIIAIEKGK-----LNDVVTVNDDVKNIDGNSIYLVPGEKLTLEQLLYAMLLESA 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A+A+A+ + + + F MN +K +G + +HF+N +G+ + HY+T DMA+++
Sbjct: 116 NDAAIAVADHIGGSVQAFADMMNKKAKEIGANDSHFVNPNGLPDNNHYSTPYDMALIARY 175
Query: 177 IKTDFPQYMHYFQI--------KGLEIKGKKYPNT--NWAVGTFLGADGMKTGFTCASGF 226
+ I K + + N + + GADG+KTG+T A+
Sbjct: 176 AMGNATFRKIVSTIHYQILPTNKFDKPRDLWISNRLIKPSSFHYDGADGVKTGYTIAANQ 235
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY--QQN 284
V SA + LI+VI+G N + +LL GF N T + Y
Sbjct: 236 VFVGSATRNGHRLISVIMGDEGTNI-WSDTINLLDYGFNNYTLVNPLEKDSIVTYADVGE 294
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++P I+++ N + +K T+L
Sbjct: 295 VKFKLPLIAKDSFYYAVPKGEENNIKSSITLDNNIKAPIKKGTVLGKI 342
>gi|218133227|ref|ZP_03462031.1| hypothetical protein BACPEC_01091 [Bacteroides pectinophilus ATCC
43243]
gi|217992100|gb|EEC58104.1| hypothetical protein BACPEC_01091 [Bacteroides pectinophilus ATCC
43243]
Length = 400
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 90/355 (25%), Positives = 157/355 (44%), Gaps = 21/355 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFL----------SIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
R+ I+ +++ + + + P L++ +TG + E D
Sbjct: 10 RRIAGILLTVIVAVLAAVPVQSMCMYRVNAAEPDVESPSVILMEASTGKTVYEKNADETL 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
+PAS+TK+MT ++F L E K L +T+S++A+ S + G T++ +K +
Sbjct: 70 HPASITKIMTLILIFDALSENKITLEENVTVSEHAASMGGSQVFLEAGEKQTVNTMIKCI 129
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
V SAND +VA+AE + +E+ FV MN ++ LG+S THF+N G+ GH TARD+A
Sbjct: 130 SVASANDASVAMAEHIWGSEQTFVDKMNERAQGLGMSGTHFVNCCGLDTDGHMMTARDVA 189
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADGMKTGFTCA 223
I+S + T +PQ Y I I NTN + + A G+KTG T
Sbjct: 190 IMSRELITRYPQIHEYSGIWMDTITHNTRRGESEFGLSNTNKLIKQYEWATGLKTGSTGL 249
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF---YNKTDRKKINYIIKDF 280
+ + A+A + LIAV++ A + TR K + SLL+ G+ D ++
Sbjct: 250 AKCCLSATAEKDGIELIAVVMAAPNSKTRFKDAISLLNYGYGVVDIYRDNAWLSQEKMVV 309
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + E E + + + + ++ + +
Sbjct: 310 HGGKSDSVKCRKNNEFVYVFTEDTDTGRIKCTEEYADGLEAPVYEGDVVGQMVYE 364
>gi|99082376|ref|YP_614530.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
gi|99038656|gb|ABF65268.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruegeria sp. TM1040]
Length = 496
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 98/255 (38%), Positives = 140/255 (54%), Gaps = 1/255 (0%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D TG V+ D +PASLTK+MT Y+ F ++ + L T IT+S+NA PP
Sbjct: 1 MVMDARTGEVLHSRNADTRLHPASLTKMMTLYIAFEAVRNGEITLDTQITVSRNAEAEPP 60
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S ++G + L ++ VKSAND A AI E++ +E F + MN T+K LG++ T
Sbjct: 61 SELGLRRGQKIALRYLIRAAAVKSANDAATAIGEAISGSEAAFARRMNRTAKALGMTRTT 120
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTF 210
F NAHG+ +GH +TARDM IL + D+P+Y + F K NTN +
Sbjct: 121 FKNAHGLTANGHMSTARDMTILGRHMLYDYPEYYNLFSRTSTNAGTKVVYNTNRRFLAAY 180
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270
GADG+KTG+T A+GFN+V+SA +GD+ +IA + G RN A LL +GF
Sbjct: 181 RGADGIKTGYTRAAGFNLVSSAKRGDERIIATVFGGKSTAARNAKIAELLDLGFRRAPAY 240
Query: 271 KKINYIIKDFYQQNL 285
K+ Y N
Sbjct: 241 AKLQKPPMPPYLGNS 255
>gi|238794862|ref|ZP_04638462.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC
29909]
gi|238725805|gb|EEQ17359.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia intermedia ATCC
29909]
Length = 401
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 96/315 (30%), Positives = 146/315 (46%), Gaps = 11/315 (3%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
Y L+D N+G V+ E D +PASLTK+M++YV+ +K K +T+ K+A
Sbjct: 41 KAYVLMDYNSGKVLVEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWA 100
Query: 89 YPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
K G + L + K ++++S ND ++A+A+ + ++ FV MNN +
Sbjct: 101 TGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYA 160
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K + N
Sbjct: 161 KALGLSNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQIN 220
Query: 203 TNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N T L DGMKTGFT +G N+VASA +G LI+V+LGA R S LLS
Sbjct: 221 RNRLLWNTNLNVDGMKTGFTSGAGHNLVASATEGPMRLISVVLGAPSDRVRFSESEKLLS 280
Query: 262 MGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
GF I + + + ++E+ T + + + D+
Sbjct: 281 WGFRFYETVVPIKATNPFVTQKVWFGDTGKAELGVAEDAAITIPKGKMKDLKASYKLDQA 340
Query: 318 SHFIDFEKITLLKNK 332
K ++
Sbjct: 341 ELRAPLAKHQVVGTI 355
>gi|71898423|ref|ZP_00680595.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1]
gi|71731736|gb|EAO33795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xylella fastidiosa Ann-1]
Length = 347
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 84/314 (26%), Positives = 152/314 (48%), Gaps = 11/314 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----- 88
+D +G V+A PASLTK+MT+YV+ + +K K + +++NA
Sbjct: 1 MDYASGQVLAGENIHTHLAPASLTKVMTSYVIAAEIKNGKVHRDDQVMMTENAWRKGGAG 60
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S S F T L++ + +IV+S ND A+A+A+ + +E+ F MN+ ++ +G+
Sbjct: 61 TDGSYSGFPVNKTARLEDMEQGMIVQSGNDAAIALAQHVAGSEEAFASLMNSYAQRIGMK 120
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+HF++A G+ GHY++A DMA+L + DFP+ Y ++K L + G K N N +
Sbjct: 121 NSHFVDATGLSAEGHYSSAYDMALLGRALIRDFPETYAYNKVKELVVNGIKQSNRNLLLW 180
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
DG+KTG T +G+ I+ SA +GDQ ++ V++G + R + S +LL+ GF
Sbjct: 181 RDPSVDGIKTGHTSEAGYCIINSAKRGDQRILTVVMGDVSEKKRAEDSLALLNWGFRFFE 240
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTT------QKEIINYNTQMKEAKDKESHFID 322
+ +V + V + + ++ ++ E+
Sbjct: 241 THTLYEPGKVVIKHKIWKGQVSEVQLGVPRPLFVTVQRGRYNDLKPSIEVPRNLEAPIKP 300
Query: 323 FEKITLLKNKITKK 336
+ + +K + K
Sbjct: 301 GQLVGKVKVTLDGK 314
>gi|269104718|ref|ZP_06157414.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161358|gb|EEZ39855.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 414
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 87/338 (25%), Positives = 145/338 (42%), Gaps = 14/338 (4%)
Query: 6 VIIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+I A ++ F +L + L+ NTG +IA + P PASLTK+MT
Sbjct: 12 LIFASCLVIPSFYSHSAYLLDPPDIDAKAWVLMSYNTGQIIAGDNLHKPLAPASLTKIMT 71
Query: 62 AYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+VV +K L+ +TIS+NA S G ++++++ L+ +IV S ND
Sbjct: 72 TFVVGEEIKAGNIQLSDMVTISENAWGKKFPGSSKMFLNVGDSVSVEDLLRGVIVSSGND 131
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
VA+AE + + F++ MN ++ G+ ++F N HG+ T+A DMA+L+
Sbjct: 132 ATVALAEHVAGHQSAFIKMMNQYAERYGMKDSYFSNPHGLDADDQTTSAYDMALLTRAFI 191
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ P + K K N N L DG+KTG+T +G+++V+SA G+Q
Sbjct: 192 QEVPDIYDMHKEKSFTFGDIKQGNRNALLWDETLHVDGVKTGYTKQAGYSLVSSAKNGEQ 251
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE-- 295
LIAV+LG R S LLS GF D + E +
Sbjct: 252 RLIAVVLGTKSAKARRLESKQLLSWGFRFYEDITPQLDDKLLEPIRIWHGEPASAELTLG 311
Query: 296 ----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + ++ +++ +
Sbjct: 312 DAGMITVPSRLKNKLKPIITYRENLAPPLEKGQQVGKI 349
>gi|84686497|ref|ZP_01014390.1| D-alanyl-D-alanine carboxypeptidase [Maritimibacter alkaliphilus
HTCC2654]
gi|84665410|gb|EAQ11887.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacterales bacterium
HTCC2654]
Length = 401
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 85/337 (25%), Positives = 140/337 (41%), Gaps = 8/337 (2%)
Query: 1 MRQ--FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
MR+ + +L+ + + A ++D T V+ E P PAS++K
Sbjct: 1 MRRCHVTARLLTTLLAGVIALPAFAFETSARSAYVVDLTTNTVLLEKNAQVPLPPASMSK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMT ++F L++ + L T +S+ A + S T++ +K +IV S ND
Sbjct: 61 LMTLNMLFEALEDGRVSLDTQFNVSQRAMDMGGSTMFLTTQDRPTVEELIKGIIVLSGND 120
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
V +AE L TE F M ++ LG+ + F NA G + D+AIL+ R+
Sbjct: 121 ACVVVAEGLGGTEDAFASMMTQRARALGMENSTFGNASGWPHPAQRMSTEDLAILAERLI 180
Query: 179 TDFPQYMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+FPQY HYF I+ N N LGADG+KTG T +G+ +V SA+QG
Sbjct: 181 EEFPQYYHYFGIEEFPYDGRAPDNRFNRNPLFDLGLGADGLKTGHTQEAGYGLVGSAMQG 240
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNI 292
++ ++ V+ G R SA++++ F R + + + V
Sbjct: 241 NRRVVLVVSGLDSEAARRSESAAIINFAFRQFVMRTAVESGQVIAEIPVWLGEAQTVALA 300
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ E + + E K +
Sbjct: 301 APEDVELLIPVTAHEGIKGEVTWSGPVEAPISKGDEI 337
>gi|83593448|ref|YP_427200.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum
ATCC 11170]
gi|83576362|gb|ABC22913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodospirillum rubrum
ATCC 11170]
Length = 468
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 92/263 (34%), Positives = 140/263 (53%), Gaps = 4/263 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ L ++A+ L P + A ++D +TG V+ D PASLTK+MT
Sbjct: 26 RILAMLAVVFLLLGLPTQAFA----GYASIVVDASTGRVLQARNADMRNYPASLTKMMTL 81
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F + K L + + +SK A+ PS G+ + +++A+K L+ KSAND+AV
Sbjct: 82 YLLFEAIDNGKYTLESRLPVSKWAANQAPSKLGVAAGTGIKVEHAIKALVTKSANDVAVV 141
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
IAE+L TE F M + LG+S T F NA G+ +G TTARDMA+LS + FP
Sbjct: 142 IAEALGGTEANFSALMTRKAAALGMSQTTFRNASGLPNNGQMTTARDMAVLSMALIRHFP 201
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ +F + + N V + GADG+KTG+ ASGFN+ +SA++ + L+AV
Sbjct: 202 NHYRFFATQSFRFGNRTITTHNHVVREYPGADGLKTGYIQASGFNVASSAVRNGRRLVAV 261
Query: 243 ILGALDRNTRNKVSASLLSMGFY 265
+ G R+ +LL GF
Sbjct: 262 VFGGQTARARDTQMMALLDEGFA 284
>gi|300705317|ref|YP_003746920.1| d-alanyl-d-alanine carboxypeptidase [Ralstonia solanacearum
CFBP2957]
gi|299072981|emb|CBJ44338.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
[Ralstonia solanacearum CFBP2957]
Length = 398
Score = 190 bits (481), Expect = 3e-46, Method: Composition-based stats.
Identities = 87/327 (26%), Positives = 146/327 (44%), Gaps = 15/327 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + L D +G V+ D PASLTKLMTAY+ F +++ K
Sbjct: 33 QPVPAPQVTARAWMLTDVTSGQVLGGGNMDERVEPASLTKLMTAYIAFEAVRDGKLKYDQ 92
Query: 79 PITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
IT ++ + S + G +++ L+ LIV+S ND A+ +AE++ TE FV
Sbjct: 93 LITPTETVRTVKTDESRMFLQAGKPVSVRELLQGLIVQSGNDAALVLAEAVGGTETNFVM 152
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN ++ LG+ THFMNA G+ HYTTARD++IL+ + +FPQ ++ K
Sbjct: 153 LMNREAERLGMKNTHFMNAAGLPDPNHYTTARDLSILTAALIKNFPQDYKFYSQKEFTYN 212
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDR 249
K PN N + DG KTG T ++G+ +V SA + + L++VI+G
Sbjct: 213 NIKQPNRNRLLWLDPTVDGGKTGHTKSAGYCLVTSANRPLPDVPGASRRLLSVIVGTKSD 272
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEE--VCTTQKEI 303
R + S +L+ G+ + + D Y+ N + + + +
Sbjct: 273 QIRTQESLKVLNYGYQFFDTLRLYDAQQVLQTPDVYKGQAKNVKIGVMDAKWITVPKGMG 332
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLK 330
+ ++ + + + +K
Sbjct: 333 GHLKPVLERKDPLIAPIAQGQPLGTVK 359
>gi|198284286|ref|YP_002220607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665720|ref|YP_002426947.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198248807|gb|ACH84400.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218517933|gb|ACK78519.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 388
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 90/347 (25%), Positives = 145/347 (41%), Gaps = 18/347 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-------------YYTLLDTNTGHVIAENYPDHP 50
+ I + F + A T YTL+D +TG +IA +
Sbjct: 7 LITRILFLLAGFCFTPWASAATPTPMLPTPPAPALPAIVSYTLMDYDTGQIIAAKSENLR 66
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PASLTKLMTAY+ + ++ I IS A + S+ + +D L
Sbjct: 67 RAPASLTKLMTAYLTYQAIQGGTLTAQENIPISNTAWKTGGSSMFVQPNVPANVDQLLHG 126
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
L++ S ND AVA+AE++ ++ FV MN+++ L L TH+ N G+ + YTTA D+
Sbjct: 127 LLIDSGNDAAVALAEAVGGSQSGFVTLMNDSALRLNLHNTHYSNVDGLPDNNLYTTALDV 186
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
A LS FPQ + + K G + N + DG+KTG T ASG+ I A
Sbjct: 187 AKLSRAFIRQFPQVIQITKEKSYTYNGITQRSWNPVLFRDPTVDGLKTGLTDASGYCIDA 246
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE-- 288
+AI+ + LIAV+LG +LL G+ + K
Sbjct: 247 TAIRNGRRLIAVVLGGPSWAGSTNAVEALLDYGYRFFVNHPVYTAGEKVSEISRSDLSPM 306
Query: 289 --VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ + V T + +++ + + + +K T++ +
Sbjct: 307 HIPVGVEQNVDITVPKG-RFSSLQRVVEIAPHLQVPMKKGTVVGRLV 352
>gi|134300784|ref|YP_001114280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
MI-1]
gi|134053484|gb|ABO51455.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
MI-1]
Length = 397
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 79/313 (25%), Positives = 130/313 (41%), Gaps = 14/313 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
++D TG V+ P AS TK+MTA V L + ++S+
Sbjct: 60 LSAYSALVMDAATGQVLFAKNPHQARAIASTTKIMTALVAIEC-----GNLNSATSVSQR 114
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A+ S+ K +TL+ L +++S ND VAIAE + E FV MN ++ L
Sbjct: 115 AAGVEGSSVYLKPNEKLTLEQLLYGALMRSGNDACVAIAEQIAVREDIFVGFMNMKARQL 174
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYPN 202
G THF N++G+ HY++A D+A+++ + + + N
Sbjct: 175 GAKNTHFCNSNGLPNDHHYSSAYDLALITRAALKNPVFSRIVSTKTHVIPGTEGKRLLSN 234
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
TN + ++ GADG+KTG T A+G +V+SA + + LIAV+L + D R S LL+
Sbjct: 235 TNKMLWSYQGADGVKTGTTNAAGKCLVSSASRDGRRLIAVVLHSDD---RWNESIKLLNY 291
Query: 263 GFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
GF R+ ++ + + VP I +E +
Sbjct: 292 GFNRFEQRRVVDAGKTFASVEVRDGVLGRVPITVNRDVVVTVPIDRTGKLEQEVMLERKI 351
Query: 320 FIDFEKITLLKNK 332
++
Sbjct: 352 SAPVFPGQVVGKL 364
>gi|148252530|ref|YP_001237115.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
BTAi1]
gi|146404703|gb|ABQ33209.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
BTAi1]
Length = 480
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 100/287 (34%), Positives = 157/287 (54%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L++ +TG V+ +PW PAS+TKLMTAYV +KE K L T +T+S
Sbjct: 29 ANAEALLLVEADTGKVLEAQNATYPWYPASVTKLMTAYVTLKAVKEGKLSLDTLVTVSPT 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A+ PS ++ G+ +T+DNALK+++VKSAND+AV +AE + + F MN T++ L
Sbjct: 89 AAAQSPSKMGYRPGTQLTVDNALKMMLVKSANDMAVVLAEGVGGSIDGFSAMMNETAQKL 148
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
G++ T ++N +G+ G T+ARD+AIL+ I D P+Y ++ I + + N N
Sbjct: 149 GMTQTSYVNPNGLPADGQITSARDLAILARAIIRDLPEYEYFVHIPSIRYGRRVVQNFNR 208
Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+G + GADG KTGF CASG+N+VASA + + LIAV+LGA R + +L GF
Sbjct: 209 LIGRYPGADGFKTGFICASGYNLVASATRNGKRLIAVVLGASSGQMRGVRAIQMLDRGFN 268
Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
+ + PN+ +++C ++ + +
Sbjct: 269 GNQLGWLKAPLGNVEQLVPVDATPPNLRDDMCGGKRHRPASDDDEET 315
>gi|238795791|ref|ZP_04639304.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC
43969]
gi|238720254|gb|EEQ12057.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia mollaretii ATCC
43969]
Length = 424
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 95/315 (30%), Positives = 144/315 (45%), Gaps = 11/315 (3%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
Y L+D N+G V+ E D +PASLTK+M++YV+ +K K +T+ K+A
Sbjct: 64 KAYVLMDFNSGKVLVEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWA 123
Query: 89 YPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
K G + L + K ++++S ND ++A+A+ + ++ FV MNN +
Sbjct: 124 TGNPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYVAGSQDSFVGLMNNYA 183
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
K LGL+ THFM HG+ G Y+TARDMA+L + D P+ + K + N
Sbjct: 184 KALGLTNTHFMTVHGLDAPGQYSTARDMAVLGQALIRDVPEEYALHKEKEFTFNNIRQIN 243
Query: 203 TNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N T L DGMKTGFT +G N+VASA G LI+V+LGA R S LL+
Sbjct: 244 RNRLLWSTNLNVDGMKTGFTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLT 303
Query: 262 MGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
GF I + + ++E+ T + N + D+
Sbjct: 304 WGFRFYETVVPIKATKPFVTQKVWFGDTGQAELGVAEDAAITIPKGQMKNLKASYKLDQT 363
Query: 318 SHFIDFEKITLLKNK 332
K ++
Sbjct: 364 ELRAPLAKHQVVGTI 378
>gi|84516821|ref|ZP_01004179.1| D-alanyl-D-alanine carboxypeptidase [Loktanella vestfoldensis
SKA53]
gi|84509289|gb|EAQ05748.1| D-alanyl-D-alanine carboxypeptidase [Loktanella vestfoldensis
SKA53]
Length = 392
Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats.
Identities = 77/337 (22%), Positives = 147/337 (43%), Gaps = 10/337 (2%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+IA ++ + A + D TG V+ D P PAS++KLMT Y+ F
Sbjct: 8 LIAGLIMICATAAQAQALETSARAAYVYDQTTGTVLLAKDADLPLPPASMSKLMTIYMAF 67
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ + + + + +S +A+ + S+ + +++ L+ +IV S ND +V +AE+
Sbjct: 68 EAIADGRLSIDDVLPVSAHAASFGGSSMFLDTTDRVRVEDLLRGVIVLSGNDASVVLAEA 127
Query: 127 LCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
L E F + M + ++ LG++ + F+NA G H + +D+ ILS R+ +DFP +
Sbjct: 128 LSPDGTEAGFGRMMTDRARQLGMTQSFFVNASGWPAAEHRMSVKDLGILSSRLISDFPTF 187
Query: 185 MHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
F + N N + +GADG+KTG T +G+ +V SA+QG++ +I
Sbjct: 188 YPLFSETEFAFDNRVPSNSQNRNPILAMGIGADGLKTGHTQEAGYGLVGSAMQGNRRVIF 247
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVC 297
V+ G R + S +++ F +R + D + + ++E++
Sbjct: 248 VVTGLQTARDRAEESERIVNWAFRQFAERDLAVAGTQIASADVWMGAAPSVGLTVAEDLR 307
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + + D + I
Sbjct: 308 LLVPVLHDGALDAQVIFD-GPLQAPVSAGQQVGELII 343
>gi|85707408|ref|ZP_01038489.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
217]
gi|85668064|gb|EAQ22944.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
217]
Length = 480
Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats.
Identities = 105/326 (32%), Positives = 167/326 (51%), Gaps = 6/326 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R LV++A + I P + A ++D +G V+ N D +PASLTK+MT
Sbjct: 10 RWGLVVMATFWMLIIVPLSAAAAPYAA---LVMDARSGEVLYSNNADTRLHPASLTKMMT 66
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
YVVF ++ + L + ISK+A+ PPS + GS++ L ++ VKSAND A
Sbjct: 67 LYVVFEAIENGEIGLDDKVLISKHAASEPPSKLGVRAGSSIALRYLIRAAAVKSANDAAT 126
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+ E++ +E +F + MN T+++LG+S T F NAHG+ ++GH +TARDM+IL + DF
Sbjct: 127 ALGEAIEGSEAQFARRMNRTAESLGMSRTTFKNAHGLTENGHLSTARDMSILGRHLFYDF 186
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
PQY + F + +TN + + GADG+KTG+T A+GFN+ ASA + + +I
Sbjct: 187 PQYYNLFSRITTDAGVTSVSHTNRRLLEAYRGADGIKTGYTRAAGFNLTASAERNGERII 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS--EEVCT 298
A + G +RN A LL +GF + + + Y + I+ E+ +
Sbjct: 247 ATVFGGQSTASRNAKVAELLDLGFKKAPTQVAVLRPARPPYLGKIGTVPVRIAAGEDRPS 306
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFE 324
+ + T K +
Sbjct: 307 VAAKTVRLATAAAVIKSLRPQSRPSQ 332
>gi|197104762|ref|YP_002130139.1| D-alanyl-D-alanine carboxypeptidase [Phenylobacterium zucineum
HLK1]
gi|196478182|gb|ACG77710.1| D-alanyl-D-alanine carboxypeptidase [Phenylobacterium zucineum
HLK1]
Length = 417
Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats.
Identities = 102/322 (31%), Positives = 158/322 (49%), Gaps = 11/322 (3%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
P+ +A+T+ ++D TG V+ EN D P PAS+TK+MT Y+ F L K
Sbjct: 29 AQIPYQMLAQTSSKYAAIVVDAKTGEVLYENRADSPRYPASITKVMTLYLTFEALASGKI 88
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L + S A+ PP+ + G ++++D A+K L KSAND AVA+AE L TE++F
Sbjct: 89 DLDDRVVFSPRAAAQPPTKLGVRAGDSISVDEAMKALATKSANDAAVALAEKLAGTEQRF 148
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
M ++ LG++ T+F NA G+ +TARD+AILS + D+PQY F ++
Sbjct: 149 AALMTLRARELGMTDTNFANASGLPDSRQVSTARDIAILSRAVMRDYPQYYKLFSLQYFN 208
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+G+ N N + G DG+KTGF ASGFN+ ASA++ + LIAV+LG R+
Sbjct: 209 FRGQTMRNHNGLLHRMDGVDGLKTGFINASGFNLAASAVRDGRRLIAVVLGGPTSRARDN 268
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
+ SLL GF + + +++ + + + K
Sbjct: 269 NAESLLLTGF---------EVLDRRARGEDIQVAQSFFESPMTGGRVQPQTAQGDEDSMK 319
Query: 315 DKESHFIDFEKITLLKNKITKK 336
+ I K +I +K
Sbjct: 320 IVLASTAP--PIRASKVEIVEK 339
>gi|295100396|emb|CBK97941.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
L2-6]
Length = 418
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 12/316 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +G V+ E D AS+TK+MT + F + + + + TP+ +S+
Sbjct: 65 DLNCRAAILIEQGSGRVLYEKNADERVPIASITKVMTLLLAFEAVHDGRLTMETPVPVSE 124
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A S + G TLD +K + V SAND AVA+AE + +E FV+ MN + +
Sbjct: 125 HAYHMGGSQIWLEPGEHFTLDEMIKAICVSSANDAAVAVAELVGGSEPAFVEQMNARAAS 184
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ--YMHYFQIKGLEIKGKKYPN 202
LG+ T F NA G+ GH +TARD+A +S I P+ + L + N
Sbjct: 185 LGMEQTSFRNACGLDAEGHLSTARDVAAMSRTILNTCPEVLHYTGIWTDTLRGGATQLIN 244
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
TN + + G G+KTG T +G I ASA + SLIAVILGA R + +LL
Sbjct: 245 TNKLLRRYEGITGLKTGTTGGAGICISASATRNGLSLIAVILGAPSSADRFNAATTLLDY 304
Query: 263 GFYNKTD---RKKINYIIKDFYQQNLSNEVPN----ISEEVCTTQKEIINYNTQMKEAKD 315
GF K ++ + + + VP + E V + + +T++ ++
Sbjct: 305 GFGAYEAAPLPKLEAQPLQITVKGSAAGSVPLDYSALPETVLVEKGSGASLHTELTLPEE 364
Query: 316 KESHFIDFEKITLLKN 331
E E+ L
Sbjct: 365 LE---APVERGQTLGK 377
>gi|302389347|ref|YP_003825168.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
oceani DSM 16646]
gi|302199975|gb|ADL07545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
oceani DSM 16646]
Length = 410
Score = 189 bits (479), Expect = 5e-46, Method: Composition-based stats.
Identities = 78/329 (23%), Positives = 138/329 (41%), Gaps = 18/329 (5%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++ + L+D TG V+ E PAS TK+MT + K
Sbjct: 19 STSKVTAAPSPPSIVGTAGILMDVKTGKVLYEKNAHLKLEPASTTKIMTTVIALEKGK-- 76
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L+ + + + + ++G +TL+ L +++ S ND AVAIAE + +
Sbjct: 77 ---LSDTVVTGREPTLADGTRIYLEEGEKLTLEQMLYGMMLNSGNDAAVAIAEHIAGSVP 133
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+F + MN ++ +G T+F+N G+ HYTTA D+A++S + P++ K
Sbjct: 134 EFAKLMNEKAREIGAKNTNFVNPSGLPDKNHYTTAYDLALISRYALLNHPEFRKIVSTKT 193
Query: 193 LEIKGKK------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+I + N N + + G DG+KTG+T ++G VASA + L+AV+L +
Sbjct: 194 FKIPWQGKEWDRLLINHNKMLWRYEGTDGVKTGYTRSAGQTFVASATRNGWQLLAVVLKS 253
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI--SEEVCTTQKEII 304
RN + +LL GF N + IN ++ + + ++
Sbjct: 254 QGRNI-YSDAQALLDYGFDNFEKKDVINKGQIIDKIDVKYGTPVDLLAASDFTAVVEKG- 311
Query: 305 NYNTQMKEAKDKES-HFIDFEKITLLKNK 332
+ + K+ K +L N
Sbjct: 312 --SGPIDVKKNIYPGVKAPVVKGQVLGNL 338
>gi|254486408|ref|ZP_05099613.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. GAI101]
gi|214043277|gb|EEB83915.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. GAI101]
Length = 389
Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats.
Identities = 81/343 (23%), Positives = 145/343 (42%), Gaps = 14/343 (4%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
I A + + A + ++D TG V+ D P PAS++KLMT Y+ F
Sbjct: 4 IFAATIALILTTLPGHAFETRASAAYVIDQTTGTVLLAKNADDPLPPASMSKLMTLYMAF 63
Query: 67 SFLKEKK----AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
++ K LT + +S++A Y S + +++ L+ +IV S ND
Sbjct: 64 EAVERGKSNGGLDLTEELPVSQHAMSYGGSTMFLDTTDRVKVEDLLRGIIVLSGNDACAV 123
Query: 123 IAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
IAE+L E F + M ++ +G++ + F N++G GH + RD+ +++ R+ TD
Sbjct: 124 IAEALSPDGTEAGFARLMTRRAQQIGMTNSTFANSNGWPAAGHRMSMRDLGLVAMRLITD 183
Query: 181 FPQYMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
FPQY F + + N N +G +GADG+KTG T +G+ +V SA QGD+
Sbjct: 184 FPQYYPLFSQREFLFDGRAPQNKANRNPLLGLGIGADGLKTGHTQEAGYGLVGSAKQGDR 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNIS 293
+I VI G R + S ++++ F R+ + + + ++
Sbjct: 244 RVIFVISGLETAAERAQESEAIVNWAFRQFAQREMGSAGTQIAQAPVALGAQTAVGLELA 303
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ + K + + +
Sbjct: 304 NDLSVLIPVSGGSEINAEVV-YTGPLRAPILKGDPIGELVLTR 345
>gi|170744322|ref|YP_001772977.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
4-46]
gi|168198596|gb|ACA20543.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
4-46]
Length = 402
Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats.
Identities = 84/318 (26%), Positives = 142/318 (44%), Gaps = 11/318 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++ P+ LLD ++G V+ E D P++PAS+ KLMT V+F +++ + + IS
Sbjct: 34 FQSQAPHAILLDADSGSVLYEKNADEPFSPASMAKLMTVEVIFDEMRKGRLNQDSEFPIS 93
Query: 84 KNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+NA ++ + + + S + L + L+ +IV+S ND A+A AE++ TE F Q M
Sbjct: 94 ENAWKHGGAGGGGSSMFAQLNSKVKLPDLLRGIIVQSGNDAAIAAAEAIGGTEDNFAQIM 153
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ +GL+ + F N G TARD+A L+ + +P F +
Sbjct: 154 NRHAREIGLTRSTFRNPTGYSAPDQKVTARDLAKLAIHLIETYPDEYKLFSEREFTWNKI 213
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ N N + LGADG+KTG+ SG+ + SA+Q Q LI V+ G + R S
Sbjct: 214 RQQNRNPLLTMDLGADGLKTGYLEESGYGLTGSAVQNGQRLILVVSGLKKASDRAAESRK 273
Query: 259 LLSMGFYNKTDRKKINYIIKDF------YQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
LL GF R+ ++ V V + ++
Sbjct: 274 LLDWGFRAFEGRQVFAPGETVAEVDTYGGEKGKVALVAKKPVRVLLPRGSADRLTARVVY 333
Query: 313 AKDKESHFIDFEKITLLK 330
++ ++ LK
Sbjct: 334 QGPLKAPIEAGREVARLK 351
>gi|163760149|ref|ZP_02167232.1| penicillin binding protein [Hoeflea phototrophica DFL-43]
gi|162282548|gb|EDQ32836.1| penicillin binding protein [Hoeflea phototrophica DFL-43]
Length = 394
Score = 189 bits (478), Expect = 6e-46, Method: Composition-based stats.
Identities = 72/342 (21%), Positives = 139/342 (40%), Gaps = 10/342 (2%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ + + + +LD +TG V+ + PASL KLMT
Sbjct: 17 RLFFAFLVLFAGFTGAVRAQLFETRAEQAYMLDADTGTVLFSKNENDLVPPASLAKLMTM 76
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAN 117
VVF+ ++ + L +S+NA S + S++ L++ ++ +IV+SAN
Sbjct: 77 EVVFNAIRSGRLTLDDTFQVSENAWRTGGAISRTSTMFAELNSSIRLEDLIQGVIVQSAN 136
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D + IAE + +E F + M+ ++++GL+ + F N+ G+ + +D+ L+ I
Sbjct: 137 DGCIIIAEGMAGSEDNFSRLMSERARDIGLTQSVFANSSGLPHPHSKVSMKDLVTLARHI 196
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+P++ Y+ + N N + +G DG+KTGFT SG+ IVAS + +
Sbjct: 197 HATYPEFYRYYSQPEFTWNNIRQRNRNPLLNLDIGVDGLKTGFTEESGYGIVASIRRDGR 256
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNI-- 292
L + G R + + +L G + I + +N V
Sbjct: 257 RLFVAMSGLSSERERAEEARKMLEWGVRAFERKTLFAADEIIGELSVYGGEANAVVKAAG 316
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ ++ ++ + ++ +LK I
Sbjct: 317 AVDILVPITNRDRLTARISYRWPLRAPLEAGAEVGMLKVYIG 358
>gi|84516588|ref|ZP_01003947.1| Probable penicillin-binding protein [Loktanella vestfoldensis
SKA53]
gi|84509624|gb|EAQ06082.1| Probable penicillin-binding protein [Loktanella vestfoldensis
SKA53]
Length = 521
Score = 189 bits (478), Expect = 7e-46, Method: Composition-based stats.
Identities = 92/277 (33%), Positives = 145/277 (52%), Gaps = 6/277 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ ++ +++ ++ ++D TG V+ D +PASLTK+MT Y
Sbjct: 14 YFCVLIFILIAAPIRGVAAP-----YAALVMDARTGEVLHARNADTRLHPASLTKMMTLY 68
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
V F ++ + L T +T++ +A+ PPS + G + L ++ V+SAND A AI
Sbjct: 69 VAFQAIERGEISLDTEVTVTSHAANEPPSKLGLRAGQRIRLRYLIRAAAVRSANDAATAI 128
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
++ +E+ F MN T+ +G+S T F NAHG+ Q GH +TARDM++L + DFPQ
Sbjct: 129 GIAISGSEEAFATRMNQTAAAMGMSNTTFRNAHGLTQSGHLSTARDMSVLGRHVIYDFPQ 188
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
Y + F + + +TN ++ G DG+KTGFT ASGF++VASA +GDQ +IA
Sbjct: 189 YYNLFSRRTADAGVATVQHTNRRWLDSYPGGDGIKTGFTNASGFSLVASAQRGDQRIIAT 248
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
+ G RN + L+ MGF +N
Sbjct: 249 VFGGTSTAARNARISELMDMGFSTAPRSANVNRPTPP 285
>gi|291545871|emb|CBL18979.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
Length = 395
Score = 189 bits (478), Expect = 7e-46, Method: Composition-based stats.
Identities = 88/329 (26%), Positives = 156/329 (47%), Gaps = 20/329 (6%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ P L++ TG VI PD +PAS+TK+MT ++F ++E L IT S
Sbjct: 39 IEAPGAVLMEKETGTVIYSRDPDTRRSPASITKIMTLILIFDAIREGTLHLEDSITTSAY 98
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A S ++G T + +K +++ S ND +VA+AE + TE+ FV+ MN +K+L
Sbjct: 99 ARSMGGSQVFLEEGEKQTAETMIKCIVIASGNDASVAMAEHVAGTEQAFVERMNERAKDL 158
Query: 146 GLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------- 197
G+ THF++ G+ HYTT D+A++S + + +P+ + Y + +I
Sbjct: 159 GMKNTHFVDCCGLTESQEHYTTPYDIALMSRELISRYPEVLTYSSVWIEDITHVTRKGSS 218
Query: 198 -KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
NTN + ++ G G+KTG T + + + A A + +LIA ++ A D TR + +
Sbjct: 219 KFTLTNTNKLLRSYEGCMGLKTGSTSIAKYCLSAVAERNGITLIASVMAAPDPKTRFRDA 278
Query: 257 ASLLSMGFYNKTDR--KKINYIIKDFYQQNLSNEVPNIS----EEVCTTQKEIINYNTQM 310
A+LL+ GF T + + ++ + +VP + + T + N ++
Sbjct: 279 AALLNYGFSKCTLYLDDALEPLKPLKLRKGVKEQVPLVYRGKFRYISTDGTKPDNVKKKL 338
Query: 311 KEAKDKESHFIDFEKIT-----LLKNKIT 334
K++ + +K KI
Sbjct: 339 ILPKEQSAPVKKGQKAGAQEYYQDGKKIG 367
>gi|225872450|ref|YP_002753905.1| D-alanyl-D-alanine carboxypeptidase family protein [Acidobacterium
capsulatum ATCC 51196]
gi|225792978|gb|ACO33068.1| D-alanyl-D-alanine carboxypeptidase family protein [Acidobacterium
capsulatum ATCC 51196]
Length = 414
Score = 189 bits (478), Expect = 7e-46, Method: Composition-based stats.
Identities = 86/264 (32%), Positives = 142/264 (53%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+Q L+ +++ ++ + L+D +G V+ + D +PASLTKLMT
Sbjct: 17 KQSLLSAGCLLMALTALAMARPAQAVVHASLLMDARSGKVLYAYHADERTHPASLTKLMT 76
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
Y+ F L++ + L + IS +A+ PS G T+++ + + +I SAND AV
Sbjct: 77 LYLTFQRLQDGRMRLDERLHISAHAAGQQPSKMWLHAGGTVSVRSCILGIISHSANDAAV 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+AE + TE +F + MN ++ LG++ T F NA G+ +TTA DMA L+ + F
Sbjct: 137 TLAEGMAGTEWRFTRLMNEQARRLGMTHTIFYNASGLPDGRQWTTAYDMAKLARALIYTF 196
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
PQY H+F + +G+ + + + G DGMKTG+ +SGFNIV SA++ +I
Sbjct: 197 PQYYHFFSVHAFRYQGRMLYSFDRLPQEYTGVDGMKTGYINSSGFNIVTSAVRNHHRVIG 256
Query: 242 VILGALDRNTRNKVSASLLSMGFY 265
V+LG ++R+ +LL+ GF
Sbjct: 257 VVLGGATAHSRDLQMIALLNRGFR 280
>gi|269102681|ref|ZP_06155378.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268162579|gb|EEZ41075.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 348
Score = 189 bits (478), Expect = 8e-46, Method: Composition-based stats.
Identities = 83/308 (26%), Positives = 135/308 (43%), Gaps = 7/308 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYP 90
+D +TG V+ E+ + NPASLTKLMT+YV +K+ + IS+NA +
Sbjct: 1 MDYHTGRVLVEHNANEKLNPASLTKLMTSYVAGQEMKQGNISKDDVVVISRNAWARNFHD 60
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
S + G+ + + + + LI++S ND +VAIAE + ++ FV MN+ +K L ++ +
Sbjct: 61 SSKMFIEVGAEVPMMDLFRGLIIQSGNDASVAIAEHVAGSQDAFVGLMNSWAKKLNMNNS 120
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGT 209
F NAHG+ Y+T D+A+L + D P + K N N +
Sbjct: 121 RFANAHGLDHDDLYSTPYDIALLGQALIRDLPDIYPLYSEKSFTYNNITQRNRNGLLHDS 180
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ DGMKTG+T +G+++ +SA +GD LIAV++G R S LL+ GF
Sbjct: 181 SMNVDGMKTGYTGGAGYSLASSATEGDMRLIAVVMGTKSPKIRQAESKQLLNYGFRFFDT 240
Query: 270 RKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
+ + +V E + + EK
Sbjct: 241 VSPHKAGDEIMTERIWMGDKEQVKLGVAETSYVTLSRNDVKKMTASVEMTGQLEAPIEKG 300
Query: 327 TLLKNKIT 334
+ I
Sbjct: 301 QQVGKVIY 308
>gi|255744731|ref|ZP_05418682.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101]
gi|262161135|ref|ZP_06030246.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1]
gi|255737762|gb|EET93156.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholera CIRS 101]
gi|262028885|gb|EEY47538.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae INDRE 91/1]
Length = 347
Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats.
Identities = 84/310 (27%), Positives = 143/310 (46%), Gaps = 9/310 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYP 90
+D ++G V+AE D +PASLTK+MT+YV+ +K L + ISKNA
Sbjct: 1 MDYHSGKVLAEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPD 60
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
S + G+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ +
Sbjct: 61 SSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNS 120
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGT 209
HF N+HG+ Y+T D+A+L + D P+ + + G N N
Sbjct: 121 HFTNSHGLDDPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDK 180
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ DG+KTG T +G+N+V+SA +G+ L+AV++G + N R S LLS GF
Sbjct: 181 SMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFET 240
Query: 270 RKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ + + + ++ T + +K+ +K
Sbjct: 241 VAPHKAGETFVNETIWMGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQ-LKAPLKK 299
Query: 326 ITLLKNKITK 335
++ +
Sbjct: 300 GDIVGTLYYQ 309
>gi|71083689|ref|YP_266409.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
ubique HTCC1062]
gi|71062802|gb|AAZ21805.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
ubique HTCC1062]
Length = 383
Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats.
Identities = 81/325 (24%), Positives = 140/325 (43%), Gaps = 13/325 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ A K L D +G ++ E D PAS+TK+MTA + F ++ L
Sbjct: 19 ANAAFDVKARTAILQDYLSGEILFEKDADKSIYPASMTKIMTAIIAFDLIRSGDLSLDEK 78
Query: 80 ITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+S+NA S+ G ++++N LK +I+ S ND VA+AE + TE +F
Sbjct: 79 FLVSENAWRLSSAGYSSMFIMVGDEVSVENLLKGIIIASGNDACVALAEGIAGTEDEFAV 138
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
M +K +G++ T+F N+ G+ + +T RD+ ++S + +FP+ YF K
Sbjct: 139 MMTAKAKEIGMNNTNFANSSGINDTENLSTVRDIMLMSNYLIKEFPEEYKYFAEKEFTWN 198
Query: 197 -----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
N N + LGADG+KTG+ +++ +S + + LIAV G +N
Sbjct: 199 RTGGDPITQGNRNPLLYKSLGADGIKTGYLAVEKYSLASSVERNGRRLIAVGSGFNTKND 258
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R++ SA LL+ G N + D + I ++ T +
Sbjct: 259 RSRESAKLLTWGLTNFDLVEITKANTPIEDIDVWLGKKDTVKTYIKNDIYKTIPKAKKRL 318
Query: 308 TQMKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 319 LKVSLNYN-GPIQAPIKKDDILGKL 342
>gi|17545046|ref|NP_518448.1| penicillin-binding transmembrane protein [Ralstonia solanacearum
GMI1000]
gi|17427336|emb|CAD13855.1| probable penicillin-binding (d-alanyl-d-alanine carboxypeptidase)
transmembrane protein [Ralstonia solanacearum GMI1000]
Length = 397
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 82/321 (25%), Positives = 148/321 (46%), Gaps = 15/321 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L D +G V+ D PASLTKLMTAY+ +++ K +T ++
Sbjct: 38 QVAARAWMLTDVTSGQVLGGGNVDERIEPASLTKLMTAYLAVEAVRDGKLKYDQMLTPTE 97
Query: 85 --NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ + S + G +++ + L+ LIV+S ND A+ +AE++ TE FV MN +
Sbjct: 98 TVRSVKTDESRMFLQPGKPVSVRDLLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREA 157
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ LG+ THFMNA G+ HYTTARD++IL+ + DFP+ ++ K K PN
Sbjct: 158 ERLGMKGTHFMNAAGLPDPNHYTTARDLSILTAALIRDFPEDYKFYSQKEFTYNNIKQPN 217
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKV 255
N + DG+KTG T ++G+ ++ SA + + L++V++G R +
Sbjct: 218 RNRLLWIDPTVDGVKTGHTKSAGYCLITSAKRPLPDVPNASRRLLSVMIGTKSEQVRTQE 277
Query: 256 SASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQ 309
S +L+ G+ + D Y+ ++E+ + +
Sbjct: 278 SLKVLNYGYQFFDTLRLYEAKQALQTPDVYKGQAKTVKLGVAEDKWITVPKGSGGRLKPV 337
Query: 310 MKEAKDKESHFIDFEKITLLK 330
++ + + +++ +K
Sbjct: 338 LERKEPLIAPIAQGQQLGTVK 358
>gi|163733947|ref|ZP_02141389.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter
litoralis Och 149]
gi|161393058|gb|EDQ17385.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseobacter
litoralis Och 149]
Length = 511
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 101/324 (31%), Positives = 158/324 (48%), Gaps = 6/324 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L A+ + I P + A ++D TG V+ D +PASLTK+MT Y+
Sbjct: 37 LYAFAVLWMLVILPLSAAAAPYAA---FVMDARTGEVLHSRNADTRLHPASLTKMMTLYI 93
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F ++ + L T + IS+ A+ PPS K G + ++ +KSAND A AI
Sbjct: 94 AFQAVENGEISLDTKVKISRFAASEPPSKLGLKSGQRIAFRYLIRAAAIKSANDAATAIG 153
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E+L +E F + M T+K LG++ T F NAHG+ + GH +TARDM++L + D+P+Y
Sbjct: 154 EALEGSEAAFARRMTRTAKELGMTRTTFKNAHGLTESGHMSTARDMSLLGRHVLYDYPEY 213
Query: 185 MHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ F + + NTN + + GADG+KTG+T A+GFN+VASA +G + +IA +
Sbjct: 214 YNLFSRRSTHAGVRDVANTNRRLLAAYRGADGIKTGYTRAAGFNLVASAERGQERIIATV 273
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE- 302
G RN A LL MGF R + K Y + + + + + +
Sbjct: 274 FGGTSTIARNARVAELLDMGFKRAPSRATVRKPQKPSYFASSRQGTRDATIMTASLRPQI 333
Query: 303 -IINYNTQMKEAKDKESHFIDFEK 325
+ + + E E+
Sbjct: 334 RPTVASAAVASPVNAEDIIAAVEE 357
>gi|332798926|ref|YP_004460425.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp.
Re1]
gi|332696661|gb|AEE91118.1| Serine-type D-Ala-D-Ala carboxypeptidase [Tepidanaerobacter sp.
Re1]
Length = 415
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 83/339 (24%), Positives = 145/339 (42%), Gaps = 16/339 (4%)
Query: 5 LVIIAMAMLSNIFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
++ + ++ F + + L+D +TG V+ E PAS TK+M
Sbjct: 14 VLFLFSFLIPISFANGAEQTESLPSISGETGILIDASTGKVLYEKNAYTRMEPASTTKIM 73
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA + L+ +T K + + ++G +TL+ L +++ S ND A
Sbjct: 74 TAILALEK-----GNLSDVVTTGKQPTLADGTRIYLEEGEQLTLEQMLYGMMLNSGNDAA 128
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+AIAE + + + FV+ MN ++ +G T F+N +G+ GH TTA D+A++S +
Sbjct: 129 IAIAEHIGGSVEAFVEMMNEKAREIGAKDTTFVNPNGLPAKGHLTTAYDLALISRYALLN 188
Query: 181 FPQYMHYFQIKGLEIKGK------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
P++ K EI + + N N + + GADG+KTG+T +G +VASA +
Sbjct: 189 LPEFRKIVSTKNAEIPWQAQDSDRQLINLNKLLWNYEGADGVKTGYTSTAGSTLVASATR 248
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
LI+VIL + N SA+LL GF N + ++ ++ + +
Sbjct: 249 NGWQLISVILKSDAINV-WHDSAALLDYGFTNFERKNILSENTLITEEKVKYGDSIGLLA 307
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
N ++ K +L I
Sbjct: 308 NTSFITVLPKNGPDVTQKVVINPDIKAPVIKGEILGQVI 346
>gi|167567676|ref|ZP_02360592.1| family S11 unassigned peptidase [Burkholderia oklahomensis EO147]
Length = 328
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 11/275 (4%)
Query: 2 RQFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
R+ L + + S S A + + ++D ++G +AE+ PASLTKL
Sbjct: 23 RRILGAMLVVATSIAANGAQASPAPQIQAVSWLVVDADSGKTLAEHNVSARREPASLTKL 82
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSA 116
MTAY+ LK+ + I+ + + G + + + ++ LIV SA
Sbjct: 83 MTAYLALDALKQGTLRWDEKVEIAADDIASVGNDEARMYLAPGQRVQVRDLVRGLIVASA 142
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A+ +A+ + + F + MN+ ++ LG+ +HF++ G+ HY+TA D++IL+
Sbjct: 143 NDAALVLAKRIGGSPAGFAKRMNDAAQRLGMRDSHFVSPSGITTPDHYSTAHDLSILARH 202
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG- 235
+ DFP++ + + E N N + DGMKTG T A+G+ +V +A +G
Sbjct: 203 LNQDFPEFYTFSSQQHFEYGKFAKTNKNRLLRADPTVDGMKTGHTNAAGWCMVVTAKRGV 262
Query: 236 -----DQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+IAV+LG R + LL GF
Sbjct: 263 AGSHAKHRVIAVLLGEPTEKQRLADAKRLLDWGFA 297
>gi|158422626|ref|YP_001523918.1| serine-type D-Ala-D-Ala carboxypeptidase [Azorhizobium caulinodans
ORS 571]
gi|158329515|dbj|BAF87000.1| serine-type D-Ala-D-Ala carboxypeptidase [Azorhizobium caulinodans
ORS 571]
Length = 512
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 105/302 (34%), Positives = 169/302 (55%), Gaps = 1/302 (0%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+LS + + L++ +TG V+ + PW PAS+TKLMT YV + +KE
Sbjct: 61 LLSATALLCAAGASVNAAPVLLVEADTGRVLEQQDAGKPWYPASVTKLMTVYVALNAVKE 120
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ + +T+S A+ PS FK G+ +TL+NAL++L+VKSAND+AV IAE + +
Sbjct: 121 GRISFDSLLTVSPLAASQQPSKMGFKPGTQLTLENALRMLMVKSANDMAVVIAEGVGGSM 180
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
FV+ MN+T++ LG++ TH+ N +G+ G TTARD+A+L+ + FP+ F+I
Sbjct: 181 PAFVEEMNDTAERLGMAGTHYNNPNGLPDPGQITTARDLAVLARALIYHFPEQETLFRIP 240
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + Y N N + + GADGMKTGF C++GFN+VA+A +G++ LIAVILGA
Sbjct: 241 AMRLGKVVYRNYNRLIDRYPGADGMKTGFICSAGFNLVATATRGNKRLIAVILGAPSAVA 300
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
R + +A LL GF + + Q+ E ++ +C +++ + +
Sbjct: 301 RTEQAAMLLEKGFQ-PSWSIFASAAPTLNSIQDTGGEPTDMKPYICGGKRKELASENEDD 359
Query: 312 EA 313
Sbjct: 360 AI 361
>gi|260574206|ref|ZP_05842211.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2]
gi|259023672|gb|EEW26963.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2]
Length = 548
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 93/265 (35%), Positives = 142/265 (53%), Gaps = 6/265 (2%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R L+ + + + + P + ++D TG I D +PASLTK++T
Sbjct: 10 RNLLLTSFVLVCAFVSPAGAAP-----YAAIVIDARTGETIYAKNADTRLHPASLTKMLT 64
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
Y+ F ++ + L T +T+SK+A+ PPS + G + L ++ +KSAND A
Sbjct: 65 LYITFGAIERGEISLDTMVTVSKHAASEPPSRLGLRAGQKIALRYLIRAAAIKSANDAAT 124
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
AI E++ +E KF + MN T+K LG+ + F NA+G+ GH +TARDM L + DF
Sbjct: 125 AIGEAVGGSEAKFAERMNRTAKALGMRNSTFRNANGLTTPGHMSTARDMTTLGRHLFYDF 184
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
PQY + F + + + NTN + GADG+KTG+T +GFN+ ASA +G++ +I
Sbjct: 185 PQYYNIFSRRSSDAGVAEVANTNRRFLDMYEGADGIKTGYTAPAGFNLTASAQRGNKRII 244
Query: 241 AVILGALDRNTRNKVSASLLSMGFY 265
A I G RN A LL +GF
Sbjct: 245 ATIFGGTSTAMRNAKMAELLDLGFA 269
>gi|220926670|ref|YP_002501972.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Methylobacterium nodulans ORS 2060]
gi|219951277|gb|ACL61669.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Methylobacterium nodulans ORS 2060]
Length = 403
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 83/320 (25%), Positives = 141/320 (44%), Gaps = 11/320 (3%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
++ P+ L+D ++G V+ E D P++PAS+ KLMT V+F +++ + +
Sbjct: 31 QGFQSQAPHAILVDADSGSVLYEKAADEPFSPASMAKLMTVEVIFDEMRKGRLNQDSEFP 90
Query: 82 ISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
IS+NA + + + S + L + L+ LIV+S ND A+A AE++ TE F Q
Sbjct: 91 ISENAWRRGGAGGGGSSMFAQLNSKVKLPDLLRGLIVQSGNDAAIAAAEAIGGTEDNFAQ 150
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN ++ LGL+ + F NA G TARD+A L+ + +P+ F +
Sbjct: 151 IMNRRARELGLTRSTFRNATGYSAPDQKVTARDLAKLAIHLIETYPEEYKLFAEREFTWN 210
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ N N + +GADG+KTG+ SG+ + SA+Q Q L+ V+ G R +
Sbjct: 211 KIRQQNRNPLLAMDIGADGLKTGYLEESGYGLTGSAVQNGQRLVMVVSGLKTARERAAEA 270
Query: 257 ASLLSMGFYNKTDRKKINYIIKDF------YQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
LL GF R+ ++ V V + ++
Sbjct: 271 RKLLDWGFRAFEARQVFAPGETVAEADTYGGEKGKVALVAKKPVRVLLPRGSADRLTARV 330
Query: 311 KEAKDKESHFIDFEKITLLK 330
+ + ++ LK
Sbjct: 331 VYQGPLMAPVAEGREVARLK 350
>gi|148554284|ref|YP_001261866.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii
RW1]
gi|148499474|gb|ABQ67728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii
RW1]
Length = 326
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 90/274 (32%), Positives = 144/274 (52%), Gaps = 11/274 (4%)
Query: 3 QFLVIIAMAMLSNIFPFL----SIAETNKLP-------YYTLLDTNTGHVIAENYPDHPW 51
++L +A+A+ ++ P + A L+D +T ++ P
Sbjct: 8 RWLACLALALPMSVMPLPWAVSTTAPAEAASPLGAPRFSAVLMDADTNEILYAEQPTAIR 67
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
+PAS+TK+MT Y+VF L + L + +S A+ PS G ++++ +A+ ++
Sbjct: 68 HPASITKVMTLYLVFDALDAGRLKLDDRVVMSPLAASQRPSKLGLGIGQSLSVADAISVV 127
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
VKSAND+AVA+AE + TE F + M ++ LG+ T F NA G+ GH+T+A+D+A
Sbjct: 128 AVKSANDVAVALAEKIGGTEANFARMMTAKARQLGMRQTVFANASGLPNPGHFTSAQDIA 187
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
ILS + + P H F + + N N +G G DG+KTGFT SGF + AS
Sbjct: 188 ILSAAMIRNHPARYHCFSEQSFSYGKLRMANHNKLLGNVPGVDGIKTGFTNDSGFTLTAS 247
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A++ LIAV+LG+ R++ SLL+ GF
Sbjct: 248 AVRNGHRLIAVVLGSPSGWQRDRDITSLLNAGFT 281
>gi|220927940|ref|YP_002504849.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulolyticum H10]
gi|219998268|gb|ACL74869.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulolyticum H10]
Length = 401
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 76/322 (23%), Positives = 135/322 (41%), Gaps = 12/322 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ A ++D +G V+ E + AS TK+MTA V + +
Sbjct: 50 NQAPRVSAGAAIVMDVQSGRVLYEKNAYKRSSIASTTKIMTAIVALENGSDG-----EDV 104
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+SK A+ S K G L N L L+++S ND A+AIAE + + + F + MN
Sbjct: 105 IVSKKAASIWGSRVGLKMGKIYKLGNLLNALMIRSGNDAAIAIAEHVGGSVEAFAEMMNR 164
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+ +G + T+F+ HG+ HY+T D+A+++ + ++ K +G
Sbjct: 165 KAAEIGATNTNFVTPHGLDAPQHYSTPYDLALITQYALKN-KKFCKIVSTKSSTFEGNPI 223
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN + + GADG+KTG+T +G +V SA +I+V+L R+ R + S LL
Sbjct: 224 NNTNEMLSLYPGADGVKTGYTGQAGRCLVTSATHSGWRIISVVLNCSTRSVRAQSSKILL 283
Query: 261 SMGFYNKTDRKKINYIIKDFY----QQNLSNEVPNISEEVCTTQKE--IINYNTQMKEAK 314
F N + + + + + +++ K+ + K
Sbjct: 284 DYAFGNYKIYEYLKKGGQISQVGIHKGLSNAVGICSDKDISIPLKKDEADRIKVEYDIPK 343
Query: 315 DKESHFIDFEKITLLKNKITKK 336
E+ +I + + K
Sbjct: 344 TLEAPIQKGCRIGTVNYVLDGK 365
>gi|91763271|ref|ZP_01265235.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
ubique HTCC1002]
gi|91717684|gb|EAS84335.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
ubique HTCC1002]
Length = 393
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 81/325 (24%), Positives = 140/325 (43%), Gaps = 13/325 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ A K L D +G ++ E D PAS+TK+MTA + F ++ L
Sbjct: 29 ANAAFDVKARTAILQDYLSGEILFEKDADKSIYPASMTKIMTAIIAFDLIRSGDLSLDEK 88
Query: 80 ITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+S+NA S+ G ++++N LK +I+ S ND VA+AE + TE +F
Sbjct: 89 FLVSENAWRLSSAGYSSMFIMVGDEVSVENLLKGIIIASGNDACVALAEGIAGTEDEFAV 148
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
M +K +G++ T+F N+ G+ + +T RD+ ++S + +FP+ YF K
Sbjct: 149 MMTAKAKEIGMNNTNFANSSGINDTENLSTVRDIMLMSNYLIKEFPEEYKYFAEKEFTWN 208
Query: 197 -----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
N N + LGADG+KTG+ +++ +S + + LIAV G +N
Sbjct: 209 RTGGDPITQGNRNPLLYKSLGADGIKTGYLAVEKYSLASSVERNGRRLIAVGSGFNTKND 268
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R++ SA LL+ G N + D + I ++ T +
Sbjct: 269 RSRESAKLLTWGLTNFDLVEITKANTPIEDIDVWLGKKDTVKTYIKNDIYKTIPKAKKRL 328
Query: 308 TQMKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 329 LKVSLNYN-GPIQAPIKKDDILGKL 352
>gi|167572961|ref|ZP_02365835.1| family S11 unassigned peptidase [Burkholderia oklahomensis C6786]
Length = 328
Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats.
Identities = 76/275 (27%), Positives = 130/275 (47%), Gaps = 11/275 (4%)
Query: 2 RQFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
R+ L + + S S A + + ++D ++G +AE+ PASLTKL
Sbjct: 23 RRILGAMLVVATSIAANGAQASPAPQIQAVSWLVVDADSGKTLAEHNVSARREPASLTKL 82
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSA 116
MTAY+ LK+ + I+ + + G + + + ++ LIV SA
Sbjct: 83 MTAYLALDALKQGTLRWDEKVEIAADDIASVGNDEARMYLAPGQRVQVRDLVRGLIVASA 142
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A+ +A+ + + F + MN+ ++ LG+ +HF++ G+ HY+TA D++IL+
Sbjct: 143 NDAALVLAKRIGGSPAGFAKRMNDAAQRLGMRDSHFVSPSGITTPDHYSTAHDLSILARH 202
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG- 235
+ DFP++ + + E N N + DGMKTG T A+G+ +V +A +G
Sbjct: 203 LNQDFPEFYTFSSQQHFEYGKFAKTNKNRLLRADPTVDGMKTGHTNAAGWCMVVTAKRGV 262
Query: 236 -----DQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+IAV+LG R + LL GF
Sbjct: 263 AGSHAKHRVIAVLLGEPTEKQRLADARRLLDWGFA 297
>gi|116751475|ref|YP_848162.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
[Syntrophobacter fumaroxidans MPOB]
gi|116700539|gb|ABK19727.1| penicillin-binding protein 6. Serine peptidase. MEROPS family S11
[Syntrophobacter fumaroxidans MPOB]
Length = 462
Score = 187 bits (475), Expect = 1e-45, Method: Composition-based stats.
Identities = 85/259 (32%), Positives = 140/259 (54%), Gaps = 1/259 (0%)
Query: 8 IAMAM-LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+A+A+ + ++ L+ T ++D + G V+ E D PAS+TK++T Y+VF
Sbjct: 12 LALALSVVSVQSVLAAPFTVNARSAMVVDMSNGVVLYEKNADDLIAPASITKVLTLYIVF 71
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
++E + L + IS A++ S K G+ ++L+ +K + V S ND VA+AE
Sbjct: 72 DAIREGRIRLDDRVEISSRAAKTTGSRMGVKAGTRVSLEELIKGMAVVSGNDACVAVAEH 131
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ + FV+ MN ++ LG++++ FM +G+ G TTARD+A LS FP +
Sbjct: 132 ISGNVEAFVRKMNAKARELGMNSSRFMTPNGLPAKGQLTTARDIARLSIAYLRRFPDSLT 191
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ + N N + T G DG+KTGF CASG+NI A+A +G+ ++AV+LGA
Sbjct: 192 IHSMQAYSYGTSSHHNANRLLATCPGVDGLKTGFVCASGYNITATARRGNTRILAVVLGA 251
Query: 247 LDRNTRNKVSASLLSMGFY 265
R + + LL GF
Sbjct: 252 PTPGVRLRETTKLLEAGFA 270
>gi|239904889|ref|YP_002951627.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio
magneticus RS-1]
gi|239794752|dbj|BAH73741.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio
magneticus RS-1]
Length = 386
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 87/248 (35%), Positives = 138/248 (55%), Gaps = 1/248 (0%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ + L + NTG V+ E PD PASLTK++T Y++F +++ +
Sbjct: 110 ACAVGSPLTVKSAILWNMNTGEVLYEQNPDVQIPPASLTKVLTLYILFDAIRQGRLRPWD 169
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQH 137
I +S A+ SN + G + + + +K + V SAND +AIA++L + FV
Sbjct: 170 VIEVSPRAATQGGSNMRLRPGEQVKVTDLIKGIAVASANDACMAIADNLENGNAEAFVAL 229
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN+T+K LG++ + F N +G+ G TTARDM L+ FP+ + ++
Sbjct: 230 MNDTAKRLGMTNSVFFNPNGLPADGQVTTARDMLKLAAAYLEQFPKSLTIHSMQFFTHNN 289
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
++ N N +G + G DG+KTGF CASG+NIVA+A++GD LIAV+LG+ + R + +A
Sbjct: 290 RQRHNANSLLGRYEGVDGLKTGFVCASGYNIVATAMRGDTRLIAVVLGSRNPRVRERETA 349
Query: 258 SLLSMGFY 265
LL GF
Sbjct: 350 KLLDKGFK 357
>gi|269138268|ref|YP_003294968.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202]
gi|267983928|gb|ACY83757.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda EIB202]
gi|304558304|gb|ADM40968.1| D-alanyl-D-alanine carboxypeptidase [Edwardsiella tarda FL6-60]
Length = 387
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 92/326 (28%), Positives = 143/326 (43%), Gaps = 12/326 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
F + + L+D TG ++A PD NPASLTKLMT YVV L + + L
Sbjct: 22 MAFPLVPPHIDAASWVLMDAQTGQILAAGNPDARRNPASLTKLMTNYVVEQALDQGRIGL 81
Query: 77 TTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
++I +A S K G T+ + ++ +I+ S ND VA+++ +
Sbjct: 82 NDRVSIGDDAWATRNPLFKGSSLMFLKPGDRATVSDLIRGIIIDSGNDACVALSDYVSGD 141
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+ FV+ MN L L THF HG+ G Y++ARD+A+L+ I T Y H++
Sbjct: 142 QADFVRQMNADVSALHLQNTHFETVHGLDAPGQYSSARDLALLARAIITHEQPYYHFYAE 201
Query: 191 KGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVA-SAIQGDQSLIAVILGALD 248
K L G N N L DGMKTG T ++GFN+VA S Q LIAV++GA
Sbjct: 202 KSLSWNGVTQNNRNGLLWDQDLHVDGMKTGHTASAGFNLVATSVDARGQRLIAVVMGADS 261
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS----EEVCTTQKEII 304
R + + LL G N + QQ + ++ + + T +
Sbjct: 262 SRGREQQAKKLLLWGERNFETVQLAASDSAVTRQQVRYGQQQTVALGNPQNIYYTLPKGE 321
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLK 330
+ +++ + K ++
Sbjct: 322 LRDVKVEYTLSHDYLKAPLAKGEVVG 347
>gi|160942230|ref|ZP_02089539.1| hypothetical protein CLOBOL_07116 [Clostridium bolteae ATCC
BAA-613]
gi|158434787|gb|EDP12554.1| hypothetical protein CLOBOL_07116 [Clostridium bolteae ATCC
BAA-613]
Length = 453
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 88/333 (26%), Positives = 143/333 (42%), Gaps = 14/333 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ A P L++ +TG VI E D +PAS+TK+MT ++F L+ K
Sbjct: 80 AAPADQSQAAVQIAAPSAILMEASTGQVIYEKDADEKRSPASVTKVMTLILIFDALQSGK 139
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
LT + S +A S ++G T++ +K +++ S ND +VA+AE + +E +
Sbjct: 140 IQLTDEVVTSAHAKSMGGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYIAGSEDE 199
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
FV+ MN + +LG+S THF++ G+ HYTTARD+AI+S + +PQ +Y I
Sbjct: 200 FVRMMNERAASLGMSNTHFVDCCGLTESPDHYTTARDIAIMSRELINKYPQIHNYSTIWM 259
Query: 193 LEIKGKK--------YPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
I NTN + T G+KTG T + + + A+A + LIA
Sbjct: 260 ENITHVTKQGTKEFGLSNTNKLLKMATNFTVTGLKTGSTSIAKYCLSATAEKDGVRLIAA 319
Query: 243 ILGALDRNTRNKVSASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
I+ A D R + +LL+ G+ N D++ +
Sbjct: 320 IMAAPDFKARFADAQTLLNYGYANCKLYEDKEHLPLPQMPVTGGVEDEVGLTYEGTFSYL 379
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + K+ ES E
Sbjct: 380 SLKGEDLGAIEKKLVLLESVPAPVEPGQKAGVL 412
>gi|323705335|ref|ZP_08116910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535237|gb|EGB25013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 381
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 83/351 (23%), Positives = 143/351 (40%), Gaps = 25/351 (7%)
Query: 1 MRQFLVIIAMAML----SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ LV++ + +NI ++D +G ++ E AS
Sbjct: 1 MKKILVLVLIFTFLMTPTNIEAENLKPPQIAAKAAIVMDQKSGRILFEKNISEKLPMAST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MT + + L +T+SK A+ S+ G +++ N L L++ S
Sbjct: 61 TKIMTLLLALEY-----GNLNDIVTVSKKAASVGGSSIWLSPGEKISMINLLYGLMLNSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILS 174
ND A AIAE + + KFV+ MN +K +G T+F+ G+ HYTTA D+A+++
Sbjct: 116 NDAATAIAEHISGSVDKFVELMNKKAKEIGAYNTNFVTPSGLDIGIDNHYTTAYDLALIT 175
Query: 175 WRIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
++ ++ K I + N N + + GADG+KTGFT +G +
Sbjct: 176 RYAFNNYNKFAEIVSTKEKTIPWDGKEYDRYLRNKNKMLWQYEGADGVKTGFTNKAGRCL 235
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQN 284
VASA + Q LI+V+L + + + +L F N T K I+
Sbjct: 236 VASASRNGQRLISVVLNSG---PMWEDTQKILDYSFANYTPIKIISKGQMIKTISVVSGK 292
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + N ++ + K S + I K
Sbjct: 293 EKYLPLVYNSDFILPISKDEEINVKIDYSLPK-SVKAPIGIGEKMGVAIVK 342
>gi|114765840|ref|ZP_01444933.1| D-alanyl-D-alanine carboxypeptidase family protein [Pelagibaca
bermudensis HTCC2601]
gi|114541839|gb|EAU44876.1| D-alanyl-D-alanine carboxypeptidase family protein [Roseovarius sp.
HTCC2601]
Length = 486
Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats.
Identities = 94/260 (36%), Positives = 142/260 (54%), Gaps = 1/260 (0%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
++D +G V+ D P +PASLTK+MT Y+ F ++ + + T +TIS+N
Sbjct: 5 AAPYAAMVVDARSGEVLHSENADTPLHPASLTKMMTLYLAFEAVEHGELTMDTVVTISRN 64
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A+ PPS + G + L ++ VKSAND A AI E++ +E F + MN T+K +
Sbjct: 65 AAAEPPSKLGLRSGQKIKLRYLVRAAAVKSANDAATAIGEAISGSEAAFARRMNRTAKAM 124
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
G+S T F NA+G+ + GH +TARDM +L + D+PQY + F + NTN
Sbjct: 125 GMSRTTFKNANGLTETGHMSTARDMTLLGRHMIYDYPQYYNLFSRITTHAGMHEVYNTNR 184
Query: 206 AV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
G + GADG+KTG+T A+GFN+VASA +G + ++ + G +RN A L+ +GF
Sbjct: 185 RFLGAYKGADGIKTGYTRAAGFNLVASAERGSERVVTTVFGGRSTASRNAKVAELMDLGF 244
Query: 265 YNKTDRKKINYIIKDFYQQN 284
R + K Y N
Sbjct: 245 KRAKTRVALRAPGKPPYLGN 264
>gi|325519264|gb|EGC98711.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. TJI49]
Length = 354
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 83/320 (25%), Positives = 149/320 (46%), Gaps = 14/320 (4%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK--NASE 88
+ L+D + V+A D PASLTKLMTAY+VF L +KK + +T S+
Sbjct: 1 WVLVDATSNTVLASGNADERVEPASLTKLMTAYLVFEALDKKKISMEQIVTPSEAVRRVG 60
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S + +++ + + +I++S ND A+A+AE + +E +FV MN+ ++ LG+
Sbjct: 61 RDESRMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVTMMNDEAQRLGMK 120
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
THF + +G+ HYTTA D+A LS + DFPQY F K + + N N +
Sbjct: 121 GTHFADVNGMPDPNHYTTAGDLAKLSAHLIRDFPQYYGIFSEKEFKYNNIRQGNRNRLLW 180
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILGALDRNTRNKVSASLLSM 262
DG+KTG T A+G+ ++AS+ + G + L++V++G + R + S +L+
Sbjct: 181 LDPTVDGLKTGHTQAAGYCLIASSKRAIPGSDGQRRLVSVMMGEQKESDRTQDSMKMLNY 240
Query: 263 GFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDK 316
G+ + Y+ + + + V + ++
Sbjct: 241 GYSAFDAVRLFKGGQAISTPRLYKGKENTVQVGVKSDQWVTVPRGLGDKVKPEVDVNAPL 300
Query: 317 ESHFIDFEKITLLKNKITKK 336
+ + +++ +K K
Sbjct: 301 IAPLAEGQQVGTVKIVADGK 320
>gi|261212007|ref|ZP_05926293.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
gi|260838615|gb|EEX65266.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
Length = 347
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 83/310 (26%), Positives = 141/310 (45%), Gaps = 9/310 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYP 90
+D ++G V+AE + +PASLTK+MT+YV+ +K L + ISKNA
Sbjct: 1 MDYHSGKVLAEKEMNTKLSPASLTKMMTSYVIGQEIKRGNISLNDDVVISKNAWAKNFPD 60
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
S + G+T+ + + + +I++S ND VA+AE + +E FV MN + +LG+ +
Sbjct: 61 SSKMFVEVGTTVKVSDLNRGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLGMKNS 120
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGT 209
HF NAHG+ Y+T D+A+L + D P + + G N N
Sbjct: 121 HFTNAHGLDNPNLYSTPYDLALLGQALIRDVPDEYAIYSEQKFTYNGITQYNRNGLLWDK 180
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ DG+KTG T +G+N+V+SA +G+ L+AV++G N R S LL GF
Sbjct: 181 SMNVDGIKTGHTSGAGYNLVSSATEGNMRLVAVVMGTDSENARKAESKKLLGYGFRFFET 240
Query: 270 RKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ + + + + ++ T + +KE +K
Sbjct: 241 VAPHKAGETFVNEAIWMGDKNTVALGVDKDTYVTLPRGQAKDLTASFVLEKE-LKAPLKK 299
Query: 326 ITLLKNKITK 335
++ +
Sbjct: 300 GDVVGTLYYQ 309
>gi|238918925|ref|YP_002932439.1| D-alanyl-D-alanine carboxypeptidase DacD [Edwardsiella ictaluri
93-146]
gi|238868493|gb|ACR68204.1| D-alanyl-D-alanine carboxypeptidase DacD [Edwardsiella ictaluri
93-146]
Length = 387
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 92/326 (28%), Positives = 142/326 (43%), Gaps = 12/326 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
F + + L+D TG ++A PD NPASLTKLMT YVV L + + L
Sbjct: 22 MAFPLVPPHIDAASWVLMDAQTGQILAAGNPDARRNPASLTKLMTNYVVERALDQGRIGL 81
Query: 77 TTPITISKNASEYP------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
++I +A S K G T+ + ++ +I+ S ND VA+++ +
Sbjct: 82 NDRVSIGDDAWATRNPLFKGSSLMFLKPGDHATVSDLIRGIIIDSGNDACVALSDYVSGD 141
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+ FV+ MN L L THF HG+ G Y++ARD+A+L+ I T Y H++
Sbjct: 142 QADFVRQMNAYVNALHLQNTHFETVHGLDAPGQYSSARDLALLARAIITHEQPYYHFYAE 201
Query: 191 KGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVA-SAIQGDQSLIAVILGALD 248
K L G N N L DGMKTG T ++GFN+VA S Q LIAV++GA
Sbjct: 202 KSLSWNGVTQNNRNGLLWDQDLHVDGMKTGHTASAGFNLVATSVDARGQRLIAVVMGADS 261
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS----EEVCTTQKEII 304
R + LL G N + QQ + ++ + + T +
Sbjct: 262 SRGREVQAKKLLLWGDRNFETVQLAASDKAVTCQQVRYGQQQTVALGSPQNIYYTLPKGE 321
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLK 330
+ +++ + K ++
Sbjct: 322 LRDVKVEYTLSHDYLKAPLAKGEVVG 347
>gi|222087386|ref|YP_002545923.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
radiobacter K84]
gi|221724834|gb|ACM27990.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
radiobacter K84]
Length = 388
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 122/318 (38%), Positives = 186/318 (58%), Gaps = 4/318 (1%)
Query: 3 QFLVIIAMAMLSNIFP--FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ + + ++ FLS AE + L+D NTG V+ W PASLTKLM
Sbjct: 7 RLYAALRLVPMAAAASMLFLSTAEVADANPHVLVDANTGRVLDHQEAFSKWYPASLTKLM 66
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F ++ + L TP+ +SK AS P + FK G MTLDNALK+++VKSAND+A
Sbjct: 67 TAYVTFRAIQSGQVSLDTPVVMSKLASAQPAAKMYFKPGQKMTLDNALKMMLVKSANDLA 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A++E++ +++ FV MN + LG+ THF+N +G+ G YTTARD+A+LS ++ +
Sbjct: 127 MAVSETIGGSQQGFVARMNAEAARLGMLDTHFINPNGLPGQGQYTTARDLAVLSVALRRE 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQY YF ++G K+ PN N +G + GADGMKTGF CA+GFN +ASA + ++LI
Sbjct: 187 FPQYAGYFSLEGFTNGVKQVPNINMLIGRYDGADGMKTGFICAAGFNQIASATRNGRTLI 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
+V+LG R SA+ L GF N+ K ++ + +V +++ E+C+ +
Sbjct: 247 SVVLGTDSLAARADDSANFLEKGFQNQFSGKDTLANLRPYGPGQD--QVADLTAEICSAK 304
Query: 301 KEIINYNTQMKEAKDKES 318
I T+ + + K +
Sbjct: 305 GAKIRSETRDEAGRMKVT 322
>gi|163752391|ref|ZP_02159585.1| D-alanyl-D-alanine carboxypeptidase [Shewanella benthica KT99]
gi|161327728|gb|EDP98916.1| D-alanyl-D-alanine carboxypeptidase [Shewanella benthica KT99]
Length = 348
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 88/313 (28%), Positives = 142/313 (45%), Gaps = 10/313 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYP 90
+D NTG +IAE NPASLTK+MT+YV+ +K +TISK A
Sbjct: 1 MDYNTGQIIAEENAYESLNPASLTKMMTSYVIGHEIKVGNISPEDEVTISKKAWSKNFPD 60
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
S + G +T+D+ +I++S ND VA+AE + TE FV MN+ + LG+ +
Sbjct: 61 SSKMFIEVGKQVTVDDLNHGIIIQSGNDACVAMAEHIAGTEDGFVDLMNSWAIQLGMKDS 120
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGT 209
F N+HG+ H +TA DMA+L + D P ++ K G K N N
Sbjct: 121 FFENSHGLDAKNHKSTAYDMALLGAALIRDVPDEYAVYKQKSFTYNGIKQYNRNGLLWDK 180
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ DG+KTG T +G+N+V SA + LI+V++G N R S LL+ GF
Sbjct: 181 SMNVDGIKTGHTSGAGYNLVTSATKDGMRLISVVMGTKSENARKAESKKLLNYGFRFFET 240
Query: 270 RKKINYII----KDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + + + ++ + + + + N + K+ +
Sbjct: 241 ITPYKAGDSFVSQQIWFGDKESVDLGVTTDTPITINRGQAKNLRANFELTKELTAPLAKG 300
Query: 324 EKITLLKNKITKK 336
E + + ++ K
Sbjct: 301 ETVGRIYFQLNGK 313
>gi|158423796|ref|YP_001525088.1| D-alanyl-D-alanine carboxypeptidase [Azorhizobium caulinodans ORS
571]
gi|158330685|dbj|BAF88170.1| D-alanyl-D-alanine carboxypeptidase [Azorhizobium caulinodans ORS
571]
Length = 426
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 88/340 (25%), Positives = 147/340 (43%), Gaps = 8/340 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L+ + A+L A +P TL+D +G ++ E P + K+MTA V
Sbjct: 37 LLTVVAALLPLQAARAQTAFQTAVPEATLVDFASGTILFEKNAQGRVAPGGIVKIMTAAV 96
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSN-----STFKKGSTMTLDNALKLLIVKSANDI 119
+F ++ K L TP +S+NA S + + + L+ +V S ND
Sbjct: 97 IFDQIRAGKITLDTPFYVSENAWRRGGGPSGGAAMFVPVKSQVRVGDLLQGALVVSGNDA 156
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+A+AE L TE +F Q MN + LG+S + F NA G +T ARDMA+L+ I
Sbjct: 157 AIALAEGLSGTESEFAQRMNAKAAELGMSGSQFRNATGFADPDQFTNARDMAVLARSIIR 216
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ P+ F + +E K N N + +GADG+ + +G+++V SA+QG+Q L
Sbjct: 217 NDPELYKIFAVPDIEWSKIKQRNRNTLLNAGIGADGLHMSWVKDAGYHLVGSAVQGNQRL 276
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEEV 296
I V++GA R + + LL GF++ + + + VP ++
Sbjct: 277 IVVVMGAKTEKERLEEARRLLEWGFHSFQYKLLFAGDTEVGRASIWGGAVGSVPLVTGSE 336
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + + K K T + +
Sbjct: 337 LSLLLPRNSQEKLVARVSYKGPLRAPVAKGTEVGRLELTR 376
>gi|323701270|ref|ZP_08112945.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
nigrificans DSM 574]
gi|323533872|gb|EGB23736.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
nigrificans DSM 574]
Length = 414
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 89/350 (25%), Positives = 143/350 (40%), Gaps = 22/350 (6%)
Query: 2 RQFLVIIAMAMLS--NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++ L +I + L +I + A L+D TG V+ PAS TK
Sbjct: 6 KKILSVIVIVWLCLGSIPYAWAGAPEISGEAAVLIDAGTGQVLYGKDEHKRMYPASTTKT 65
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+TA V K LT +TI NA + ++ +G + L + L L++ SAND
Sbjct: 66 LTALVALEHAK-----LTDLVTIGPNALQAGGTSIGLTEGEKIPLKDLLYALMLNSANDA 120
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VAIAE + + +KF N +K +G THF N HG+ HY+TA D+A+++ +
Sbjct: 121 GVAIAEHISGSVEKFAALSNQEAKKIGAKDTHFTNPHGMPDKNHYSTAYDLALIARQAMQ 180
Query: 180 DFPQYM-----HYFQIKGLEIKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVA 230
+ HY + K N N + + G G+KTG+T +G ++A
Sbjct: 181 NQEFRRIVSTVHYQVSRADPNAQKYLFNHNKLLWSKIYGYQGTTGVKTGYTVEAGQCVIA 240
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLS 286
SA + + LIAV+L + N + LL GF N R+ +
Sbjct: 241 SAQRDGRELIAVVLHSDGSNI-WSDATKLLDYGFTNFHSRQVVKGGQVMANIPVKYGKSP 299
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
N S + T + Q+ KE + +L + + +
Sbjct: 300 NVDLVASRDFYYTFPLEGADDLQISVQPQKE-VKAPVTRGQVLGSILLSQ 348
>gi|254452232|ref|ZP_05065669.1| D-alanyl-D-alanine carboxypeptidase family protein [Octadecabacter
antarcticus 238]
gi|198266638|gb|EDY90908.1| D-alanyl-D-alanine carboxypeptidase family protein [Octadecabacter
antarcticus 238]
Length = 450
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 97/276 (35%), Positives = 140/276 (50%), Gaps = 1/276 (0%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ IA + ++D TG ++ D +PASLTK+MT Y+ F ++ +
Sbjct: 1 MAALAPIAGNSAPYAAMVMDARTGEILHSRNADTQLHPASLTKMMTLYIAFQAIERGEIS 60
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L ITI+ A+ PPS G + ++ VKSAND A AI +L E F
Sbjct: 61 LDDMITITPVAANEPPSKLGLVAGQRIQFRYLVRASGVKSANDAATAIGIALEGNEAAFA 120
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
+ M T++ +G+S T F NAHG+ + GH +TARDM +L + DFPQY + F +
Sbjct: 121 RRMTATARAMGMSRTTFRNAHGLTESGHLSTARDMTVLGRHMIYDFPQYYNIFSRLTTDA 180
Query: 196 KGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
++ NTN + GADG+KTG+T A+GFN+VASA +G + +IA + G RN
Sbjct: 181 GVRQVANTNRRFLSAYRGADGIKTGYTRAAGFNLVASAERGQERIIATMFGGSSTAQRNA 240
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
A LL MGF IN Q + S + P
Sbjct: 241 RVAELLDMGFARAPTTANINRPSPVPAQGSGSPDAP 276
>gi|331089686|ref|ZP_08338584.1| hypothetical protein HMPREF1025_02167 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330404521|gb|EGG84064.1| hypothetical protein HMPREF1025_02167 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 434
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 90/321 (28%), Positives = 146/321 (45%), Gaps = 11/321 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P L++ +TG V+ E D PAS+TK+MT ++F ++ KK L + +S+
Sbjct: 74 QIGAPSALLMEASTGTVLFEQDADTKRPPASVTKIMTMLLIFDAVESKKISLEDKVPVSE 133
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ S + G T T+D LK + + SAND VA+AE + +E+ FVQ MN +K
Sbjct: 134 FAASMGGSQVFLETGETQTVDTMLKCISIASANDACVAMAEYISGSEEAFVQEMNKRAKA 193
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199
LG+ T+F+N +G+ GH TTARD+A++S + T +PQ Y I +
Sbjct: 194 LGMHNTNFVNCNGLDAQGHVTTARDIALMSRELITKYPQIHEYAMTWMENITHETKKGTS 253
Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
NTN V + A G+KTG T + F + A+ + D LIAV++ A R +
Sbjct: 254 EFGLTNTNKLVRQYEYATGLKTGSTGEAKFCVSATGKKDDVELIAVVMAADTSKERFADA 313
Query: 257 ASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
+++ GF +D K + N E+ + + K
Sbjct: 314 VKMMNYGFGKCQVYSDEKPMKTKYAVVKNGVEENIEVERGEKFTYLDVKGKDMKKIKKIE 373
Query: 314 KDKESHFIDFEKITLLKNKIT 334
K + K ++ + +
Sbjct: 374 KINKKILAPVRKGDVVGSIVY 394
>gi|229089145|ref|ZP_04220429.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-42]
gi|228694186|gb|EEL47865.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-42]
Length = 444
Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats.
Identities = 77/375 (20%), Positives = 144/375 (38%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + +S+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKISQDRSLSNVPLRNGESYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+AE++ E FV+ MNN SK LGL F+N+ G+
Sbjct: 132 AMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKELGLKNYKFVNSTGLTNKDLKGRHPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA---- 206
+ ARD+AIL+ R+ DFP+ + +I + N NW
Sbjct: 192 GTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKISKKTFREGTTDRIDMINWNWMLPGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ G DG+KTG T +G + + I+V++ R+ R + L GF N
Sbjct: 252 SKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISVVINTKSRDARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESH 319
++ Q+ + E + V + + + + +
Sbjct: 312 FEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAVSLPVAKGSKDVYKTELKEANKGQ 371
Query: 320 FIDFEKITLLKNKIT 334
+K +L +
Sbjct: 372 EAPIKKGAVLGQMVI 386
>gi|89074850|ref|ZP_01161304.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34]
gi|89049425|gb|EAR54987.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium sp. SKA34]
Length = 459
Score = 187 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 86/318 (27%), Positives = 138/318 (43%), Gaps = 6/318 (1%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ L+D NTG ++A N + PAS TKLM Y+V L + L + + +
Sbjct: 98 PPNLNARAFILIDANTGRIVASNNANMRMAPASTTKLMLMYIVEQKLADGVISLDSKVLV 157
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ A S K GS +++ + ++ +IV+S ND AV +A + ++ FV MN T+
Sbjct: 158 PEVAWRTGGSRMFLKPGSYVSVKDLIQGVIVESGNDAAVTLANYVAGSQSSFVSMMNATA 217
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
LG+ THF G+ H++TA D+ +L I D+PQY H+F K E + PN
Sbjct: 218 VKLGMHNTHFTTVMGLPAPAHFSTAYDLGLLGQHIMNDYPQYFHFFSQKYFEYNHIRQPN 277
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQ--GDQSLIAVILGALDRNTRNKVSASLL 260
N + T+ A GMKTG T A+G+++V+SA L+AV+LG N S L
Sbjct: 278 FNRLLFTYQYATGMKTGSTEAAGYSLVSSAKMPDNPMKLVAVVLGTQSLNDVAAQSKGLF 337
Query: 261 SMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
+ GF K + N + + + ++ + +
Sbjct: 338 NYGFRFFKQDTLYAADSKLSEQHVWGGQQDNVSLGLEKPLTLVLPSSVDEKDLLTNLQFD 397
Query: 317 ESHFIDFEKITLLKNKIT 334
+K L
Sbjct: 398 HDIKAPVDKGEKLGEMTV 415
>gi|118475787|ref|YP_892938.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str.
Al Hakam]
gi|229182408|ref|ZP_04309661.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BGSC 6E1]
gi|118415012|gb|ABK83431.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
[Bacillus thuringiensis str. Al Hakam]
gi|228601054|gb|EEK58621.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BGSC 6E1]
Length = 444
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 77/375 (20%), Positives = 144/375 (38%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + +S+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKISQDRSLSNVPLRNGESYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+AE++ E FV+ MNN SK LGL F+N+ G+
Sbjct: 132 AMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKELGLKNYKFVNSTGLTNKDLKGQHPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA---- 206
+ ARD+AIL+ R+ DFP+ + +I + N NW
Sbjct: 192 GTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKISKKTFREGTTDRIDMINWNWMLPGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ G DG+KTG T +G + + I+V++ R+ R + L GF N
Sbjct: 252 SKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISVVINTKSRDARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESH 319
++ Q+ + E + V + + + + +
Sbjct: 312 FEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAVSLPVAKGSKDVYKTELKEANKGQ 371
Query: 320 FIDFEKITLLKNKIT 334
+K +L +
Sbjct: 372 EAPIKKGAVLGQMVI 386
>gi|152973863|ref|YP_001373380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152022615|gb|ABS20385.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
391-98]
Length = 439
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 74/364 (20%), Positives = 138/364 (37%), Gaps = 34/364 (9%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L A S++ S A + L++ ++G ++ + D AS+TK+M+ Y+
Sbjct: 18 LFFSAFVTYSSVSAETSSALNIEAGAAILVEADSGKILYQKNADELLAIASMTKMMSEYL 77
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIA 120
V + K I +S+ A + S + T+ + + + SAN
Sbjct: 78 VHKAVDTGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGAT 137
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTT 166
+A+AE++ E FV+ MN+ +K GL F+N+ G+ + +
Sbjct: 138 IALAEAVAGKEADFVKMMNDQAKEFGLKNYKFVNSTGLTNKDLKGQHPEGTTPDEENKMS 197
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMK 217
ARD+AIL+ + DFP+ + +I + K N NW + + G DG+K
Sbjct: 198 ARDVAILAQHLIQDFPKVLDTAKIPKKVFQEGGKYPVKMDNWNWMLKGLIKQYEGVDGLK 257
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
TG T +G +A + LI+V++ R + L GF N +K
Sbjct: 258 TGSTPEAGDCFTGTAERNGMRLISVVIKTNSHTARFDETKKLFDYGFTNFDVKKVYPKGS 317
Query: 278 KDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + E + + + + + + + +K T L
Sbjct: 318 SVKGYETVRVENAKDKDVAVETKQAITLPMPKGSKDVYKTEFKEVGKEKEAPIKKGTTLG 377
Query: 331 NKIT 334
+
Sbjct: 378 QMVV 381
>gi|323704241|ref|ZP_08115820.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323536307|gb|EGB26079.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 457
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 79/351 (22%), Positives = 146/351 (41%), Gaps = 28/351 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ + II + + F P L+D TG V+ + + PAS
Sbjct: 1 MKKIVSIITVIIFLINFIPKVYGMENPPQIVGPTAVLMDFTTGQVLYDKNMNQRMYPAST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK++TA + K L +T++ + ++ G +TL+ L ++++SA
Sbjct: 61 TKILTAIIAIEKGK-----LNDVVTVNDDVKNIDGNSIYLVPGEKLTLEQLLYAMLLESA 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A+A+A+ + + + F MN +K +G +HF+N +G+ HY+T DMA+++
Sbjct: 116 NDAAIAVADHIGGSIQGFANLMNEKAKEIGAKDSHFVNPNGLPNTEHYSTPYDMALIARY 175
Query: 177 IKTD--------FPQYMHYFQIKGLEIKGKKYPNT--NWAVGTFLGADGMKTGFTCASGF 226
+ Y K + + N + GADG+KTG+T A+
Sbjct: 176 AMRNATFRKIVSTIHYQIPPTNKFDKPRDLWISNRLIKPTSFHYDGADGVKTGYTIAANQ 235
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ--QN 284
V SA + LI+VI+G N + LL+ GF N + Y
Sbjct: 236 VFVGSATRNGHRLISVIMGDEGTNI-WTDTIKLLNYGFNNFDLVNPLEQNSIVTYVDIGK 294
Query: 285 LSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++P I+++ + + + + + K+ +K T L +
Sbjct: 295 VKFKLPLIAKDSFYYVVPKGQENSIKSSISVDKN---INAPVKKGTTLGSI 342
>gi|304316798|ref|YP_003851943.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778300|gb|ADL68859.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 384
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 77/337 (22%), Positives = 142/337 (42%), Gaps = 22/337 (6%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ ++D +G ++ E + AS TK+MT + +
Sbjct: 18 INVNAENIEPPQIAAKAAIVMDQKSGRILYEKNINEKLPMASTTKIMTLLLALEY----- 72
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
L +T+SK A+ S+ G ++L + L L++ S ND A AIAE + + +K
Sbjct: 73 GNLNDIVTVSKRAASVGGSSIWLAPGEKLSLIDLLYGLMLNSGNDAATAIAEHIGGSVEK 132
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
F + MN +K++G +T+F+ G+ + HYTTA D+A+++ ++ ++ K
Sbjct: 133 FAEMMNKKAKDIGAYSTNFVTPSGLDIGINNHYTTAYDLALITRYAFNNYSKFAEIVSTK 192
Query: 192 GLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
I + N N + + G DG+KTGFT +G +VASA + LI+V+L
Sbjct: 193 EKTIPWSGRDYDRYLRNKNKMLWQYEGGDGVKTGFTNKAGRCLVASATRDGHRLISVVLN 252
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTT-- 299
+ + S +L F K ++ +++
Sbjct: 253 SG---PMWEDSQKILDYSFEKYKPLKIVSKCQVLKTISVINGKEKYLPLQYNDDFTLPVS 309
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++EI+N + K ++ EK+ + K + K
Sbjct: 310 KEEILNIKVEYNIPKSIKAPIGIGEKVGIAKVLLNDK 346
>gi|196047683|ref|ZP_03114887.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
03BB108]
gi|225862066|ref|YP_002747444.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
03BB102]
gi|196021468|gb|EDX60171.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
03BB108]
gi|225789232|gb|ACO29449.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
03BB102]
Length = 439
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 77/375 (20%), Positives = 144/375 (38%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + +S+ A + S + T+ +
Sbjct: 67 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAYKISQDRSLSNVPLRNGESYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+AE++ E FV+ MNN SK LGL F+N+ G+
Sbjct: 127 AMAIYSANGATIALAEAIGGKEVDFVKLMNNKSKELGLKNYKFVNSTGLTNKDLKGQHPE 186
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA---- 206
+ ARD+AIL+ R+ DFP+ + +I + N NW
Sbjct: 187 GTNPDEENKMAARDVAILAQRLIQDFPKTLDTAKISKKTFREGTTDRIDMINWNWMLPGL 246
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ G DG+KTG T +G + + I+V++ R+ R + L GF N
Sbjct: 247 SKAYDGVDGLKTGSTPEAGECFTGTIEKDGMRFISVVINTKSRDARFDETKKLYDYGFAN 306
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESH 319
++ Q+ + E + V + + + + +
Sbjct: 307 FEMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAVSLPVAKGSKDVYKTELKEANKGQ 366
Query: 320 FIDFEKITLLKNKIT 334
+K +L +
Sbjct: 367 EAPIKKGAVLGQMVI 381
>gi|302874917|ref|YP_003843550.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium cellulovorans
743B]
gi|307690464|ref|ZP_07632910.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cellulovorans
743B]
gi|302577774|gb|ADL51786.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium cellulovorans
743B]
Length = 403
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 86/352 (24%), Positives = 155/352 (44%), Gaps = 26/352 (7%)
Query: 4 FLVIIAMAMLSNIFPFLS----------------IAETNKLPYYTLLDTNTGHVIAENYP 47
FLV+I++ L + A + L++ NTG V+ E
Sbjct: 12 FLVLISIFQLFVPKAAIVVFAEEAAVETSAAKDTTAINVEANSALLMEPNTGKVLYEKNI 71
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ PAS+TK+MT + + + LT IT+S+NA + S+ + G T++
Sbjct: 72 HDKYAPASVTKIMTMLLAMEAIDSGRIKLTDTITVSENAKKMGGSSMILETGEVRTVEEI 131
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+K + + S ND AVA+AE + +E+ FV MN + LG+ T F N G+ GH +TA
Sbjct: 132 IKGIAIASGNDAAVAMAEYIGGSEENFVVMMNKKCEELGMKNTTFKNCTGLSADGHLSTA 191
Query: 168 RDMAILSWRIKTDFPQYM----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
D++++S + + I + N N V F G DG+KTGFT
Sbjct: 192 YDISLMSRELLKHPTILKYSSIYMETISEGRKTPIELVNHNKLVRFFKGCDGLKTGFTSE 251
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD---- 279
+ + I A+A + +++VI+GA RN+ ++ L++ GF + + +
Sbjct: 252 AKYCISATATRDGVRMLSVIMGAPTFKVRNRDASMLMNYGFSKFESKVIVKKDDEVDKVS 311
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
F ++ + +EV ++ N T K + + + ++ ++
Sbjct: 312 FDKKGDKFLMAKSCDEVRVVVEKGGNIETTKKIILN--DNLKEIKQGQMIGK 361
>gi|153814787|ref|ZP_01967455.1| hypothetical protein RUMTOR_01002 [Ruminococcus torques ATCC 27756]
gi|317500310|ref|ZP_07958535.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
8_1_57FAA]
gi|145847818|gb|EDK24736.1| hypothetical protein RUMTOR_01002 [Ruminococcus torques ATCC 27756]
gi|316898251|gb|EFV20297.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
8_1_57FAA]
Length = 415
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 90/321 (28%), Positives = 146/321 (45%), Gaps = 11/321 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P L++ +TG V+ E D PAS+TK+MT ++F ++ KK L + +S+
Sbjct: 55 QIGAPSALLMEASTGTVLFEQDADTKRPPASVTKIMTMLLIFDAVESKKISLEDKVPVSE 114
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ S + G T T+D LK + + SAND VA+AE + +E+ FVQ MN +K
Sbjct: 115 FAASMGGSQVFLETGETQTVDTMLKCISIASANDACVAMAEYISGSEEAFVQEMNKRAKA 174
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199
LG+ T+F+N +G+ GH TTARD+A++S + T +PQ Y I +
Sbjct: 175 LGMHNTNFVNCNGLDAQGHVTTARDIALMSRELITKYPQIHEYAMTWMENITHETKKGTS 234
Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
NTN V + A G+KTG T + F + A+ + D LIAV++ A R +
Sbjct: 235 EFGLTNTNKLVRQYEYATGLKTGSTGEAKFCVSATGKKDDVELIAVVMAADTSKERFADA 294
Query: 257 ASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
+++ GF +D K + N E+ + + K
Sbjct: 295 VKMMNYGFGKCQVYSDEKPMKTKYAVVKNGVEENIEVERGEKFTYLDVKGKDMKKIKKIE 354
Query: 314 KDKESHFIDFEKITLLKNKIT 334
K + K ++ + +
Sbjct: 355 KINKKILAPVRKGDVVGSIVY 375
>gi|182416858|ref|ZP_02948244.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
gi|237669065|ref|ZP_04529049.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182379320|gb|EDT76819.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
gi|237657413|gb|EEP54969.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 461
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 82/319 (25%), Positives = 141/319 (44%), Gaps = 10/319 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + + L++ TG +I E D + PAS+TK+MT + + K L +
Sbjct: 96 AESNEIEARSALLMEPCTGKIIYEKNADEKFAPASVTKIMTMLLTIEAVDSGKIALDDKV 155
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
T S+NA + S G T++ LK + + S ND AVA+AE L TE FV MN
Sbjct: 156 TCSENAKKMGGSTMLLDTGEIRTVEELLKGVAIASGNDAAVALAEYLGGTENDFVGMMNK 215
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----PQYMHYFQIKGLEIK 196
++ LG++ T F N +G+ GH +TA D+A +S + + I
Sbjct: 216 RAEELGMTNTTFKNCNGLPADGHLSTANDIAKMSKELLKHPTILKYTGTYMDTITEGRKS 275
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ N N V F G DG+KTGFT + + I A+A + +++VI+GA RN+ +
Sbjct: 276 PIELVNHNKLVRFFDGCDGLKTGFTNEAKYCISATATRNGVRMLSVIMGAPTYKIRNRDA 335
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQ----QNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
+ LL+ GF +K + + Q + +++ + + K
Sbjct: 336 SILLNYGFSKYEGKKIFSKDEEVDKVYMDEQTDRYFMAKAQDDLTAVLPKGCKDEVEKKV 395
Query: 313 AKDKESHFIDFEKITLLKN 331
D ++++ ++
Sbjct: 396 VID--ELQKEYKEGDVVGK 412
>gi|310815390|ref|YP_003963354.1| Probable penicillin-binding protein [Ketogulonicigenium vulgare
Y25]
gi|308754125|gb|ADO42054.1| Probable penicillin-binding protein [Ketogulonicigenium vulgare
Y25]
Length = 314
Score = 187 bits (473), Expect = 3e-45, Method: Composition-based stats.
Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 5/279 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ ++ + + + + A ++D TG V+ D +PASLTK+MT
Sbjct: 9 RLGLLAFIILCAAMMSHAFAAP----YAALVMDARTGQVLDSENADTRLHPASLTKMMTL 64
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y+ F ++ + L + +T+S NA+ PPS + G + L ++ +KSAND A A
Sbjct: 65 YIAFQAIERGEVSLNSQVTVSANAAAQPPSRLGLRAGQRIELQYLIRAAAIKSANDAATA 124
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
I + +E+ F MN T++ +G++ THF++ +G+ +GHY+TARDM IL + DFP
Sbjct: 125 IGVGISGSEEAFAARMNATARAMGMNNTHFISMNGLTTNGHYSTARDMTILGRHLIYDFP 184
Query: 183 QYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
QY + F + + TN + + GADG+KTG+T A+G+N+ ASA +G+ +IA
Sbjct: 185 QYYNLFSRRSADAGIATVRTTNSRLLDNYQGADGIKTGYTQAAGYNLTASAERGNVRIIA 244
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
+ GA R+ L+ GF N ++
Sbjct: 245 TVFGATSNADRHTRITRLMDRGFANAPRNARLRPPEAPP 283
>gi|89069769|ref|ZP_01157105.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola
granulosus HTCC2516]
gi|89044715|gb|EAR50826.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola
granulosus HTCC2516]
Length = 448
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 88/282 (31%), Positives = 145/282 (51%), Gaps = 1/282 (0%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ +A ++D TG V +PASLTK+MT Y+ F ++ +
Sbjct: 3 LAALAPLASRAAPYAAMVMDARTGQVFHAENATTRLHPASLTKMMTLYIAFEAVERGEIS 62
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L T +TI + A+ PPS G + ++ VKSAND A AIA ++ +++ F
Sbjct: 63 LDTVVTIPRQAAAEPPSELGLVTGQQIRFRYLIRAAAVKSANDAATAIAFAISGSQEAFA 122
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
MN T++ +G+++T+F+NAHG+ +GH +TA DM IL + D+PQY + F + +
Sbjct: 123 ARMNRTARAMGMNSTNFINAHGLTANGHMSTAADMTILGRHMIYDWPQYYNLFSRRTTDA 182
Query: 196 KGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
++ NTN + GADG+KTG+T A+G N+VASA +G + +I + GA RN+
Sbjct: 183 GLREVSNTNRRFLDAYAGADGIKTGYTNAAGSNLVASAQRGSERIIVTVFGAPSSAVRNQ 242
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296
L+ +GF + + + + Y N + S +
Sbjct: 243 RVMELMDLGFSRAPSQVAVAALQRPPYLGNQGLPIGGGSRTI 284
>gi|134298966|ref|YP_001112462.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
MI-1]
gi|134051666|gb|ABO49637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
MI-1]
Length = 403
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 75/322 (23%), Positives = 131/322 (40%), Gaps = 4/322 (1%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
S LLD ++G V+ + AS+TKLMT ++ +++ ++
Sbjct: 46 SSSAQLETTAETAVLLDYSSGQVLYDKDMHVARPMASVTKLMTMLLICEAESQERIKMSD 105
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ S++A S + G MT L + SAND +VA+AE + +++ FV M
Sbjct: 106 KVVASEHACSMGGSQIFLEPGEEMTAKEMLISIATGSANDASVAMAEFIAGSQEAFVSMM 165
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-PQYMHYFQIKGLEIKG 197
N +K +GL THF N G+ HYT+A DMA + + + L
Sbjct: 166 NEKAKKMGLKNTHFSNPTGLPIENHYTSAYDMAQVLRECLRYPLFREVSSIYEYDLRGGD 225
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
K NTN + + GAD KTG+T + + + ASA + L++V+LG T + +
Sbjct: 226 FKLWNTNKLLKWYAGADAGKTGWTNEASYCLAASAKRDSLRLVSVVLGCPMPRTHFQETI 285
Query: 258 SLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
+ + GF + ++ + +V I+++ T
Sbjct: 286 KIFNYGFARYKAVDMAEAGQVVKEIKVEKGMMEKVKVITKDPVGLVVPKGQEKTVKGTIN 345
Query: 315 DKESHFIDFEKITLLKNKITKK 336
E +K ++ + K
Sbjct: 346 LPEKVVAPIKKGQIIGQYVVSK 367
>gi|317496786|ref|ZP_07955116.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
5_1_63FAA]
gi|316895798|gb|EFV17950.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
5_1_63FAA]
Length = 399
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 88/359 (24%), Positives = 156/359 (43%), Gaps = 23/359 (6%)
Query: 1 MRQFLVIIAMAMLSN-------------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYP 47
M+++ VI+ +A + + +++ + ++
Sbjct: 1 MQKWKVILLVAAILVQSFYCPVMAREARFLETAAPVLDLSAKSAIVMEQESKEILFAKDK 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D PAS+TK+M+ ++F LK+ K LT +T+S++A+ S + G +
Sbjct: 61 DKELAPASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGSQVFLETGEKQQVQTL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+K +++ SAND VA+AE +C +E+ FV MN ++ LG+ T F NA G+ GH T+A
Sbjct: 121 IKCVVISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTFQNACGLDTKGHVTSA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEI--------KGKKYPNTNWAVGTFLGADGMKTG 219
D+A+++ + +P+ Y +I I K NTN + + G GMKTG
Sbjct: 181 YDIALMTRELAQRYPEVFKYTKIWMDTIIHKTKKGEKEFGLSNTNKLIRQYHGCTGMKTG 240
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR--KKINYII 277
T +GF + A+A + +IAV++G R K + +LL GF N + I
Sbjct: 241 STGKAGFCLSATATRNKIHMIAVVMGCESSKARIKDARTLLDYGFSNCQRIHSETTRKEI 300
Query: 278 KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + E+V +I ++ + +S +K + K
Sbjct: 301 GRIPVQKGQRSEVSCQEKVTADLIDIKTQKGKIVKKIKIDSVKAPVKKGQKIGEIQYSK 359
>gi|126726756|ref|ZP_01742596.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacterales
bacterium HTCC2150]
gi|126704085|gb|EBA03178.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacterales
bacterium HTCC2150]
Length = 374
Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats.
Identities = 77/327 (23%), Positives = 137/327 (41%), Gaps = 6/327 (1%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P L+ ++D ++G V+ D P PAS++KLMT ++F L + +
Sbjct: 3 AAPLLAQNFATPARSAFVIDVSSGTVLLSKDADIPLPPASMSKLMTLNMLFEALVDGRVS 62
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L+ +S+ A + S+ K T + ++ +IV+S ND V +AE L E++F
Sbjct: 63 LSDTWRVSQRAQDMGGSSMYLDKRDRPTTEELIQGIIVQSGNDACVVVAEGLAGGEEEFA 122
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
Q M +++LG++ + F NA G + D+ L+ R+ T+FPQ+ YF K
Sbjct: 123 QLMTERARSLGMNNSTFGNASGWPHPLQKMSTHDLGTLAVRLITEFPQFYPYFSQKSFAF 182
Query: 196 K---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ N N + +GADG+KTG T +G+ +V SA+QG + ++ V+ G + R
Sbjct: 183 DGRVPDNHRNRNPLLALGIGADGLKTGHTNEAGYGLVGSAVQGKRRVVFVVSGLDSASLR 242
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
S + + + EV ++ + ++ K
Sbjct: 243 ASESERITNWALRQFIQKTIATPDDIITDAPVWMGEVTKVALVPAAPIELLLPVVGSDKL 302
Query: 313 AKDKE---SHFIDFEKITLLKNKITKK 336
E L + K+
Sbjct: 303 NALVEYHGPIQAPVSAGQELGKLVIKR 329
>gi|295690183|ref|YP_003593876.1| serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter segnis ATCC
21756]
gi|295432086|gb|ADG11258.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter segnis ATCC
21756]
Length = 433
Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats.
Identities = 101/316 (31%), Positives = 150/316 (47%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+A S P+L + + ++D N+G V+ + D P PAS+TK+MT Y
Sbjct: 22 LFGALAPTPASAAIPYLQLNASEPKYAAIVIDANSGEVLYDKRADSPRYPASVTKVMTLY 81
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ F L E + LT + +S A+ P+ + G +M++D A+K + VKSAND+AVA+
Sbjct: 82 LTFEALSEGRMKLTDRVVMSPRAAAQAPTKIGLRPGDSMSVDEAIKAMTVKSANDVAVAM 141
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE L +E +F M + LG+ + F+NA G+ +TARD+AILS I DFPQ
Sbjct: 142 AERLAGSESRFAALMTLRGQELGMRNSRFVNASGLPDSRQISTARDLAILSRAIMRDFPQ 201
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
Y YF I+G +G N + + G DG+KTG+T ASGFN+ SA++ + LIAV+
Sbjct: 202 YYSYFSIRGFTFRGNYVKGHNRLLDSMEGFDGLKTGYTNASGFNLAGSAVRDGRRLIAVV 261
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
LG R+ LL GF R + P V +
Sbjct: 262 LGGPSTAWRDNNMEDLLLTGFDVMKRRSRGERTTIAANIYEDDPSGPIQRPSVEQGDGDQ 321
Query: 304 INYNTQMKEAKDKESH 319
+ E
Sbjct: 322 AGLKIVLTENPHNPGP 337
>gi|332529901|ref|ZP_08405852.1| serine-type D-Ala-D-Ala carboxypeptidase [Hylemonella gracilis ATCC
19624]
gi|332040598|gb|EGI76973.1| serine-type D-Ala-D-Ala carboxypeptidase [Hylemonella gracilis ATCC
19624]
Length = 378
Score = 186 bits (471), Expect = 4e-45, Method: Composition-based stats.
Identities = 99/339 (29%), Positives = 159/339 (46%), Gaps = 20/339 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ LLD ++G +A + D PASLTKLMTAY+VF L++ + L
Sbjct: 9 SLAPKPPELAARAWLLLDLSSGQALAASNADQTLPPASLTKLMTAYLVFEALRDGRLSLE 68
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
P+TIS+ A P S + G + +++ +K L+V+S ND AVA+AE + + + FVQ
Sbjct: 69 KPLTISERARRQPGSRMFLEAGMRVPVEDLIKGLLVQSGNDGAVALAEGVAGSMENFVQA 128
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-- 195
MN ++ LGL ATHF N G+ G +TARD+ +L+ R+ +DFP++ HY+ I+
Sbjct: 129 MNEKARALGLGATHFANPTGLPVDGQQSTARDLGVLAQRLLSDFPEHAHYYGIRKYRYAG 188
Query: 196 -KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-----------GDQSLIAVI 243
N N + DGMKTG A G+++VA+A + G + L+AV+
Sbjct: 189 TPPANDSNRNLLLFRDPSVDGMKTGHVEAVGYSMVATAQREFPHLGAAGGPGPRRLLAVV 248
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVPNISEE---VC 297
LGA TR + LL+ G+ K ++ + + EV + V
Sbjct: 249 LGADSEQTRAAEAQRLLNWGYTAFEAVKLFEANQAVLTASIWKGRAAEVRLGRPQAIVVT 308
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ A + + LL+ + ++
Sbjct: 309 VPAGWGAQLRMDVVRADPLIAPLRQGQAAGLLRIREGER 347
>gi|138893689|ref|YP_001124142.1| D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2]
gi|196251175|ref|ZP_03149851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
gi|134265202|gb|ABO65397.1| D-alanine carboxypeptidase [Geobacillus thermodenitrificans NG80-2]
gi|196209316|gb|EDY04099.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
Length = 452
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 79/375 (21%), Positives = 142/375 (37%), Gaps = 41/375 (10%)
Query: 3 QFLVIIAMAMLSNIFPFLS------IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
F+ ++++ + ++PF + + L+D TG ++ E D AS+
Sbjct: 8 WFVWLLSICLCLTLWPFQATVKAESAPLDIRADAAILVDAQTGRILYEKNIDAVLGIASM 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MT Y++ +K K+ T S S ++ L A
Sbjct: 68 TKMMTEYLLLDAIKAKRVKWDQTYTPSDYVYRLSQDRSLSNVPLRKDGQYTVRELYEAMA 127
Query: 117 NDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------- 159
A A ++ + +EK FV+ MN K LGL F+N+ G+
Sbjct: 128 IYSANAATVAIAEIIAGSEKNFVRMMNEKGKELGLKDYKFVNSTGLSNSDLKGFHPQGTS 187
Query: 160 -QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL-----EIKGKKYPNTNWA----VGT 209
+ +AR MA L++R+ D P+ + I + N NW V
Sbjct: 188 QDEENVMSARAMATLAYRLLKDHPEVLETASIPKKLFREGTDDEIRMDNWNWMLPGLVYG 247
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL------DRNTRNKVSASLLSMG 263
+ G DG+KTG+T +G +A + LI+V++ A + R + + L + G
Sbjct: 248 YEGVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVMNAKNASGKTTKEARFEETKKLFNYG 307
Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323
F + + + ++ L E T K++ +E + K + +D
Sbjct: 308 FNQYSLQTLYPKGYQLKGKEKLPVAKGKEKEVRVKTGKKLSLLVRNGEEKQYKPVYVLDK 367
Query: 324 EKITLLKNKI--TKK 336
+K+T KK
Sbjct: 368 KKMTNEGKLTAPLKK 382
>gi|326204096|ref|ZP_08193957.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens
DSM 2782]
gi|325985863|gb|EGD46698.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium papyrosolvens
DSM 2782]
Length = 401
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 77/319 (24%), Positives = 136/319 (42%), Gaps = 12/319 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D +G V+ E + AS TK+MTA V K+ + +S
Sbjct: 53 PRVSAGAAIVMDAKSGRVLYEKNGYKRNSIASTTKIMTAIVAIENGKD-----DEDVIVS 107
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
K A+ S K+G L N L ++++S ND A+AIAE + + + F + MN +
Sbjct: 108 KRAASIGGSRVNLKEGKIYKLGNLLNAMMLRSGNDAAIAIAEHIGGSVEAFAEMMNRKAA 167
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G + T+F+ HG+ HY+T D+A+++ + ++ K +G NT
Sbjct: 168 QIGATNTNFVTPHGLDDPQHYSTPFDLAMITQYALKN-EKFCKIVSTKSSSFEGNPINNT 226
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
N + + GADG+KTG+T +G +V SA +I+V+L R+ R + S LL
Sbjct: 227 NEMLSLYPGADGVKTGYTGQAGRCLVTSATHNGWKVISVVLNCSTRSVRAQNSKILLDYA 286
Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVPNIS----EEVCTTQKE--IINYNTQMKEAKDKE 317
F N + + + ++ ++V K+ + K E
Sbjct: 287 FGNYSTYDYLKQGQQISEIGIHKGLNNSVGLCSDKDVSIPLKKDEADRIKAEYDIPKTLE 346
Query: 318 SHFIDFEKITLLKNKITKK 336
+ +I +K + K
Sbjct: 347 APIQKGSRIGTVKYVLDGK 365
>gi|289209131|ref|YP_003461197.1| beta-lactamase [Thioalkalivibrio sp. K90mix]
gi|288944762|gb|ADC72461.1| Beta-lactamase [Thioalkalivibrio sp. K90mix]
Length = 415
Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats.
Identities = 95/375 (25%), Positives = 170/375 (45%), Gaps = 40/375 (10%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE-------------------TNKLPYYTLLDTNTGHVI 42
R+ L+ +++A+ P ++ Y L+D ++G ++
Sbjct: 10 RRALMTLSLAVCVAAMPAMADEPLPVPGSGGAMPSGIPSPPSDVTAKSYALMDFDSGLML 69
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKG 99
A D PASLTKLMTAYVVF +++ + L +TIS+ A + G
Sbjct: 70 ASREADVDREPASLTKLMTAYVVFGEIRDGRLGLEDTVTISERAWRTGMRGASRMFIEVG 129
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ +++ L+ +I++S ND + A+AE++ +E FV MNN ++ LG++ ++F N+HG+
Sbjct: 130 DEVKVEDLLRGMIIQSGNDASTALAEAVAGSEGAFVDMMNNQARELGMTRSYFTNSHGLP 189
Query: 160 -QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
T+A+DMA+L+ + +FP Y+ + E N N + G DG+KT
Sbjct: 190 SDEPQSTSAQDMALLARALIREFPDLYGYYSERSFEFNDISQSNRNMLLWRDAGFDGLKT 249
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNT------RNKVSASLLSMGFYNKTDRKK 272
G+T A+G+N+V+SA + D+ LIAV+LG N R S +L++ G ++
Sbjct: 250 GWTSAAGYNLVSSAKRSDRRLIAVVLGIEASNHQEGGTRRANESQALVNWGMRFTEPQRL 309
Query: 273 INYII----KDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
Y+ S ++E+ V N M+ + E+ +
Sbjct: 310 FEAGTQLGSPRVYRGADSEVSVGLAEDFWVIVPPGRGDNLEATMELNQPLEAPLAAGAAV 369
Query: 327 TLL-----KNKITKK 336
+ I ++
Sbjct: 370 GEVQARLNGELIGQQ 384
>gi|209542214|ref|YP_002274443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209529891|gb|ACI49828.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 413
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats.
Identities = 87/315 (27%), Positives = 138/315 (43%), Gaps = 4/315 (1%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ +LD TG V+ E D P+SLTK+MTAY+VF LK + L + +
Sbjct: 62 PLDTVARWACILDVTTGSVLLEKAADERMPPSSLTKMMTAYIVFGMLKSGRLKLDQMLPV 121
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S+ A S G ++ + + ++ ++++S ND + +AE + +E++FV MN+ +
Sbjct: 122 SEKAWRMQGSKMFVPLGQSIAVQDLIQGMVIQSGNDACIVLAEGVAGSEEQFVAQMNDMA 181
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+GLS +HFMNA G HY +ARD+A L+ R+ DFP+Y H+F K N
Sbjct: 182 ARIGLSNSHFMNATGWPADNHYMSARDVAQLAVRLIRDFPEYYHFFSEKDYRFNKISQGN 241
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N V L ADG+KTG T A GF + ASA +G ++ + G N R LL
Sbjct: 242 RNVLVDKGL-ADGLKTGHTDAGGFGLCASADRGGNRVVLSLNGMPSSNARAHEGERLLEW 300
Query: 263 GFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
F N + + VP ++ + +
Sbjct: 301 SFANFENATLFRKGDIVEQASVWLGTQPTVPLVATRDIVMTLPHGWRSRAHIGVDYQAPV 360
Query: 320 FIDFEKITLLKNKIT 334
+L + +
Sbjct: 361 AAPVAAGQVLGDLVI 375
>gi|162147581|ref|YP_001602042.1| penicillin-binding protein 5 [Gluconacetobacter diazotrophicus PAl
5]
gi|161786158|emb|CAP55740.1| putative penicillin-binding protein 5 precursor [Gluconacetobacter
diazotrophicus PAl 5]
Length = 422
Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats.
Identities = 87/315 (27%), Positives = 138/315 (43%), Gaps = 4/315 (1%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ +LD TG V+ E D P+SLTK+MTAY+VF LK + L + +
Sbjct: 71 PLDTVARWACILDVTTGSVLLEKAADERMPPSSLTKMMTAYIVFGMLKSGRLKLDQMLPV 130
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S+ A S G ++ + + ++ ++++S ND + +AE + +E++FV MN+ +
Sbjct: 131 SEKAWRMQGSKMFVPLGQSIAVQDLIQGMVIQSGNDACIVLAEGVAGSEEQFVAQMNDMA 190
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+GLS +HFMNA G HY +ARD+A L+ R+ DFP+Y H+F K N
Sbjct: 191 ARIGLSNSHFMNATGWPADNHYMSARDVAQLAVRLIRDFPEYYHFFSEKDYRFNKISQGN 250
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N V L ADG+KTG T A GF + ASA +G ++ + G N R LL
Sbjct: 251 RNVLVDKGL-ADGLKTGHTDAGGFGLCASADRGGNRVVLSLNGMPSSNARAHEGERLLEW 309
Query: 263 GFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
F N + + VP ++ + +
Sbjct: 310 SFANFENATLFRKGDIVEQASVWLGTQPTVPLVATRDIVMTLPHGWRSRAHIGVDYQAPV 369
Query: 320 FIDFEKITLLKNKIT 334
+L + +
Sbjct: 370 AAPVAAGQVLGDLVI 384
>gi|238789672|ref|ZP_04633455.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii
ATCC 33641]
gi|238722225|gb|EEQ13882.1| D-alanyl-D-alanine carboxypeptidase dacA [Yersinia frederiksenii
ATCC 33641]
Length = 401
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 91/313 (29%), Positives = 144/313 (46%), Gaps = 11/313 (3%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
Y L+D ++G V+AE D +PASLTK+M++YV+ +K K +T+ K+A
Sbjct: 43 YVLMDYDSGKVLAEGNSDQRLDPASLTKIMSSYVIGQAIKAGKVHPDDLVTVGKDAWATG 102
Query: 91 PSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
K G + L + K ++++S ND ++A+A+ + ++ FV MNN +K
Sbjct: 103 NPALRGSSLMFLKPGDQVKLSDLNKGIVIQSGNDASIALADYIAGSQDSFVGLMNNYAKA 162
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
LGL+ T+FM HG+ G Y+TA DMA+L + D P+ + K + N N
Sbjct: 163 LGLNNTNFMTVHGLDAPGQYSTAHDMAVLGQALIRDVPEEYALHKEKEFTFNKIRQINRN 222
Query: 205 W-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
T L DGMKTG+T +G N+VASA G LI+V+LGA R S LL+ G
Sbjct: 223 RLLWNTNLNVDGMKTGYTTGAGHNLVASATDGPMRLISVVLGAPSDRVRFSESEKLLTWG 282
Query: 264 FYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
F I + + ++++ T + N + D+
Sbjct: 283 FRFYETVVPIKATKPFVTQKVWFGDTGQAELGVAQDAAITIPKGQMKNLKASYKLDQTEL 342
Query: 320 FIDFEKITLLKNK 332
K ++
Sbjct: 343 RAPLAKHQVVGTI 355
>gi|167766358|ref|ZP_02438411.1| hypothetical protein CLOSS21_00862 [Clostridium sp. SS2/1]
gi|167711949|gb|EDS22528.1| hypothetical protein CLOSS21_00862 [Clostridium sp. SS2/1]
Length = 399
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 89/355 (25%), Positives = 157/355 (44%), Gaps = 20/355 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLS--------IAE--TNKLPYYTLLDTNTGHVIAENYPDHPW 51
+ L++ A+ + S P ++ A +++ + ++ D
Sbjct: 5 KAILLVAAILVQSFYCPVMAREARFLETAAPVLDLSAKSAVVMEQESKEILFAKDKDKEL 64
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+M+ ++F LK+ K LT +T+S++A+ S + G + +K +
Sbjct: 65 APASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGSQVFLETGEKQQVQTLIKCV 124
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ SAND VA+AE +C +E+ FV MN ++ LG+ T F NA G+ GH T+A D+A
Sbjct: 125 VISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTFQNACGLDAKGHVTSAYDIA 184
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEI--------KGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+++ + +P+ Y +I I K NTN + + G GMKTG T
Sbjct: 185 LMTRELAQRYPEVFKYTKIWMDTIIHKTKKGEKEFGLSNTNKLIRQYHGCTGMKTGSTGK 244
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR--KKINYIIKDFY 281
+GF + A+A + +IAV++G R K + +LL GF N + I
Sbjct: 245 AGFCLSATATRNKIHMIAVVMGCESSKARIKDARTLLDYGFSNCQRIHSETTRKEIGRIP 304
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + E+V +I ++ + +S +K + K
Sbjct: 305 VQKGQRSEVSCQEKVTADLIDIKTQKGKIVKKIKIDSVKAPVKKGQKIGEIQYSK 359
>gi|229003020|ref|ZP_04160878.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus mycoides Rock1-4]
gi|228758220|gb|EEM07407.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus mycoides Rock1-4]
Length = 444
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 73/375 (19%), Positives = 138/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L + A + L++ ++G ++ + D
Sbjct: 12 KRFIAMVTVLTLFCSMFVTYGSASAETGAALNVEAGAAILVEADSGKILYQKNADELLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + +S+ A S + T+ +
Sbjct: 72 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+AE++ E FV+ MN+ +K LGL F+N+ G+
Sbjct: 132 AMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLKNYKFVNSTGLTNHDLKGQQPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ + DFP+ + +I + K N NW
Sbjct: 192 GTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKVFQEGGKYPVKMDNWNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
V + G DG+KTG T +G +A + LI+V++ R + L GF N
Sbjct: 252 VKEYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIKTNSHTARFDETKKLFDYGFTN 311
Query: 267 KTDRKKINYIIKD-------FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+K + + + + + + +
Sbjct: 312 FEVKKVYPKGSAVKGHETVRVENAKDKDVTIQTKQAIALPMLKGSKDAYKTEFKDVSKDK 371
Query: 320 FIDFEKITLLKNKIT 334
+K T L I
Sbjct: 372 EAPIKKGTTLGQMII 386
>gi|254455195|ref|ZP_05068630.1| D-alanyl-D-alanine carboxypeptidase [Octadecabacter antarcticus
238]
gi|198263605|gb|EDY87877.1| D-alanyl-D-alanine carboxypeptidase [Octadecabacter antarcticus
238]
Length = 399
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 78/340 (22%), Positives = 143/340 (42%), Gaps = 16/340 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ +++ P + + +LD +TG V+ D P PAS+ KLMT Y+
Sbjct: 9 FALFALFIASAAPVGAQTFDTRASAAYVLDHSTGVVLLAKNADDPLPPASMLKLMTLYMA 68
Query: 66 FSFL-----KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
F + ++ + + +S++ +Y S + +D+ L+ +IV S ND +
Sbjct: 69 FEAINPLNGQDPFLTVDDVLPVSQHCMDYTGSTMFLDTTDRVRVDDLLRGIIVLSGNDAS 128
Query: 121 VAIAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
IAE L + E F Q M ++ LG+ + F N++G G + RD+ +L+ R+
Sbjct: 129 CVIAEGLSRNGTEAGFAQQMTVRAQQLGMLNSSFANSNGWPAAGQRMSMRDLGLLANRLI 188
Query: 179 TDFPQYMHYFQIKGLEI---KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
TD+P + F + + N N + +GADG+KTG T +G+ +V SA QG
Sbjct: 189 TDYPTFYPLFAEQEFDYDGEHPANTRNRNPLLSLGIGADGLKTGHTIEAGYGLVGSAKQG 248
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI--- 292
D+ +I V+ G R + + +++ F T R + + E P +
Sbjct: 249 DRRIIFVVTGHETVQERAEEAERIVNWAFRQFTQRDIARSGTRIAQAEVWRGEQPLVGLL 308
Query: 293 ---SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + ++ E+ + I L
Sbjct: 309 LQEDLSLLVPTSGGSEISAEVVYNGPIEAPIAQGDTIAEL 348
>gi|228989223|ref|ZP_04149217.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus pseudomycoides DSM 12442]
gi|228770498|gb|EEM19068.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus pseudomycoides DSM 12442]
Length = 444
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 73/375 (19%), Positives = 138/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L + A + L++ ++G ++ + D
Sbjct: 12 KRFIAMVTVLTLFCSMFVTYGSASAETGAALNVEAGAAILVEADSGKILYQKNADELLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + +S+ A S + T+ +
Sbjct: 72 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+AE++ E FV+ MN+ +K LGL F+N+ G+
Sbjct: 132 AMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLKNYKFVNSTGLTNHDLKGQQPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ + DFP+ + +I + K N NW
Sbjct: 192 GTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKVFQEGGKYPVKMDNWNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
V + G DG+KTG T +G +A + LI+V++ R + L GF N
Sbjct: 252 VKEYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIKTNSHTARFDETKKLFDYGFTN 311
Query: 267 KTDRKKINYIIKD-------FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+K + + + + + + +
Sbjct: 312 FEVKKVYPKGSAVKGHETVRVENAKDKDVTIQTKQAIALPMLKGSKDVYKTEFKDVSKDK 371
Query: 320 FIDFEKITLLKNKIT 334
+K T L I
Sbjct: 372 EAPIKKGTTLGQMII 386
>gi|319778852|ref|YP_004129765.1| D-alanyl-D-alanine carboxypeptidase [Taylorella equigenitalis MCE9]
gi|317108876|gb|ADU91622.1| D-alanyl-D-alanine carboxypeptidase [Taylorella equigenitalis MCE9]
Length = 430
Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats.
Identities = 82/309 (26%), Positives = 143/309 (46%), Gaps = 5/309 (1%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + ++D +G +IA+ PD PASLTKLMT+ +VF +K+K+ L + +S
Sbjct: 82 PQLDVKSWIIIDMESGQIIAQYNPDLKVAPASLTKLMTSSLVFEAIKDKRISLDQEVIVS 141
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ A + S +T+ L+ +IV+S ND ++ +AES+ T FV+ MN++ +
Sbjct: 142 ERAWKTGGSRMFINVNKKVTIGELLQGMIVQSGNDASIQLAESVSGTIDAFVKEMNDSLQ 201
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ +HF + G+ YTTARD+++L+ I DFPQ+ HYF + NT
Sbjct: 202 AFHMLNSHFADPTGLPSPNTYTTARDLSVLAQHIIVDFPQFYHYFSQPEFTYNKIRQTNT 261
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
N +G G DG+KTG T +G+ +V S + ++ ++ +++GA R ++S L+
Sbjct: 262 NGLLGKIEGLDGLKTGHTDEAGYCLVTSVKRNNRRILTILMGADSIKHREQLSKQLIDWT 321
Query: 264 FYNKTDRKKINYIIKDFY----QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
F N + + V ++ V T N Q+
Sbjct: 322 FQNFVNIEWAKANTPFVEHSIRDAKNKKAVFQSTKPVVITVPRGHEANIQVLSN-TSNDL 380
Query: 320 FIDFEKITL 328
+
Sbjct: 381 KAPLKAGQA 389
>gi|228995406|ref|ZP_04155077.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus mycoides Rock3-17]
gi|228764332|gb|EEM13208.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus mycoides Rock3-17]
Length = 444
Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats.
Identities = 73/375 (19%), Positives = 138/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L + A + L++ ++G ++ + D
Sbjct: 12 KRFIAMVTVLTLLCSMFVTYGSASAETGAALNVEAGAAILVEADSGKILYQKNADELLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + +S+ A S + T+ +
Sbjct: 72 ASMTKMMSEYLVNEAVAKGKLKWDQKVKVSEYAHMISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+AE++ E FV+ MN+ +K LGL F+N+ G+
Sbjct: 132 AMAIYSANGATIALAEAIAGKEADFVKMMNDKAKELGLKNYKFVNSTGLTNHDLKGQQPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ + DFP+ + +I + K N NW
Sbjct: 192 GTTPDEENKMSARDCAILAQHLIQDFPKVLETAKIPKKVFQEGGKYPVKMDNWNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
V + G DG+KTG T +G +A + LI+V++ R + L GF N
Sbjct: 252 VKEYEGVDGLKTGSTPEAGDCFTGTAERNGMRLISVVIKTNSHTARFDETKKLFDYGFTN 311
Query: 267 KTDRKKINYIIKD-------FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+K + + + + + + +
Sbjct: 312 FEVKKVYPKGSAVKGHETVRVENAKDKDVTIQTKQAIALPMLKGSKDAYKTEFKDVSKDK 371
Query: 320 FIDFEKITLLKNKIT 334
+K T L I
Sbjct: 372 EAPIKKGTTLGQMII 386
>gi|312115142|ref|YP_004012738.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii
ATCC 17100]
gi|311220271|gb|ADP71639.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii
ATCC 17100]
Length = 410
Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats.
Identities = 74/326 (22%), Positives = 133/326 (40%), Gaps = 9/326 (2%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ TL+D +G + E D + PAS++K+MT V+F LK +
Sbjct: 17 ALAQSTGGYQTAAAEATLIDVESGATLFEKNADRLFAPASMSKIMTLAVIFKKLKAGEIT 76
Query: 76 LTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ T +S A ++ T + + ++ + V++AND +A+AE + T
Sbjct: 77 MDTEFPVSLYAWRNGGAPSRTTSMFIPLNQTAKVSDLIQGIAVQNANDACIAVAEGISGT 136
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
E F + M ++ LGL + F N+ G+ G+ TAR++A LS + +P YF
Sbjct: 137 EDAFAKLMTEEARALGLQKSTFGNSTGLPHPGNQMTARELAALSIHVIKTYPDLYPYFGQ 196
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + + + N N T + ADG+K GFT G++I ASA++ + L+ V+ G
Sbjct: 197 KEFKYRTYTFRNHNPLQATAIAADGLKPGFTEGVGYSIAASAVRDGRRLVLVMNGLESER 256
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R + + +L+ GF N K + + E+V
Sbjct: 257 DRREEAQKILNWGFVNFKAYKVFDKDEVVGDVRVWGGQKWTLPVKAKEDVVVLLPVNAKD 316
Query: 307 NTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++ +
Sbjct: 317 QRIRAQIAYQGPLKPPLKEGDPVGEV 342
>gi|118477901|ref|YP_895052.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str.
Al Hakam]
gi|118417126|gb|ABK85545.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
[Bacillus thuringiensis str. Al Hakam]
Length = 450
Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats.
Identities = 78/375 (20%), Positives = 139/375 (37%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ II + L + A + L++ N+G ++ E D
Sbjct: 33 KRFIAIITVLTLFCSITVISGSASAETVSAIEVEAGSAVLVEANSGKILYEKNADELLAI 92
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V ++ K + IS+ A + S + T+ +
Sbjct: 93 ASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 152
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 153 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 212
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N NW
Sbjct: 213 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQQGGKYPIDMTNFNWMLKGL 272
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G +A + LI+V++ A R + L GF N
Sbjct: 273 IKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIKANSHAARFDETKKLYDYGFAN 332
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
RK + V + V + + + +
Sbjct: 333 FEVRKVNEKDSVVNGHETVRIANAKDKDVVVQTKQAVSLPILKSNKDVYKKEFKVLNKEQ 392
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 393 EAPIKKGVTISKMII 407
>gi|153009406|ref|YP_001370621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
ATCC 49188]
gi|151561294|gb|ABS14792.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
ATCC 49188]
Length = 398
Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats.
Identities = 92/334 (27%), Positives = 152/334 (45%), Gaps = 11/334 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++++ + A K P L+D +G V+ + P PASL KLMTA VVF L++
Sbjct: 26 VASLAAPVEAAFVTKAPQVLLVDDRSGTVLLSKNANVPIPPASLVKLMTAEVVFEALEQG 85
Query: 73 KAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L TP T+S+NA S + ST T+ + L+ +IV+SAND A+ +AE L
Sbjct: 86 ATTLGTPYTVSENAWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGL 145
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E+ F MN+ +K LGL + F+N+ G+ G + +D+ L+ I+T P+Y Y
Sbjct: 146 AGSEQAFADRMNDRAKELGLIGSKFVNSTGLPAEGQVVSLQDLVRLARHIRTAHPEYYKY 205
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ N N + +GADGM TGFT ASGF +V SA Q + L + G
Sbjct: 206 YAQPAFTWNNIMQRNRNPLLRLDVGADGMGTGFTEASGFALVGSAEQNGRRLYLAMSGLA 265
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI------SEEVCTTQK 301
R + + LL G D + Q + ++ E+ +
Sbjct: 266 SIKEREEEAKRLLQWGMTAFDDVQLYPADEIVGEAQVFGGALTHVPLKVKDRVELLLPKD 325
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ ++ D +++ +L+ ++
Sbjct: 326 GRNKLKARIVYKGPLDAPVADNQQVGVLRLELNG 359
>gi|126642471|ref|YP_001085455.1| D-ala-D-ala-carboxypeptidase; penicillin-binding protein 5
(precursor) [Acinetobacter baumannii ATCC 17978]
Length = 346
Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats.
Identities = 79/309 (25%), Positives = 142/309 (45%), Gaps = 12/309 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---P 90
+D TG ++A + PAS+TK+MT+Y++ L + + + ++++A
Sbjct: 1 MDYETGQILASKNENEKLAPASMTKMMTSYIIEQKLLKGELTENEQVRMNESAWCKGSSS 60
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
S T T+ L+ +I++S ND + A+AE + E F MN +K +G++ T
Sbjct: 61 ESCMYVPLNGTATVLEMLRGIIIQSGNDASKAMAEHIAGNEGTFAHMMNQEAKRIGMTNT 120
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
F+N+ G+ GHY+TA+DMA+L+ I D +Y + K G K N N + T
Sbjct: 121 QFINSTGMPAEGHYSTAKDMAVLAQHIIKDSSKYYPIYSEKEFTFNGIKQGNRNALLYTD 180
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270
DG+KTG T +G+ + S+ +G LI+VI G + R + +LL+ GF N
Sbjct: 181 PSVDGLKTGHTDEAGYCLTTSSKRGPMRLISVIFGTPSMSERADQTRALLAWGFANFETA 240
Query: 271 ------KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
+ + F ++N + V + + TQ+ + + +
Sbjct: 241 NVQPANQVLAKAKVWFGKENEVQVGLAENFNVTMPKGKADGIKTQLVV---QPNLNAPLQ 297
Query: 325 KITLLKNKI 333
K ++ +
Sbjct: 298 KGQVVGKLV 306
>gi|329120772|ref|ZP_08249433.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria bacilliformis
ATCC BAA-1200]
gi|327460142|gb|EGF06480.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria bacilliformis
ATCC BAA-1200]
Length = 432
Score = 185 bits (468), Expect = 9e-45, Method: Composition-based stats.
Identities = 91/306 (29%), Positives = 146/306 (47%), Gaps = 5/306 (1%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
Y + D +G ++ D P PASLTKLMTAY+ F L+ K T +T S+ A
Sbjct: 84 YLVQDLQSGQILTGRDLDKPVEPASLTKLMTAYLAFKALESGKLNATDTLTPSEKAWRAE 143
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
S G + + + LK LIV+S ND A+ +AE+L +E+ F + MN +K LG++ T
Sbjct: 144 GSRMFLNAGKPVAVGDLLKGLIVQSGNDAAITLAEALGGSEEGFAKMMNAEAKRLGMNGT 203
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
HF NA G+ GH+TT RD+AIL+ I D+P+Y + ++ + + PN N +
Sbjct: 204 HFTNATGLPGDGHFTTVRDLAILAAAIIRDYPKYYPIYSMQSFKYNNIEQPNRNLLLYRD 263
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270
DG+KTG T ++G+N+VAS+ + + +++V++G R S+ LL+
Sbjct: 264 PNVDGLKTGHTNSAGYNLVASSKRNGRRVVSVVVGTESIEARAGESSKLLNWALQAFDTP 323
Query: 271 KKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
K + Y+ +E V T + + + EK
Sbjct: 324 KAYDAGKAVSAAQVYKGKADTVNVGFAEPVYVTIPHGEGSKVKTVL-ETVQPVVAPVEKG 382
Query: 327 TLLKNK 332
+L
Sbjct: 383 QVLGKL 388
>gi|92117541|ref|YP_577270.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
X14]
gi|91800435|gb|ABE62810.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
X14]
Length = 414
Score = 185 bits (468), Expect = 9e-45, Method: Composition-based stats.
Identities = 81/335 (24%), Positives = 145/335 (43%), Gaps = 14/335 (4%)
Query: 10 MAMLSNIFPFLSIAETNK---LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+A+ +N + E P L++ N+G V+ E D P+S+ KLMT VVF
Sbjct: 33 IALAANNSVQGAKKEEIYETVAPTAILVEANSGSVLFEKNADELHAPSSMMKLMTVEVVF 92
Query: 67 SFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+++ + LT IS+N S S +++D+ L I++S ND +
Sbjct: 93 DAIRKGQIKLTDEFVISENTWRKGGAPSGGSTMFAAINSRVSVDDLLHGAIIQSGNDSCM 152
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+AE + E F + M +++LG++ + F N++G+ G+ T R++A+L+ I +
Sbjct: 153 ALAEGIAGNESAFAEKMTARARDLGMTRSTFANSNGLPDPGNKMTVRELAVLARHIVLTY 212
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P + F + + N N + GADG+KTG+T G+ +V SA+Q LI
Sbjct: 213 PDFYKLFGEREFTWNKIRQFNRNPLLTAMEGADGLKTGYTKEGGYGMVGSAVQNGTRLIV 272
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EE 295
V+ G + R + LL GF N R Y + + ++ +
Sbjct: 273 VVNGLASADDRAAAAKKLLEWGFRNFEVRTLFAAEQTIGYAKVFGGDSGSVRVAASEPVQ 332
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
V + ++ + + I ++K
Sbjct: 333 VMVQKNGSDRLIARIVYTGPVHAPIAPEQPIGVIK 367
>gi|229026963|ref|ZP_04183283.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH1272]
gi|228734350|gb|EEL85024.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH1272]
Length = 453
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 75/375 (20%), Positives = 138/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ E D
Sbjct: 23 KRFIAIVTVLTLFCSMIVTFGRASAETVPAIDVEAGSAILVEANSGKILYEKNADESLAI 82
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 83 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 142
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 143 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 202
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N NW
Sbjct: 203 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQNGGKYPIDMTNFNWMLKGL 262
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 263 IKEYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDETKKLYDYGFAN 322
Query: 267 KTDRKKINYIIKDFYQQ-------NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+K + + V + + + + + E
Sbjct: 323 FEVKKVYGKESVVKGYETVRVANAKDKDVVVQTKQAILLPIPKSNKDVYKKEFKVSNEEQ 382
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 383 EAPIKKGVTISKMII 397
>gi|225572270|ref|ZP_03781134.1| hypothetical protein RUMHYD_00564 [Blautia hydrogenotrophica DSM
10507]
gi|225040275|gb|EEG50521.1| hypothetical protein RUMHYD_00564 [Blautia hydrogenotrophica DSM
10507]
Length = 414
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 78/320 (24%), Positives = 153/320 (47%), Gaps = 11/320 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ PY L++ +TG ++ E D +PAS+TK+MT ++F ++ + +T S
Sbjct: 53 IQSPYGVLMEASTGEILYEKEKDTKRSPASITKIMTLILIFDAIENGSLNMDDMVTTSAY 112
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A S ++G T ++ +K +++ S ND +VA+AE + +E++FV+ MN+ +++L
Sbjct: 113 AKSMGGSQVYLEEGETQDVETMIKCIVIASGNDASVAMAEHIAGSEEEFVKKMNDRAQSL 172
Query: 146 GLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199
G+ THF + G+ HYTTA D+A++S + T +P+ + Y I I K
Sbjct: 173 GMKNTHFEDCCGLTDSENHYTTAYDVALMSRELITHYPKILEYSSIWMDTITHKTRQGTS 232
Query: 200 ---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
NTN + ++ G G+KTG T + + + A A + SLI+V++ A D R +
Sbjct: 233 EFGLTNTNKLIRSYEGCVGLKTGSTSLAKYCVSAVAQKNGMSLISVVMAAPDYKVRFSDA 292
Query: 257 ASLLSMGFYNKTDRKKINY--IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
A++ + GF + ++ N + + ++V + + ++ +
Sbjct: 293 AAMFNYGFAKCSLYQEPNPDRTFQLKVLRGKESQVRGEYGKAFSYLDTSGRSLDKITQKT 352
Query: 315 DKESHFIDFEKITLLKNKIT 334
+ +K + +
Sbjct: 353 KLKELTAPVKKGDTVGKTVY 372
>gi|260459469|ref|ZP_05807724.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
opportunistum WSM2075]
gi|259035023|gb|EEW36279.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
opportunistum WSM2075]
Length = 387
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 73/328 (22%), Positives = 135/328 (41%), Gaps = 11/328 (3%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P + K ++D +TG V+ D P PAS+ KLMT VVF+ +K + L
Sbjct: 23 PAHAQLFETKAAQAFMIDADTGTVLFSKDADKPIQPASMAKLMTMEVVFNAIKSGRLKLD 82
Query: 78 TPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+S+NA S K S++ L++ ++ + V++AND + IAE + +E
Sbjct: 83 DTFVVSENAWRKGGAPSGTSTMFAKLKSSVRLEDLIQGVTVQAANDGCIVIAEGMAGSED 142
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F M ++ +GL + F+N+ G+ G T+ R++ L+ + ++P + Y+ +K
Sbjct: 143 NFAAQMTERARQIGLKTSTFVNSTGLPADGQQTSVRELTQLALHLWRNYPDFYRYYSLKD 202
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
N N + +GADG+ G + ASGF IV S +IA + G + R
Sbjct: 203 FTWNKISQRNRNPLLAMDIGADGLAVGASEASGFGIVGSVSHNGTRVIAALSGLANDKER 262
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE------VCTTQKEIINY 306
+ + LL G + + Q ++ + +
Sbjct: 263 AEEARKLLDWGVRSFEKTEIFAKDEVVGEAQVFGGAKSGVTLKAKGPIAIFLPITNRDKL 322
Query: 307 NTQMKEAKDKESHFIDFEKITLLKNKIT 334
++ + + + + L+ I
Sbjct: 323 TAKIVYNGPVAAPVEEGQPVGALRVWIG 350
>gi|291536082|emb|CBL09194.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1]
Length = 348
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 87/312 (27%), Positives = 146/312 (46%), Gaps = 11/312 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
++ +TG V+ E +PAS+TK+MT ++F L K+ L +T+S+ A+ S
Sbjct: 1 MEASTGAVVYEKNSHEARHPASVTKIMTLLLIFDALSSKQISLDDTVTVSEYAASMGGSQ 60
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ G T T++ +K + V SAND VA+AE + +E +FV+ MN +K LG++ T+F+
Sbjct: 61 VFLEPGETQTVETMIKCISVASANDACVAMAEHVAGSESEFVRMMNERAKGLGMNDTNFV 120
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNW 205
N G+ GH T+A D+A++S + T +P+ Y I I NTN
Sbjct: 121 NCCGLDADGHMTSANDIALMSRELITKYPKIHDYCTIWMENITHTTAKGSSEFGLTNTNK 180
Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ + A G+KTGFT + + I A+A + D LIAVI+GA D +R+ + +LL+ GF
Sbjct: 181 LIKHYQYATGLKTGFTNTAMYCISATAKKDDMELIAVIMGAPDIKSRSADATTLLNYGFG 240
Query: 266 N---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
D + + + + + K + E+
Sbjct: 241 KCRIYCDSHEDKLDDLPVEKGLADSVGIIYQRPFQYMTTDGSDLTGITKSIELPENVTAP 300
Query: 323 FEKITLLKNKIT 334
+K +
Sbjct: 301 VKKGNTAGKAVY 312
>gi|209885251|ref|YP_002289108.1| penicillin-binding protein 6 [Oligotropha carboxidovorans OM5]
gi|209873447|gb|ACI93243.1| penicillin-binding protein 6 [Oligotropha carboxidovorans OM5]
Length = 425
Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats.
Identities = 77/314 (24%), Positives = 127/314 (40%), Gaps = 8/314 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P L++ TG V+ E D P+S+ KLMTA V+F L + + LT IS+
Sbjct: 62 DTDAPTAILIEAKTGSVLFEKNADELRAPSSMMKLMTAEVIFHALAKGEIKLTDEYRISE 121
Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
NA S S +++D+ L L ++S ND +A+AE +E FV M
Sbjct: 122 NAWRRGGAPSGGSTMFAAIHSIVSVDDLLHGLAIQSGNDSCIALAEGYAGSESAFVAKMQ 181
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ +GL+ + F N +G+ + + R++ L+ + +P F + +
Sbjct: 182 ARAREIGLARSTFGNTNGLPDPDNKMSVRELGHLARHLILTYPDLYKLFGEREFTWNKIR 241
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N + + GADG+KTG+T GF +V SA+Q L+ V+ G D R + L
Sbjct: 242 QQNRNPLLASLDGADGLKTGYTKEGGFGMVGSAVQNGTRLVVVVNGLSDAADRAAAAKRL 301
Query: 260 LSMGFYNKTDRKKINYIIKDFY---QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
L GF N R Y + + + E + + K
Sbjct: 302 LEWGFKNFETRTLFEANQTVGYGKVFGGDTGRIALHANEPVGVMVQRNGSDKINARIIYK 361
Query: 317 ESHFIDFEKITLLK 330
+ +
Sbjct: 362 GPVRAPVQSGDRIG 375
>gi|89056340|ref|YP_511791.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1]
gi|88865889|gb|ABD56766.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1]
Length = 468
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 98/282 (34%), Positives = 149/282 (52%), Gaps = 4/282 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
F+ + +A+L F ++A ++D G V+ D +PASLTK+M
Sbjct: 2 FVRNLFVALLGVQILFGAVAPAQVNAAPYAAMVMDARNGEVLHSRNADTRLHPASLTKMM 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F ++ + L T +T+S NA+ PPS G+T+ L L+ ++S ND A
Sbjct: 62 TLYIAFEAIRLGEITLDTEVTVSANAAAEPPSRLGLSAGTTIRLRYLLRAAAIRSGNDAA 121
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
AI E++ +E F + M T++ LG++ T F NAHG+ + GH +TARDM +L R+ D
Sbjct: 122 TAIGEAISGSEAAFARRMTRTARALGMTRTTFRNAHGLTEDGHLSTARDMTMLGRRLVYD 181
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+PQY + F + NTN V T+ GADG+KTG+T A+GFN+VASA +G++ +
Sbjct: 182 YPQYYNLFSRVTADAGIATIRNTNRVVLTTYRGADGIKTGYTRAAGFNLVASAQRGEERI 241
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
IA + G RN+ LL MGF + Y
Sbjct: 242 IATVFGGRSSAWRNQRVMELLDMGFERAPSHVALRTPPLPTY 283
>gi|28211200|ref|NP_782144.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
gi|28203640|gb|AAO36081.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
Length = 395
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 89/360 (24%), Positives = 157/360 (43%), Gaps = 25/360 (6%)
Query: 2 RQFLVIIAMAMLS--NIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPWN 52
+ F++ I + + + P AE + L++ N+G +I E +
Sbjct: 6 KTFILTILLIFIFQCTVVPIRVKAEGEDKGEIQVEASSALLMEPNSGKIIYEKNANEKLP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPPSNSTFKKGSTMTLDNALK 109
PAS+TK+MT + + K LT IT+S+N + S+ G T++ LK
Sbjct: 66 PASVTKIMTMLIAMEAVDSGKIKLTDKITVSENAKKNGQGGNSSMLLDTGEIRTVEEILK 125
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+ + S ND A A+AE L +E+ FV+ MN+ +K LG+ T+F N G+ + GH TTA D
Sbjct: 126 GIAIASGNDAATAMAEYLDGSEEAFVKTMNDRAKALGMKNTNFKNCSGLPEEGHITTAYD 185
Query: 170 MAILSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+A++S + + I N N V F G DG+KTG+T +
Sbjct: 186 IALMSKELLKHPTILKYTGTYMETISEGRKSPIGLVNHNKLVRFFKGCDGLKTGYTSEAK 245
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285
+ I A+A++ ++ VI+GA + RNK +++L++ GF ++ I + +
Sbjct: 246 YCISATAVRDGVRVLTVIMGAPNYKIRNKEASNLMNYGFSKFENKNIIKRDSEVEKVKLG 305
Query: 286 SNE------VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI---TLLKNKITKK 336
+E +V + + DK+ + + +K+ K
Sbjct: 306 KSEDKFFIAKALEDLDVVVERGSKDKITKKPIVNLDKKYYNKGEVVGHCEVYVGDKLIGK 365
>gi|310658666|ref|YP_003936387.1| serine-type d-ala-d-ala carboxypeptidase [Clostridium sticklandii
DSM 519]
gi|308825444|emb|CBH21482.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Clostridium
sticklandii]
Length = 433
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 70/355 (19%), Positives = 128/355 (36%), Gaps = 32/355 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ I+ + + + I L++ ++G ++ E + P PAS TK+MTA
Sbjct: 11 IITILFLNLFISSSFASPIEPDISAEAAILIEIDSGEILYEKNANAPMYPASTTKIMTAL 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ L IT+ ++ S G T+ L L+VKSAND AV +
Sbjct: 71 LALEH-----LNLEDKITVPEDMGPADGSAMYLLPGEVFTVRELLDGLLVKSANDAAVLL 125
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--- 180
A ++ + F MN +K++G + T F N +G+ H +A DMA+++ +
Sbjct: 126 ARTISGDIQSFATLMNQRAKDIGCANTSFANPNGLHDPSHTISAHDMALIAREAMKNATF 185
Query: 181 -----------------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ + L K N + + DG+KTG+T
Sbjct: 186 RELVSQVNVTLNETPQTPEKRYFRNTNRFLWSTSKIIYNNEYIPIKYEVVDGIKTGYTGE 245
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKD 279
+G +V+S + D +I+V+ A + S LL GF N + I +
Sbjct: 246 AGNCLVSSGKKNDIRVISVVFKA-SGYDVYRDSRLLLDYGFDNFEKKTLIKKDTVLGSQP 304
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + E + + + K ++ +
Sbjct: 305 INYSSQGSLEYGTKENFVVPYLK--SSLPVYNTKIMLNDLKLPISKGDIVGKLVI 357
>gi|299068147|emb|CBJ39364.1| D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a
[Ralstonia solanacearum CMR15]
Length = 397
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 82/321 (25%), Positives = 148/321 (46%), Gaps = 15/321 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L D +G V+ D PASLTKLMTAY+ + +++ K +T ++
Sbjct: 38 QVAARAWMLTDVTSGQVLGGGNMDERIEPASLTKLMTAYLAVAAVRDGKLKYDQMLTPTE 97
Query: 85 --NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ + S + G +++ + L+ LIV+S ND A+ +AE++ TE FV MN +
Sbjct: 98 TVRSVKTDESRMFLQPGKPVSVRDLLQGLIVQSGNDAALVLAEAVGGTETNFVMLMNREA 157
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ LG+ THFMNA G+ HYTTARD++IL+ + DFP+ ++ K K PN
Sbjct: 158 ERLGMKGTHFMNAAGLPDPNHYTTARDLSILTSALIRDFPEDYKFYSQKEFTYNNIKQPN 217
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKV 255
N + DG+KTG T ++G+ ++ SA + + L++V++G R +
Sbjct: 218 RNRLLWIDPTVDGVKTGHTKSAGYCLITSAKRPLPDVPNASRRLLSVMIGTKSEQVRTQE 277
Query: 256 SASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQ 309
S +L+ G+ + D Y+ ++E+ + +
Sbjct: 278 SLKVLNYGYQFFDTLRLYEAKQALQTPDVYKGQAKTVKLGVAEDKWITVPKGSGGRLKPV 337
Query: 310 MKEAKDKESHFIDFEKITLLK 330
++ + +++ +K
Sbjct: 338 LERKDPLIAPIAQGQQLGTVK 358
>gi|146276594|ref|YP_001166753.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
ATCC 17025]
gi|145554835|gb|ABP69448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
ATCC 17025]
Length = 473
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 88/270 (32%), Positives = 137/270 (50%), Gaps = 1/270 (0%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
M + + + ++D TG + E +PASLTK+MT Y+ F +
Sbjct: 12 MLFVVAAVVVAAQSAVAAPYAAIVMDARTGETLYETNARTRLHPASLTKMMTLYITFQAI 71
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ + L + +T++KNA+ PPS K G + L ++ VKSAND A AI E++
Sbjct: 72 QRGEISLDSMVTVAKNAAAEPPSKLGLKSGQRIALRYLIRAAAVKSANDAATAICEAVGG 131
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+E F + MN T+K +G++ + F N HG+ GH +TA DM +L R+ DFPQY + F
Sbjct: 132 SEAAFTERMNRTAKAIGMTNSTFKNCHGLTAEGHLSTAYDMNMLGRRLFFDFPQYYNIFS 191
Query: 190 IKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ + NTN + GADG+KTG+T +G+N+ SA +G++ +IA + G
Sbjct: 192 RRTADAGVTTVSNTNRRFLDAYKGADGIKTGYTSPAGYNLTGSAQRGNKRIIATVFGGKS 251
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
RN A LL +GF K+
Sbjct: 252 TAHRNAKMAELLDLGFREAPANAKVRKPAP 281
>gi|188588716|ref|YP_001921477.1| penicillin-binding protein DacF [Clostridium botulinum E3 str.
Alaska E43]
gi|188498997|gb|ACD52133.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E3
str. Alaska E43]
Length = 396
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 23/352 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
+++ + + +L+ I + + + L++ TG V+ E P
Sbjct: 5 IKRIISFTLIFVLTIILIPIGAVNASMLEDEVKAEGMNVEAKSALLIEPTTGKVVYEKNP 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D + PAS+TK+MT + + K L +T S+NA + S G +++
Sbjct: 65 DEKFAPASVTKIMTMLLTMEAVDNGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRSVEEL 124
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
LK + + S ND AVA+AE L TE FV MN ++ LG+ T F N +G+ GH +TA
Sbjct: 125 LKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVFKNCNGLPADGHLSTA 184
Query: 168 RDMAILSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
RD++++S + + I + N N V F G DG+KTGFT
Sbjct: 185 RDISLMSIELLKHPTILKYTGTYMDSISEGRKSPIELVNHNKLVRFFEGCDGLKTGFTNE 244
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
+ + I A+A + ++ VI+GA RN+ + LL+ GF +K ++
Sbjct: 245 AKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGFSKYEGKKIVSKDEDVEKVL 304
Query: 284 NLSNE----VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ +++ + N K ++ ++ ++
Sbjct: 305 MDKQTDRFFMAKAKDDLTAILPKGSNGEISKKIVIEELKPE--YKMGDIVGK 354
>gi|229184724|ref|ZP_04311923.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BGSC 6E1]
gi|228598738|gb|EEK56359.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BGSC 6E1]
Length = 429
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 78/375 (20%), Positives = 139/375 (37%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ II + L + A + L++ N+G ++ E D
Sbjct: 12 KRFIAIITVLTLFCSITVISGSASAETVSAIEVEAGSAVLVEANSGKILYEKNADELLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V ++ K + IS+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 132 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N NW
Sbjct: 192 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQQGGKYPIDMTNFNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G +A + LI+V++ A R + L GF N
Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIKANSHAARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
RK + V + V + + + +
Sbjct: 312 FEVRKVNEKDSVVNGHETVRIANAKDKDVVVQTKQAVSLPILKSNKDVYKKEFKVLNKEQ 371
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 372 EAPIKKGVTISKMII 386
>gi|291559238|emb|CBL38038.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SSC/2]
Length = 399
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 89/355 (25%), Positives = 156/355 (43%), Gaps = 20/355 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLS--------IAE--TNKLPYYTLLDTNTGHVIAENYPDHPW 51
+ L++ A+ + S P ++ A +++ + ++ D
Sbjct: 5 KAILLVAAILVQSFYCPVMAREARFLETAAPVLDLSAKSAVVMEQESKEILFAKDKDKEL 64
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+M+ ++F LK+ K LT +T+S++A+ S + G + +K +
Sbjct: 65 APASVTKIMSLLLIFEDLKQGKIKLTDTVTVSEHAASMGGSQVFLETGEKQQVQTLIKCV 124
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ SAND VA+AE +C +E+ FV MN ++ LG+ T F NA G+ GH T+A D+A
Sbjct: 125 VISSANDAVVALAEHVCGSEEAFVSRMNKKARELGMKHTTFQNACGLDAKGHVTSAYDIA 184
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEI--------KGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+++ + +P+ Y +I I K NTN + + G GMKTG T
Sbjct: 185 LMTRELAQRYPEVFKYTKIWMDTIIHKTKKGEKEFGLSNTNKLIRQYHGCTGMKTGSTGK 244
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR--KKINYIIKDFY 281
+GF + A+A + +IAV++G R K + LL GF N + I
Sbjct: 245 AGFCLSATATRNKIHMIAVVMGCESSKARIKDARILLDYGFSNCQRIHSETTRKEIGRIP 304
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + E+V +I ++ + +S +K + K
Sbjct: 305 VQKGQRSEVSCQEKVTADLIDIKTQKGKIVKKIKIDSVKAPVKKGQKIGEIQYSK 359
>gi|255262711|ref|ZP_05342053.1| D-alanyl-D-alanine carboxypeptidase family protein [Thalassiobium
sp. R2A62]
gi|255105046|gb|EET47720.1| D-alanyl-D-alanine carboxypeptidase family protein [Thalassiobium
sp. R2A62]
Length = 465
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 102/296 (34%), Positives = 154/296 (52%), Gaps = 5/296 (1%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
M+ +I ++ A ++D TG V+ D +PASLTK+MT Y+ F ++
Sbjct: 1 MILSIPVRVAAAP----YAAMVIDARTGEVLHSRNADTRLHPASLTKMMTLYIAFQAVER 56
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ L T ITI + A+ PPS + G + L ++ VKSAND A AI ++ +E
Sbjct: 57 GELSLDTMITIPRVAANEPPSKLGLRAGQKIRLRYLIRGAAVKSANDAATAIGVAISGSE 116
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
F + M T++ +G+S T F NAHG+ ++GH +TARDM L + D+PQY + F +
Sbjct: 117 AAFARRMTRTAEAMGMSRTTFKNAHGLTENGHMSTARDMTNLGRHMIYDYPQYYNLFSRR 176
Query: 192 GLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ ++ NTN +G + GADG+KTG+T A+GFN+VASA +G + +IA + G
Sbjct: 177 SADAGVREVANTNRRLLGNYRGADGIKTGYTRAAGFNLVASAERGQERVIATVFGGRSSA 236
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
TRN A LL MGF R + Y N + E T ++I
Sbjct: 237 TRNDRVAELLDMGFARAPARAALRRPSLPRYTGNGGSAPSPTQEYAPGTAGKVIRV 292
>gi|225076059|ref|ZP_03719258.1| hypothetical protein NEIFLAOT_01091 [Neisseria flavescens
NRL30031/H210]
gi|224952619|gb|EEG33828.1| hypothetical protein NEIFLAOT_01091 [Neisseria flavescens
NRL30031/H210]
Length = 405
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 81/363 (22%), Positives = 150/363 (41%), Gaps = 32/363 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS--------------------------IAETNKLPYYTLL 34
M++ L+ + A L N + Y +
Sbjct: 2 MKKTLLSLIFAALLNTHALAADPVASGPAVQSEAQTQPLLRSINSPTTPPEIAATAYIVT 61
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D ++ +A N D P PA+LT++MTAY+ F L+ +T+S + S
Sbjct: 62 DLHSKQTLASNNADTPIEPAALTQMMTAYLAFKALENGTLQADQMLTVSNVGWKVEGSRM 121
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFM 153
+++ + +K ++SAND A+ +AE+ + +FV+ MN +K LG+ THF
Sbjct: 122 FLNPKVPVSVSSLIKGTTIQSANDAAITLAEALGNGSVDEFVKQMNEEAKRLGMKHTHFN 181
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
N G+ +GH +T D+AIL+ + D+P+Y F K + + PN N +
Sbjct: 182 NPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIEQPNRNLLLYRDSSI 241
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
DG+KTG++ +G+++ AS+ + ++ +++++ GA R S+ LL+ K
Sbjct: 242 DGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKLLNWSLQAFDTPKLY 301
Query: 274 NYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
Y+ + ++V T N + + + EK +L
Sbjct: 302 KGGEVISQVKVYKGSTKAVDIGFLDDVYITIPHDTGKNVKP-ILETLQPVLAPIEKGQVL 360
Query: 330 KNK 332
Sbjct: 361 GKL 363
>gi|254509295|ref|ZP_05121387.1| penicillin-binding protein 6 [Vibrio parahaemolyticus 16]
gi|219547783|gb|EED24816.1| penicillin-binding protein 6 [Vibrio parahaemolyticus 16]
Length = 293
Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats.
Identities = 87/293 (29%), Positives = 136/293 (46%), Gaps = 16/293 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFL------------SIAETNKLPYYTLLDTNTGHVIAENYPD 48
M++ +I ++ S A Y L+D ++G V+AE +
Sbjct: 1 MKKTTLIKSVFASSIALSATFATSAIATPIVVPDAPQIAAKGYVLMDFHSGKVLAEKEMN 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLD 105
+PASLTK+MT+YV+ L+ L +TISKNA S + G+T+ ++
Sbjct: 61 TKLSPASLTKMMTSYVIGQELERGNISLQDDVTISKNAWAKNFPDSSKMFIEVGTTVKVE 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ + +I++S ND VA+AE + +E FV MN + +G+ THF N HG+ Y+
Sbjct: 121 DLNRGIIIQSGNDACVAMAEHIAGSEDAFVDLMNAWADTIGMKDTHFANVHGLDNPDLYS 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCAS 224
T DMA+L + D P + K G N N + DG+KTG T +
Sbjct: 181 TPYDMALLGSALIRDVPDEYRIYSEKKYTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNA 240
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
G+++V+SA +G L+AV++G + N R S LLS GF
Sbjct: 241 GYSLVSSATEGKMRLVAVVMGTKNANARKSESKKLLSYGFRFFETVAPHKAGE 293
>gi|84499966|ref|ZP_00998232.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola batsensis HTCC2597]
gi|84391900|gb|EAQ04168.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola batsensis HTCC2597]
Length = 406
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 76/317 (23%), Positives = 139/317 (43%), Gaps = 11/317 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D T V+ + D P PAS++KLMT Y+ F L++ + L + +S
Sbjct: 30 FDTQARAAYVMDLTTRTVLLDKNADMPLPPASMSKLMTLYIAFEALRDGRLRLDEELPVS 89
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT--EKKFVQHMNNT 141
+A Y S + +++ L+ +IV S ND V +AE+L E F ++M
Sbjct: 90 SHAMSYGGSTMFLDTTDRVKVEDLLRGIIVLSGNDACVVLAEALSPDGTEAGFARYMTQR 149
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GK 198
++ +G++ + F N++G GH + RD+A+L+ R+ DFP + F + +
Sbjct: 150 AQKMGMTNSTFANSNGWPAAGHRMSMRDLALLAARLIEDFPNFYPLFAERTFAFDGRAPQ 209
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
N N +G +GADG+KTG T +G+ +V SA QGD+ +I + G R + S +
Sbjct: 210 NNTNRNPLLGLGIGADGLKTGHTEEAGYGLVGSAKQGDRRVIFALSGLPTTAARAQESEA 269
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV------CTTQKEIINYNTQMKE 312
+++ F T + + +VP +S ++
Sbjct: 270 IINWAFRQFTQKSLLKAGETVTKATVHMGDVPTVSLTTEDDLTALLPVLAGDEIPAEVVY 329
Query: 313 AKDKESHFIDFEKITLL 329
+ + + L
Sbjct: 330 NGPISAPVALGQPVAEL 346
>gi|253578836|ref|ZP_04856107.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849779|gb|EES77738.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 399
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 93/363 (25%), Positives = 165/363 (45%), Gaps = 30/363 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAET------------------NKLPYYTLLDTNTGHVIA 43
++++ II ++ + + P L++ TG V+
Sbjct: 3 KKWISIICAILIMVCTITTPVYAAGIFLPEESNTRQAESTDLIEAPSGILMEAQTGTVVY 62
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
+ D +PAS+TK+MT ++F L + + +T S +A S ++G T
Sbjct: 63 QKDADTRRSPASITKIMTLILIFDALDKGSLKMDDTVTTSAHAKSMGGSQVFLEEGEIQT 122
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHG 162
++ +K +++ S ND +VA+AE +C +E++FV+HMN ++ LG+ THF + G+
Sbjct: 123 VETLIKCIVIASGNDASVAMAEHICGSEQEFVRHMNERAEGLGMKNTHFEDCCGLTESPD 182
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGAD 214
HYTTARD+AI+S + T +P+ + Y I I NTN + ++ G
Sbjct: 183 HYTTARDIAIMSRELITKYPKILEYSSIWMENITHVTRQGTKEFGLTNTNKLIRSYEGCV 242
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR--KK 272
G+KTG T + + + A A + D +LIAV++ A D R K +AS+L+ GF + KK
Sbjct: 243 GLKTGSTSIAKYCLSAVAKRNDITLIAVVMAAPDYKVRFKDAASMLNYGFSKCSLYIDKK 302
Query: 273 INYIIKDFYQQNLSNEVPNI-SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ + + + V + E+ N ++ + +K TL
Sbjct: 303 MEALPEIPVRNGKKKTVSLVYEEQFHYLDTTGQNIGNVKRKLRIHREVKAPVKKNTLAGE 362
Query: 332 KIT 334
I
Sbjct: 363 MIY 365
>gi|222148588|ref|YP_002549545.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
[Agrobacterium vitis S4]
gi|221735574|gb|ACM36537.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
[Agrobacterium vitis S4]
Length = 411
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 84/358 (23%), Positives = 147/358 (41%), Gaps = 23/358 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE------------TNKLPYYTLLDTNTGHVIAENYPDH 49
R+ +V++A + A+ + L++ TG V+ E D
Sbjct: 20 RKIVVLLAALFYGASLQTSAFAQAAATDAATPAVYATEAKQVLLIEAETGSVLFEKNSDQ 79
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTL 104
P+ ASL+K+M A VV LK + L+ +S+ A + S + +
Sbjct: 80 PFTSASLSKMMVAEVVLDALKSGRLTLSQDFPVSEFAWRTGGAPSRTATMFAAVRSRVPV 139
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ LK ++V+ AND + +AE + +E+ FV+ MN + LGL +HF NA G+ G+
Sbjct: 140 EALLKGVMVQMANDACLILAEGMAGSEQGFVKLMNERAAALGLKDSHFANATGLPDPGNK 199
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
+ RDM L+ +K+++P + + E N N +G G DG+ GF
Sbjct: 200 VSLRDMITLAQALKSNYPDFYALYAQPDFEWNKIFQRNRNRLLGQSPGVDGLAAGFADGE 259
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFY 281
G++IVASA Q L + G+ +R + +A L+ GF R+ +
Sbjct: 260 GYSIVASAQQNGVRLYLGLAGSESDKSRQEDAAKALAWGFSAFEKRRLFEAGQVIGEASV 319
Query: 282 QQNLSNEVPNISE---EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+VP +S +V ++ +++ LK + K
Sbjct: 320 YGGEPAQVPLVSPQPVDVYLPVGASDKLEAKVIYPWPLRPGVAQGQQVGHLKVMLGDK 377
>gi|254456113|ref|ZP_05069542.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083115|gb|EDZ60541.1| serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Pelagibacter
sp. HTCC7211]
Length = 383
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 88/343 (25%), Positives = 154/343 (44%), Gaps = 16/343 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L+ I + + F + K LLD ++ ++ E PD PAS+TK+MT
Sbjct: 3 KKILIYIILCLPLTNFA--NANFDVKARTAILLDYHSDEILYEKDPDRKIFPASMTKIMT 60
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ + F +K + L +S+NA S+ G ++++N LK +I+ S ND
Sbjct: 61 SIIAFDLIKNGELSLDDKFIVSENAWRLSESGYSSMFIMVGDQISVENLLKGIIISSGND 120
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
VA+AE + TE +F M +K +G+ T+F N+ G+ + +T RD+ I+S +
Sbjct: 121 ACVALAEGIAGTEDEFAILMTEKAKEIGMENTNFSNSSGINSPDNLSTVRDIMIMSKYLI 180
Query: 179 TDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
++P Y YF+ K N N + L ADG+KTG+ +++ +S
Sbjct: 181 KNYPDYYKYFKEKKFTWDRTGGDPITQGNRNPLLYKNLDADGIKTGYLSYEKYSLASSIN 240
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEV 289
+ + LIAV G +N+R++ S LL+ G N + D + +
Sbjct: 241 RNGRRLIAVGSGFNSKNSRSRESIKLLTYGLTNYDLVQITKANEPFYKIDVWLGKENFVQ 300
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKD--KESHFIDFEKITLLK 330
+++ T K+ ++ D E+ EKI LK
Sbjct: 301 SYARQDIYKTIKKAKKKLLKVSVNYDGPIEAPIKKNEKIATLK 343
>gi|254560273|ref|YP_003067368.1| serine-type D-alanyl-D-alanine carboxypeptidase [Methylobacterium
extorquens DM4]
gi|254267551|emb|CAX23393.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor
[Methylobacterium extorquens DM4]
Length = 501
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 97/295 (32%), Positives = 155/295 (52%), Gaps = 6/295 (2%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ L+ + A P ++D +G V+ PW PAS+TKLMT YV
Sbjct: 9 LIGSLTALGLMAGAASAVTAPI-LVVDAESGKVLYSQGATDPWYPASITKLMTTYVALDM 67
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+++ K L T +T+S A+ PPS FK G+ +TLDNALK+++VKSAND++ AI E L
Sbjct: 68 VRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSWAIGEGLG 127
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ + F MN T+ +G+ + + N +G+ + +T+ARDMA+L+ + DFP + F
Sbjct: 128 GSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDFPNQQNLF 187
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
I ++ N N +G + GADGMKTGF C+ GFN+VA+A +G + +I V++G
Sbjct: 188 SISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIITVVMGQPS 247
Query: 249 RNTRNKVSASLLSMGF-YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
R+ +A L GF + + + P++ +C +K
Sbjct: 248 ARERDIKAADLFDYGFGQSAGWTAPTLESLPP----SNVAAPPDMRPYICDKRKP 298
>gi|218529374|ref|YP_002420190.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
chloromethanicum CM4]
gi|218521677|gb|ACK82262.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
chloromethanicum CM4]
Length = 496
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 97/295 (32%), Positives = 155/295 (52%), Gaps = 6/295 (2%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ L+ + A P ++D +G V+ PW PAS+TKLMT YV
Sbjct: 9 LIGSLTALGLMAGAASAVTAPI-LVVDAESGKVLYSQGATDPWYPASITKLMTTYVALDM 67
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+++ K L T +T+S A+ PPS FK G+ +TLDNALK+++VKSAND++ AI E L
Sbjct: 68 VRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSWAIGEGLG 127
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ + F MN T+ +G+ + + N +G+ + +T+ARDMA+L+ + DFP + F
Sbjct: 128 GSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDFPNQQNLF 187
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
I ++ N N +G + GADGMKTGF C+ GFN+VA+A +G + +I V++G
Sbjct: 188 SISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIITVVMGQPS 247
Query: 249 RNTRNKVSASLLSMGF-YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
R+ +A L GF + + + P++ +C +K
Sbjct: 248 ARERDIKAADLFDYGFGQSAGWTAPTLESLPP----SNVAAPPDMRPYICDKRKP 298
>gi|163850650|ref|YP_001638693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
extorquens PA1]
gi|163662255|gb|ABY29622.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
extorquens PA1]
Length = 501
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 97/295 (32%), Positives = 155/295 (52%), Gaps = 6/295 (2%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ L+ + A P ++D +G V+ PW PAS+TKLMT YV
Sbjct: 9 LIGSLTALGLMAGAASAVTAPI-LVVDAESGKVLYSQGATDPWYPASITKLMTTYVALDM 67
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+++ K L T +T+S A+ PPS FK G+ +TLDNALK+++VKSAND++ AI E L
Sbjct: 68 VRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSWAIGEGLG 127
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ + F MN T+ +G+ + + N +G+ + +T+ARDMA+L+ + DFP + F
Sbjct: 128 GSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDFPNQQNLF 187
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
I ++ N N +G + GADGMKTGF C+ GFN+VA+A +G + +I V++G
Sbjct: 188 SISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIITVVMGQPS 247
Query: 249 RNTRNKVSASLLSMGF-YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
R+ +A L GF + + + P++ +C +K
Sbjct: 248 ARERDIKAADLFDYGFGQSAGWTAPTLESLPP----SNVAAPPDMRPYICDKRKP 298
>gi|27376431|ref|NP_767960.1| penicillin-binding protein [Bradyrhizobium japonicum USDA 110]
gi|27349571|dbj|BAC46585.1| bll1320 [Bradyrhizobium japonicum USDA 110]
Length = 487
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 98/281 (34%), Positives = 156/281 (55%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L++ ++G V+ + PW PAS+TK+MTAYV +K+ + L T +T+S A+
Sbjct: 34 EALLLIEADSGKVLQADNATIPWYPASVTKIMTAYVTLKAVKDGRLTLDTLLTVSPTAAS 93
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
PS F+ G+ +T+DNALK+++VKSAND+AV +AE + + F MN+T+K LG++
Sbjct: 94 QSPSKMGFRPGTQLTVDNALKMMMVKSANDMAVVLAEGVGGSIDGFSVMMNDTAKKLGMT 153
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
T ++N +G+ G T+ARD+ IL+ D P+Y ++ I + + N N +G
Sbjct: 154 QTSYVNPNGLPADGQITSARDLGILARSFLRDLPEYEYFVHIPAIRFGKRVTGNFNKLIG 213
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ GADG KTGF CASG+N+VASA + + LIAV+LGA R +A LL GF
Sbjct: 214 RYPGADGFKTGFICASGYNLVASATRNGRRLIAVVLGANSGTARAVKAAQLLERGFSQDN 273
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
+ + PN+ +++C ++ +
Sbjct: 274 LSWLRPSLGTVENLVPVDASPPNLRDDMCGGHRKRPASDDD 314
>gi|32490923|ref|NP_871177.1| hypothetical protein WGLp174 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166129|dbj|BAC24320.1| dacA [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 410
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 92/354 (25%), Positives = 154/354 (43%), Gaps = 20/354 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLS---------IAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
++FL I + +F + Y L+D +G V+AE D
Sbjct: 17 KKFLEIFKFITIIYLFIGKTYSEQYNVEIKPPKINAESYILIDYYSGQVLAEMNADSKRL 76
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE------YPPSNSTFKKGSTMTLDN 106
PASLTK+MT+Y++ ++K + + ISK + S+ K G +++ +
Sbjct: 77 PASLTKMMTSYIIGMYIKSGHIKSSDLVKISKESWMLGNPSLKGSSSMFLKPGDLVSISD 136
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VAIA + ++ FV+ MNN +K L L THF N HG+ G +T+
Sbjct: 137 LSRGIILQSGNDACVAIANYISGNQESFVELMNNYAKKLKLKNTHFKNVHGLDNAGQFTS 196
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASG 225
ARDM+I+ + D + ++ K + N N L DG+KTG T +G
Sbjct: 197 ARDMSIIGTYLIKDVHEEYIKYKEKEFTYNNIRQLNRNNLLWDKTLNVDGIKTGHTKLAG 256
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ--- 282
+N+VASAI + LI+VILG N R+ S SLL+ G + + K +
Sbjct: 257 YNLVASAINENMRLISVILGGRSINERDNGSKSLLNWGLRSFNTILFLRSNEKFVKKYIF 316
Query: 283 -QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ T +++ + +K + K
Sbjct: 317 FGKTNYAYLGVKNDIYITVPRGKEKEIKIEYIFFDSTLKAPLKKYQQVGKIFFK 370
>gi|307292800|ref|ZP_07572646.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingobium
chlorophenolicum L-1]
gi|306880866|gb|EFN12082.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingobium
chlorophenolicum L-1]
Length = 387
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 77/349 (22%), Positives = 138/349 (39%), Gaps = 20/349 (5%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++ + +LS + T++ P L D ++G V+ + + PAS+ K+
Sbjct: 1 MKKSVAALLFVGLLSQPLTAAAPPYTSEAPIAYLKDMSSGAVLYDKGGETRMPPASMAKM 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP-----PSNSTFKKGSTMTLDNALKLLIVK 114
MTA+V F +++ L T+ + S G ++++N L ++
Sbjct: 61 MTAHVAFRLIQKGDLKLDQKFTVRPETWQQWHGPQAGSTMFLSPGEQVSVENLLHGIVTL 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAIL 173
S ND V +AE + TE+ FV MN +K LGL ++F ++G G Y TA D+A L
Sbjct: 121 SGNDACVVLAEGIAGTEQAFVALMNQEAKRLGLKNSNFGTSNGWPDEGVTYVTAADLASL 180
Query: 174 SWRIKTDFPQYM-HYFQIKGLEIKGKK------YPNTNWAVGTFLGADGMKTGFTCASGF 226
+ + P ++ + N N +G GADG+KTG T +G+
Sbjct: 181 AEATIEETPSLYKKFYATRAFTWGKTMGGADIEQGNRNPILGKVAGADGLKTGHTEEAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
SA Q + L+ V+ G N R S + GF + +
Sbjct: 241 GFTGSAEQEGRRLVMVVAGLTSANQRIAESVRFMDWGFRAWKAQPLFKKGQTVETAEVQL 300
Query: 287 NEVPNISEE------VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
++ V + + ++ ++ +KI L
Sbjct: 301 GSATRVALVAPQDMAVTLPRAASSGISVKVAYTGPIKAPIAKGQKIAQL 349
>gi|225864479|ref|YP_002749857.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus 03BB102]
gi|225790585|gb|ACO30802.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus 03BB102]
Length = 424
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 78/375 (20%), Positives = 139/375 (37%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ II + L + A + L++ N+G ++ E D
Sbjct: 7 KRFIAIITVLTLFCSITVISGSASAETVSAIEVEAGSAVLVEANSGKILYEKNADELLAI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V ++ K + IS+ A + S + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 127 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 186
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N NW
Sbjct: 187 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQQGGKYPIDMTNFNWMLKGL 246
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G +A + LI+V++ A R + L GF N
Sbjct: 247 IKQYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIKANSHAARFDETKKLYDYGFAN 306
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
RK + V + V + + + +
Sbjct: 307 FEVRKVNEKDSVVNGHETVRIANAKDKDVVVQTKQAVSLPILKSNKDVYKKEFKVLNKEQ 366
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 367 EAPIKKGVTISKMII 381
>gi|240137704|ref|YP_002962175.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor
[Methylobacterium extorquens AM1]
gi|240007672|gb|ACS38898.1| serine-type D-alanyl-D-alanine carboxypeptidase precursor
[Methylobacterium extorquens AM1]
Length = 501
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 97/295 (32%), Positives = 155/295 (52%), Gaps = 6/295 (2%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ L+ + A P ++D +G V+ PW PAS+TKLMT YV
Sbjct: 9 LIGSLTALGLMAGAASAVTAPI-LVVDAESGKVLYSQGATDPWYPASITKLMTTYVALDM 67
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+++ K L T +T+S A+ PPS FK G+ +TLDNALK+++VKSAND++ AI E L
Sbjct: 68 VRQGKVSLDTLLTVSPAAAAEPPSKMGFKPGTQITLDNALKIIMVKSANDVSWAIGEGLG 127
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ + F MN T+ +G+ + + N +G+ + +T+ARDMA+L+ + DFP + F
Sbjct: 128 GSVEGFADMMNETAHRIGMRESRWYNPNGLPEPRQWTSARDMAVLARALMRDFPNQQNLF 187
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
I ++ N N +G + GADGMKTGF C+ GFN+VA+A +G + +I V++G
Sbjct: 188 SISAIQFGKSVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRGGRRIITVVMGQPS 247
Query: 249 RNTRNKVSASLLSMGF-YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
R+ +A L GF + + + P++ +C +K
Sbjct: 248 ARERDIKAADLFDYGFGQSAGWTAPTLESLPP----SNVAAPPDLRPYICDKRKP 298
>gi|325982052|ref|YP_004294454.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas sp. AL212]
gi|325531571|gb|ADZ26292.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrosomonas sp. AL212]
Length = 415
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 99/333 (29%), Positives = 170/333 (51%), Gaps = 10/333 (3%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
++ I + +L L+ ++D +TG V+ E+ D PASLTK+MT
Sbjct: 12 IYVFAIFLLLLIVSDSALANPR----YSSIVIDADTGAVLHESNADANRYPASLTKMMTL 67
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++++K + T + +S +A+ P +N + G ++++ +A+ LIV+SAND+A
Sbjct: 68 YMLFEAMEQRKMTVDTRMPVSTHAAAMPQTNIGLRTGDSISVRDAIPALIVRSANDVAAV 127
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE+L K+E F + M + ++ LG+ +T F NA G+ TTARDM LS R+ DFP
Sbjct: 128 VAEALGKSEANFGRMMTDKARQLGMRSTTFRNASGLPNLEQKTTARDMVTLSTRLMKDFP 187
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+Y HYF + KG Y + N V G DG+KTGF ASGFN+ SA +G++ ++AV
Sbjct: 188 KYYHYFSTQSFSYKGITYNSHNRMVRNTSGVDGLKTGFIRASGFNVATSAKRGNRRVVAV 247
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
++G R++ A L+ F N I+ + V + ++
Sbjct: 248 VMGGNTAAARDQHMAQLIDRSFNQ------GNRTIQVASNSKNARAVAVTAVKMNAPTPA 301
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ Y Q K ++ + ++ ++ K
Sbjct: 302 LKPYPEQPKASESIVTQQYVVPPVSAQPVQLQK 334
>gi|187932841|ref|YP_001886556.1| penicillin-binding protein DacF [Clostridium botulinum B str.
Eklund 17B]
gi|187720994|gb|ACD22215.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B
str. Eklund 17B]
Length = 396
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 23/352 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
+++ + + +L+ I + + + L++ TG V+ E P
Sbjct: 5 IKRIISFTLIFVLTIILIPIGAVNASMLEDEVKADGMNVEAKSALLIEPTTGKVVYEKNP 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D + PAS+TK+MT + + K L +T S+NA + S G +++
Sbjct: 65 DEKFAPASVTKIMTMLLTMEAIDNGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRSVEEL 124
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
LK + + S ND AVA+AE L TE FV MN ++ LG+ T F N +G+ GH +TA
Sbjct: 125 LKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVFKNCNGLPADGHLSTA 184
Query: 168 RDMAILSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
RD++++S + + I + N N V F G DG+KTGFT
Sbjct: 185 RDISLMSIELLKHPTILKYTGTYMDSISEGRKSPIELVNHNKLVRFFEGCDGLKTGFTNE 244
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
+ + I A+A + ++ VI+GA RN+ + LL+ GF +K ++
Sbjct: 245 AKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGFSKYEGKKIVSKDEDVEKVL 304
Query: 284 NLSNE----VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ +++ + N K ++ ++ ++
Sbjct: 305 MDKQTDRFFMAKAKDDLTAILPKGSNGEISNKIVIEELKPE--YKMGDIVGK 354
>gi|228943820|ref|ZP_04106207.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228815844|gb|EEM62078.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
Length = 443
Score = 184 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 312 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQE 371
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 372 APIKKGAALGKMVI 385
>gi|87199959|ref|YP_497216.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium
aromaticivorans DSM 12444]
gi|87135640|gb|ABD26382.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium
aromaticivorans DSM 12444]
Length = 391
Score = 184 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 88/352 (25%), Positives = 139/352 (39%), Gaps = 23/352 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------------NKLPYYTLLDTNTGHVIAENYPD 48
MR V +A ++ P + A P L+D+ +G +
Sbjct: 1 MRLKFVAVAAGLIVGAMPVQAAAPEVGLDAAMTSLPRIDAPIALLVDSGSGRTLYARDVH 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLD 105
+ PAS+TK+MT+YV F +++ K L I+I S + T+
Sbjct: 61 RRFVPASITKIMTSYVAFDLVRKGKLRLDQRISIRPETFRKWKNVGSTMFLPAEAQPTVA 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-Y 164
++ ++ SAND V +AE + F + MN + LG+ +HF +G + G Y
Sbjct: 121 ELIEGIVTVSANDACVVLAEGAVGSVPAFTRLMNEAALQLGMRDSHFNTPNGWMDEGQTY 180
Query: 165 TTARDMAILSWRIKTDFPQYMH-YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
TA D+A LS + T FP ++ + G PN N G GADG+KTGFT
Sbjct: 181 VTADDLAKLSGALMTRFPDLYKRFYGHATMTWNGITQPNHNPLYGHTEGADGVKTGFTNE 240
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DF 280
+G+ V SA +G + LI V+ G R S +L+ GF
Sbjct: 241 AGYGFVGSAERGGRRLIMVLGGYDRPIDRTNQSRALIEWGFSAWESHPLFKAGAPVGVAE 300
Query: 281 YQQNLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
Q +V ++ V T Q + Y ++ + E + L
Sbjct: 301 VQGGAERQVSLVAPRALGVTTPQGQKPRYTLSIRYKGPLRAPIAKGETVASL 352
>gi|56418545|ref|YP_145863.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus kaustophilus
HTA426]
gi|261417510|ref|YP_003251192.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61]
gi|319765168|ref|YP_004130669.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52]
gi|461913|sp|Q05523|DACA_BACST RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
Short=CPase; Short=DD-carboxypeptidase;
Short=DD-peptidase; AltName: Full=Penicillin-binding
protein 5; Short=PBP-5; Flags: Precursor
gi|580849|emb|CAA48577.1| D-alanine carboxypeptidase [Geobacillus stearothermophilus]
gi|56378387|dbj|BAD74295.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus kaustophilus
HTA426]
gi|261373967|gb|ACX76710.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC61]
gi|317110034|gb|ADU92526.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. Y412MC52]
Length = 452
Score = 184 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 82/382 (21%), Positives = 143/382 (37%), Gaps = 46/382 (12%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFL------SIAETNKLPYYTLLDTNTGHVIAENYPDH 49
MR+ ++++ + PF S + L+D TG ++ E D
Sbjct: 1 MRRRKQNWLFWLLSICLCLTFGPFQQTVKAESAPLDIRADAAILVDAQTGRILYEKNIDT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS+TK+MT Y++ +K K+ T S + ++
Sbjct: 61 VLGIASMTKMMTEYLLLDAIKAKRVKWDQMYTPSDYVYRLSQDRALSNVPLRKDGKYTVR 120
Query: 110 LLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV------- 158
L A A ++ + +EK FV+ MN+ +K LGL F+NA G+
Sbjct: 121 ELYEAMAIYSANGATVAIAEIIAGSEKNFVKMMNDKAKELGLKDYKFVNATGLSNKDLKG 180
Query: 159 -------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA 206
+ +AR MA+L++R+ D P+ + I + K N NW
Sbjct: 181 FHPEGTSTNEENVMSARAMAMLAYRLLKDHPEVLKTASIPHKVFREGTKDEIKMDNWNWM 240
Query: 207 ----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL------DRNTRNKVS 256
V + G DG+KTG+T +G +A + LI+V++ A + R K +
Sbjct: 241 LPGLVYGYEGVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVMNAKDASGKTTKEARFKET 300
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
L + GF + + ++ L E T K + +E + K
Sbjct: 301 EKLFNYGFNQYSLETLYPKGYQLKGKETLPVVKGKEKEVRVATGKNLDLLVKNGEEKQYK 360
Query: 317 ESHFIDFEKITLLKNKI--TKK 336
+ +D +K+T + KK
Sbjct: 361 PVYVLDKKKMTKEGKLVAPLKK 382
>gi|301051750|ref|YP_003789961.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis CI]
gi|300373919|gb|ADK02823.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus biovar
anthracis str. CI]
Length = 435
Score = 184 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 4 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 63
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 64 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 123
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 124 AMAIFSANGATIALAEAIASKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 183
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 184 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 243
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 303
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 304 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQE 363
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 364 APIKKGAALGQMVI 377
>gi|229074074|ref|ZP_04207123.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock4-18]
gi|229094734|ref|ZP_04225742.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-29]
gi|228688672|gb|EEL42542.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-29]
gi|228709037|gb|EEL61161.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock4-18]
Length = 444
Score = 184 bits (465), Expect = 2e-44, Method: Composition-based stats.
Identities = 72/375 (19%), Positives = 141/375 (37%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFMALVTVLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+ E++ E FV+ MN+ +K LGL F+N+ G+
Sbjct: 132 AMAIYSANGATIALGEAVAGKEVNFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGQHPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD+AIL+ + D+P+ + +I + N NW
Sbjct: 192 GTTPDEENKMSARDVAILAQHLIKDYPKTLDTAKIPKKVFQEGGKYPINMDNWNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
V + G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 252 VKQYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESH 319
++ Q+ + E + V + + + + +
Sbjct: 312 FEMKQMYKKDSSVKGQETVRVENAKDKDVAVQTKQVVSLPVPKGSKDVYKTEFKEASKGQ 371
Query: 320 FIDFEKITLLKNKIT 334
+K L +
Sbjct: 372 EAPIKKGVALGQMVI 386
>gi|251780585|ref|ZP_04823505.1| penicillin-binding protein DacF [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243084900|gb|EES50790.1| penicillin-binding protein DacF [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 396
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 23/352 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
+++ + + +L+ I + + + L++ TG V+ E P
Sbjct: 5 IKRIISFTLIFVLTIILMPIGAVNASMLEDQVKAEGMNVEAKSALLIEPTTGKVVYEKNP 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D + PAS+TK+MT + + K L +T S+NA + S G +++
Sbjct: 65 DEKFAPASVTKIMTMLLTMEAVDNGKIKLDDKVTCSENAKKMGGSTMLLDTGEIRSVEEL 124
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
LK + + S ND AVA+AE L TE FV MN ++ LG+ T F N +G+ GH +TA
Sbjct: 125 LKGVAIASGNDAAVALAEYLGGTESDFVGLMNKRAQELGMKNTVFKNCNGLPADGHLSTA 184
Query: 168 RDMAILSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
RD++++S + + I + N N V F G DG+KTGFT
Sbjct: 185 RDISLMSIELLKHPTILKYTGTYMDSISEGRKSPIELVNHNKLVRFFEGCDGLKTGFTNE 244
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
+ + I A+A + ++ VI+GA RN+ + LL+ GF +K ++
Sbjct: 245 AKYCISATATRNGVRMLTVIMGAPTYKIRNRDAGILLNHGFSKYEGKKIVSKDEDVEKVL 304
Query: 284 NLSNE----VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ +++ + N K ++ ++ ++
Sbjct: 305 MDKQTDRFFMAKAKDDLTAILPKGSNGEISKKIVIEELKPE--YKMGDIVGK 354
>gi|229021621|ref|ZP_04178209.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH1272]
gi|228739667|gb|EEL90075.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH1272]
Length = 428
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 142/367 (38%), Gaps = 37/367 (10%)
Query: 5 LVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ IA +ML SN A + L++ N+G ++ + D + AS+TK+M+
Sbjct: 4 VLTIACSMLVPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMS 63
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSAN 117
Y+V + + K + +S+ A S + T+ + + + SAN
Sbjct: 64 EYLVNEAVAKGKLKWDQKVKVSEYAYNISQDRSLSNVPLRNGESYTVKELYEAMAIYSAN 123
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
+A+AE++ E FV+ MN+ SK GL F+N+ G+ +
Sbjct: 124 GATIALAEAVAGKEVDFVKMMNDKSKEFGLKNYKFVNSTGLTNKDLKGHHPEGTTPDEEN 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWA----VGTFLGAD 214
+ARD+AIL+ R+ DFP+ + +I + + PN NW + + G D
Sbjct: 184 KMSARDVAILAQRLIQDFPKTLDIAKISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVD 243
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G+KTG T +G + + I+V++ R + L GF N +K
Sbjct: 244 GLKTGSTPEAGDCFTGTIERNGMRFISVVIKTNSHTARFDETKKLYDYGFANFEMKKMYE 303
Query: 275 YIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
++ + E + V + + + + + +K
Sbjct: 304 KGSSVKGKETVRVENAKDKDVAVQTKQAVSLPVPKGSKDVYKTEFKEGNKGQEAPVKKGV 363
Query: 328 LLKNKIT 334
L +
Sbjct: 364 SLGQMVI 370
>gi|294011645|ref|YP_003545105.1| D-alanyl-D-alanine carboxypeptidase [Sphingobium japonicum UT26S]
gi|292674975|dbj|BAI96493.1| D-alanyl-D-alanine carboxypeptidase [Sphingobium japonicum UT26S]
Length = 387
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 78/349 (22%), Positives = 140/349 (40%), Gaps = 20/349 (5%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++ + +LS + +++ P + D ++G V+ D PAS+ K+
Sbjct: 1 MKKSIAALLFVGLLSTPLTAAAPPYSSEAPIAYMKDLSSGAVLYNKGGDTRIPPASMAKM 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP-----PSNSTFKKGSTMTLDNALKLLIVK 114
MTA+V F +++ L T+ + S G ++++N L ++
Sbjct: 61 MTAHVAFRLIQKGDLKLEQKFTVRPETWQQWHGPQAGSTMFLSPGEQVSVENLLHGIVTL 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAI 172
S ND V +AE + TE+ FV MN +K LGL ++F ++G G + T A A+
Sbjct: 121 SGNDACVVLAEGIAGTEQAFVALMNQEAKRLGLKNSNFGTSNGWPDEGVTYVTAADLAAL 180
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNTNWAVGTFLGADGMKTGFTCASGF 226
I+ Y ++ + N N +G GADG+KTG T +GF
Sbjct: 181 AEATIEETPNLYKKFYATRSFTWGKTMGGADIEQGNRNPILGKVAGADGLKTGHTQEAGF 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQ 283
SA Q + L+ V+ G N R S + GF + Q
Sbjct: 241 GFTGSAEQEGRRLVMVVAGLTSFNQRIAESVRFMDWGFRAWKAQPLFKKGQTVETAEVQL 300
Query: 284 NLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ VP ++ + V + N + ++ ++ ++I L
Sbjct: 301 GSATSVPLVAPQDMAVTLPRAASSNISVKVAYTGPIKAPIAKGQRIAQL 349
>gi|229100800|ref|ZP_04231618.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-28]
gi|228682607|gb|EEL36666.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-28]
Length = 430
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 72/367 (19%), Positives = 139/367 (37%), Gaps = 37/367 (10%)
Query: 5 LVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ +A +ML SN A + L++ N+G ++ + D + AS+TK+M+
Sbjct: 6 VLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMS 65
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSAN 117
Y+V + + K I +S+ A + S + T+ + + + SAN
Sbjct: 66 EYLVHEAVDKGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSAN 125
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
+A+ E++ E FV+ MN+ +K LGL F+N+ G+ +
Sbjct: 126 GATIALGEAVAGKEVNFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGQHPEGTTPDEEN 185
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGAD 214
+ARD+AIL+ + D+P+ + +I + N NW V + G D
Sbjct: 186 KMSARDVAILAQHLIKDYPKTLDTAKIPKKVFQEGGKYPINMDNWNWMLKGLVKQYDGVD 245
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G+KTG T +G + + I+V++ R + L GF N ++
Sbjct: 246 GLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQMYK 305
Query: 275 YIIKDFYQQ-------NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
Q+ + + V + + + + + +K
Sbjct: 306 KDSSVKGQETVRVGNAKDKDVAVQTKQVVSLPVPKGSKDVYKAEFKEASKGQEAPIKKGV 365
Query: 328 LLKNKIT 334
L +
Sbjct: 366 ALGQMVI 372
>gi|218233929|ref|YP_002364864.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
B4264]
gi|218161886|gb|ACK61878.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
B4264]
Length = 438
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 74/374 (19%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L SN A + L++ N+G ++ + D +
Sbjct: 7 KRFIALVTVLTLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFGMSNWNWMLKGLV 246
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 307 EVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQE 366
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 367 APIKKGAALGQMVI 380
>gi|56697577|ref|YP_167946.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria pomeroyi DSS-3]
gi|56679314|gb|AAV95980.1| D-alanyl-D-alanine carboxypeptidase [Ruegeria pomeroyi DSS-3]
Length = 388
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 82/337 (24%), Positives = 143/337 (42%), Gaps = 10/337 (2%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++A+ M P + +LD +TG V+ D PAS++KLMT YV F
Sbjct: 9 LLALGMALTALPGFAY--DTSARAAYVLDQSTGTVLLTKNADEALPPASMSKLMTLYVTF 66
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L++ + L + +S++A Y S + +++ L+ +IV S ND IAE+
Sbjct: 67 EALRDGRLTLDERLPVSQHAMSYGGSTMFLNTTDRVRVEDLLRGIIVLSGNDACAVIAEA 126
Query: 127 LCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
L E F + M ++ +G++ + F N++G GH + D+A+L+ R+ TDFP+Y
Sbjct: 127 LSPDGTEAGFARFMTKRAQQMGMTRSTFANSNGWPAAGHLMSVHDLAVLANRLITDFPEY 186
Query: 185 MHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
F N N + +GADG+KTG T +G+ +V SA QGD+ +I
Sbjct: 187 YPLFAETEFAFDGRAPSNVRNRNPLLKLDIGADGLKTGHTAEAGYGLVGSARQGDRRVIF 246
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEEVCT 298
V+ G R + + ++++ F + + V + E +
Sbjct: 247 VLTGLESEARRAEEAEAIVNWSFRHFATKTVARADAPVAQAQVWMGAKQSVGLVPAEDLS 306
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ E K L + K
Sbjct: 307 LLLPVLSDKRIEAEVVYDGPINAPIAKGQQLAELVIK 343
>gi|228908234|ref|ZP_04072080.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis IBL 200]
gi|228851432|gb|EEM96240.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis IBL 200]
Length = 442
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 73/375 (19%), Positives = 135/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ + D
Sbjct: 12 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYQKNADESLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 132 AMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLE 191
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFPQ ++ +I + N NW
Sbjct: 192 GTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ + V + V + + + +
Sbjct: 312 FEVKNVYGKDSVVKGHETVRVANAKEKDVVVQTKQAVSLPMPKGNKDGYKKEFKVSNKEP 371
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 372 EAPIKKGVTISKIII 386
>gi|303238725|ref|ZP_07325258.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
cellulolyticus CD2]
gi|302593844|gb|EFL63559.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetivibrio
cellulolyticus CD2]
Length = 399
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 83/328 (25%), Positives = 149/328 (45%), Gaps = 13/328 (3%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ S + ++D +G V+ E + AS TK+MTA V
Sbjct: 36 IFSTEVSNAAGSKTPKIEAGAAIVIDMKSGRVLYEKNAYSTRSIASTTKIMTAIVAIEKG 95
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K L + +SK A+ S K+G ++L L L++ S ND A+AIAE +
Sbjct: 96 K-----LDNKVKVSKRAASVRGSVIHLKEGEELSLRELLYGLMLNSGNDAAIAIAEHIGG 150
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+ ++F Q MN+ ++ LGL T F HG+ GHY+TA ++A ++ + +
Sbjct: 151 SVEEFAQMMNDKARELGLKNTQFKTPHGLDTPGHYSTAYELAQIARYALGN-STFSQIVG 209
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ I G+ TN +G + GADG+KTG+T +G +VASA + + +I+V+L R
Sbjct: 210 TQSTSITGRSLYTTNEMLGAYPGADGVKTGYTGQAGRCLVASATRNNMRIISVVLNCHSR 269
Query: 250 NTRNKVSASLLSMGFYNKTDRKKIN------YIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+ R + S ++L F N K ++ + + + +P EV T++E
Sbjct: 270 SVRAQSSKAILDYAFNNYKLYKLLDSEENVGKLPVVKGKGEIVPIIPVEGLEVALTEEEK 329
Query: 304 INYNTQMKEAKDKE-SHFIDFEKITLLK 330
+ ++ +K + ++ ++
Sbjct: 330 NSLKEELYLYNNKLMAPVHPNVEVGYIR 357
>gi|260773274|ref|ZP_05882190.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP
69.14]
gi|260612413|gb|EEX37616.1| D-alanyl-D-alanine carboxypeptidase [Vibrio metschnikovii CIP
69.14]
Length = 347
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 82/310 (26%), Positives = 139/310 (44%), Gaps = 9/310 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS- 92
+D ++G ++AE + +PASLTK+MT+YV+ L L + IS+NA
Sbjct: 1 MDYHSGKILAEKEMNTKLSPASLTKMMTSYVIGQELNRGNISLDDDVVISENAWAKNYPD 60
Query: 93 --NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G+++ + + K +I++S ND VA+AE + +E FV MN + +L ++ T
Sbjct: 61 SSKMFIEVGTSVKVRDLNKGIIIQSGNDACVAMAEHVAGSEDAFVDLMNAWASSLNMTNT 120
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGT 209
HF N HG+ Y+T DMA+L + D P + + G N N
Sbjct: 121 HFANVHGLDHPELYSTPYDMALLGQALIRDVPDEYALYAEQKFTYNGITQYNRNGLLWDK 180
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ DG+KTG T +G+++V+SA +G+ LIAV++G D N+R S LLS GF
Sbjct: 181 SMNVDGIKTGHTTNAGYSLVSSATEGNMRLIAVVMGTKDINSRKTESKKLLSYGFRFFET 240
Query: 270 RKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ + + + ++ T + +KE K
Sbjct: 241 VAPHKAGETFVNETIWMGDKPTVALGVKQDTYVTLPRGQTKDLTASFVLEKE-LKAPINK 299
Query: 326 ITLLKNKITK 335
++ +
Sbjct: 300 GDVVGTLYYQ 309
>gi|229027860|ref|ZP_04184018.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH1271]
gi|228733452|gb|EEL84276.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH1271]
Length = 443
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 145/374 (38%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALLTMLTLACSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G T T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVAKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGTYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+ E++ E FV+ MN+ +K LGL F+N+ G+
Sbjct: 132 AMAIFSANGATIALGEAIAGKEVDFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGMHPA 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW
Sbjct: 192 GTTPDEENKMSAKDVATLAQHLLKDYPKVLDTAKIPNKEFRPEKEKFQMLNWNWMLKGLS 251
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R R + L GF N
Sbjct: 252 KAYDGVDGLKTGSTPEAGECFTGTVERNGMRFISVVIKTNSRQARFDETKKLYDYGFANF 311
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + V + + + + +
Sbjct: 312 EMKQLYKKDSSVKGQETVRVENAKDKDVAVQTKQAVSLPVPKGSKNVYKTELKEASKGQE 371
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 372 APIKKGAALGQMVI 385
>gi|319781232|ref|YP_004140708.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
ciceri biovar biserrulae WSM1271]
gi|317167120|gb|ADV10658.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
ciceri biovar biserrulae WSM1271]
Length = 387
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 114/332 (34%), Positives = 176/332 (53%), Gaps = 8/332 (2%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R FL + + + +A + D +G ++ W PASL+KLMT
Sbjct: 4 RHFLKLFSAGTI----ALSVVAGPALANPVVVFDLGSGKILQHQDAFKRWYPASLSKLMT 59
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
AYV F + + L +PI ++K+++ PPS FK GS M LDNALK+++VKSANDIA+
Sbjct: 60 AYVTFRAIAAGEVQLDSPIKVTKHSAAEPPSKMGFKPGSVMRLDNALKMMLVKSANDIAM 119
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+ E++ ++ F MN + LG++ THF+N +G+ YTTARD+A+L I+ +F
Sbjct: 120 AVGENVGGSQAAFADRMNAEATRLGMNGTHFVNPNGLYSPDQYTTARDLAVLVMAIRREF 179
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
PQY+ +F I+GL + K PN N +G + GADGMKTGF C SGFN++ SA + ++L+A
Sbjct: 180 PQYVPWFSIEGLAVGKKAIPNYNLLIGRYPGADGMKTGFVCPSGFNMIGSATRNGRTLVA 239
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301
V+LG TR + +A LL GF + + + ++ +EVC +
Sbjct: 240 VVLGEKSAVTRAETAAKLLDQGFD---TPVAGSATVTTLAPYGDTVSPNDMQDEVCKKKT 296
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
AK+ EK+ + +
Sbjct: 297 PQEQSEAPPAAAKNVPKSPYQ-EKLDHVPTLV 327
>gi|266624787|ref|ZP_06117722.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
gi|288863335|gb|EFC95633.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
Length = 410
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 87/323 (26%), Positives = 142/323 (43%), Gaps = 14/323 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + P L++ +TG VI E D +PAS+TK+MT ++F L K +T + S
Sbjct: 50 PSIQAPSALLMEASTGQVIYEKDADTKRSPASITKIMTLILIFDALDSGKIKMTDEVVTS 109
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+A S ++G T T++ +K ++V S ND +VA+AE + TE++FV+ MN +
Sbjct: 110 AHAKSMGGSQVFLEEGETQTVETMIKCIVVASGNDASVAMAEYIAGTEEEFVKMMNERAA 169
Query: 144 NLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--- 199
LG++ THF + G+ H TTARD+A++S + +PQ +Y I I
Sbjct: 170 GLGMTNTHFEDCCGLTESPDHVTTARDIALMSRELINKYPQIHNYSTIWMENITHVTKQG 229
Query: 200 -----YPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
NTN + T G+KTG T + + + A+A + LIA I+ A D R
Sbjct: 230 TKEFGLSNTNKLLKMATNFQVTGLKTGSTSLAKYCLSATAEKDGVRLIASIMAAPDYKAR 289
Query: 253 NKVSASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
+ +LL+ G+ N D++ + + +
Sbjct: 290 FADAQTLLNYGYANCRLYEDKEMLPLPELAVDNGVTDSVPLKYGGTFSYLSLNGEDLAAI 349
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
KE ES E+
Sbjct: 350 EKELVLPESIAAPVEEGQSAGVI 372
>gi|229113688|ref|ZP_04243125.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock1-3]
gi|228669754|gb|EEL25159.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock1-3]
Length = 425
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 73/367 (19%), Positives = 140/367 (38%), Gaps = 37/367 (10%)
Query: 5 LVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ +A +ML SN A + L++ N+G ++ + D + AS+TK+M+
Sbjct: 1 MLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMS 60
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSAN 117
Y+V + + K I +S+ A + S + T+ + + + SAN
Sbjct: 61 EYLVHEAVDKGKLKWDQKIKVSEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSAN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
+A+ E++ E FV+ MN+ +K LGL F+N+ G+ +
Sbjct: 121 GATIALGEAVAGKEVNFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGQHPEGTTPDEEN 180
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGAD 214
+ARD+AIL+ + D+P+ + +I + N NW V + G D
Sbjct: 181 KMSARDVAILAQHLIKDYPKTLDTAKIPKKVFQEGGKYPINMDNWNWMLKGLVKQYDGVD 240
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G+KTG T +G + + I+V++ R + L GF N ++
Sbjct: 241 GLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQMYK 300
Query: 275 YIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
Q+ + E + V + + + + + +K
Sbjct: 301 KDSSVKGQETVRVENAKDKDVAVQTKQVVSLPVPKGSKDVYKTEFKEASKGQEAPIKKGV 360
Query: 328 LLKNKIT 334
L +
Sbjct: 361 ALGQMVI 367
>gi|288549826|ref|ZP_05968319.2| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
ATCC 35316]
gi|288317555|gb|EFC56493.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterobacter cancerogenus
ATCC 35316]
Length = 347
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 84/310 (27%), Positives = 134/310 (43%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKGNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K G +T+ + + LIV S ND VA+A+ + + +FV MN+ + L L
Sbjct: 61 FDGSSLMFLKPGDRVTVRDLSRGLIVDSGNDACVALADHVAGGQPQFVNMMNDYVQKLNL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 RDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAV++GA R + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSPKGREDQARKLLHWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
+ ++ K + + ++ + N + K DK+
Sbjct: 241 FDTVQILHNGKKVGTERIWYGDKEQVELGTDQDFWLALPKTEVPNIKAKYVLDKKELEAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 LAAHQRVGEI 310
>gi|228912752|ref|ZP_04076401.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228846879|gb|EEM91882.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 443
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 312 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQE 371
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 372 APIKKGAALGQMVI 385
>gi|28211671|ref|NP_782615.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
gi|28204113|gb|AAO36552.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
Length = 419
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 87/347 (25%), Positives = 147/347 (42%), Gaps = 24/347 (6%)
Query: 1 MRQFLVIIAMAMLS-------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+++++ + LS I S + L+D TG V+ E + P+ P
Sbjct: 8 MKKYILTFLIFFLSFVCINSATINAKTSKPPSVSADGAILMDAKTGKVLYEKNINKPYPP 67
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK+MTA + L + + K S +G + + + L L++
Sbjct: 68 ASTTKIMTALLTLENC-----NLDDEVVVGKKPPLADGSKIFIHEGEKLKVKDLLYALLL 122
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+SAND A A+AE + + F + MN +K LG + T+F+N +G+ H TTA+D+A++
Sbjct: 123 ESANDAAEALAEHIGGSINDFSKLMNKRAKELGCTNTNFVNPNGLYNAKHRTTAQDLALI 182
Query: 174 SWR--IKTDFPQYMHYFQIKGLEIKGKK----YPNTNW-----AVGTFLGADGMKTGFTC 222
D+ + + K K N N + F G +G KTG+T
Sbjct: 183 MKEVSQYEDYRKISNTITYKIKPTNKSKKERPLWNKNKLVQQNSKYYFKGCNGGKTGYTT 242
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
S + V SA +GD LI V++ + T + S +LL+ GF N K +
Sbjct: 243 QSQHSYVVSANRGDFQLIVVLIH-DSKKTFFEDSVNLLNYGFNNFELIKMYSRGDIVTAY 301
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ I+ + KE + +T + + K + I F K +
Sbjct: 302 NEKDLSLNLIARDDFYYIKEKNDPSTAILNLEKKNLNSISFHKGDTI 348
>gi|228918964|ref|ZP_04082345.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228840679|gb|EEM85939.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 443
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 74/374 (19%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTVLTLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 312 EVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQE 371
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 372 APIKKGAALGQMVI 385
>gi|49478184|ref|YP_034369.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
carboxypeptidase) [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329740|gb|AAT60386.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
carboxypeptidase) [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 438
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 7 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 307 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQE 366
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 367 APIKKGAALGQMVI 380
>gi|206972675|ref|ZP_03233615.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
AH1134]
gi|206732395|gb|EDZ49577.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
AH1134]
Length = 438
Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats.
Identities = 74/374 (19%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L SN A + L++ N+G ++ + D +
Sbjct: 7 KRFIALVTVLTLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 307 EVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQE 366
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 367 APIKKGAALGQMVI 380
>gi|296445856|ref|ZP_06887808.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
trichosporium OB3b]
gi|296256684|gb|EFH03759.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
trichosporium OB3b]
Length = 400
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 82/319 (25%), Positives = 135/319 (42%), Gaps = 11/319 (3%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+P+ L+D T V+ E D PAS K+MTA +VF + E + L T
Sbjct: 33 EGFQTSVPHAILVDAGTHTVLLEKAADDFVTPASTVKVMTAEIVFHEIAEGRLKLDDEFT 92
Query: 82 ISKNASEYPPSN-----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+S++A + S +++ ++ L++ S ND A+ +AE + +E+ FV
Sbjct: 93 VSEHAWRSGGAPAGGSAMFLPVNSRAKVEDLIRGLVIVSGNDAAITLAEGVAGSEEAFVG 152
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN + LGL+ + F N G T R+M L+ + +P + YF K
Sbjct: 153 RMNKRASELGLAKSIFGNPWGQAGPDQKVTPREMVQLAAHVIETYPDFYRYFGEKEFTWN 212
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ N N + LGADG+KTG +SGF +V SA+Q D+ LI + GA R + +
Sbjct: 213 KIRQQNRNPLLTMSLGADGLKTGNIDSSGFGLVGSAVQDDRRLIVAVYGAKTAKERAEEA 272
Query: 257 ASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISE---EVCTTQKEIINYNTQM 310
LL GF N +++ S V +S +V + + ++
Sbjct: 273 RKLLQWGFRNFEEKQLFKAGEPVGTAQVYGGDSGAVAVVSPTDVKVLLQRGVSEKLSGKV 332
Query: 311 KEAKDKESHFIDFEKITLL 329
+ K+ L
Sbjct: 333 VYEGPLIAPVAAGAKVAKL 351
>gi|254744208|ref|ZP_05201889.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. Kruger B]
Length = 438
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 187 GXXADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 307 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQE 366
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 367 APIKKGAALGQMVI 380
>gi|94496388|ref|ZP_01302965.1| D-alanyl-D-alanine carboxypeptidase [Sphingomonas sp. SKA58]
gi|94424134|gb|EAT09158.1| D-alanyl-D-alanine carboxypeptidase [Sphingomonas sp. SKA58]
Length = 387
Score = 183 bits (463), Expect = 3e-44, Method: Composition-based stats.
Identities = 81/349 (23%), Positives = 143/349 (40%), Gaps = 20/349 (5%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ +++A +++ + T + P + D ++G V+ + + PAS+ K+
Sbjct: 1 MKKSLAMLLAAGLVAQPVIAAAPPYTTEAPIAYMKDLSSGAVLYDKGGETRIPPASMAKM 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYP-----PSNSTFKKGSTMTLDNALKLLIVK 114
MTA+V F +++ L T T+ + S G ++++N L ++
Sbjct: 61 MTAHVAFRLIQKGDLKLDTKFTVRPETWQQWHGPKAGSTMFLSAGEQVSVENLLHGIVTL 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAIL 173
S ND V +AE + TE+ FV MN K LGL +HF ++G G Y TA D+A L
Sbjct: 121 SGNDACVVLAEGIAGTEQAFVALMNEEGKRLGLKNSHFGTSNGWPDEGVTYVTAEDLATL 180
Query: 174 SWRIKTDFPQYMH-YFQIKGLEIKGKK------YPNTNWAVGTFLGADGMKTGFTCASGF 226
+ + P ++ K N N +G GADG+KTG T +G+
Sbjct: 181 AQATIEETPDLYKRFYATKSFTWGQTMGGSAIEQANRNPILGKIAGADGLKTGHTEEAGY 240
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQ 283
SA Q + L+ V+ G N R K S + GF + Q
Sbjct: 241 GFTGSAEQDGRRLVMVVAGLNSFNGRIKESVRFMDWGFKAWKAQPLFKKGQTVETAEVQL 300
Query: 284 NLSNEVPNISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ VP ++ + V + + ++ ++ ++I L
Sbjct: 301 GSATSVPLVAPQNLAVTLPRTASADVKVKVVYTGPIKAPIAKGQQIAQL 349
>gi|258515621|ref|YP_003191843.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
acetoxidans DSM 771]
gi|257779326|gb|ACV63220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum
acetoxidans DSM 771]
Length = 381
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 92/345 (26%), Positives = 150/345 (43%), Gaps = 21/345 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++ ++ +A +LS ++ A L+D+ TG V PD PASLTK+
Sbjct: 5 KKLILALAAVILSLTNTSIAYAQEPVLSADAAVLMDSATGQVFFAKEPDKRRFPASLTKI 64
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSAND 118
MTA V + ISK A+ S + G +TL+N LK +V SAND
Sbjct: 65 MTALVALEN-----GDPNDVVKISKKAASVSMGSVIDLRAGEEITLENLLKAALVCSAND 119
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
VAIAE + + F+ MN + + G T++ N +G HYTTA D+A+++ +
Sbjct: 120 STVAIAEHVGGNVENFLVMMNARALSAGAVNTNYANTNGYTLPNHYTTAYDLALIARQAL 179
Query: 179 TDFPQYM------HYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVAS 231
+ +G + + + NTN + F G DG+KTG T +G ++AS
Sbjct: 180 RNKQFNRLISIKETTLNWEGNKNRTLEIRNTNRLLREGFPGIDGVKTGSTPRAGDCLIAS 239
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNE 288
A + + LIAV+L + N R +A++L+ GF + + + + E
Sbjct: 240 ASRNGRRLIAVVLHS---NNRYTDAANILNYGFKEIKSYQVFKKGEQVVSVPVMEGVLKE 296
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
VP I++ + K+ K S + +L I
Sbjct: 297 VPLITQSGLQIDITDDKISLLRKKFLFKNSVMAPVKSGQVLGEII 341
>gi|297528386|ref|YP_003669661.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3]
gi|297251638|gb|ADI25084.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. C56-T3]
Length = 452
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 82/382 (21%), Positives = 143/382 (37%), Gaps = 46/382 (12%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFL------SIAETNKLPYYTLLDTNTGHVIAENYPDH 49
MR+ ++++ + PF S + L+D TG ++ E D
Sbjct: 1 MRRRKQNWLFWLLSICLCLTFGPFQQTVKAESAPLDIRADAAILVDAQTGRILYEKNIDT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS+TK+MT Y++ +K K+ T S + ++
Sbjct: 61 VLGIASMTKMMTEYLLLDAIKAKRVKWDQMYTPSDYVYRLSQDRALSNVPLRKDGKYTVR 120
Query: 110 LLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV------- 158
L A A ++ + +EK FV+ MN+ +K LGL F+NA G+
Sbjct: 121 ELYEAMAIYSANGATVAIAEIIAGSEKNFVKMMNDKAKELGLKDYKFVNATGLSNKDLKG 180
Query: 159 -------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA 206
+ +AR MA+L++R+ D P+ + I + K N NW
Sbjct: 181 FHPEGTSTNEENVMSARAMAMLAYRLLKDHPEVLKTASIPHKVFREGTKDEIKMDNWNWM 240
Query: 207 ----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL------DRNTRNKVS 256
V + G DG+KTG+T +G +A + LI+V++ A + R K +
Sbjct: 241 LPGLVYGYEGVDGLKTGYTEFAGNCFTGTAKRNGVRLISVVMNAKDASGKTTKEARFKET 300
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
L + GF + + ++ L E T K + +E + K
Sbjct: 301 EKLFNYGFNQYSLETLYPKGYQLKGKETLPVVKGKDKEVRVATGKNLDLLVKNGEEKQYK 360
Query: 317 ESHFIDFEKITLLKNKI--TKK 336
+ +D +K+T + KK
Sbjct: 361 PVYVLDKKKMTKEGKLVAPLKK 382
>gi|228925267|ref|ZP_04088365.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228931516|ref|ZP_04094424.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|229119676|ref|ZP_04248939.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus 95/8201]
gi|228663767|gb|EEL19344.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus 95/8201]
gi|228828134|gb|EEM73860.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228834381|gb|EEM79920.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
Length = 443
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 312 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQE 371
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 372 APIKKGAALGQMVI 385
>gi|15965358|ref|NP_385711.1| putative penicillin-binding precursor (D-alanyl-D-alanine
carboxypeptidase fraction A) transmembrane protein
[Sinorhizobium meliloti 1021]
gi|307312733|ref|ZP_07592364.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
BL225C]
gi|307317217|ref|ZP_07596658.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
AK83]
gi|15074538|emb|CAC46184.1| Putative penicillin-binding precursor (D-alanyl-D-alanine
carboxypeptidase fraction A) transmembrane protein
[Sinorhizobium meliloti 1021]
gi|306897305|gb|EFN28050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
AK83]
gi|306899458|gb|EFN30090.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
BL225C]
Length = 384
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 73/342 (21%), Positives = 131/342 (38%), Gaps = 12/342 (3%)
Query: 1 MRQFLVI-IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M+ V+ A++S + A K L+D TG V+ D P PASL KL
Sbjct: 3 MKWLAVVGFLAAVVSGQAVAQTPAFDTKAKQIYLVDAETGTVLFSRDEDAPVPPASLAKL 62
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVK 114
M VVF L + + T +S++A S S + + + ++ V+
Sbjct: 63 MAMEVVFEALDKGELTPETSFEVSEHAWRTGGAPSGTSTMFAAIKSRIRVADLIQGATVQ 122
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
AND + +AE + +E F + M +++LGL F NA G+ + T R++ L+
Sbjct: 123 LANDACIVLAEGMAGSEAAFAELMTKRARDLGLPVATFKNATGLPHPENKVTMRELVALT 182
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ P Y + E N N + +G DG+ TGF GF++ S +
Sbjct: 183 RHLYEAHPDYYRLYSQPEFEWNKILQRNKNPLIAANVGVDGLATGFAEGFGFSLAVSMQR 242
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPN 291
GD+ + + G R + S +L R+ + + V
Sbjct: 243 GDRRVYLAMGGLESEKERIEESRRVLDWAMTAFEKRRIFADGETIGEASVYGGADSRVAL 302
Query: 292 IS---EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ +V K ++ + +++ ++K
Sbjct: 303 VAGSPVDVLLPVKNPERLTARIVYKWPLNAPVAAGQQVGVVK 344
>gi|218897430|ref|YP_002445841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9842]
gi|218545638|gb|ACK98032.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9842]
Length = 437
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 73/375 (19%), Positives = 136/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ + D
Sbjct: 7 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYQKNADESLAI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 127 AMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLE 186
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFPQ ++ +I + N NW
Sbjct: 187 GTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 246
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 247 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 306
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ + V + V ++ + + +
Sbjct: 307 FEVKNVYGKDSVVKGHETVRVANAKEKDVVVQTKQAVSLPMRKGNKDGYKKEFKVSNKEP 366
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 367 EAPIKKGVTISKIII 381
>gi|319655038|ref|ZP_08009108.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. 2_A_57_CT2]
gi|317393262|gb|EFV74030.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. 2_A_57_CT2]
Length = 451
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 68/391 (17%), Positives = 133/391 (34%), Gaps = 56/391 (14%)
Query: 1 MRQFLV------IIAMAMLSNIFPFLSIAET-----NKLPYYTLLDTNTGHVIAENYPDH 49
M++ +A+ M+ + P + A L+D TG ++ + D
Sbjct: 1 MKKTFYRKSIAGFLALVMILGLLPGIHKAHAEDILNINADAAILVDAETGKILYQKNADK 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS+TK+MT Y++ ++E K +S+ + + ++
Sbjct: 61 VLGIASMTKMMTEYLLLEAVEEGKVKWDQEYAVSEYVWKVSQDRNLSNVPLRRDGKYNIR 120
Query: 110 LLIVKSANDIAVAIAESLCKTEK----KFVQHMNNTSKNLGLSATHFMNAHGV------- 158
L A A ++ +T FV+ MN + LGL F+N+ G+
Sbjct: 121 ELYEAMAIYSANGATIAIAETIAGSETNFVKMMNEKAAELGLKDYKFVNSSGLNNRDLKG 180
Query: 159 ------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA- 206
+ + +A+D A+L+ + FP+ + + K N NW
Sbjct: 181 SPPAGGPEEENVMSAKDTAMLAKELINRFPEVLETASTPRKTFREGTDDEIKMENWNWML 240
Query: 207 ---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL------DRNTRNKVSA 257
V + GADG+KTG T +G+ +A++ I+V++ A +R +
Sbjct: 241 PELVYGYEGADGLKTGTTDFAGYCFTGTAMRDGNRYISVVMNAKGANGQATYKSRFDETK 300
Query: 258 SLLSMGFYNKTDRKKINYI-------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+ GF N T + + + + + + + N +
Sbjct: 301 KMFDFGFSNFTKEEIVPANYQVKGQKTVPVTKGKEDKVKISSKDAIEMVVRNGEKENYKP 360
Query: 311 KEAKDKES------HFIDFEKITLLKNKITK 335
DKE +K + +
Sbjct: 361 VLVLDKEKLNENGELTAPIKKGEKIGYLTIE 391
>gi|49183048|ref|YP_026300.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
Sterne]
gi|165873233|ref|ZP_02217844.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0488]
gi|167635043|ref|ZP_02393360.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0442]
gi|167641737|ref|ZP_02399980.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0193]
gi|170688916|ref|ZP_02880118.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0465]
gi|170707518|ref|ZP_02897971.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0389]
gi|177655678|ref|ZP_02937003.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0174]
gi|190569327|ref|ZP_03022219.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
Tsiankovskii-I]
gi|196036362|ref|ZP_03103759.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus W]
gi|218901215|ref|YP_002449049.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
AH820]
gi|227812687|ref|YP_002812696.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. CDC 684]
gi|254686602|ref|ZP_05150461.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. CNEVA-9066]
gi|254724155|ref|ZP_05185940.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A1055]
gi|254737010|ref|ZP_05194715.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. Western North America USA6153]
gi|254755970|ref|ZP_05208002.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. Vollum]
gi|254761669|ref|ZP_05213687.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. Australia 94]
gi|49176975|gb|AAT52351.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
Sterne]
gi|164711031|gb|EDR16597.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0488]
gi|167510291|gb|EDR85694.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0193]
gi|167529517|gb|EDR92267.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0442]
gi|170127514|gb|EDS96388.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0389]
gi|170667140|gb|EDT17901.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0465]
gi|172080018|gb|EDT65118.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0174]
gi|190559549|gb|EDV13542.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
Tsiankovskii-I]
gi|195990992|gb|EDX54963.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus W]
gi|218539949|gb|ACK92347.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
AH820]
gi|227002528|gb|ACP12271.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. CDC 684]
Length = 438
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 307 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQE 366
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 367 APIKKGAALGQMVI 380
>gi|126652926|ref|ZP_01725068.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. B14905]
gi|126590256|gb|EAZ84378.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. B14905]
Length = 439
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 67/367 (18%), Positives = 131/367 (35%), Gaps = 43/367 (11%)
Query: 13 LSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ P + AET + L+D ++G ++ E D AS+TK+MT Y++ +
Sbjct: 17 IFAGIPAKANAETDLGLTVDAAILIDADSGKILYEQNADTSLGIASMTKMMTEYLLLDAI 76
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
++ + + ++ L A A A ++ +
Sbjct: 77 DAGTVKWDQEYHVTDYTYRMSQNRALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAE 136
Query: 130 TEKK----FVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMA 171
T F++ MN ++ LGL F+N+ G+ + + A+ +A
Sbjct: 137 TIAGTETEFLKLMNKKAEELGLEGYKFVNSTGLNNADLFGMQPAGTGPEDENVMPAKYVA 196
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA----VGTFLGADGMKTGFTC 222
L++ + D P+ + QI + N N+ V + G DG+KTG T
Sbjct: 197 KLAYHLLKDHPKVLETSQITKKTFREGTEDAIEMSNWNFMLPGLVFEYQGVDGLKTGTTN 256
Query: 223 ASGFNIVASAIQGDQSLIAVIL------GALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
+G +A + LIAV++ G R +A L + GF + ++ +
Sbjct: 257 FAGHCFTGTAERNGTRLIAVVMKAVDASGQGSYKARFDATAKLFNYGFSQFSKQEILPAN 316
Query: 277 -------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + E + K + K DK+S +K T++
Sbjct: 317 YTFKDQKTVKVTKGKEDKVEIAVKEPISFMIKSSDKDLYKPKLVLDKKSLEAGVKKDTVV 376
Query: 330 KNKITKK 336
+ ++
Sbjct: 377 GKVVIER 383
>gi|196041942|ref|ZP_03109229.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
NVH0597-99]
gi|196027197|gb|EDX65817.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
NVH0597-99]
Length = 438
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 307 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQE 366
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 367 APIKKGAALGQMVI 380
>gi|302382572|ref|YP_003818395.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevundimonas
subvibrioides ATCC 15264]
gi|302193200|gb|ADL00772.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brevundimonas
subvibrioides ATCC 15264]
Length = 514
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 90/236 (38%), Positives = 138/236 (58%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D TG V+ + D PAS+TK+MT Y+VF L++ L IT+S A+
Sbjct: 44 AAIVVDAGTGEVLFARHADSQRYPASVTKMMTLYLVFEALEKGTVHLDDVITVSPLAASQ 103
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
PPS G T+ LD+A++ V+SAND+A+ +AE + ++ +F ++ LG+
Sbjct: 104 PPSKLGLAAGQTIRLDDAMRATTVRSANDMAMVLAEHIGGSQARFAALATLKAQELGMGQ 163
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T ++N +G+ T+ARD+AILS I D+PQY YF I +G++Y NTN +
Sbjct: 164 TRYVNPNGLPDSRQLTSARDLAILSRAIMRDYPQYYSYFGIHDWTYQGREYRNTNGLLLG 223
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
G DG+KTGFT ASG+N+ ASA++G + +I ++LG TRN A+L+ GF
Sbjct: 224 GNGYDGIKTGFTNASGYNLAASAVRGGKRVITIVLGGRSSITRNAHVAALMDTGFE 279
>gi|126739769|ref|ZP_01755460.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. SK209-2-6]
gi|126719001|gb|EBA15712.1| D-alanyl-D-alanine carboxypeptidase [Roseobacter sp. SK209-2-6]
Length = 388
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 141/343 (41%), Gaps = 8/343 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR V A + A ++D T V+ D P PAS++KLM
Sbjct: 1 MRPVFVTSAFVASLGLSALPLAAFETGARAAYVIDQGTDTVLLSKNADQPLPPASMSKLM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L++ + L+ + +S +A Y S + +++ L+ +IV S ND
Sbjct: 61 TLYIAFEALQDGRLTLSEKLPVSAHAMSYGGSTMFLDTTDRVGVEDLLRGIIVLSGNDAC 120
Query: 121 VAIAESLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
IAE+L E F ++M ++ LG+ F N++G GH + RD+ IL+ R+
Sbjct: 121 AVIAEALSPDGTEAGFARYMTRRAQELGMVNATFANSNGWPAAGHRMSMRDLGILAERLI 180
Query: 179 TDFPQYMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
DFPQY F K N N +G +GADG+KTG T +G+ +V SA+QG
Sbjct: 181 EDFPQYYPLFSEKEFAFDGRAPSNTRNRNPLLGLGIGADGLKTGHTSEAGYGLVGSAVQG 240
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNI 292
++ +I VI G R + + ++++ F + I + V +
Sbjct: 241 ERRVIFVITGLNSAKARAEEAEAVVNWSFRQFAKKTIAKAGIPVAQAEIWRGAQQSVGLV 300
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ E K K L + +
Sbjct: 301 PANDFEVLLPALSGKQVAAEVVYKGPVNAPVSKGQRLAELVLR 343
>gi|52145200|ref|YP_081628.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
carboxypeptidase) [Bacillus cereus E33L]
gi|51978669|gb|AAU20219.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
carboxypeptidase) [Bacillus cereus E33L]
Length = 435
Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 4 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 63
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 64 ASMTKMMSEYLVHDAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 123
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 124 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 183
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 184 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 243
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 303
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 304 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQE 363
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 364 APIKKGAALGQMVI 377
>gi|262366391|gb|ACY62948.1| penicillin-binding protein 5 [Yersinia pestis D182038]
Length = 335
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 86/272 (31%), Positives = 128/272 (47%), Gaps = 7/272 (2%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N+ + Y L+D N+G V+AE D NPASLTK+MT+YV+ +K K
Sbjct: 54 VNLKTMIPGVPQIDAEAYILIDYNSGKVLAEMNADTRRNPASLTKMMTSYVIGQAIKSGK 113
Query: 74 AMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+T+ K+A K G + + + + ++S ND VA+A+ +
Sbjct: 114 IGAEDMVTVGKDAWATGNPEFKGSSLMFLKPGDRVPVSKLTRGINLQSGNDACVAMADYV 173
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ FV MNN K LGL THF HG+ G +++ARDMA++ + D P
Sbjct: 174 AGSQDSFVNLMNNYVKALGLQNTHFKTVHGLDAEGQFSSARDMALIGQALIRDVPDEYAI 233
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ K + N N T L DG+KTG T A+G+N+VASA G LI+V+LG
Sbjct: 234 YKEKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTEAAGYNLVASATDGQMRLISVVLGG 293
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
R S LL+ GF + +
Sbjct: 294 HTFKGRETESKKLLTWGFRFFETVAPLKVGKE 325
>gi|228901076|ref|ZP_04065285.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis IBL 4222]
gi|228858592|gb|EEN03043.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis IBL 4222]
Length = 442
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 72/375 (19%), Positives = 136/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ + D
Sbjct: 12 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYQKNADESLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 132 AMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLE 191
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ ++ +I + N NW
Sbjct: 192 GTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ + V + V ++ + + +
Sbjct: 312 FEVKNVYGKDSVVKGHETVRVANAKEKDVVVQTKQAVSLPMRKGNKDGYKKEFKVSNKEP 371
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 372 EAPIKKGVTISKIII 386
>gi|319783486|ref|YP_004142962.1| serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317169374|gb|ADV12912.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 434
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 76/329 (23%), Positives = 133/329 (40%), Gaps = 11/329 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
P + K ++D TG V+ D P PAS+ KLMT VVF+ +K + L
Sbjct: 69 APAGAQLFETKAAQAFMIDAETGTVLFSKEADKPIPPASMAKLMTMEVVFNAIKSGRLKL 128
Query: 77 TTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+S+NA S K S++ L++ ++ + V++AND + IAE + +E
Sbjct: 129 DDTFVVSENAWRKGGAPSGTSTMFAKLKSSIRLEDLIQGVTVQAANDGCIVIAEGMSGSE 188
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
F M ++ +GL + F+N+ G+ G TT R++A L+ + D+P + YF K
Sbjct: 189 DNFAVQMTERARQIGLKTSTFVNSTGLPADGQQTTVRELAQLALHLWRDYPDFYRYFAQK 248
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
N N + +GADG+ G + A+GF IV S +IA + G
Sbjct: 249 DFTWNKISQRNRNPLLAMDIGADGLAVGASEAAGFGIVGSLSHNGTRVIAAMSGLASDKE 308
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEIIN 305
R + + LL G + + Q ++ ++
Sbjct: 309 RAEEARKLLDWGVRSFEKTEIFARDEVVGEAQVFGGAKSGVTLKAKGPIDIFLPITNRDK 368
Query: 306 YNTQMKEAKDKESHFIDFEKITLLKNKIT 334
++ + + + + L+ I
Sbjct: 369 LTARIVYDGPVAAPVEEGQPVGALRVWIG 397
>gi|255524154|ref|ZP_05391114.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
carboxidivorans P7]
gi|296186612|ref|ZP_06855014.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium
carboxidivorans P7]
gi|255512139|gb|EET88419.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
carboxidivorans P7]
gi|296048649|gb|EFG88081.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium
carboxidivorans P7]
Length = 398
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 82/325 (25%), Positives = 142/325 (43%), Gaps = 14/325 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ + G +I E PAS+TK+MT + + K L+ +TIS+
Sbjct: 44 KVDAKSALLMEPSNGKIIYEKNCHEKLAPASVTKVMTMLLTMENVDSGKIKLSDKVTISE 103
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NA + S+ G T++ +K + + S ND AVA+AE L +E+ FV+ MN +
Sbjct: 104 NAKKMGGSSMLLDTGEVRTVEELIKGIGIASGNDAAVAMAEYLGGSEEGFVKLMNERAHK 163
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----PQYMHYFQIKGLEIKGKKY 200
LG+ T+F N G+ GH TTA D+AI+S + + I
Sbjct: 164 LGMKDTNFNNCTGLSSPGHVTTAYDIAIMSRELLKHPDILKYTGTYMETISEGRKSPIGL 223
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N V F G DG+KTGFT + + I A+A + ++AVI+G+ RNK ++ L+
Sbjct: 224 VNHNKLVRFFKGCDGLKTGFTDEAKYCISATATRDGVRMLAVIMGSPTYKVRNKDASMLM 283
Query: 261 SMGFYNKTDRKKINYIIKDFYQ----QNLSNEVPNISEEVCTTQKEIINYNT------QM 310
+ GF ++K I + + ++ + +
Sbjct: 284 NYGFSKYENKKLIEKGKDVEKVNLNRKGDRFFIAKAQDDFSVVLERGKDAKVSKKVVIDK 343
Query: 311 KEAKDKESHFIDFEKITLLKNKITK 335
+ + K + F+ + ++ + + K
Sbjct: 344 DKKEYKSNEFVGYCEVYVEGKIVGK 368
>gi|84500362|ref|ZP_00998611.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola
batsensis HTCC2597]
gi|84391315|gb|EAQ03647.1| D-alanyl-D-alanine carboxypeptidase family protein [Oceanicola
batsensis HTCC2597]
Length = 477
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 96/258 (37%), Positives = 144/258 (55%), Gaps = 1/258 (0%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + ++D +G V+ + D +PASLTK+MT Y+ F ++
Sbjct: 1 MVFVANPAMREAQAAPYAAMVMDARSGEVLHSSNADARLHPASLTKMMTLYIAFEAVRNG 60
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ L TP+ IS+NA+ PPS GS + L ++ VKSAND A AI E++ +E
Sbjct: 61 EITLDTPVRISRNAAAEPPSKLGLAAGSKIKLRYLIRASAVKSANDAATAIGEAIEGSEA 120
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+F + M T+K LG++ T F NAHG+ + GH +TARDM IL + D+P+Y + F
Sbjct: 121 RFARRMTRTAKALGMTRTTFKNAHGLTESGHLSTARDMTILGRHLLFDYPEYYNLFSRVQ 180
Query: 193 LEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
KK NTN +G++ GADG+KTG+T A+GFN+VASA +G++ +IA + G +
Sbjct: 181 THAGIKKVSNTNRRLLGSYRGADGIKTGYTRAAGFNLVASAERGNERIIATVFGGRSSAS 240
Query: 252 RNKVSASLLSMGFYNKTD 269
RN A LL +GF
Sbjct: 241 RNAKVAELLDLGFKRAPS 258
>gi|83945500|ref|ZP_00957847.1| D-alanyl-D-alanine carboxypeptidase [Oceanicaulis alexandrii
HTCC2633]
gi|83851076|gb|EAP88934.1| D-alanyl-D-alanine carboxypeptidase [Oceanicaulis alexandrii
HTCC2633]
Length = 418
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 91/265 (34%), Positives = 141/265 (53%), Gaps = 2/265 (0%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M ++++ + + + A + D TG V+ D PASLTK+M
Sbjct: 1 MSRYILALLCVLSVFALTSRAEASERYA--AFVADMETGEVLHSRRADAERYPASLTKMM 58
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y++F L+ + L IT S A+ P S + G T+ +++A++ LI++SAND+A
Sbjct: 59 TLYMLFEALERGEVSLDDAITASAEAASRPSSKLGLRAGQTIRVEDAIRALIIQSANDVA 118
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE L E +F M ++ LG++ T F NA G+ +TTARD+A L++ + D
Sbjct: 119 VAVAEHLQDDEARFAAVMTLRARELGMTNTVFRNASGLPDAAQHTTARDVARLAYALHED 178
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQY HYF G + N N VG G DG+KTG+ ASGFN+ ASA + +I
Sbjct: 179 FPQYYHYFGETRFRWNGVTHRNHNSLVGNQAGVDGLKTGYIRASGFNLAASAERDGHRII 238
Query: 241 AVILGALDRNTRNKVSASLLSMGFY 265
AV++G + + R+ + L+ F
Sbjct: 239 AVVMGGVSASVRDAHARELIEAAFS 263
>gi|325661128|ref|ZP_08149755.1| hypothetical protein HMPREF0490_00488 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472635|gb|EGC75846.1| hypothetical protein HMPREF0490_00488 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 394
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 96/350 (27%), Positives = 155/350 (44%), Gaps = 31/350 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET-----------------NKLPYYTLLDTNTGHVIA 43
MR L ++ ++++ ++ L++ +TG +I
Sbjct: 15 MRTILAVV-LSVILCTGTVCAMPPDGKVLQEEVESEKKNELELTAQSAVLMEASTGKIIY 73
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
E + PAS+TK+MT ++ +++ K L +T+S+ A+ S + G T
Sbjct: 74 EKQKEEERPPASVTKVMTMLLILDAVEDGKIKLEDEVTVSEYAASMGGSQVFLEPGEVQT 133
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+D LK + V SAND VA++E + +E+ FV+ MN +K LG+ THF+N +G+ GH
Sbjct: 134 VDTMLKCIAVASANDACVAMSEYISGSEEAFVEQMNARAKGLGMEHTHFVNCNGLDADGH 193
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNWAVGTFLGADG 215
TTA D+A++S + T P+ Y I I K NTN V + A G
Sbjct: 194 LTTAYDIALMSRELITKHPEIEKYSMIWMENITHKTNKGTSEFGLSNTNKLVRHYPYATG 253
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
+KTG T + F I A+A + LIAVI+ A D R K + +LL+ GF T Y
Sbjct: 254 LKTGSTSKAKFCISATARKDGMDLIAVIMAAPDSKMRVKDATTLLNYGFGKCT-----KY 308
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ K+ E+V + I Y + + +K
Sbjct: 309 VDKEKGGLKAVKVDGGTKEKVRIEPEAIFQYVDTTGANLSEIQKKLVLKK 358
>gi|218886223|ref|YP_002435544.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|218757177|gb|ACL08076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 481
Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats.
Identities = 99/308 (32%), Positives = 148/308 (48%), Gaps = 5/308 (1%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
S ET + LLD +TG +I E D P PASLTK+++ YV ++ KA
Sbjct: 67 PVAHASSHETLDVRSAMLLDMSTGRIIYEQNADEPIPPASLTKVLSMYVALDQVRAGKAS 126
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L + +S+ A S K+G T+TLD+ L+ + V S ND +VA AE + FV
Sbjct: 127 LKDTVKVSRRAFSTGGSRMFLKQGETLTLDDLLEGMAVSSGNDASVATAEHIGGNVDNFV 186
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
Q MN ++ LG+ + F N HG+ G +TTARDM LS +P+ + Y + ++
Sbjct: 187 QMMNAKARALGMKNSVFRNPHGLPAAGQHTTARDMLALSRAYLAQYPEALRYHSTRYIKH 246
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
N N +G GADG+KTG+ ASG+N++++ +G L+AV+LGA R +
Sbjct: 247 NKVITTNKNPLLGNCEGADGLKTGWVFASGYNLISTVKRGKTRLLAVVLGAETTQARAQE 306
Query: 256 SASLLSMGFYN-----KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
L+ GF + K+ + + Y NL E+ T K T +
Sbjct: 307 VNRLVEAGFRSVAGGGKSVSTLLADMRPADYALNLHKTNSEAYAELRKTSKATKARKTSV 366
Query: 311 KEAKDKES 318
AK E
Sbjct: 367 AAAKASED 374
>gi|291539061|emb|CBL12172.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4]
Length = 348
Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats.
Identities = 88/312 (28%), Positives = 146/312 (46%), Gaps = 11/312 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
++ TG V+ E P +PAS+TK+MT ++F L K+ L +T+S+ A+ S
Sbjct: 1 MEAFTGAVVYEKNPHEARHPASVTKIMTLLLIFDALSSKQISLDDTVTVSEYAASIGGSQ 60
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ G T T++ +K + V SAND VA+AE + +E +FV+ MN +K LG++ T+F+
Sbjct: 61 VFLEPGETQTVETMIKCISVASANDACVAMAEHVAGSESEFVRMMNERAKGLGMNDTNFV 120
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNW 205
N G+ GH T+A D+A++S + T +P+ Y I I NTN
Sbjct: 121 NCCGLDADGHMTSANDIALMSRELITKYPKIHDYCTIWMENITHTTAKGSSEFGLTNTNK 180
Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ + A G+KTGFT + + I A+A + D LIAVI+GA D +R+ + +LL+ GF
Sbjct: 181 LIKHYQYATGLKTGFTNTAMYCISATAKKDDMELIAVIMGAPDIKSRSADATTLLNYGFG 240
Query: 266 N---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
D + + + + + K + E+
Sbjct: 241 KCRIYCDSHEDKLDDLPVKKGLADSVGIIYQRPFQYMTTDGSDLTGITKSIELPENVTAP 300
Query: 323 FEKITLLKNKIT 334
+K +
Sbjct: 301 VKKGNTAGKAVY 312
>gi|153810795|ref|ZP_01963463.1| hypothetical protein RUMOBE_01179 [Ruminococcus obeum ATCC 29174]
gi|149833191|gb|EDM88273.1| hypothetical protein RUMOBE_01179 [Ruminococcus obeum ATCC 29174]
Length = 422
Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats.
Identities = 90/339 (26%), Positives = 146/339 (43%), Gaps = 12/339 (3%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
I M + + P L++ TG + D +PAS+TK+MT ++F
Sbjct: 48 ICMISVYAGQENSTSGPELSAPSAVLMEAETGQFVYAKDKDTRRSPASVTKIMTLILIFD 107
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L LT P+T S +A S ++G T++ +K +++ S ND +VA+AE +
Sbjct: 108 HLHAGDISLTDPVTTSAHAKSMGGSQVFLEEGEIQTVETLIKCIVIASGNDASVAMAEFI 167
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMH 186
+E++FV MN + LG+ THF++ G+ HYTTA D+AI+S + +P+ +
Sbjct: 168 SGSEQEFVAQMNLRADRLGMKNTHFIDCCGLTDSDEHYTTANDIAIMSRELIVKYPKILD 227
Query: 187 YFQIKGLE--------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
Y I IK NTN + T+ G G+KTG T +GF + A+A +
Sbjct: 228 YSSIWMETIIHETSQGIKEFGLTNTNRLIRTYPGCRGLKTGSTSKAGFCLSATAERNSLK 287
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEE 295
LI+V++ A D R K +A+LL GF D + + + +
Sbjct: 288 LISVVMAAPDYKARLKDAAALLDYGFSRCSIYEDNTPESLPAIPVKRGLHRSAAVQYGKT 347
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ T K+ S +K I
Sbjct: 348 FRYLSTDGTKITTVNKKYIHPASVNAPVKKGEKAGEIIY 386
>gi|313901924|ref|ZP_07835342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
subterraneus DSM 13965]
gi|313467819|gb|EFR63315.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
subterraneus DSM 13965]
Length = 475
Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats.
Identities = 84/353 (23%), Positives = 139/353 (39%), Gaps = 27/353 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSI------------AETNKLPYYTLLDTNTGHVIAENYPDHPW 51
V + +A+L+ P + + L+D TG V+ D
Sbjct: 43 LAVALGLAVLAGAVPGVPAARVRAEGSAPQQPPSQDARAAILVDAATGQVLYARNADATM 102
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS TK+MTA + + L IT S+ A S+ G TL+ L L
Sbjct: 103 PMASTTKIMTALLAIE-----RGDLQQVITTSQRAFGVEGSSLYLALGEQRTLEELLYGL 157
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+++S ND AVAIAE L + + FVQ MN ++ LGL T F + HG+ HYT+ARD+A
Sbjct: 158 MLQSGNDAAVAIAEGLAGSVETFVQWMNQRARELGLEHTRFADPHGLASRDHYTSARDLA 217
Query: 172 ILSWRIKTDFPQY-----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L+ + Y + + N N + + GA G+K G+T A+
Sbjct: 218 TLARVALANPTFRRVVGTREYRMPWPEKNSERVLYNHNRFLWRYDGATGVKNGYTSAARG 277
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQ 283
+VASA +G L+ V+LGA + A+L+ GF + + +
Sbjct: 278 ALVASAQRGGVELVGVLLGAH-PTGMYRDMAALMDWGFARFEPLPLVQAGERVGQVPVRG 336
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-SHFIDFEKITLLKNKITK 335
+ V ++ ++ + E + + + + +
Sbjct: 337 GRQDSVAAVAAYGVRWLVPRDEPAPPVRRQVELEQALQAPVGEGARVGTLVVR 389
>gi|319638282|ref|ZP_07993045.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria mucosa C102]
gi|317400555|gb|EFV81213.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria mucosa C102]
Length = 405
Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats.
Identities = 83/363 (22%), Positives = 153/363 (42%), Gaps = 32/363 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS--------------------------IAETNKLPYYTLL 34
M++ L+ + A L N + Y +
Sbjct: 2 MKKTLLSLIFAALLNTHALAADPVASAPAVQGEAQPQPLLHSINSPTTPPEIAATAYIVT 61
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D ++ +A N D P PA+LT++MTAY+ F L+ +T+S A + S
Sbjct: 62 DLHSKQTLASNNADAPIEPAALTQMMTAYLAFKALENGTLEAGQMLTVSNAAWKVEGSRM 121
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFM 153
+++ + +K ++SAND A+ +AE++ + +FV+ MN +K LG+ THF
Sbjct: 122 FLDPKVPVSVSSLIKGTTIQSANDAAITLAEAIGNGSIDEFVKQMNEEAKRLGMKHTHFN 181
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
N G+ +GH +T D+AIL+ + D+P+Y F K + + PN N +
Sbjct: 182 NPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIEQPNRNLLLYRDSSI 241
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
DG+KTG++ +G+++ AS+ + ++ +++++ GA R S+ LL+ K
Sbjct: 242 DGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKLLNWSLQAFDTPKLY 301
Query: 274 NYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
N Y+ + ++V T N + + + EK +L
Sbjct: 302 NGGEVISQVKVYKGSTKAVDIGFLDDVYITIPHDTGKNVKP-ILETLQPVLAPIEKGQVL 360
Query: 330 KNK 332
Sbjct: 361 GKL 363
>gi|30260203|ref|NP_842580.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. Ames]
gi|47525265|ref|YP_016614.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames
Ancestor']
gi|30253524|gb|AAP24066.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. Ames]
gi|47500413|gb|AAT29089.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. 'Ames Ancestor']
Length = 435
Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 4 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 63
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 64 ASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 123
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 124 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 183
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 184 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 243
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 303
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 304 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQE 363
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 364 APIKKGAALGQMVI 377
>gi|30018287|ref|NP_829918.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|29893827|gb|AAP07119.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
Length = 438
Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats.
Identities = 72/374 (19%), Positives = 145/374 (38%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L SN A + L++ N+G ++ + D +
Sbjct: 7 KRFIALVTVLTLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LG+ +N+ G+
Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGVKNYKCVNSTGLTNKDLKGMHPE 186
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFGMSNWNWMLKGLV 246
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 307 EVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQE 366
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 367 APIKKGAALGQMVI 380
>gi|89100964|ref|ZP_01173810.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. NRRL
B-14911]
gi|89084335|gb|EAR63490.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus sp. NRRL
B-14911]
Length = 433
Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats.
Identities = 68/363 (18%), Positives = 130/363 (35%), Gaps = 45/363 (12%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
A +++ TG V+ D AS+TK+MT Y++ +KE K
Sbjct: 13 ASADDALNINADAAIVVEAETGKVLYSKNADKVLGIASMTKIMTEYLLLEAIKEGKVKWD 72
Query: 78 TPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+S+ + + + + + + SAN +AIAE++ +E
Sbjct: 73 QEYAVSEYVWKVSQDRALSNVPLRRDGKYNIKELYEAMSIYSANGATIAIAETIAGSESN 132
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTARDMAILSWRIKTD 180
FV+ MN+ ++ LGL F+N+ G+ + +AR A L+ R+ D
Sbjct: 133 FVKMMNDKAEELGLKDYKFVNSSGLNNRDLKGSHQVGGAEDENVMSARATAKLAQRLLHD 192
Query: 181 FPQYMHYFQIKGLEIK-----GKKYPNTNWAVGT----FLGADGMKTGFTCASGFNIVAS 231
+P+ + I + K N NW + + + G DG+KTG T +G+ +
Sbjct: 193 YPEILETTSIPTKNFREGTDDEIKMDNWNWMLPSLVFGYEGVDGLKTGTTDFAGYCFTGT 252
Query: 232 AIQGDQSLIAVILGAL------DRNTRNKVSASLLSMGFYNKTDRKKINYIIK------- 278
A + I V++ A +R + +L F N + + I +
Sbjct: 253 ATRDGNRYITVVMNAKGEGNSGSYKSRFDETRKMLDYAFSNFSKEEIIAKNYQVKGQKTL 312
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES------HFIDFEKITLLKNK 332
+ + + + K + + + DK+ +K +
Sbjct: 313 PVTKGKEDSVKIQAKDAIELVVKNGEKESYKPELVLDKDKLDKDGNLTAPVKKGEKIGYL 372
Query: 333 ITK 335
K
Sbjct: 373 TLK 375
>gi|241758793|ref|ZP_04756906.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria flavescens
SK114]
gi|241321001|gb|EER57214.1| D-alanyl-D-alanine carboxypeptidase DacC [Neisseria flavescens
SK114]
Length = 405
Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats.
Identities = 83/363 (22%), Positives = 152/363 (41%), Gaps = 32/363 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS--------------------------IAETNKLPYYTLL 34
M++ L+ + A L N + Y +
Sbjct: 2 MKKTLLSLIFAALLNTPALAADPVASAPVVQSEAQTQPLLHSINSPTTPPEIAATAYIVT 61
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D ++ +A N D P PA+LT++MTAY+ F L+ +T+S A + S
Sbjct: 62 DLHSKQTLASNNADTPIEPAALTQMMTAYLAFKALENGTLEAGQMLTVSNAAWKVEGSRM 121
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFM 153
+++ + +K ++SAND A+ +AE+ + +FV+ MN +K LG+ THF
Sbjct: 122 FLDPKVPVSVSSLIKGTTIQSANDAAITLAEALGNGSIDEFVKQMNEEAKRLGMKHTHFN 181
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
N G+ +GH +T D+AIL+ + D+P+Y F K + + PN N +
Sbjct: 182 NPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIEQPNRNLLLYRDSSI 241
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
DG+KTG++ +G+++ AS+ + ++ +++++ GA R S+ LL+ K
Sbjct: 242 DGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKLLNWSLQAFDTPKLY 301
Query: 274 NYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
N Y+ + ++V T N + + + EK +L
Sbjct: 302 NGGEVISQVKVYKGSTKAVDIGFLDDVYITIPHDTGKNVKP-ILETLQPVLAPIEKGQVL 360
Query: 330 KNK 332
Sbjct: 361 GKL 363
>gi|284800030|ref|ZP_05985503.2| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria subflava
NJ9703]
gi|284796183|gb|EFC51530.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria subflava
NJ9703]
Length = 405
Score = 182 bits (461), Expect = 6e-44, Method: Composition-based stats.
Identities = 83/363 (22%), Positives = 154/363 (42%), Gaps = 32/363 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS--------------------------IAETNKLPYYTLL 34
M++ L+ + A L N + Y +
Sbjct: 2 MKKTLLSLIFAALLNTHALAADPVASAPAVQGEAQPQPLLHSINSPTTPPEIAATAYIVT 61
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D ++ +A N D P PA+LT++MTAY+ F L+ + +T+S A + S
Sbjct: 62 DLHSKQTLASNNADAPIEPAALTQMMTAYLAFKALENGTLEASQMLTVSNAAWKVEGSRM 121
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFM 153
+++ + +K ++SAND A+ +AE++ + +FV+ MN +K LG+ THF
Sbjct: 122 FLDPKVPVSVSSLIKGTTIQSANDAAITLAEAIGNGSIDEFVKQMNEEAKRLGMKHTHFN 181
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
N G+ +GH +T D+AIL+ + D+P+Y F K + + PN N +
Sbjct: 182 NPTGISSNGHVSTVGDLAILAAALINDYPKYYPLFANKSFKYNNIEQPNRNLLLYRDSSI 241
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
DG+KTG++ +G+++ AS+ + ++ +++++ GA R S+ LL+ K
Sbjct: 242 DGLKTGYSEGAGYHLAASSKRNNRRIVSILAGAESTEARASESSKLLNWSLQAFDTPKLY 301
Query: 274 NYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
N Y+ + ++V T N + + + EK +L
Sbjct: 302 NGGEVISQVKVYKGSTKAVDIGFLDDVYITIPHDTGKNVKP-ILETLQPVLAPIEKGQVL 360
Query: 330 KNK 332
Sbjct: 361 GKL 363
>gi|114799142|ref|YP_759747.1| putative D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium
ATCC 15444]
gi|114739316|gb|ABI77441.1| putative D-alanyl-D-alanine carboxypeptidase [Hyphomonas neptunium
ATCC 15444]
Length = 442
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 91/258 (35%), Positives = 142/258 (55%), Gaps = 2/258 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ S +A + ++D ++G V+ D P PASLTK+MT Y++F
Sbjct: 13 SAIAASVSITAAVMAPSAHAEKYAAIVVDADSGEVLHARNQDDPRYPASLTKVMTLYLLF 72
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ L I +S+NA+ PPSN + G T+T+++A+ L KSAND+A A+AE
Sbjct: 73 DAIDAGDVSLKDKIKVSRNAAAQPPSNLRLRAGDTITVEDAIYALTTKSANDVAAAVAEF 132
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
L +E+KF M + +++LGLS T F NA G+ +TARD+AIL+ + + Y H
Sbjct: 133 LGGSERKFAAMMTDKARDLGLSNTTFRNASGLPDTAQLSTARDLAILADALLDNHEPYYH 192
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
YFQ + G Y + N +G+ G DG+KTG+T ASGFN++ SA + + +IA++LG
Sbjct: 193 YFQNQRFSWGGMTYKSHNNLIGSVDGVDGIKTGYTRASGFNLMTSAERDGRRVIAIVLGG 252
Query: 247 LDRNTRNKVSASLLSMGF 264
+R+ L+ F
Sbjct: 253 ASAKSRDAHVTELVESAF 270
>gi|75763243|ref|ZP_00743000.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|74489272|gb|EAO52731.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
thuringiensis serovar israelensis ATCC 35646]
Length = 448
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 72/376 (19%), Positives = 136/376 (36%), Gaps = 43/376 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ + D
Sbjct: 17 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYQKNADESLAI 76
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 77 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 136
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 137 AMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLE 196
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAVG-- 208
+ +ARD AIL+ R+ DFP+ ++ +I + N NW +
Sbjct: 197 GTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKTFQEGGKYPIDMANFNWMLKXF 256
Query: 209 ---TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ G DG+KTG T +G + + LI+V++ A R + L GF
Sbjct: 257 XLXQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFA 316
Query: 266 NKTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
N + + V + V ++ + + +
Sbjct: 317 NFEVKNVYGKDSVVKGHETVRVANAKEKDVVVQTKQAVSLPMRKGNKDGYKKEFKVSNKE 376
Query: 319 HFIDFEKITLLKNKIT 334
+K + I
Sbjct: 377 PEAPIKKGVTISKIII 392
>gi|89070235|ref|ZP_01157559.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola granulosus
HTCC2516]
gi|89044155|gb|EAR50313.1| D-alanyl-D-alanine carboxypeptidase [Oceanicola granulosus
HTCC2516]
Length = 411
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 75/323 (23%), Positives = 141/323 (43%), Gaps = 11/323 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + + D T ++ E D P PAS++KLMT Y+ F ++ + L
Sbjct: 23 AAAQGFDTRANAAYVYDVTTETILLEKNADEPLPPASMSKLMTLYMAFEAIESGRLRLDE 82
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT--EKKFVQ 136
+ +S++A Y S T+++ L+ +IV S ND + +AE+L E F +
Sbjct: 83 QLPVSEHAMSYGGSTMFLDTTDRPTVEDLLRGVIVLSGNDASAVLAEALSPDGTEAGFAR 142
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
M + +GL+ + F N++G H + RD+ +++ R+ DFP F + E
Sbjct: 143 LMTERGRQIGLTNSTFANSNGWPAPDHRMSVRDLGVVATRLIEDFPDLYPMFAEQTFEYD 202
Query: 197 ---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
N N +G +GADG+KTG T +G+ +V SA+Q D+ ++ V+ G R
Sbjct: 203 GRAPTNVRNRNPLLGLGIGADGLKTGHTEEAGYGLVGSAVQEDRRVVFVLAGLDSTAERA 262
Query: 254 KVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIIN--YN 307
+ S +++ F ++ + D + S ++E+V +
Sbjct: 263 EESERVVNWAFRQYVEKGLTEAGTRIAEADVWMGAASTVGLTVAEDVSLLVPVLSQGGVA 322
Query: 308 TQMKEAKDKESHFIDFEKITLLK 330
++ E+ ++I L+
Sbjct: 323 AEVVYTGPVEAPVAAGDEIAELR 345
>gi|163938022|ref|YP_001642906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
gi|163860219|gb|ABY41278.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
Length = 435
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 73/374 (19%), Positives = 144/374 (38%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L SN A + L++ N+G ++ + D +
Sbjct: 4 KRFIALVTVLTLAFGMFAPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 63
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G T+ +
Sbjct: 64 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKISQDASLSNVALENGGLYTVKELYE 123
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+AE++ E FV+ MN+ +K LGL F+N+ G+
Sbjct: 124 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGMHPE 183
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I + +K N NW V
Sbjct: 184 GTTPDEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKVFRPEKEKFGMSNWNWMLKGLV 243
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 303
Query: 268 TDRKKINYIIKDFYQQ-------NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+K ++ + V + V + + + + +
Sbjct: 304 EMKKMYEKGSSVKGKETVRVENAKDKDVVVQTKQAVSLPVPKGSKDVYKTEFKEGNKGQE 363
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 364 APLKKGVALGQMVV 377
>gi|302389707|ref|YP_003825528.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
oceani DSM 16646]
gi|302200335|gb|ADL07905.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosediminibacter
oceani DSM 16646]
Length = 377
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 83/334 (24%), Positives = 151/334 (45%), Gaps = 17/334 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+++ + + + Y L+D +G ++ E + AS TK+MTA
Sbjct: 12 FVILFTSGFFISGSEAKELNLSLNARAYVLMDPVSGRILVEKNSEIRLPMASTTKIMTAI 71
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
V L + +T+S+ A+ S+ + G TM+L++ L L++ S ND AVAI
Sbjct: 72 VALEK-----GDLNSTVTVSRKAASVRGSSFHLEPGETMSLESMLYGLLLPSGNDAAVAI 126
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + K FV+ MN ++ +G THF N HG+ + GH+TTA+D+A+++ + P+
Sbjct: 127 AEHIGGDVKTFVELMNLKAREIGAFNTHFKNPHGLDEPGHFTTAKDLALITRYAL-NIPK 185
Query: 184 YMHYFQIKGLEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + K + I + + NTN + DG+KTG+T +G +VA+A + L
Sbjct: 186 FREIVRTKDIIITEGRRPRHIYNTNRLLRVSEEIDGVKTGYTGKAGRCLVATAERNGMRL 245
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE 295
I+V+L A D + LL+ GF K + ++ V E+
Sbjct: 246 ISVVLDAHD---HFSNTLKLLNYGFSTYRLNKLVQKNNIYAAVPLKGGIINKAVLIAGED 302
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V ++ + ++ + + + +
Sbjct: 303 VALPMRDGEKAHLKLVIPSFVPAPVFKDQVVGEI 336
>gi|220926507|ref|YP_002501809.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Methylobacterium nodulans ORS 2060]
gi|219951114|gb|ACL61506.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Methylobacterium nodulans ORS 2060]
Length = 490
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 97/271 (35%), Positives = 149/271 (54%), Gaps = 4/271 (1%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D ++G V+ PW PAS+TKLMT YV +++ +A + +TIS A+ PP
Sbjct: 34 LVVDVDSGKVLYSQAATDPWYPASITKLMTTYVALDLVRQGRASMDQLLTISPEAASEPP 93
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S FK G+ +TLDNALK+++VKSAND+A AIAE L + F MN T++ LG+ +
Sbjct: 94 SKMGFKPGTQITLDNALKIIMVKSANDVAWAIAEGLAGSVDNFAVLMNETAQRLGMRDSR 153
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
++N +G+ +T+ARDMAIL + DFP F I ++ PN N +G +
Sbjct: 154 WVNPNGLPDPRQWTSARDMAILGRALLRDFPDNRDLFSISAIQFGRAVMPNHNGLLGRYA 213
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
G DGMKTGF CA GFN+VASA + + +I V++G R+ +A L GF +
Sbjct: 214 GVDGMKTGFICAGGFNVVASATRNGRRIITVVMGQPTARERDLKAADLFDYGFGQSSWGG 273
Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
+ + + P++ +C ++
Sbjct: 274 TSLADLPT----SPAAAPPDMRPYICDKRRP 300
>gi|126462962|ref|YP_001044076.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
ATCC 17029]
gi|332558995|ref|ZP_08413317.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
WS8N]
gi|126104626|gb|ABN77304.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
ATCC 17029]
gi|332276707|gb|EGJ22022.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
WS8N]
Length = 389
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 75/340 (22%), Positives = 138/340 (40%), Gaps = 13/340 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ +LS + ++A + + D T V+ + P PAS++KLMT ++F
Sbjct: 6 LFLALILSLVTALPAMAFDTRARAAWVYDVTTHTVLLDKNAHEPLPPASMSKLMTLNMLF 65
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L++ + + T +S A + S ++ T++ + +IV S ND V +AE
Sbjct: 66 EALRDGRVTMETTFAVSTKAKQMGGSKMFVEERDRPTVEELIHGIIVNSGNDACVVVAEG 125
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
L TE F + M +K LG++ + F N+ G GH + D+ IL+ R+ +FP++
Sbjct: 126 LNGTESDFARAMTVRAKALGMTDSTFTNSSGWPDPGHRMSVHDLGILAVRLIEEFPEFYP 185
Query: 187 YFQIKGLEIKGKKYPNTNWA-------VGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
YF K + N N ADG+KTG T +G+ +V SA + +
Sbjct: 186 YFSHTEFNYKDRVPSNANNRNPLLRLGPNGDWTADGLKTGHTQEAGYGLVGSAVQKDGRR 245
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
++ V+ G R + +++ F + + + D + N S +E
Sbjct: 246 IVFVLTGLATEADRAQEGEQIVNWAFRQFVQKTLVTKGQRVTEADVWLGNASRVGLVPAE 305
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+V ++ + E L +
Sbjct: 306 DVKLLVPALVQ-DNVTAEVSYTGPLRAPIAAGQELAELVI 344
>gi|323484906|ref|ZP_08090261.1| hypothetical protein HMPREF9474_02012 [Clostridium symbiosum
WAL-14163]
gi|323693651|ref|ZP_08107850.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
WAL-14673]
gi|323401787|gb|EGA94130.1| hypothetical protein HMPREF9474_02012 [Clostridium symbiosum
WAL-14163]
gi|323502265|gb|EGB18128.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
WAL-14673]
Length = 404
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 85/369 (23%), Positives = 151/369 (40%), Gaps = 34/369 (9%)
Query: 1 MRQFLVIIAMAML--------------------SNIFPFLSIAETNKLPYYTLLDTNTGH 40
M++ +I M+ ++ + + P L++ +TG
Sbjct: 1 MKRLTAVILTIMMVLQTGLYSVYASVPEIPAEAASAMVQAADGPEIQAPDAILIEASTGT 60
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100
VI E D NPAS+TK+MT ++F LK K L + S +A S ++G
Sbjct: 61 VIYEKNADEARNPASVTKIMTLLLIFDALKSGKIHLDDEVVTSAHAKSMGGSQVFLEEGE 120
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
T++ +K +++ S ND +VA+AE + E FV+ MN +K LG+ +F + G+
Sbjct: 121 IQTVETLIKCIVIASGNDASVAMAEYIGGDEATFVKMMNERAKGLGMENANFEDCCGLTD 180
Query: 161 -HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--------YPNTNW--AVGT 209
H +ARD+A+++ + T +P+ +Y I I NTN + T
Sbjct: 181 STTHAMSARDIALMTKELITKYPEIFNYSTIWMENITHVTKQGTKEFGLSNTNKLLKMAT 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN--- 266
G+KTG T + + + A+A + LIAVIL A D R + +LL+ G+ N
Sbjct: 241 NFEVTGLKTGSTSLAKYCLSATARKDGVELIAVILAAPDFKARFGDALTLLNYGYANCRM 300
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
D + ++ + ++ KE ++ +
Sbjct: 301 YRDEDPGSVPPAVIINGIQDTVPAKLNGIFSYLTMKGEDFGGIEKEWVFEDEIKAPVNEG 360
Query: 327 TLLKNKITK 335
+L + +
Sbjct: 361 DILGYLVYR 369
>gi|294084619|ref|YP_003551377.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664192|gb|ADE39293.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 437
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 94/298 (31%), Positives = 151/298 (50%), Gaps = 3/298 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+R F + + ++ + I+P ++A +++ +G V+ D PASLTK+M
Sbjct: 17 LRAFFIFMMLSCGALIWPQQAMASK---YASIVINAESGRVMYARNADAMRYPASLTKIM 73
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y++F +K + + + I +SK A+ PS K G +++ + A+ L+ KSAND+A
Sbjct: 74 TLYLLFEEIKSGRMDMNSRIGVSKLAASRSPSKLYLKPGQSISAEQAIYALVTKSANDVA 133
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE++ TE+ F + M ++ LG+ T F NA G+ TTARDMA L+ ++ D
Sbjct: 134 TAVAEAISGTERNFAKRMTRKARALGMRKTVFKNASGLPHSQQKTTARDMARLAVAMRRD 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ YF + KG+K+ N N + + G DG+KTG+ ASGFN+VAS + LI
Sbjct: 194 FPRLYRYFSTQNFNWKGRKFGNHNKLLAHYSGTDGIKTGYINASGFNLVASVKRHGVRLI 253
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
VI G +R+ +L F + + Q L P S V
Sbjct: 254 GVIFGGKTSRSRDAHMMKILDAQFKRAKPAEISAQVAAVDMPQKLPKSPPKRSNLVKV 311
>gi|52078501|ref|YP_077292.1| D-alanyl-D-alanine carboxypeptidase [Bacillus licheniformis ATCC
14580]
gi|52783865|ref|YP_089694.1| DacA [Bacillus licheniformis ATCC 14580]
gi|319648529|ref|ZP_08002744.1| DacA protein [Bacillus sp. BT1B_CT2]
gi|52001712|gb|AAU21654.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Bacillus licheniformis ATCC 14580]
gi|52346367|gb|AAU39001.1| DacA [Bacillus licheniformis ATCC 14580]
gi|317389377|gb|EFV70189.1| DacA protein [Bacillus sp. BT1B_CT2]
Length = 441
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 78/372 (20%), Positives = 148/372 (39%), Gaps = 42/372 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
++I+A A+ F +S A+ L++ ++G ++ D AS+
Sbjct: 10 IMLIVAFAVTVGAFSPMSTAKAANDPINVDAKAAILVEASSGKILYSKNADQRLPVASMA 69
Query: 58 KLMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
K+MT Y++ + E K + + + + SN +K + T+ + +
Sbjct: 70 KMMTEYLLLEAIHEGKVKWDQKYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQATAI 129
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------V 159
SAN A+A++E + +E KFV+ MN +K LG+ F+NA G+
Sbjct: 130 YSANAAAIALSEIVAGSESKFVELMNKKAKELGMKDFKFVNATGLENKDLHGKHPSGTNA 189
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA----VGTF 210
+ +ARDMA+L+ + +D+P+ + I + + PN N+ V +
Sbjct: 190 NEENEVSARDMALLADHLVSDYPEILDTASIAKTKFRKGTDDEMDMPNWNFMLKGLVQQY 249
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR--NTRNKVSASLLSMGFYNKT 268
G DG+KTG T ++G A+A + +I+V+L A R K + +L F N T
Sbjct: 250 EGVDGLKTGSTDSAGSCFTATAERNGMRVISVVLNAKGDLHTARFKETKKMLDYAFENFT 309
Query: 269 DRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
++ + + + + K N + K +K+
Sbjct: 310 MKEFYAKGAQVKGNETVTVDKGKETEVGIVTEKAFSMPVKNGEEKNYKAKVTLNKDELTA 369
Query: 322 DFEKITLLKNKI 333
+K +
Sbjct: 370 PVKKGEKVGTLT 381
>gi|320173897|gb|EFW49075.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC
74-1112]
Length = 279
Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats.
Identities = 90/262 (34%), Positives = 134/262 (51%), Gaps = 7/262 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A S K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDAWAMGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRNTRNKVSASLL 260
LI+V+LGA R S LL
Sbjct: 257 LISVVLGAKTDRIRFNESEKLL 278
>gi|116254096|ref|YP_769934.1| penicillin-binding protein precursor [Rhizobium leguminosarum bv.
viciae 3841]
gi|115258744|emb|CAK09850.1| putative penicillin-binding protein precursor [Rhizobium
leguminosarum bv. viciae 3841]
Length = 377
Score = 182 bits (460), Expect = 8e-44, Method: Composition-based stats.
Identities = 117/317 (36%), Positives = 181/317 (57%), Gaps = 3/317 (0%)
Query: 2 RQFLVIIAMAMLSNIFP-FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
R F + ++ +S FL+ + + L+D TG V+ W PASLTKLM
Sbjct: 7 RLFAALRPLSFVSAATAVFLTSVPLAQANPHILVDVQTGRVLEHEEAFRKWYPASLTKLM 66
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y VF ++ + L TP+ ISK A+ P + FK G +TLD+ALK+L+VKSAND+A
Sbjct: 67 TVYTVFDAIRAGQISLDTPVVISKRAAAQPAAKMYFKPGQKLTLDSALKILLVKSANDVA 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ T++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ D
Sbjct: 127 VAVAEAIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQY YF ++G + PN N +G F GADGMKTGF CASGFN + SA + ++L+
Sbjct: 187 FPQYAGYFSLEGFTNGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLV 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
+V+LG R +A+LL GF + ++ + +V +I ++C+ +
Sbjct: 247 SVVLGTDSLAARADATANLLQKGFTTQPASNDTLGSLRPYGVGQD--QVTDIGADICSAK 304
Query: 301 KEIINYNTQMKEAKDKE 317
+ T+ + + K
Sbjct: 305 GAKVRSETRDEVGRMKV 321
>gi|327188719|gb|EGE55918.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli
CNPAF512]
Length = 366
Score = 182 bits (460), Expect = 8e-44, Method: Composition-based stats.
Identities = 122/320 (38%), Positives = 184/320 (57%), Gaps = 11/320 (3%)
Query: 1 MR--QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
MR +F V A L+++ + + L+D TG V+ W PASLTK
Sbjct: 1 MRLLRFTVAATAAFLASVSLAQANP-------HILVDVQTGRVLEHEEAFRKWYPASLTK 53
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMT Y VF ++ + L TPI +SK A+ P + FK G +TLD+ALK+L+VKSAND
Sbjct: 54 LMTVYTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSAND 113
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
IAVA+AE++ T++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++
Sbjct: 114 IAVAVAEAVGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALR 173
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
DFPQY YF ++G + PN N +G F GADGMKTGF CASGFN + SA + ++
Sbjct: 174 RDFPQYAGYFSLEGFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRT 233
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
L++V+LG R +A+LL GF + +K + Q +V +I+ ++C+
Sbjct: 234 LVSVVLGTDSLAARADATANLLQKGFTTQFPGNDTLGSLKPYGQGQD--QVTDITADICS 291
Query: 299 TQKEIINYNTQMKEAKDKES 318
+ I T+ + + K +
Sbjct: 292 AKGAKIRSETRDEVGRMKVT 311
>gi|302386799|ref|YP_003822621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
saccharolyticum WM1]
gi|302197427|gb|ADL04998.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
saccharolyticum WM1]
Length = 411
Score = 182 bits (460), Expect = 8e-44, Method: Composition-based stats.
Identities = 87/325 (26%), Positives = 148/325 (45%), Gaps = 14/325 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ P L++ +TG +I E D +PAS+TK+MT ++F L K LT + S
Sbjct: 51 PALQSPSAVLMEASTGQIIYEKNADEKRSPASITKIMTLILIFDALDSGKIKLTDEVVTS 110
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+A S ++G T+D +K +++ S ND +VA+AE + TE +FV+ MN +
Sbjct: 111 AHAKSMGGSQVFLEEGEVQTVDTLIKCIVIASGNDASVAMAEYIAGTEDEFVKMMNERAA 170
Query: 144 NLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--- 199
LG++ THF + G+ + G H TTARD+A++S + +PQ +Y I I
Sbjct: 171 GLGMTNTHFEDCCGLTESGTHVTTARDIALMSRELINKYPQIHNYSTIWMENITHVTKQG 230
Query: 200 -----YPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
NTN + T G+KTG T + + + A+A + LIA I+ A D R
Sbjct: 231 TKEFGLSNTNKLLKMATNFNVTGLKTGSTSVAKYCLSATAEKDGVRLIASIMAAPDYKIR 290
Query: 253 NKVSASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
+ +LL+ G+ N D++ + + + +++T
Sbjct: 291 FADAQTLLNFGYANCKLYEDKEMLPLPEMVVDNGVVDQVPLKYGGSFSYLSLKGEDFSTI 350
Query: 310 MKEAKDKESHFIDFEKITLLKNKIT 334
K+ + + S E+ + I
Sbjct: 351 EKKLELEPSVSAPVEEGQKAGSLIY 375
>gi|74316284|ref|YP_314024.1| serine-type D-ala-D-ala carboxypeptidase [Thiobacillus
denitrificans ATCC 25259]
gi|74055779|gb|AAZ96219.1| serine-type D-ala-D-ala carboxypeptidase [Thiobacillus
denitrificans ATCC 25259]
Length = 377
Score = 182 bits (460), Expect = 8e-44, Method: Composition-based stats.
Identities = 85/342 (24%), Positives = 155/342 (45%), Gaps = 9/342 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M+ + +A + ++ ++ + ++D +G +A + PD P PASLT+LM
Sbjct: 7 MKFLWLTLAWLLSASA---IAAPTGIAARAWVIVDQTSGRELASHQPDLPLAPASLTQLM 63
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T YV+ ++ L + + A+E + K G + +D L+ ++V+SA+D
Sbjct: 64 TVYVLLGDIRRNALRLDAEVRVPDAAAEADGARVFLKPGERVRVDTLLRAILVQSASDAT 123
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
V +A + +E FV+ MN + LG+ THF NA G+ Q GH ++ARD+A+L + +
Sbjct: 124 VTLATATDGSEAAFVERMNREAARLGMKRTHFANATGLAQPGHVSSARDLAVLGRALLRE 183
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P F K + G Y N N + G+K G SG++ VASA +G+Q +
Sbjct: 184 HPAQQALFAQKEFTLDGLTYYNANRLLWRDGTVTGLKVGRNPESGYSAVASAQRGEQRRV 243
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEE- 295
AV+LGA R + + LL+ GF + Y+ + ++
Sbjct: 244 AVVLGARSDAQRTQDALRLLNYGFEKFDSVLLYRARQPVKVVRLYRGTRQSVGIGFEQDF 303
Query: 296 -VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + + ++ + + ++I LL+ + K
Sbjct: 304 HLLAPRGSLPRVKAEIVTQRPIVAPIHKGQRIGLLRLTLDGK 345
>gi|229603861|ref|YP_002864665.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0248]
gi|229268269|gb|ACQ49906.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus anthracis
str. A0248]
Length = 438
Score = 182 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 7 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 307 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQE 366
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 367 APIKKGAALGQMVI 380
>gi|194018065|ref|ZP_03056670.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus pumilus ATCC
7061]
gi|194010257|gb|EDW19834.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus pumilus ATCC
7061]
Length = 441
Score = 182 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 43/377 (11%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++Q +V I+A+A++ F +S L++ +TG ++ +
Sbjct: 6 LKQLMVSILALALIVTAFTPMSKAKAAEDPFNVNAKAAILIEASTGKILYSKNAEQRLPI 65
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS+ K+MT Y++ + E K + + + + SN +K + T+ +
Sbjct: 66 ASMAKMMTEYLLLEAIAEGKVKWDQTYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQ 125
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ SAN A+ +AE + +E KFV+ MN +K LGL+ F+NA G+
Sbjct: 126 ATAIYSANAAAIGLAEVIAGSESKFVEKMNAKAKELGLTNYKFVNATGLENKDLHGKQPK 185
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA---- 206
+A+DMA+L+ + D P+ + I + + PN N+
Sbjct: 186 GTGPDEESEVSAKDMALLAQHLIKDHPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGL 245
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGF 264
V + G DG+KTG T ++G + +A QGD +IAVIL A R V+ L F
Sbjct: 246 VKEYKGVDGLKTGSTDSAGSSFTGTAKQGDMRVIAVILNAKGNLHTARFDVAKKLFDYAF 305
Query: 265 YNKTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
N T ++ + + E K + + K +K
Sbjct: 306 KNFTMKEMYKKGQQIKGHENIEVDKGKDKEVPVVTKEAFSVPVKNGDEKSFKAKVNIEKT 365
Query: 318 SHFIDFEKITLLKNKIT 334
+K T + T
Sbjct: 366 KLEAPIKKGTKVGMLTT 382
>gi|65317476|ref|ZP_00390435.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A2012]
Length = 443
Score = 182 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTMLTLVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKFKWDQKIKVSEYAYKVSQDAXLSNVALENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 312 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKEVYKTELKESSKGQE 371
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 372 APIKKGAALGQMVI 385
>gi|212637859|ref|YP_002314379.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
WK1]
gi|212559339|gb|ACJ32394.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
WK1]
Length = 447
Score = 182 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 71/378 (18%), Positives = 134/378 (35%), Gaps = 44/378 (11%)
Query: 2 RQFLV-IIAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ F++ I+AM P + AE + L++ TG ++ + D AS+
Sbjct: 11 KSFIISIVAMFSFMMTLPQQTKAEEDVLNIEADAAILVEAETGKILYQKNIDAVLGIASM 70
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MT Y++ + E + T+S+ + ++ L A
Sbjct: 71 TKMMTEYLLLEAIHEGRVKWDQEYTVSEYVYQISQKRDLSNVPLRKDGKYTVRELYEAMA 130
Query: 117 NDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------- 158
A ++ + +E FV+ MN ++ LGL F+NA G+
Sbjct: 131 IYSANGATVAIAEIVGGSETNFVKMMNEKAQELGLKDYKFVNATGLNNKDLGGLHPAGSG 190
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGT 209
+ +AR +A L++ + +FP+ + I + K N NW V
Sbjct: 191 DNEENVMSARAVATLAYHLYHEFPEILETASIPRKYFREGTDDQIKMDNWNWMLPGLVAA 250
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-----TRNKVSASLLSMGF 264
+ G DG+KTG+T +G+ +A + I V++ A +R + + +L F
Sbjct: 251 YEGVDGIKTGYTEFAGYCFTGTAERNGMRFITVVMNAKTNGKGTYLSRFEQTRKMLDYAF 310
Query: 265 YNKTDRKKINYI-------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
N T +K + + + K + +KE
Sbjct: 311 SNYTVQKLYPKGYTTKKHKTVTVKKGKEKEVAIATKQPLSLVIKRGEEKKYKPVVVIEKE 370
Query: 318 SHFIDFEKITLLKNKITK 335
+ +K + K
Sbjct: 371 TLTAPVKKGQKIGYMYVK 388
>gi|229100275|ref|ZP_04231166.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-29]
gi|228683170|gb|EEL37157.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-29]
Length = 453
Score = 182 bits (460), Expect = 9e-44, Method: Composition-based stats.
Identities = 74/375 (19%), Positives = 136/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ + D
Sbjct: 23 KRFIAIVTVLALFCSIVVTSGRASAETVPAIDVEAGSAILIEANSGKILYQKNADESLAI 82
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 83 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 142
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 143 AMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHPE 202
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFPQ ++ +I + N NW
Sbjct: 203 GTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 262
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 263 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 322
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ + V + V + N + + +
Sbjct: 323 FEVKNVYGKDAVVKGHETVRVANAKDKDVVVQTKQAVALPMPKGNNDVYKKEFKVSNKEQ 382
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 383 EAPIKKGVTISKMII 397
>gi|116250789|ref|YP_766627.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Rhizobium leguminosarum bv. viciae 3841]
gi|115255437|emb|CAK06513.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
protein) [Rhizobium leguminosarum bv. viciae 3841]
Length = 464
Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 96/323 (29%), Positives = 154/323 (47%), Gaps = 8/323 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR+ L + L+ P ++A +LD TG V+A D +PASLTK+M
Sbjct: 38 MRKLLAAVLTVTLAVSAPLAALA----GNASLILDARTGKVLASENADTLNHPASLTKMM 93
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A
Sbjct: 94 TLYLTFEALKRGKITWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIVKSANDAA 153
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+ E L +E F + M ++ LG+S T F+NA G+ TTARDM+ L+ + +
Sbjct: 154 SAMGEKLAGSESGFARVMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKN 213
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+P F +G+ N + + G DG+KTG+T ASGFN+V++ G++ ++
Sbjct: 214 YPNEYRLFSTASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 273
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD----RKKINYIIKDFYQQNLSNEVPNISEEV 296
V+LG +R+ A LL + + + ++ + + E ++ +
Sbjct: 274 GVVLGGRTARSRDAKMAGLLDRYLGRASSSGGAKLVASVGAREPVEVASAAEASDVPVPL 333
Query: 297 CTTQKEIINYNTQMKEAKDKESH 319
+ + A D
Sbjct: 334 NAPRPADDLAAKSLAYADDAVVP 356
>gi|229103097|ref|ZP_04233784.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-28]
gi|228680286|gb|EEL34476.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-28]
Length = 453
Score = 182 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 74/375 (19%), Positives = 134/375 (35%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ + D
Sbjct: 23 KRFIAIVTVITLFCSIVVTSGRASAETVPAIDVEAGSAILIEANSGKILYQKNADESLAI 82
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 83 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 142
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+NA G+
Sbjct: 143 AMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMKHYKFVNATGLTNQDLKGYHLE 202
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N NW
Sbjct: 203 GTNLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMVNFNWMLKGL 262
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 263 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDETKKLYDYGFAN 322
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+K + V + V + + +
Sbjct: 323 FEVKKVYGKDAVVKGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVPNTEQ 382
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 383 EAPIKKGVTISKMII 397
>gi|126733463|ref|ZP_01749210.1| Probable penicillin-binding protein [Roseobacter sp. CCS2]
gi|126716329|gb|EBA13193.1| Probable penicillin-binding protein [Roseobacter sp. CCS2]
Length = 464
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 103/311 (33%), Positives = 152/311 (48%), Gaps = 5/311 (1%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
T ++D TG V+ D +PASLTK+MT YV F ++ + L TP+ IS
Sbjct: 3 ATAAPYAAMVMDARTGEVLHSRNADTQLHPASLTKMMTLYVAFQAIERGEITLDTPVRIS 62
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ A+ PPS + G T+ L L+ VKSAND A AI E++ +E F MN T++
Sbjct: 63 RLAASEPPSKLGLRSGQTIRLRFLLRAAAVKSANDAATAIGEAISGSEDAFATRMNRTAR 122
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ T+F NAHG+ Q GH +TARDM++L + DFPQY + F + + + +T
Sbjct: 123 AMGMRNTNFRNAHGLTQSGHLSTARDMSVLGRHVIYDFPQYYNLFSRRSADAGVARVRHT 182
Query: 204 NWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N ++ G DG+KTG+T A+GFN+VASA +G + +IA + G + RN L+ M
Sbjct: 183 NRRWLDSYAGGDGIKTGYTRAAGFNLVASAQRGQERVIATVFGGSSTSARNARITELMDM 242
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEV----PNISEEVCTTQKEIINYNTQMKEAKDKES 318
GF R I SN P V I + A +E
Sbjct: 243 GFNRAPSRATIRRPNPPAAMLTSSNSQGQVNPGKIVRVSGLITRSIRPTARPVAAPVQED 302
Query: 319 HFIDFEKITLL 329
+ ++
Sbjct: 303 VLVAAVDADVI 313
>gi|150396511|ref|YP_001326978.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
WSM419]
gi|150028026|gb|ABR60143.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
WSM419]
Length = 384
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 72/342 (21%), Positives = 132/342 (38%), Gaps = 12/342 (3%)
Query: 1 MRQFLVI-IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M+ + A++S + A K L+D TG V+ D P PASL KL
Sbjct: 3 MKWLAAVGFLAAIVSGQAVAQTPAFDTKAKQIYLVDAETGTVLFSRDEDAPVPPASLAKL 62
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVK 114
M VVF L + + T +S++A S S + + + ++ V+
Sbjct: 63 MAMKVVFEALDKGELTPDTNFLVSEHAWRTGGAPSGTSTMFAAIKSRIRVADLIQGATVQ 122
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
AND + +AE + +E F + M ++ +GL F NA G+ G+ T R++ L+
Sbjct: 123 LANDACIILAEGMAGSEPAFAERMTKRAREIGLPVATFKNATGLPHPGNTITMRELVALA 182
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ P Y + E N N + +G DG+ TGF GF++ AS +
Sbjct: 183 RHLYEAHPNYYPLYSQPEFEWNKILQRNKNPLIAAKIGVDGLATGFAEGFGFSVAASMQR 242
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPN 291
G++ + + G R + S +L R+ + + + V
Sbjct: 243 GERRVYLAMSGLESEKERIEESRRVLDWAMTAFEKRRIFSDGETIGEASVYGGADSRVAL 302
Query: 292 IS---EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ +V K ++ + +++ ++K
Sbjct: 303 VAGGPVDVLLPVKNSERLTARIVYKWPLNAPVAAGQQVGVVK 344
>gi|13470655|ref|NP_102224.1| penicillin binding protein [Mesorhizobium loti MAFF303099]
gi|14021397|dbj|BAB48010.1| penicillin binding protein [Mesorhizobium loti MAFF303099]
Length = 388
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 73/322 (22%), Positives = 132/322 (40%), Gaps = 11/322 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
K ++D +TG V+ D P PAS+ KLMT VVF+ +K + L +S
Sbjct: 30 FETKATQAFMIDADTGTVLFSKDADKPIPPASMAKLMTMEVVFNAIKSGRLKLDDTFVVS 89
Query: 84 KNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+NA S K S + L++ ++ + V++AND + IAE + +E F M
Sbjct: 90 ENAWRKGGAPSGTSTMFAKLKSAIRLEDLIQGVTVQAANDGCIVIAEGMAGSEDNFAAQM 149
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
++ +GL + F+N+ G+ G TT R++A L+ + D+P + Y+ +K
Sbjct: 150 TERARQIGLKTSTFVNSTGLPADGQQTTVRELAQLALHLWRDYPDFYRYYGLKDFTWNKI 209
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
N N + +GADG+ G + +GF IVAS +I + G + R + +
Sbjct: 210 SQKNRNPLLAMDIGADGLAVGASEVAGFGIVASVSHNGTRVIMAMNGLANDKERAEEARK 269
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEIINYNTQMKE 312
LL G + + Q ++ ++ ++
Sbjct: 270 LLDWGARSFEKTEIFAKDEVVGEAQVFGGAKSGVTLKAKGPIDIFLPITNRDKLTARIVY 329
Query: 313 AKDKESHFIDFEKITLLKNKIT 334
+ + + + L+ I
Sbjct: 330 TGPVAAPVEEGQPVGALRVWIG 351
>gi|332653043|ref|ZP_08418788.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
D16]
gi|332518189|gb|EGJ47792.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
D16]
Length = 367
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 79/314 (25%), Positives = 132/314 (42%), Gaps = 13/314 (4%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ T L++ +G V+ D P AS TKLMTA V L +
Sbjct: 25 AAEVTVSAQSAVLMEAESGRVLYAKDADTPRLIASTTKLMTALVALESGH----SLEEDV 80
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
TI A+ S+ K G T+ L+ L +++ S ND A A+A + + + F Q MN
Sbjct: 81 TIPAEAAGVEGSSLYLKTGETVKLETLLYGMLLHSGNDAATAVALTCAGSLEAFAQKMNE 140
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
S+ LG++ +HF N G+ HY++A DMA+L+ P+ + ++G+ +
Sbjct: 141 KSQQLGMTNSHFTNPTGLDGEEHYSSAYDMALLARACLA-VPELKEITATRSTTMEGRTF 199
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N + + G GMKTG+T A+G +V++A + +LIAV L A A++L
Sbjct: 200 VNHNKLLWRYEGCVGMKTGYTQAAGRTLVSAAERDGMTLIAVTLNAPSD---WADHAAML 256
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVP----NISEEVCTTQKEIINYNTQMKEAKDK 316
GF + + + + VP E + T+++
Sbjct: 257 DYGFEHYHMEEAVKAGQSLCSLPVSGSLVPFVSLKAEETLRWPVGPGETLETRLELG-GL 315
Query: 317 ESHFIDFEKITLLK 330
S + +
Sbjct: 316 TSLEAPVQAGVPMG 329
>gi|221639986|ref|YP_002526248.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
KD131]
gi|221160767|gb|ACM01747.1| Serine-type D-Ala-D-Ala carboxypeptidase precursor [Rhodobacter
sphaeroides KD131]
Length = 389
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 13/340 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ +L + ++A + + D T V+ + P PAS++KLMT ++F
Sbjct: 6 LFLALILGLVTALPALAFDTRARAAWVYDVTTHTVLLDKNAHEPLPPASMSKLMTLNMLF 65
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L++ + + T +S A + S ++ T++ + +IV S ND V +AE
Sbjct: 66 EALRDGRVTMETTFAVSTKAKQMGGSKMFVEERDRPTVEELIHGIIVNSGNDACVVVAEG 125
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
L TE F + M +K LG++ + F N+ G GH + D+ IL+ R+ +FP++
Sbjct: 126 LNGTESDFARAMTVRAKALGMTDSTFTNSSGWPDPGHRMSVHDLGILAVRLIEEFPEFYP 185
Query: 187 YFQIKGLEIKGKKYPNTNWA-------VGTFLGADGMKTGFTCASGFNIVASA-IQGDQS 238
YF K + N N ADG+KTG T +G+ +V SA + +
Sbjct: 186 YFSHTEFNYKDRVPSNANNRNPLLRLGPNGDWTADGLKTGHTQEAGYGLVGSAVQKDGRR 245
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISE 294
++ V+ G R + +++ F + + + D + N S +E
Sbjct: 246 IVFVLTGLATEADRAQEGEQIVNWAFRQFVQKTLVTKGQRVTEADVWLGNASRVGLVPAE 305
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+V ++ + E L +
Sbjct: 306 DVKLLVPALVQ-DNVTAEVSYTGPLRAPIAAGQELAELVI 344
>gi|295091220|emb|CBK77327.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
saccharolyticum K10]
Length = 404
Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats.
Identities = 85/337 (25%), Positives = 143/337 (42%), Gaps = 14/337 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+S + P L++ +TG V+ E D NPAS+TK+MT + F LK
Sbjct: 33 VSAPASAALEGPQIQAPCGILMEASTGTVLYEKNADEARNPASVTKIMTLLLTFDALKSG 92
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
K LT + S +A S ++G T++ +K +++ S ND +VA+AE + E
Sbjct: 93 KIALTDEVVTSAHAKSMGGSQVFLEEGEVQTVETLIKCIVIASGNDASVAMAEYIAGDEA 152
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
FVQ MN +K LG+ +F + G+ H +ARD+A+++ + T +P+ +Y I
Sbjct: 153 SFVQMMNERAKGLGMEQANFEDCCGLTDSASHAMSARDIALMTRELITKYPEIFNYSTIW 212
Query: 192 GLEIKGKK--------YPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
I NTN + T G+KTG T + + + A+A + LIA
Sbjct: 213 MENITHVTKQGTKEFGLSNTNKLLKMATNFEVTGLKTGSTSTAKYCLSATARKDGVELIA 272
Query: 242 VILGALDRNTRNKVSASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
VIL A D R + +LL+ G+ N TD I +
Sbjct: 273 VILAAPDYKARFNDAVTLLNYGYANCRLYTDEDVGEIPEVQILGGVQDTVPVRIDKPFSY 332
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ KE + ++ ++ + +
Sbjct: 333 LGTSGEDFSGIEKEWIFETELKAPVQEGEIVGKLVYR 369
>gi|169825632|ref|YP_001695790.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus sphaericus
C3-41]
gi|168990120|gb|ACA37660.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus
sphaericus C3-41]
Length = 443
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 68/367 (18%), Positives = 131/367 (35%), Gaps = 43/367 (11%)
Query: 13 LSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ P + AET + L+D ++G ++ E D AS+TK+MT Y++ +
Sbjct: 21 IFAGIPAKASAETDLGLTVDAAILIDADSGKILYEQNADTSLGIASMTKMMTEYLLLDAI 80
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
++ + + ++ L A A A ++ +
Sbjct: 81 DAGTVKWDQEYHVTDYTYRMSQNRALSNVPLRRDGSYTIRELYEAMAIYSANAATVAIAE 140
Query: 130 TEKK----FVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMA 171
T F++ MN ++ LGL F+NA G+ + + A+ +A
Sbjct: 141 TIAGTETEFLKLMNKKAEELGLEGYKFVNATGLNNADLFGMHPAGTGPEDENVMPAKYVA 200
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA----VGTFLGADGMKTGFTC 222
L++ + D P+ + QI + N N+ V + G DG+KTG T
Sbjct: 201 KLAYHLLKDHPKVLETSQITKKTFREGTEDAIEMSNWNFMLPGLVFEYQGVDGLKTGTTN 260
Query: 223 ASGFNIVASAIQGDQSLIAVIL------GALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
+G +A + LIAV++ G R +A L + GF + ++ +
Sbjct: 261 FAGHCFTGTAERNGTRLIAVVMKAVDASGQGSYKARFDATAKLFNYGFSQFSKQEILPAN 320
Query: 277 -------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + E + K + K DK+S +K T++
Sbjct: 321 YTFKDQKTVKVTKGKEDKVEIAVKEPISFMIKSSDKDLYKPKLVLDKKSLEAGVKKDTVV 380
Query: 330 KNKITKK 336
+ ++
Sbjct: 381 GKVVIER 387
>gi|188585838|ref|YP_001917383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350525|gb|ACB84795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 408
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 141/343 (41%), Gaps = 13/343 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L+ + + + L++ TG I EN + W PASLTK+MT +
Sbjct: 12 LLFLMIVNPLLSPSVSAEEFDFDAESVILIEAETGRTIYENNAEKSWPPASLTKVMTLVI 71
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
L E + L +S A++ S ++ +T+++ L + V SAND VA+A
Sbjct: 72 GLEALNEGELELEETTRVSAKANQTGGSQMFLRENQEVTIEDLLTGIAVVSANDGCVALA 131
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + + FV MN ++ +GL T+F + HG+ G Y ARD+A LS + P+
Sbjct: 132 EHMEGSVNNFVNRMNEKAEEIGLENTNFKDPHGLASDGQYMNARDVARLSQYAVNETPKI 191
Query: 185 MHYFQIKGLEIKGK-KYPNTNWA--------VGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ I G + + N N ++ G DG+KTG +G+N V +A +
Sbjct: 192 LELESITGFQFNIESTQYNRNLMLPDHPQTTRYSYEGTDGLKTGQIEEAGYNFVGTAQRD 251
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPN 291
D LIAV+LGA ++ R ++ L GF K + + D + +
Sbjct: 252 DMRLIAVVLGAEEQTERFNITRQLFDHGFSEYQKIKLFDEGDELEQVDVKDGSERQTMAI 311
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
E T K + + E +K L +
Sbjct: 312 SETEANVTTKFDNDQELEFVFQPKDEELRAPIQKGEYLGELLV 354
>gi|229161434|ref|ZP_04289415.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus R309803]
gi|228621971|gb|EEK78816.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus R309803]
Length = 416
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 72/360 (20%), Positives = 129/360 (35%), Gaps = 34/360 (9%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ A + L++ N+G ++ E D AS+TK+M+ Y+V
Sbjct: 1 MVVTFGKASAETVSAIDVEAGSAILVEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIA 124
++ K + IS+ A + S + T+ + + + SAN +A+
Sbjct: 61 VENGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDM 170
E + E FV+ MN+ SK G+ F+N+ G+ + +ARD
Sbjct: 121 EEIAGKEADFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDC 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA----VGTFLGADGMKTGFT 221
AIL+ R+ DFP+ + +I + N NW + + G DG+KTG T
Sbjct: 181 AILAQRLIQDFPKILDTAKIPKKTFQQGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTT 240
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+G + + LI+V++ A R + L GF N +K
Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKANSHAARFDETKKLYDYGFANFEMKKVYGKDAVVNG 300
Query: 282 QQ-------NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + V + V + + + E +K + I
Sbjct: 301 NETVRVANAKDKDVVVQTKQAVSLPIPKNNKDVYKKEFKVLNEEQEAPIKKGVTISKMII 360
>gi|229165003|ref|ZP_04292801.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH621]
gi|228618455|gb|EEK75482.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH621]
Length = 443
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 73/374 (19%), Positives = 144/374 (38%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTVLTLAFGVFAPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKISQDASLSNVALENGGLYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+AE++ E FV+ MN+ +K LGL F+N+ G+
Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKAKELGLKNYKFVNSTGLTNKDLKGMHPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I + +K N NW V
Sbjct: 192 GTTPDEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKVFRPEKEKFGMSNWNWMLKGLV 251
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+K ++ + E + V + + + + +
Sbjct: 312 EMKKMYEKGSSVKGKETVRVENAKDKDVAVQTKQAVSLPVPKGSKDVYKTEFKEGNKGQE 371
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 372 APLKKGVALGQMVV 385
>gi|229159188|ref|ZP_04287214.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus R309803]
gi|228624269|gb|EEK81069.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus R309803]
Length = 443
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 144/374 (38%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTMLALVCSMLLPYSNASAETGSALNIEAGAAILVEANSGKILYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+AE++ E FV+ MNN +K LGL F+N+ G+
Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNNKAKELGLKNYKFVNSTGLTNKDLKGMHPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GKKYPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I + K N NW
Sbjct: 192 GTTPDEENKMSAKDVATLAQHLLKDYPKVLDTAKIPMKVFRPEKEQFKMLNWNWMLKGLS 251
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + LI+V++ R R + L GF N
Sbjct: 252 KAYDGVDGLKTGSTPEAGECFTGTVERNGMRLISVVIKTNSRQARFDETKKLYDYGFANF 311
Query: 268 TDRKKINYIIKDFYQQ-------NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + + V + + + + +
Sbjct: 312 EMKQMYKKDSSVKGQETLRVENAKDKDVAVQTKQAVSLPMPKGSKDIYKTELKEANKGQE 371
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 372 APIKKGAALGQMVI 385
>gi|283795540|ref|ZP_06344693.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
gi|291077207|gb|EFE14571.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
Length = 404
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 85/337 (25%), Positives = 144/337 (42%), Gaps = 14/337 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+S + P L++ +TG V+ E D NPAS+TK+MT + F LK
Sbjct: 33 VSAPASAALEGPQIQAPCGILMEASTGTVLYEKNADEARNPASVTKIMTLLLTFDALKSG 92
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
K LT + S +A S ++G T++ +K +++ S ND +VA+AE + E
Sbjct: 93 KIALTDEVVTSAHAKSMGGSQVFLEEGEVQTVETLIKCIVIASGNDASVAMAEYIAGDEA 152
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
FVQ MN +K LG+ +F + G+ H +ARD+A+++ + T +P+ +Y I
Sbjct: 153 SFVQMMNERAKGLGMEQANFEDCCGLTDSASHAMSARDIALMTRELITKYPEIFNYSTIW 212
Query: 192 GLEIKGKK--------YPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
I NTN + T G+KTG T + + + A+A + LIA
Sbjct: 213 MENITHVTKQGTKKFGLSNTNKLLKMATNFEVTGLKTGSTSTAKYCLSATARKDGVELIA 272
Query: 242 VILGALDRNTRNKVSASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
VIL A D R + +LL+ G+ N TD + I +
Sbjct: 273 VILAAPDYKARFNDAVTLLNYGYANCRLYTDEDVGEIPEVQILRGVQDTVPVRIDKPFSY 332
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ KE + ++ ++ + +
Sbjct: 333 LGTSGEDFSGIEKEWIFETELKAPVQEGEIVGKLVYR 369
>gi|299542091|ref|ZP_07052407.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus
fusiformis ZC1]
gi|298725406|gb|EFI66054.1| D-alanyl-D-alanine carboxypeptidase precursor [Lysinibacillus
fusiformis ZC1]
Length = 443
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 73/370 (19%), Positives = 139/370 (37%), Gaps = 45/370 (12%)
Query: 11 AMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ P + AET + L+D ++G ++ E D AS+TK+MT Y++
Sbjct: 19 FSIFAGIPAKANAETDLGLTVDAAILIDADSGKILFEQNADTSLGIASMTKMMTEYLLLD 78
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+ K ++ + + ++ L A A A ++
Sbjct: 79 AIDAGKVKWDQEYHVTDYTYRMSQNRALSNVPLRRDGSYTIRELYEAMAIYSANAATVAI 138
Query: 128 CKTEKK----FVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARD 169
+T F++ MN ++ LGL F+NA G+ + + A+
Sbjct: 139 AETIAGSETEFLKLMNKKAEELGLEGYKFVNATGLNNADLFGMHPSGTGPEDENVMPAKS 198
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA----VGTFLGADGMKTGF 220
+A L++ + D P+ + +I + K N N+ V + G DG+KTG
Sbjct: 199 VAKLAYHLLKDHPKVLETSKIAKKTFREGTEDAIKMSNWNFMLPGLVYEYQGVDGLKTGT 258
Query: 221 TCASGFNIVASAIQGDQSLIAVIL------GALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
T +G +A + LIAV++ G R +A L + GF + ++ +
Sbjct: 259 TNFAGHCFTGTAERNGTRLIAVVMKAVDAKGQGSYEARFDATAKLFNYGFSQFSKQEIL- 317
Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK--------DKESHFIDFEKI 326
F Q ++V KE I++ + + DK+S D +K
Sbjct: 318 PGNYTFKNQKTVKVTKGKEDKVSIAVKEPISFMIKSSDKDLYKPTLVLDKKSLEADVKKD 377
Query: 327 TLLKNKITKK 336
T++ + ++
Sbjct: 378 TVVGKVVIER 387
>gi|254294362|ref|YP_003060385.1| serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC
49814]
gi|254042893|gb|ACT59688.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hirschia baltica ATCC
49814]
Length = 322
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 93/265 (35%), Positives = 140/265 (52%), Gaps = 6/265 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + +A+++ + + ++D +T V+ D P PAS+TK+M
Sbjct: 11 IKKLITALALSLCVIA------PASAEKYASYVIDIDTAKVLHSRNADDPRFPASITKVM 64
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+VF LK + MLT + IS+ AS+ PPS K G T++++ A+ L+ KSAND+A
Sbjct: 65 TLYMVFDALKAGELMLTDELKISREASKQPPSKLYLKPGETISVETAINALVTKSANDVA 124
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
V IAE L +E +F M ++ LGL T F NA G+ +TA D+AIL + D
Sbjct: 125 VVIAERLGGSETRFAALMTAKARQLGLKNTRFKNASGLPNAAQLSTAHDLAILGEAMLRD 184
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
Y YF + Y N N + + G DG+KTG+T ASGFN++ASA + +I
Sbjct: 185 HADYYDYFSTTEFKYGRANYKNHNKLLESVRGVDGIKTGYTRASGFNLLASAERDGHRVI 244
Query: 241 AVILGALDRNTRNKVSASLLSMGFY 265
AV+LG +RN LL F
Sbjct: 245 AVMLGGATSKSRNAHVTDLLEAAFD 269
>gi|222093783|ref|YP_002527831.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
gi|221237829|gb|ACM10539.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
Length = 435
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 4 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 63
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 64 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 123
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 124 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 183
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 184 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 243
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 244 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 303
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 304 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQE 363
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 364 APIKKGAALGQMVI 377
>gi|187779539|ref|ZP_02996012.1| hypothetical protein CLOSPO_03135 [Clostridium sporogenes ATCC
15579]
gi|187773164|gb|EDU36966.1| hypothetical protein CLOSPO_03135 [Clostridium sporogenes ATCC
15579]
Length = 407
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 85/325 (26%), Positives = 140/325 (43%), Gaps = 14/325 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L++ TG VI E + PAS+TK+MT + + K LT +TIS+
Sbjct: 53 DVEAKSALLIEPTTGKVIYEKNSHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISE 112
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NA + S G T++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++
Sbjct: 113 NAKKMGGSTMLLDVGEERTVEELLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQK 172
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD----FPQYMHYFQIKGLEIKGKKY 200
L + T F N G+ + GH T+A D++I+S + + I
Sbjct: 173 LNMKDTSFKNCTGLSEEGHKTSAYDISIMSRELLKHKQILKYTGTYMETISEGRKSPIGL 232
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N V F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L+
Sbjct: 233 VNHNKLVRFFKGCDGLKTGFTDEAKYCISATATRDGVRMLAVIMGAPTYKIRNKDASKLM 292
Query: 261 SMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK----- 311
+ GF + + + + EE+ ++ K
Sbjct: 293 NYGFSKFQCKTIVKKGDVISKIPLNSKGDKYFMAKSCEELNAIVEKGKKTKITNKCIIDE 352
Query: 312 -EAKDKESHFIDFEKITLLKNKITK 335
+ + K + + + N I K
Sbjct: 353 NKKEYKINEEVGICEFYSDGNLIGK 377
>gi|227822156|ref|YP_002826127.1| penicillin binding protein [Sinorhizobium fredii NGR234]
gi|227341156|gb|ACP25374.1| penicillin binding protein [Sinorhizobium fredii NGR234]
Length = 384
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 73/342 (21%), Positives = 132/342 (38%), Gaps = 12/342 (3%)
Query: 1 MRQFLVI-IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M+ F ++ I A++ + A K L+D TG V+ D P PASL KL
Sbjct: 3 MKWFAIVGILAAIVQGEAAAQTPAFDTKAKQIYLIDAETGTVLFARGEDEPVPPASLAKL 62
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVK 114
M VVF L++ + +S++A S S + + + ++ V+
Sbjct: 63 MAMEVVFEALEKGELTQEAVFPVSEHAWRTGGAPSGTSTMFAAIKSQVRVADLIQGATVQ 122
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
AND + +AE + +E F Q MN +++LG+ F NA G+ G+ T R++ LS
Sbjct: 123 LANDACIILAEGMAGSEAAFAQRMNARARDLGMPVATFKNATGLPDPGNRVTMRELVTLS 182
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
++ + + E N N + +G DG+ TGF GF++ AS +
Sbjct: 183 RHLREAHANFYRLYAQPEFEWNKILQRNKNPLIAANVGVDGLATGFAEGFGFSLAASMQR 242
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS- 293
GD+ + + G R + S +L N R+ +++
Sbjct: 243 GDRRVYLAMGGLETDKERTEESRRVLDWAMTNFEKRRIFANGETIGEASIYGGAASHVAL 302
Query: 294 -----EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+V ++ + + + ++K
Sbjct: 303 VAGGPVDVLLPVNNPERLTARIVYKWPLTAPVAAGQLVGVVK 344
>gi|188580422|ref|YP_001923867.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
BJ001]
gi|179343920|gb|ACB79332.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
BJ001]
Length = 499
Score = 181 bits (458), Expect = 1e-43, Method: Composition-based stats.
Identities = 96/272 (35%), Positives = 149/272 (54%), Gaps = 5/272 (1%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D +G V+ PW PAS+TKLMT YV +++ K L T +T+S A+ PP
Sbjct: 31 LVVDAESGKVLYSQGATDPWYPASITKLMTTYVALDMVRQGKVSLDTLLTVSPAAAAEPP 90
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S FK G+ +TLDNALK+++VKSAND++ AI E L + + F MN T+ +G+ +
Sbjct: 91 SKMGFKPGTQITLDNALKIIMVKSANDVSWAIGEGLGGSVEGFADMMNETAHRIGMRESR 150
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ N +G+ + +T+ARDMAIL+ + DFP F I ++ N N +G +
Sbjct: 151 WYNPNGLPEPRQWTSARDMAILARALMRDFPNQQALFSISAIQFGKSVMANHNGLLGRYP 210
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-YNKTDR 270
GADGMKTGF C+ GFN+VA+A +G + +IAV++G R+ +A L GF +
Sbjct: 211 GADGMKTGFICSGGFNVVATATRGGRRIIAVVMGQPSARERDIKAADLFDYGFGQSAGWT 270
Query: 271 KKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
+ + P++ +C +K
Sbjct: 271 APTLESLPP----SNVAAPPDMRPYICDKRKP 298
>gi|170744628|ref|YP_001773283.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
4-46]
gi|168198902|gb|ACA20849.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
4-46]
Length = 506
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 93/233 (39%), Positives = 138/233 (59%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D ++G V+ PW PAS+TKLMT YV +++ +A + +TIS A+ PP
Sbjct: 34 LVVDVDSGKVLYSQAATDPWYPASITKLMTTYVALDLVRQGRASMDQLLTISAEAAAEPP 93
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S F+ G+ +TLDNALK+++VKSAND+A AI E+L + F MN T++ LG+ +H
Sbjct: 94 SKMGFRPGTQLTLDNALKIIMVKSANDVAWAIGENLGGSIDNFAALMNETAQRLGMRDSH 153
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ N +G+ +T+ARDMAIL + DFP+ F I ++ N N +G +
Sbjct: 154 WYNPNGLPDPRQWTSARDMAILGRALLRDFPENRDLFSISAIQFGRAVMANHNGLLGRYA 213
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
G DGMKTGF CA GFN+VASA + + +I V++G R+ +A L GF
Sbjct: 214 GVDGMKTGFICAGGFNVVASATRNGRRIITVVMGQPTARERDLKAADLFDYGF 266
>gi|229077103|ref|ZP_04209808.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock4-18]
gi|228706203|gb|EEL58487.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock4-18]
Length = 453
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 74/375 (19%), Positives = 134/375 (35%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ ++G ++ E D
Sbjct: 23 KRFIAIVTVITLFCSIVVAFGRAAAETVSAIDVEAGSAILIEESSGKILYEKNADESLAI 82
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 83 ASMTKMMSEYLVHEAMDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 142
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+NA G+
Sbjct: 143 AMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMKHYKFVNATGLTNQDLKGYHPE 202
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N NW
Sbjct: 203 GTTLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQEGGKYPIDMANFNWMLKGL 262
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 263 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDETKKLYDYGFAN 322
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+K + V + V + + +
Sbjct: 323 FEVKKVYGKDAVVKGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVPNTEQ 382
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 383 EAPIKKGVTISKMII 397
>gi|229083326|ref|ZP_04215686.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-44]
gi|228699973|gb|EEL52598.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-44]
Length = 449
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 70/375 (18%), Positives = 141/375 (37%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L + A L++ ++G ++ + D
Sbjct: 17 KRFIAMVTVLTLFCSMFVTYSSASAETGPALDVAAGAAILVEADSGKILYQKNADELLAI 76
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + +S+ A + S + T+ +
Sbjct: 77 ASMTKMMSEYLVHKAVDQGKLKWDQKVKVSEYAYKVSQDRSLSNVPLENGGSYTVKELYE 136
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+AE++ E FV+ MN+ +K GL F+N+ G+
Sbjct: 137 AMAIYSANGATIALAEAVAGKEADFVKMMNDQAKEFGLKNYKFVNSTGLTNTDLKGLHPE 196
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD+AIL+ R+ DFP + +I + + N NW
Sbjct: 197 GTTPDEENKMSARDVAILAQRLMQDFPNVLDTAKIPKKVFQKDGKYPIQMDNWNWMLKGL 256
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
V + G DG+KTG T +G+ +A + LI+V++ +R + + GF N
Sbjct: 257 VKQYEGVDGLKTGHTPEAGYCFTGTAEKNGMRLISVVINTSSNTSRFDETKKIFDYGFAN 316
Query: 267 KTDRKKINYIIKD-------FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+K + + + + + + + +
Sbjct: 317 FDVKKVYSKGSAVKGHETVRVENAKDKDVTVQTKQAITLPMPKGSKDVYKTEFKDTSKEK 376
Query: 320 FIDFEKITLLKNKIT 334
+K T L +
Sbjct: 377 EAPIKKGTTLGQMVI 391
>gi|158320769|ref|YP_001513276.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
OhILAs]
gi|158140968|gb|ABW19280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
OhILAs]
Length = 442
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 89/359 (24%), Positives = 139/359 (38%), Gaps = 35/359 (9%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F +I++ + S +F PY L+D TG V+ PAS TK+MTA
Sbjct: 12 IFTLILSFSFESMVFAQ-GQQPDISAPYGVLIDYETGTVLYNKNAHEKAYPASTTKVMTA 70
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+V L +TI S+ KG + T+ L+ L+++SAND A A
Sbjct: 71 VMVLENA-----NLDDKVTI-DYDLYVDGSSMYLLKGESFTVRELLQALLIRSANDAAEA 124
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A + + FV+ MN +K LG T+F N HG+ H TTA D+A++S T
Sbjct: 125 LAIHIAGSVDSFVEKMNARAKELGAFNTNFTNPHGLPDTNHVTTAYDLAMISKHAMTFDL 184
Query: 183 QYMHYFQI------KGLEIKGKKYPNTNWAVG-----------------TFLGADGMKTG 219
+ + Y NTN + + DG+KTG
Sbjct: 185 FRETVKTEMLILEPTEQTPETRYYRNTNKFLWGTGSANHMLYNGSYINIKYDIIDGLKTG 244
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK- 278
+T A+G +++S+ Q D LI+V+LGA N S L+ G+ N N+ +
Sbjct: 245 YTGAAGNCLISSSFQNDHRLISVVLGAEG-NHVYSDSRRLIDYGYENFKLISLTNHNLDS 303
Query: 279 ---DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+I + T Y + E+ ++ L I
Sbjct: 304 IHIPIRNGAQDFVALSILNDKLTVVPLGTEYTNIKESLYLNENIQAPVKQGDTLGKLIY 362
>gi|188586281|ref|YP_001917826.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350968|gb|ACB85238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 395
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 81/343 (23%), Positives = 152/343 (44%), Gaps = 18/343 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAET-NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
++ +A++++ + E + P Y L + +G ++ E PAS+TK+MT
Sbjct: 9 LVLFLAISLVFQGSTAKTSPEDELEAPVYLLGEPKSGEILLEQDKQEQVYPASITKIMTL 68
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ L+ ++ L + + + A + P + ++G +T+D+ + + V SAND ++A
Sbjct: 69 LLTMEALENEQIALEEEVIVPREAEDIPGTTIFLQQGEKITVDDLITAIAVGSANDASIA 128
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--------- 173
IA+ + T FV MN+ ++ LG+ T+F N HG+ H TTA D+ I+
Sbjct: 129 IAKHISGTVDNFVDEMNDKARELGMKNTNFENPHGLHHDEHVTTAEDIFIMASELGKYEE 188
Query: 174 --SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
W ++ ++ + +G NTN V + G DG KTGFT S +I A+
Sbjct: 189 IHDWLEIWLIEDFLQGKKVVEDDEEGIFLSNTNRLVNQYPGCDGFKTGFTEESKHSITAT 248
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSN 287
A Q + IA+I+ D + R + + +LL GF N + + +
Sbjct: 249 AKQNGERYIAIIMSHEDSDGRFEEAMNLLDYGFANYQTNTILEKGDLVARVKINKGDQEY 308
Query: 288 EVPNISEEVCTTQKEIINYNTQM--KEAKDKESHFIDFEKITL 328
+ EE+ +E + + D ++ +K+
Sbjct: 309 LPLLVKEELVAVTEESDEIEIEEEHQIPDDLSPPIVEGDKVGE 351
>gi|157691298|ref|YP_001485760.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
SAFR-032]
gi|157680056|gb|ABV61200.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
SAFR-032]
Length = 441
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 85/377 (22%), Positives = 149/377 (39%), Gaps = 43/377 (11%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++Q +V I+A+A++ F +S L++ +TG ++ +
Sbjct: 6 LKQLMVSILALALIVTAFTPMSKAKAAEDPFNVNAKAAILIEASTGKILYSKNAEQRLPI 65
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS+ K+MT Y++ + E K + + + + SN +K + T+ +
Sbjct: 66 ASMAKMMTEYLLLEAIAEGKVKWDQTYTPDDYVYEISQDRSLSNVPLRKDGSYTVKELYQ 125
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ SAN A+ +AE + +E KFV+ MN +K LGL+ F+NA G+
Sbjct: 126 ATAIYSANAAAIGLAEVIAGSESKFVEKMNAKAKELGLTNYKFVNATGLENKDLHGKQPK 185
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA---- 206
+A+DMA+L+ + D P+ + I + + PN N+
Sbjct: 186 GTGTDEESEVSAKDMALLAQHLIKDHPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGL 245
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGF 264
V + G DG+KTG T ++G + +A QGD +IAVIL A R V+ L F
Sbjct: 246 VKEYEGVDGLKTGSTDSAGSSFTGTAKQGDMRVIAVILNAKGNLHTARFDVAKKLFDYAF 305
Query: 265 YNKTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
N T ++ + + E K + + K +K
Sbjct: 306 KNFTMKEMYKKGQQIKGHENIEVDKGKDKEVPVVTKEAFSVPVKNGDEKSFKAKVNIEKT 365
Query: 318 SHFIDFEKITLLKNKIT 334
+K T + T
Sbjct: 366 KLEAPIKKGTKVGMLTT 382
>gi|148553407|ref|YP_001260989.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii
RW1]
gi|148498597|gb|ABQ66851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingomonas wittichii
RW1]
Length = 392
Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats.
Identities = 79/351 (22%), Positives = 141/351 (40%), Gaps = 19/351 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ L+ M + + P L D ++G ++ PD PAS+ K+MT
Sbjct: 5 KIALLSAVFLMAAIPAEAAAPPFDTPAPVAFLKDLSSGAILYAKNPDLRMPPASMAKMMT 64
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYP-----PSNSTFKKGSTMTLDNALKLLIVKSA 116
YV F +++ + L T+ + S G +++ N L ++ S
Sbjct: 65 VYVAFDLIQKGELKLDAMATVRPETWKQWHGPAAGSTMFLSPGEQVSVANLLFGIVTLSG 124
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMAILSW 175
ND V +AE + TE+ FV MN +K +GL+ +HF ++G G Y TARD+A L+
Sbjct: 125 NDACVVLAEHISGTEQAFVALMNRRAKEMGLTNSHFGTSNGWPDGGATYVTARDLATLAE 184
Query: 176 RIKTDFPQYMH-YFQIKGLEIK-------GKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ + P+ ++ N + +G GADG+KTG T +GF
Sbjct: 185 KTIEEHPKLYKTFYSRPSFTWGKTMGGGQDITQANRDPLLGRVAGADGLKTGHTEEAGFG 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQ 283
SA Q + L+ V+ G N R S S ++ GF + + + K +
Sbjct: 245 FTGSAEQNGRRLVMVLSGLTSFNQRIDQSVSFMNWGFRSWQSKPVVPKGRKVQTAEVQLG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ +++ T + + + K + F+K + + +
Sbjct: 305 DEREVGLVAPKDLVVTVPAGLGSDLKTKVV-YQGPIKAPFKKGDHIADLVV 354
>gi|190893669|ref|YP_001980211.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652]
gi|190698948|gb|ACE93033.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT
652]
Length = 366
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 122/319 (38%), Positives = 183/319 (57%), Gaps = 11/319 (3%)
Query: 1 MR--QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
MR +F V A L+++ + + L+D TG V+ W PASLTK
Sbjct: 1 MRPLRFSVAATAAFLASVSLAQANP-------HILVDVQTGRVLEHEEAFRKWYPASLTK 53
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMT Y VF ++ + L TPI +SK A+ P + FK G +TLD+ALK+L+VKSAND
Sbjct: 54 LMTVYTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSAND 113
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
IAVA+AE++ T++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++
Sbjct: 114 IAVAVAEAVGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALR 173
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
DFPQY YF ++G + PN N +G F GADGMKTGF CASGFN + SA + ++
Sbjct: 174 RDFPQYAGYFSLEGFTNGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRT 233
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
L++V+LG R +A+LL GF + +K + Q +V +I+ ++C+
Sbjct: 234 LVSVVLGTDSLAARADATANLLQKGFTTQFPGNDTLGSLKPYGQGQD--QVTDITADICS 291
Query: 299 TQKEIINYNTQMKEAKDKE 317
+ I T+ + + K
Sbjct: 292 AKGAKIRSETRDEVGRMKV 310
>gi|42779091|ref|NP_976338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
gi|42735006|gb|AAS38946.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
Length = 438
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 7 KRFIALVTMFTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 307 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQE 366
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 367 APIKKGAALGQMVI 380
>gi|15966442|ref|NP_386795.1| putative penicillin-binding protein [Sinorhizobium meliloti 1021]
gi|307300521|ref|ZP_07580301.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
BL225C]
gi|307318386|ref|ZP_07597821.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
AK83]
gi|15075713|emb|CAC47268.1| Putative penicillin-binding protein [Sinorhizobium meliloti 1021]
gi|306896068|gb|EFN26819.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
AK83]
gi|306904687|gb|EFN35271.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
BL225C]
Length = 360
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 118/305 (38%), Positives = 180/305 (59%), Gaps = 2/305 (0%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ FL+ A ++D +T V W PASLTKLMTAY F ++
Sbjct: 2 LAGACAVFLAAALPASANPRLVIDVDTLKVYEHQDIFQRWYPASLTKLMTAYTTFRAIQA 61
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ L +P+ ++KNA+ PPS +K G MTLD+ALK++++KSAND+AVAIAE++ +E
Sbjct: 62 GQLTLQSPVVMTKNAASEPPSKMFYKPGQKMTLDSALKMMLIKSANDVAVAIAETVGGSE 121
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ F++ MN ++ +G++++HF+N +G+ G YTTARD+A+L+ +K +FPQY YF ++
Sbjct: 122 QAFIEKMNAEARRIGMTSSHFINPNGLPGQGQYTTARDLAVLAVTLKREFPQYASYFALE 181
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
G K YPN N +G F GADGMKTGF CASGFN V+SA +G + +++V+LG
Sbjct: 182 GFTTGKKDYPNYNMLIGRFDGADGMKTGFICASGFNQVSSASRGGRRVVSVVLGEDSLAA 241
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
R SA LL M F + K I + + V +IS+E+C+ Q + + +
Sbjct: 242 RADESARLLQMAFTTVSTGKPSLAEIVPYGE--TRGVVADISKEICSKQAAKVRSEGRDE 299
Query: 312 EAKDK 316
+ K
Sbjct: 300 AGRQK 304
>gi|255066778|ref|ZP_05318633.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria sicca ATCC
29256]
gi|255048853|gb|EET44317.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria sicca ATCC
29256]
Length = 417
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 84/307 (27%), Positives = 138/307 (44%), Gaps = 6/307 (1%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
Y + D ++ V+A N D PASLTK+MTAY+ F L+ +T+S +
Sbjct: 66 YIVTDLHSHQVLASNNIDTQIEPASLTKMMTAYLTFKALENGTLRADQMLTVSDAGWKIE 125
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSA 149
S ++ + +K +IV+S ND A +AE++ + FVQ MN +K LG++
Sbjct: 126 GSRMFLIPKVPASVSDLIKGMIVQSGNDAATTLAEAMGGGSVDVFVQQMNEEAKRLGMTK 185
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
THF N G+ GH +T D+AILS + D+P+Y F IK + + PN N +
Sbjct: 186 THFKNPTGLAAEGHVSTVGDLAILSAALIHDYPKYYPVFSIKSFKYNNVEQPNRNLLLYR 245
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
DG+KTG T ++G+N+ AS+ + + ++++++G R S LL+
Sbjct: 246 DSNVDGLKTGHTESAGYNLAASSKRNGRRIVSIVVGTDSTEARASESGKLLNWALQAFDT 305
Query: 270 RKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
K N Y+ + + E+V T N + + + K
Sbjct: 306 PKLYNGGEIISKVKVYKGSSKSVNVGFLEDVYITIPHDAGQNIKP-ILETVQPVIAPIRK 364
Query: 326 ITLLKNK 332
L
Sbjct: 365 GQTLGKL 371
>gi|171704678|gb|ACB54658.1| D-ala-D-ala carboxypeptidase [Paenibacillus polymyxa]
Length = 417
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 148/349 (42%), Gaps = 37/349 (10%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ L L++ +TG V+ PD P PAS+TK+MT Y+V +K+ K T +T
Sbjct: 35 NPPSLALRSAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVT 94
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+++NAS+ S +G T++ + V SAND VA+AE + TE+ FV+ MN T
Sbjct: 95 VNENASKSIGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNET 154
Query: 142 SKNLGLSATHFMNAHGVV------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
++ +G+ T+F+N+ G+ TARD A L+ I D P Y +
Sbjct: 155 AQKMGMKNTYFINSTGLDRKDMPTGFQPDTDRETVMTARDAATLAGYIIKDHPDYTRFTT 214
Query: 190 IKGLEIKGK---KYPNTNWA-----------VGTFLGADGMKTGFTCASGFNIVASAIQG 235
I+ + + N NW + G DGMKTG T +G +A +
Sbjct: 215 IQSYKFRPTDKAPIINYNWMLEENKNITNFRKFAYPGLDGMKTGHTNNAGNCFTGTAERN 274
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
LI+V++GA R +A +L+ GF N ++ + +N+ E
Sbjct: 275 GMRLISVVMGADSDAHRFTETAKVLNYGFDNFEVKQVVAPKTVVKGVENVP-VTKGTETE 333
Query: 296 VCTTQKEIINYNTQMKEAKDKE----------SHFIDFEKITLLKNKIT 334
V K+ +++ + K S ++ +
Sbjct: 334 VPIVTKDAVSFIVPKGASNPKVTFTTNITPASSLVAPLKQGAKVGTITY 382
>gi|167647108|ref|YP_001684771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31]
gi|167349538|gb|ABZ72273.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caulobacter sp. K31]
Length = 435
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 93/314 (29%), Positives = 150/314 (47%), Gaps = 3/314 (0%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ + P+L + ++D N+G ++ + D P PAS+TK+MT Y+ F L
Sbjct: 29 TVAAAQIPYLQLNSAEPKYAAIVIDANSGEMLYDKRADSPRYPASVTKVMTLYLTFEALS 88
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
E + LT + + A+ P+ G ++++D A++ + VKSAND+AVA+AE L +
Sbjct: 89 EGRLKLTDRVPFTARAAAQAPTKLGLPPGDSISVDEAIRAMTVKSANDVAVAMAERLGGS 148
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
E +F M + LG+ + F+NA G+ +TARD+AILS DFPQY YF I
Sbjct: 149 ESRFAALMTLRGQELGMRNSRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSI 208
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
KG E +G+ N + G DG+KTG+T ASG+N+ SA++ + LIAV+LG
Sbjct: 209 KGFEFRGRYIAGHNRLLTNMPGFDGLKTGYTNASGYNLAGSAVRDGRRLIAVVLGGSSTA 268
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
R+ LL+ GF R P + + + + ++
Sbjct: 269 WRDNNMEDLLTTGFDVLKRRSHGERTTIAANLYEDEPTGPIMRP--SSEEGDGDQAGLKI 326
Query: 311 KEAKDKESHFIDFE 324
+ +
Sbjct: 327 VLTDN-PKPPAPLK 339
>gi|170757721|ref|YP_001781407.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B1 str.
Okra]
gi|169122933|gb|ACA46769.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B1
str. Okra]
Length = 407
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 93/378 (24%), Positives = 155/378 (41%), Gaps = 44/378 (11%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIA-----------------------ETNKLPYYT 32
M++ F VII + + +F A
Sbjct: 1 MKRKIYYFFSVIITITFIFGVFVTPVSAYDQQNQLKKEEKAEDKDSNKEGDSDVDAKSAL 60
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S
Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
G T+++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F
Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
N G+ GH T+A D++I+S + + I N N V
Sbjct: 181 KNCTGLSAEGHKTSAYDISIMSRELLKHKQILKYTGTYMETISEGRKSPIGLVNHNKLVR 240
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF
Sbjct: 241 FFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKFE 300
Query: 269 DRKKINYII----KDFYQQNLSNEVPNI--SEEVCTTQKEIINYNTQMKEAKDKESHFID 322
+ + + + +V + + + ++K+ + I
Sbjct: 301 CKTLVKKGDVISKVPLNSKGDKYFMAKSCEELDVIIEKGKKTKITNKCIIDENKKEYKI- 359
Query: 323 FEKITL-----LKNKITK 335
E++ + N I K
Sbjct: 360 NEEVGICEFYSDGNLIGK 377
>gi|295116100|emb|CBL36947.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SM4/1]
Length = 404
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 85/337 (25%), Positives = 143/337 (42%), Gaps = 14/337 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+S + P L++ +TG V+ E D NPAS+TK+MT + F LK
Sbjct: 33 VSAPASAALEGPQIQAPCGILMEASTGTVLYEKNADEARNPASVTKIMTLLLTFDALKSG 92
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
K LT + S +A S ++G T++ +K +++ S ND +VA+AE + E
Sbjct: 93 KIALTDEVVTSAHAKSMGGSQVFLEEGEVQTVETLIKCIVIASGNDASVAMAEYIAGDEA 152
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
FVQ MN +K LG+ +F + G+ H +ARD+A+++ + T +P+ +Y I
Sbjct: 153 SFVQMMNERAKGLGMEQANFEDCCGLTDSASHAMSARDIALMTRELITKYPEIFNYSTIW 212
Query: 192 GLEIKGKK--------YPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
I NTN + T G+KTG T + + + A+A + LIA
Sbjct: 213 MENITHVTKQGTKKFGLSNTNKLLKMATNFEVTGLKTGSTSTAKYCLSATARKDGVELIA 272
Query: 242 VILGALDRNTRNKVSASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
VIL A D R + +LL+ G+ N TD I +
Sbjct: 273 VILAAPDYKARFNDAVTLLNYGYANCRLYTDEDVGEIPEVQILGGVQDTVPVRIDKPFSY 332
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ KE + ++ ++ + +
Sbjct: 333 LGTSGEDFSGIEKEWIFETELKAPVQEGEIVGKLVYR 369
>gi|228963111|ref|ZP_04124282.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228796567|gb|EEM44004.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar sotto str. T04001]
Length = 443
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 74/374 (19%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTVITLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 312 EVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQE 371
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 372 APIKKGAALGQMVI 385
>gi|147678211|ref|YP_001212426.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
thermopropionicum SI]
gi|146274308|dbj|BAF60057.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
thermopropionicum SI]
Length = 407
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 79/329 (24%), Positives = 133/329 (40%), Gaps = 19/329 (5%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
S S ++D G V+ E PD PAS TK+MTA + +
Sbjct: 18 ASASPLQASSGPEIVGEAAVVIDIKNGQVLFEKNPDRRVYPASTTKIMTAVIALENGR-- 75
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + A S+ ++G ++L++ L L++ S ND AVAIA + + +
Sbjct: 76 ---LDAAVAVPGEACNIEGSSIGLQEGEKISLEDLLYALMLNSGNDTAVAIACHVGGSVE 132
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
FV MN + LG THF N +G+ GHY+TA DMA++S P++ +
Sbjct: 133 AFVSMMNKKAAELGAVNTHFNNPNGLPDPGHYSTAYDMALISRY-AMQNPEFRKIVSTRV 191
Query: 193 LEIK------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
I+ N N + + GA G+KTG+T +G +V+SA + + L+AV++ +
Sbjct: 192 KTIRRSVPDAQVYLENHNRLLWLYEGATGVKTGYTVEAGQCLVSSAARQGRELLAVVMKS 251
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYI------IKDFYQQNLSNEVPNISEEVCTTQ 300
N S SL+ F + F + S
Sbjct: 252 EGSNI-WSDSTSLMDYCFKEFRPVCLVEAGAFVADVPVKFGEPAAVAVQTGSSFTYNFPA 310
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + ++ K+ + EK+ +
Sbjct: 311 DKPLEIKKEVLLEKEFCAPVRAGEKLGEM 339
>gi|86359415|ref|YP_471307.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
gi|86283517|gb|ABC92580.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
Length = 360
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 117/306 (38%), Positives = 178/306 (58%), Gaps = 2/306 (0%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
M++ F++ + + L++ TG V+ W PASLTKLMT Y VF ++
Sbjct: 1 MIAATAAFVASVSLVQANPHILVEVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIRA 60
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ L TPI ISK A+ P + FK G +TLD+ALK+L+VKSANDIAVA+AE++ T+
Sbjct: 61 GQISLDTPIVISKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAVGGTQ 120
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++
Sbjct: 121 EGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFALE 180
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
G + PN N +G F GADGMKTGF CASGFN + SA + ++L++V+LG
Sbjct: 181 GFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAA 240
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
R +A+LL GF + +K + +V +I+ ++C+ + I T+ +
Sbjct: 241 RADATANLLQKGFTTQFPGSDTLGSLKPYGPGQD--QVTDITADICSAKGAKIRSETRDE 298
Query: 312 EAKDKE 317
+ K
Sbjct: 299 VGRMKV 304
>gi|229009524|ref|ZP_04166753.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus mycoides DSM 2048]
gi|228751735|gb|EEM01532.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus mycoides DSM 2048]
Length = 418
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 73/355 (20%), Positives = 135/355 (38%), Gaps = 34/355 (9%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN A + L++ N+G ++ + D + AS+TK+M+ Y+V + + K
Sbjct: 6 SNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAIAKGK 65
Query: 74 AMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ +S+ A S + T+ + + + SAN +A+AE++
Sbjct: 66 LKWDQKVKVSEYAYNISQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAG 125
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMAILSW 175
E FV+ MN+ SK LGL F+N+ G+ + +ARD+AIL+
Sbjct: 126 KEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQ 185
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA----VGTFLGADGMKTGFTCASGF 226
R+ DFP+ + +I + PN NW + + G DG+KTG T +G
Sbjct: 186 RLIQDFPKTLDIAKISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAGD 245
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ + I+V++ R + L GF N +K ++ +
Sbjct: 246 CFTGTIERNGMRFISVVIKTKSHTARFDETKKLYDYGFANFEMKKMYEKGSSVKGKETVR 305
Query: 287 NEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
E + V + + + + + +K L +
Sbjct: 306 VENAKDKDVAVQTKQAVSLPVPKGSKDVYKTEFKEGNKGQEAPMKKGVTLGQMVV 360
>gi|218895150|ref|YP_002443561.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
G9842]
gi|218543092|gb|ACK95486.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
G9842]
Length = 438
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 74/374 (19%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L SN A + L++ N+G ++ + D +
Sbjct: 7 KRFIALVTVITLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 307 EVKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQE 366
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 367 APIKKGAALGQMVI 380
>gi|90418359|ref|ZP_01226271.1| putative penicillin-binding protein, D-Ala-D-Ala carboxypeptidase
family [Aurantimonas manganoxydans SI85-9A1]
gi|90338031|gb|EAS51682.1| putative penicillin-binding protein, D-Ala-D-Ala carboxypeptidase
family [Aurantimonas manganoxydans SI85-9A1]
Length = 393
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 77/314 (24%), Positives = 134/314 (42%), Gaps = 10/314 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P L+D TG V+ E D PASL KLMT V+F LK+ + +S+
Sbjct: 35 ETTAPTAILVDYGTGRVLYEKDADTEIPPASLAKLMTIAVLFDDLKQGRVQRDDRFVVSE 94
Query: 85 NASEYPPSN-----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+A ++ S + +++ ++ +IV+S ND + +AE L + + F MN
Sbjct: 95 HAWRTGGASSGGSTMFLPLNSEVAVEDLIRGIIVQSGNDATIVVAEGLSGSVEAFAGRMN 154
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ +GL+ +HF N HG+ + + RD+A L+ + +FP+ F + G K
Sbjct: 155 AEAEKIGLTHSHFTNPHGLPDPEQHVSVRDLARLATYLIREFPEDYPIFAEESFTYNGIK 214
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N LGADG+KTG T A+G+ +VASA + + ++ + G R + L
Sbjct: 215 QQNRNPL--LDLGADGLKTGHTSAAGYGLVASAERDGRRIVLAMSGMGSTAERASEARRL 272
Query: 260 LSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
++ G + + + + +S V + E + +E +
Sbjct: 273 MNFGLQDFEEVVLVTAGETLGNVQVRGGVSETVGMAAAEDLRMLVPRGSLADVEREVVEN 332
Query: 317 ESHFIDFEKITLLK 330
K L
Sbjct: 333 GPFVAPVAKGQRLG 346
>gi|209548202|ref|YP_002280119.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209533958|gb|ACI53893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 427
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 95/323 (29%), Positives = 154/323 (47%), Gaps = 8/323 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR L + L+ P ++A +LD TG V+A D +PASLTK+M
Sbjct: 1 MRTLLAAVLTVTLAVSAPLAALA----GSASLVLDARTGKVLAAENADTLNHPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +I+KSAND A
Sbjct: 57 TLYLTFEALKRGKIAWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIIKSANDAA 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+ E L +E F + M ++ LG+S T F+NA G+ TTARDM+ L+ + +
Sbjct: 117 SAMGEKLGGSESGFARMMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKN 176
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+P F + +G+ N + + G DG+KTG+T ASGFN+V++ G++ ++
Sbjct: 177 YPNEYRLFSVASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 236
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD----RKKINYIIKDFYQQNLSNEVPNISEEV 296
V+LG +R+ A LL + R + ++ + + + ++ +
Sbjct: 237 GVVLGGRTARSRDDKMAGLLDRYLGRASSSGGARLVASVGAREPVEVASAADDSDVPVPL 296
Query: 297 CTTQKEIINYNTQMKEAKDKESH 319
+ + A D
Sbjct: 297 SAPRPADDLAAKSLAYADDAVVP 319
>gi|254436605|ref|ZP_05050099.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter
antarcticus 307]
gi|198252051|gb|EDY76365.1| D-alanyl-D-alanine carboxypeptidase family [Octadecabacter
antarcticus 307]
Length = 399
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 77/330 (23%), Positives = 143/330 (43%), Gaps = 13/330 (3%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL-----KEK 72
P + + +LD +TG V+ E D P PAS++KLMT Y+ F + ++
Sbjct: 21 PVSAQTFDTRAGAAYVLDHSTGIVLLEKNADDPLPPASMSKLMTLYMAFEAVNPLNGQDP 80
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT-- 130
+ +S++ +Y S + +++ ++ +IV S ND + IAE+L +
Sbjct: 81 ILTFDDVLPVSQHCMDYTGSTMFLDTTDRVRVEDLVRGIIVLSGNDASCVIAEALSRDGT 140
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
E F Q M ++ +G+ + F N++G G+ T RD+ L+ R+ TD+P Y F
Sbjct: 141 EAGFAQQMTERAQQIGMMNSSFANSNGWPAAGNRVTMRDLGTLADRLITDYPTYYPLFAE 200
Query: 191 KGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ + G+ N N + +GADG+KTG T +GF +V SA QGD+ +I V+ G
Sbjct: 201 REFDYDGEHLANIRNRNPLLALNIGADGLKTGHTREAGFGLVGSAKQGDRRIIFVVTGIE 260
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R + +++ F T R + + E P + + ++ +
Sbjct: 261 TAQERAAETERIVNWAFRQFTQRDIARGGTQIAQAEVWRGEQPVVGLLLQEDLSLLVPTS 320
Query: 308 TQMKEAKDKE---SHFIDFEKITLLKNKIT 334
+ + + + + +
Sbjct: 321 GSREISAEVVYTGPIQAPIVQGDAIAELVI 350
>gi|228956454|ref|ZP_04118252.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|229039918|ref|ZP_04189684.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH676]
gi|229107699|ref|ZP_04237337.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock1-15]
gi|229125530|ref|ZP_04254564.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-Cer4]
gi|229142819|ref|ZP_04271263.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-ST24]
gi|229148422|ref|ZP_04276680.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus m1550]
gi|296500847|ref|YP_003662547.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
gi|228635031|gb|EEK91602.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus m1550]
gi|228640633|gb|EEK97019.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-ST24]
gi|228657914|gb|EEL13718.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-Cer4]
gi|228675739|gb|EEL30945.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock1-15]
gi|228727408|gb|EEL78599.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH676]
gi|228803211|gb|EEM50031.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar pakistani str. T13001]
gi|296321899|gb|ADH04827.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
Length = 415
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 72/354 (20%), Positives = 138/354 (38%), Gaps = 33/354 (9%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN A + L++ N+G ++ + D + AS+TK+M+ Y+V + + K
Sbjct: 4 SNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGK 63
Query: 74 AMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
I +S+ A + N + G + T+ + + + SAN +A+AE++
Sbjct: 64 LKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAG 123
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSW 175
E FV+ MN+ SK LGL F+N+ G+ + +A+D+A L+
Sbjct: 124 KEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQ 183
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFN 227
+ D+P+ + +I E + +K N NW V + G DG+KTG T +G
Sbjct: 184 HLIKDYPKVLDTAKIPKKEFRPEKEKFGMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDC 243
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + I+V++ R + L GF N ++ Q+ +
Sbjct: 244 FTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEVKQMYKKGSSVKGQETVRV 303
Query: 288 EVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
E + + + + + + + +K L +
Sbjct: 304 ENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQEAPIKKGAALGQMVI 357
>gi|239625716|ref|ZP_04668747.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519946|gb|EEQ59812.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 392
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 87/332 (26%), Positives = 140/332 (42%), Gaps = 14/332 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
A P L++ +TG VI E D +PAS+TK+MT ++F L+ K
Sbjct: 21 APSADTQAAVQIAAPSAVLMEASTGQVIYEKGADEKRSPASVTKVMTLILIFDALQSGKI 80
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
LT + S +A S ++G T++ +K +++ S ND +VA+AE + TE++F
Sbjct: 81 NLTDEVVTSAHAKSMGGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYIGGTEEEF 140
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
V+ MN + LG++ THF++ G+ H TTARD+AI+S + +PQ +Y I
Sbjct: 141 VRMMNERAAGLGMTNTHFVDCCGLTESPEHLTTARDIAIMSRELINKYPQIHNYSTIWME 200
Query: 194 EIKGKK--------YPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
I NTN + T G+KTG T + + + A+A + LIA I
Sbjct: 201 NITHVTKQGTKEFGLSNTNKLLKMATNFKVTGLKTGSTSIAKYCLSATAEKDGVRLIATI 260
Query: 244 LGALDRNTRNKVSASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
+ A D R + +LL+ G+ N D++ +
Sbjct: 261 MAAPDFKARFGDAQTLLNYGYANCKLYEDKEHVPLPQMPVTGGVEDEVGLAYEGVFSYLS 320
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + K ES E
Sbjct: 321 LKGEDLGAIEKNLVLAESMPAPVEPGQKAGVL 352
>gi|260587845|ref|ZP_05853758.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
20583]
gi|331083847|ref|ZP_08332956.1| hypothetical protein HMPREF0992_01880 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542110|gb|EEX22679.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
20583]
gi|330403272|gb|EGG82832.1| hypothetical protein HMPREF0992_01880 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 393
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 87/345 (25%), Positives = 156/345 (45%), Gaps = 15/345 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ +V I + + P AE P+ L++ +TG +I E D PAS+TK+
Sbjct: 8 KIVVGILLFCSLFLTPLTVKAENEELITAPHGVLMEASTGKIIYEKDMDTRVKPASITKI 67
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT ++F L++ + + S A S ++G T++ +K +++ S ND
Sbjct: 68 MTLILIFDELEKGNLHMEDEVVTSAYAKSMGGSQVFLEEGEKQTVETLIKCIVIASGNDA 127
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIK 178
+ A+AE + +E +FV+ MN +K LG+ T+F + G+ HYT+A D+AI+S +
Sbjct: 128 SAAMAEHIAGSETEFVKRMNERAKGLGMENTNFEDCCGLTESDNHYTSAHDVAIMSRELI 187
Query: 179 TDFPQYMHYFQIKGLEIKGKKY--------PNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
T +P+ + Y + I NTN + ++ G G+KTG T + + + A
Sbjct: 188 TRYPKILEYSSVWMENITHVTQKGNSEFGLTNTNKLIRSYDGCVGLKTGSTSVAKYCVSA 247
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF---YNKTDRKKINYIIKDFYQQNLSN 287
A + +LI+V++ A D R K +A++L++GF D +K L
Sbjct: 248 VAQREGITLISVVMTAPDYKVRFKDAAAMLNLGFGSCKLYVDEQKEKLPQIPVEGGVLEK 307
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E E ++ K+ K K+ +K +
Sbjct: 308 VPCAYEKEFRYLDTEGASFENIEKKIKLKKDLKAPVKKGDTVGTV 352
>gi|168184531|ref|ZP_02619195.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
gi|237795263|ref|YP_002862815.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Ba4
str. 657]
gi|182672360|gb|EDT84321.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
gi|229263748|gb|ACQ54781.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Ba4
str. 657]
Length = 407
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 87/325 (26%), Positives = 139/325 (42%), Gaps = 14/325 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ TG VI E P + PAS+TK+MT + + K LT +TIS+
Sbjct: 53 DVDAKSALLIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISE 112
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NA + S G T++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++
Sbjct: 113 NAKKMGGSTMLLDVGEERTVEELLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQK 172
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD----FPQYMHYFQIKGLEIKGKKY 200
L + T F N G+ GH T+A D+AI+S + + I
Sbjct: 173 LNMKDTSFKNCTGLSAEGHKTSAYDIAIMSRELLKHKQILKYTGTYMETISEGRKSPIGL 232
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N V F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L+
Sbjct: 233 VNHNKLVRFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLM 292
Query: 261 SMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK----- 311
+ GF + + + + EE+ ++ K
Sbjct: 293 NYGFSKFECKTLVKKGDVISKVPLNSKGDKYFMAKSCEELDAIIEKGKKAKITNKCIIDE 352
Query: 312 -EAKDKESHFIDFEKITLLKNKITK 335
+ + K + + + N I K
Sbjct: 353 NKKEYKINEEVGICEFYSDGNLIGK 377
>gi|229136857|ref|ZP_04265486.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-ST26]
gi|228646592|gb|EEL02797.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-ST26]
Length = 443
Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 312 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQE 371
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 372 APIKKGAALGQMVI 385
>gi|229119057|ref|ZP_04248397.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock1-3]
gi|228664386|gb|EEL19887.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock1-3]
Length = 453
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 74/375 (19%), Positives = 136/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ + D
Sbjct: 23 KRFIAIVTVLALFCSIVVTSGRASAETVPAIDVEAGSAILIEANSGKILYQKNADESLAI 82
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 83 ASMTKMMSEYLVHEAVAKGKIKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 142
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 143 AMAIYSANGATIALVEEIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHPE 202
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFPQ ++ +I + N NW
Sbjct: 203 GTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 262
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 263 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 322
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ + V + V + N + + +
Sbjct: 323 FEVKNVYGKDAVVKGHETVRVANAKDKDVVVQTKQAVALPMPKGNNDVYKKEFKVSNKEQ 382
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 383 EAPIKKGVTISKMII 397
>gi|206978355|ref|ZP_03239229.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
H3081.97]
gi|217957590|ref|YP_002336132.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
AH187]
gi|206743447|gb|EDZ54880.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
H3081.97]
gi|217065585|gb|ACJ79835.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus cereus
AH187]
gi|324324003|gb|ADY19263.1| serine-type D-Ala-D-Ala carboxypeptidase DacA [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 438
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 7 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 127 AMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPE 186
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 187 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 246
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 247 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 306
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 307 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQE 366
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 367 APIKKGAALGQMVI 380
>gi|42781590|ref|NP_978837.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
gi|42737513|gb|AAS41445.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10987]
Length = 434
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 70/375 (18%), Positives = 134/375 (35%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+VI+ + L + + L++ N+G ++ E D
Sbjct: 4 KKFIVIVTVLTLFCSIVVTSGSASAETVPVLDVEAGSAILVEANSGKILYEKNADESLAI 63
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V +++ K + IS+ A S + T+ +
Sbjct: 64 ASMTKMMSEYLVHEAVEKGKLKWDQKVKISEYAYTISQDRSLSNVPLENSGSYTVKELYE 123
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 124 AMAIYSANGATIALVEEIAGKEADFVKMMNDKSKEFGMKNYKFVNSTGLTNYDLKGHHPE 183
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N N
Sbjct: 184 GTTPDEKNKMSARDCAILAQRLVQDFPKMLDTAKIPKKTFQKGGKYPIDMVNFNMMLKGL 243
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 244 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDETKKLYDYGFAN 303
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ + + + + + + + E
Sbjct: 304 FEVKNIYGKGSVVKGHETVRVANAKDKDVIVQTKQAISLPMPKGNKDVYKKEFKVSNEEQ 363
Query: 320 FIDFEKITLLKNKIT 334
+K + +
Sbjct: 364 EAPIKKGVTISKMVI 378
>gi|317122120|ref|YP_004102123.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
marianensis DSM 12885]
gi|315592100|gb|ADU51396.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
marianensis DSM 12885]
Length = 578
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 81/327 (24%), Positives = 128/327 (39%), Gaps = 15/327 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P L+D TG V+ E D AS TK+MTA + + L
Sbjct: 174 PVPDRPPPQDARAAILVDAATGQVLYERNADATMPMASTTKIMTALLAIE-----RGDLR 228
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
IT S+ A S+ G TL+ L L+++S ND AVAIAE L + + FV
Sbjct: 229 QVITTSERAFGVEGSSLYLALGEQRTLEELLYGLMLQSGNDAAVAIAEGLAGSVETFVDW 288
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY-----MHYFQIKG 192
MN ++ LGL T F + HG+ HYT+ARD+A L+ + Y
Sbjct: 289 MNRRAQELGLEHTRFADPHGLASRDHYTSARDLATLARVAMANPTFRRIVGTREYRMPWP 348
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ + N N + + GA G+K G+T A+ +VASA + LI V+LGA
Sbjct: 349 EKQSERVLYNHNRFLWRYEGATGVKNGYTSAARGALVASAQRDGVELIGVLLGAH-PTGM 407
Query: 253 NKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
+ A+L+ GF + + + + V ++
Sbjct: 408 YRDMAALMDWGFARFAPVELVRAGETVGEVAVTGGRQDRVAVVAAYGLRWLVPRDEPAPP 467
Query: 310 MKEAKDKE-SHFIDFEKITLLKNKITK 335
++ + E + + + +
Sbjct: 468 VRRTVEPEGALPAPVARGARAGTLVIR 494
>gi|288957533|ref|YP_003447874.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
gi|288909841|dbj|BAI71330.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
Length = 474
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 84/233 (36%), Positives = 129/233 (55%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D TG V+ + D +PASLTK+MT Y+ F L++ + L + +S A P
Sbjct: 88 IVVDARTGQVLIDQDADAITHPASLTKMMTLYLTFDALEDGRLTLDQQLPVSSWAESMSP 147
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + G T+ ++ A+ L+ KSAND AV +AE+L TE +F + M ++ LG+ T
Sbjct: 148 TKLGLRAGQTLKVETAILGLVTKSANDAAVVLAEALGGTESRFAEMMTRKARELGMRHTV 207
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ NA G+ TTARD A LS + D +Y YF + G+ PN N + +
Sbjct: 208 YRNASGLPNMEQVTTARDYAALSRALMRDHAKYYPYFSRRNFVYGGRTLPNHNRLMSRYE 267
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
G DG+KTG+T ASGFN+ ASA++ + L+ V+LG +R+ A+LL F
Sbjct: 268 GMDGIKTGYTVASGFNLAASAVRDGRRLVGVVLGGKSAVSRDNKMAALLDQAF 320
>gi|168180436|ref|ZP_02615100.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC
2916]
gi|226949102|ref|YP_002804193.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A2
str. Kyoto]
gi|182668867|gb|EDT80845.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC
2916]
gi|226842614|gb|ACO85280.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A2
str. Kyoto]
Length = 407
Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats.
Identities = 94/377 (24%), Positives = 151/377 (40%), Gaps = 42/377 (11%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIA-----------------------ETNKLPYYT 32
M++ F VII + + +F A
Sbjct: 1 MKRKIYYFFSVIITITFIFGVFVTPVSAYDQQNQLKKEEKAEDKDSNKEGDSDVDAKSAL 60
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S
Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
G T++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F
Sbjct: 121 TMLLDVGEERTVEELLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
N G+ GH T+A D+AI+S + + I N N V
Sbjct: 181 KNCTGLSAEGHKTSAYDIAIMSRELLKHKQILKYTGTYMETISEGRKSPIGLVNHNKLVR 240
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF
Sbjct: 241 FFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKFE 300
Query: 269 DRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK------EAKDKES 318
+ + + + EE+ ++ K + + K +
Sbjct: 301 CKTLVKKGDVISKVPLNSKGDKYFMAKSCEELDAIIEKGKKAKITNKCIIDENKKEYKIN 360
Query: 319 HFIDFEKITLLKNKITK 335
+ + N I K
Sbjct: 361 EEVGICEFYSDGNLIGK 377
>gi|228937316|ref|ZP_04099964.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228950561|ref|ZP_04112697.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228970202|ref|ZP_04130863.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228976772|ref|ZP_04137186.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis Bt407]
gi|229067777|ref|ZP_04201096.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus F65185]
gi|229077286|ref|ZP_04209969.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock4-2]
gi|229188298|ref|ZP_04315349.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus ATCC 10876]
gi|228595166|gb|EEK52934.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus ATCC 10876]
gi|228706009|gb|EEL58314.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock4-2]
gi|228715330|gb|EEL67187.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus F65185]
gi|228782934|gb|EEM31098.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis Bt407]
gi|228789503|gb|EEM37421.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228809104|gb|EEM55587.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228822341|gb|EEM68321.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326937806|gb|AEA13702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 415
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 72/354 (20%), Positives = 138/354 (38%), Gaps = 33/354 (9%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN A + L++ N+G ++ + D + AS+TK+M+ Y+V + + K
Sbjct: 4 SNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGK 63
Query: 74 AMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
I +S+ A + N + G + T+ + + + SAN +A+AE++
Sbjct: 64 LKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAG 123
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSW 175
E FV+ MN+ SK LGL F+N+ G+ + +A+D+A L+
Sbjct: 124 KEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQ 183
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFN 227
+ D+P+ + +I E + +K N NW V + G DG+KTG T +G
Sbjct: 184 HLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDC 243
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + I+V++ R + L GF N ++ Q+ +
Sbjct: 244 FTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEVKQMYKKGSSVKGQETVRV 303
Query: 288 EVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
E + + + + + + + +K L +
Sbjct: 304 ENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQEAPIKKGAALGQMVI 357
>gi|228983269|ref|ZP_04143484.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229153793|ref|ZP_04281925.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus ATCC 4342]
gi|229194404|ref|ZP_04321209.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus m1293]
gi|228589060|gb|EEK47073.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus m1293]
gi|228629662|gb|EEK86357.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus ATCC 4342]
gi|228776449|gb|EEM24800.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 443
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 76/374 (20%), Positives = 146/374 (39%), Gaps = 41/374 (10%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ M L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTMLTLACSMLLPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALK 109
AS+TK+M+ Y+V + + K I +S+ A + N + G + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------- 159
+ + SAN +A+AE++ E FV+ MNN SK LGL F+N+ G+
Sbjct: 132 AMAIFSANGATIALAEAIAGKEVDFVKMMNNKSKELGLKNYKFVNSTGLTNKDLKGMHPE 191
Query: 160 ----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----V 207
+ +A+D+A L+ + D+P+ + +I E + +K N NW V
Sbjct: 192 GTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLV 251
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ G DG+KTG T +G + + I+V++ R + L GF N
Sbjct: 252 KEYDGVDGLKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANF 311
Query: 268 TDRKKINYIIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ Q+ + E + + + + + + +
Sbjct: 312 EMKQMYKKGSSVKGQETVRVENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQE 371
Query: 321 IDFEKITLLKNKIT 334
+K L +
Sbjct: 372 APIKKGAALGQMVI 385
>gi|283851675|ref|ZP_06368954.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
FW1012B]
gi|283573005|gb|EFC20986.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
FW1012B]
Length = 362
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 86/253 (33%), Positives = 136/253 (53%), Gaps = 1/253 (0%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ L + +TG ++ E PD PASLTK++T Y++F +++ K + +S
Sbjct: 93 PALTVKSAMLWNASTGELLYEQNPDFQIPPASLTKILTLYIIFDAIRQGKLRPWDVVDVS 152
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTS 142
+ A+ S + G ++ + + +K + V SAND +A+A+ L FV MN+T+
Sbjct: 153 ERAATQGGSTMRLRNGESVKVTDMIKGIAVASANDACMAMADYLEGGNVDAFVALMNDTA 212
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
K LG+S + FMN +G+ G TTARDM L+ FP+ + ++ ++ N
Sbjct: 213 KRLGMSNSVFMNPNGLPAEGQLTTARDMLRLASAYLEQFPKALSIHSLQFFSHNNRQRHN 272
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + ++ G DG+KTGF CASG+NIVA+A +GD LIAV+LG+ R + +A LL
Sbjct: 273 ANSLLASYEGCDGLKTGFVCASGYNIVATAKRGDTRLIAVVLGSRSPRVRQRETAKLLDK 332
Query: 263 GFYNKTDRKKINY 275
GF RK
Sbjct: 333 GFKLAAIRKATTP 345
>gi|229170684|ref|ZP_04298327.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH621]
gi|228612787|gb|EEK69969.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH621]
Length = 442
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 77/378 (20%), Positives = 144/378 (38%), Gaps = 43/378 (11%)
Query: 2 RQFLVI-----IAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I + +M+ + A + L++ N+G ++ + D
Sbjct: 12 KRFIAIGTVLTLFCSMVVTSGSASAETVPALDVEAGSAILVEANSGKILYQKNADELLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 132 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N NW
Sbjct: 192 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKASSHTARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+K + V + V + + + +
Sbjct: 312 FEVKKVYEKDSVVKGHETVRVANAKDKDVVVQAKQAVSLPMPKGNKDVYKKEFKVSNKEQ 371
Query: 320 FIDFEK-ITLLKNKITKK 336
+K +T+ K I+ K
Sbjct: 372 EAPIKKDVTISKMTISPK 389
>gi|229176613|ref|ZP_04304020.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus 172560W]
gi|228606860|gb|EEK64274.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus 172560W]
Length = 415
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 72/354 (20%), Positives = 138/354 (38%), Gaps = 33/354 (9%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN A + L++ N+G ++ + D + AS+TK+M+ Y+V + + K
Sbjct: 4 SNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEAVDKGK 63
Query: 74 AMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
I +S+ A + N + G + T+ + + + SAN +A+AE++
Sbjct: 64 LKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAG 123
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSW 175
E FV+ MN+ SK LGL F+N+ G+ + +A+D+A L+
Sbjct: 124 KEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQ 183
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFN 227
+ D+P+ + +I E + +K N NW V + G DG+KTG T +G
Sbjct: 184 HLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDC 243
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + I+V++ R + L GF N ++ Q+ +
Sbjct: 244 FTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEVKQMYKKGSSVKGQETVRV 303
Query: 288 EVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
E + + + + + + + +K L +
Sbjct: 304 ENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQEAPIKKGATLGQMVI 357
>gi|260575562|ref|ZP_05843560.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2]
gi|259022205|gb|EEW25503.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sp. SW2]
Length = 385
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 72/335 (21%), Positives = 138/335 (41%), Gaps = 9/335 (2%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
M L+ + + A + + D T V+ + D PAS++KLMT ++F
Sbjct: 5 LMLFLALLTALPAQAFDTQASNAWVYDLTTHTVLMDKNADVAVPPASMSKLMTINMLFEA 64
Query: 69 LKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
L++ + + T +S A S ++ T++ + +I+ S ND V +AE
Sbjct: 65 LRDGRVAMDTTFAVSTRAKGMTALGGSTMFLQETDRPTVEQLIHGMIINSGNDACVVVAE 124
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
L +E+ F + M+ ++ LG++ +HF NA G+ H + D+ +L+ R+ +FP+Y
Sbjct: 125 GLAGSEEAFAEQMSQRAQALGMTNSHFANASGMPDPSHRMSMHDLGLLATRLIEEFPEYY 184
Query: 186 HYFQIKGLEIKGKKYP---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
F + N N + +GADG+KTG T +G+ +V SA+QG++ ++
Sbjct: 185 PVFAETEYNYADRAVENRFNRNPLLKLNIGADGLKTGHTTEAGYGLVGSAVQGNRRIVFA 244
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTT 299
I G R + S +++ F + + + + V + T
Sbjct: 245 ITGLPSETARAEESERIVNWAFRQFALKTVAKSGVRVAEAEVWLGDAATVGLVPAADVTR 304
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + E K + +
Sbjct: 305 LLPALVQDQMSAEVVYTGPLQAPIAKGDEVAELVL 339
>gi|261364923|ref|ZP_05977806.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria mucosa ATCC
25996]
gi|288566708|gb|EFC88268.1| D-alanyl-D-alanine carboxypeptidase DacA [Neisseria mucosa ATCC
25996]
Length = 417
Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats.
Identities = 86/311 (27%), Positives = 141/311 (45%), Gaps = 7/311 (2%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
Y + D ++ V+A + D PASLTK+MTAY+ F L+ +T+S +
Sbjct: 66 YIVTDLHSHQVLASSNIDTQIEPASLTKMMTAYLTFKALENGTLRADQMLTVSDAGWKIE 125
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSA 149
S ++ + +K +IV+S ND A +AE++ + FVQ MN +K LG++
Sbjct: 126 GSRMFLIPKVPASVSDLIKGMIVQSGNDAATTLAEAMGGGSVDVFVQQMNEEAKRLGMTK 185
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
THF N G+ GH +T D+AILS + D+P+Y F IK + + PN N +
Sbjct: 186 THFKNPTGLAAEGHVSTVGDLAILSAALIHDYPKYYPVFSIKSFKYNNVEQPNRNLLLYR 245
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
DG+KTG T ++G+N+ AS+ + + ++++++G R S LL+
Sbjct: 246 DSNVDGLKTGHTESAGYNLAASSKRNGRRIVSIVVGTDSTEARASESGKLLNWALQAFDT 305
Query: 270 RKKINYI----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
K N Y+ + + E+V T N + + + K
Sbjct: 306 PKLYNGGEIISKVKVYKGSSKSVNVGFLEDVYITIPHDAGQNIKP-ILETVQPVVAPIRK 364
Query: 326 ITLLKN-KITK 335
L KI K
Sbjct: 365 GQSLGKLKIVK 375
>gi|313901633|ref|ZP_07835069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
subterraneus DSM 13965]
gi|313468095|gb|EFR63573.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
subterraneus DSM 13965]
Length = 521
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 79/320 (24%), Positives = 132/320 (41%), Gaps = 19/320 (5%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ + L+D +G V+ P PAS TK++TA V L
Sbjct: 177 VAPPPSIDAAAAVLMDQASGQVLFARNPHQRRAPASTTKILTAIVALE-----FGNLDDV 231
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+T+S++A+ S G +L L L+++S ND AVAIAE + +E F + MN
Sbjct: 232 VTVSEHAAATEGSTMDLVAGERYSLRELLWGLMLESGNDAAVAIAEHIAGSEAAFARLMN 291
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-KTDFPQYMHYFQIKGLEIKGK 198
T+ LGL THF N HG+ H+T+A D+A+++ D+ + K L
Sbjct: 292 ETALRLGLRDTHFTNPHGLHDPAHFTSAYDLAVMTRYALANDYFARLVCQPEKVLCRGDG 351
Query: 199 KY----PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ +TN + G+KTG T A+G +V+S + LIAV+L + D R
Sbjct: 352 DWVRILSSTNRLLWYHEWIRGVKTGTTGAAGPCLVSSGELEGRRLIAVVLDSGD---RWA 408
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII------NYNT 308
S +LL GF + P + + ++
Sbjct: 409 DSRALLEWGFDQFAPAQGGRAGDGVGQVAVARGRQPAVEARLAGDLTALVPPGLVPRVRR 468
Query: 309 QMKEAKDKESHFIDFEKITL 328
++ A+ E+ +++
Sbjct: 469 VLELARQVEAPVAAGQRLGT 488
>gi|312113134|ref|YP_004010730.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii
ATCC 17100]
gi|311218263|gb|ADP69631.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodomicrobium vannielii
ATCC 17100]
Length = 584
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 84/273 (30%), Positives = 144/273 (52%), Gaps = 6/273 (2%)
Query: 9 AMAMLSNIFPFLS------IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
A+ +L+ P + + ++D +TG ++ P PAS+TK+MT
Sbjct: 3 ALFLLAVSSPAEARRRASHAQSYSTASSAMVVDFHTGRILISRNATDPRFPASVTKVMTL 62
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F L++ K + T + +S A+ P+ G T+T+ + + ++ KSAND+AV
Sbjct: 63 YLLFDALRDGKLNMNTKLRVSAYAASQSPTKLGLDAGDTITVSDVIGAIVTKSANDMAVV 122
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE+L +E++F + M ++ +G+ T F NA G+ TTA+D+ IL+ + TD P
Sbjct: 123 VAEALAGSEEEFARRMTQKARTIGMLNTTFRNASGLPNSEQRTTAQDLVILARSVITDHP 182
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ F K + G+ Y N N + ++ G +GMKTGFT ASGFN++A+A +G++ LIAV
Sbjct: 183 ERSRVFSTKYFQYDGEIYRNHNTMLFSYEGMEGMKTGFTSASGFNLLATARRGEKRLIAV 242
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
+LG RN ++L +
Sbjct: 243 VLGGSSARVRNAAMRNILDASWSKAMTLTAAKK 275
>gi|144898029|emb|CAM74893.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
gryphiswaldense MSR-1]
Length = 424
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 81/260 (31%), Positives = 141/260 (54%), Gaps = 1/260 (0%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ + + + P + A ++ ++D + G+V+ PD PASLTK+MT Y++F
Sbjct: 27 ALMLMTILVLAPHTAHARDDR-YASIVVDADNGNVLYAVNPDRRSYPASLTKVMTLYLLF 85
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L++ K L + + +S +A+ PS K G + +++A+ L+ KSAND+AV +AE+
Sbjct: 86 DALEQGKLTLNSRMPVSAHATRQSPSKLNLKVGDRIDVEDAVLSLVTKSANDVAVVVAEA 145
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E F + M ++ LG+S+T + NA G+ G +T RD A L+ + +Y H
Sbjct: 146 IGGSEDDFAEMMTRKARQLGMSSTTYRNASGLPDMGQISTPRDQATLARALVKHHGRYYH 205
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
YF + +G+ N + + GADG+KTG+ ASGFN++ASA + + ++ V+ G
Sbjct: 206 YFSTRQFNWQGQPISTHNRLMLRYQGADGIKTGYINASGFNLIASAKRDGKRIVGVVFGG 265
Query: 247 LDRNTRNKVSASLLSMGFYN 266
R+ A +L GF
Sbjct: 266 NTAGWRDNNMAQILDKGFAR 285
>gi|295103490|emb|CBL01034.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
SL3/3]
Length = 410
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 91/325 (28%), Positives = 140/325 (43%), Gaps = 8/325 (2%)
Query: 15 NIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ LP L+D +G V+ E D AS+TK+MT + F +
Sbjct: 44 AVQTLTVTPPQITLPCRAAILIDQTSGTVLYEMNADQTMPIASITKVMTLLLTFEAVHAG 103
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ + T + +S++A S + G TLD LK + V SAND AVA+AE + +E
Sbjct: 104 RLTMDTAVPVSEHAYHMGGSQIWLEPGEQFTLDEMLKAICVSSANDAAVAVAELVGGSEP 163
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ--YMHYFQI 190
FVQ MN + LG+ T F NA G+ GH +TARD+AI+S I T P+ +
Sbjct: 164 AFVQQMNARAAELGMEHTTFRNACGLDTEGHLSTARDVAIMSRTILTTCPEVLHYTGIWT 223
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
L + NTN + + G G+KTG T +G I ASA + +LIAV+LGA
Sbjct: 224 DTLRGGQTQLVNTNKLLRRYNGITGLKTGTTGGAGVCITASATRDGLNLIAVVLGAPSSK 283
Query: 251 TRNKVSASLLSMGFYNKTDRK---KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R + + +LL GF ++ + + VP + T
Sbjct: 284 ERFEAATTLLDYGFAAYRAAPVPLPQERPLQLKVKGSTEETVPLDYAALPQTALLPAESA 343
Query: 308 TQMKEA-KDKESHFIDFEKITLLKN 331
Q+ + ++ + +
Sbjct: 344 GQLTVQLELPDTLEAPVTRGQTVGK 368
>gi|222085114|ref|YP_002543644.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
radiobacter K84]
gi|221722562|gb|ACM25718.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
radiobacter K84]
Length = 429
Score = 180 bits (455), Expect = 3e-43, Method: Composition-based stats.
Identities = 98/326 (30%), Positives = 162/326 (49%), Gaps = 4/326 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++FL+ ++ A++ P S A Y ++D TG V+A + D +PASLTK+M
Sbjct: 1 MKKFLMALSAAVVLLGAPVASFA----GSAYFIMDAKTGAVLASSNADDLNHPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F + K + I +S NA+ PP+ K G T+T+ A+ +I+KSAND A
Sbjct: 57 TLYMTFEAINRGKLSWNSKIPVSSNAAGKPPTKLGLKPGGTVTVREAVDGMIIKSANDAA 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE+L +E F + M ++ +G+ T FMNA G+ TTARDM+ L+ + +
Sbjct: 117 AAMAEALGGSESGFARLMTQKAREIGMRRTVFMNASGLPNMQQVTTARDMSTLAVALINN 176
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+PQ F G +G++ N + + G DG+KTG+T ASGFN+V++ G++ +I
Sbjct: 177 YPQEYRLFSQTGFTYRGQRVRGHNNLMYRYEGMDGIKTGYTNASGFNLVSAVRHGNRRVI 236
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
V++G R+ + ASLL + + EV + S +V
Sbjct: 237 GVVMGGATARGRDALMASLLDRYVPKAASSSTSRLVASIGGGKVKQVEVASASNDVAMEV 296
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKI 326
T+ + S + + +
Sbjct: 297 DTQTTATTRKRTDTAPVSAPLAYAAV 322
>gi|189024322|ref|YP_001935090.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
S19]
gi|261325261|ref|ZP_05964458.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
gi|261752478|ref|ZP_05996187.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
513]
gi|261758361|ref|ZP_06002070.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
gi|265998302|ref|ZP_06110859.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
gi|189019894|gb|ACD72616.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
S19]
gi|261301241|gb|EEY04738.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
gi|261738345|gb|EEY26341.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
gi|261742231|gb|EEY30157.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
513]
gi|262552770|gb|EEZ08760.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
Length = 461
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 11/333 (3%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ L+ + ++A+ + ++D NTG + D PAS
Sbjct: 1 MKKAAQVSLLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
LTK+MT Y++F + + T I +S A+ PP+ F+ G ++ ++A +I KS
Sbjct: 61 LTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKS 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND+A A+ E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL
Sbjct: 121 ANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGM 180
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
++ FP+ YF + +G+ N +G G DG+KTG+T ASG+N+V+S
Sbjct: 181 ALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLD 240
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
+ L+AV++G +R+ A L+ + +E P +
Sbjct: 241 GRRLVAVVMGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVAS 294
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + + +D + I I
Sbjct: 295 IDLPKAKRAPVPVARIAVEDIINAEIGEGDIDQ 327
>gi|255020045|ref|ZP_05292118.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
51756]
gi|254970574|gb|EET28063.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
51756]
Length = 381
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 77/347 (22%), Positives = 143/347 (41%), Gaps = 16/347 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNK----------LPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+I+A + + + T + Y L+D TG ++A P PAS
Sbjct: 5 LILATGLAAKALAGTPTSATPALVPPPPALPGVKSYVLMDFRTGAILAAKNPQLQLPPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
LTKLMTAY+ + L + + I +S A S+ + +T+D + LI+ S
Sbjct: 65 LTKLMTAYLSYEALADGRLRWHERIPVSTVAWHTGGSSMFIQPNLPVTVDQLMHGLIIDS 124
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND AVA+A+++ + FV MN T+ LGL+ H+ + G+ G + +A ++A LS
Sbjct: 125 GNDAAVALAQAVAGSRAAFVDEMNATAAQLGLTGAHYTDVDGLPHPGLHLSAMNIAELSR 184
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ +PQ + +I+ + N A+ DG+KTG T A+G + + +
Sbjct: 185 DLIARYPQVLQISRIQYYRYNHITQRSWNPALFGHPHVDGLKTGHTQAAGHCMDTTIDRH 244
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
+ LIAV++GA SL + D + + ++ + + + E
Sbjct: 245 GRRLIAVVMGAQSWPAGVHDVMSLFDYAYRFSHDHELLKAGQIVGTYKDAALDPDHFPVE 304
Query: 296 ------VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
V + + + + + ++ ++ K
Sbjct: 305 AAHTVWVSAFEGQAHEIRRVLHYDQLGGRAVAQGTPVGSMRFELNGK 351
>gi|260752472|ref|YP_003225365.1| serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|258551835|gb|ACV74781.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 400
Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats.
Identities = 77/354 (21%), Positives = 135/354 (38%), Gaps = 20/354 (5%)
Query: 1 MRQFLVI---IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M+ L A+ + + P + D ++G V+ D PAS+
Sbjct: 9 MKPVLFFSASAALCFTAAASYAAAPPFETIAPIAYMKDLSSGAVLYAKDADRRMPPASMA 68
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-----PSNSTFKKGSTMTLDNALKLLI 112
K+MT YV F +K+ + L PIT+ + S ++ N L ++
Sbjct: 69 KMMTVYVAFDLIKKGQLKLDQPITVQPETWKKWHGPSAGSTMFLSPNEQVSAANLLHGIV 128
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMA 171
S ND V ++E + TE+ FV MN ++ +GL+ +HF A+G G Y TA D+
Sbjct: 129 TLSGNDACVVLSEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVTAHDLE 188
Query: 172 ILSWRIKTDFPQYMHY--------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
L+ DFP + K N + +G GADG+KTG T
Sbjct: 189 TLAEATIRDFPDLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKTGHTDE 248
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DF 280
+G+ SA Q + L+ V+ G R + S + ++ GF + + ++
Sbjct: 249 AGYGFTGSAEQRGRRLVMVMAGLPSNAARREQSIAFMNWGFRAWKSKPVVRKGVRVQTAE 308
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
Q S+ V ++ I + + + + + + +
Sbjct: 309 VQGGSSSTVGLVAPRDLAVTLPITASDQMKVKVVYQGPIKAPIAQGQHIADLVV 362
>gi|148379819|ref|YP_001254360.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
ATCC 3502]
gi|153934177|ref|YP_001384117.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
ATCC 19397]
gi|153937458|ref|YP_001387657.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
Hall]
gi|148289303|emb|CAL83399.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
ATCC 3502]
gi|152930221|gb|ABS35721.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A
str. ATCC 19397]
gi|152933372|gb|ABS38871.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A
str. Hall]
Length = 407
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 93/377 (24%), Positives = 152/377 (40%), Gaps = 42/377 (11%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIA-----------------------ETNKLPYYT 32
M++ F VII + + +F A
Sbjct: 1 MKRKIYYFFSVIITITFIFGVFVTPVSAYDQQNQLKKEEKAEDKDSNKEGDSDVDAKSAL 60
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S
Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
G T+++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F
Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
N G+ GH T+A D++I+S + + I N N V
Sbjct: 181 KNCTGLSAEGHKTSAYDISIMSRELLKHKQILKYTGTYMETISEGRKSPIGLVNHNKLVR 240
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF
Sbjct: 241 FFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKFE 300
Query: 269 DRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK------EAKDKES 318
+ + + + EE+ ++ K + + K +
Sbjct: 301 CKTLVKKGDVISKVPLNSKGDKYFMAKSCEELDAIIEKGKKTKITNKCIIDENKKEYKIN 360
Query: 319 HFIDFEKITLLKNKITK 335
+ + N I K
Sbjct: 361 EEVGICEFYSDGNLIGK 377
>gi|295402720|ref|ZP_06812662.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
thermoglucosidasius C56-YS93]
gi|294975251|gb|EFG50887.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
thermoglucosidasius C56-YS93]
Length = 450
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 75/369 (20%), Positives = 135/369 (36%), Gaps = 39/369 (10%)
Query: 7 IIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ + + PF + + L+D NTG ++ + D AS+TK+MT
Sbjct: 12 FLMIGLCFYFLPFHAAKAAGDPLNIEADAAILVDANTGRILYQKNIDTVLGIASMTKMMT 71
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
Y++ +KEK+ T S S ++ L A A
Sbjct: 72 EYLLLEAVKEKRVKWDQQYTPSDYVYRLSQDRSLSNVPLRKDGKYTIRELYEAMAIYSAN 131
Query: 122 AIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------H 163
A ++ + +E+ FV+ MN + LGL F+N+ G+ +
Sbjct: 132 AATVAIAEIVGGSEQNFVKMMNEKANQLGLKGYKFVNSTGLSNEDLKGFHPEGTNQSEEN 191
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGAD 214
+AR +A L++ + ++P+ + + K N NW V + G D
Sbjct: 192 VMSARSVATLAYHLLKEYPEVLETASTPRKIFREGTDDQIKMDNWNWMLPGLVHAYEGVD 251
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-----NTRNKVSASLLSMGFYNKTD 269
G+KTG+T +G+ +A + I V++ A R + + LL GF N +
Sbjct: 252 GLKTGYTEFAGYCFTGTAERNGVRFITVVMNAKSNGKSTIEARFEQTRKLLDYGFSNYSM 311
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+K + + + L T K + +E K + + D +K+T
Sbjct: 312 KKLYSKGYELKGKSVLPVVKGKEKSVAIATDKPLSLVVKNGEEKKYRPVYVFDKKKLTAD 371
Query: 330 KNKI--TKK 336
KK
Sbjct: 372 GELTAPVKK 380
>gi|260565574|ref|ZP_05836058.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
16M]
gi|260151642|gb|EEW86736.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
16M]
gi|326538900|gb|ADZ87115.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis
M5-90]
Length = 461
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 11/333 (3%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ L+ + ++A+ + ++D NTG + D PAS
Sbjct: 1 MKKAAQVSLLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
LTK+MT Y++F + + T I +S A+ PP+ F+ G ++ ++A +I KS
Sbjct: 61 LTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKS 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND+A A+ E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL
Sbjct: 121 ANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGM 180
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
++ FP+ YF + +G+ N +G G DG+KTG+T ASG+N+V+S
Sbjct: 181 ALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLD 240
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
+ L+AV++G +R+ A L+ + +E P +
Sbjct: 241 GRRLVAVVMGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVAS 294
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + + +D + I I
Sbjct: 295 IDLPKTKRAPVPVARIAVEDIINAEIGEGDIDQ 327
>gi|229173162|ref|ZP_04300712.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus MM3]
gi|228610339|gb|EEK67611.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus MM3]
Length = 442
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 73/375 (19%), Positives = 133/375 (35%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ E D
Sbjct: 12 KRFIAIVTVLTLFCSIVVTSGRATAETVSAIDVEAGSAILVEANSGKILYEKNADESLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKIKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 132 AMAIYSANGATIALVEEIAGKEVDFVKMMNDKSKEFGMKNYKFVNSTGLTNYDLKGHHPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N N
Sbjct: 192 GTTPDEKNKMSARDCAILAKRLVQDFPKILDTAKIPKKTFQNGGKYPIDMVNFNMMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHTARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYI-------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+K + V + V + + +
Sbjct: 312 FEMKKVHGKDSVVKGHETVHVANAKDKDVVVQTKQAVSLPMPKGNKDVYKKEFKVSNNEQ 371
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 372 EAPIKKGLTISKMII 386
>gi|170748801|ref|YP_001755061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
radiotolerans JCM 2831]
gi|170655323|gb|ACB24378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
radiotolerans JCM 2831]
Length = 509
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 102/310 (32%), Positives = 159/310 (51%), Gaps = 6/310 (1%)
Query: 2 RQFLVIIAMA--MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
R+ V +A +L + A +P + D ++G VI P PW PAS+TKL
Sbjct: 7 RRLTVGLAALTGLLGAGLVGIGAANAVTVPI-LVADVDSGKVIYAQAPTDPWYPASITKL 65
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT YV +++ K L + ITIS A+ PPS FK G+ +TLDNALK+++VKSAND+
Sbjct: 66 MTTYVALDLVRQGKVSLDSMITISAAAAAEPPSKMGFKPGTQLTLDNALKIIMVKSANDV 125
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A AI ESL + + F MN T++ +G+ + + N +G+ +T+ARDMA+L+ +
Sbjct: 126 AYAIGESLGGSVENFAALMNETAQRIGMHDSRWYNPNGLPDPRQWTSARDMAVLARALIR 185
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
DFP F I ++ N N +G + G DGMKTGF C+ GFN+VA+A + + +
Sbjct: 186 DFPDSHDLFSISAIQFGRAVMANHNGLLGRYPGTDGMKTGFICSGGFNVVATATRNGRRI 245
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
+ +++G R+ +A L F + D + P++ VC
Sbjct: 246 VTIVMGQPSPRERDVKTADLFDYAF---GQSAGWSSPTLDALPASAIPAPPDMRPFVCGG 302
Query: 300 QKEIINYNTQ 309
+K +
Sbjct: 303 KKPPAIEDGP 312
>gi|56551985|ref|YP_162824.1| serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
mobilis ZM4]
gi|56543559|gb|AAV89713.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 400
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 77/354 (21%), Positives = 135/354 (38%), Gaps = 20/354 (5%)
Query: 1 MRQFLVI---IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M+ L A+ + + P + D ++G V+ D PAS+
Sbjct: 9 MKPVLFFSASAALCFTAAASYAAAPPFETIAPIAYMKDLSSGAVLYAKDADRRMPPASMA 68
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-----PSNSTFKKGSTMTLDNALKLLI 112
K+MT YV F +K+ + L PIT+ + S ++ N L ++
Sbjct: 69 KMMTVYVAFDLIKKGQLKLDQPITVQPETWKKWHGPSAGSTMFLSPNEQVSAANLLHGIV 128
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMA 171
S ND V ++E + TE+ FV MN ++ +GL+ +HF A+G G Y TA D+
Sbjct: 129 TLSGNDACVVLSEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVTAHDLE 188
Query: 172 ILSWRIKTDFPQYMHY--------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
L+ DFP + K N + +G GADG+KTG T
Sbjct: 189 TLAEATIRDFPDLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKTGHTDE 248
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DF 280
+G+ SA Q + L+ V+ G R + S + ++ GF + + ++
Sbjct: 249 AGYGFTGSAEQRGRRLVMVMAGLPSNAARREQSIAFMNWGFRAWKSKPVVRKGVRVQTAE 308
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
Q S+ V ++ I + + + + + + +
Sbjct: 309 VQGGSSSTVGLVAPRDLAVTLPITASDQMKVKVVYQGPIKAPIAQGQHIADLVV 362
>gi|315296383|gb|EFU55683.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 16-3]
Length = 347
Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats.
Identities = 86/310 (27%), Positives = 141/310 (45%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + ++ K + + N V +E + + + K D +
Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIVLGTVQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|229011746|ref|ZP_04168928.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus mycoides DSM 2048]
gi|228749543|gb|EEL99386.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus mycoides DSM 2048]
Length = 442
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 74/375 (19%), Positives = 137/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ + D
Sbjct: 12 KRFITIVTVLTLFCSMAVTFGRASAETVPAIDVEAGSAILVEANSGKILYQKNADESLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 132 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N NW
Sbjct: 192 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLISVVIKANSHTARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+K + V + V + + + +
Sbjct: 312 FEVKKVYGKDSVVKGHETVRVANAKDKDIVVQTKQAVSLPMPKGNKDVYKKEFKVSNKEQ 371
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 372 EAPIKKGVTISQMII 386
>gi|229145091|ref|ZP_04273484.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-ST24]
gi|228638412|gb|EEK94849.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-ST24]
Length = 442
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 72/375 (19%), Positives = 135/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ E D
Sbjct: 12 KRFITIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYEKNADESLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 132 AMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHPE 191
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ ++ +I + N NW
Sbjct: 192 GTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T + + + LI+V++ A R + L GF N
Sbjct: 252 IKQYEGVDGLKTGTTPEARDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFYQQ-------NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ + + V + V + + + +
Sbjct: 312 FEVKNFYGKDSVIKGYETVRVANAKDKDVVVQTKQAVSLPMSKGNKDIYKKEFKVLNKEQ 371
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 372 EAPIKKGVTISKMII 386
>gi|241761932|ref|ZP_04760017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|241373612|gb|EER63184.1| Serine-type D-Ala-D-Ala carboxypeptidase [Zymomonas mobilis subsp.
mobilis ATCC 10988]
Length = 400
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 77/354 (21%), Positives = 135/354 (38%), Gaps = 20/354 (5%)
Query: 1 MRQFLVI---IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M+ L A+ + + P + D ++G V+ D PAS+
Sbjct: 9 MKPVLFFSASAALCFTAAASYAAAPPFETIAPIAYMKDLSSGAVLYAKDADRRMPPASMA 68
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-----PSNSTFKKGSTMTLDNALKLLI 112
K+MT YV F +K+ + L PIT+ + S ++ N L ++
Sbjct: 69 KMMTVYVAFDLIKKGQLKLDQPITVQPETWKKWHGPSAGSTMFLSPNEQVSAANLLHGIV 128
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMA 171
S ND V ++E + TE+ FV MN ++ +GL+ +HF A+G G Y TA D+
Sbjct: 129 TLSGNDACVVLSEGIAGTEQAFVALMNEKAQKIGLTNSHFGTANGWPDGGATYVTAHDLE 188
Query: 172 ILSWRIKTDFPQYMHY--------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
L+ DFP + K N + +G GADG+KTG T
Sbjct: 189 TLAEATIRDFPDLYRQFYGQREFTWGKTMGSGKDITQSNRDPLLGVIDGADGLKTGHTDE 248
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DF 280
+G+ SA Q + L+ V+ G R + S + ++ GF + + ++
Sbjct: 249 AGYGFTGSAEQRGRRLVMVMAGLPSNAARREQSIAFMNWGFRAWKSKPVVRKGVRVQTAE 308
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
Q S+ V ++ I + + + + + + +
Sbjct: 309 VQGGSSSTVGLVAPRDLAVTLPITASDQMKVKVVYQGPIKAPIAQGQHIADLVV 362
>gi|260754913|ref|ZP_05867261.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
str. 870]
gi|260675021|gb|EEX61842.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
str. 870]
Length = 461
Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats.
Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 11/333 (3%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ L+ + ++A+ + ++D NTG + D PAS
Sbjct: 1 MKKAAQVSLLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
LTK+MT Y++F + + T I +S A+ PP+ F+ G ++ ++A +I KS
Sbjct: 61 LTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKS 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND+A A+ E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL
Sbjct: 121 ANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGM 180
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
++ FP+ YF + +G+ N +G G DG+KTG+T ASG+N+V+S
Sbjct: 181 ALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLD 240
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
+ L+AV++G +R+ A L+ + +E P +
Sbjct: 241 GRRLVAVVMGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEDPQVVAS 294
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + + +D + I I
Sbjct: 295 IDLPKAKRAPVPVARIAVEDIINAEIGEGDIDQ 327
>gi|153940158|ref|YP_001391119.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum F str.
Langeland]
gi|152936054|gb|ABS41552.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F
str. Langeland]
Length = 407
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 140/325 (43%), Gaps = 14/325 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ TG VI E P + PAS+TK+MT + + K LT +TIS+
Sbjct: 53 DVDAKSALLIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISE 112
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NA + S G T+++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++
Sbjct: 113 NAKKMGGSTMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQK 172
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD----FPQYMHYFQIKGLEIKGKKY 200
L + T F N G+ GH T+A D++I+S + + I
Sbjct: 173 LNMKDTSFKNCTGLSVEGHKTSAYDISIMSRELLKHKQILKYTGTYMETISEGRKSPIGL 232
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N V F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L+
Sbjct: 233 VNHNKLVRFFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLM 292
Query: 261 SMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK----- 311
+ GF + + + + EE+ ++ K
Sbjct: 293 NYGFSKFECKTLVKKGDVISKVPLNSKGDKYFMAKSCEELDAIIEKGKKTKITNKCIIDE 352
Query: 312 -EAKDKESHFIDFEKITLLKNKITK 335
+ + K + + + N I K
Sbjct: 353 NKKEYKINEEVGICEFYSDGNLIGK 377
>gi|150016747|ref|YP_001309001.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
NCIMB 8052]
gi|149903212|gb|ABR34045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
NCIMB 8052]
Length = 396
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 82/315 (26%), Positives = 143/315 (45%), Gaps = 10/315 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L++ +G ++ E D + PAS+TK+MT + + K L +T S+
Sbjct: 42 NIEARSALLMEPMSGKILYEKNADEKFAPASVTKIMTMLITMEGVDSGKIKLDDKVTCSE 101
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NA + S G T++ LK + + S ND AVA+AE L TE++FV MN ++
Sbjct: 102 NAKKMGGSTMLLDTGEIRTVEELLKGVAIASGNDAAVALAEYLGGTEQEFVNMMNKRAQE 161
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----PQYMHYFQIKGLEIKGKKY 200
LG+ T F N +G+ GH +TA+D+AI+S + + I +
Sbjct: 162 LGMVNTTFKNCNGLPADGHMSTAKDIAIMSKELLKHPKVLKYTGTYMDNISEGRKSPIEL 221
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N V F G DG+KTGFT + + I A+A + +++VI+GA RN+ + LL
Sbjct: 222 VNHNKLVRFFEGCDGLKTGFTDEAKYCISATATRNGVRMLSVIMGAPTYKIRNRDAGVLL 281
Query: 261 SMGFYNKTDRKKINYIIKDFYQ----QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
+ GF +K ++ + Q + +++ + N + + K D
Sbjct: 282 NYGFSKYEGKKLVSKDEEIDKVYMDEQTDKFFMAMAKDDLNVILPKGDNKDLEKKIVID- 340
Query: 317 ESHFIDFEKITLLKN 331
+++ ++
Sbjct: 341 -ELRKEYKAGDIVGK 354
>gi|134299097|ref|YP_001112593.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
MI-1]
gi|134051797|gb|ABO49768.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
MI-1]
Length = 437
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 88/327 (26%), Positives = 155/327 (47%), Gaps = 12/327 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A P + L++ +TG VI + P++PAS+TKLM Y++ +
Sbjct: 49 ATALTYAPGICNPINLTAKGAILVNQDTGQVIYADQEHQPFHPASITKLMVLYILLENIH 108
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
P+ SK + ++G ++L+ +K ++V SAND AVA+AE + +
Sbjct: 109 NGVLHWEDPVQASKKVERINEAQIYLREGEVLSLEEMIKAMVVASANDAAVALAERVAGS 168
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGHYTTARDMAILSWRIKTDFPQYMHY 187
E FV+ MN + LGL +HF+NA G+ + HY +A D+A+L+ + ++P+ + +
Sbjct: 169 EAAFVEIMNAKALELGLRNSHFINASGLPASNSYNHYMSAYDIALLAKYLLEEYPEVLEF 228
Query: 188 FQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
++ I+ +P NTN +G F G DG+KTG+T +G+ +VA+A + Q +I+V+LG
Sbjct: 229 SRLTTTTIRNGSFPIANTNSLLGIFQGMDGLKTGYTDRAGWCLVATAQRNGQRMISVVLG 288
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKI-------NYIIKDFYQQNLSNEVPNISEEVCT 298
+ R + +LL+ GF + I NYI NI +
Sbjct: 289 SPSNEIRKANTTALLNYGFQHYQRVNNIYVNGIKCNYIQSPLAVDGTVLVPINILSDTMG 348
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEK 325
+ + + + +D +K
Sbjct: 349 LKVQYQKEKIFLSGWGTQVEFQVDSDK 375
>gi|319935945|ref|ZP_08010369.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. 29_1]
gi|319809059|gb|EFW05555.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. 29_1]
Length = 381
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 81/346 (23%), Positives = 152/346 (43%), Gaps = 12/346 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M + ++I ML +FP + AE L++ +T V+ ++ PAS
Sbjct: 1 MIKKILICLFVMLLCMFPKVVYAEDLKLAPNAASSVLMEASTKQVLYSSHETDKLFPAST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MT ++F + + +T S A+ S ++G M++ + K + + SA
Sbjct: 61 TKIMTMILMFEAINKGTLKWDDVLTCSAYAASMGGSQIYLEEGEQMSVSDLFKGISIASA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND V + E + T FV+ MN +K L L+ THFMN G+ HYT A D+ +++
Sbjct: 121 NDACVMVGERIAGTNDGFVKMMNEKAKELNLTNTHFMNPTGLHDDNHYTCALDLGLMASY 180
Query: 177 IKT------DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ ++ I+ + NTN + ++ GADG+KTG+T +G+ IV+
Sbjct: 181 LIQIGGDRLFATTSLYDSYIRENSAQKFWLVNTNKLLKSYEGADGLKTGYTKEAGYCIVS 240
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--IIKDFYQQNLSNE 288
+A + LIAV++ + RN+ + LL GF + II+ +N +
Sbjct: 241 TAKRNGLRLIAVVMKESEPKVRNQEVSQLLDYGFSLYENVILFKKDDIIEKIPIENARQK 300
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + + + ++ + + +K + + +
Sbjct: 301 SVEVVCKEDVVYVKDKSAQDEVTYEMNYTNLVPPIKKGETIGHILL 346
>gi|221235180|ref|YP_002517616.1| D-alanyl-D-alanine serine-type carboxypeptidase [Caulobacter
crescentus NA1000]
gi|220964352|gb|ACL95708.1| D-alanyl-D-alanine serine-type carboxypeptidase [Caulobacter
crescentus NA1000]
Length = 451
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 98/320 (30%), Positives = 152/320 (47%), Gaps = 15/320 (4%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D N+G V+ + D P PAS+TK+MT Y+ F L E + LT I +S A+
Sbjct: 64 AAIVIDANSGEVLYDKRGDSPRYPASITKVMTLYLTFEALSEGRLKLTDQIVMSPRAAAQ 123
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
P+ + G +MT+D A+K + VKSAND+A A+AE L +E +F M + LG+
Sbjct: 124 APTKIGLRPGESMTVDEAIKAMAVKSANDVATAVAERLAGSESRFAALMTLRGQELGMRN 183
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T F+NA G+ +TARD+AILS DFPQY YF +KG +G N + +
Sbjct: 184 TRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSVKGFYFRGNYVKGHNRLLDS 243
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY---- 265
G DG+KTG+T ASGFN+ SA++ + LIAV+LG R+ LL GF
Sbjct: 244 MEGFDGLKTGYTNASGFNLAGSAVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTGFDVIKR 303
Query: 266 -----------NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
N + + I + +Q ++ + + + ++ A+
Sbjct: 304 RSRGERTTIAANIYEDEPSGPIERPSAEQGDGDQAGLSIVLTENPRSAPVKVSPTLRGAQ 363
Query: 315 DKESHFIDFEKITLLKNKIT 334
+ ++
Sbjct: 364 AATPVKAAKKPKGEWGVQVG 383
>gi|16126400|ref|NP_420964.1| D-alanyl-D-alanine carboxypeptidase [Caulobacter crescentus CB15]
gi|13423656|gb|AAK24132.1| D-alanyl-D-alanine carboxypeptidase [Caulobacter crescentus CB15]
Length = 435
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 98/320 (30%), Positives = 152/320 (47%), Gaps = 15/320 (4%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D N+G V+ + D P PAS+TK+MT Y+ F L E + LT I +S A+
Sbjct: 48 AAIVIDANSGEVLYDKRGDSPRYPASITKVMTLYLTFEALSEGRLKLTDQIVMSPRAAAQ 107
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
P+ + G +MT+D A+K + VKSAND+A A+AE L +E +F M + LG+
Sbjct: 108 APTKIGLRPGESMTVDEAIKAMAVKSANDVATAVAERLAGSESRFAALMTLRGQELGMRN 167
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T F+NA G+ +TARD+AILS DFPQY YF +KG +G N + +
Sbjct: 168 TRFVNASGLPDSRQISTARDLAILSRATMRDFPQYYSYFSVKGFYFRGNYVKGHNRLLDS 227
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY---- 265
G DG+KTG+T ASGFN+ SA++ + LIAV+LG R+ LL GF
Sbjct: 228 MEGFDGLKTGYTNASGFNLAGSAVRDGRRLIAVVLGGPSTAWRDNNMEDLLLTGFDVIKR 287
Query: 266 -----------NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
N + + I + +Q ++ + + + ++ A+
Sbjct: 288 RSRGERTTIAANIYEDEPSGPIERPSAEQGDGDQAGLSIVLTENPRSAPVKVSPTLRGAQ 347
Query: 315 DKESHFIDFEKITLLKNKIT 334
+ ++
Sbjct: 348 AATPVKAAKKPKGEWGVQVG 367
>gi|147678303|ref|YP_001212518.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
thermopropionicum SI]
gi|146274400|dbj|BAF60149.1| D-alanyl-D-alanine carboxypeptidase [Pelotomaculum
thermopropionicum SI]
Length = 371
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 81/327 (24%), Positives = 133/327 (40%), Gaps = 17/327 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P ++ L+D TG V PASLTK+MTA V
Sbjct: 19 PAVAAPPAITADAAILMDVQTGQVYYAKNHYRRAEPASLTKIMTAVVALENGNLG----D 74
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ A+ S +KG +TL+ LK ++ SAND VAIAE + + ++F++
Sbjct: 75 VVTVGGRAAAVSMGSIIDLRKGEKITLEELLKAALISSANDSTVAIAEHVGGSHERFIKM 134
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK----TDFPQYMHYFQIKGL 193
MN + LGL T + N +G HYTTARD+A+L+ + ++ +
Sbjct: 135 MNAKAAVLGLFGTRYANTNGYHDPNHYTTARDLAVLTRCALGHPKFNELVQTKEAAVRWV 194
Query: 194 EI--KGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
E + +K N+N G + G DG+KTG T +G + ASA + + LIAV+L + +
Sbjct: 195 EPPEREEKIINSNRLLFGGYEGIDGVKTGTTPMAGNCLAASATREGRRLIAVVLHS---D 251
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R + L GF + K + V ++E+ + + +
Sbjct: 252 NRYQDCVRLFEYGFNVIRPVLVVRAGEVVAKRPVTGGSAGAVEAVAEKDLEVRLDPDDLA 311
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKIT 334
K + +K + +
Sbjct: 312 KLEKRVETGGPVAAPVKKGQKIGESVY 338
>gi|229051351|ref|ZP_04194858.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH676]
gi|228722004|gb|EEL73442.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH676]
Length = 442
Score = 179 bits (453), Expect = 5e-43, Method: Composition-based stats.
Identities = 74/375 (19%), Positives = 136/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ E D
Sbjct: 12 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYEKNADESLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 132 AMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHPE 191
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFPQ ++ +I + N NW
Sbjct: 192 GTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFYQQ-------NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ + + V + V + + + +
Sbjct: 312 FEVKNFYGKDSVIKGYETVRVANAKDKDVVVQTKQAVSLPMSKGNKDIYKKEFKVLNKEQ 371
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 372 EAPIKKGVTISKMII 386
>gi|251794126|ref|YP_003008857.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2]
gi|247541752|gb|ACS98770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. JDR-2]
Length = 428
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 83/332 (25%), Positives = 150/332 (45%), Gaps = 26/332 (7%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L+D +TG V+ E D P PAS+TK+MT Y+V +K K IT+S+ A+
Sbjct: 49 SSAILIDADTGQVVYEVNADEPRPPASMTKMMTEYIVLEQIKSKALNWDEMITVSEEAAN 108
Query: 89 YP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
P S +G + + + V SAND +A+A ++ +E+ FV+ MN T++ LG
Sbjct: 109 TPKDGSQVYLAQGEQYKVKDLYMAMAVGSANDATIALASAIGGSEQGFVEKMNETAQKLG 168
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---KYPNT 203
L++ H+ +A G+ + A+D A L+ I + P+++ Y + + + N
Sbjct: 169 LTSAHYTSATGLADTTVIS-AKDQAKLAQIIIKNDPEFLEYASTTEYKFRPRDDKPIVNI 227
Query: 204 NWAVGT-----------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
NW + + + G DGMKTG+ A+G+ + +GDQ I+V++ + R
Sbjct: 228 NWMLASNKSNTYLKAFAYDGVDGMKTGYISAAGYTFTGTVKRGDQRYISVVMNTKSKEAR 287
Query: 253 NKVSASLLSMGFYNKTDRKKI------NYIIKDFYQQNLSNEVPNISE-EVCTTQKEIIN 305
+A L + F + + I ++ + VP I+E ++ K+ +
Sbjct: 288 FNETAKLYNYAFNSLEKKTVIPAKSVVEKAESVKIKKGVKKSVPIITESDISLIVKKGAD 347
Query: 306 YNTQMK--EAKDKESHFIDFEKITLLKNKITK 335
++ E K E + ++ K
Sbjct: 348 PKVELTGYELKKPEELVAPIKAGQVVGTATYK 379
>gi|53803228|ref|YP_115023.1| D-alanyl-D-alanine carboxypeptidase [Methylococcus capsulatus str.
Bath]
gi|53756989|gb|AAU91280.1| putative D-alanyl-D-alanine carboxypeptidase [Methylococcus
capsulatus str. Bath]
Length = 362
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 86/272 (31%), Positives = 128/272 (47%), Gaps = 1/272 (0%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M + L ++ + E P +++ + V+ E D +PASLTK+
Sbjct: 2 MSRRLCRFVGIVVVAVAVGWVAGEAVAAPYSALVMEVESDRVLYERNADEIRHPASLTKM 61
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT Y+VF L + + L S A+ PS + G +T++ + L+ SAND
Sbjct: 62 MTLYLVFEALVQGRISLYDTFYASSYAASRSPSRIGLRPGDPLTVEEGILALVTCSANDA 121
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A + E L +E F M ++ LG+S T F NA G+ TTARDM L +
Sbjct: 122 AATLGEGLAGSEPAFAAMMTRKARELGMSQTVFRNASGLPDPEQVTTARDMYRLGKALLK 181
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
FPQY YF + +G+ + N N + + GADG+KTGF ASGFN+VASA + L
Sbjct: 182 HFPQYYPYFSTSRFQYRGRSFHNHNHLLENYYGADGIKTGFVNASGFNLVASARRNGVRL 241
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
+ V+ G R+ +L GF R+
Sbjct: 242 VGVVFGGNSSFRRDAHMRDILDDGFAQIEGRE 273
>gi|300854313|ref|YP_003779297.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
13528]
gi|300434428|gb|ADK14195.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
13528]
Length = 435
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 81/349 (23%), Positives = 149/349 (42%), Gaps = 25/349 (7%)
Query: 5 LVIIAMAMLSNIFPFLSIAET---------------NKLPYYTLLDTNTGHVIAENYPDH 49
++I+ + + + + L++ +G VI E
Sbjct: 46 ILILFFITVLWLPVVNAEPLSESNKKEMNSTESGLNINARSALLMEPASGKVIFEKSSHE 105
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
PAS+TK+MT + + + L+ +T+S+NA + S+ G ++++ +K
Sbjct: 106 KLEPASVTKIMTMLLTMEAVDSGRISLSDKVTVSENAKKMGGSSMLLDTGEVRSVEDLIK 165
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+ + S ND AVA+AE L +E +FVQ MN + LG+ T F N G+ + GH TTA D
Sbjct: 166 GIGIASGNDAAVAMAEYLGGSEDQFVQLMNKRAAELGMKDTSFKNCTGLSEDGHLTTAYD 225
Query: 170 MAILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+A++S + + I + N N V F G DG+KTGFT ++
Sbjct: 226 IALMSRELLKHTRILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTSSAK 285
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFY 281
+ I A+A + ++AVI+G+ RNK ++ +++ GF + +
Sbjct: 286 YCISATATRDGARMLAVIMGSPTYKVRNKDASMMMNYGFSKYFGKNILKKGADVEKIPLN 345
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + SE++ ++ K DK + ++K +
Sbjct: 346 KAGDRFFIAKASEDLKVVVEKGKESKITYKCVIDK--NKKQYKKGEKVG 392
>gi|13473090|ref|NP_104657.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
gi|14023838|dbj|BAB50443.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
Length = 389
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 113/334 (33%), Positives = 184/334 (55%), Gaps = 10/334 (2%)
Query: 2 RQFLVIIAM-AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
R FL + + A++ ++ ++A + D G ++ W PASL+KLM
Sbjct: 4 RHFLKLFSAGAIMLSVLAGSALANPV-----VVFDLKNGQILQHQDAFKRWYPASLSKLM 58
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F + + L +PI ++K+++ PPS FK GS M LDNALK+++VKSANDIA
Sbjct: 59 TAYVTFRAIAAGEVQLDSPIKVTKHSAGEPPSKMGFKPGSVMRLDNALKMMLVKSANDIA 118
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+ E++ ++ F + MN + LG++ THF+N +G+ YTTARD+++L I+ +
Sbjct: 119 MAVGENVGGSQAAFAERMNAEAARLGMNGTHFVNPNGLYSPDQYTTARDLSVLVMAIRRE 178
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQY +F I+GL + K PN N +G + GADGMKTGF C SGFN++ SA + ++L+
Sbjct: 179 FPQYAPWFSIEGLAVGKKAIPNYNLLIGRYPGADGMKTGFVCPSGFNMIGSATRNGRTLV 238
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AV+LG +R + +A LL GF + + + ++ +E+C +
Sbjct: 239 AVVLGEKSAVSRAEAAAKLLDQGFD---TPTAGSATVATLAPYGDTVSPNDMHDEICKKK 295
Query: 301 KEIINYNTQMKEAKDKESHFIDF-EKITLLKNKI 333
K + A K++ + EK+ + +
Sbjct: 296 KTSEEQSEAPPAAAAKDAPKSPYQEKLDHVPTLV 329
>gi|300935769|ref|ZP_07150733.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
gi|300974063|ref|ZP_07172437.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
200-1]
gi|300308960|gb|EFJ63480.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
200-1]
gi|300459040|gb|EFK22533.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 21-1]
gi|315285607|gb|EFU45049.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
110-3]
gi|324015750|gb|EGB84969.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 60-1]
Length = 347
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 85/310 (27%), Positives = 140/310 (45%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + ++ K + + N +E + + + K D +
Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|51892723|ref|YP_075414.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
IAM 14863]
gi|51856412|dbj|BAD40570.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
IAM 14863]
Length = 401
Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats.
Identities = 87/347 (25%), Positives = 141/347 (40%), Gaps = 30/347 (8%)
Query: 6 VIIAMAMLSNIFPFLS-------------IAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
+I A+ ++S + + L+D TG V+ E +
Sbjct: 11 MIAALLLISGAEAAAAPRPLVDHYRDVVESPPSLWAHGAILMDAATGDVLWERNAHVRLH 70
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS TK++TA + + L +T+SK A++ P S+ ++G TL + + L+
Sbjct: 71 PASTTKVLTALIALE-----RGDLDARVTVSKRAAQTPGSSMYLREGEVHTLHDLVHGLL 125
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S ND AVAIAE + + + F MN ++ LG +HF+N HG+ H +TA D+A+
Sbjct: 126 MLSGNDAAVAIAEHIAGSVEAFADLMNERAERLGARNSHFVNPHGLTHPEHLSTAYDLAV 185
Query: 173 LSWRIKTDFPQYM-----HYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGF 226
++ + + NTN + GADG+KTG T A+G
Sbjct: 186 ITRAALQNPLFAEIVAAPQKELTYEELGRKVVLYNTNRLLRGGLPGADGVKTGTTGAAGP 245
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQ 283
++ASA + DQ LIAV+L A + R + SA+LL GF N + +
Sbjct: 246 CLIASATRDDQKLIAVVLNASN---RWRESAALLEWGFRNFALARLGRAGEVLVHLPVRG 302
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
VP E + K ++
Sbjct: 303 GKRRAVPVALREELAVVVPRKTGAVPEVQVDLKRPLRAPLRAGEVVG 349
>gi|324016991|gb|EGB86210.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
117-3]
Length = 347
Score = 179 bits (452), Expect = 7e-43, Method: Composition-based stats.
Identities = 85/310 (27%), Positives = 139/310 (44%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAVNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + + K + + N +E + + + K D +
Sbjct: 241 FTTVQILPRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|225018712|ref|ZP_03707904.1| hypothetical protein CLOSTMETH_02662 [Clostridium methylpentosum
DSM 5476]
gi|224948440|gb|EEG29649.1| hypothetical protein CLOSTMETH_02662 [Clostridium methylpentosum
DSM 5476]
Length = 390
Score = 179 bits (452), Expect = 7e-43, Method: Composition-based stats.
Identities = 66/326 (20%), Positives = 124/326 (38%), Gaps = 21/326 (6%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
I + L++ N+G ++ + AS TK+MT+ +
Sbjct: 20 IPASVQAEPGVSAKAAILIEANSGKILYQKNAQQKLPMASTTKIMTSLIALE-----SGN 74
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L T+ +NA + S+ + G +T+ ++++S ND A A+A L + + F
Sbjct: 75 LDEWFTVDENAIKVEGSSMGLQAGDQVTMRTLAYGMLLQSGNDAANAVAVKLAGSAEAFA 134
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY-----MHYFQI 190
+ MN ++ +G++ +HF+ G+ HY+TA DMA L+ +
Sbjct: 135 EKMNERAQQIGMANSHFVTPSGLDNEEHYSTAEDMAKLARTALQNDGFREICSTYQTKLE 194
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
G + N N + + G G+KTGFT SG +V++A + LIAV L A
Sbjct: 195 YGNPPYTRWMTNHNRLLKEYEGTIGVKTGFTKKSGRCLVSAAERDGVRLIAVTLNAPSD- 253
Query: 251 TRNKVSASLLSMGFYNKTDRKK-----INYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
++ GF K I Q VP + +++ +
Sbjct: 254 --WSDHKAMFDYGFSVVQPVKLDCDFSAISIDVVGGTQEKLGVVPLEQPQAGVLSEDVGS 311
Query: 306 YNTQMKEAKDKESHFIDFEKITLLKN 331
++ ++ + ++
Sbjct: 312 IEKRIHLNS---FYYAPIKAGDVVGK 334
>gi|260566296|ref|ZP_05836766.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
gi|260155814|gb|EEW90894.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
Length = 461
Score = 179 bits (452), Expect = 7e-43, Method: Composition-based stats.
Identities = 87/333 (26%), Positives = 151/333 (45%), Gaps = 11/333 (3%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ L+ + ++A+ + ++D NTG + D PAS
Sbjct: 1 MKKAAQVSLLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
LTK+MT Y++F + + T I +S A+ PP+ F+ G ++ ++A +I KS
Sbjct: 61 LTKMMTLYMLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKS 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND+A A+ E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL
Sbjct: 121 ANDVAAAVGEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGM 180
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
++ FP+ YF + +G+ N +G G DG+KTG+T ASG+N+V+S
Sbjct: 181 ALRRHFPREFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLD 240
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
+ L+AV++G +R+ A L+ + +E P +
Sbjct: 241 GRRLVAVVMGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVAS 294
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + + +D + I I
Sbjct: 295 IDLPKAKRAPVPVARIAVEDIINAEIGEGDIDQ 327
>gi|229170862|ref|ZP_04298467.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus MM3]
gi|228612597|gb|EEK69814.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus MM3]
Length = 417
Score = 179 bits (452), Expect = 7e-43, Method: Composition-based stats.
Identities = 73/359 (20%), Positives = 138/359 (38%), Gaps = 33/359 (9%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ SN A + L++ N+G ++ + D + AS+TK+M+ Y+V
Sbjct: 1 MLLPYSNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVHEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+ + K I +S+ A + N + G T+ + + + SAN +A+A
Sbjct: 61 VDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGIYTVKELYEAMAIFSANGATIALA 120
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDM 170
E++ E FV+ MN+ SK LGL F+N+ G+ + +A+D+
Sbjct: 121 EAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDV 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----VGTFLGADGMKTGFTC 222
A L+ + D+P+ + +I E + +K N NW V + G DG+KTG T
Sbjct: 181 ATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTP 240
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+G + + I+V++ R + L GF N ++ Q
Sbjct: 241 EAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEMKQMYKKDSSVKGQ 300
Query: 283 QNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + E + V + + + + + +K L +
Sbjct: 301 ETVRVENAKDKDVAVQTKQAVSLPVPKGSKDVYKTELKEANKGQEAPIKKGAALGQMVI 359
>gi|117624214|ref|YP_853127.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli APEC O1]
gi|301019170|ref|ZP_07183370.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
gi|301050040|ref|ZP_07196954.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
185-1]
gi|301648516|ref|ZP_07248240.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
146-1]
gi|309797269|ref|ZP_07691664.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
145-7]
gi|331658091|ref|ZP_08359053.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli TA206]
gi|115513338|gb|ABJ01413.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6b)
[Escherichia coli APEC O1]
gi|300298224|gb|EFJ54609.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
185-1]
gi|300399363|gb|EFJ82901.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 69-1]
gi|301073419|gb|EFK88225.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
146-1]
gi|308119144|gb|EFO56406.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
145-7]
gi|320198701|gb|EFW73301.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli EC4100B]
gi|323183797|gb|EFZ69188.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli 1357]
gi|323951763|gb|EGB47637.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252]
gi|323972841|gb|EGB68040.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007]
gi|324008953|gb|EGB78172.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 57-2]
gi|326338366|gb|EGD62194.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
1044]
gi|326347113|gb|EGD70846.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli O157:H7 str.
1125]
gi|331056339|gb|EGI28348.1| D-alanyl-D-alanine carboxypeptidase DacD (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 6b)
(PBP-6b) [Escherichia coli TA206]
Length = 347
Score = 179 bits (452), Expect = 7e-43, Method: Composition-based stats.
Identities = 85/310 (27%), Positives = 140/310 (45%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + ++ K + + N +E + + + K D +
Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|260881011|ref|ZP_05403380.2| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
20544]
gi|260850172|gb|EEX70179.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
20544]
Length = 412
Score = 179 bits (452), Expect = 7e-43, Method: Composition-based stats.
Identities = 68/318 (21%), Positives = 125/318 (39%), Gaps = 14/318 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D +G VI E D PAS TK+MT + + +T+S
Sbjct: 67 QNLTARSAVVIDAASGQVIYERNKDERRFPASTTKIMTLILALEHS-----NMDDMVTVS 121
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
NA+ S + G + + + L +++ S ND VA+AE + + KF M +
Sbjct: 122 SNAAGTEGSTLWLEAGEKIRMGDLLYGMMMHSGNDATVAVAEHIAGSVDKFAAMMTAKAH 181
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK----TDFPQYMHYFQIKGLEIKGKK 199
+G T+F NA+G+ + HYTTA D+A ++ + ++
Sbjct: 182 EIGAVNTNFANANGLPREDHYTTAYDLAKITAYGYRVPGFEQIVSTKEIDFDWVKDPSHH 241
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N + + GA+G+KTG+T A+G +V+ A + L+AV+L ++ S L
Sbjct: 242 LRNENQMLWLYRGANGVKTGYTDAAGRCLVSGAKKDGLQLVAVVLDSV---YMWNDSIKL 298
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN--ISEEVCTTQKEIINYNTQMKEAKDKE 317
L GF + + Y + T ++ K + +
Sbjct: 299 LDYGFAHVEPDTIVKEGDTVGYANVAGGTGRKLPLKAAETLTLAKLKGEGEAYKTRIEAD 358
Query: 318 SHFIDFEKITLLKNKITK 335
++ + + +
Sbjct: 359 DLRAPIKEGDTVGRLVVE 376
>gi|160942970|ref|ZP_02090208.1| hypothetical protein FAEPRAM212_00447 [Faecalibacterium prausnitzii
M21/2]
gi|158445664|gb|EDP22667.1| hypothetical protein FAEPRAM212_00447 [Faecalibacterium prausnitzii
M21/2]
Length = 410
Score = 179 bits (452), Expect = 7e-43, Method: Composition-based stats.
Identities = 87/325 (26%), Positives = 137/325 (42%), Gaps = 6/325 (1%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ T L+D +G V+ E D AS+TK+MT + F +
Sbjct: 44 AAQTLTVTPPQLTLPCRAAILIDQTSGTVLYEMNADQTMPIASITKVMTLLLTFEAVHAG 103
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ + T + +S++A S + G TLD LK + V SAND AVA+AE + +E
Sbjct: 104 RLTMDTAVPVSEHAYHMGGSQIWLEPGEQFTLDEMLKAVCVSSANDAAVAVAELVGGSEP 163
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ--YMHYFQI 190
FVQ MN + LG+ T F NA G+ GH +TARD+AI+S I T P+ +
Sbjct: 164 AFVQQMNARAAELGMEHTTFRNACGLDTEGHLSTARDVAIMSRTILTTCPEVLHYTGIWT 223
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
L + NTN + + G G+KTG T +G I ASA + +LIAV+LGA
Sbjct: 224 DTLRGGQTQLVNTNKLLRRYNGITGLKTGTTGGAGVCITASATRDGLNLIAVVLGAPSSK 283
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV----CTTQKEIINY 306
R + + +LL GF + + + + + T +
Sbjct: 284 ERFEAATTLLDYGFAAYRAAPVPLPQERPLQLKVKGSTEETVLLDYAALPATALLPAESA 343
Query: 307 NTQMKEAKDKESHFIDFEKITLLKN 331
+ + ++ + +
Sbjct: 344 GQLTVQLELPDTLEAPVTRGQTVGK 368
>gi|172056057|ref|YP_001812517.1| Serine-type D-Ala-D-Ala carboxypeptidase [Exiguobacterium sibiricum
255-15]
gi|171988578|gb|ACB59500.1| Serine-type D-Ala-D-Ala carboxypeptidase [Exiguobacterium sibiricum
255-15]
Length = 415
Score = 179 bits (452), Expect = 7e-43, Method: Composition-based stats.
Identities = 81/352 (23%), Positives = 145/352 (41%), Gaps = 23/352 (6%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ + ++ + + Y ++D TG ++ D PAS+
Sbjct: 1 MKRLFTLFLSVLILTAGGQPMTGHAETPDIQAESYIMVDAVTGKILLAEQADLALPPASM 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIV 113
TKLMT Y+V +++KK + S+ ++ P + +T T+ +
Sbjct: 61 TKLMTLYLVRQQIEQKKLSWNQTVRPSEKVLKLAKTPGIARLPIRKTTYTIRELYDAAFI 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------HYTTA 167
KSAND AV +AE + TEK+FV+ MN T+ LG+ T + NA G+ + TA
Sbjct: 121 KSANDAAVLLAEVMAGTEKQFVERMNETAVALGMEDTEYANASGLDAVDATLPGTNLMTA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----WAVGTFLGADGMKTGFTCA 223
D+++L R D+P + + + I G+K N+N + G GMKTG T
Sbjct: 181 MDISLLIIRYIQDYPDVLDVTKRSFITINGEKVENSNKMLPRQPYAYSGMRGMKTGTTDL 240
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
+G+ + A +G+ +L++V++ R + LL GF +
Sbjct: 241 AGYCFASVATRGNLTLVSVVMRTTSDKARFAETKKLLDYGFSFFEPLTYYGKGEQIKGVL 300
Query: 284 NLSNEVPNISEEVC------TTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + V T K +T + + E+ + E I +
Sbjct: 301 PIRGAKQSRYDVVTKTALYVTVLKNQAKPHTPVFQFSKAEAPLKEGEIIGTV 352
>gi|92112285|ref|YP_572213.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter
salexigens DSM 3043]
gi|91795375|gb|ABE57514.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chromohalobacter
salexigens DSM 3043]
Length = 413
Score = 179 bits (452), Expect = 8e-43, Method: Composition-based stats.
Identities = 92/262 (35%), Positives = 148/262 (56%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L+++ + ++ ++ A N ++DT G V+ + D P PASLTK+MT Y+
Sbjct: 15 LILLVVFAIALCTLSVAEAAPNPRYASIVIDTENGAVLHADNADAPRYPASLTKMMTLYL 74
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+F +++ L + + +S+ A+ PPS G T+ +++A+ +LIVKSAND+A +A
Sbjct: 75 LFEAIEDDTLSLESRLPVSQYAAAKPPSKMGVTPGETVKVEDAINILIVKSANDVAAVVA 134
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E L +E F M + ++ LG+ T F NA G+ G TTARDMAIL+ R+ DFP Y
Sbjct: 135 EGLAGSESVFAGQMTDKARALGMMDTTFRNASGLPDAGQVTTARDMAILALRLMQDFPGY 194
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
YF +GK+Y N + ++ GADG+KTG+ ASGFN+ SA+ + +++V++
Sbjct: 195 YPYFGKTQFTWQGKRYQGHNRLLDSYAGADGLKTGYIRASGFNVATSAVHDGRRILSVVM 254
Query: 245 GALDRNTRNKVSASLLSMGFYN 266
G +R+ LL GF
Sbjct: 255 GGFTAQSRDAHMRELLDSGFAR 276
>gi|307321507|ref|ZP_07600902.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
AK83]
gi|306892814|gb|EFN23605.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
AK83]
Length = 500
Score = 179 bits (452), Expect = 8e-43, Method: Composition-based stats.
Identities = 91/252 (36%), Positives = 136/252 (53%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
I +A L + F + A N ++D TG V+ D PASLTK+MT Y+ F
Sbjct: 31 IFLAGLIAVLTFSAPAFANSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTLYLTFE 90
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L+ + +TP+ SK AS PPS + G ++T++ A+ L+ +SAND A A+ E L
Sbjct: 91 ALEAGRISKSTPVPFSKKASAEPPSKLGVRAGRSITVEQAILSLVTRSANDAATALGELL 150
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E++F + M N ++ LG++ T + NAHG+ TTARD A L ++ FPQY Y
Sbjct: 151 GGSEQRFARMMTNKARALGMTRTTYRNAHGLPNSEQRTTARDQARLGIALRQHFPQYYDY 210
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + + N N +G G DG+KTG+T ASGFN+V SA +S++AV++G
Sbjct: 211 FSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLDGRSIVAVVMGGT 270
Query: 248 DRNTRNKVSASL 259
R+ L
Sbjct: 271 SGGARDAQMRKL 282
>gi|195970177|ref|NP_385517.2| hypothetical protein SMc00996 [Sinorhizobium meliloti 1021]
gi|307309177|ref|ZP_07588848.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
BL225C]
gi|187904171|emb|CAC45990.2| Penicillin-binding protein [Sinorhizobium meliloti 1021]
gi|306900323|gb|EFN30939.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
BL225C]
Length = 500
Score = 179 bits (452), Expect = 8e-43, Method: Composition-based stats.
Identities = 91/252 (36%), Positives = 136/252 (53%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
I +A L + F + A N ++D TG V+ D PASLTK+MT Y+ F
Sbjct: 31 IFLAGLIAVLTFSAPAFANSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTLYLTFE 90
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L+ + +TP+ SK AS PPS + G ++T++ A+ L+ +SAND A A+ E L
Sbjct: 91 ALEAGRISKSTPVPFSKKASAEPPSKLGVRAGRSITVEQAILSLVTRSANDAATALGELL 150
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E++F + M N ++ LG++ T + NAHG+ TTARD A L ++ FPQY Y
Sbjct: 151 GGSEQRFARMMTNKARALGMTRTTYRNAHGLPNSEQRTTARDQARLGIALRQHFPQYYDY 210
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + + N N +G G DG+KTG+T ASGFN+V SA +S++AV++G
Sbjct: 211 FSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLDGRSIVAVVMGGT 270
Query: 248 DRNTRNKVSASL 259
R+ L
Sbjct: 271 SGGARDAQMRKL 282
>gi|170760218|ref|YP_001787185.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A3 str.
Loch Maree]
gi|169407207|gb|ACA55618.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum A3
str. Loch Maree]
Length = 407
Score = 179 bits (452), Expect = 8e-43, Method: Composition-based stats.
Identities = 92/377 (24%), Positives = 151/377 (40%), Gaps = 42/377 (11%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIA-----------------------ETNKLPYYT 32
M++ F VII + + +F A
Sbjct: 1 MKRKIYYFFSVIITITFIFGVFVTPVSAYDQQNQLKKEEKAEDKDSNKEGDSDVDAKSAL 60
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
L++ TG VI E + PAS+TK+MT + + K LT +TIS+NA + S
Sbjct: 61 LIEPTTGKVIYEKNSHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
G T+++ LK + + S ND AVA+ E L +E+ FV+ MN+ ++ L + T F
Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVKMMNDRAQKLNMKDTSF 180
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTD----FPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
N G+ GH T+A D++I+S + + I N N V
Sbjct: 181 KNCTGLSAEGHKTSAYDISIMSRELLKHKQILKYTGTYMETISEGRKSPIGLVNHNKLVR 240
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
F G DG+KTGFT + + I A+A + ++AVI+GA RNK ++ L++ GF
Sbjct: 241 FFKGCDGLKTGFTDEAKYCISATAKKDGVRMLAVIMGAPTYKIRNKDASKLMNYGFSKFE 300
Query: 269 DRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK------EAKDKES 318
+ + + + EE+ ++ K + + K +
Sbjct: 301 CKTLVKKGDVISKVPLNSKGDKYFMAKSCEELDAIIEKGKKTKITNKCIIDENKKEYKIN 360
Query: 319 HFIDFEKITLLKNKITK 335
+ + N I K
Sbjct: 361 EEVGICEFYSDGNLIGK 377
>gi|83949599|ref|ZP_00958332.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius nubinhibens ISM]
gi|83837498|gb|EAP76794.1| D-alanyl-D-alanine carboxypeptidase [Roseovarius nubinhibens ISM]
Length = 403
Score = 179 bits (452), Expect = 8e-43, Method: Composition-based stats.
Identities = 78/324 (24%), Positives = 150/324 (46%), Gaps = 8/324 (2%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ A + ++D TG V+ D P PAS++KLMT YV F +++ + +T
Sbjct: 22 TQAARAFDTRATAAYVVDVGTGTVLLAKNADQPLPPASMSKLMTLYVTFEAIRDGRLSMT 81
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT--EKKFV 135
+ +S +A+ Y S + G +++++ L+ +IV S ND V +AESL E F
Sbjct: 82 ETLPVSAHAARYGGSTLFLQAGERVSVEDLLRGIIVLSGNDACVVLAESLSPDGTEAGFA 141
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
+ M ++N+G++ + F N++G GH + RD+ +L+ ++ DFP++ F +
Sbjct: 142 RFMTRRAQNMGMTNSAFTNSNGWPAPGHRMSMRDLGLLARKLIEDFPEFYPMFAEEEFLF 201
Query: 196 KG---KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ N N +G +GADG+KTG T +G+ +V SA+Q + +I VI G R
Sbjct: 202 DEKESQNRYNRNPLLGLGIGADGLKTGHTAEAGYGLVGSAVQNGRRVIFVISGLASAEAR 261
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
+ + ++++ F +++ + ++ + V + E T ++
Sbjct: 262 AEEAEAIVNWAFRQFAEQQVVRGGVELARAKVWMGDATTVGLEAAEDVRTLMPAMSAGPL 321
Query: 310 MKEAKDKESHFIDFEKITLLKNKI 333
E ++ L +
Sbjct: 322 KAEVVYTGPIEAPVKQGDKLAELV 345
>gi|182677354|ref|YP_001831500.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182633237|gb|ACB94011.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 538
Score = 179 bits (452), Expect = 8e-43, Method: Composition-based stats.
Identities = 100/255 (39%), Positives = 152/255 (59%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ ++ +T + ++D +G+VI ++ PW PASLTKLMT YV +++
Sbjct: 47 LAIAAVATTTLTDTAQAAPGLVIDLASGNVIYQSEATRPWYPASLTKLMTLYVALQAVRD 106
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ TP+ +S A PPS FK G+ +TL NALK+L+VKSANDIA+ +AE + +
Sbjct: 107 HRIGFDTPLVVSARAHAMPPSKMGFKPGTQVTLGNALKMLMVKSANDIAITVAEGIAGSV 166
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ F + MN + +LGL +HF+N +G+ HY++ARDMA+L+ + FPQY + I
Sbjct: 167 EAFAEDMNAQAADLGLRQSHFVNPNGLHNEQHYSSARDMALLARALYLRFPQYASLYNIG 226
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
L + + N N +G + G DGMKTG+TC +GFNIVASA Q + +I V+LG+ + T
Sbjct: 227 ALRLGNQIIQNHNNLLGRYPGVDGMKTGYTCTAGFNIVASAEQSGRRVIVVVLGSPNVET 286
Query: 252 RNKVSASLLSMGFYN 266
R +A+L F N
Sbjct: 287 RTIKAAALFDRAFSN 301
>gi|114328315|ref|YP_745472.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter
bethesdensis CGDNIH1]
gi|114316489|gb|ABI62549.1| D-alanyl-D-alanine serine-type carboxypeptidase [Granulibacter
bethesdensis CGDNIH1]
Length = 456
Score = 179 bits (452), Expect = 8e-43, Method: Composition-based stats.
Identities = 89/259 (34%), Positives = 143/259 (55%), Gaps = 1/259 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + F + A+ ++D NTG V++ + PD +PASLTK+MT Y++F
Sbjct: 67 FLTTAATGFSTTAYAQIGSERYSSIVVDANTGAVLSASSPDELRHPASLTKMMTLYMLFE 126
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L++++ L + +S +A+ PS G+ +T++ A+ L+ KSAND A A+ E L
Sbjct: 127 ALRDRRVSLDDLVPVSGHAASMSPSKLGLVPGTRLTVEEAILGLVTKSANDAAAAVGEML 186
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E++F Q M ++ LG++ T F NA G+ +TA DMA+L+ + DFP Y
Sbjct: 187 GGSEEQFAQMMTIRARALGMTRTVFRNASGLPDPDQISTAHDMAVLARHLILDFPSEYRY 246
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F PN + + + GADG+KTG+T ASG N+V SA++ D LI V+ GA
Sbjct: 247 FSTPSFVFHRHVIPNHDRMLSIYPGADGLKTGYTNASGLNLVTSALRSDVRLIGVVFGAS 306
Query: 248 DRNTRNKVSASLLSMGFYN 266
++ R+ A+LL+ GF
Sbjct: 307 NKYERDSHMAALLNAGFRQ 325
>gi|300824757|ref|ZP_07104862.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
119-7]
gi|300920250|ref|ZP_07136696.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
115-1]
gi|301018907|ref|ZP_07183137.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
196-1]
gi|299882461|gb|EFI90672.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
196-1]
gi|300412752|gb|EFJ96062.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
115-1]
gi|300522744|gb|EFK43813.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
119-7]
gi|323172598|gb|EFZ58232.1| D-alanyl-D-alanine carboxypeptidase dacD [Escherichia coli LT-68]
Length = 347
Score = 179 bits (452), Expect = 8e-43, Method: Composition-based stats.
Identities = 85/310 (27%), Positives = 140/310 (45%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + ++ K + + N +E + + + K D +
Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|229133395|ref|ZP_04262223.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-ST196]
gi|228650068|gb|EEL06075.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-ST196]
Length = 442
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 73/375 (19%), Positives = 139/375 (37%), Gaps = 42/375 (11%)
Query: 2 RQFLVI-----IAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I + +++ + A + L++ N+G ++ + D
Sbjct: 12 KRFIAIGTVLTLFCSIVVTSGSASAETVPALDVEAGSAILVEANSGKILYQKNADESLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+++ SAN +A+AE + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 132 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPE 191
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N NW
Sbjct: 192 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLISVVIKANSHTARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+K + V + V + + + +
Sbjct: 312 FEVKKVYGKDSVVKGHETVRVANAKDKDIVVQTKQAVSLPMPKGNKDVYKKEFKVSNKEQ 371
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 372 EAPIKKGVTISQMII 386
>gi|303248189|ref|ZP_07334453.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
fructosovorans JJ]
gi|302490453|gb|EFL50362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
fructosovorans JJ]
Length = 359
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 85/243 (34%), Positives = 134/243 (55%), Gaps = 1/243 (0%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ L D NTG ++ E PD PASLTK++T Y++F +++ K + +S
Sbjct: 89 PRLTVKSAMLWDMNTGGLLYEQNPDVQIPPASLTKILTLYIIFDAIRQGKLHPWDVVEVS 148
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTS 142
+ A+ SN + G ++ + +K + V SAND +A+AE L FV MN+T+
Sbjct: 149 QRAASQGGSNMRLRAGESVKVTELIKGIAVASANDACMAMAEYLENGNPDAFVNVMNDTA 208
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ LG++ + FMN +G+ G TTARDM L+ FP+ + ++ ++ N
Sbjct: 209 QRLGMTRSRFMNPNGLPADGQVTTARDMLRLASAYLEQFPKALTIHSMQFFTHNNRQRHN 268
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N +G + GADG+KTGF CASG+NI+A+A +GD LI V+LG+ R + ++ LL
Sbjct: 269 ANALLGRYEGADGLKTGFVCASGYNIIATAKRGDTRLIGVVLGSRSAGVRLRETSKLLDK 328
Query: 263 GFY 265
GF
Sbjct: 329 GFK 331
>gi|300903877|ref|ZP_07121778.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
gi|301307141|ref|ZP_07213170.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
124-1]
gi|300404135|gb|EFJ87673.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 84-1]
gi|300837656|gb|EFK65416.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
124-1]
gi|315253360|gb|EFU33328.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 85-1]
Length = 347
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 85/310 (27%), Positives = 140/310 (45%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + ++ K + + N +E + + + K D +
Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|317486130|ref|ZP_07944975.1| D-alanyl-D-alanine carboxypeptidase [Bilophila wadsworthia 3_1_6]
gi|316922615|gb|EFV43856.1| D-alanyl-D-alanine carboxypeptidase [Bilophila wadsworthia 3_1_6]
Length = 339
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 87/311 (27%), Positives = 155/311 (49%), Gaps = 12/311 (3%)
Query: 5 LVIIAMAMLSNIFPFL-----SIAETNKL-------PYYTLLDTNTGHVIAENYPDHPWN 52
++IA +++ + A + L+D TG ++ PD
Sbjct: 20 FLLIAASLVLAPAAEARNARKAHAAQSTASRQILNVRSAVLMDARTGKILYSQNPDVRIP 79
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PASLTK+M+ V F ++ K L+ I +S++A+ S + G ++L+ L +
Sbjct: 80 PASLTKIMSMMVTFDAIRSGKVKLSDQIRVSRHAARQGGSRMGLRAGERVSLNRLLMGMA 139
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V S ND ++A+AE + + + FV+ MNN ++ +G+S++ F +G+ G YTTARDMA
Sbjct: 140 VSSGNDASMAVAERVGGSGRAFVKMMNNKARQIGMSSSTFKTPNGLPAAGQYTTARDMAR 199
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
L + + P + Y +++ L+ +G N N +G GADG+KTG+ ASG+NI+++
Sbjct: 200 LGYVYLKNNPSALQYHRVRVLKHRGAVTTNKNPLLGACPGADGLKTGWVTASGYNIISTV 259
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+G+ LIAVILGA R+ L+ GF ++T+ + + + N +
Sbjct: 260 RRGNTRLIAVILGADSAGLRSHEVRRLVEAGFKSRTNGITVASALTKYSYPNKATASSVK 319
Query: 293 SEEVCTTQKEI 303
++ +
Sbjct: 320 KHKIRRNKATA 330
>gi|327438154|dbj|BAK14519.1| D-alanyl-D-alanine carboxypeptidase [Solibacillus silvestris
StLB046]
Length = 445
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 76/370 (20%), Positives = 144/370 (38%), Gaps = 40/370 (10%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++I++M ++ + + L+D +TG ++ E + AS+TK+MT Y+
Sbjct: 17 ILILSMLAMTPAKTHAATDLGLTVDAAILIDADTGKILYEQNAETALGIASMTKMMTEYL 76
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIA 120
+ +KE +++ + + N + T T+ + + + SAN
Sbjct: 77 LLDAIKEGSISWDQEYNVTEYTYKVSQNRLLSNVPLRADGTYTIKELYEAMAIYSANAAT 136
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYTT 166
+AIAE++ TEK+F++ M+ ++ LGL F+NA G+ +
Sbjct: 137 IAIAETIAGTEKEFLKLMDKKAEELGLENYKFVNATGLNNADLQGMHPEGTGEKDENVMP 196
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA----VGTFLGADGMK 217
AR +A L++ + D P+ + +I + N N+ V + G DG+K
Sbjct: 197 ARSVAKLAYNLLKDHPEMLETAKIPKKVFREGTSDAISMSNWNFMLPGLVYEYEGVDGLK 256
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVIL------GALDRNTRNKVSASLLSMGFYNKTDRK 271
TG T +G +A +GD LIAV++ G R +A L GF + +
Sbjct: 257 TGTTDFAGHTFTGTAKRGDTRLIAVVMKAVDSNGVGSYKARFDATAKLFDYGFGQFSKVE 316
Query: 272 KI-------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
+ + + + E V K + DK+ E
Sbjct: 317 LLPGNYVFEEQKSIPVIKGKEDSVKIAVKEPVSVMVKTSEKDSYVPTLTLDKKEIEAGVE 376
Query: 325 KITLLKNKIT 334
K ++ +
Sbjct: 377 KDQVVGQAVL 386
>gi|300898616|ref|ZP_07116943.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
198-1]
gi|300956273|ref|ZP_07168579.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
175-1]
gi|405953|gb|AAA16416.1| yeeC [Escherichia coli]
gi|300316896|gb|EFJ66680.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
175-1]
gi|300357712|gb|EFJ73582.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
198-1]
Length = 347
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 85/310 (27%), Positives = 140/310 (45%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + ++ K + + N +E + + + K D +
Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|118444410|ref|YP_878580.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
gi|118134866|gb|ABK61910.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
Length = 410
Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats.
Identities = 92/354 (25%), Positives = 163/354 (46%), Gaps = 25/354 (7%)
Query: 1 MRQFLVIIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR+ L I + +++ + T L+D NTG ++ D P+ PAS
Sbjct: 1 MRKLLTFIWIFIITFSVIVYDTKAIDTPPTVSADGVVLMDKNTGQILYSKNLDSPYPPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK+MTA + L +TI KNA++ S +G +T+ + L L+++S
Sbjct: 61 TTKIMTALLALEKC-----NLDDVVTIGKNATDIDGSKIYIFEGEKLTIRDLLYSLLLQS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND AVA+AE + + ++FV+ MN +K LG T+F+N HG+ H T+ARD+A++
Sbjct: 116 ANDCAVALAEHISGSTQEFVKLMNTRAKELGCKNTNFVNPHGLYDDKHRTSARDLALILR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-----------TFLGADGMKTGFTCAS 224
+ + K PN + + G +G KTG+T S
Sbjct: 176 ELSKHEDFKKIATTQVYVINPTNKEPNKRFIGNKDKLVLKRSKCYYEGCEGGKTGYTIQS 235
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF-YQQ 283
+ VA+A + ++SLIAV+L ++T +L + GF N T K + + Y+
Sbjct: 236 KHSFVATATRDNKSLIAVLLH-DAKHTYWDDVINLFNFGFSNYTREKLYSKNQCLYNYKI 294
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL--KNKITK 335
N ++ +P ++ E ++ + + + + + F+K ++ N + K
Sbjct: 295 NDNSSIPVLATEDFYYLRKNGDKDVPELKVNNAPLNNKFFKKGDIILTGNIVYK 348
>gi|227821091|ref|YP_002825061.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii
NGR234]
gi|227340090|gb|ACP24308.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii
NGR234]
Length = 417
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 88/261 (33%), Positives = 137/261 (52%), Gaps = 4/261 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR + +A + + A ++D +G V++ D PASLTK+M
Sbjct: 1 MRNLQIALAAIVAFVAATASAFA----GSASFVIDARSGRVLSAENADELNYPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L + TP+ +SK A+ PP+ K GS +T++ A+ +I+ SAND A
Sbjct: 57 TLYLTFEALHRGEINWQTPVPMSKEAARKPPTKLGLKPGSAITVEEAVYGMIIHSANDAA 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE L +E F Q M ++ LG++ T F+NA G+ TTARDMA L + D
Sbjct: 117 AAMAEKLGGSEAAFAQMMTAKARRLGMTRTVFVNASGLPASQQVTTARDMAKLGMALLRD 176
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F + +G+ N + + G DG+KTG+T ASGFN+V++ G++ +I
Sbjct: 177 FPREYRLFSAQSFNFRGRVVRGHNKLMYRYDGMDGIKTGYTNASGFNLVSAVRDGNRRVI 236
Query: 241 AVILGALDRNTRNKVSASLLS 261
V+LG +R+ A+LL
Sbjct: 237 GVVLGGRTAKSRDNKMAALLD 257
>gi|309787902|ref|ZP_07682512.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae
1617]
gi|308924301|gb|EFP69798.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella dysenteriae
1617]
Length = 347
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 85/310 (27%), Positives = 139/310 (44%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTSGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN + L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N
Sbjct: 181 WDKTMNIDGLKTGHTSGAGFNLMASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + ++ K + + N +E + + + K D +
Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|260461659|ref|ZP_05809906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
opportunistum WSM2075]
gi|259032729|gb|EEW33993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
opportunistum WSM2075]
Length = 387
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 114/333 (34%), Positives = 180/333 (54%), Gaps = 10/333 (3%)
Query: 2 RQFLVIIAM-AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
R FL + + A++ ++ ++A + D +G ++ W PASL+KLM
Sbjct: 4 RHFLKLFSAGAIMLSVLAGPTLANPV-----VVFDLKSGQILQHQDAFKRWYPASLSKLM 58
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F + + L +PI ++K+++ PPS FK GS M LDNALK+++VKSANDIA
Sbjct: 59 TAYVTFRAIAAGEVQLDSPIKVTKHSAAEPPSKMGFKPGSVMRLDNALKMMLVKSANDIA 118
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+ E++ ++ F + MN + LG++ THF+N +G+ YTTARD+A+L I+ +
Sbjct: 119 MAVGENIGGSQAAFAERMNAEAVRLGMNGTHFVNPNGLYSPDQYTTARDLAVLVMAIRRE 178
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQY +F I+GL + K PN N +G + GADGMKTGF C SGFN++ SA + ++L+
Sbjct: 179 FPQYAPWFSIEGLAVGKKAIPNYNLLIGRYPGADGMKTGFVCPSGFNMIGSATRNGRTLV 238
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AV+LG +R + +A LL GF + + + ++ +EVC +
Sbjct: 239 AVVLGEKSAVSRAEAAARLLDQGF---GAPAAGSATVATLAPYGDTVSPNDMHDEVCKKK 295
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
AKD K+ + +
Sbjct: 296 TPEEQSEAPPALAKDVPKSPYQV-KLDHVPTLV 327
>gi|154245869|ref|YP_001416827.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
autotrophicus Py2]
gi|154159954|gb|ABS67170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
autotrophicus Py2]
Length = 508
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 105/264 (39%), Positives = 155/264 (58%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R + +A A+L + + L++ +TG VI + PW+PAS+TKLMT
Sbjct: 20 RGLCLGLAAAVLGVGLAGSFLVHPAQANPVLLVEADTGRVIEQKEAGRPWHPASVTKLMT 79
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
YV + +K + L TP+T+S A+ PS FK G+ +TLDNA+K+++VKSAND+A
Sbjct: 80 VYVALNAVKNGRLTLDTPLTVSAAAASQQPSKMGFKPGTVVTLDNAMKMVLVKSANDMAW 139
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+ E + + FV MN T+ +LG+S THF N +G+ TTARD+AIL+ I F
Sbjct: 140 VVGEGVAGSMPAFVAEMNATAAHLGMSGTHFENPNGLPDPDQITTARDLAILARAIIYHF 199
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P++ F+I ++I N N + + GADGMKTGF C SG+N+VA+A +G++ LIA
Sbjct: 200 PEHEALFRIPAIKIGKAVLRNYNRLIDRYPGADGMKTGFVCGSGYNLVATATRGNKRLIA 259
Query: 242 VILGALDRNTRNKVSASLLSMGFY 265
VILGA R + +A + GF
Sbjct: 260 VILGARSGTARTEQAALMFEKGFQ 283
>gi|160935972|ref|ZP_02083346.1| hypothetical protein CLOBOL_00869 [Clostridium bolteae ATCC
BAA-613]
gi|158441214|gb|EDP18931.1| hypothetical protein CLOBOL_00869 [Clostridium bolteae ATCC
BAA-613]
Length = 549
Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats.
Identities = 80/308 (25%), Positives = 139/308 (45%), Gaps = 31/308 (10%)
Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++FL + I + + + +FP + A + ++D++TG V+ D P+
Sbjct: 6 MKRFLMLFICLCLCAGLFPITAAAAPEWPSDVSIQADAGIVMDSDTGTVLYGKNMDQPYY 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALK 109
PAS+TK++TA +V L +T S + S++ +G +T+ + L
Sbjct: 66 PASITKILTALIVLEQCD-----LNEMVTFSHDDVYNVEAGSSSAGIDEGDVLTVRDCLY 120
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
L++ SAN+ A A+A + + + F Q MN +++LG + +HF N G+ HYTTA D
Sbjct: 121 ALMLASANESANALACHVSGSREAFAQLMNEKARSLGCTGSHFNNPSGLNDENHYTTAHD 180
Query: 170 MAILSWRIKTDFPQ------------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
MA+++ + G K N N AV + GA K
Sbjct: 181 MALIARAAIQNPEFLTINGTRSYQLAPTKRTPEGGYVANHHKMLNKNEAVY-YPGAFAGK 239
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
TG+T +G +V A + D +LIAV+L + + +L GF N + ++Y
Sbjct: 240 TGYTSLAGNTLVTCARKNDMTLIAVVLN--GHQSHYSDTKALFDFGFRNFQSLRTVDYET 297
Query: 278 KDFYQQNL 285
+ +N
Sbjct: 298 RYKSLEND 305
>gi|328543443|ref|YP_004303552.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum
SL003B-26A1]
gi|326413187|gb|ADZ70250.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum
SL003B-26A1]
Length = 486
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 97/268 (36%), Positives = 148/268 (55%), Gaps = 7/268 (2%)
Query: 1 MRQFLVIIAM------AMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNP 53
MR + + + +L +F L Y ++D TG + D P P
Sbjct: 1 MRSLVSVWTLPRIAKALLLIGLFASLPSIAQANAKYAGIVVDAKTGKTLYAASADEPRYP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
ASLTK+MT YVVF L+ ++ L TP+ +S A+ PPS K GST+++ +A+ LI
Sbjct: 61 ASLTKIMTLYVVFEELEARRLSLDTPLKVSAYAAGQPPSKIGLKPGSTISVKDAILALIT 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
KSAND+AV +AE++ +E +F + M T++ +G++ T F N HG+ G TTARDMA L
Sbjct: 121 KSANDVAVVVAENIGGSEARFAERMTRTARQIGMTRTTFRNPHGLPNSGQRTTARDMAQL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
I+ FP Y YF+ + +G+ Y N N +G G DG+KTGF ASGFN+V S
Sbjct: 181 GRAIQERFPSYYGYFKTRSFAYRGRTYGNHNKLLGHVAGVDGIKTGFIRASGFNLVTSVN 240
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLS 261
+ + ++AV++G +R+ L++
Sbjct: 241 RDGRHVVAVVMGGQTGRSRDAQMVKLIN 268
>gi|239832000|ref|ZP_04680329.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
LMG 3301]
gi|239824267|gb|EEQ95835.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
LMG 3301]
Length = 398
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 89/336 (26%), Positives = 148/336 (44%), Gaps = 11/336 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+ + + + A K P LLD +G V+ + P PASL KLMTA V
Sbjct: 18 ISVAVLVPAICSPAPVDAAFVTKAPQVLLLDDRSGTVLLSKNANVPIPPASLAKLMTAEV 77
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDI 119
VF L++ L T +S+NA S + S+ T+ + L+ +IV++AND
Sbjct: 78 VFEALEKGLTTLDTAYPVSENAWRTGGAPSGTSTMFARIKSSPTVADLLQGMIVQAANDG 137
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ +AE L +E+ F + MN+ ++ LGL+A+ F+N+ G+ G + +D+ L+ I+T
Sbjct: 138 AIVLAEGLAGSERAFAERMNDRARELGLAASRFVNSTGLPAEGQTVSLQDLVRLAQHIRT 197
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+Y Y+ N N + +GADGM TGFT ASGF +V SA Q + L
Sbjct: 198 AHPEYYKYYAQPAFTWNNIMQRNRNPLLRLDVGADGMGTGFTEASGFALVGSAEQNGRRL 257
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI------S 293
+ G R + + LL G D Q + ++
Sbjct: 258 YLAMSGLSSVKEREEEAKRLLQWGMTAFDDVLLYPPNEIIGEAQVFGGALAHVPLKVKDR 317
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
E+ + ++ ++ D +++ +L
Sbjct: 318 VELLLPKNGRDRLKARIVYKGPLDAPVADDQQVGVL 353
>gi|228905810|ref|ZP_04069709.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis IBL 200]
gi|228853818|gb|EEM98576.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis IBL 200]
Length = 424
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/366 (19%), Positives = 144/366 (39%), Gaps = 36/366 (9%)
Query: 5 LVIIAMAML---SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ +A ++ SN A + L++ N+G ++ + D + AS+TK+M+
Sbjct: 1 MITLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSIASMTKMMS 60
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALKLLIVKSAN 117
Y+V + + K I +S+ A + N + G + T+ + + + SAN
Sbjct: 61 EYLVHEAVDKGKLKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSAN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGH 163
+A+AE++ E FV+ MN+ SK LGL F+N+ G+ +
Sbjct: 121 GATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEEN 180
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----VGTFLGADG 215
+A+D+A L+ + D+P+ + +I E + +K N NW V + G DG
Sbjct: 181 KMSAKDVATLAQHLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDG 240
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
+KTG T +G + + I+V++ R + L GF N ++
Sbjct: 241 LKTGSTPEAGDCFTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEVKQMYKK 300
Query: 276 IIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
Q+ + E + + + + + + + +K
Sbjct: 301 GSSVKGQETVRVENAKDKDVEVQTKQAISLPVPKGSKDVYKTELKESSKGQEAPIKKGAA 360
Query: 329 LKNKIT 334
L +
Sbjct: 361 LGQMVI 366
>gi|218680753|ref|ZP_03528650.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894]
Length = 427
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 94/308 (30%), Positives = 147/308 (47%), Gaps = 4/308 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR L + L+ P ++A +LD TG V+A D +PASLTK+M
Sbjct: 1 MRTLLAAVLTVTLAVSAPIAALA----GSASLILDARTGKVLAAENADTLNHPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F LK K TPIT+SK A+ PP+ K G T+T+ A+ +I+KSAND A
Sbjct: 57 TLYLTFEALKRGKIAWDTPITMSKYAAARPPTKLGVKAGGTITVREAVYGMIIKSANDAA 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+ E L +E F + M ++ LG+S T F+NA G+ TTARDM+ L+ + +
Sbjct: 117 SAMGEKLGGSESGFARMMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAVALMKN 176
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+P F +G+ N + + G DG+KTG+T ASGFN+V++ G++ ++
Sbjct: 177 YPNEYRLFSAASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 236
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
V+LG +R+ A LL + + ++ + +V
Sbjct: 237 GVVLGGRTARSRDDKMAGLLDRYLGRASSSGSAKLVASVSGREPVEVASAADDSDVPVPL 296
Query: 301 KEIINYNT 308
+
Sbjct: 297 SAPRPADD 304
>gi|206971703|ref|ZP_03232653.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus AH1134]
gi|206733688|gb|EDZ50860.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus AH1134]
Length = 437
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/367 (19%), Positives = 132/367 (35%), Gaps = 37/367 (10%)
Query: 5 LVIIAMAMLSN---IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ I +M+ A + L++ N+G ++ E D AS+TK+M+
Sbjct: 15 VLTIFCSMVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMS 74
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSAN 117
Y+V + + K + IS+ A + S + T+ + + + SAN
Sbjct: 75 EYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSAN 134
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------H 163
+A+ E + E FV+ MN+ SK G+ F+N+ G+ +
Sbjct: 135 GATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKN 194
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGAD 214
+ARD AIL+ R+ DFPQ ++ +I + N NW + + G D
Sbjct: 195 KMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVD 254
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G+KTG T +G + + LI+V++ A R + L GF N +
Sbjct: 255 GLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNVYG 314
Query: 275 YIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ V + V + + + +K
Sbjct: 315 KDSVIKGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNTEQEAPIKKGV 374
Query: 328 LLKNKIT 334
+ I
Sbjct: 375 TISKMII 381
>gi|262277220|ref|ZP_06055013.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HIMB114]
gi|262224323|gb|EEY74782.1| D-alanyl-D-alanine carboxypeptidase [alpha proteobacterium HIMB114]
Length = 378
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 95/343 (27%), Positives = 164/343 (47%), Gaps = 19/343 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + II +S S A L+D +G V+ E + +PAS+TK+M
Sbjct: 1 MIKKIFIICFLFISV----KSSALETSAKQAYLIDVLSGEVLFEKNKEQKISPASITKIM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSAN 117
TA V F +K+ L +SKNA + ++++N LK +I+ S N
Sbjct: 57 TAIVAFDLIKKGDLKLEEKFKVSKNAWRMSSKGFSSMFIMPNDRVSVENLLKGIIIVSGN 116
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D +A+AE + TE++FV MNN ++ +GLS T F N+ G+ +Y+T D++ +S +
Sbjct: 117 DACIALAEGIAGTEEEFVNMMNNMAEKIGLSNTRFANSSGIYDGNNYSTVEDISKMSIYL 176
Query: 178 KTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+FP Y+ K N N + +G DG+KTG+ SG+++ A+
Sbjct: 177 INNFPNLYKYYSEKKFTWDRTGGAPITQGNRNPILYKDMGGDGIKTGYLNNSGYSLAATI 236
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ D+ +++V+ G +N R++ + LLS K IN I K++ + N+
Sbjct: 237 KKNDRRILSVVSGTDSKNARSRETVRLLSYAENRFDLLK-INKIDKNYKIKTW-----NL 290
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ + + Y T K K+K ID EK +L +++ K
Sbjct: 291 KQKTVQLELKNNIYLTIPKRKKNKLKIEIDHEK-DILSSELKK 332
>gi|312109161|ref|YP_003987477.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
sp. Y4.1MC1]
gi|311214262|gb|ADP72866.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
sp. Y4.1MC1]
Length = 450
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/369 (19%), Positives = 134/369 (36%), Gaps = 39/369 (10%)
Query: 7 IIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ + + PF + + L+D NTG ++ + D AS+TK+MT
Sbjct: 12 FLMIGLCFYFLPFHAAKAAVDPLNIEADAAILVDANTGRILYQKNIDTVLGIASMTKMMT 71
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
Y++ +KEK+ T S + ++ L A A
Sbjct: 72 EYLLLEAVKEKRVKWDQQYTPSDYVYRLSQDRALSNVPLRKDGKYTIRELYEAMAIYSAN 131
Query: 122 AIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------H 163
A ++ + +E+ FV+ MN + LGL F+N+ G+ +
Sbjct: 132 AATVAIAEIVGGSEQNFVKMMNEKANQLGLKGYKFVNSTGLSNEDLKGFHPEGTNQSEEN 191
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGAD 214
+AR +A L++ + ++P+ + + K N NW V + G D
Sbjct: 192 VMSARSVATLAYHLLKEYPEVLETASTPRKIFREGTDDQIKMDNWNWMLPGLVHAYEGVD 251
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-----NTRNKVSASLLSMGFYNKTD 269
G+KTG+T +G+ +A + I V++ A R + + LL GF N +
Sbjct: 252 GLKTGYTEFAGYCFTGTAERNGVRFITVVMNAKSNGKSTIEARFEQTRKLLDYGFSNYSM 311
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+K + + + L T K + +E + + D +K+T
Sbjct: 312 KKLYSKGYELKGKSVLPVVKGKEKSVAIATDKPLSLVVKNGEEKNYRPVYVFDKKKLTAD 371
Query: 330 KNKI--TKK 336
KK
Sbjct: 372 GELTAPVKK 380
>gi|83310217|ref|YP_420481.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
AMB-1]
gi|82945058|dbj|BAE49922.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
AMB-1]
Length = 435
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 83/262 (31%), Positives = 132/262 (50%), Gaps = 1/262 (0%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L +IA+A+ I ++ ++D G V+ PD PASLTK+MT ++
Sbjct: 12 LRLIAVALGVAIIA-VAQPAEAGRYASIVIDAENGSVLHAANPDTRSYPASLTKVMTLFL 70
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+F L + L + T S +A+ PS + G +++++ + L+ KSAND AV A
Sbjct: 71 LFDELDSGRIRLDSKFTTSAHAAAQSPSKLGLEPGEKISVESLILALVTKSANDAAVVAA 130
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + TE +F M + LG+ T + NA G+ G +T RD A L+ + P Y
Sbjct: 131 EGVGGTETRFAHMMTQKAHALGMRNTVYRNASGLPDTGQVSTVRDQATLARALIRSHPGY 190
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
YF + G+ N + + GADG+KTG+ ASGFN+++SA +GD+ +I V+
Sbjct: 191 YKYFSTRQFVYDGQPINTHNRLMLRYQGADGIKTGYIHASGFNLISSAKRGDKRIIGVVF 250
Query: 245 GALDRNTRNKVSASLLSMGFYN 266
G ++R+ LL GF
Sbjct: 251 GGSTASSRDNHMGQLLDKGFAK 272
>gi|307546895|ref|YP_003899374.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM
2581]
gi|307218919|emb|CBV44189.1| serine-type D-Ala-D-Ala carboxypeptidase [Halomonas elongata DSM
2581]
Length = 494
Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats.
Identities = 91/235 (38%), Positives = 141/235 (60%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++DT+T ++ D P PASLTK+MT Y++F L + L + +S ASE
Sbjct: 48 AGIVVDTDTSEILYAENADAPRYPASLTKMMTLYMLFERLDQGGMTLGQRLPVSATASEM 107
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
P + K G ++ ++ A++ LIV+SAND+AV +AE+L +E F + M + + LG+S
Sbjct: 108 PATKLWLKPGDSIPVEKAIQALIVRSANDVAVVVAEALGGSESHFARMMTSRAHELGMSN 167
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T F NA G+ TTARDMA+L+ R+ DFPQY YF + +GK N + +
Sbjct: 168 TTFRNASGLPDDRQVTTARDMALLARRLMLDFPQYYPYFSLDRFTWRGKTLTGHNNLLDS 227
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
+ GADG+KTGF ASGFN+ SA +G + +++V++G ++R++ A+LL GF
Sbjct: 228 YPGADGLKTGFIRASGFNVATSAKRGGRRILSVVMGGYTASSRDEHMANLLDRGF 282
>gi|241206582|ref|YP_002977678.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240860472|gb|ACS58139.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 377
Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats.
Identities = 116/317 (36%), Positives = 180/317 (56%), Gaps = 3/317 (0%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK-LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
R F + ++ +S + + + L+D TG V+ W PASLTKLM
Sbjct: 7 RLFAALRPLSFVSAATAVFLGSFSLAQANPHILVDVQTGRVLEHEEAFRKWYPASLTKLM 66
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y VF ++ + L TPI +SK A+ P + FK G +TLD+ALK+L+VKSANDIA
Sbjct: 67 TVYTVFDAIRAGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIA 126
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ T++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ D
Sbjct: 127 VAVAEAIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRD 186
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQY YF ++G + P+ N +G F GADGMKTGF CASGFN + SA + ++L+
Sbjct: 187 FPQYAGYFSLEGFTNGQQNVPSLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLV 246
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
+V+LG R +A+LL GF + ++ + +V +IS ++C+ +
Sbjct: 247 SVVLGTDSLAARADATANLLQKGFTTQPASNDTLGSLRPYGVGQD--QVTDISADICSAK 304
Query: 301 KEIINYNTQMKEAKDKE 317
+ T+ + + K
Sbjct: 305 GAKVRSETRDEVGRMKV 321
>gi|163940275|ref|YP_001645159.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
gi|163862472|gb|ABY43531.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
Length = 434
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 76/378 (20%), Positives = 141/378 (37%), Gaps = 43/378 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ + D
Sbjct: 4 KRFITIVTVLTLFCSMAVPFGRASAETVPAIDVEAGSAILVEANSGKILYQKNADESLAI 63
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 64 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYE 123
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------- 158
+++ SAN +A+AE + E FV+ MN+ SK + F+N+ G+
Sbjct: 124 AMVIYSANGATIALAEEIAGKEVNFVKMMNDKSKEFEMENYKFVNSTGLTNHDLKGHHPE 183
Query: 159 ---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N NW
Sbjct: 184 GTTPDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGL 243
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 244 IKQYEGVDGLKTGTTPEAGDCFTGTVEKNGMRLISVVIKANSHTARFDETKKLYDYGFAN 303
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+K + V + V + + + +
Sbjct: 304 FEVKKVYGKDSVVKGHETVRVANAKDKDVVVQTKQAVSLPMPKGNKDVYKKEFKVSNKEQ 363
Query: 320 FIDFEK-ITLLKNKITKK 336
+K +T+ K I+ K
Sbjct: 364 EAPIKKDVTISKMTISPK 381
>gi|228898767|ref|ZP_04063051.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis IBL 4222]
gi|228860859|gb|EEN05235.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis IBL 4222]
Length = 415
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 72/354 (20%), Positives = 138/354 (38%), Gaps = 33/354 (9%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN A + L++ N+G ++ + D + AS+TK+M+ Y+V + + K
Sbjct: 4 SNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSIASMTKMMSEYLVHEAVDKGK 63
Query: 74 AMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
I +S+ A + N + G + T+ + + + SAN +A+AE++
Sbjct: 64 LKWDQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELYEAMAIFSANGATIALAEAIAG 123
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSW 175
E FV+ MN+ SK LGL F+N+ G+ + +A+D+A L+
Sbjct: 124 KEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHPEGTTADEENKMSAKDVATLAQ 183
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWA----VGTFLGADGMKTGFTCASGFN 227
+ D+P+ + +I E + +K N NW V + G DG+KTG T +G
Sbjct: 184 HLIKDYPKVLDTAKIPKKEFRPEKEKFAMSNWNWMLKGLVKEYDGVDGLKTGSTPEAGDC 243
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + I+V++ R + L GF N ++ Q+ +
Sbjct: 244 FTGTVERNGMRFISVVIKTSSHTARFDETKKLYDYGFANFEVKQMYKKGSLVKGQETVRV 303
Query: 288 EVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
E + + + + + + + +K L +
Sbjct: 304 ENAKDKDVAVQTKQAISLPVPKGSKDVYKTELKESSKGQEAPIKKGAALGQMVI 357
>gi|300930715|ref|ZP_07146093.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
187-1]
gi|301330462|ref|ZP_07223080.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
gi|300461436|gb|EFK24929.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
187-1]
gi|300843583|gb|EFK71343.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 78-1]
gi|332092389|gb|EGI97462.1| D-alanyl-D-alanine carboxypeptidase dacD [Shigella boydii 5216-82]
Length = 347
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 83/310 (26%), Positives = 139/310 (44%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEAKKLLRWGQQN 240
Query: 267 KTDRKKI----NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + + + + + N +E + + + K + +
Sbjct: 241 FTTVQILHRRKKVGTERIWYGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLNGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|229053860|ref|ZP_04195297.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH603]
gi|228721470|gb|EEL72987.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH603]
Length = 418
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/355 (19%), Positives = 133/355 (37%), Gaps = 34/355 (9%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN A + L++ N+G ++ + D + AS+TK+M+ Y+V + + K
Sbjct: 6 SNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAIAKGK 65
Query: 74 AMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ +S+ A S + T+ + + + SAN +A+AE++
Sbjct: 66 LKWDQKVKVSEYAYNISQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAG 125
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMAILSW 175
E FV+ MN+ SK GL F+N+ G+ + +ARD+AIL+
Sbjct: 126 KEVDFVKMMNDKSKEFGLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQ 185
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA----VGTFLGADGMKTGFTCASGF 226
R+ DFP+ + +I + PN NW + + G DG+KTG T +G
Sbjct: 186 RLIQDFPKTLDIAKISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAGD 245
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ--- 283
+ + I+V++ R + L GF + +K ++
Sbjct: 246 CFTGTIERNGMRFISVVIKTKSHTARFDETKKLYDYGFASFEMKKMYEKGSSVKGKETVR 305
Query: 284 ----NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + V + + + + + +K L +
Sbjct: 306 VENAKDKDVAAQTKQAVSLPVPKGSKDVYKTEFKEGNKGQEAPMKKGVTLGQMVV 360
>gi|258541378|ref|YP_003186811.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-01]
gi|256632456|dbj|BAH98431.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-01]
gi|256635513|dbj|BAI01482.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-03]
gi|256638568|dbj|BAI04530.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-07]
gi|256641622|dbj|BAI07577.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-22]
gi|256644677|dbj|BAI10625.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-26]
gi|256647732|dbj|BAI13673.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-32]
gi|256650785|dbj|BAI16719.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256653776|dbj|BAI19703.1| D-alanyl-D-alanine serine-type carboxypeptidase [Acetobacter
pasteurianus IFO 3283-12]
Length = 382
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 93/267 (34%), Positives = 146/267 (54%), Gaps = 2/267 (0%)
Query: 1 MRQFLVIIA-MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+R+++ ++A +A+ + + A+ ++D TG V++++ PD PASLTKL
Sbjct: 23 LRKWVGLLAGLAVGTTATYGKAHAQYAGQLSSIVVDARTGAVLSQDDPDLRRYPASLTKL 82
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT Y+ F+ L+ L + +S +AS PS GS +T++ A+ L+ KSAND
Sbjct: 83 MTLYMTFNALRAGAISLDQAVPVSIHASTMEPSKLGLVPGSHLTVEQAILALVTKSANDA 142
Query: 120 AVAIAESLCKTEK-KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A A+ E + + +F M + LG+S T F NA G+ TTARD++ L R+
Sbjct: 143 ACALGELIGGGSEPQFAAMMTQQAHYLGMSNTTFRNASGLPDPDQMTTARDLSTLGRRLI 202
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+DFP+Y HYF + PN N + + GADGMKTG+T +G N+V SAI+ +
Sbjct: 203 SDFPEYYHYFSTPYFSFHRRIIPNHNPMLKVYAGADGMKTGYTQEAGRNLVTSAIRDNVR 262
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFY 265
L+ V++GA R+ V A+ L GF
Sbjct: 263 LVGVVMGASSNTQRSLVMANQLDRGFD 289
>gi|254474184|ref|ZP_05087575.1| penicillin-binding protein [Pseudovibrio sp. JE062]
gi|211956714|gb|EEA91923.1| penicillin-binding protein [Pseudovibrio sp. JE062]
Length = 485
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 86/253 (33%), Positives = 139/253 (54%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+A+ I S+AE N ++D TG V+ N + PAS TK+MT YV+F
Sbjct: 22 IIAVSVAIATAPSVAEANSKYAGIVVDAKTGKVLYANNANARRYPASTTKIMTLYVLFEE 81
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
L+ + L T + +S+ A+ PP+ + G ++ + +A+ LI KSAND + IAE +
Sbjct: 82 LEAGRVSLNTKMKVSRYAAGRPPTKLGLRVGGSLRVKDAIYALITKSANDASTVIAEHIS 141
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+EK F + M T++ +G+ T F N HG+ TTA D+A+L I+ FP+Y YF
Sbjct: 142 GSEKAFGRRMTQTARAIGMRNTTFRNPHGLPNSKQVTTAADLALLGRAIQDRFPKYYKYF 201
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ G++ N N +G G DG+KTG+T ASGFN+V + + ++ ++AV+LG
Sbjct: 202 NTRSYTYAGRRMGNHNKLLGRVRGVDGIKTGYTNASGFNLVTNVKRDNRQIVAVVLGGRT 261
Query: 249 RNTRNKVSASLLS 261
+R+ L++
Sbjct: 262 GKSRDAQMVKLIN 274
>gi|311070657|ref|YP_003975580.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
gi|310871174|gb|ADP34649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
Length = 441
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 77/372 (20%), Positives = 141/372 (37%), Gaps = 39/372 (10%)
Query: 1 MRQFLVIIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M F V+ + S +++ ++G ++ D AS+T
Sbjct: 10 MMSFFVLTLIVTCLAPMSRAKAASDPIDVNASAAIMIEASSGKILYSKNADKRLPIASMT 69
Query: 58 KLMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
K+MT Y++ + E K + + + + SN +K T+ + +
Sbjct: 70 KMMTEYLLLEAIDEGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQATAI 129
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY--------- 164
SAN A+A+AE + +E KFV MN +K LGL+ F+NA G+ +
Sbjct: 130 YSANAAAIALAEVMAGSETKFVDKMNAKAKELGLTNFKFVNATGLENKDLHGKQPEGTSV 189
Query: 165 -----TTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAVG----TF 210
+A+DMAIL+ R+ TD+P+ + I + + PN N+ + +
Sbjct: 190 DEESEVSAKDMAILADRLITDYPEILDTASIAKTKFREGTDDEMDMPNWNFMLKGLVSEY 249
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFYNKT 268
G DG+KTG T ++G ++A + +I V+L A R + +L+ F N +
Sbjct: 250 KGVDGLKTGSTDSAGSCFTSTAERNGMRVITVVLNAKGNIHTGRFDETKKMLNYAFDNFS 309
Query: 269 DRKKINYIIKD-------FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
++ + + + K N + K DK+
Sbjct: 310 MKEIYAEGKQVKGHKTISVEKGKDKEVGIVTKKAFSIPVKNGDEKNYKAKVTLDKDKLDA 369
Query: 322 DFEKITLLKNKI 333
+K +
Sbjct: 370 PVKKGAKVGKLT 381
>gi|229131021|ref|ZP_04259937.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-ST196]
gi|228652433|gb|EEL08354.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-ST196]
Length = 418
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 71/355 (20%), Positives = 134/355 (37%), Gaps = 34/355 (9%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN A + L++ N+G ++ + D + AS+TK+M+ Y+V + + K
Sbjct: 6 SNASAETGAALNIEAGAAILVEANSGKILYQKNADELLSIASMTKMMSEYLVNEAIAKGK 65
Query: 74 AMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ +S+ A S + T+ + + + SAN +A+AE++
Sbjct: 66 LKWDQKVKVSEYAYNISQDRSLSNVPLRNGESYTVKELYEAMAIYSANGATIALAEAVAG 125
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMAILSW 175
E FV+ MN+ SK GL F+N+ G+ + +ARD+AIL+
Sbjct: 126 KEVDFVKMMNDKSKEFGLKNYKFVNSTGLTNKDLKGHHPEGTTPDEENKMSARDVAILAQ 185
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA----VGTFLGADGMKTGFTCASGF 226
R+ DFP+ + +I + PN NW + + G DG+KTG T +G
Sbjct: 186 RLIQDFPKTLDIAKISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDGLKTGSTPEAGD 245
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ + I+V++ R + L GF + +K ++ +
Sbjct: 246 CFTGTIERNGMRFISVVIKTKSHTARFDETKKLYDYGFASFEMKKMYEKGSSVKGRETVR 305
Query: 287 NEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
E + V + + + + + +K L +
Sbjct: 306 VENAKDKDVAVQTKQAVSLPVPKGSKDVYKTEFKEGNKGQEAPMKKGVTLGQMVV 360
>gi|306841894|ref|ZP_07474574.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2]
gi|306288024|gb|EFM59426.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2]
Length = 472
Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats.
Identities = 87/325 (26%), Positives = 148/325 (45%), Gaps = 6/325 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ + ++A+ + ++D NTG + D PASLTK+MT Y
Sbjct: 20 LLLTAVTGYSTASSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLY 79
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++F + + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 MLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAV 139
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+
Sbjct: 140 GEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPR 199
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
YF E +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV+
Sbjct: 200 EFAYFSRSSFEFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVV 259
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+G +R+ A L+ + +E P + + + +
Sbjct: 260 MGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKR 313
Query: 304 INYNTQMKEAKDKESHFIDFEKITL 328
+D + I I
Sbjct: 314 APVPVARIAVEDIINAEIGEGDIDQ 338
>gi|304406838|ref|ZP_07388493.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
curdlanolyticus YK9]
gi|304344371|gb|EFM10210.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
curdlanolyticus YK9]
Length = 415
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 76/303 (25%), Positives = 118/303 (38%), Gaps = 10/303 (3%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+A L+D TG ++ E PAS+TK++TA V
Sbjct: 29 LASAGEQTALARKPPELLAESAILMDRRTGTILYEKNASQRMYPASITKIVTAIVALESA 88
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ +T+SK A + ++G M L L ++V S ND A AIAE +
Sbjct: 89 -----NVEDVVTVSKEARGEEGTRVYLEEGEQMKLWQLLLGMMVNSGNDAATAIAEHVDG 143
Query: 130 TEKKFVQHMNNTSKN-LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+++KF +HMN + + F N G+ HYTTA DMA ++ ++
Sbjct: 144 SKEKFAEHMNAWIREKANAYDSQFRNPSGLPDPEHYTTAEDMAKITQYAMSNEKFRELVG 203
Query: 189 QIKGLEIKGKKYP---NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
K + N N +GT+ GA G+K G+T +G +VASA + LI VIL
Sbjct: 204 TKKVIWNGQTWQTVLVNHNKLLGTYDGATGVKNGYTTLAGSTLVASAERNGMELIGVILK 263
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
A N S+L GF + + + + E + T +
Sbjct: 264 APSSNQMYADMRSILDYGFAAFEPKLLFDEN-ETYEMDGAPAVAYTADEAIWTVVPKGEK 322
Query: 306 YNT 308
Sbjct: 323 PKV 325
>gi|300947320|ref|ZP_07161521.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
116-1]
gi|300453072|gb|EFK16692.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
116-1]
Length = 347
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 86/310 (27%), Positives = 140/310 (45%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KDTHFETVHGLDALGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAVI+GA R + + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVIMGADSAKGREEEARKLLRWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + ++ K + + N +E + + + K D +
Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|153953878|ref|YP_001394643.1| DacA2 [Clostridium kluyveri DSM 555]
gi|219854493|ref|YP_002471615.1| hypothetical protein CKR_1150 [Clostridium kluyveri NBRC 12016]
gi|146346759|gb|EDK33295.1| DacA2 [Clostridium kluyveri DSM 555]
gi|219568217|dbj|BAH06201.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 403
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 85/347 (24%), Positives = 152/347 (43%), Gaps = 24/347 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAET-------------NKLPYYTLLDTNTGHVIAENYPDHP 50
++ + + + S + ++ E L++ +G +I E +
Sbjct: 15 LIMFLIIGLGSTVVKAKALTEEDKQEIKSIKADLSINAKSALLMEPTSGKIIFEKNANEK 74
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PAS+TK+M + L K L+ +T+S+NA + S+ G ++++ +K
Sbjct: 75 LEPASVTKIMDMLLTMEALDSGKISLSDKVTVSENAKKMGGSSMLLDTGEVRSVEDLIKG 134
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ + S ND AVA+AE L TE+ FVQ MN +K LG++ T F N G+ Q GHYTTA D+
Sbjct: 135 IGIASGNDAAVAMAEYLGGTEEAFVQLMNKRAKELGMNNTQFKNCTGLSQEGHYTTAYDI 194
Query: 171 AILSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A++S + + I + N N V F G DG+KTGFT ++ +
Sbjct: 195 ALMSSELLKHPNILKYTGTYMETISEGRKSPIELVNHNKLVRFFKGCDGLKTGFTDSAKY 254
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
I A++++ ++AV++G+ RNK ++ L++ GF T +
Sbjct: 255 CISATSVRDGARMLAVVMGSPTYKERNKEASMLMNYGFSKYTSINVLKKGDDIEKVNLNK 314
Query: 287 N------EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +V + + + K+K + EK+
Sbjct: 315 GGDKFFMAKSSSDLKVTVEKGKENKITCRCVINKNKRQYK-KGEKVG 360
>gi|62290085|ref|YP_221878.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
9-941]
gi|82700009|ref|YP_414583.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar
Abortus 2308]
gi|148560388|ref|YP_001259090.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
gi|163843436|ref|YP_001627840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
gi|225627640|ref|ZP_03785677.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
gi|237815590|ref|ZP_04594587.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
gi|254697529|ref|ZP_05159357.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
str. 86/8/59]
gi|254701913|ref|ZP_05163741.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
513]
gi|254706648|ref|ZP_05168476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M163/99/10]
gi|254710245|ref|ZP_05172056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
B2/94]
gi|254714241|ref|ZP_05176052.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
gi|254717677|ref|ZP_05179488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
gi|256031739|ref|ZP_05445353.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M292/94/1]
gi|256061252|ref|ZP_05451403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
gi|256159905|ref|ZP_05457627.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
gi|256255139|ref|ZP_05460675.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
gi|260168872|ref|ZP_05755683.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. F5/99]
gi|260546634|ref|ZP_05822373.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
gi|260761956|ref|ZP_05874299.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
str. 86/8/59]
gi|261219519|ref|ZP_05933800.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
gi|261222337|ref|ZP_05936618.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
gi|261314108|ref|ZP_05953305.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M163/99/10]
gi|261317805|ref|ZP_05957002.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
B2/94]
gi|261322014|ref|ZP_05961211.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
gi|265988836|ref|ZP_06101393.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M292/94/1]
gi|294852510|ref|ZP_06793183.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
gi|62196217|gb|AAX74517.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
9-941]
gi|82616110|emb|CAJ11149.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
melitensis biovar Abortus 2308]
gi|148371645|gb|ABQ61624.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
gi|163674159|gb|ABY38270.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
gi|225617645|gb|EEH14690.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
gi|237788888|gb|EEP63099.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
gi|260095684|gb|EEW79561.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
gi|260672388|gb|EEX59209.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
str. 86/8/59]
gi|260920921|gb|EEX87574.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
gi|260924608|gb|EEX91176.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
gi|261294704|gb|EEX98200.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
gi|261297028|gb|EEY00525.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
B2/94]
gi|261303134|gb|EEY06631.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M163/99/10]
gi|264661033|gb|EEZ31294.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M292/94/1]
gi|294821099|gb|EFG38098.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
Length = 472
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 6/325 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ + ++A+ + ++D NTG + D PASLTK+MT Y
Sbjct: 20 LLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLY 79
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++F + + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 MLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAV 139
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+
Sbjct: 140 GEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPR 199
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
YF + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV+
Sbjct: 200 EFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVV 259
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+G +R+ A L+ + +E P + + + +
Sbjct: 260 MGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKR 313
Query: 304 INYNTQMKEAKDKESHFIDFEKITL 328
+D + I I
Sbjct: 314 APVPVARIAVEDIINAEIGEGDIDQ 338
>gi|323139480|ref|ZP_08074528.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylocystis
sp. ATCC 49242]
gi|322395282|gb|EFX97835.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylocystis
sp. ATCC 49242]
Length = 530
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 109/324 (33%), Positives = 168/324 (51%), Gaps = 12/324 (3%)
Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ +A+ + + + + A + ++D +G V+ ++ W PASLTK
Sbjct: 4 MKRLRRFGALAIFLAAVVTAGRAGATPS-----LVIDVASGQVLEQDQATASWYPASLTK 58
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMTAYV ++ + + TP+ +S A PS F+ GS +TL NAL +L+VKSAND
Sbjct: 59 LMTAYVALDAVRAGRISMDTPLMMSPRACRMAPSKMGFRAGSEVTLHNALIMLMVKSAND 118
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
IAVAIAE + + + F MN S NLG++ + ++N +G+ T+ARD+AIL +
Sbjct: 119 IAVAIAEGVSGSVEAFADEMNRASANLGMTQSQWVNPNGLPDSRQVTSARDLAILGRALY 178
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FP+Y + F I ++I G+ +P N +G + GADGMKTGFTC +GFN+VASA G Q
Sbjct: 179 LQFPEYAYLFNIGAMQIGGRVHPTHNGLLGRYPGADGMKTGFTCPAGFNLVASATHGGQR 238
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
LIAV+LGA R +A+LL F + + + P++ ++VC
Sbjct: 239 LIAVVLGAPSAAARTAKAAALLDRAFQTGSPIGTLASLPSV-----GPTAAPDMRDKVCR 293
Query: 299 TQKEIINYNTQMKEAKDKESHFID 322
+ E
Sbjct: 294 NRGAATAEFMAEVEDMSIPVGSAP 317
>gi|254730424|ref|ZP_05189002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
str. 292]
gi|260758130|ref|ZP_05870478.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
str. 292]
gi|260668448|gb|EEX55388.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
str. 292]
Length = 472
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 6/325 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ + ++A+ + ++D NTG + D PASLTK+MT Y
Sbjct: 20 LLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLY 79
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++F + + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 MLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAV 139
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+
Sbjct: 140 GEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPR 199
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
YF + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV+
Sbjct: 200 EFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVV 259
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+G +R+ A L+ + +E P + + + +
Sbjct: 260 MGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKR 313
Query: 304 INYNTQMKEAKDKESHFIDFEKITL 328
+D + I I
Sbjct: 314 APVPVARIAVEDIINAEIGEGDIDQ 338
>gi|254693878|ref|ZP_05155706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
str. Tulya]
gi|261214165|ref|ZP_05928446.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
str. Tulya]
gi|260915772|gb|EEX82633.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
str. Tulya]
Length = 472
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 6/325 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ + ++A+ + ++D NTG + D PASLTK+MT Y
Sbjct: 20 LLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLY 79
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++F + + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 MLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAV 139
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+
Sbjct: 140 GEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPR 199
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
YF + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV+
Sbjct: 200 EFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVV 259
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+G +R+ A L+ + +E P + + + +
Sbjct: 260 MGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKR 313
Query: 304 INYNTQMKEAKDKESHFIDFEKITL 328
+D + I I
Sbjct: 314 APVPVARIAVEDIINAEIGEGDIDQ 338
>gi|225390069|ref|ZP_03759793.1| hypothetical protein CLOSTASPAR_03819 [Clostridium asparagiforme
DSM 15981]
gi|225043871|gb|EEG54117.1| hypothetical protein CLOSTASPAR_03819 [Clostridium asparagiforme
DSM 15981]
Length = 382
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 84/320 (26%), Positives = 139/320 (43%), Gaps = 14/320 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
P L++ +TG VI E D +PAS+TK+MT ++F L+ K +T + S A
Sbjct: 17 PSALLMEASTGQVIYEKDADQKRSPASITKIMTLILIFDALESGKIKMTDEVVTSAYAKS 76
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S ++G T++ +K +I+ S ND +V +AE + TE++FV+ MN + LG++
Sbjct: 77 MGGSQVFLEEGEKQTVETLIKCIIIASGNDASVTMAEYIGGTEQEFVRMMNERAAGLGMT 136
Query: 149 ATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-------- 199
THF++ G+ H TTARD+AI+S + +PQ +Y I I
Sbjct: 137 NTHFVDCCGLTDSPDHVTTARDIAIMSRELINRYPQIHNYSTIWMENITHVTKQGTKEFG 196
Query: 200 YPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
NTN + T G+KTG T + + + A+A + LIAV++ A D R +
Sbjct: 197 LSNTNKLLKMATNFTVTGLKTGSTSLAKYCLSATAEKDGVRLIAVVMAAPDFKARFADAQ 256
Query: 258 SLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
++L+ G+ N D++ + + + K
Sbjct: 257 TMLNYGYANCRLYEDKEMLPLPQMAVTGGVADQVPLYYEGSFSYLSLSGEDLDQVEKNLV 316
Query: 315 DKESHFIDFEKITLLKNKIT 334
+ES K
Sbjct: 317 LEESLPAPVTKGQAAGVITY 336
>gi|254719233|ref|ZP_05181044.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
gi|265984229|ref|ZP_06096964.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
gi|306837982|ref|ZP_07470840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653]
gi|264662821|gb|EEZ33082.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
gi|306406906|gb|EFM63127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653]
Length = 472
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 88/325 (27%), Positives = 149/325 (45%), Gaps = 6/325 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ + ++A+ + ++D NTG + PD PASLTK+MT Y
Sbjct: 20 LLLTAVTGYSTVSSIAPAMAKGDNRYAAIVIDANTGKTLFSANPDAQRYPASLTKMMTLY 79
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++F + + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 MLFEAIHAGRINKNTRIPVSAYAASRPPTKMGFRPGQSIRAEDAALAMITKSANDVAAAV 139
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+
Sbjct: 140 GEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPR 199
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
YF E +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV+
Sbjct: 200 EFAYFSRSSFEFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVV 259
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+G +R+ A L+ + +E P + + + +
Sbjct: 260 MGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKR 313
Query: 304 INYNTQMKEAKDKESHFIDFEKITL 328
+D + I I
Sbjct: 314 APVPVARIAVEDIINAEIGEGDIDQ 338
>gi|218235920|ref|YP_002367173.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus B4264]
gi|218163877|gb|ACK63869.1| D-alanyl-D-alanine carboxypeptidase DacA [Bacillus cereus B4264]
Length = 437
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 73/375 (19%), Positives = 136/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ E D
Sbjct: 7 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYEKNADESLAI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 127 AMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHPE 186
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ ++ +I + N NW
Sbjct: 187 GTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKIFQEGGKYPIDMANFNWMLKGL 246
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 247 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 306
Query: 267 KTDRKKINYIIKDFYQQ-------NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ + + V + V + + + +
Sbjct: 307 FEVKNFYGKDSVIKGYETVRVANAKDKDVVVQTKQAVSLPMSKGNKDIYKKEFKVLNKEQ 366
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 367 EAPIKKGVTISKMII 381
>gi|228952739|ref|ZP_04114812.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228806910|gb|EEM53456.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar kurstaki str. T03a001]
Length = 416
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 128/360 (35%), Gaps = 34/360 (9%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + A + L++ N+G ++ E D AS+TK+M+ Y+V
Sbjct: 1 MVVTIGKAAAETVPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIA 124
+ + K + IS+ A + S + T+ + + + SAN +A+
Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170
E + E FV+ MN+ SK G+ F+N+ G+ + +ARD
Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDC 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMKTGFT 221
AIL+ R+ DFPQ ++ +I + N NW + + G DG+KTG T
Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+G + + LI+V++ A R + L GF N +
Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNVYGKDSVIKG 300
Query: 282 -------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ V + V + + + +K + I
Sbjct: 301 HETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNTEQEAPIKKGVTISKMII 360
>gi|310639559|ref|YP_003944317.1| d-ala-d-ala carboxypeptidase [Paenibacillus polymyxa SC2]
gi|309244509|gb|ADO54076.1| D-ala-D-ala carboxypeptidase [Paenibacillus polymyxa SC2]
Length = 462
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 148/349 (42%), Gaps = 37/349 (10%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ L L++ +TG V+ PD P PAS+TK+MT Y+V +K+ K T +T
Sbjct: 64 NPPSLALRSAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVT 123
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+++NAS+ S +G T++ + V SAND VA+AE + TE+ FV+ MN T
Sbjct: 124 VNENASKSIGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNET 183
Query: 142 SKNLGLSATHFMNAHGVV------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
++ +G+ T+F+N+ G+ TARD A L+ I D P Y +
Sbjct: 184 AQRMGMKNTYFINSTGLDRKDMPTGFQPDTDRETVMTARDAATLAGYIIKDHPDYTRFTT 243
Query: 190 IKGLEIKGK---KYPNTNWA-----------VGTFLGADGMKTGFTCASGFNIVASAIQG 235
I+ + + N NW + G DGMKTG T +G +A +
Sbjct: 244 IQSYKFRPTDKAPIINYNWMLEANKNITNFRKFAYPGLDGMKTGHTANAGNCFTGTAERN 303
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
LI+V++GA R +A +L+ GF N ++ + +N+ E
Sbjct: 304 GMRLISVVMGADSDAHRFTETAKVLNYGFDNFEVKQVVAPKTVVKGVENVP-VTKGTETE 362
Query: 296 VCTTQKEIINYNTQMKEAKDKE----------SHFIDFEKITLLKNKIT 334
V K+ +++ + K S ++ +
Sbjct: 363 VPIVTKDAVSFIVPKGASNPKVTFTTNITPASSLVAPLKQGAKVGTITY 411
>gi|17987097|ref|NP_539731.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase
fraction C) [Brucella melitensis bv. 1 str. 16M]
gi|225852669|ref|YP_002732902.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
23457]
gi|256044826|ref|ZP_05447730.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
str. Rev.1]
gi|256113731|ref|ZP_05454535.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
str. Ether]
gi|256263838|ref|ZP_05466370.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
str. 63/9]
gi|265991251|ref|ZP_06103808.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
str. Rev.1]
gi|265995087|ref|ZP_06107644.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
str. Ether]
gi|17982757|gb|AAL51995.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase
fraction c) [Brucella melitensis bv. 1 str. 16M]
gi|225641034|gb|ACO00948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
23457]
gi|262766200|gb|EEZ11989.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
str. Ether]
gi|263002035|gb|EEZ14610.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
str. Rev.1]
gi|263093969|gb|EEZ17903.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
str. 63/9]
gi|326409190|gb|ADZ66255.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28]
Length = 472
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 6/325 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ + ++A+ + ++D NTG + D PASLTK+MT Y
Sbjct: 20 LLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLY 79
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++F + + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 MLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAV 139
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+
Sbjct: 140 GEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPR 199
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
YF + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV+
Sbjct: 200 EFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVV 259
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+G +R+ A L+ + +E P + + + +
Sbjct: 260 MGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVASIDLPKTKR 313
Query: 304 INYNTQMKEAKDKESHFIDFEKITL 328
+D + I I
Sbjct: 314 APVPVARIAVEDIINAEIGEGDIDQ 338
>gi|190890661|ref|YP_001977203.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652]
gi|190695940|gb|ACE90025.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT
652]
Length = 432
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 97/307 (31%), Positives = 153/307 (49%), Gaps = 8/307 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR+ L + L+ P ++A +LD TG V+A D +PASLTK+M
Sbjct: 1 MRKLLAAVLTVTLAVSAPLAALA----GSASLILDARTGKVLAAENADTLNHPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A
Sbjct: 57 TLYLTFEALKRGKIDWDTPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAA 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE+L +E F + M ++ LG+S T F+NA G+ TTARDM+ L + +
Sbjct: 117 AAMAETLGGSESGFARMMTAKARQLGMSRTVFVNASGLPNPSQVTTARDMSTLGVALMKN 176
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+P F + +GK N + + G DG+KTG+T ASGFN+V++ G++ ++
Sbjct: 177 YPNEYRLFSMASFNFRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 236
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD----RKKINYIIKDFYQQNLSNEVPNISEEV 296
V+LG +R+ A LL + R + K+ + + + ++ +
Sbjct: 237 GVVLGGRTARSRDAKMAGLLDRYLGRASSSGGARLVASVGAKEPVEVASAADASDVPVPL 296
Query: 297 CTTQKEI 303
+
Sbjct: 297 NAPRPAG 303
>gi|320175602|gb|EFW50695.1| D-alanyl-D-alanine carboxypeptidase [Shigella dysenteriae CDC
74-1112]
Length = 347
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 85/310 (27%), Positives = 140/310 (45%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + ++ K + + N +E + + + K D +
Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|325265744|ref|ZP_08132433.1| D-alanyl-D-alanine carboxypeptidase DacA [Kingella denitrificans
ATCC 33394]
gi|324982875|gb|EGC18498.1| D-alanyl-D-alanine carboxypeptidase DacA [Kingella denitrificans
ATCC 33394]
Length = 489
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 76/319 (23%), Positives = 132/319 (41%), Gaps = 5/319 (1%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
A + Y + D + V+AE P PASLT LM AY+ F L +
Sbjct: 131 SLSATQSAPHIQAAAYAVYDAQSRQVLAEKNFALPIEPASLTHLMVAYLAFKALDAQTIT 190
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
T+S+NA + + ++G + L +++ S ND A+ +AE + +E FV
Sbjct: 191 PKQEWTVSENAWKSAGNRMFLERGGKANTIDLLHGMLILSGNDAALTLAEGMAGSESAFV 250
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
MN ++ LG+ THF N G+ H ++ +D+ ILS + DFP Y F K
Sbjct: 251 AQMNAEAERLGMRQTHFENVTGLHSPKHVSSVQDLLILSQALLRDFPDYYQIFAKKTFTY 310
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
PN N + DG+K G++ +G++++ + + + + ++++GA R
Sbjct: 311 NKITQPNHNLLLFRNDDVDGLKAGYSDIAGYHLITGSHRNGRRIFSIVIGASSNEARAIE 370
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE----VPNISEEVCTTQKEIINYNTQMK 311
S LL+ +K K L +++V T ++K
Sbjct: 371 SRKLLNYALEAFDTQKIYAANTKITELPVLDGSHTRIEAGTAQDVYLTFPRHSPQPPEIK 430
Query: 312 EAKDKESHFIDFEKITLLK 330
+ +H +K L
Sbjct: 431 ISVPNVAH-APVQKGQTLG 448
>gi|209964991|ref|YP_002297906.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW]
gi|209958457|gb|ACI99093.1| D-alanyl-D-alanine carboxypeptidase [Rhodospirillum centenum SW]
Length = 458
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 84/236 (35%), Positives = 125/236 (52%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D TG ++ D PAS+TK+MT Y+ F L +K L + +S A+
Sbjct: 62 ASIVIDAETGEILHAASADTRNFPASMTKMMTLYMTFDALDARKLTLDQRLKVSSRAAGM 121
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
PS K G T+ ++ + L+ KSAND AV +AE++ TE +F + M + ++ LG+
Sbjct: 122 APSKLGLKPGETIRTEDCILSLVTKSANDCAVVLAEAIGGTETEFARMMTDRARALGMRR 181
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T F NA G+ G +TARDMA L+ + D +Y YF + KG + N N +
Sbjct: 182 TTFRNASGLPNAGQLSTARDMARLAQALIQDHAKYYPYFSTRQFTYKGVTHGNHNRLMAR 241
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ G DG+KTGF ASGFN+ ASA++ + LI V+ G R+ A LL F
Sbjct: 242 YRGMDGLKTGFIRASGFNLAASAVRDGRRLIGVVFGGETAVWRDNHMADLLDKAFE 297
>gi|154248244|ref|YP_001419202.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
autotrophicus Py2]
gi|154162329|gb|ABS69545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
autotrophicus Py2]
Length = 399
Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats.
Identities = 86/317 (27%), Positives = 131/317 (41%), Gaps = 8/317 (2%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ P L+D TG ++ E D P +L K+MTA VVFS LK K L TP T+S
Sbjct: 29 FQTQAPSAILVDYETGTILFEKDADRRIAPGTLAKVMTADVVFSQLKAGKIALDTPFTVS 88
Query: 84 KNASEYPPSN-----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
NA + + L ++V S ND A+A+AE + TE +F Q M
Sbjct: 89 VNAWRRGGGPSGGAAMFAEVNKPAPVGELLAGMLVVSGNDAAIALAEGVGGTETEFSQQM 148
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+K +G++ + F NA G G ++TARD+++L+ + +P Y F +E
Sbjct: 149 TERAKAIGMANSEFRNATGFADPGQFSTARDLSVLAQHVIRTYPDYYPVFARTSIEWSRI 208
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
K N N + +GADG++ G+ G++ + SA+Q Q LI V+L A R + +
Sbjct: 209 KQRNRNVLLDAGIGADGLQIGWVKDVGYHALGSAVQNGQRLIVVVLAAKTEKERLEEAKK 268
Query: 259 LLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
LL GF + R + S V + T
Sbjct: 269 LLEWGFQSFRQRVIFTADQEVGRAQVFGGASGTVGLVGSRPVTVLTPRSGNERITARVVY 328
Query: 316 KESHFIDFEKITLLKNK 332
K T +
Sbjct: 329 NGPLLAPVTKGTQVGRL 345
>gi|162149241|ref|YP_001603702.1| D-alanyl-D-alanin carboxypeptidase [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787818|emb|CAP57416.1| putative D-alanyl-D-alanin carboxypeptidase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 423
Score = 177 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 91/264 (34%), Positives = 145/264 (54%), Gaps = 1/264 (0%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F + + A + F + A+ ++D TG +++++ PD PASLTKLMT Y
Sbjct: 80 FALSVGCAAVMAGFVPRAHAQYVGQISSIVMDARTGAILSQSNPDLQRFPASLTKLMTLY 139
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ F L + L + +S +++ PS GS +T++ A+ L+ KSAND A A+
Sbjct: 140 LAFKALHAGQITLDQSVPVSAHSASMEPSKLGLMPGSYLTVEQAVLGLVTKSANDAACAL 199
Query: 124 AESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
E + ++ F M ++ LG++ T F NA G+ T+ARD+A+L+ +I T+FP
Sbjct: 200 GELMGGGDEGRFADLMTRQARALGMTRTTFRNASGLPNDEQVTSARDLALLTRQIITEFP 259
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
Y HYF + G++ PN + + + GADG+KTG+T +G N+V SAI+ + LI V
Sbjct: 260 DYYHYFSVPAFYFHGRQVPNHDPMLRIYPGADGLKTGYTTDAGRNLVTSAIRENVRLIGV 319
Query: 243 ILGALDRNTRNKVSASLLSMGFYN 266
+LGA R+ V AS+L GF
Sbjct: 320 VLGARTNPQRSAVMASILDDGFRQ 343
>gi|228943200|ref|ZP_04105668.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228975976|ref|ZP_04136496.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228979109|ref|ZP_04139457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis Bt407]
gi|228780635|gb|EEM28854.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis Bt407]
gi|228783733|gb|EEM31792.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228816479|gb|EEM62636.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar berliner ATCC 10792]
Length = 442
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 72/375 (19%), Positives = 137/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ + D
Sbjct: 12 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYKKNADESLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ +
Sbjct: 132 AMAIYSANGATIALVEEIASKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNNDLKGYHPE 191
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N NW
Sbjct: 192 GTTLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQEGGKYPIDMANFNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ ++ V + V + + + +
Sbjct: 312 FEVKNVYRKDSVVKGHETVRVANAKDTDVVVQTKQAVSLPMPKGNKDIYKKEFKVLNKKQ 371
Query: 320 FIDFEKITLLKNKIT 334
+ +K + I
Sbjct: 372 EVPIKKGVTISKMII 386
>gi|296447596|ref|ZP_06889517.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
trichosporium OB3b]
gi|296254911|gb|EFH02017.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
trichosporium OB3b]
Length = 448
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 99/301 (32%), Positives = 159/301 (52%), Gaps = 2/301 (0%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D +G ++ + P W PASLTKLMT YV ++ + TP+ +S A+ P
Sbjct: 28 VVIDVASGQILEQEQPTQSWYPASLTKLMTVYVALDAVRSGRLSYDTPLVVSPRATSMAP 87
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S F GS +TL NAL +L+VKSAND+AV IAE + + + F MN S LG+ ++
Sbjct: 88 SKMGFPPGSEVTLRNALVMLMVKSANDVAVTIAEGVSGSVEAFADEMNRASARLGMRESY 147
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
++N +G+ T+ARD+A+L + +FP+ ++ I ++ + +P N +G +
Sbjct: 148 WVNPNGLPDDRQVTSARDLALLGRALLVEFPESAGFYNIGAMKFGSQIHPTHNGLLGRYP 207
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
GADGMKTGFTC +G+N+VASA G Q LIAV+LGA R +ASLL F + +
Sbjct: 208 GADGMKTGFTCPAGYNLVASATHGGQKLIAVVLGAPSGAARTAKAASLLDKAFTSGSPAG 267
Query: 272 KINYIIKDFY--QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + ++ + V + + + T ++ E+ +D + I L
Sbjct: 268 ALAALPSSGVAPAPDMRDSVCHHRGKASAEYMAEVEEMTIAIPHENGETEAVDVKAIAQL 327
Query: 330 K 330
Sbjct: 328 P 328
>gi|315500037|ref|YP_004088840.1| serine-type d-ala-d-ala carboxypeptidase [Asticcacaulis excentricus
CB 48]
gi|315418049|gb|ADU14689.1| Serine-type D-Ala-D-Ala carboxypeptidase [Asticcacaulis excentricus
CB 48]
Length = 464
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 90/268 (33%), Positives = 150/268 (55%), Gaps = 1/268 (0%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ +L+ + ++D +G V D P PASLTK+MT Y+ F +
Sbjct: 38 IGVLAVSPARAQDPADSDRYAAIVVDAQSGEVFYAMRADSPRYPASLTKIMTLYMAFEEM 97
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ + IT+S +A+ PP+ S + G T+T+D A++L+ SAND+A A+ E +
Sbjct: 98 AQGRLKPDDVITLSAHAASMPPTKSGLRAGDTITVDMAMRLIAAYSANDLAAALGEHIGG 157
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+E++F M ++ LG++ ++F+NA G+ ++ARD A+L+ + DFPQY YF
Sbjct: 158 SEQRFAALMTVKAQELGMTRSNFVNASGLPDSRQVSSARDFAVLARAVMRDFPQYYEYFH 217
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
++ ++ G+ Y N N + + G DGMKTGF A+G+N+VAS +G+ LIAV+LG ++
Sbjct: 218 VRSVQFNGRTYSNHNPLLA-YPGVDGMKTGFINAAGYNLVASQRKGNHRLIAVMLGGSNK 276
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYII 277
R + SL++ GF R K I+
Sbjct: 277 AQRREHVTSLMNTGFDVFARRDKGEQIV 304
>gi|296503035|ref|YP_003664735.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
gi|296324087|gb|ADH07015.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
Length = 434
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 72/367 (19%), Positives = 132/367 (35%), Gaps = 37/367 (10%)
Query: 5 LVIIAMAMLSN---IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ I +M+ A + L++ N+G ++ E D AS+TK+M+
Sbjct: 12 VLTIFCSMVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMS 71
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSAN 117
Y+V + + K + IS+ A + S + T+ + + + SAN
Sbjct: 72 EYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSAN 131
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------H 163
+A+ E + E FV+ MN+ SK G+ F+N+ G+ +
Sbjct: 132 GATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKN 191
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGAD 214
+ARD AIL+ R+ DFPQ ++ +I + N NW + + G D
Sbjct: 192 KMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVD 251
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G+KTG T +G + + LI+V++ A R + L GF N +
Sbjct: 252 GLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNVYG 311
Query: 275 YIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ V + V + + + ++
Sbjct: 312 KDSVIKGHETVRVANAKEKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNMEQGAPIKEGG 371
Query: 328 LLKNKIT 334
+ I
Sbjct: 372 TISKMII 378
>gi|254689394|ref|ZP_05152648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
str. 870]
gi|256257640|ref|ZP_05463176.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
str. C68]
gi|260883925|ref|ZP_05895539.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
str. C68]
gi|297248482|ref|ZP_06932200.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
B3196]
gi|260873453|gb|EEX80522.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
str. C68]
gi|297175651|gb|EFH34998.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
B3196]
Length = 472
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 6/325 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ + ++A+ + ++D NTG + D PASLTK+MT Y
Sbjct: 20 LLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLY 79
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++F + + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 MLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAV 139
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+
Sbjct: 140 GEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPR 199
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
YF + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV+
Sbjct: 200 EFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVV 259
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+G +R+ A L+ + +E P + + + +
Sbjct: 260 MGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEDPQVVASIDLPKAKR 313
Query: 304 INYNTQMKEAKDKESHFIDFEKITL 328
+D + I I
Sbjct: 314 APVPVARIAVEDIINAEIGEGDIDQ 338
>gi|146277284|ref|YP_001167443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
ATCC 17025]
gi|145555525|gb|ABP70138.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodobacter sphaeroides
ATCC 17025]
Length = 389
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 74/330 (22%), Positives = 135/330 (40%), Gaps = 13/330 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
++A + + D T V+ + P PAS++KLMT ++F L++ + +
Sbjct: 16 TALPALAFDTRARAAWVYDVTTRTVLLDKNAHEPLPPASMSKLMTLNMLFEALRDGRVTM 75
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T +S A + S ++ T+++ + ++V S ND V +AE L TE F +
Sbjct: 76 NTTFAVSTKAKQMGGSKMFVEERDRPTVEDLIHGIVVNSGNDACVVVAEGLNGTESDFSR 135
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN +K LG++ + F N+ G + GH + D+ IL+ R+ +FP+Y YF K
Sbjct: 136 AMNVRAKALGMNDSTFTNSSGWPEPGHRMSVHDLGILAVRLIEEFPEYYPYFAHTEFNYK 195
Query: 197 GKKYPNTNWA-------VGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALD 248
+ N N ADG+KTG T +G+ +V SA + + ++ V+ G
Sbjct: 196 DRVPSNANNRNPLLRLGPDGDWTADGLKTGHTQEAGYGLVGSAVQKDGRRIVFVLTGLAT 255
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEII 304
R + +++ F + + + D + N S +E+V ++
Sbjct: 256 EADRAQEGEQIVNWAFRQFVQKTLVKKGQRVAEADVWLGNASRVGLVPAEDVTLLLPALV 315
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
E L +
Sbjct: 316 Q-EGVTAEVSYTSPLRAPIAAGQELAELVI 344
>gi|219668772|ref|YP_002459207.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
hafniense DCB-2]
gi|219539032|gb|ACL20771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
hafniense DCB-2]
Length = 423
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 74/344 (21%), Positives = 133/344 (38%), Gaps = 18/344 (5%)
Query: 1 MRQFLVIIAMAMLSNIF---------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + +I + + IF + L+D +G + D
Sbjct: 1 MKRIIALITLLLYFFIFVPALTAAPETQTAAPPEISGEAAYLIDVQSGQTLYSKNGDQLM 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS TK+MT + + + + + + + + + G ++L++ L L
Sbjct: 61 APASTTKIMTGLLGIELGNPEDIVTASETML--DYNTVYGTRIYLEPGEQLSLEDMLYAL 118
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ SAND AVAIAE + FV MN + +LGL T F N G+ + GH TA D+A
Sbjct: 119 LLNSANDAAVAIAEHISGNTAAFVSLMNQRAADLGLKNTTFKNPSGLNEEGHLITAHDLA 178
Query: 172 ILSWRIK-----TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
++ D+ + + + E + N N + GMKTG+T +
Sbjct: 179 RIAQAAYANPVFRDYIKTKSHVIPRAKENVPIEMINENKLLWRDDTITGMKTGYTSVAQN 238
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+VASA + + +I VIL + R +LL GF + +
Sbjct: 239 CLVASASRDGRDVIGVILKSPGREI-YTDMQALLDYGFEQFENTLYKGVGDSLGQLEIQG 297
Query: 287 NEVPNISEE-VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V + ++ + TQK+ + + + +L
Sbjct: 298 QPVNLLIDQALWITQKKDNTLPQPRINILPIDGELAEVAEGQVL 341
>gi|256369597|ref|YP_003107107.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
gi|255999759|gb|ACU48158.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
Length = 472
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 6/325 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ + ++A+ + ++D NTG + D PASLTK+MT Y
Sbjct: 20 LLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLY 79
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++F + + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 MLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAV 139
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+
Sbjct: 140 GEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPR 199
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
YF + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV+
Sbjct: 200 EFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVV 259
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+G +R+ A L+ + +E P + + + +
Sbjct: 260 MGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKH 313
Query: 304 INYNTQMKEAKDKESHFIDFEKITL 328
+D + I I
Sbjct: 314 APVPVARIAVEDIINAEIGEGDIDQ 338
>gi|329114967|ref|ZP_08243722.1| D-alanyl-D-alanine carboxypeptidase DacF [Acetobacter pomorum
DM001]
gi|326695410|gb|EGE47096.1| D-alanyl-D-alanine carboxypeptidase DacF [Acetobacter pomorum
DM001]
Length = 382
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 93/267 (34%), Positives = 145/267 (54%), Gaps = 2/267 (0%)
Query: 1 MRQFLVIIA-MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+R+++ ++A +A+ + + A+ ++D TG V++++ PD PASLTKL
Sbjct: 23 LRKWVGLLAGLAVGTTATYGKAHAQYAGQLSSIVVDARTGAVLSQDDPDLRRYPASLTKL 82
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT Y+ F+ L+ L + +S +AS PS GS +T++ A+ L+ KSAND
Sbjct: 83 MTLYMTFNALRAGAISLDQAVPVSIHASTMEPSKLGLVPGSHLTVEQAILALVTKSANDA 142
Query: 120 AVAIAESLCKTEK-KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A A+ E + + +F M + LG+S T F NA G+ TTARD++ L R+
Sbjct: 143 ACALGELIGGGSEPQFAAMMTQQAHYLGMSNTTFRNASGLPDPDQMTTARDLSTLGRRLI 202
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
DFP+Y HYF + PN N + + GADGMKTG+T +G N+V SAI+ +
Sbjct: 203 ADFPEYYHYFSTPYFSFHRRIIPNHNPMLKVYAGADGMKTGYTQEAGRNLVTSAIRDNVR 262
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFY 265
L+ V++GA R+ V A+ L GF
Sbjct: 263 LVGVVMGASSNTQRSLVMANQLDRGFD 289
>gi|154253237|ref|YP_001414061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum
lavamentivorans DS-1]
gi|154157187|gb|ABS64404.1| Serine-type D-Ala-D-Ala carboxypeptidase [Parvibaculum
lavamentivorans DS-1]
Length = 558
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 81/259 (31%), Positives = 133/259 (51%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+I + +L + + ++D +G V+ D PASLTK+MT Y+
Sbjct: 23 FCLICLFLLFGLLVAAPVQAAAPKEAALVIDAYSGKVLYARSADEYRYPASLTKVMTLYL 82
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+F L+ + L + IT++ + PPS + G T+++++A+ L+ +SAND+A A
Sbjct: 83 LFEKLQAGEVTLKSRITMTPRGAGMPPSKLGLRAGQTLSVEDAILALVTRSANDVASATG 142
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
+ TE F M ++ LG++ T + NA G+ TTARD A L+ RI+ DFPQY
Sbjct: 143 AFIAGTEDDFAALMTKKARALGMTRTTYKNASGLPNSAQKTTARDQATLAKRIREDFPQY 202
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
HYF + + N N +G + G G+KTG+T ASGFN+ A+ + ++ LI V++
Sbjct: 203 YHYFSTEYFAWGKARIRNHNRLLGEYKGTTGLKTGYTNASGFNLTATVERDNKFLIGVVM 262
Query: 245 GALDRNTRNKVSASLLSMG 263
G R+ +L
Sbjct: 263 GGKQAKLRDAHMIEILDRA 281
>gi|308066921|ref|YP_003868526.1| D-alanyl-D-alanine carboxypeptidase precursor [Paenibacillus
polymyxa E681]
gi|305856200|gb|ADM67988.1| D-alanyl-D-alanine carboxypeptidase precursor [Paenibacillus
polymyxa E681]
Length = 462
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 147/349 (42%), Gaps = 37/349 (10%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
L L++ +TG V+ PD P PAS+TK+MT Y+V +K+ K T +T
Sbjct: 64 NPPNLALRSAILIEPSTGQVLLSMNPDEPLPPASMTKMMTEYIVAEQVKQGKLKWTDKVT 123
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+++NAS+ S +G T++ + V SAND VA+AE + TE+ FV+ MN T
Sbjct: 124 VNENASKSIGSRIFLAQGDQHTVEELYIAMAVGSANDATVALAERVSGTEQDFVKLMNET 183
Query: 142 SKNLGLSATHFMNAHGVV------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
++ +G+ T+F+N+ G+ TARD A L+ I D P Y +
Sbjct: 184 AQRMGMKNTYFINSTGLDRSDMPKGFQPDTDRETVMTARDAATLASYIIKDHPDYTRFTT 243
Query: 190 IKGLEIKGK--------------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
I+ + + TN+ + G DGMKTG T +G +A +
Sbjct: 244 IQSYKFRPTDKAPLININWMLEANKNITNFRKFAYPGLDGMKTGHTANAGNCFTGTAERN 303
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
LI+V++GA R +A +L+ GF N ++ I +N+ E
Sbjct: 304 GMRLISVVMGADSDAHRFTETAKVLNYGFDNFEVKQVIAPKTVVKGVENVP-VTKGTETE 362
Query: 296 VCTTQKEIINYNTQMKEAKDKE----------SHFIDFEKITLLKNKIT 334
V K+ +++ + K S ++ +
Sbjct: 363 VPIVTKDAVSFIVPKGASNPKVTFTTNITPASSLVAPLKQGAKVGTITY 411
>gi|326940194|gb|AEA16090.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 437
Score = 177 bits (447), Expect = 3e-42, Method: Composition-based stats.
Identities = 72/375 (19%), Positives = 137/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ + D
Sbjct: 7 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYKKNADESLAI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 67 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+ +
Sbjct: 127 AMAIYSANGATIALVEEIASKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNNDLKGYHPE 186
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ + +I + N NW
Sbjct: 187 GTTLDEKNKMSARDCAILAQRLIQDFPKILDTAKIPKKTFQEGGKYPIDMANFNWMLKGL 246
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 247 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 306
Query: 267 KTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ ++ V + V + + + +
Sbjct: 307 FEVKNVYRKDSVVKGHETVRVANAKDTDVVVQTKQAVSLPMPKGNKDIYKKEFKVLNKKQ 366
Query: 320 FIDFEKITLLKNKIT 334
+ +K + I
Sbjct: 367 EVPIKKGVTISKMII 381
>gi|15895333|ref|NP_348682.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
ATCC 824]
gi|15025050|gb|AAK80022.1|AE007709_6 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
ATCC 824]
gi|325509478|gb|ADZ21114.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA
2018]
Length = 404
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 80/299 (26%), Positives = 138/299 (46%), Gaps = 8/299 (2%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P + + LL+ +TG +I E + PAS+TK+MT + + K LT
Sbjct: 41 PNDTSGINVEAKSAILLEPSTGAIIYEKNSHEKFAPASVTKIMTMLLTMEAVDSGKIKLT 100
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+T+S+NA + S+ G T++ LK + + S ND AVA+AE L +++ FV
Sbjct: 101 DKVTVSENAKKMGGSSMLLDTGEVRTVEELLKGIAIASGNDAAVAMAEYLGGSQENFVNM 160
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----PQYMHYFQIKGL 193
MN ++ +G+ T F N G+ GH TTA D++++S + + I
Sbjct: 161 MNKKAQEIGMKDTSFKNCTGLNADGHMTTAYDISLMSRELLKHPKILKFTGTYMETISEG 220
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
N N V F G DG+KTGFT + + I A+A + + ++A+I+GA RN
Sbjct: 221 RKTPIALVNHNKLVRFFKGCDGLKTGFTDEAKYCISATACKDNVRMLAIIMGAPTYKVRN 280
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFY----QQNLSNEVPNISEEVCTTQKEIINYNT 308
+ ++ L++ GF T +K + ++ + +++ + N N
Sbjct: 281 RDASMLMNYGFSKFTAKKVVEKDSVVKKVALNKKGDKYFLIKAVDDLSVVIPKGENCNI 339
>gi|239832060|ref|ZP_04680389.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
LMG 3301]
gi|239824327|gb|EEQ95895.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
LMG 3301]
Length = 469
Score = 176 bits (446), Expect = 3e-42, Method: Composition-based stats.
Identities = 85/298 (28%), Positives = 144/298 (48%), Gaps = 9/298 (3%)
Query: 8 IAMAMLSNIFPFLSIAETNKL---PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+ +A+++ + ++D NTG + + D PASLTK+MT Y+
Sbjct: 20 LLLAVVTGCSTASTTIPAIAAGDRYAAIVIDANTGKTLFASNADAQRYPASLTKMMTLYM 79
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+F ++ + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 LFEAMQAGRMSKDTRIPVSAYAAARPPTKIGFRPGQSIRAEDAALAMITKSANDVATAVG 139
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E L +E++F Q M ++ LG+ T F NA G+ +TTARDMAILS ++ FP
Sbjct: 140 EYLGGSEERFAQMMTAKARRLGMRNTTFRNASGLPNMAQHTTARDMAILSIALRQHFPNE 199
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
YF + +G+ N +G G DG+KTG+T ASG+N+ +S + L+AV++
Sbjct: 200 FSYFSRRSFVFRGQTINGHNRLLGRVEGVDGIKTGYTNASGYNLASSVSLDGRRLVAVVM 259
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
G +R+ A L+ + + N+ P + V + +
Sbjct: 260 GGNTGASRDAHMAQLI----RKYLPMATRSRNAAPLV--AMRNDAPQVVASVDLPKAK 311
>gi|229065500|ref|ZP_04200748.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH603]
gi|228715818|gb|EEL67590.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH603]
Length = 416
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 71/353 (20%), Positives = 129/353 (36%), Gaps = 34/353 (9%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
A + L++ N+G ++ + D AS+TK+M+ Y+V + + K
Sbjct: 8 ASAETVPAIDVEAGSAILVEANSGKILYQKNADESLAIASMTKMMSEYLVHEAVDKGKLK 67
Query: 76 LTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ IS+ A + S + T+ + +++ SAN +A+AE + E
Sbjct: 68 WDQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSANGATIALAEEIAGKE 127
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMAILSWRI 177
FV+ MN+ SK G+ F+N+ G+ + +ARD AIL+ R+
Sbjct: 128 VNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEKNKMSARDCAILAQRL 187
Query: 178 KTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMKTGFTCASGFNI 228
DFP+ + +I + N NW + + G DG+KTG T +G
Sbjct: 188 IQDFPKILDTAKIPKKTFQKGGKYPIDMTNFNWMLKGLIKQYEGVDGLKTGTTPEAGDCF 247
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY------- 281
+ + LI+V++ A R + L GF N +K
Sbjct: 248 TGTVEKNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKKVYGKDSVVKGHETVRVA 307
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ V + V + + + + +K + I
Sbjct: 308 NAKDKDVVVQTKQAVSLPMPKGNKDVYKKEFKVSNKEQEAPIKKGVTISQMII 360
>gi|298293245|ref|YP_003695184.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
gi|296929756|gb|ADH90565.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
Length = 461
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 101/310 (32%), Positives = 168/310 (54%), Gaps = 4/310 (1%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+++ +G V+ + PW PAS+TKLMTAYV F +++ + T +T+S NA
Sbjct: 33 ATPALVIEVESGKVLLADDATKPWYPASITKLMTAYVTFKAIRQGRLTPETLLTVSANAV 92
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
PS FK G+ +T+DNALK+++VKSAND+AV +AE + + FV MN+T+ LG+
Sbjct: 93 AQKPSKMGFKAGTQLTVDNALKMMLVKSANDMAVVLAEGVSGSLPAFVAEMNSTAAQLGM 152
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+ +HF N +G+ + +TARD+A+L+ I DFP+ F+I +++ + N +
Sbjct: 153 TGSHFANPNGLPDPDNVSTARDLAVLARHIFLDFPEQADLFRIPAMKLGTAVIRSYNKLI 212
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+ GADGMKTGF CASGFN+VASA +G++ L+ V+LG R + +A LL GF +
Sbjct: 213 DRYPGADGMKTGFICASGFNLVASAKRGNRHLLVVVLGTQSGRARTEQAALLLERGFQH- 271
Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + +N ++ +VC +++ + +
Sbjct: 272 SWQIFGAMAPTVEALRNEGGAPADMRAQVCGGKRKNTASEDDDS-PSMGTTTAAGYVAAG 330
Query: 328 L--LKNKITK 335
+ L +++T
Sbjct: 331 MGDLGDRVTG 340
>gi|229190458|ref|ZP_04317457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus ATCC 10876]
gi|228593007|gb|EEK50827.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus ATCC 10876]
Length = 416
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 129/360 (35%), Gaps = 34/360 (9%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + A + L++ N+G ++ E D AS+TK+M+ Y+V
Sbjct: 1 MVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIA 124
+ + K + IS+ A + S + T+ + + + SAN +A+
Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170
E + E FV+ MN+ SK G+ F+N+ G+ + +ARD
Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDC 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMKTGFT 221
AIL+ R+ DFPQ ++ +I + N NW + + G DG+KTG T
Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+G + + LI+V++ A R + L GF N +
Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNVYGKDSVVKG 300
Query: 282 -------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ V + + V + + + +K + I
Sbjct: 301 HETVRVANAKEKDVVVQMKQVVSLPMPKGNKDIYKKEFKVSNTEQEAPIKKGVTISKMII 360
>gi|161619123|ref|YP_001593010.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
23365]
gi|254704458|ref|ZP_05166286.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
686]
gi|261755137|ref|ZP_05998846.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
686]
gi|161335934|gb|ABX62239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
23365]
gi|261744890|gb|EEY32816.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
686]
Length = 472
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 6/325 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ + ++A+ + ++D NTG + D PASLTK+MT Y
Sbjct: 20 LLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLY 79
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++F + + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 MLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAV 139
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+
Sbjct: 140 GEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPR 199
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
YF + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV+
Sbjct: 200 EFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVV 259
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+G +R+ A L+ + +E P + + + +
Sbjct: 260 MGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKR 313
Query: 304 INYNTQMKEAKDKESHFIDFEKITL 328
+D + I I
Sbjct: 314 APVPVARIAVEDIINAEIGEGDIDQ 338
>gi|23502050|ref|NP_698177.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
gi|23348005|gb|AAN30092.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
Length = 472
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 86/325 (26%), Positives = 148/325 (45%), Gaps = 6/325 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ + ++A+ + ++D NTG + D PASLTK+MT Y
Sbjct: 20 LLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLY 79
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++F + + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 MLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAV 139
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+
Sbjct: 140 GEYLGGSEERFAQMMTARARRLGMRNTTFRNASGLPNMAQHSSARDMAILGMALRRHFPR 199
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
YF + +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV+
Sbjct: 200 EFAYFSRSSFDFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVV 259
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+G +R+ A L+ + +E P + + + +
Sbjct: 260 MGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKR 313
Query: 304 INYNTQMKEAKDKESHFIDFEKITL 328
+D + I I
Sbjct: 314 APVPVARIAVEDIINAEIGEGDIDQ 338
>gi|306844035|ref|ZP_07476630.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1]
gi|306275790|gb|EFM57514.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1]
Length = 472
Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats.
Identities = 87/325 (26%), Positives = 148/325 (45%), Gaps = 6/325 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ + ++A+ + ++D NTG + D PASLTK+MT Y
Sbjct: 20 LLLTAVTGYSTVSSIAPAMAKGDNRYAAIVVDANTGKTLFSANADAQRYPASLTKMMTLY 79
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++F + + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 MLFEAIHAGRINKDTRIPVSAYAASRPPTKIGFRPGQSIRAEDAALAMITKSANDVAAAV 139
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E L +E++F Q M ++ LG+ T F NA G+ +++ARDMAIL ++ FP+
Sbjct: 140 GEYLGGSEERFAQMMTARARRLGMRKTTFRNASGLPNMAQHSSARDMAILGMALRRHFPR 199
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
YF E +G+ N +G G DG+KTG+T ASG+N+V+S + L+AV+
Sbjct: 200 EFAYFSRSSFEFRGQTIRGHNRLLGRVEGVDGIKTGYTNASGYNLVSSVNLDGRRLVAVV 259
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+G +R+ A L+ + +E P + + + +
Sbjct: 260 MGGNTGASRDAHMAQLIR------KYLPMAARGRNNDALIAARSEAPQVVASIDLPKAKR 313
Query: 304 INYNTQMKEAKDKESHFIDFEKITL 328
+D + I I
Sbjct: 314 APVPVARIAVEDIINAEIGEGDIDQ 338
>gi|315643932|ref|ZP_07897102.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
vortex V453]
gi|315280307|gb|EFU43596.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
vortex V453]
Length = 336
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 79/278 (28%), Positives = 128/278 (46%), Gaps = 19/278 (6%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ +++ + I + K L+ TG V+ + D P PAS++K+MT +V
Sbjct: 46 FVVILMAVYITRVIIPPSIKASSAILIHAETGRVLYAQHADLPLPPASMSKMMTELLVLD 105
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
++ + ++IS+ A+ P S +G + TL + LI+ SAND AVAIAE L
Sbjct: 106 AVRSGQHAWDEEVSISRYAAGVPGSGIGMVEGESYTLTQLFQALIIHSANDAAVAIAEHL 165
Query: 128 CKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQHG------------HYTTARDMAILS 174
+E +FV+ MN +K +GLS T F NA G+ TARD A+L+
Sbjct: 166 KGSETQFVKEMNARAKEIGLSDRTVFANASGLPAADLASFAEAATEGETIMTARDSAMLA 225
Query: 175 WRIKTDFPQYMHYFQIKGL--EIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNI 228
I P + + K TN ++G DG KTG+T ++G+
Sbjct: 226 RWIMNKHPDLLEVTSQRDFPLPQKDLTLHTTNLMLPGEAHGYVGNDGFKTGYTSSAGYCF 285
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+A +G LI+V++G + R + L++ GF
Sbjct: 286 TGTAARGGNRLISVVMGTESTDQRFTETRKLMNYGFER 323
>gi|229150695|ref|ZP_04278909.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus m1550]
gi|228632782|gb|EEK89397.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus m1550]
Length = 416
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 128/360 (35%), Gaps = 34/360 (9%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + A + L++ N+G ++ E D AS+TK+M+ Y+V
Sbjct: 1 MVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIA 124
+ + K + IS+ A + S + T+ + + + SAN +A+
Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170
E + E FV+ MN+ SK G+ F+N+ G+ + +ARD
Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDC 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMKTGFT 221
AIL+ R+ DFPQ ++ +I + N NW + + G DG+KTG T
Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+G + + LI+V++ A R + L GF N +
Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNVYGKDSVIKG 300
Query: 282 -------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ V + V + + + +K + I
Sbjct: 301 HETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNTEQEAPIKKGVTISKMII 360
>gi|30020579|ref|NP_832210.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|29896130|gb|AAP09411.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
Length = 437
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 72/367 (19%), Positives = 132/367 (35%), Gaps = 37/367 (10%)
Query: 5 LVIIAMAMLSN---IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ I +M+ A + L++ N+G ++ E D AS+TK+M+
Sbjct: 15 VLTIFCSMVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMS 74
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSAN 117
Y+V + + K + IS+ A + S + T+ + + + SAN
Sbjct: 75 EYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSAN 134
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------H 163
+A+ E + E FV+ MN+ SK G+ F+N+ G+ +
Sbjct: 135 GATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKN 194
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGAD 214
+ARD AIL+ R+ DFPQ ++ +I + N NW + + G D
Sbjct: 195 KMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVD 254
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G+KTG T +G + + LI+V++ A R + L GF N +
Sbjct: 255 GLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNVYG 314
Query: 275 YIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ V + V + + + ++
Sbjct: 315 KDSVIKGHETVRVANAKEKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNMEQGAPIKEGG 374
Query: 328 LLKNKIT 334
+ I
Sbjct: 375 TISKMII 381
>gi|86357959|ref|YP_469851.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
gi|86282061|gb|ABC91124.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
etli CFN 42]
Length = 354
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 89/279 (31%), Positives = 138/279 (49%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
LS+ + A+ ++D +G V+ + D PASLTK+MT Y+ F L E
Sbjct: 76 LSSALLMCAFAQAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMMTLYLAFEALHEG 135
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ +T+S+NA P G +TL A++ +IV SAND AVAIAE L +E+
Sbjct: 136 RLTWDQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIIVLSANDSAVAIAEQLGGSEQ 195
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F + M + + LG+ T F N G+ TTARDMA L + DFP+ F ++G
Sbjct: 196 TFARTMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRDFPEEFKLFSMRG 255
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ +G K+ N + + G DG+KTG+T ASG+N+V SA++ + L+ V++G + R
Sbjct: 256 FKFRGMKFRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRLVGVVMGEKTASLR 315
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ ASLL + + K +
Sbjct: 316 DDRMASLLDGALPSPSTATASTTPGKQPGATMTDAQPTK 354
>gi|326387759|ref|ZP_08209365.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207805|gb|EGD58616.1| Serine-type D-Ala-D-Ala carboxypeptidase [Novosphingobium
nitrogenifigens DSM 19370]
Length = 398
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 77/330 (23%), Positives = 127/330 (38%), Gaps = 8/330 (2%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ S P ++D N+G V+ P + PASLTK+MT+YV F +K K
Sbjct: 29 AAPASPESTMPQVTAPIAMMVDVNSGRVLFARDPHRRFVPASLTKIMTSYVAFELIKAGK 88
Query: 74 AMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L + S S+ ++ + L+ ++ SAND V +AE + +
Sbjct: 89 LRLDQKFVMRPETFHKWHGVGSTMFLGNNSSTSVADLLEGIVTVSANDACVVLAEGIAGS 148
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMH-YF 188
F MN +K +G+ +H+ +G + G Y +A D+ LS + T P ++
Sbjct: 149 VPGFTAMMNAEAKKIGMRDSHYNTPNGWMDQGETYVSAADLVALSTALITRHPDLYKRFY 208
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
G N N G GADG+KTGFT +G+ V S +G + +I V+ G
Sbjct: 209 GHDHATFNGIAQENHNPLYGHTPGADGVKTGFTGEAGYGFVGSVERGGRRVIMVVAGYGR 268
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEIIN 305
N R S + + F R + K Q + +V ++
Sbjct: 269 PNDRADQSRTFVEWAFSAWDSRPILTAGAKVGQAVVQGGSTRQVGLVTPRAYALAVPHGE 328
Query: 306 YNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ K K + + I +
Sbjct: 329 APRYTLSIRYKAPLTAPIVKGQEVASLIVR 358
>gi|323490220|ref|ZP_08095437.1| D-alanyl-D-alanine carboxypeptidase [Planococcus donghaensis
MPA1U2]
gi|323396116|gb|EGA88945.1| D-alanyl-D-alanine carboxypeptidase [Planococcus donghaensis
MPA1U2]
Length = 452
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 80/365 (21%), Positives = 150/365 (41%), Gaps = 37/365 (10%)
Query: 4 FLVIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ ++A+ M++ I P AE L+D +G ++ E + P AS+TK+M
Sbjct: 16 LIALLAVFMITGITPQQVNAEESLTIMAEAAILVDAESGKILYEKNAEKPLGVASMTKMM 75
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
T Y++F ++E K ++ SN F++ + T+ + + + SA
Sbjct: 76 TEYLLFEAIEEGKVAWDQEYQVTDYTYRISQDMRLSNVPFREDGSYTIKEMYEAMAIFSA 135
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HG 162
N + IAE++ TE +FV+ MN +K +GL T F+N+ G+
Sbjct: 136 NAATIGIAETIAGTESEFVELMNEKAKEMGLEETTFVNSTGLSNSSLMGMHPEGTKETDE 195
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA----VGTFLGA 213
+ AR +A L+ + D+P+ + +I + N N + + G
Sbjct: 196 NIMPARAVAKLTKILLDDYPEVLETTKIPLKMFREGTSDETRMENWNSMLPGLIYEYEGV 255
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVIL------GALDRNTRNKVSASLLSMGFYNK 267
DG+KTG T +G++ +A + D IAV++ GA R + L GF
Sbjct: 256 DGLKTGSTDFAGYSFAGTAKRDDTRFIAVVMGAVDSEGAGSYKARFDATRVLFDYGFDEF 315
Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
T + I + F +Q+ + E+V KE + + + + + + + +
Sbjct: 316 TKEELIPAGYQ-FKEQDTLEVEKGVEEKVAIAVKEPVTMMVRTADKELYQPTLVLDDSVV 374
Query: 328 LLKNK 332
Sbjct: 375 QNGKL 379
>gi|229178819|ref|ZP_04306179.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus 172560W]
gi|228604584|gb|EEK62045.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus 172560W]
Length = 416
Score = 176 bits (445), Expect = 4e-42, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 128/360 (35%), Gaps = 34/360 (9%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + A + L++ N+G ++ E D AS+TK+M+ Y+V
Sbjct: 1 MVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIA 124
+ + K + IS+ A + S + T+ + + + SAN +A+
Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170
E + E FV+ MN+ SK G+ F+N+ G+ + +ARD
Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDC 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMKTGFT 221
AIL+ R+ DFPQ ++ +I + N NW + + G DG+KTG T
Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+G + + LI+V++ A R + L GF N +
Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNVYGKDSVIKG 300
Query: 282 -------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ V + V + + + +K + I
Sbjct: 301 HETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNTEQEAPIKKGVTISKMII 360
>gi|300816637|ref|ZP_07096858.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
107-1]
gi|300530867|gb|EFK51929.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
107-1]
Length = 347
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 85/310 (27%), Positives = 140/310 (45%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRTIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KGTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + ++ K + + N +E + + + K D +
Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|120601649|ref|YP_966049.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris
DP4]
gi|120561878|gb|ABM27622.1| penicillin-binding protein 6, Serine peptidase, MEROPS family S11
[Desulfovibrio vulgaris DP4]
Length = 441
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 92/330 (27%), Positives = 157/330 (47%), Gaps = 10/330 (3%)
Query: 2 RQF-----LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
++F +V++ + + +E + L+D N+ V+ E D PASL
Sbjct: 11 KRFPGQLGIVLLVLTFVVASVCGAHASERLNVVSAFLIDQNSRRVLFEQNADAQIPPASL 70
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+++ YV ++ KA L + IS A+ S +G T++LD L + V S
Sbjct: 71 TKVISMYVALDHIRAGKASLADKVKISARAARTGGSRMFLTRGETVSLDELLMGMAVSSG 130
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND +VA+AE + + +FVQ MN ++ LG++ T F N +G+ G TTARDM L+
Sbjct: 131 NDASVAVAEHIAGSTDRFVQLMNAKARALGMTETTFRNVNGLPAAGQKTTARDMGKLAVN 190
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
T PQ + Y + + N N +G GADG+KTG+ CASG+N++++ +G+
Sbjct: 191 YLTAHPQALRYHSTRFIRHNKVITTNKNPMLGNCEGADGLKTGWVCASGYNLISTVKRGN 250
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNEVPN 291
L+AV+LGA + R + L+ G+ + + + + Y+ +L
Sbjct: 251 TRLVAVVLGAENSQVRGQEMNRLIDAGYRSLRGEGPSVAAVLPRLSPADYRIDLHKTNSL 310
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
EV +K+I +++ K
Sbjct: 311 AYAEVSKHKKKIAARKGKLRAGKTGSKQHA 340
>gi|110635386|ref|YP_675594.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
sp. BNC1]
gi|110286370|gb|ABG64429.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans
sp. BNC1]
Length = 382
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 123/317 (38%), Positives = 193/317 (60%), Gaps = 8/317 (2%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ ++++A+ S + Y L+D TG V+A+ W PASLTKLMT
Sbjct: 20 KRQVILLAVFCYSMLHLPALAGP------YVLVDVGTGRVLAQENAFQRWYPASLTKLMT 73
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
AYVVF L+ + + +P+ IS+NA++ PPS + GS +TLDNALK+L+V SANDIA
Sbjct: 74 AYVVFRELESGRLQINSPVRISQNAAKEPPSKMGYSVGSVLTLDNALKILMVLSANDIAT 133
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+AES+ +E+ FV MN ++ LG++ +HF+NAHG+ +TTARD+AIL+ ++ F
Sbjct: 134 ALAESVAGSEEAFVARMNAEAQRLGMTDSHFINAHGLPGPSQFTTARDLAILARALRAQF 193
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
PQY YF I+G+ NTN+ +G F GADGMKTG+ C+SGFN+VA+A +G+++L A
Sbjct: 194 PQYASYFSIEGIRNGKSVKENTNFLIGRFDGADGMKTGYICSSGFNLVATATRGERTLAA 253
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301
V+LGA + R +++A LL+ GF + ++ Q ++ +V +I E+C+ +
Sbjct: 254 VVLGAQSQVQRAEIAADLLTRGFETQGLGAPSIVDLRPSEQ--VTEDVADIRPEICSEEA 311
Query: 302 EIINYNTQMKEAKDKES 318
+ E + +
Sbjct: 312 VAKRMKERDDEGRLILT 328
>gi|229073057|ref|ZP_04206247.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus F65185]
gi|228710062|gb|EEL62046.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus F65185]
Length = 416
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 128/360 (35%), Gaps = 34/360 (9%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + A + L++ N+G ++ E D AS+TK+M+ Y+V
Sbjct: 1 MVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIA 124
+ + K + IS+ A + S + T+ + + + SAN +A+
Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170
E + E FV+ MN+ SK G+ F+N+ G+ + +ARD
Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDC 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMKTGFT 221
AIL+ R+ DFPQ ++ +I + N NW + + G DG+KTG T
Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+G + + LI+V++ A R + L GF N +
Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNVYGKDSVIKG 300
Query: 282 -------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ V + V + + + +K + I
Sbjct: 301 HETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNREQEAPIKKGVTISKMII 360
>gi|46581059|ref|YP_011867.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio
vulgaris str. Hildenborough]
gi|46450480|gb|AAS97127.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio
vulgaris str. Hildenborough]
gi|311234737|gb|ADP87591.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio vulgaris
RCH1]
Length = 441
Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats.
Identities = 92/330 (27%), Positives = 157/330 (47%), Gaps = 10/330 (3%)
Query: 2 RQF-----LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
++F +V++ + + +E + L+D N+ V+ E D PASL
Sbjct: 11 KRFPGQLGIVLLVLTFVVASVCGAHASERLNVVSAFLIDQNSRRVLFEQNADAQIPPASL 70
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+++ YV ++ KA L + IS A+ S +G T++LD L + V S
Sbjct: 71 TKVISMYVALDHIRAGKASLADKVKISARAARTGGSRMFLTRGETVSLDELLMGMAVSSG 130
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND +VA+AE + + +FVQ MN ++ LG++ T F N +G+ G TTARDM L+
Sbjct: 131 NDASVAVAEHIAGSTDRFVQLMNAKARALGMTETTFRNVNGLPAAGQKTTARDMGKLAVS 190
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
T PQ + Y + + N N +G GADG+KTG+ CASG+N++++ +G+
Sbjct: 191 YLTAHPQALRYHSTRFIRHNKVITTNKNPMLGNCEGADGLKTGWVCASGYNLISTVKRGN 250
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNEVPN 291
L+AV+LGA + R + L+ G+ + + + + Y+ +L
Sbjct: 251 TRLVAVVLGAENSQVRGQEMNRLIDAGYRSLRGEGPSVAAVLPRLSPADYRIDLHKTNSL 310
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
EV +K+I +++ K
Sbjct: 311 AYAEVSKHKKKIAARKGKLRAGKTGSKQHA 340
>gi|300926504|ref|ZP_07142297.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
182-1]
gi|300417465|gb|EFK00776.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
182-1]
Length = 347
Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats.
Identities = 86/310 (27%), Positives = 139/310 (44%), Gaps = 11/310 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG ++ NPASLTKLMT YVV + + +T+ ++A
Sbjct: 1 MDYTTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPV 60
Query: 94 ------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
K+G +++ + + LIV S ND VA+A+ + +++FV+ MNN ++ L L
Sbjct: 61 FVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHL 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WA 206
THF HG+ G +++A D+A+LS I P++ H + K L G N N
Sbjct: 121 KDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLL 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ DG+KTG T +GFN++ASA+ G LIAVI+GA R + + LL G N
Sbjct: 181 WDKTMNVDGLKTGHTSGAGFNLIASAVDGQHRLIAVIMGADSAKGREEEARKLLRWGQQN 240
Query: 267 KTDRKKINYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T + ++ K + + N +E + + + K D +
Sbjct: 241 FTTVQILHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAP 300
Query: 323 FEKITLLKNK 332
+
Sbjct: 301 ISAHQRVGEI 310
>gi|168186263|ref|ZP_02620898.1| penicillin-binding protein DacF [Clostridium botulinum C str.
Eklund]
gi|169295681|gb|EDS77814.1| penicillin-binding protein DacF [Clostridium botulinum C str.
Eklund]
Length = 392
Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats.
Identities = 79/337 (23%), Positives = 151/337 (44%), Gaps = 13/337 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+ +++ + N+ A + L++ TG VI E + PAS+TK+MT +
Sbjct: 15 VTLMSQFCIVNVMAADKTALDVEAKAGLLIEPTTGKVIFEKNVHEKFAPASVTKIMTMLL 74
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ K L+ + +S+NA + + + G T+++ LK + + S ND A
Sbjct: 75 TMEAVDSGKIKLSDTVVVSENAKKMGGNGSSSMLLDTGEVRTVEDLLKGVAIASGNDAAT 134
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD- 180
A+AE + +E FV+ MN ++ LG+ T F N HG+ GH T+A D++I+S +
Sbjct: 135 ALAEYIGGSESSFVEMMNKRAQELGMKDTTFKNCHGLSADGHLTSAYDISIMSRELLKHK 194
Query: 181 ---FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ I + + N N V + G DG+KTGFT + + I A+A++ +
Sbjct: 195 KILKYSGTYMETISEGRKQPIELVNHNKLVRFYKGCDGLKTGFTNEAKYCISATAVKNNI 254
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY----QQNLSNEVPNIS 293
++A+I+GA RN+ ++ L++ GF +K + ++
Sbjct: 255 RMLAIIVGAPTYKIRNRDASMLMNYGFSKFESKKVVTKDTDVEKITLDKKGEKFFFAKAK 314
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+++ + + K DK ++K ++
Sbjct: 315 DDLNLVLERGVKNKITKKCVLDKNKKE--YKKGEIIG 349
>gi|209545022|ref|YP_002277251.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532699|gb|ACI52636.1| Serine-type D-Ala-D-Ala carboxypeptidase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 420
Score = 175 bits (444), Expect = 6e-42, Method: Composition-based stats.
Identities = 91/264 (34%), Positives = 145/264 (54%), Gaps = 1/264 (0%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F + + A + F + A+ ++D TG +++++ PD PASLTKLMT Y
Sbjct: 77 FGLSVGCAAVMAGFVPRAHAQYVGQISSIVMDARTGAILSQSNPDLQRFPASLTKLMTLY 136
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ F L + L + +S +++ PS GS +T++ A+ L+ KSAND A A+
Sbjct: 137 LAFKALHAGQITLDQSVPVSAHSASMEPSKLGLMPGSYLTVEQAVLGLVTKSANDAACAL 196
Query: 124 AESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
E + ++ F M ++ LG++ T F NA G+ T+ARD+A+L+ +I T+FP
Sbjct: 197 GELMGGGDEGRFADLMTRQARALGMTRTTFRNASGLPNDEQVTSARDLALLTRQIITEFP 256
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
Y HYF + G++ PN + + + GADG+KTG+T +G N+V SAI+ + LI V
Sbjct: 257 DYYHYFSVPAFYFHGRQVPNHDPMLRIYPGADGLKTGYTTDAGRNLVTSAIRENVRLIGV 316
Query: 243 ILGALDRNTRNKVSASLLSMGFYN 266
+LGA R+ V AS+L GF
Sbjct: 317 VLGARTNPQRSAVMASILDDGFRQ 340
>gi|169831557|ref|YP_001717539.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
audaxviator MP104C]
gi|169638401|gb|ACA59907.1| Serine-type D-Ala-D-Ala carboxypeptidase [Candidatus Desulforudis
audaxviator MP104C]
Length = 376
Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats.
Identities = 86/353 (24%), Positives = 146/353 (41%), Gaps = 28/353 (7%)
Query: 4 FLVIIAMAMLSNIFPFLS--------IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
++I + L + L+D TGHV+ +PAS
Sbjct: 9 LTLLIVVFALLGPQSASAEPSADSTMKPPRVTADAAVLVDVETGHVLFAKNERQRKDPAS 68
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
LTK+MTA V + +T+S+ A S + G +TL+N LK ++
Sbjct: 69 LTKVMTAIVALEAGRPG-----DVVTVSERAARFGRGSVIDLRAGEKITLENLLKAALIM 123
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND +AIAE + FV+ MN ++ LG T FMN HG HY+TA D+A ++
Sbjct: 124 SANDSTIAIAEHVAGDYDLFVRWMNLKARQLGAHDTRFMNTHGFTHPNHYSTAADLAEIT 183
Query: 175 WRIKTDFP-----QYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNI 228
+ + + NTN + + G DG+KTG T A+G +
Sbjct: 184 RYALRIPQFAALVRTREITVYWRDSDRKRTIRNTNRLLRSDFEGIDGVKTGTTSAAGHCL 243
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-----YNKTDRKKINYIIKDFYQQ 283
+ASA + + ++AV+L + R + LL+ GF T +I ++ +
Sbjct: 244 IASATRDGRRVLAVVLHSDG---RYLDARRLLTYGFALEPVEVATRGDQITRLLVREGVR 300
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
VP + + + ++ +++ K E+ EK+ + +I +
Sbjct: 301 PDVIVVPAETVRLYIPEAQLPALEKEVRLKKTLEAPIAPGEKLGEMAFRINGR 353
>gi|150396261|ref|YP_001326728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
WSM419]
gi|150027776|gb|ABR59893.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
WSM419]
Length = 494
Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats.
Identities = 92/252 (36%), Positives = 138/252 (54%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
I +A L + + A N ++D TG V+ D PASLTK+MT Y+ F
Sbjct: 31 IFLAGLIVVLTLSAPALANSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTLYLTFE 90
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L+ + +TP+ SK AS PPS + G ++T++ A+ L+ +SAND A A+AE L
Sbjct: 91 ALEAGRINKSTPVPFSKKASAEPPSKLGVRAGRSITVEQAILSLVTRSANDSATALAELL 150
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E++F + M N ++ LG++ T + NAHG+ TTARD A L ++ FPQY Y
Sbjct: 151 GGSEQRFARMMTNKARALGMTRTTYRNAHGLPNSEQRTTARDQARLGIALRQHFPQYYDY 210
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + + N N +G G DG+KTG+T ASGFN+V SA G +S++AV++G
Sbjct: 211 FSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLGGRSIVAVVMGGT 270
Query: 248 DRNTRNKVSASL 259
+R+ L
Sbjct: 271 SGGSRDAQMRKL 282
>gi|118443387|ref|YP_878099.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
gi|118133843|gb|ABK60887.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
Length = 392
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 79/338 (23%), Positives = 153/338 (45%), Gaps = 13/338 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+ +++ + N+ + A + L++ TG +I E + PAS+TK+MT +
Sbjct: 15 VTLMSQICVVNVMAAENTALDVEAKAGLLMEPTTGKIIFEKNVHEKFAPASVTKIMTMLL 74
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ K LT + +S+NA + + + G T+++ LK + + S ND A
Sbjct: 75 TMEAVDSGKIKLTDTVVVSENAKKMGGNGSSSMLLDTGEVRTVEDLLKGVAIASGNDAAT 134
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD- 180
A+AE + +E FV+ MN ++ LG+ T F N HG+ + GH T+A D++I+S +
Sbjct: 135 ALAEYIGGSESSFVEMMNKRAQELGMKDTTFKNCHGLSKEGHLTSAYDISIMSRELLKHK 194
Query: 181 ---FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ I + + N N V + G DG+KTGFT + + I A+A++ +
Sbjct: 195 KILKYSGTYMETISEGRKQPIELVNHNKLVRFYKGCDGLKTGFTNEAKYCISATAVRDNI 254
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY----QQNLSNEVPNIS 293
++A+I+GA RN+ ++ L++ GF +K + ++
Sbjct: 255 RMLAIIVGAPTYKIRNRDASMLMNYGFSKFESKKVVAKDSDVEKITLDKKGEKFFFAKAK 314
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+++ + K DK +++ ++ N
Sbjct: 315 DDLNLVLERGTKNKITKKCVLDKGKKE--YKRGEIIGN 350
>gi|114566442|ref|YP_753596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114337377|gb|ABI68225.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 373
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 89/349 (25%), Positives = 149/349 (42%), Gaps = 26/349 (7%)
Query: 1 MRQF-----LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR F +I+ + + I ++ A PYY L+D +G +I + D AS
Sbjct: 1 MRGFSKGIRFIILLLLFMGLIASPVNAAPYISSPYYCLMDGGSGQLILSSNGDETRPVAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K+MTA + + + T+S A+ P + K +T+ LK+ +++S
Sbjct: 61 TVKMMTAILTIEYA-----GMDEEATVSSKAARTPEYSIGLKAEQRITVGELLKVALIRS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
+ND AV +AE + E F M+ + +G S T F NA G+ ++T D+A +
Sbjct: 116 SNDAAVVLAEHIAGDESLFAHLMSKKAFLIGASNTRFSNASGLPGGEQFSTCSDLAQIGR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKY------PNTNWAVGTFLGADGMKTGFTCASGFNIV 229
PQ + + K Y NTN +G++ GADG+KTG A+G +V
Sbjct: 176 Y-AQSHPQIKELVATRQSDFKHPSYSQPLRISNTNPLLGSYQGADGIKTGTANAAGKCLV 234
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
ASA + + LIAV+L + D R A LL+ GF + ++ IN + L+ +
Sbjct: 235 ASATRDGRHLIAVVLKSSD---RAGDCARLLNYGFKDSYYQQIINASTPFKELRVLNAKT 291
Query: 290 PNIS----EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
P + ++ N K+ K K + + +
Sbjct: 292 PKVKIYPARDLYLWV--GDNSPDIEKKVNMKYELQAPLSKGQEVGSLVV 338
>gi|302392427|ref|YP_003828247.1| serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
DSM 5501]
gi|302204504|gb|ADL13182.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acetohalobium arabaticum
DSM 5501]
Length = 383
Score = 175 bits (443), Expect = 7e-42, Method: Composition-based stats.
Identities = 80/322 (24%), Positives = 136/322 (42%), Gaps = 16/322 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+S ++D TG V+ PAS TK+MT + L T
Sbjct: 26 VSAKPDITARSAIVVDVKTGEVLYAKNHHERRPPASTTKIMTGILAIEN-----GNLDTE 80
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+T+S A+ S+ G T+ L+ L L++ S ND AVAIAE + + + F MN
Sbjct: 81 VTVSDRAAYTGGSSIWLTSGETLKLEELLYGLLLNSGNDAAVAIAEHIGGSVEGFAWMMN 140
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGK 198
++ +G T F N +G+ Q+GH TTA D+A+++ + + K + +G
Sbjct: 141 RKAREIGALNTTFQNPNGLPQNGHLTTAYDLALITRYALQNDTFAKIVRTVRKTISWEGH 200
Query: 199 KYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+Y NTN + F DG+KTG+T A+G +V++A ++ +++V+L +
Sbjct: 201 EYGRSLLNTNRLLRKFDKVDGVKTGYTDAAGRCLVSAASADNRQVVSVVLKSG---QMWH 257
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
S LL+ G N + I+ + EV I+ + K
Sbjct: 258 DSIKLLNYGLDNFKQIELISKDETAHTIRINEAKKEEVDLIAAKEFGIVIPQDEDVEIKK 317
Query: 312 EAKDKESHFIDFEKITLLKNKI 333
E + + + EK +
Sbjct: 318 EVRVQNDLKLPIEKGEQVGKLT 339
>gi|325127981|gb|EGC50880.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
N1568]
Length = 389
Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats.
Identities = 79/352 (22%), Positives = 142/352 (40%), Gaps = 24/352 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY--------------TLLDTNTGHVIAENYP 47
+ V++++ + + S A + ++D + +++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|325137739|gb|EGC60314.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
ES14902]
Length = 389
Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats.
Identities = 78/349 (22%), Positives = 141/349 (40%), Gaps = 18/349 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY--------------TLLDTNTGHVIAENYP 47
+ V++++ + + S A + ++D + +++
Sbjct: 5 KILPVLLSIILGISHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A+LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNISEEVCTT---QKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T + + + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKTTEQILETIQPIPAPVKKGQILGKI 353
>gi|308171901|ref|YP_003918606.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM
7]
gi|307604765|emb|CBI41136.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Bacillus amyloliquefaciens DSM 7]
gi|328551709|gb|AEB22201.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
TA208]
Length = 443
Score = 175 bits (443), Expect = 8e-42, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 141/367 (38%), Gaps = 37/367 (10%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L +S + +++ ++G ++ D AS+TK+MT Y+
Sbjct: 18 LTATCFVPMSKAEAAGNDPIDVNASAAIMIEASSGKILYSKNADKRLPIASMTKMMTEYL 77
Query: 65 VFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
+ +KE K + + + + SN +K T+ + + + SAN A
Sbjct: 78 LLEAIKEGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQAMAIYSANGAA 137
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY--------------TT 166
+A+AE L TE KFV MN +K LG++ F N+ G+V + +
Sbjct: 138 IAVAEILAGTETKFVAKMNAKAKELGMTNYDFKNSTGLVNEDLHGKQPQGEGVKEESEVS 197
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAVG----TFLGADGMK 217
A+DMA+L+ R+ TD+P+ + I + + PN N+ + + G DG+K
Sbjct: 198 AKDMALLADRLITDYPEVLKTTSIAKTKFRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLK 257
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFY-NKTDRKKIN 274
TG T ++G ++A + +I V+L A R + +L F N + +
Sbjct: 258 TGSTDSAGSCFTSTAQRNGMRVITVVLNAKGNLHTGRFDETKKMLDYAFNSNFSMKDLYP 317
Query: 275 YIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + + K N + + DK+ +K T
Sbjct: 318 EGSQVKGHKTIDVDKGKDKQVDIVTDKALSIPVKSGDEKNYKAEVTLDKKEITAPVKKGT 377
Query: 328 LLKNKIT 334
+
Sbjct: 378 KVGTLTV 384
>gi|225175400|ref|ZP_03729395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
AHT 1]
gi|225169152|gb|EEG77951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
AHT 1]
Length = 426
Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats.
Identities = 82/344 (23%), Positives = 136/344 (39%), Gaps = 23/344 (6%)
Query: 3 QFLVIIAMAMLSNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
LV+ + +L N + L+D TG V+ E PAS+TK+
Sbjct: 10 ILLVVSLIYLLINPVATWAETTAFPELNSQAAVLIDAQTGQVLFEKNMHQVLYPASITKI 69
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF---KKGSTMTLDNALKLLIVKSA 116
MT + L IT+S+ A N++ +TL+ AL L ++S
Sbjct: 70 MTGIIALEE-----GNLDDTITMSREAVFSIGRNTSHVALDVDEELTLEQALYALAIESG 124
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A IAE + + F Q MN + G T+F NAHG+ HYTTA DMA++ +
Sbjct: 125 NDAANGIAEHISGDVESFAQLMNKRAAEYGAKNTNFTNAHGLPDSDHYTTAYDMALILKQ 184
Query: 177 IKTDFPQYM------HYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCASGFN 227
+ + + + + + N N KTG+T +G
Sbjct: 185 AVKNPAFREIFSARNYEMPPTNKQPESRHFRNRNSLLSGRYEDAEILASKTGWTTLAGHT 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS- 286
+V +A Q ++ LIAV+L + DR +R + LL GF ++ + ++S
Sbjct: 245 LVTAARQENRELIAVVLNSQDRRSRYDDTIKLLDYGFNQFSEVSFSMEELTALIMPSVSF 304
Query: 287 --NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E+ NI + + + + + D E + +
Sbjct: 305 EEAEILNIEADQKMDRLLHKSLSVDDIIISHQIKDNHDNELVEV 348
>gi|301630478|ref|XP_002944344.1| PREDICTED: d-alanyl-D-alanine carboxypeptidase dacC-like, partial
[Xenopus (Silurana) tropicalis]
Length = 294
Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats.
Identities = 88/268 (32%), Positives = 136/268 (50%), Gaps = 8/268 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
Y L+D G V+A D P ASLTKLMT Y+VF L+ KK L
Sbjct: 27 ATPQPPEVAARNYLLVDVTAGQVLAAKDIDAPVEQASLTKLMTGYLVFDALRAKKIALAQ 86
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S+ A + P S + +D+ LK +IV+S ND VA+AE + + + FV M
Sbjct: 87 KLPVSERAWKMPGSRMFIDPKMQIPVDDLLKGMIVQSGNDATVALAEGVGGSVENFVHLM 146
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG++ T + N G+ + GH TTA+D+A+L R+ DFP+YMHY+ + G
Sbjct: 147 NEQARALGMTGTSYKNPEGLTEPGHSTTAKDLALLVQRLMQDFPEYMHYYATRHYAYPGT 206
Query: 199 KYPNTNWAVG---TFLGADGMKTGFTCASGFNIVASAIQ-----GDQSLIAVILGALDRN 250
N N DG+KTG+T A+G+ +VA++ + G + L++++LG N
Sbjct: 207 PKSNGNNRNTLLFRDPTVDGLKTGYTAAAGYCLVATSRREFPQLGQRRLLSIVLGTASEN 266
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIK 278
R+ S LL+ G+ K +
Sbjct: 267 ARSNESQKLLNWGYTAFDAVKLFDAGQP 294
>gi|300021591|ref|YP_003754202.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
denitrificans ATCC 51888]
gi|299523412|gb|ADJ21881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
denitrificans ATCC 51888]
Length = 360
Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats.
Identities = 105/304 (34%), Positives = 162/304 (53%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
T L + +TG V+ D W PASLTKL TAY+ F +K+ K LT I
Sbjct: 19 PITASAGPALLFELSTGKVLYSEDIDDVWYPASLTKLTTAYLAFQAIKDGKLRLTDKIPC 78
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S A+ PPS + G T+T++ AL+ +IVKSAND+ V +AE++ +E F++ MN T+
Sbjct: 79 SLVATLQPPSKAGLNVGDTLTVEQALQAVIVKSANDVTVMLAEAISGSETNFIEQMNATA 138
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ LG++ THF N +G+ G T+ARD+A ++ I TDFP+Y Y+ + + I ++ +
Sbjct: 139 QRLGMTRTHFDNTNGLPSPGQLTSARDLARIARAIVTDFPEYASYWSMPAMRIGKRRLGS 198
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + TF GADGMKTGFTC SG+N+ ASA + + L+A++LG N R SA+LL
Sbjct: 199 HNALLKTFPGADGMKTGFTCDSGYNVAASATRDGRRLVAIVLGESSGNERAVRSAALLEY 258
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
GF + N D + +++ + + + + + K
Sbjct: 259 GFQYYDWKAMFNMPTIDTLPVDPNSKGVLSVRDTVAATSCGGGHRHRGAKHRAKGKLTAK 318
Query: 323 FEKI 326
+ I
Sbjct: 319 NKAI 322
>gi|229112950|ref|ZP_04242457.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock1-15]
gi|228670493|gb|EEL25829.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock1-15]
Length = 442
Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats.
Identities = 73/375 (19%), Positives = 136/375 (36%), Gaps = 42/375 (11%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ I+ + L A + L++ N+G ++ E D
Sbjct: 12 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYEKSADESLAI 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALK 109
AS+TK+M+ Y+V + + K + IS+ A + S + T+ +
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYE 131
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+ + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 132 AMAIYSANGATIALVEQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHSE 191
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA---- 206
+ +ARD AIL+ R+ DFP+ ++ +I + N NW
Sbjct: 192 GTTLDEKNKMSARDCAILAQRLIQDFPKILNTAKIPKKTFQEGGKYPIDMANFNWMLKGL 251
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 252 IKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFAN 311
Query: 267 KTDRKKINYIIKDFYQQ-------NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ + + V + V + + + +
Sbjct: 312 FEVKNFYGKDSVIKGYETVRVANAKDKDVVVQTKQAVSLPMSKGNKDIYKKEFKVLNKEQ 371
Query: 320 FIDFEKITLLKNKIT 334
+K + I
Sbjct: 372 EAPIKKGVTISKMII 386
>gi|251797290|ref|YP_003012021.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
sp. JDR-2]
gi|247544916|gb|ACT01935.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
sp. JDR-2]
Length = 425
Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats.
Identities = 79/349 (22%), Positives = 139/349 (39%), Gaps = 34/349 (9%)
Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAETN------------------------KLPYYTLL 34
MR+ L+ + +L + P AE L+
Sbjct: 1 MRRLPGLIAMMFIILVLLAPVPVFAEEALQAPDEEQIEQPADQLAEQLPETPHSEAAILI 60
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D +G V+ PAS+TK++T +V T +T+SK A +
Sbjct: 61 DAKSGAVLFAKNETERLYPASITKIVTGIIVLEQS-----NPTDIVTVSKTARGEDGTRI 115
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
+G + + ++ +++ S ND A AIAE + T+++F + MN + LGL T+F+N
Sbjct: 116 YLAEGEQKPMLDLIEGMLINSGNDAATAIAEHIDGTKEQFAERMNEFVRKLGLWDTNFVN 175
Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---NTNWAVGTFL 211
G+ YTTARDMA ++ + + + N N +G++
Sbjct: 176 PSGLPDENQYTTARDMAKIAQYAMQNEQFRQVVATKSKPWVGEEWVSKLENHNKMLGSYD 235
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
GA G+K GFT A+G+ +V++A +GD LI VIL + K LL GF + T +
Sbjct: 236 GAIGVKNGFTQAAGYTLVSAAQRGDMELIGVILKGATDSGVYKDMTQLLDYGFAHFTSMQ 295
Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ K + + + + + + +++
Sbjct: 296 VMAADEKRTFVTRDTGKPVEFIADKPFYVTIKDGVEPTVAVDSNGKAYV 344
>gi|309379439|emb|CBX22006.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 388
Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats.
Identities = 76/348 (21%), Positives = 142/348 (40%), Gaps = 17/348 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFL-------------SIAETNKLPYYTLLDTNTGHVIAENYPD 48
+ ++I + + ++ P + ++D + ++ D
Sbjct: 5 KALSILIPIILAASPAPTALSSNRLPVRAASSPQTPETLAAAHIVIDLQSRQTLSAKNID 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
P PA+L +LMTAY+VF LK + I ++A + S + G ++ D L
Sbjct: 65 APVEPAALAQLMTAYLVFKNLKSGNIRPEETLKIRESAWKSEGSRMFVRPGGSVRTDTLL 124
Query: 109 KLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
K +IV SAND A+ +A + + FV+ MN +++LG+ T F N G+ + G +TA
Sbjct: 125 KGMIVLSANDAALTLAGRLGNGSIENFVKQMNEEARHLGMKNTVFKNPTGLSREGQVSTA 184
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+D+A+LS + DFP+Y F IK + + + N N + G +G+K G T + G+N
Sbjct: 185 KDLAMLSEALMRDFPEYYPLFSIKSFKFENIEQNNRNTLLYRDSGVNGLKAGHTESGGYN 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ S + ++ + LG+ R ++ LL+ + K + Q
Sbjct: 245 LAVSYSGNGRHILVITLGSESAEIRAADTSKLLNRALQSFDTPKIHSAGEIVTKIQVFGG 304
Query: 288 EVPNISE---EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + T + + + K +L
Sbjct: 305 SKKTVRAGFPKAAYITVPHDGVKTAEQILETIQPLRAPVRKGQVLGKI 352
>gi|258514292|ref|YP_003190514.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Desulfotomaculum acetoxidans DSM 771]
gi|257777997|gb|ACV61891.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Desulfotomaculum acetoxidans DSM 771]
Length = 409
Score = 175 bits (442), Expect = 9e-42, Method: Composition-based stats.
Identities = 78/345 (22%), Positives = 134/345 (38%), Gaps = 22/345 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ + II + L + A L+D ++ PAS TK+
Sbjct: 4 KHIIGIIFLIYLLAFAAPVFADDAPDITGMTAVLMDAQNMQILYNKDMQERMYPASTTKI 63
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+T + K + I +S A+ +N ++G +TL + L L++ S+ND
Sbjct: 64 LTGIIAIEKGK-----MDDLIPVSWEAANTEGTNIGLQEGEKLTLRDLLYALLLSSSNDA 118
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A AIAE K+ F MN +K +G +HF N HG+ HYTTA D+A+++
Sbjct: 119 AEAIAEHYGKSADNFAVMMNQKAKEIGAVHSHFTNPHGLPDEDHYTTAYDLALIARYAMQ 178
Query: 180 DFP-----QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + + K N N + + GA G+KTG+T A+G I A +
Sbjct: 179 NDKFREIVREKEITIARVDPEGQKYMVNHNKLLSRYEGAIGIKTGYTVAAGQCIAAEVKR 238
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPN 291
D+ LIAV+L + N + +L + GF + + + + V
Sbjct: 239 DDRELIAVVLKSEG-NDLWTDTENLFNYGFNSFRNIYLVKRGQVMGQAEVSNGSLKAVSL 297
Query: 292 ISEEV---CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+++ K ++ K+ +K L I
Sbjct: 298 VTDRDFTWNLPTKNGNELKRRLVLNKN---IKAPLKKGQKLGELI 339
>gi|304405771|ref|ZP_07387429.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
curdlanolyticus YK9]
gi|304345014|gb|EFM10850.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
curdlanolyticus YK9]
Length = 437
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 69/347 (19%), Positives = 131/347 (37%), Gaps = 26/347 (7%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ L++ TG V+ E D PAS+TK+MT Y+V +K +
Sbjct: 41 ATASAGTGNPLGINAKAAILMEPTTGQVLYELNADEALPPASMTKMMTEYIVLEEIKAGR 100
Query: 74 AMLTTPITISKN--ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
T ++ S S +G T+ + V SA+D +A+A + +
Sbjct: 101 LTWDTVVSTSAEAATVPPDGSQVYLAEGEKHTVKELYIAMAVGSASDATIALAVQIGGST 160
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
FV MN T++ LGL++ HF G+ + +ARDMA L+ I + P+++ Y I
Sbjct: 161 AGFVDKMNETAQKLGLTSAHFTGPSGL-EETTVISARDMAKLASTIILNDPEFLTYSSIP 219
Query: 192 GLEIKGKKY---PNTNWAVGT-----------FLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + + N NW +G+ + G DGMKTG+ A+G+ +
Sbjct: 220 RYKFRERDQGELINYNWMLGSNKNSEELKSFAYPGVDGMKTGYIGAAGYCFTGTVEVNGL 279
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-------DFYQQNLSNEVP 290
++V++ + R + +A L G+ + + + + + +
Sbjct: 280 RYVSVVMNTKTKQARFRETAKLYDFGYASFEKKTIVAPKSEVESVKTVKITKGKSKSVPV 339
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKE--SHFIDFEKITLLKNKITK 335
+V K+ + + ++ L +
Sbjct: 340 ITGTDVSFLVKKGTEAKATVLKTNLLPEKQLVAPIKQGQKLGTVTYE 386
>gi|296116795|ref|ZP_06835401.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii
ATCC 23769]
gi|295976596|gb|EFG83368.1| D-alanyl-D-alanine carboxypeptidase [Gluconacetobacter hansenii
ATCC 23769]
Length = 402
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 91/266 (34%), Positives = 145/266 (54%), Gaps = 3/266 (1%)
Query: 3 QFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ +++A +++ +F + A+ ++D TG V++++ D PASLTKLM
Sbjct: 33 KVSLLVAGGLVAGLFGGAGQARAQYVGQISSIVMDARTGTVLSQSNADLRRFPASLTKLM 92
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L+ + L + +S +A+ PS + GS +T++ A+ L+ KSAND A
Sbjct: 93 TLYLTFKALRAGRITLDQVVPVSAHAASMEPSKLGLRPGSYLTVEEAILALVTKSANDAA 152
Query: 121 VAIAESLCKTEK-KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ E L + F Q M + L ++ T F NA G+ T+ARD+A L+ I
Sbjct: 153 CALGEFLGAGSESTFAQIMTQQAARLSMNDTSFRNASGLPNEEQMTSARDLATLARHIAL 212
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
DF +Y HYF + +G+ PN + + ++ GADG+KTG+T +G N+V SA++ + L
Sbjct: 213 DFGEYYHYFAVPAFYFRGRYVPNHDPMLKSYPGADGLKTGYTAVAGHNLVTSAVRDNVRL 272
Query: 240 IAVILGALDRNTRNKVSASLLSMGFY 265
I V+LGA TRN V A LL F
Sbjct: 273 IGVVLGAPSNETRNAVMADLLDDSFR 298
>gi|229127885|ref|ZP_04256871.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-Cer4]
gi|228655650|gb|EEL11502.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus BDRD-Cer4]
Length = 416
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 70/360 (19%), Positives = 128/360 (35%), Gaps = 34/360 (9%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + A + L++ N+G ++ E D AS+TK+M+ Y+V
Sbjct: 1 MVVTIGKAAAETDPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIA 124
+ + K + IS+ A + S + T+ + + + SAN +A+
Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170
E + E FV+ MN+ SK G+ F+N+ G+ + +ARD
Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDC 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMKTGFT 221
AIL+ R+ DFPQ ++ +I + N NW + + G DG+KTG T
Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+G + + LI+V++ A R + L GF N +
Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNVYGKDSVIKG 300
Query: 282 -------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ V + V + + + ++ + I
Sbjct: 301 HETVRVANAKEKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNMEQGAPIKEGGTISKMII 360
>gi|300022145|ref|YP_003754756.1| serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
denitrificans ATCC 51888]
gi|299523966|gb|ADJ22435.1| Serine-type D-Ala-D-Ala carboxypeptidase [Hyphomicrobium
denitrificans ATCC 51888]
Length = 583
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 103/336 (30%), Positives = 165/336 (49%), Gaps = 9/336 (2%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R+ + + + A + +LD N+G V+ + D +PASLTK+MT
Sbjct: 3 RRAFAFALLCLAFSGAVPARAAAAPQKHAAFVLDVNSGAVLHNDDGDAIRHPASLTKMMT 62
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
Y+ F ++ + ++ ITIS A+ PS K G+ +++ +++K ++ KSANDIAV
Sbjct: 63 LYLTFELIESSRLKMSDMITISDRAANAAPSKLDLKPGAQISVADSIKAVVTKSANDIAV 122
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+AE + TE FV+ MN +++LG++ THF N G+ H +TA DMAIL+ R+ DF
Sbjct: 123 ALAEKIGGTEANFVRLMNTRARDLGMTKTHFENPSGLPDDDHVSTAHDMAILALRLMDDF 182
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P + F + +GK Y N N + TF G DG+KTG+T ASGFN+V S +G + L+
Sbjct: 183 PAHYQVFSTRTFAYRGKSYRNHNTMLNTFQGVDGIKTGYTRASGFNLVTSVHRGGRHLVG 242
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRK-----KINYIIKDFYQQNLSNEVPNISEEV 296
V+ G RN LL+ F + K + + ++ V
Sbjct: 243 VVFGGSTAAARNAEMRVLLTKAFTRASTAKTRKPMLVAKLKGAPKAAPRPSQRTPKPTNV 302
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ E ++ + A+ K I + K K
Sbjct: 303 AAAEPEPLSAKPAPRFAEAKSRET----PIQIFKVK 334
>gi|315122117|ref|YP_004062606.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
Liberibacter solanacearum CLso-ZC1]
gi|313495519|gb|ADR52118.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
Liberibacter solanacearum CLso-ZC1]
Length = 282
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 203/265 (76%), Positives = 229/265 (86%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
FL+ I +L I+PF +IAE N LPYYTLLD+NTGHVIAEN PD WNPASLTKLMTAY
Sbjct: 11 FLIRITALILIGIYPFQAIAEENNLPYYTLLDSNTGHVIAENNPDKLWNPASLTKLMTAY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
VVFSFL++KK L TPITISKNASE PPSNSTFKKGS +TLDNALKLLIVKSANDIAVAI
Sbjct: 71 VVFSFLEQKKITLETPITISKNASEQPPSNSTFKKGSILTLDNALKLLIVKSANDIAVAI 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AESLC TE++FV+HMN++++ LGL T FMN+HGVVQ+GHYTTARDM ILSWRIKT F Q
Sbjct: 131 AESLCNTEEEFVKHMNDSAQTLGLLRTKFMNSHGVVQNGHYTTARDMTILSWRIKTHFSQ 190
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
Y HYFQIKGL+IK KKYPNTNWA+G FLGADGMKTGFTCASGFNIVASA QG++SLI V+
Sbjct: 191 YAHYFQIKGLKIKNKKYPNTNWAIGIFLGADGMKTGFTCASGFNIVASASQGNRSLITVV 250
Query: 244 LGALDRNTRNKVSASLLSMGFYNKT 268
LGALDR++RN++S LLS GF K
Sbjct: 251 LGALDRDSRNQISEKLLSAGFDKKN 275
>gi|312113074|ref|YP_004010670.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhodomicrobium
vannielii ATCC 17100]
gi|311218203|gb|ADP69571.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhodomicrobium
vannielii ATCC 17100]
Length = 367
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 105/325 (32%), Positives = 166/325 (51%), Gaps = 10/325 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+L + FL A+ L + TG V+ D PW PASLTKLMTAY+ F ++
Sbjct: 11 LILCGMAAFLFGAQGAVAGPALLTEPATGLVLYAEDADLPWRPASLTKLMTAYLTFEAIR 70
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ + +T + + PPS G+ + +D A+K LIVKSAND+A+ +AE + +
Sbjct: 71 DGRLSPEDMLTSTALSRSQPPSKFGLPLGAQIKVDLAIKALIVKSANDVAIMLAEKIGGS 130
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG---------HYTTARDMAILSWRIKTDF 181
+ FV MN T+K LG++ T F+N +G+ Q TTARDMA+LS I +F
Sbjct: 131 SEAFVDQMNRTAKRLGMTNTKFVNPNGLPQFNPDGTETPEQAVTTARDMALLSNMILKEF 190
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
PQY F + + + + + N + ++ GADGMKTGF CA+G+N+VASA + + L+A
Sbjct: 191 PQYTPIFSMTEVRVGNRLLTSHNGILKSYDGADGMKTGFVCAAGYNVVASATRNGRQLVA 250
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP-NISEEVCTTQ 300
V+LG R +A+L GF + + + + + P ++ VC+ +
Sbjct: 251 VVLGERSSGARTIRAAALFEHGFEIYPWKAVLAPTLATWPVETPEGAQPADMRGIVCSGR 310
Query: 301 KEIINYNTQMKEAKDKESHFIDFEK 325
K ++ + K + H K
Sbjct: 311 KPAVSAKQKSKRPASQPGHGASTAK 335
>gi|325144238|gb|EGC66544.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M01-240013]
Length = 389
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 79/352 (22%), Positives = 142/352 (40%), Gaps = 24/352 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY--------------TLLDTNTGHVIAENYP 47
+ V++++ + + S A + ++D + +++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|325293678|ref|YP_004279542.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
gi|325061531|gb|ADY65222.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
Length = 433
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 85/257 (33%), Positives = 134/257 (52%), Gaps = 1/257 (0%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ A+A I + + ++D NTG V+A D +PASLTK+MT Y+ F
Sbjct: 14 VFALAFFCAILSLQASPAQ-AGYAHFIMDANTGKVLAAQNADVLNHPASLTKMMTLYMTF 72
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L + I +S+N + PS ++G T T+ A+ +IVKSAND+A + +
Sbjct: 73 EALHAGRIRWDQKIRMSRNGAAVIPSKLYVREGQTFTVREAVYGMIVKSANDMAEGMGDH 132
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
L +E +F Q M ++ LG++ T F NA G+ TTARDMA L ++ DFP+
Sbjct: 133 LGGSEAQFAQMMTRKARQLGMTKTVFRNASGLPSKSQVTTARDMAKLGLALQRDFPKEYG 192
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
F ++ +GK+ N + + G DG+KTG+T ASGFN+V++ + ++ V+LG
Sbjct: 193 LFAMESFSFRGKRIRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAINHNGRRVVGVVLGG 252
Query: 247 LDRNTRNKVSASLLSMG 263
R+ A+LL
Sbjct: 253 KTARGRDAQMAALLDKA 269
>gi|159184788|ref|NP_354511.2| penicillin-binding protein [Agrobacterium tumefaciens str. C58]
gi|159140076|gb|AAK87296.2| penicillin-binding protein [Agrobacterium tumefaciens str. C58]
Length = 499
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 85/255 (33%), Positives = 135/255 (52%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
V + +A + A+ + ++D +G V+ PD PASLTK+MT Y+
Sbjct: 28 FVALTLAAAFIAATSVQTAKADPKYAGIVIDAKSGKVLYGEDPDGLRYPASLTKMMTLYL 87
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F L + L + +T+S NA++ PPS + G ++T++ A+ L+ +SAND+A A+
Sbjct: 88 TFEALNSGRISLDSRVTVSANAAKEPPSKLGVRAGGSVTVEQAILALVTRSANDMATALG 147
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E L +E +F + M ++ LG++ T + NA+G+ TTARD A L ++ FPQY
Sbjct: 148 EHLGGSEDRFARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQY 207
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
YF + + N N VGT G DG+KTG+T A+G N+ SA +S++AV+L
Sbjct: 208 YGYFSTRTFNFGKQVIGNHNRLVGTVKGVDGIKTGYTRAAGSNLATSAQLDGRSIVAVVL 267
Query: 245 GALDRNTRNKVSASL 259
G R+ L
Sbjct: 268 GGRSSAARDATMRKL 282
>gi|296534465|ref|ZP_06896895.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
ATCC 49957]
gi|296265208|gb|EFH11403.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
ATCC 49957]
Length = 305
Score = 175 bits (442), Expect = 1e-41, Method: Composition-based stats.
Identities = 85/236 (36%), Positives = 132/236 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D TG + PASLTK+MT Y++F +++ + L+T I +S++A+
Sbjct: 46 SAIVMDAATGEELVSVNAGASRYPASLTKMMTLYMMFEAMQQGRMTLSTRIPVSRHAAGQ 105
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
PS K GS+++ +A+ L+ KSAND+A A+AE L +E +F + M +++LG+
Sbjct: 106 EPSKLGLKPGSSISARDAILALVTKSANDVAAAVAEHLGGSEVQFGRLMTRRAQSLGMRD 165
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T F NA G+ TTARDMA+LS + FPQ+ YF + +G+ + N +
Sbjct: 166 TSFRNASGLPDANQVTTARDMALLSRALIRHFPQHYAYFNARSFSWRGQTIRSHNRVLAE 225
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ GADG+KTGF ASGFN+ +SA +G LI V+ G R+ +L GF
Sbjct: 226 YDGADGLKTGFIRASGFNLASSAERGGVRLIVVVFGGATSRERDDHVMALFDRGFQ 281
>gi|188584694|ref|YP_001916239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179349381|gb|ACB83651.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 416
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 81/350 (23%), Positives = 153/350 (43%), Gaps = 27/350 (7%)
Query: 2 RQFLVIIAMAMLSNIF-----------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
++ ++ + ++ N F P + L++ +G V+ +
Sbjct: 9 KKVIITLIFLLMINTFTVSDVTAKQLYPQEFETPEIEAETAVLMEFESGKVLYDQEMHRQ 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+PAS TK+MTA ++ L + +S+NA S+ +T + L
Sbjct: 69 MHPASTTKIMTALLLIENA-----SLREQVVVSENAFGTDGSSMYLNLDEKITTRDLLYG 123
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
L+V+SAND AVAIAE + + + F MN+ +K LG T+F N HG+ + H TTA D+
Sbjct: 124 LMVRSANDAAVAIAEYVAGSVENFADMMNSRAKELGAKNTNFKNPHGLTEENHKTTAYDL 183
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKK-------YPNTNWAVGTFLGADGMKTGFTCA 223
+++ + P++ + + + + N N + + GA G+KTG+T +
Sbjct: 184 GVIAREALKN-PKFRSVASTRRITLDWPEEEDEDRLLVNRNELLADYPGALGVKTGYTRS 242
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFY 281
+ VA+A + +LIAV+L + RN + + LL GF + N +I
Sbjct: 243 ANQTFVAAAERDGMTLIAVVL-STSRNRLFEDAKELLDFGFEAFEQVEIFEQNDVITSTE 301
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+N + E+ I EE + + + + +++ E+ + +
Sbjct: 302 VENSNQELELIVEESLSLPIPKMATEIEQRVDLEEQLLKAPIEEGEQVGS 351
>gi|241203383|ref|YP_002974479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240857273|gb|ACS54940.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 427
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 96/323 (29%), Positives = 153/323 (47%), Gaps = 8/323 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR+ + L+ P ++A +LD TG V+A D +PASLTK+M
Sbjct: 1 MRKLWAAVLTVTLAVSAPLAALA----GNASLILDARTGKVLAAENADTLNHPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A
Sbjct: 57 TLYLTFEALKRGKIAWDTPIKMSKYAASRPPTKLGVKAGGTITVREAVYGMIVKSANDAA 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+ E L +E F + M ++ LG+S T F+NA G+ TTARDM+ L+ + +
Sbjct: 117 SAMGEKLAGSESGFARVMTAKARQLGMSRTVFVNASGLPDGRQVTTARDMSTLAIALMKN 176
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+P F +G+ N + + G DG+KTG+T ASGFN+V++ G++ ++
Sbjct: 177 YPNEYRLFSTASFNFRGRTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVV 236
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTD----RKKINYIIKDFYQQNLSNEVPNISEEV 296
V+LG +R+ A LL + R + K+ + + + ++
Sbjct: 237 GVVLGGRTARSRDAKMAGLLDRYLGRASSSGGARLVASVGAKETVEVASAADASDVPVPF 296
Query: 297 CTTQKEIINYNTQMKEAKDKESH 319
++ + A D
Sbjct: 297 NAPRQVDDLAAKSLAYADDAVVP 319
>gi|121634652|ref|YP_974897.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
meningitidis FAM18]
gi|120866358|emb|CAM10101.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
meningitidis FAM18]
Length = 389
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 79/352 (22%), Positives = 142/352 (40%), Gaps = 24/352 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY--------------TLLDTNTGHVIAENYP 47
+ V++++ + + S A + ++D + +++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|154684528|ref|YP_001419689.1| DacA [Bacillus amyloliquefaciens FZB42]
gi|154350379|gb|ABS72458.1| DacA [Bacillus amyloliquefaciens FZB42]
Length = 443
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 77/363 (21%), Positives = 141/363 (38%), Gaps = 37/363 (10%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+S + +++ ++G ++ D AS+TK+MT Y++
Sbjct: 22 CFVPMSKAEAAGNDPIDVNASAAIMIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEA 81
Query: 69 LKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+KE K + + + + SN +K T+ + + + SAN A+A+A
Sbjct: 82 IKEGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQAMAIYSANGAAIAVA 141
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY--------------TTARDM 170
E L TE KFV MN +K LG++ F NA G+V + +A+DM
Sbjct: 142 EILAGTETKFVAEMNAKAKELGMTNYDFKNATGLVNEDLHGKQPQGEGVKEESEVSAKDM 201
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAVG----TFLGADGMKTGFT 221
A+L+ R+ TD+P+ + I + + PN N+ + + G DG+KTG T
Sbjct: 202 ALLADRLITDYPEVLKTTSIAKTKFRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLKTGST 261
Query: 222 CASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFY-NKTDRKKINYIIK 278
++G ++A + +I V+L A R + +L F N + + +
Sbjct: 262 DSAGSCFTSTAQRNGMRVITVVLNAKGNLHTGRFDETKKMLDYAFNSNFSMKDLYPEGSQ 321
Query: 279 -------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
D + + + K N + + DK+ +K T +
Sbjct: 322 VKGHKTIDVEKGKDKQVDIVTDKALSIPVKSGDEKNYKAEVTLDKKEITAPVKKGTKVGT 381
Query: 332 KIT 334
Sbjct: 382 LTV 384
>gi|303247169|ref|ZP_07333443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
fructosovorans JJ]
gi|302491328|gb|EFL51216.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
fructosovorans JJ]
Length = 366
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 90/345 (26%), Positives = 150/345 (43%), Gaps = 10/345 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE----TNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ + ++ + L + + D TG + PD PAS+
Sbjct: 1 MRRIMFLLIVLCLIGPKTAFPAKHHSSGKLAVKAALVADYGTGKIFYSQDPDRRIAPASV 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MT Y+VF + +A + + +S+ A S + G T+TLD ++ + V S
Sbjct: 61 TKVMTMYLVFDMVASGQASFSDKVKVSRRADATGGSTMNLRAGETVTLDELMRGMAVASG 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND AVA+AE +V+ MN ++ LG++ T F +G+ G TTARD+ L+
Sbjct: 121 NDAAVAVAEHFGGV-PAWVKRMNAKARQLGMTRTTFKTPNGLPAPGQLTTARDLMKLAVS 179
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+PQ + Y + G + NTN +G G DG+KTGF ASGFNI+A+A +G
Sbjct: 180 YLRHYPQALRYHSTTTINHCGAVHANTNRLLGVCEGMDGIKTGFVNASGFNIIATAKRGK 239
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296
+IAV+LG RN+ + +L F D + + + +++
Sbjct: 240 TRIIAVVLGGRSSQVRNRETERILDASFEGSVDSMLAKADVAPAKSSVKRAKSHHRGKKI 299
Query: 297 -CTTQKEIINYNTQMKEAKDKESHFIDFE----KITLLKNKITKK 336
+ + + + H + K +K +KK
Sbjct: 300 RVADSGRHEKISAKRGASARIDGHKASVKSSRHKAAKVKKAPSKK 344
>gi|325132290|gb|EGC54983.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M6190]
Length = 389
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 78/352 (22%), Positives = 141/352 (40%), Gaps = 24/352 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY--------------TLLDTNTGHVIAENYP 47
+ V++++ + + S A + ++D + +++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPSDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|225181453|ref|ZP_03734896.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
AHT 1]
gi|225167851|gb|EEG76659.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
AHT 1]
Length = 406
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 77/336 (22%), Positives = 133/336 (39%), Gaps = 11/336 (3%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+F VII + +L + L+++ TG V+ E PAS+TK++T
Sbjct: 5 KFRVIITVVVLLFYTGTAMAEPVVQSTAAILINSRTGEVLWEKNSHQQMFPASITKILTT 64
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
++ E S+ A + S+ ++G +T+++ L L+++SAND +V
Sbjct: 65 ILLLENAAE-----DEVAVASELAEKTRGSSLYLRRGQELTVEDLLYALMLRSANDGSVV 119
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
AE + + F Q MN ++ G + F N HG+ H TTA DMA+++ +
Sbjct: 120 AAELVSGSVDSFAQLMNQKARQAGAINSTFTNPHGLPDENHLTTAYDMAMITRYAMQNQR 179
Query: 183 QY----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
I E + N + T+ G G+KTG+T +G V +A +
Sbjct: 180 FRDLAATQRHTIVWPEGEDSYLINRIPLLSTYEGMLGIKTGYTTPAGRTFVGAAQRDGLE 239
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
LI V+L A N + +LL GF N T + + + + ++
Sbjct: 240 LITVVLQA-SGNELWDDTVALLDYGFDNFTMVQPVVQGDIMHTTEVRFGDAVSLQAADSF 298
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+N E K E K + +
Sbjct: 299 ELTRPVNNKEVDMEIKVAE-VQAPVNKGDHIGEVVI 333
>gi|229079541|ref|ZP_04212079.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock4-2]
gi|228703766|gb|EEL56214.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock4-2]
Length = 416
Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 128/360 (35%), Gaps = 34/360 (9%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + A + L++ N+G ++ E D AS+TK+M+ Y+V
Sbjct: 1 MVVTIGKAAAETDPAIDVEAGSAILIEENSGKILYEKNADESLAIASMTKMMSEYLVHEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIA 124
+ + K + IS+ A + S + T+ + + + SAN +A+
Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170
E + E FV+ MN+ SK G+ F+N+ G+ + +ARD
Sbjct: 121 EQIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLEEKNKMSARDC 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMKTGFT 221
AIL+ R+ DFPQ ++ +I + N NW + + G DG+KTG T
Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+G + + LI+V++ A R + L GF N +
Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFEVKNVYGKDSVIKG 300
Query: 282 -------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ V + V + + + +K + I
Sbjct: 301 HETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNREQEAPIKKGVTISKMII 360
>gi|158423216|ref|YP_001524508.1| putative D-alanyl-D-alanine carboxypeptidase precursor
[Azorhizobium caulinodans ORS 571]
gi|158330105|dbj|BAF87590.1| putative D-alanyl-D-alanine carboxypeptidase precursor
[Azorhizobium caulinodans ORS 571]
Length = 629
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 85/231 (36%), Positives = 137/231 (59%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D NTG V+ E D +PASLTK+MT Y++F L+ + L + + +S +A+
Sbjct: 123 AAIVVDGNTGKVLYEENADSLRHPASLTKIMTLYMLFEQLQAGRLKLDSDLPVSAHAASQ 182
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
P+ + GST+ +++A+K ++ +SAND AV I E++ TE F + M ++ LG+S
Sbjct: 183 SPTKLNLRPGSTIEVEDAIKAVVTRSANDAAVVIGEAIGGTESNFAEMMTRKARALGMSN 242
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T F NA G+ G TTARD+++L I+ FP+ YF + +G+ N N +
Sbjct: 243 TTFRNASGLPNPGQVTTARDLSVLGRAIQDRFPREYRYFSTRAFVYRGETIGNHNRLMLR 302
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
G DG+KTG+T ASGFN+V S + D+ L+ V+LG ++R++ AS+L
Sbjct: 303 MEGVDGIKTGYTNASGFNLVTSLHRDDRFLVGVVLGGSSASSRDQRMASIL 353
>gi|159185157|ref|NP_355279.2| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
[Agrobacterium tumefaciens str. C58]
gi|159140428|gb|AAK88064.2| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
[Agrobacterium tumefaciens str. C58]
Length = 431
Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats.
Identities = 86/257 (33%), Positives = 135/257 (52%), Gaps = 1/257 (0%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ A+ I + + ++D NTG V+A D +PASLTK+MT Y+ F
Sbjct: 14 VFALTFFCAILSLQASPAQ-AGYAHFIMDANTGKVLAARNADVLNHPASLTKMMTLYMTF 72
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L + IT+SKN + PS ++G T T+ A+ +IVKSAND+A + +
Sbjct: 73 EALHAGRLRWDQKITMSKNGASVIPSKLYVRQGQTFTVREAVYGMIVKSANDMAEGMGDH 132
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
L +E +F + M ++ LG+S T F NA G+ TTARDMA L ++ DFP+
Sbjct: 133 LGGSEARFAEMMTRKARQLGMSKTVFRNASGLPSKSQVTTARDMARLGLALQRDFPKEYG 192
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
F ++ +GK+ N + + G DG+KTG+T ASGFN+V++ + ++ V+LG
Sbjct: 193 LFAMESFSFRGKRIRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAINHNGRRVVGVVLGG 252
Query: 247 LDRNTRNKVSASLLSMG 263
+R+ A+LL
Sbjct: 253 KTARSRDAQMAALLDKA 269
>gi|90417678|ref|ZP_01225590.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
SI85-9A1]
gi|90337350|gb|EAS51001.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
SI85-9A1]
Length = 364
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 72/316 (22%), Positives = 126/316 (39%), Gaps = 8/316 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D TG V+ D P+ PASL K+MT +VF+ +K+ L T +S+
Sbjct: 5 ETTAREALLVDGETGTVLFAKNADAPFPPASLAKMMTMEIVFAAIKDGTLTLDTEFPVSE 64
Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+A S + S + + ++ I++SAND A+ IAE + +E F + MN
Sbjct: 65 HAWRTGGAPSRTSTMFAELKSQVPVSALIRGAIIQSANDAAIVIAEGMEGSEAAFAERMN 124
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ LG+ + F N G+ Y TARD+ L+ +++ +P+ + E
Sbjct: 125 ARARELGMINSRFANPTGLPADDQYVTARDLITLARHLRSTYPELYAIYAEPAFEWNKIF 184
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N + +GADG++TG+T ASGF++V + G + + + G R + L
Sbjct: 185 QRNRNPLLSMEIGADGIETGYTEASGFSLVGATSHGGRDTLLAVSGLETAGDRASEARKL 244
Query: 260 LSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
L + S V + E + +
Sbjct: 245 LLWARESFESETLFPAGQIVGSANVFGGESGSVALAATEAVEALVPADAPELVSLQIRYL 304
Query: 317 ESHFIDFEKITLLKNK 332
E + + +
Sbjct: 305 EPLIAPIAEGQTVASL 320
>gi|209551182|ref|YP_002283099.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209536938|gb|ACI56873.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 377
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 114/297 (38%), Positives = 175/297 (58%), Gaps = 2/297 (0%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
FL+ + L+D TG V+ W PASLTKLMT Y VF ++ + L T
Sbjct: 25 FLASVPLAAANPHILVDVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIRAGQISLDT 84
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
P+ +SK A+ P + FK G +TLD+ALK+L+VKSANDIAVA+AE++ T++ FV M
Sbjct: 85 PVVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAIGGTQEGFVTRM 144
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++G +
Sbjct: 145 NGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFALEGFTNGQQ 204
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
P+ N +G F GADGMKTGF CASGFN + SA + +++++V+LG R +A+
Sbjct: 205 NVPSLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTIVSVVLGTDSLAARADATAN 264
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
LL GF + + ++ + Q +V +IS ++C+ + I T+ + +
Sbjct: 265 LLQKGFTTQFPGNETLGSLRPYGQGQD--QVTDISADICSAKGAKIRSETRDEVGRM 319
>gi|153009349|ref|YP_001370564.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
ATCC 49188]
gi|151561237|gb|ABS14735.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
ATCC 49188]
Length = 469
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 83/318 (26%), Positives = 145/318 (45%), Gaps = 7/318 (2%)
Query: 8 IAMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+ +A+++ + ++D NTG + + D PASLTK+MT Y+
Sbjct: 20 LLLAVVTGCSTASTTIPAIAASDRYAAIVIDANTGKTLFASNADAQRYPASLTKMMTLYM 79
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+F ++ + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 LFEAMQAGRMNKDTRIPVSAYAAARPPTKIGFRSGQSIRAEDAALAMITKSANDVATAVG 139
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + +E++F Q M ++ LG+ T F NA G+ +TTARDMAILS ++ FP
Sbjct: 140 EYIGGSEERFAQMMTAKARRLGMRNTTFRNASGLPNMAQHTTARDMAILSIALRQHFPNE 199
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
YF + +G+ N +G G DG+KTG+T ASG+N+ +S + L+AV++
Sbjct: 200 FSYFSRRSFVFRGQTINGHNRLLGRVEGVDGIKTGYTNASGYNLASSVSLDGRRLVAVVM 259
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
G +R+ L+ + S ++ + +
Sbjct: 260 GGNTGASRDAHMTQLI----RKYLPMATRSRNAAPLVAMRNDAPQVVASIDLPKAKNAPV 315
Query: 305 NYNTQMKEAKDKESHFID 322
Q+ D ++
Sbjct: 316 PVTRQVAAVDDIINNESG 333
>gi|303327144|ref|ZP_07357586.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
3_1_syn3]
gi|302863132|gb|EFL86064.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
3_1_syn3]
Length = 256
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 79/246 (32%), Positives = 128/246 (52%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L++ NTG V+ E D PASLTKLM+ ++ +K + L + +S+ A+
Sbjct: 4 RSAILVNLNTGRVLYEQSADTAIPPASLTKLMSMFLTLDAVKAGRISLNRKVKVSRQAAA 63
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S+ + G + L L + V S ND A+ +A+ + + FV+ MN ++ LG+
Sbjct: 64 TGGSSMHLRAGERVPLVRLLTGMAVASGNDAAMTVAQHVHGNSRTFVRQMNRKARALGMR 123
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
T F N G+ G TTARDM LS P M + + +G+ NTN +G
Sbjct: 124 RTLFKNPTGLPAAGQKTTARDMMTLSRAYLKAHPDAMRFHGTRFFLHRGRTMRNTNALLG 183
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G +G+KTG+T ASG+NIV +A +G L+AV+LG ++ R+ + L+ GF + +
Sbjct: 184 SVAGVNGLKTGWTVASGYNIVITAQRGKTRLLAVVLGGNSKDRRDISARRLIEAGFRHPS 243
Query: 269 DRKKIN 274
K++
Sbjct: 244 SPKQVQ 249
>gi|169351113|ref|ZP_02868051.1| hypothetical protein CLOSPI_01892 [Clostridium spiroforme DSM 1552]
gi|169292175|gb|EDS74308.1| hypothetical protein CLOSPI_01892 [Clostridium spiroforme DSM 1552]
Length = 380
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/316 (23%), Positives = 140/316 (44%), Gaps = 8/316 (2%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
L+D ++ ++ + D PAS TK+MT ++F + KK +T SK A
Sbjct: 30 NASGAILIDADSKQILYDKNADKKLFPASTTKIMTMIIMFEAINNKKISFDDQVTTSKYA 89
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ S ++G M+L++ K + + SAND +VA++E + + KFV+ MN +K L
Sbjct: 90 ASMGGSQVYLEEGENMSLEDMFKSIAIASANDASVAVSEYIAGSTNKFVEMMNQKAKELN 149
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD------FPQYMHYFQIKGLEIKGKKY 200
L THF N G+ + HYT D+A+++ + ++ I+ +
Sbjct: 150 LKNTHFENVTGLHDNNHYTCPYDLAMMASYLIKIGGNKLLSVTSLYDSYIREDTKQSFWL 209
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN + + G DG+KTG+T +G+ +V +A + Q L+ V++ + RN+ +LL
Sbjct: 210 VNTNKLLKLYDGVDGLKTGYTKEAGYCLVTTAKRDGQRLVGVVMKESEPKKRNEEMCNLL 269
Query: 261 SMGFYNKTDRKKINY--IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
G N II+ + N N+ + + + + +
Sbjct: 270 DYGLNNYKREIIYKKDSIIEKHVVDKMDNLTINVVCKEDIAYIKAKANDQKYTTKIVYKD 329
Query: 319 HFIDFEKITLLKNKIT 334
+ + +K ++
Sbjct: 330 NLLPVKKGDIVATLTV 345
>gi|297617197|ref|YP_003702356.1| serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
lipocalidus DSM 12680]
gi|297145034|gb|ADI01791.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophothermus
lipocalidus DSM 12680]
Length = 401
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 78/341 (22%), Positives = 136/341 (39%), Gaps = 19/341 (5%)
Query: 4 FLVIIAMAMLSNIFPFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
++ + A+L + P + A Y L+D TG V+ P AS TK+MTA
Sbjct: 33 LVLALTFALLFILSPGKAEAAPYVTSQAYCLVDLTTGQVLGGKNVMQPRPVASTTKVMTA 92
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ + L +S A+ + MT+++ LK +++SAND +V
Sbjct: 93 ILALEYA-----GLKEVAVVSPKAARTESG-MGLRPQDKMTIEDLLKAALLESANDASVV 146
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +E F MN + +G THF NA G+ H +T D+A+++ +
Sbjct: 147 LAEHVAGSEDMFAYLMNKKAWAIGAYHTHFENASGLPDKEHLSTCYDLAVITRYALRNQV 206
Query: 183 QY-----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ G+K NTN +G++ GA G+KTG T A+G ++ +A +G++
Sbjct: 207 FEKLVATRQAVIKQPGYPGGRKIYNTNKLLGSYEGAFGVKTGTTDAAGKCLIGAAQRGNR 266
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISE 294
L+AV+L + R LL GF + T K ++ + EV +
Sbjct: 267 KLVAVVLRS---WDRYADCQRLLDWGFTSFTREKVVDKSNMFKVLRVNKGTRIEVTVYPD 323
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ K + + +
Sbjct: 324 RDVYLWLSQDKMGLE-KVVDVDYQPTAPLKTGQKIGELEIR 363
>gi|325292859|ref|YP_004278723.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
gi|325060712|gb|ADY64403.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
Length = 480
Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats.
Identities = 84/255 (32%), Positives = 134/255 (52%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
V + +A + A+ + ++D TG V+ PD PASLTK+MT Y+
Sbjct: 4 FVALTLAAAFITATSVGTAQADPKYAGIVIDAKTGKVLYGEDPDGLRYPASLTKMMTLYL 63
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
F L + L + + +S NA++ PPS + G ++T++ A+ L+ +SAND+A A+
Sbjct: 64 TFEALNSGRISLDSKVPVSANAAKEPPSKLGVRAGGSITVEQAILALVTRSANDMATALG 123
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + +E +F + M ++ LG++ T + NA+G+ TTARD A L ++ FPQY
Sbjct: 124 EYIGGSEDRFARMMTAKARALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQY 183
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
YF + + N N VGT G DG+KTG+T A+G N+ SA +S++AV+L
Sbjct: 184 YGYFSTRTFNFGKQVIGNHNRLVGTVRGVDGIKTGYTRAAGSNLATSAQLDGRSIVAVVL 243
Query: 245 GALDRNTRNKVSASL 259
G R+ L
Sbjct: 244 GGRSSAARDATMRKL 258
>gi|83308700|emb|CAJ01610.1| conserved hypothetical protein [Methylocapsa acidiphila]
Length = 540
Score = 174 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 103/254 (40%), Positives = 154/254 (60%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
M++ + + + + +++ +G V+ E++ PW PASLTKLMT YV ++E
Sbjct: 1 MVAALCAGTTASAPAQAAPAIVVEYPSGAVLYEDHATQPWYPASLTKLMTVYVALKAVRE 60
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ L TP+ +S A+ PPS F+ G+ +TL NA+K+L+VKSAND+AV IAE + +
Sbjct: 61 HRLTLDTPLAVSARAASMPPSKMGFRPGTLVTLGNAMKMLMVKSANDLAVTIAEGISGSV 120
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ F MN + +LGL +HF+N +G+ H ++ARD A+L+ + + FP+ F I
Sbjct: 121 EAFADEMNEAAASLGLRQSHFVNPNGLPNPQHISSARDFAVLAIALYSTFPEQADLFSIG 180
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
L + G N N +G + G DGMKTGFTCA+GFN+VASA QG + LIAVILGA +
Sbjct: 181 ALRLGGDIITNHNNLLGRYPGVDGMKTGFTCAAGFNVVASATQGGRKLIAVILGAPNVAQ 240
Query: 252 RNKVSASLLSMGFY 265
R +A+L GF
Sbjct: 241 RTIKAAALFDRGFS 254
>gi|291557282|emb|CBL34399.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
Length = 409
Score = 174 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/339 (22%), Positives = 135/339 (39%), Gaps = 15/339 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+A+ M S + + + + +TG V+ E+ AS+TKLM
Sbjct: 34 FTLAVVMQGASLTAFSEGDVIEADSITKAAIVTEVSTGQVLYEHNSHERLPMASVTKLMC 93
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ +++ + T IT + A+ S G M+ + ++ +++ SAND V
Sbjct: 94 LLIWAEEMEKGTFGMDTVITATARANAMDGSVIWLNVGEEMSAYDMIRSVVIASANDACV 153
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+ E + TE+ FV+ MN ++ LG+S TH+ N G HYT+A D AILS +++
Sbjct: 154 AVCEYIAGTEEMFVERMNKRAQELGMSDTHYDNCVGFDSDTHYTSAYDTAILSA-AVSEY 212
Query: 182 PQYMHYFQIKGLEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
Y +F + + + + NTN + + G G KTG T +G + A +G+
Sbjct: 213 DCYNEFFATRLDYVREGERQTQLLNTNKLMQRYDGIIGGKTGTTDKAGCCLAVWAKRGNM 272
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK------KINYIIKDFYQQNLSNEVPN 291
L AV LG + R LL+ GF + + + + +
Sbjct: 273 KLCAVALGCKESEQRFTACTDLLNYGFSGFELYRTAVDSDVLTPVTVTEGLEKQAEVRVK 332
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + EK+ ++
Sbjct: 333 RLNTIVIPKGSSKRIEYTHTVVDSLSAPVQYGEKVGEVR 371
>gi|228921188|ref|ZP_04084518.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228838504|gb|EEM83815.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 416
Score = 174 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 70/360 (19%), Positives = 128/360 (35%), Gaps = 34/360 (9%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + A + L++ N+G ++ E D AS+TK+M+ Y+V
Sbjct: 1 MVVTIGKAAAETVPAIDVEAGSAILIEANSGKILYEKNADESLAIASMTKMMSEYLVHEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIA 124
+ + K + IS+ A + S + T+ + + + SAN +A+
Sbjct: 61 VDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKELYEAMAIYSANGATIALV 120
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDM 170
E + E FV+ MN+ SK G+ F+N+ G+ + +ARD
Sbjct: 121 EEIAGKEVNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGYHLEGTTLDEKNKMSARDC 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMKTGFT 221
AIL+ R+ DFPQ ++ +I + N NW + + G DG+KTG T
Sbjct: 181 AILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWMLKGLIKQYEGVDGLKTGTT 240
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+G + + LI+V++ A R + L GF N +
Sbjct: 241 PEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYGFANFKVKNVYGKDSVIKG 300
Query: 282 -------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ V + V + + + ++ + I
Sbjct: 301 HETVRVANAKDKDVVVQTKQAVSLPMPKGNKDIYKKEFKVSNMEQEAPIQEGVTISKVII 360
>gi|304321612|ref|YP_003855255.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis
HTCC2503]
gi|303300514|gb|ADM10113.1| D-alanyl-D-alanine carboxypeptidase [Parvularcula bermudensis
HTCC2503]
Length = 423
Score = 174 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 96/280 (34%), Positives = 150/280 (53%), Gaps = 4/280 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ L+ I A + + + + ++ +TG V+ + Y P PASLTK+MT
Sbjct: 9 KSLLITIIFATVLSPLAAHANPK----YAAYIIHADTGDVLFDRYSTEPRYPASLTKMMT 64
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
Y++F ++E + TT + +SK AS P S K G+T+ +D A++ L++KSAND+A
Sbjct: 65 LYLLFEAIEEGRVSRTTDMKVSKRASLQPASKLGVKSGTTIDVDTAIRALVIKSANDVAT 124
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
AE L +E KF + M +++LG+ T F NA G+ TTARDMAILS R+ DF
Sbjct: 125 VTAEHLAGSEAKFARLMTQKARDLGMRQTVFRNASGLPDDRQVTTARDMAILSQRLVQDF 184
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P + HYF + G+ Y + N GADG+KTG+T ASG+N+ + +GD LI
Sbjct: 185 PDFFHYFDDDSFQWGGRTYKSHNKVTQDLKGADGLKTGYTRASGYNLATTVRRGDHRLIG 244
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
++LG TRN +++ + + + R + I
Sbjct: 245 IVLGGRSGRTRNAHMIEIMNKAYADISARPSLVKSILHVK 284
>gi|46201033|ref|ZP_00055930.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
magnetotacticum MS-1]
Length = 419
Score = 174 bits (439), Expect = 2e-41, Method: Composition-based stats.
Identities = 85/245 (34%), Positives = 128/245 (52%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
++D TG V+ PD PASLTK+MT +++F L + + + T
Sbjct: 14 QPAQAGRYASIVIDAQTGSVLHAANPDARSYPASLTKVMTLFLLFDELDSGRIRMDSKFT 73
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
S +A+ PS + G T++++N + L+ KSAND AV AE + TE KF Q M
Sbjct: 74 ASAHAAAQSPSKLGLEPGETISVENLILALVTKSANDAAVVAAEGVGGTESKFAQMMTRK 133
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
++ LG+ T + NA G+ G +T RD AIL+ + P Y YF + +G+
Sbjct: 134 AQALGMRNTVYRNASGLPDTGQVSTVRDQAILARALIRSHPGYYKYFSTRQFVYEGQPIN 193
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N + + GADG+KTG+ ASGFN+++SA +GDQ +I V+ G +R+ A LL
Sbjct: 194 THNRLMLRYQGADGIKTGYIHASGFNLISSAKRGDQRIIGVVFGGATATSRDNHMAQLLD 253
Query: 262 MGFYN 266
GF
Sbjct: 254 KGFAK 258
>gi|325130023|gb|EGC52816.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
OX99.30304]
Length = 389
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 80/328 (24%), Positives = 138/328 (42%), Gaps = 11/328 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ + P L ET + ++D + +++ + P PA+LT+LMTAY+VF +K
Sbjct: 30 LTVHAAPTLQTPETLTA-AHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKS 88
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKT 130
+ I ++A S + G T++ D LK +I SAND A+ +A +
Sbjct: 89 GNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGS 148
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+ FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F I
Sbjct: 149 IENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSI 208
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + K + N N + +G+K G T + G+N+ S + ++ + LG+
Sbjct: 209 KSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAE 268
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEII 304
TR ++ LL+ K Q + + KE
Sbjct: 269 TRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAK 328
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 329 MAEQILET---IQPIPAPVKKGQILGKI 353
>gi|218767989|ref|YP_002342501.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
meningitidis Z2491]
gi|121051997|emb|CAM08306.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
meningitidis Z2491]
gi|319410238|emb|CBY90578.1| D-alanyl-D-alanine carboxypeptidase (DD-peptidase;
DD-carboxypeptidase; CPase; PBP5) [Neisseria
meningitidis WUE 2594]
Length = 389
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 78/352 (22%), Positives = 139/352 (39%), Gaps = 25/352 (7%)
Query: 3 QFLVIIAMAMLSNIFPFLSIA---------------ETNKLPYYTLLDTNTGHVIAENYP 47
+ L ++ +L + + ++D + +++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNRPTAHAAPTFQTPETLTAAHIVIDLQSKQILSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|283850365|ref|ZP_06367654.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
FW1012B]
gi|283574391|gb|EFC22362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio sp.
FW1012B]
Length = 365
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 84/267 (31%), Positives = 136/267 (50%), Gaps = 3/267 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
MR+ + ++ + L S ++ + + + +G V+ PD PAS+TK
Sbjct: 1 MRRVIFLLMILCLVGPKTAFSARQSGKLPVKAAMVAEYGSGRVLFTQDPDKRIAPASVTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT Y+VF L +A L+ + +S+ A S + G +TLD ++ + V S ND
Sbjct: 61 VMTMYLVFDALAAGRASLSDKVKVSRRADATGGSTMNLRAGEVVTLDELMRGMAVASGND 120
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
AVAIAE +V MN ++ LG+++T F +G+ G TTARD+ L+
Sbjct: 121 AAVAIAEHFGGV-PHWVGMMNEKARELGMTSTTFKTPNGLPAPGQLTTARDLMKLATSYL 179
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+PQ + Y + G + NTN +G G DG+KTG+ +SG+NI+A+A +GD
Sbjct: 180 RRYPQALRYHSTTEINHCGAVHGNTNRLLGVCEGVDGIKTGYVGSSGYNIIATAKRGDTR 239
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFY 265
+IAV+LG + RN + +L F
Sbjct: 240 IIAVVLGGRTKQARNNATTRILDASFS 266
>gi|328909969|gb|AEB61565.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Bacillus amyloliquefaciens LL3]
Length = 418
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 75/359 (20%), Positives = 140/359 (38%), Gaps = 37/359 (10%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+S + +++ ++G ++ D AS+TK+MT Y++ +KE
Sbjct: 1 MSKAEAAGNDPIDVNASAAIMIEASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIKEG 60
Query: 73 KAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
K + + + + SN +K T+ + + + SAN A+A+AE L
Sbjct: 61 KVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQAMAIYSANGAAIAVAEILA 120
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY--------------TTARDMAILS 174
TE KFV MN +K LG++ F N+ G+V + +A+DMA+L+
Sbjct: 121 GTETKFVAKMNAKAKELGMTNYDFKNSTGLVNEDLHGKQPQGEGVKEESEVSAKDMALLA 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAVG----TFLGADGMKTGFTCASG 225
R+ TD+P+ + I + + PN N+ + + G DG+KTG T ++G
Sbjct: 181 DRLITDYPEVLKTTSIAKTKFRAGTDDEMDMPNWNFMLKGLVSEYPGVDGLKTGSTDSAG 240
Query: 226 FNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFY-NKTDRKKINYIIKDFY- 281
++A + +I V+L A R + +L F N + + +
Sbjct: 241 SCFTSTAQRNGMRVITVVLNAKGNLHTGRFDETKKMLDYAFNSNFSMKDLYPEGSQVKGH 300
Query: 282 ------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + + K N + + DK+ +K T +
Sbjct: 301 KTIDVDKGKDKQVDIVTDKALSIPVKSGDEKNYKAEVTLDKKEITAPVKKGTKVGTLTV 359
>gi|307943474|ref|ZP_07658818.1| penicillin-binding protein [Roseibium sp. TrichSKD4]
gi|307773104|gb|EFO32321.1| penicillin-binding protein [Roseibium sp. TrichSKD4]
Length = 446
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 93/260 (35%), Positives = 151/260 (58%), Gaps = 1/260 (0%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ ++ FLS ++ + L+D +G V+ E W PASLTK+MTAYV
Sbjct: 1 MFASLFGLFCFFLSSPTKAEIGAHILIDAKSGDVLYERQSTRKWYPASLTKIMTAYVTLK 60
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+++++ +T+P+ SKN+ PPS FK G+ +T+D ALK++++KSAND+AVA+ E++
Sbjct: 61 AVRDERITMTSPVVQSKNSISEPPSKMGFKVGTQLTVDAALKIIMIKSANDVAVALGEAV 120
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F+ MN +K LG+ T F+N HG+ + +TARDMA+L+ DFP+
Sbjct: 121 SGSEAAFIAEMNREAKRLGMRNTRFVNPHGLPDNAQVSTARDMALLARAFWYDFPEARQI 180
Query: 188 FQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ G++ K + N GA+GMKTG+ C SG+N+ A+ + ++LIAV+LGA
Sbjct: 181 YKYPGIKFGRKPLRSANRFFLQRVPGANGMKTGYICNSGYNVAATVTRRGRTLIAVVLGA 240
Query: 247 LDRNTRNKVSASLLSMGFYN 266
R ++ L+ GF
Sbjct: 241 RSGLERTALTRELMDKGFKK 260
>gi|219669686|ref|YP_002460121.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
hafniense DCB-2]
gi|219539946|gb|ACL21685.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
hafniense DCB-2]
Length = 379
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 76/345 (22%), Positives = 132/345 (38%), Gaps = 31/345 (8%)
Query: 6 VIIAMAMLSNIFPFLS------------IAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
V + +++ + P + + L+D TG ++ + P
Sbjct: 11 VCVLISLSLSAAPVYAQTTDTNQGLIPTSSLAITADAAVLMDGATGDILYDKNAHKQRPP 70
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK++TA + K + +S+ A+ S G + L + +V
Sbjct: 71 ASTTKILTAILGLELGK-----PDELVVVSEKAAAVGESTIHLDPGEKILLYELVTGAMV 125
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
KS ND VAIAE + TE+ FV+ MN + LG THF N +G+ H +TA D+A++
Sbjct: 126 KSGNDACVAIAEQIAGTEEDFVRLMNQKAFLLGAKNTHFENTNGLPSKNHVSTAYDLALM 185
Query: 174 SWR----IKTDFPQYMHYFQIKGLEIK-GKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ + +I +E NTN + + DG+KTG T A+G +
Sbjct: 186 ARYGLQIPAFTSITRLKETEIHFIEPDFFMNLRNTNKLLWNYPYTDGVKTGTTTAAGKCL 245
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNL 285
VA+A + + LIAV+L A D R + LL GF +
Sbjct: 246 VAAATKDGRQLIAVVLHAPD---RFGDAQKLLEWGFNETETLNYVQAGETIEFPAENSEP 302
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ + + ++ ++ + + L
Sbjct: 303 IKAFAQNPIQISILKTDKEKLEKKIVWTRE---PGLPIKAGDSLG 344
>gi|329851344|ref|ZP_08266101.1| D-alanyl-D-alanine carboxypeptidase family protein [Asticcacaulis
biprosthecum C19]
gi|328840190|gb|EGF89762.1| D-alanyl-D-alanine carboxypeptidase family protein [Asticcacaulis
biprosthecum C19]
Length = 457
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 92/261 (35%), Positives = 140/261 (53%), Gaps = 4/261 (1%)
Query: 13 LSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + P + A+ ++D TG V D PASLTK+MT Y+ F L
Sbjct: 1 MILVSPLKARAQDLSGDARYSAIVVDAVTGEVFYSAKADSARYPASLTKIMTLYMAFDAL 60
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
I +S+NA+ P K G T+ +D+A++L+ + SAND+AVA+AE +
Sbjct: 61 AMGTLKPDDTIVMSRNAAGQSPVKVYLKAGETIDVDSAMRLVALYSANDLAVALAEKIGG 120
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
TE++F M ++ LG+ T F+NA G+ ++ARDMAIL+ + D+PQY YF
Sbjct: 121 TEERFAALMTIKAQELGMGQTRFVNASGLPDPRQLSSARDMAILARAVMRDYPQYYDYFS 180
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ +G+ Y N N G DGMKTGFT A+G+N+VAS ++ LIAV+LG ++
Sbjct: 181 LPNYTFRGRTYVNHNPL-RNMPGVDGMKTGFTNAAGYNLVASQVKDGHRLIAVMLGGNNK 239
Query: 250 NTRNKVSASLLSMGFYNKTDR 270
+ R + L++ GF R
Sbjct: 240 SQRREHVTFLMNTGFDIFDRR 260
>gi|261409755|ref|YP_003245996.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
sp. Y412MC10]
gi|261286218|gb|ACX68189.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
sp. Y412MC10]
Length = 336
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 80/278 (28%), Positives = 129/278 (46%), Gaps = 19/278 (6%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ +++ + I K L+ +TG V+ + D P PAS++K+MT +V
Sbjct: 46 FGVILIAVFIARVFIPPPIKASSAILIHADTGRVLYAMHADLPLPPASMSKMMTELLVLD 105
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
++ + + +S+ A+E P S +G TL + LI+ SAND AVAIAE L
Sbjct: 106 AVRSGQHAWDENVPVSRYAAEVPGSAIGMHEGERYTLKQLFEALIIHSANDAAVAIAEHL 165
Query: 128 CKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQH------------GHYTTARDMAILS 174
+E +FV+ MN +K +GLS T F NA G+ TARD A+L+
Sbjct: 166 GGSEARFVETMNARAKEIGLSDRTVFANASGLPAADLVPFAEAASEGDTVMTARDSAMLA 225
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWA----VGTFLGADGMKTGFTCASGFNI 228
+ P + + L + K+ TN + G DG KTG+T ++G+
Sbjct: 226 RWLVNKHPDLLEVTSQRDLPVPQKELSLHTTNLMLPGEPHAYQGNDGFKTGYTASAGYCF 285
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+A +G LI+V++G D + R + L+ GF
Sbjct: 286 TGTASRGGNRLISVVMGTGDADQRFTETRKLMDYGFDR 323
>gi|226312616|ref|YP_002772510.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC
100599]
gi|226095564|dbj|BAH44006.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC
100599]
Length = 406
Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats.
Identities = 90/337 (26%), Positives = 140/337 (41%), Gaps = 24/337 (7%)
Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKL--------PYYTLLDTNTGHVIAENYPDHP 50
MR L +++ + +L N+ + AE + L+D TG V+ E P
Sbjct: 1 MRFLLTNLLVVVMVLFNLGMPSAFAEESSSLEPNTLIGQSAILIDATTGQVLFEKNPHEK 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PAS+TK+ T L +T+SK A + ++G +TL N L
Sbjct: 61 LYPASITKIATGIYAIEK-----GNLDDTVTVSKKARREEGTRVYLEEGEKITLRNLLYG 115
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN-LGLSATHFMNAHGVVQHGHYTTARD 169
L++ S ND AIAE + +T ++F +N K +G++ T+F N HG+ HYTTA D
Sbjct: 116 LLMNSGNDAGTAIAEHMSQTTERFAVDLNAYLKEKVGVTETNFANPHGLHDPNHYTTAAD 175
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLGADGMKTGFTCASG 225
MA +S P + K L G+ + N N + + GA G+K GFT +
Sbjct: 176 MAKISRY-AMKNPVFREIVGTKRLPWHGQTWETVLVNHNKLLREYEGATGIKNGFTDQAM 234
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQ 282
+V SA +G+ LIAV + A K LL GF + +
Sbjct: 235 HTLVGSAKRGETELIAVTMKASTSANAYKDIKKLLDFGFQGFETKFIAKKGDSFSEVAVP 294
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N S E++ T + + ++K H
Sbjct: 295 GNTSVVTFTAKEDLYATVPKGVEPLVELKTDGSLSVH 331
>gi|220920397|ref|YP_002495698.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Methylobacterium nodulans ORS 2060]
gi|219945003|gb|ACL55395.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Methylobacterium nodulans ORS 2060]
Length = 498
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 90/303 (29%), Positives = 155/303 (51%), Gaps = 3/303 (0%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D +G ++ D +PAS+TK+MT Y++F L+ + L TP+ IS NA+
Sbjct: 49 AAMVVDVKSGRILHAVNEDALRHPASITKVMTLYLLFEQLERGRMSLDTPLEISANAARQ 108
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
PS + G+T+T++ A+K L+ KSAND+A AI E++ +E F + M + LG++
Sbjct: 109 APSKLGLRPGATITVEEAIKALVTKSANDVACAIGENIAGSEGAFAEMMTRKAHALGMTR 168
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
TH+ NA G+ TTARD+ IL+ I+ FP+Y YFQ + +G+ N N +G
Sbjct: 169 THYANASGLPDSDQITTARDLTILARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNHLLGR 228
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
G DG+KTG+T SGFN++ SA D+ ++AV+LG +R+ + L+ N
Sbjct: 229 VEGVDGIKTGYTRDSGFNLMTSARINDRHIVAVVLGGKSVASRDAIMTRLVE---ANLPK 285
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ ++E+ T+ + + + + + S + + L
Sbjct: 286 AYAGARTTAPVVEVAERPRPAVVAEKPVATRTLVAAADGEDESIETTASTGRPGQPLDLN 345
Query: 330 KNK 332
++
Sbjct: 346 PSR 348
>gi|121602162|ref|YP_988381.1| D-alanyl-D-alanine carboxypeptidase family protein [Bartonella
bacilliformis KC583]
gi|120614339|gb|ABM44940.1| D-alanyl-D-alanine carboxypeptidase family protein [Bartonella
bacilliformis KC583]
Length = 362
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 118/326 (36%), Positives = 189/326 (57%), Gaps = 12/326 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR+ + ++ ++ L++A + +D G ++ N W PASLTKLM
Sbjct: 1 MRKLFYKFFLFLVLSMMSRLALAHP-----FISVDLANGRILEHNQAFERWYPASLTKLM 55
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
AY+VF + + T ITISK A++ PP S++K G T+TLD AL + +VKSAND+A
Sbjct: 56 MAYIVFRAMSTGEISPNTSITISKAAAQAPPHRSSYKTGYTITLDAALSITLVKSANDLA 115
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+AI+E++ ++K FV+ MN ++ LG+ THF NA G+ +Y+TARD+A+L+ +I+ +
Sbjct: 116 IAISEAIAGSQKAFVKQMNAHAQRLGMFGTHFANASGLPDLNNYSTARDIALLAVQIRRE 175
Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF I ++ + N+N +G F G DGMKTGF CASGFNIVASA + +++
Sbjct: 176 FPQYTHYFSIPAIDFGDNQKIQYNSNKLIGRFDGIDGMKTGFICASGFNIVASATRNNRT 235
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+IAVILGA + + R +A LL GF K ++ + + ++ ++ +++CT
Sbjct: 236 IIAVILGAENIDEREAKAAELLHEGFTKKGSPTSTLATLEPYGTKIT--QITDMRQQICT 293
Query: 299 TQK---EIINYNTQMKEAKDKESHFI 321
+ +Y+T+ +
Sbjct: 294 PEAGNIRRSSYDTEGNITLNSPLIAA 319
>gi|262168638|ref|ZP_06036333.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27]
gi|262022756|gb|EEY41462.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae RC27]
Length = 339
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 81/301 (26%), Positives = 136/301 (45%), Gaps = 9/301 (2%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKG 99
AE D +PASLTK+MT+YV+ +K L + ISKNA S + G
Sbjct: 2 AEKEMDTKLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVG 61
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+T+ + + + +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+
Sbjct: 62 TTVKVSDLNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLD 121
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKT 218
Y+T D+A+L + D P+ + + G N N + DG+KT
Sbjct: 122 DPNLYSTPYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKT 181
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII- 277
G T +G+N+V+SA +G+ L+AV++G + N R S LLS GF
Sbjct: 182 GHTSGAGYNLVSSATEGNMRLVAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGET 241
Query: 278 ---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + + + ++ T + +K+ +K ++
Sbjct: 242 FVNETIWMGDKDTIALGVDKDTYVTLPRGQAKDLTASFVLEKQ-LKAPLKKGDVVGTLYY 300
Query: 335 K 335
+
Sbjct: 301 Q 301
>gi|304391580|ref|ZP_07373522.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Ahrensia sp.
R2A130]
gi|303295809|gb|EFL90167.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Ahrensia sp.
R2A130]
Length = 480
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 96/329 (29%), Positives = 154/329 (46%), Gaps = 8/329 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52
MR + L F + + ++D TG VI +
Sbjct: 13 MRLVFTLFLSTFLVLSFQLMMTGDAEAKRKKKGNPRYAAYVIDAKTGKVIFSRNGNARRY 72
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PASLTK+MT Y+VF +K + T + +SK S PS + G ++++D A+K LI
Sbjct: 73 PASLTKMMTLYLVFEDMKAGRINGKTRLVMSKKGSLQQPSKIGLRAGQSISMDQAVKSLI 132
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
KSAND+A AI L +E +F + M ++ LG+S T F NA+G+ G TTA DMA
Sbjct: 133 TKSANDVATAIGGQLSGSEVEFAKRMTRKARQLGMSRTTFKNANGLTARGQVTTAADMAK 192
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
L ++ FP+ F + ++ ++Y N N +G G DG+KTG+T ASGFN+V+S
Sbjct: 193 LGMALREHFPRKYKLFSTRVFKLGKRRYGNHNKLLGRVRGVDGIKTGYTRASGFNLVSSV 252
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
G +S++AV++G +RN +L+ + K+ + + + I
Sbjct: 253 QTGGRSIVAVVMGGRSGRSRNAHMQTLIKRHLRKASRGKQRRVVARATGSRGSVATKKVI 312
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFI 321
+ T + + + + K S I
Sbjct: 313 VAKAVTPTPSPLAARSSARSPQQKISSRI 341
>gi|110633932|ref|YP_674140.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
sp. BNC1]
gi|110284916|gb|ABG62975.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans
sp. BNC1]
Length = 382
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 74/322 (22%), Positives = 129/322 (40%), Gaps = 10/322 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + K LLD TG ++ D P+ PASL KLMTA ++ + LK + +
Sbjct: 21 ARAQSFETKAAQAFLLDGETGAILYSKNADEPFPPASLAKLMTAELLLNALKTGRISMQR 80
Query: 79 PITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+S++A + S + ++ L+ +IV+ AND + +AE + +E
Sbjct: 81 EFEVSEHAWRTGGAPSGTATMFAAVNSRVPIEALLQGIIVQQANDGCIILAEGMAGSENA 140
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F + M ++ LGL+ + F+N G+ G T R++A+LS + ++P+Y YF +
Sbjct: 141 FARLMTERARALGLTRSVFVNPTGLPAEGQQVTVREIALLSRHLWREYPEYYRYFGQEDF 200
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
E + N + GADG+ GFT G+ I AS + + L AV+ G + R
Sbjct: 201 EWNRIRQR--NRVLRLGTGADGLALGFTEGQGYAIAASMERNGKRLFAVLAGIPEEQERP 258
Query: 254 KVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+ + +L GF R+ V + +
Sbjct: 259 EETRKMLEWGFSAFERRQLFTAGEIIGDANVYGGAKGTVALRAAGPLWALVPTGESQSFS 318
Query: 311 KEAKDKESHFIDFEKITLLKNK 332
E+ + N
Sbjct: 319 ARIVYNGPISAPVEEGVAVGNL 340
>gi|15676773|ref|NP_273918.1| penicillin-binding protein [Neisseria meningitidis MC58]
gi|7226115|gb|AAF41288.1| penicillin-binding protein [Neisseria meningitidis MC58]
gi|316985771|gb|EFV64715.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis H44/76]
gi|325139970|gb|EGC62499.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
CU385]
gi|325200438|gb|ADY95893.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
H44/76]
Length = 389
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 78/352 (22%), Positives = 140/352 (39%), Gaps = 25/352 (7%)
Query: 3 QFLVIIAMAMLSNIFPFLSIA---------------ETNKLPYYTLLDTNTGHVIAENYP 47
+ L ++ +L + + ++D + +++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNRPTVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A+LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|89895253|ref|YP_518740.1| hypothetical protein DSY2507 [Desulfitobacterium hafniense Y51]
gi|89334701|dbj|BAE84296.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 379
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 76/345 (22%), Positives = 131/345 (37%), Gaps = 31/345 (8%)
Query: 6 VIIAMAMLSNIFPFLS------------IAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
V + +++ + P + + L+D TG ++ + P
Sbjct: 11 VCVLISLSLSAAPVYAQTTDTNQGLIPTSSLAITADAAVLMDGATGDILYDKNAHKQRPP 70
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK++TA + K + +S+ A+ S G + L + +V
Sbjct: 71 ASTTKILTAILGLELGK-----PDELVVVSEKAAAVGESTIHLDPGEKILLYELVTGAMV 125
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
KS ND VAIAE + TE+ FV+ MN + LG THF N +G+ H +TA D+A++
Sbjct: 126 KSGNDACVAIAEQIAGTEEDFVRLMNQKAFLLGAKNTHFENTNGLPNKNHVSTAYDLALM 185
Query: 174 SWR----IKTDFPQYMHYFQIKGLEIK-GKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ + +I +E NTN + + DG+KTG T A+G +
Sbjct: 186 ARYGLQIPAFTSITRLKETEIHFIEPDFFMNLRNTNKLLWNYPYTDGVKTGTTTAAGKCL 245
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNL 285
VA A + + LIAV+L A D R + LL GF +
Sbjct: 246 VAGATKDGRQLIAVVLHAPD---RFGDAQKLLEWGFNETETLNCVQAGETIEFPAENSEP 302
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ + + ++ ++ + + L
Sbjct: 303 IKAFAQNPIQISILKTDKEKLEKKIVWTRE---PGLPIKAGDSLG 344
>gi|222086014|ref|YP_002544546.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
radiobacter K84]
gi|221723462|gb|ACM26618.1| D-alanyl-D-alanine carboxypeptidase protein [Agrobacterium
radiobacter K84]
Length = 403
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 67/351 (19%), Positives = 134/351 (38%), Gaps = 21/351 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+R+F V + P ++ A K +++ +TG ++ D +PAS
Sbjct: 2 LRRFTVAFFFLVGIGCLPAVAQQAPPPAFDTKATQAFMVEASTGTILLAKNADQQISPAS 61
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKL 110
L KLMT V+F +K + L T +S+NA S S + + + ++
Sbjct: 62 LAKLMTLDVIFDAIKRGEISLDTEYPVSENAWRTGGAPSRTSTMFAVLKSRVRVGDLIQG 121
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT----- 165
+ V+ AND + +AE + +EK+F + M ++ +G+ F N+ G+
Sbjct: 122 IAVQQANDSCIVLAEGISISEKEFARRMTARAREIGMPRAVFTNSTGLPDANDQNGGGKV 181
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+ R++ L+ ++ ++P + Y N N + +G DG+ GF G
Sbjct: 182 SVRELVTLAQDLQQNYPDFYKYLAQPDFTWNKIFQRNRNPLLPLNIGVDGLGLGFADGEG 241
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD------ 279
++IVAS + + L + G R + S +L G N ++
Sbjct: 242 YSIVASIERDGRRLFLALGGLKTDKERTEESRRVLEWGLSNFKSQRIFADGEVIGNASVY 301
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
Q+ + + +V + ++ + + L+
Sbjct: 302 GGAQSTVGLLAKMPVDVYVANDNPDRLSARIVYRWPLTAPVAAGYEAGTLR 352
>gi|291530422|emb|CBK96007.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
Length = 409
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 74/349 (21%), Positives = 139/349 (39%), Gaps = 20/349 (5%)
Query: 1 MRQF---LVIIAMAMLSNIFPFLS------IAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ + A+A + + A + + + +TG V+ E+
Sbjct: 24 IKRITAGVTAFALAAVMQGASLTAFSEGDVSAVDSITKAAIVTEVSTGQVLYEHNSHERL 83
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS+TKLM + +++ + T IT + A+ S G M+ + ++ +
Sbjct: 84 PMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAMDGSVIWLNVGEEMSAYDMIRSV 143
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ SAND VA+ E + TE+ FV+ MN ++ LG+S TH+ N G HYT+A D A
Sbjct: 144 VIASANDACVAVCEYITGTEEMFVERMNKRAQELGMSDTHYDNCVGFDSDTHYTSAYDTA 203
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+LS +++ Y +F + + + + NTN + + G G KTG T +G
Sbjct: 204 LLSA-AVSEYDCYNEFFATRLDYVREGERQTQLLNTNKMMQRYDGIIGGKTGTTDKAGCC 262
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK------KINYIIKDFY 281
+ A +G+ L AV LG + R LL+ GF + + +
Sbjct: 263 LAVWAKRGNMKLCAVALGCKESEQRFTACTDLLNYGFSGFELYRTAVDSDVLTPVTVTEG 322
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + + + + EK+ ++
Sbjct: 323 LEKQAEVRVKRLNTIVIPKGSSKRIEYTHTVVDSLSAPVQYGEKVGEVR 371
>gi|332186127|ref|ZP_08387873.1| D-alanyl-D-alanine carboxypeptidase family protein [Sphingomonas
sp. S17]
gi|332013942|gb|EGI56001.1| D-alanyl-D-alanine carboxypeptidase family protein [Sphingomonas
sp. S17]
Length = 390
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 77/336 (22%), Positives = 138/336 (41%), Gaps = 20/336 (5%)
Query: 18 PFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P ++ A P + D ++G ++ + D PAS+ K+MT YV F +K+ +
Sbjct: 20 PSIAAAPEFQTTAPVAFMKDLSSGAILFQRDADRRMPPASMAKMMTVYVAFDLIKKGQLK 79
Query: 76 LTTPITISKNASEYP-----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +T+ S +++ N L ++ S ND V +AE + T
Sbjct: 80 LDDMVTVQPETWAKWHGPQAGSTMFLSPNEQVSVANLLYGIVTLSGNDACVVLAEHIAGT 139
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMH-YF 188
E+ FV+ MN T+K +GL+ +HF ++G G Y TARD+A L+ DFP+ ++
Sbjct: 140 EQNFVERMNRTAKQIGLANSHFGTSNGWPDGGVTYVTARDLADLAEHTIQDFPKLYKQFY 199
Query: 189 QIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ N + +G GADG+KTG T +G+ SA Q + L+ V
Sbjct: 200 SRRDFTWGKTMGGNAITQANRDPLLGRVAGADGLKTGHTEEAGYGFTGSAEQNGRRLVMV 259
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCT 298
+ G N R + S ++ GF + + K + + S+ ++
Sbjct: 260 MAGLTSSNARAEESVKFMNWGFRAWQAKPVVAQGKKVADAEVQMGSSSSVGLVAPRQLTV 319
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
T ++ K + + + + +
Sbjct: 320 TLPAGLDPQMSAKVV-YQGPIKAPIKAGQHIADLVI 354
>gi|325202334|gb|ADY97788.1| penicillin-binding protein 6 precursor [Neisseria meningitidis
M01-240149]
gi|325207913|gb|ADZ03365.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
NZ-05/33]
Length = 389
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 77/349 (22%), Positives = 140/349 (40%), Gaps = 18/349 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY--------------TLLDTNTGHVIAENYP 47
+ V++++ + + S A + ++D + +++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSKQILSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ + + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLVGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A+LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNRALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNISEEVCTT---QKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T + + + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKTTEQILETIQPIPAPVKKGQILGKI 353
>gi|229543957|ref|ZP_04433016.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
coagulans 36D1]
gi|229325096|gb|EEN90772.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
coagulans 36D1]
Length = 373
Score = 173 bits (437), Expect = 4e-41, Method: Composition-based stats.
Identities = 74/334 (22%), Positives = 138/334 (41%), Gaps = 24/334 (7%)
Query: 1 MRQFLVIIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M+++ + A+A+L + + + L+D +TG ++ E P + AS+
Sbjct: 1 MKRYFLYAALAVLVFSALPPGAAAADTPSVQAKSAILMDQDTGRILYEKDAYEPRSIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA V K + +S A S+ K G + + + L+++S
Sbjct: 61 TKIMTALVAIESGK-----MDKEAVVSNRAVRTEGSSLYLKPGDKWKMKDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILS 174
ND A IAE++ + + FV MN +K +G+ THF N +G+ G HY+TA DMA+L
Sbjct: 116 NDAANVIAENVGGSIEGFVFMMNEKAKEIGMHDTHFANPNGLEDPGGRHYSTAYDMALLM 175
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAI 233
++ K + + N N + G KTG+T A+ +V +A
Sbjct: 176 KY-AMQNKEFRKITGTKFYK----GWRNKNRLLTEKYRYCTGGKTGYTKAARRTLVTTAT 230
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+G ++LIAV L D ++ GF ++ + + + +
Sbjct: 231 KGGENLIAVTLNDSDD---WDDHIAMYEYGFSQYDRKRIVEEGPVAAVRTKYLKQHVYVK 287
Query: 294 EEVCTTQKEI----INYNTQMKEAKDKESHFIDF 323
++ K + ++K+ ++
Sbjct: 288 RDITYPLKAGEEDAVKVEYRIKKPENSWKDPEKV 321
>gi|330993785|ref|ZP_08317717.1| D-alanyl-D-alanine carboxypeptidase dacF [Gluconacetobacter sp.
SXCC-1]
gi|329759053|gb|EGG75565.1| D-alanyl-D-alanine carboxypeptidase dacF [Gluconacetobacter sp.
SXCC-1]
Length = 371
Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats.
Identities = 86/247 (34%), Positives = 135/247 (54%), Gaps = 1/247 (0%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ A+ ++D TG V+++ PD PASLTKLMT Y+ F ++ + L
Sbjct: 29 AARAQYAGQVSSIVVDARTGAVLSQQDPDLRRYPASLTKLMTLYLTFKAVRTGQVTLEQQ 88
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHM 138
+ +S +A+ PS + GS++T++ A+ L+ KSAND A A+ E L ++ F M
Sbjct: 89 MPVSVHAASMEPSKLGLRPGSSLTVEQAVLALVTKSANDAACALGEFLGGGDETRFAAMM 148
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+ LG+ T F NA G+ T+ARD+A+L+ + D+ +Y HYF + G G
Sbjct: 149 TREAGRLGMYDTVFRNASGLPNPEQMTSARDLAVLARHLIVDYGEYYHYFAVPGFYFHGH 208
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
PN + +G + GADG+KTG+T +G N+V SA++ + LI V++GA + RN A
Sbjct: 209 AVPNHDPMLGAYPGADGLKTGYTDEAGHNLVTSAVRDNVRLIGVVMGAKSNSRRNTTMAE 268
Query: 259 LLSMGFY 265
LL F
Sbjct: 269 LLDASFQ 275
>gi|134298517|ref|YP_001112013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
MI-1]
gi|134051217|gb|ABO49188.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
MI-1]
Length = 410
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 83/334 (24%), Positives = 141/334 (42%), Gaps = 19/334 (5%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + LLD +G V+ PAS TK++TA V +
Sbjct: 16 TVTSQAWAGQPQITGETAVLLDAKSGAVLYGKEEHKRMYPASTTKVLTALVALEHAR--- 72
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+T +TI N S+ ++ ++G + + L L++ SAND VAIAE + + K
Sbjct: 73 --MTDRVTIGPNPSKAGGTSIWLQEGEQLAMQELLYALMLNSANDAGVAIAEHVAGSVGK 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY----MHYFQ 189
F N ++ LG + THF+N HG+ HY+TA D+A++ + + +
Sbjct: 131 FAAMSNERARELGANNTHFVNPHGMPNKDHYSTAYDLALIGQAALKNKDLRKILTTIHHE 190
Query: 190 IKGLEIKGKKY-PNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
I + + +KY N N + GA G+KTG+T +G I+ASA + LIAV+L
Sbjct: 191 IPRADPEAQKYLFNHNKLLWSKTYGYKGATGLKTGYTVEAGQCIIASAERNGMELIAVVL 250
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQK 301
+ N +A LL GF N T+R+ + + S+ + T
Sbjct: 251 RSEGFNL-WTDAAKLLDYGFANFTNRQLVQGGKIMADVPVKYGKSHVKLLAQNDFYYTFP 309
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + + E +K +L + +
Sbjct: 310 KEGTVDLHV-ITEPAEEAKAPVDKGQVLGAVVIQ 342
>gi|90424819|ref|YP_533189.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisB18]
gi|90106833|gb|ABD88870.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisB18]
Length = 588
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 89/311 (28%), Positives = 158/311 (50%), Gaps = 7/311 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ N ++D N+G ++ N PD +PASLTK+MT Y++F L+ K L +
Sbjct: 47 VATESYNPAFASIIVDGNSGDILTANNPDGLRHPASLTKIMTLYLLFERLESGKMQLDSE 106
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ +S++AS P+ + G T+ +++A+K L+ +SAND AV I+E++ E F + M
Sbjct: 107 MDVSEHASIQAPTKLGLRPGQTIRVEDAIKALVTRSANDAAVVISEAIAGDEGDFAKLMT 166
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+++LG++ T + NA G+ TTARD A L ++ FP+Y +F +G
Sbjct: 167 KKARSLGMTRTVYRNASGLPDDDQVTTARDQATLGRAVQERFPRYYRFFSTSVFNYRGNA 226
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N +G+ G DG+KTG+T ASGFN+V S +G++ LI V+LG +R+ + +L
Sbjct: 227 IRNHNRLLGSVEGVDGIKTGYTRASGFNLVTSMHRGNRHLIGVVLGGRSGGSRDAIMRNL 286
Query: 260 LSMGFYNKTDRKKINYIIK-------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
L+ + R+ + + + ++ S+ P + +V + + + E
Sbjct: 287 LAANLDKASTRRTVTAVAERSTSEANAEVAEDESDNRPTRTVQVQGGIQAPVQVASATAE 346
Query: 313 AKDKESHFIDF 323
Sbjct: 347 PVATPRPAAPI 357
>gi|160915294|ref|ZP_02077507.1| hypothetical protein EUBDOL_01303 [Eubacterium dolichum DSM 3991]
gi|158433093|gb|EDP11382.1| hypothetical protein EUBDOL_01303 [Eubacterium dolichum DSM 3991]
Length = 414
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 85/346 (24%), Positives = 149/346 (43%), Gaps = 15/346 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M+ LV++ ++ L++ +G VI + + PAS+
Sbjct: 32 MKLALVVLCLSASLLPITARKEVSDVGLKGDAKSVYLMEYTSGKVIYAEHENKRLYPASM 91
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+M +++ L + + L +T S+ A+ S + T++ ++ +K + + SA
Sbjct: 92 TKMMGLLLIYEALHDGQLQLDDMVTTSEFAASMGGSQVFLEPQETLSAEDMIKSICIASA 151
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND VA+ E L + + FV MN +K LG++ THFMNA G+ HYTTA+DMA+L
Sbjct: 152 NDAMVAMGEHLAGSHEAFVNKMNRKAKELGMNNTHFMNATGLHDDKHYTTAKDMALLGQA 211
Query: 177 IKTDFPQYM------HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + + + + I+ K NTN + G DG+KTGFT + I
Sbjct: 212 LLKEGGEELLKITSTYDAYIREDSDKKFWLVNTNKLLKQVEGVDGLKTGFTKEALSCITV 271
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLS 286
SA + + LIAV++GA + RN +++ LL GF + F
Sbjct: 272 SAKRKELRLIAVVMGASNAKARNAIASGLLEYGFAQYAQGLLYAKGTRLDTLSFENGKPK 331
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
E++ ++ + KE + ++K +
Sbjct: 332 QADIVALEDISYVFEKGKEPKEKHKEI-TITKKKLPYQKNEKIGTV 376
>gi|296313509|ref|ZP_06863450.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria polysaccharea
ATCC 43768]
gi|296839954|gb|EFH23892.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria polysaccharea
ATCC 43768]
Length = 389
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 80/328 (24%), Positives = 138/328 (42%), Gaps = 11/328 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ + P L ET + ++D + ++ + P PA+LT+LMTAY+VF +K
Sbjct: 30 LTVHAAPTLQTPETLTA-AHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKS 88
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKT 130
+ I ++A S + G T++ D LK +I SAND A+ +A +
Sbjct: 89 GNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGS 148
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+ FVQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F I
Sbjct: 149 IENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLALLSEALMRDFPEYYPLFSI 208
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + K + N N + +G+K G T + G+N+ S + ++ + LG+
Sbjct: 209 KSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAE 268
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEII 304
TR ++ LL+ K Q + + KE
Sbjct: 269 TRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAK 328
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 329 TAEQILET---IQPIPAPVKKGQILGKI 353
>gi|291562424|emb|CBL41240.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SS3/4]
Length = 450
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 89/325 (27%), Positives = 140/325 (43%), Gaps = 14/325 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
P L++ +TG VI E D P NPAS+TK+MT ++F L+ K LT +
Sbjct: 83 TGPEITAPSAILMEASTGTVICEKNADEPRNPASVTKIMTLILIFDALQSGKIRLTDEVV 142
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
S +A S ++G T++ +K +++ S ND +VA+AE + E FV+ MN
Sbjct: 143 TSAHAKSMGGSQVFLEEGEIQTVETLIKCIVIASGNDASVAMAEFIGGDEGTFVKMMNER 202
Query: 142 SKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199
+K LG+ T F++ G+ H TTARD+A++S + T +PQ +Y I I
Sbjct: 203 AKGLGMEHTKFIDCCGLTDSPEHVTTARDIALMSRELITKYPQITNYTTIWMENITHVTK 262
Query: 200 -------YPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
NTN + T G+KTG T + + + A+A + LIA I+ A D
Sbjct: 263 QGTKEFGLSNTNKLLKMATNFEVTGLKTGSTSIAKYCLSATAKKDGVELIAAIMAAPDFK 322
Query: 251 TRNKVSASLLSMGFYN---KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R K + +LL+ GF N D + +++
Sbjct: 323 ARFKDAVTLLNYGFGNCRLYKDETPPELPKLSVTGGKEPEVELSYGVTFTYLGLHGEDFS 382
Query: 308 TQMKEAKDKESHFIDFEKITLLKNK 332
+E +ES + L
Sbjct: 383 GVERELMLEESAKAPVKAGDQLGTL 407
>gi|218662722|ref|ZP_03518652.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli IE4771]
Length = 289
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 87/261 (33%), Positives = 137/261 (52%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + LS+ ++A+ +LD +G V+ + D PASLTK+M
Sbjct: 1 MTKITTRLRATALSSALLMCAVAQAEAGQASFVLDVQSGQVLEASNQDDLNYPASLTKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L + + +T+S+NA P G +TL A++ ++V SAND A
Sbjct: 61 TLYLAFEALHDGRLTWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVESIVVLSANDSA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE L +E+ F + M + ++ LG+ T F N G+ TTARDMA L + D
Sbjct: 121 VAIAEQLGGSEQAFARTMTDKARQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRD 180
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++G + ++
Sbjct: 181 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVV 240
Query: 241 AVILGALDRNTRNKVSASLLS 261
V++G R+ A LL
Sbjct: 241 GVVMGEKTAGLRDDKMAGLLD 261
>gi|190891891|ref|YP_001978433.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 652]
gi|190697170|gb|ACE91255.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
[Rhizobium etli CIAT 652]
Length = 524
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 86/260 (33%), Positives = 140/260 (53%), Gaps = 2/260 (0%)
Query: 3 QFLVIIAMAMLSNIF-PFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ L I++MA+ + + AE Y ++D TG+V+ D PASLTK+M
Sbjct: 26 KLLAILSMAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMM 85
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A
Sbjct: 86 TLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAA 145
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+ E L +E +F Q M + LG++ T + NA+G+ TTARD A L ++
Sbjct: 146 TALGEMLGGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQH 205
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQY YF + + + + N VG+ G DG+KTG+T A+GFN+V+S +S++
Sbjct: 206 FPQYYGYFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIV 265
Query: 241 AVILGALDRNTRNKVSASLL 260
+V+LG R+ +L+
Sbjct: 266 SVVLGGTSGPARDAQMRNLI 285
>gi|261392770|emb|CAX50346.1| D-alanyl-D-alanine carboxypeptidase (DD-peptidase;
DD-carboxypeptidase; CPase; PBP5) [Neisseria
meningitidis 8013]
gi|325203950|gb|ADY99403.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M01-240355]
Length = 389
Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats.
Identities = 79/352 (22%), Positives = 141/352 (40%), Gaps = 24/352 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY--------------TLLDTNTGHVIAENYP 47
+ V++++ + + S A + ++D + ++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|218675296|ref|ZP_03524965.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli GR56]
Length = 370
Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats.
Identities = 115/292 (39%), Positives = 174/292 (59%), Gaps = 2/292 (0%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ + L+D TG V+ W PASLTKLMT Y VF ++ + L TPI +SK A
Sbjct: 26 QANPHILVDVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIRAGQISLDTPIVMSKRA 85
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ P + FK G +TLD+ALK+L+VKSAND++VA+AE++ T++ FV MN + LG
Sbjct: 86 AAQPAAKMYFKPGQKLTLDSALKILLVKSANDVSVAVAEAIGGTQEGFVTRMNGEALKLG 145
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++G + PN N
Sbjct: 146 MTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFALEGFTTGQQNVPNLNML 205
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+G F GADGMKTGF CASGFN + SA + ++L++V+LG R +A+LL GF
Sbjct: 206 IGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAARADATANLLQKGFTT 265
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
+ +K + Q +V +I+ ++C+ + I T+ + + K S
Sbjct: 266 QFPGNDTLGSLKAYEQGQD--QVTDITADICSAKGAKIRSETRDEVGRMKVS 315
>gi|16077078|ref|NP_387891.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
subtilis str. 168]
gi|221307819|ref|ZP_03589666.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Bacillus subtilis subsp. subtilis str. 168]
gi|221312141|ref|ZP_03593946.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221317074|ref|ZP_03598368.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Bacillus subtilis subsp. subtilis str. JH642]
gi|221321337|ref|ZP_03602631.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Bacillus subtilis subsp. subtilis str. SMY]
gi|585034|sp|P08750|DACA_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacA;
Short=CPase; Short=DD-carboxypeptidase;
Short=DD-peptidase; AltName: Full=Penicillin-binding
protein 5; Short=PBP-5; Flags: Precursor
gi|467400|dbj|BAA05246.1| D-alanine carboxypeptidase (PBP-5) [Bacillus subtilis]
gi|2632277|emb|CAB11786.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Bacillus subtilis subsp. subtilis str. 168]
Length = 443
Score = 172 bits (436), Expect = 6e-41, Method: Composition-based stats.
Identities = 72/375 (19%), Positives = 143/375 (38%), Gaps = 40/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M ++ +A+ L+ + + +++ ++G ++ D AS+TK
Sbjct: 11 MSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNADKRLPIASMTK 70
Query: 59 LMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
+MT Y++ + + K + + + + SN +K T+ + +
Sbjct: 71 MMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQATAIY 130
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY---------- 164
SAN A+AIAE + +E KFV+ MN +K LGL+ F+NA G+ +
Sbjct: 131 SANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLHGHQPEGTSVN 190
Query: 165 ----TTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA------VGT 209
+A+DMA+L+ + TD+P+ + I + + PN N+
Sbjct: 191 EESEVSAKDMAVLADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLVSEYK 250
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFYNK 267
DG+KTG T ++G +A + +I V+L A R + + F N
Sbjct: 251 KATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLNAKGNLHTGRFDETKKMFDYAFDNF 310
Query: 268 TDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ ++ + + ++ K N + K +K++
Sbjct: 311 SMKEIYAEGDQVKGHKTISVDKGKEKEVGIVTNKAFSLPVKNGEEKNYKAKVTLNKDNLT 370
Query: 321 IDFEKITLLKNKITK 335
+K T + +
Sbjct: 371 APVKKGTKVGKLTAE 385
>gi|218671981|ref|ZP_03521650.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
etli GR56]
Length = 277
Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats.
Identities = 88/261 (33%), Positives = 136/261 (52%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + LS+ + A+ ++D +G V+ + PD PASLTK+M
Sbjct: 1 MTKTTSRLRATALSSALLMGAFAQAEAGQASFVVDAQSGQVLEASNPDDLNYPASLTKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L E + +T+S+NA P G +TL A++ ++V SAND A
Sbjct: 61 TLYLAFEALHEGRLTWEQKLTMSENAESKEPFKLAVGAGRRVTLREAVESIVVLSANDSA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE L +E+ F + M + + LG+ T F N G+ TTARDMA L + D
Sbjct: 121 VAIAEQLGGSEQAFAKTMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRD 180
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++G + ++
Sbjct: 181 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVV 240
Query: 241 AVILGALDRNTRNKVSASLLS 261
V++G R+ A LL
Sbjct: 241 GVVMGEKTAGLRDDKMAGLLD 261
>gi|159185835|ref|NP_356978.2| penicillin-binding protein dacf precursor [Agrobacterium
tumefaciens str. C58]
gi|159140969|gb|AAK89763.2| penicillin-binding protein dacf precursor [Agrobacterium
tumefaciens str. C58]
Length = 389
Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats.
Identities = 124/286 (43%), Positives = 173/286 (60%), Gaps = 3/286 (1%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D TG VI+ W PASLTKLMTAY+ FS +K K T + +SK A++ P
Sbjct: 55 MVVDVKTGKVISHQEAFRKWYPASLTKLMTAYIAFSQMKAGKISPQTEVVMSKKAADQPA 114
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S FK G +T+D+ALKLL++KSANDIAVAIAE++ T FV MN ++ LG+S+TH
Sbjct: 115 SKMYFKPGQKLTMDSALKLLLIKSANDIAVAIAETIGGTSDNFVAQMNAQAQRLGMSSTH 174
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
++N +G+ G YTTARD+A+L+ IK +FP+Y HYF ++G+ K Y N N VG F
Sbjct: 175 YVNPNGLPGKGQYTTARDLALLALIIKREFPEYAHYFSLEGVTTGKKNYANFNMLVGRFE 234
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
GADGMKTGF CASGFN VASA++ +S+I V+LGA R SA LL MG + +
Sbjct: 235 GADGMKTGFICASGFNQVASAVRNGRSVITVVLGADSLAGRTDQSADLLQMGLTAPSGQG 294
Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
+ + + EV +IS E+C + + + + +
Sbjct: 295 VSLASLAPY---GDTAEVNDISAEICNPKAAKVRSEGRDEAGRMVI 337
>gi|254670388|emb|CBA05903.1| putative penicillin-binding protein precursor [Neisseria
meningitidis alpha153]
Length = 389
Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats.
Identities = 79/324 (24%), Positives = 134/324 (41%), Gaps = 11/324 (3%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P L ET + ++D + +++ + P PA+LT+LMTAY+VF +K
Sbjct: 34 AAPTLQTPETLTA-AHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIR 92
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKF 134
+ I ++A S + G T+ D LK +I SAND A+ +A + + F
Sbjct: 93 SEENLKIPESAWASEGSRMFVRPGDTVGTDKLLKGMIALSANDAALTLAGRLGNGSIENF 152
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
VQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK +
Sbjct: 153 VQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFK 212
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
K + N N + +G+K G T + G+N+ S + ++ + LG+ R
Sbjct: 213 FKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAEIRAS 272
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEIINYNT 308
++ LL+ K Q + + KE
Sbjct: 273 DNSKLLNWALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKMAEQ 332
Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 333 ILET---IQPIPAPVKKGQILGKI 353
>gi|168187889|ref|ZP_02622524.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
Eklund]
gi|169294277|gb|EDS76410.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
Eklund]
Length = 410
Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats.
Identities = 89/355 (25%), Positives = 157/355 (44%), Gaps = 27/355 (7%)
Query: 1 MRQFLVIIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR+ L I + +++ + T L+D NTG ++ D + PAS
Sbjct: 1 MRKLLTFIWIFIITFSVIVYDTKAIDTPPTVSADGVVLMDKNTGQILYSKNLDTQYPPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK+MTA + K L +TI KNA+ S +G +T+ + L L+++S
Sbjct: 61 TTKIMTALLAIEKCK-----LDDVVTIGKNATNVDGSKIYIFEGEKLTVRDLLYALLLQS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND AVA++E + + ++FV+ MN +K LG T+F+N HG+ H T+ARD+A++
Sbjct: 116 ANDCAVALSEHISGSTQEFVKLMNTRAKELGCKNTNFVNPHGLYDDKHRTSARDLALILR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG------------TFLGADGMKTGFTCA 223
+ + + I + + G +G KTG+T
Sbjct: 176 -ELSKHEDFKKIATTQIYTINPTNKEPNKRYIWNKDKLVQKKSKCYYEGCEGGKTGYTIQ 234
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF-YQ 282
S + VA+A + ++ LIA++L ++T +L + GF N T K + + Y+
Sbjct: 235 SKHSFVATATRDNKGLIAILLH-DAKHTYWDDVINLFNFGFNNYTREKLYSKDQCLYNYK 293
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL--KNKITK 335
+ + VP I+ + ++ + + + D FEK ++ N K
Sbjct: 294 IDKGSTVPLIATKDFYYLRKKGDKDIPQLKVNDISLSNKTFEKGDIILTGNITYK 348
>gi|319899483|ref|YP_004159580.1| penicillin-binding protein [Bartonella clarridgeiae 73]
gi|319403451|emb|CBI77022.1| penicillin-binding protein [Bartonella clarridgeiae 73]
Length = 367
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 123/336 (36%), Positives = 194/336 (57%), Gaps = 13/336 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M Q ++ + +I L++A + +D TG ++ N W PASLTKLM
Sbjct: 1 MHQLFHTFFLSFILSITSSLTLAHP-----FISVDATTGRILKHNQAFERWYPASLTKLM 55
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV+F + K ITISKNA++ P NS +K GS +TLD ALK+ +VKS ND+A
Sbjct: 56 TAYVIFRAMSTGKISSHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLA 115
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+AI+E++ +++ FVQ MN ++ LG+ T+F N G+ +Y+TARD+A+L+ +I+ +
Sbjct: 116 IAISEAISGSQEAFVQQMNAEAQRLGMFGTNFTNTSGLPDPNNYSTARDIALLAVQIRRE 175
Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF I ++ K N+N +G F G DGMKTGF CASGFN+VASA + ++
Sbjct: 176 FPQYAHYFSIPAIDFGNGKKIQFNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+IAVILG+ N R + +A LL GF +K + ++ + + ++ ++ +++C
Sbjct: 236 IIAVILGSDSVNKREEKAAQLLDEGFSDKGSLQSTLATLEPYGTK--MSQTTDMRQQICA 293
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + N+ +E + + IT L + I
Sbjct: 294 PEAIKMRLNSYDEEGNIIFTSPL----ITALPSSIL 325
>gi|163760868|ref|ZP_02167947.1| hypothetical protein HPDFL43_06977 [Hoeflea phototrophica DFL-43]
gi|162281912|gb|EDQ32204.1| hypothetical protein HPDFL43_06977 [Hoeflea phototrophica DFL-43]
Length = 441
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 98/321 (30%), Positives = 154/321 (47%), Gaps = 1/321 (0%)
Query: 10 MAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
MA S A Y ++D TG + D PASLTK+MT Y+VF
Sbjct: 1 MAFAGLAMALASGAALANSKYAGIVVDAKTGKTLYAYNADQLRFPASLTKMMTLYMVFEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
L+++K L T I S NA++ PP+ G ++T++ A+ L+ KSAND + A+AE L
Sbjct: 61 LEQRKIKLNTRIVFSANAAKEPPTKLGVGTGKSITVEQAIYALVTKSANDASTAVAEHLG 120
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+E KF + M +++LG+S T F NAHG+ TTARDMA L ++ FP+ YF
Sbjct: 121 GSEAKFARMMTAKARSLGMSRTTFRNAHGLPNSKQVTTARDMARLGIALREHFPRQYKYF 180
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ + + N N +GT G DG+KTG+T ASGFN+V+S + ++S++AV++G
Sbjct: 181 ATRSFKFGKTRLSNHNRLLGTVRGVDGIKTGYTRASGFNLVSSVVDRNRSIVAVVMGGRT 240
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+RN L++ + R N I + + + +
Sbjct: 241 GASRNAQMKKLIAGYLSKASTRGSGNLIARGAPSTISVAALELPKVGPVPNLRHKASARM 300
Query: 309 QMKEAKDKESHFIDFEKITLL 329
+ A + + E +
Sbjct: 301 ALAYAAPSPAPVVGREALAQS 321
>gi|332977394|gb|EGK14172.1| serine-type D-Ala-D-Ala carboxypeptidase [Desmospora sp. 8437]
Length = 377
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 84/353 (23%), Positives = 148/353 (41%), Gaps = 26/353 (7%)
Query: 1 MR--QFLVIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWN 52
MR ++L+ + + + + P S+A ++D +G ++ E
Sbjct: 1 MRLTRWLLAVWIGGVLVLLPAESLASHRPDHLELSARAAAVIDVQSGRILYEKKAGQQMR 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
ASLTK+MTA V LT + + A S+ K G + L++ L L+
Sbjct: 61 IASLTKIMTAIVAIENSD-----LTEKVKVKPGAVGVEGSSIYLKPGEEIPLEHLLYGLM 115
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
++S ND AVAIAE + + + FV MN ++ LGL THF N HG+ HY++A D+A
Sbjct: 116 LRSGNDAAVAIAEHVGGSVEGFVYKMNEKAEYLGLRNTHFQNPHGLDAKEHYSSAEDLAR 175
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGK------KYPNTNWAVGTFLGADGMKTGFTCASGF 226
L+ + P++ + + K+ N N + + G DG+KTGFT S
Sbjct: 176 LTAYALKN-PEFRKIVSTQVKTVPWPGEEWHRKWYNKNKMLRLYPGGDGVKTGFTKLSRR 234
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQ 283
+V+SA + + + V L A + + S LL GF + + + + +
Sbjct: 235 TLVSSATREGRQIATVTLNAPND---WEDSMRLLEYGFRHFQRVRLVKKGEEFSSGLKGR 291
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
V + S T++E + + + ++ + + K
Sbjct: 292 APLEIVASRSFTYPLTEEERDRVEVRPMITYPLKKAKVSGIRVGTARIFVEGK 344
>gi|23099281|ref|NP_692747.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis
HTE831]
gi|22777510|dbj|BAC13782.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Oceanobacillus iheyensis HTE831]
Length = 367
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 86/315 (27%), Positives = 137/315 (43%), Gaps = 12/315 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
MR F+ ++ +L FP A + L++ +TG V+ E + + AS+TK+
Sbjct: 2 MRVFIGLLTSLILFMSFPSYGQALPSVSANNAVLIEQSTGRVLFEKNANEEASIASITKI 61
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTA + ML +T S+ A S+ ++G + L + + L+++S ND
Sbjct: 62 MTAIIAIE-----SGMLDEQVTTSRKAIYTEGSSIYLEQGEEIPLKDLVYGLMLRSGNDA 116
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
AVAIAE + +E+ FV MN +K LG+ THF N HG+ HY++A DMAIL
Sbjct: 117 AVAIAEHVGGSEEGFVYLMNEKAKWLGMENTHFDNPHGLDSDTHYSSAYDMAILMKYAMD 176
Query: 180 DFPQYMHYFQIKG-LEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + + N N + G KTG+T A+G +V SA +
Sbjct: 177 NPMFREVSQSDSYLSNNRTYHWQNKNKLLTRLYEYCTGGKTGYTKATGRTLVTSAHKNGM 236
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ-NLSNEVPNISEEV 296
LIAV L A D + + GF + ++ + S N ++ V
Sbjct: 237 DLIAVTLDAPDD---WQDHIGMFEWGFEQFEMKTVQEEGTALYHIEPKTSKVYGNYNKAV 293
Query: 297 CTTQKEIINYNTQMK 311
+ N N +K
Sbjct: 294 NLPLLKDGNDNVDVK 308
>gi|261406005|ref|YP_003242246.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
sp. Y412MC10]
gi|261282468|gb|ACX64439.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
sp. Y412MC10]
Length = 394
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 83/295 (28%), Positives = 132/295 (44%), Gaps = 15/295 (5%)
Query: 1 MRQFLVIIAMAMLSNI--FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M L+ I +++ + +N L+D +G ++ D ASLTK
Sbjct: 12 MLSMLIAICCLLVTAVPVHADHEQGPSNHAQAAALIDVTSGRMLYSKNGDERLRIASLTK 71
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MTA V K L + +SKNA S+ K G MTL+N L L+++S ND
Sbjct: 72 IMTAIVAIEHGK-----LDDRVKVSKNAFAKEGSSIFLKLGEEMTLENLLYGLMLRSGND 126
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A AIAE + TE+ FV MN + +LG++ +HFMN HG+ HY++A D+A L+
Sbjct: 127 AATAIAEHVGGTEEGFVLLMNEKAASLGMTNSHFMNPHGLDHDEHYSSAHDVAKLTAYAL 186
Query: 179 TDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ K+ N N + + GADG+KTG+T + +V+SA
Sbjct: 187 KNPVFSEIVKTPTKKAPNPNEAWDYKWDNKNKMLRFYEGADGVKTGYTKKAFRCLVSSAT 246
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ Q + AV L + +++L GF + +K K ++
Sbjct: 247 RNGQQIAAVTLNDGND---WNDHSNMLDYGFAHFPLKKVTEKGQKIQGYPLVTGS 298
>gi|49474795|ref|YP_032837.1| penicillin-binding protein [Bartonella quintana str. Toulouse]
gi|49240299|emb|CAF26780.1| Penicillin-binding protein [Bartonella quintana str. Toulouse]
Length = 365
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 118/326 (36%), Positives = 190/326 (58%), Gaps = 12/326 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MRQ L + ++ + N+ + +A+ + +D TG ++ N W PASLTKLM
Sbjct: 1 MRQLLYNLFLSFILNLTSTIVLAQP-----FISVDVTTGRILEHNQAFERWYPASLTKLM 55
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV+F + K ITIS+ A++ P +S +K GS +TLD AL + +VKS ND+A
Sbjct: 56 TAYVIFRAMSIGKISSNKHITISEYAAKAPTYHSGYKAGSVLTLDTALSITMVKSTNDLA 115
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A++E++ ++K FVQ MN ++ LG+ THF NA G+ +Y+TARD+A+L+ +I+ +
Sbjct: 116 IAMSEAVAGSQKAFVQQMNAEAQRLGMFGTHFTNASGLPDPHNYSTARDIALLAVQIRRE 175
Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF I ++ K+ PN+N +G F G DGMKTGF CASGFN+VASA + ++
Sbjct: 176 FPQYAHYFSIPAIDFGNKRKIQPNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+IAVILG+ + R + +A LL GF ++ + ++ + + + ++ ++ CT
Sbjct: 236 IIAVILGSNTISEREEKAAQLLERGFLHQGSLQSTLATLEPYGTKMIQAS--DMRQQTCT 293
Query: 299 T---QKEIINYNTQMKEAKDKESHFI 321
+ +Y+ Q +
Sbjct: 294 PEAMKMHANSYDDQGNIILNSPFIAA 319
>gi|296284125|ref|ZP_06862123.1| D-alanyl-D-alanine carboxypeptidase [Citromicrobium bathyomarinum
JL354]
Length = 378
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 79/340 (23%), Positives = 147/340 (43%), Gaps = 11/340 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M FL +++A+ + + S + P ++D ++G + D + PAS+TK+M
Sbjct: 1 MVGFLAALSLALPTGLSAQPSPPTPEQAPIAYMIDLSSGQTLYARDIDRRFVPASITKVM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITI---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T V F L + K + S + S + + +++ L + SAN
Sbjct: 61 TTLVAFDMLADGKLRRDQRMPYRDASFDEWHRKGSTLFLPRRARPSVNELLIGITTVSAN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMAILSWR 176
D AV +AE + K+ MN T++++G+ ++F +G GH +T+ARD+ +L+ R
Sbjct: 121 DAAVVLAEGASGSVDKWTARMNATARSIGMHDSYFGTPNGWPDEGHTFTSARDLGLLAKR 180
Query: 177 IKTDFPQYMHYFQ-IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
I P + Y+ GL+ G N + G GADG+KTG+T +G+ + +A +
Sbjct: 181 IIRGHPDFFDYYYGRTGLKAYGIAQDNHDPITGRVDGADGLKTGYTDQAGYGFLGTAERD 240
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV---PNI 292
+ L+ V+ GA RN+ + + GF + Q + V P +
Sbjct: 241 GRRLVMVVAGADRGQVRNRAARDFIEWGFDAFDSTLLVRKGKPAASAQVQNGAVDQLPLV 300
Query: 293 SEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + V T + + ++ + E + L
Sbjct: 301 AAQDIRVATPRGDGARPELTVRYDGPLRAPIAKGEAVATL 340
>gi|325206288|gb|ADZ01741.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M04-240196]
Length = 389
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 79/352 (22%), Positives = 141/352 (40%), Gaps = 24/352 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY--------------TLLDTNTGHVIAENYP 47
+ V++++ + + S A + ++D + ++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|163759954|ref|ZP_02167038.1| putative penicillin-binding protein [Hoeflea phototrophica DFL-43]
gi|162282912|gb|EDQ33199.1| putative penicillin-binding protein [Hoeflea phototrophica DFL-43]
Length = 371
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 116/298 (38%), Positives = 174/298 (58%), Gaps = 2/298 (0%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+D +G VIA W PASLTK+MTAYV FS +K + + TP+T+S +A+
Sbjct: 2 ATPSIAVDVGSGRVIAHEDAFQRWYPASLTKIMTAYVAFSAVKSGQMSMDTPVTMSIHAA 61
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ PPS FK G LD+ALK L+VKSAND+AVAIAE++ +E+ FV+ MN T+K LG+
Sbjct: 62 KEPPSKMYFKPGERFPLDSALKYLMVKSANDVAVAIAEAVSGSEEAFVREMNATAKALGM 121
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
AT F+N +G+ G YTTARDMA+L+ + +FP+Y YF +G + + + N N +
Sbjct: 122 QATRFVNPNGLPGSGQYTTARDMAVLAAAARRNFPEYAQYFGYEGFSVGKQVHTNYNLLI 181
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
G F GADGMKTGF CASGFN V+SA + +++++V+LGA + R + SA+LL +
Sbjct: 182 GRFQGADGMKTGFICASGFNQVSSATRNGRTVVSVVLGAPSQTARAERSAALLQAALTSS 241
Query: 268 TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ + + + V +IS ++C+++ + + S E
Sbjct: 242 GSVSPSLASLAPYGEG--RDAVADISAQICSSEARAARDKNRDENGNLVLSSPFLVEP 297
>gi|260459198|ref|ZP_05807453.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
opportunistum WSM2075]
gi|259034752|gb|EEW36008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
opportunistum WSM2075]
Length = 482
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 89/273 (32%), Positives = 139/273 (50%), Gaps = 12/273 (4%)
Query: 1 MRQFLV------------IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD 48
MR+ L+ I+ A+ + ++D TG V+ +
Sbjct: 1 MRKALLGIVSRSTSPLKAIMVFALALTFVCADVASSLAARQAAIVVDAKTGKVLYSADAN 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
PASLTK+MT Y+ F L + K TP+ S AS P+ K G ++T+D A+
Sbjct: 61 GRRYPASLTKMMTLYLTFEALAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVTVDTAI 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
++ KSAND A A+ E + E F + M ++ LG++ T F NA+G+ G +TTAR
Sbjct: 121 LSIVTKSANDSATALGEMIGGNETNFARMMTAKARQLGMNGTVFRNANGLPDPGQFTTAR 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
DMA L ++ FPQY YF + ++ N +G G DG+KTG+T ASGFN+
Sbjct: 181 DMATLGIALREHFPQYYGYFSQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNL 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
V+S G++ L+AV++G +R+ A+L++
Sbjct: 241 VSSVSDGNRRLVAVVMGGTSGGSRDNQMAALIN 273
>gi|329929810|ref|ZP_08283486.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
gi|328935788|gb|EGG32249.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
Length = 394
Score = 172 bits (435), Expect = 7e-41, Method: Composition-based stats.
Identities = 83/295 (28%), Positives = 132/295 (44%), Gaps = 15/295 (5%)
Query: 1 MRQFLVIIAMAMLSNI--FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M L+ I +++ + +N L+D +G ++ D ASLTK
Sbjct: 12 MLSMLIAICCLLVTAVPVHADHEQGPSNHAQAAALIDVTSGRMLYSKNGDERLRIASLTK 71
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MTA V K L + +SKNA S+ K G MTL+N L L+++S ND
Sbjct: 72 IMTAIVAIEHGK-----LDDRVKVSKNAFAKEGSSIFLKLGEEMTLENLLYGLMLRSGND 126
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A AIAE + TE+ FV MN + +LG++ +HFMN HG+ HY++A D+A L+
Sbjct: 127 AATAIAEHVGGTEEGFVLLMNEKAASLGMTNSHFMNPHGLDHDEHYSSAHDVAKLTAYAL 186
Query: 179 TDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ K+ N N + + GADG+KTG+T + +V+SA
Sbjct: 187 KNPVFSEIVKTPTKKAPNPNEAWDYKWDNKNKMLRFYEGADGVKTGYTKKAFRCLVSSAT 246
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ Q + AV L + +++L GF + +K K ++
Sbjct: 247 RNGQQIAAVTLNDGND---WNDHSNMLDYGFAHFPLKKVTEKGQKIQGYPLVTGS 298
>gi|261400191|ref|ZP_05986316.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria lactamica ATCC
23970]
gi|269210194|gb|EEZ76649.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria lactamica ATCC
23970]
Length = 388
Score = 172 bits (435), Expect = 8e-41, Method: Composition-based stats.
Identities = 75/323 (23%), Positives = 131/323 (40%), Gaps = 10/323 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ ++D + ++ D P PA+L +LMTAY+VF LK
Sbjct: 33 AASSPQTPETLAAAHVVIDLQSRQTLSAKNIDAPAEPAALAQLMTAYLVFKNLKSGNIRP 92
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFV 135
+ I ++A + S + G ++ D LK +IV SAND A+ +A + + FV
Sbjct: 93 EETLKIRESAWKSEGSRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGRLGNGSIENFV 152
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
+ MN ++ LG+ T F N G+ Q +TARD+A+L+ + DFP+Y F IK +
Sbjct: 153 KQMNEEARRLGMKNTLFRNPTGLSQERQVSTARDLALLAEALMRDFPEYYPLFSIKSFKF 212
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ + N N + +G+K G T + G+N+ S + ++ + LG+ TR
Sbjct: 213 ENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASD 272
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE------EVCTTQKEIINYNTQ 309
++ LL+ K Q + + KE
Sbjct: 273 NSKLLNRALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEVYITLPHKEAKTAEQI 332
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 333 LET---IQPIPAPVKKGQILGKI 352
>gi|51893725|ref|YP_076416.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
IAM 14863]
gi|51857414|dbj|BAD41572.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
IAM 14863]
Length = 374
Score = 172 bits (435), Expect = 8e-41, Method: Composition-based stats.
Identities = 85/332 (25%), Positives = 130/332 (39%), Gaps = 30/332 (9%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
LLD TG V+ E PD P PASLTKLMT ++ F ++ + P+ +S+NA
Sbjct: 1 MLLDFATGQVLYEKNPDEPIAPASLTKLMTLHLAFKRIEAGQMSYDDPVVVSRNAWAANF 60
Query: 92 SN---STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
+ + G +T+ +K L + S ND AVA+AE + T + FV+ MN+ ++ LG
Sbjct: 61 PDSSLMFLEPGDKVTVGEVMKGLAIVSGNDAAVALAEHIGGTVENFVKMMNDEAQALGFK 120
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---------- 198
F++ HG+ T I+ K
Sbjct: 121 TFRFVDPHGLSPQNQVTAGEFARFARLYIQLHPESLEMLHSQKEYSYPQYENLSDARQAV 180
Query: 199 ---------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA--- 246
N N + T+ G DG+KTGF +GFN+ +A +G L+ V+LG
Sbjct: 181 TSPEAHEPITQMNRNGLLWTYEGVDGLKTGFVDEAGFNLAVTAQRGGMRLVGVLLGIQAD 240
Query: 247 ---LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD--FYQQNLSNEVPNISEEVCTTQK 301
R A+LLS GF N K +K ++ + + T
Sbjct: 241 SIPEGSAKREAEGAALLSWGFNNFVTVKPQMPEVKPVRVWKGAANEVTLQAAGGTPTLVL 300
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
E ++ + +ES K L I
Sbjct: 301 EKGLESSLTASVRQEESVTAPVAKGQKLGEVI 332
>gi|296533026|ref|ZP_06895674.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
ATCC 49957]
gi|296266655|gb|EFH12632.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseomonas cervicalis
ATCC 49957]
Length = 293
Score = 172 bits (434), Expect = 8e-41, Method: Composition-based stats.
Identities = 90/268 (33%), Positives = 146/268 (54%), Gaps = 3/268 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+R+ ++ A +L N+ P L+ A+ +++ N+G+V+ D P +PASLTK+
Sbjct: 7 LRRLGLLAATTVLFNL-PGLAQAQIGSARYAAVVIEPNSGNVLFGANADAPRHPASLTKM 65
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT Y+VF L+ + L + +++ A+ PPS G T+T++NA+ L+ KSAND+
Sbjct: 66 MTLYMVFDALRAGRLELDQRLEMTETAASRPPSKLGLPPGRTITVENAIYALVTKSANDV 125
Query: 120 AVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A + E+L + F Q M ++ +G+++T F NA G+ TTA DMA L R+
Sbjct: 126 AALLGETLGAGSEARFAQMMTLRARAMGMTSTTFRNASGLPDVEQITTAHDMATLGRRLL 185
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
DFP+ HYF + + N N + + G DG+KTG+ SGFNIV SA + +
Sbjct: 186 HDFPERYHYFGTRTHRMGSIALRNHNRMLDEYEGVDGIKTGYINDSGFNIVTSARRSNVR 245
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYN 266
L+ + G R++ +A+LL GF
Sbjct: 246 LVVAVFGGSSWVERDRHAAALLERGFSQ 273
>gi|313668657|ref|YP_004048941.1| D-alanyl-D-alanine carboxypeptidase [Neisseria lactamica ST-640]
gi|313006119|emb|CBN87580.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria lactamica
020-06]
Length = 388
Score = 172 bits (434), Expect = 8e-41, Method: Composition-based stats.
Identities = 75/323 (23%), Positives = 130/323 (40%), Gaps = 10/323 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ ++D + ++ D P PA+L +LMTAY+VF LK
Sbjct: 33 AASSPQTPETLAAAHIVIDLQSRQTLSAKNIDAPVEPAALAQLMTAYLVFKNLKSGNIRP 92
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFV 135
+ I ++A + S + G ++ D LK +IV SAND A+ +A + + FV
Sbjct: 93 EETLKIRESAWKSEGSRMFVRPGGSVRTDTLLKGMIVLSANDAALTLAGRLGNGSIENFV 152
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
+ MN ++ LG+ T F N G+ Q +TARD+A+L+ + DFP+Y F IK +
Sbjct: 153 KQMNEEARRLGMKNTLFRNPTGLSQERQVSTARDLALLAEALMRDFPEYYPLFSIKSFKF 212
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ + N N + +G+K G T + G+N+ S + ++ + LG+ TR
Sbjct: 213 ENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRASD 272
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE------EVCTTQKEIINYNTQ 309
++ LL+ K Q + + KE
Sbjct: 273 NSKLLNRALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEVYITLPHKEAKTAEQI 332
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
++ + K +L
Sbjct: 333 LET---IQPLRAPVRKGQVLGKI 352
>gi|167749174|ref|ZP_02421301.1| hypothetical protein EUBSIR_00125 [Eubacterium siraeum DSM 15702]
gi|167657852|gb|EDS01982.1| hypothetical protein EUBSIR_00125 [Eubacterium siraeum DSM 15702]
Length = 389
Score = 172 bits (434), Expect = 8e-41, Method: Composition-based stats.
Identities = 74/349 (21%), Positives = 143/349 (40%), Gaps = 20/349 (5%)
Query: 1 MRQF---LVIIAMAMLSNIFPFLS------IAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+++ + A+A+++ + + + + +TG V+ E+
Sbjct: 4 IKRITAVVTAFALAVVTQGASLTAFSEGDVSEADSITKAAIVTEVSTGQVLYEHNSHERL 63
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS+TKLM + +++ + T IT + A+ S G M+ + ++ +
Sbjct: 64 PMASVTKLMCLLIWAEEMEKGTFGMDTVITATARANAMDGSVIWLNVGEEMSAYDMIRSV 123
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ SAND VA+ E + TE+ FV+ MN ++ LG+S TH+ N G HYT+A D A
Sbjct: 124 VIASANDACVAVCEYIAGTEEMFVERMNKRAQELGMSDTHYDNCVGFDSDTHYTSAYDTA 183
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+LS +++ Y +F + + + + NTN + + G G KTG T +G
Sbjct: 184 LLSA-AVSEYDCYNEFFATRLDYVREGERQTQLLNTNKLMQRYDGIIGGKTGTTDKAGCC 242
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNL 285
+ A +G+ L AV LG + R LL+ GF + + ++
Sbjct: 243 LAVWAKRGNMKLCAVALGCKESEQRFTACTDLLNHGFSGFELYRTAVDSDVLTPVTVTEG 302
Query: 286 SNEVPNISEE----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +I + + + + EK+ ++
Sbjct: 303 LEKQADIRVKRLNTIVIPKGSSKRIEYTHTVVDSLSAPVQYGEKVGEVR 351
>gi|160931610|ref|ZP_02079005.1| hypothetical protein CLOLEP_00442 [Clostridium leptum DSM 753]
gi|156869481|gb|EDO62853.1| hypothetical protein CLOLEP_00442 [Clostridium leptum DSM 753]
Length = 381
Score = 172 bits (434), Expect = 8e-41, Method: Composition-based stats.
Identities = 70/349 (20%), Positives = 136/349 (38%), Gaps = 23/349 (6%)
Query: 3 QFLVIIAMAMLSNIFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ ++A A + + A + L+ + V+ E + AS TK
Sbjct: 10 KLCALLAAAGILTSAGTPAAANGGEPSVSAKAAVLMTADNSTVLYEKAAEEKLPMASTTK 69
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MTA + + + + I+ S+ K G+ +TL + +++ S ND
Sbjct: 70 IMTALLTLEAAQAE----DRQVKITDEMVRVEGSSMGLKPGNVVTLTALAQGMLLCSGND 125
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A A A ++ + ++F + MN +K +G+ T+F+ G+ HYTTA DMA+L
Sbjct: 126 AANAAAIAIAGSTEEFAKLMNQRAKQIGMKNTNFVTPSGLDDENHYTTAYDMALLGAC-A 184
Query: 179 TDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ ++ K ++++ + N N + + G G+KTGFT SG +V+ A
Sbjct: 185 MENQRFREIASQKSMQVQFVEPDMKYTFGNHNRLLTAYEGCIGVKTGFTKKSGRCLVSCA 244
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN-----KTDRKKINYIIKDFYQQNLSN 287
+ L+AV L A D ++L GF D + ++ +
Sbjct: 245 ERDGVRLVAVTLNAPDD---WNDHKAMLDYGFSKVKQVSFDDTALGLQVPVVGGVRDSIS 301
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ +E +++ + + + L +I K
Sbjct: 302 VNGAFTAGASVLAEEESGIEKRIEVPAFLYAPVRKGQTVGKLTYEINGK 350
>gi|325133984|gb|EGC56639.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M13399]
Length = 389
Score = 172 bits (434), Expect = 9e-41, Method: Composition-based stats.
Identities = 79/352 (22%), Positives = 141/352 (40%), Gaps = 24/352 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY--------------TLLDTNTGHVIAENYP 47
+ V++++ + + S A + ++D + ++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|237749357|ref|ZP_04579837.1| penicillin-binding protein 6. serine peptidase. merops family s11
[Oxalobacter formigenes OXCC13]
gi|229380719|gb|EEO30810.1| penicillin-binding protein 6. serine peptidase. merops family s11
[Oxalobacter formigenes OXCC13]
Length = 397
Score = 172 bits (434), Expect = 9e-41, Method: Composition-based stats.
Identities = 73/334 (21%), Positives = 141/334 (42%), Gaps = 14/334 (4%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
N+ A T + L+D + V+A + + +LMTAY+VF +K+ K
Sbjct: 35 NVHAAGVAAPTLTSRSWLLIDVVSNQVLASSNSQERIRAGTPARLMTAYLVFGAIKDGKL 94
Query: 75 MLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L +++S + GS++T+ L LIV+ + D A+ +A ++ EK
Sbjct: 95 NLDKTVSVSDEIGAMESGGPRMFLQPGSSVTIQQLLDGLIVQGSEDAALTLALAVSGDEK 154
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
FV MN + LG+ +T+F + + Y+T D+++L+ + D+P Y F +
Sbjct: 155 SFVDLMNREAVRLGMKSTNFTHPYETADKDSYSTPNDLSVLAVNLMRDYPDYYSGFSTRE 214
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG----DQSLIAVILGALD 248
N N + DG+ + ++V SA + ++ +++V++GA+
Sbjct: 215 FTYNKITQRNPNRLLWVDPTVDGL--VASAGVRDSMVVSARRDSILGERRMLSVVVGAVS 272
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVP---NISEEVCTTQKE 302
R + S LL+ GF N + + + S +V N+ V + E
Sbjct: 273 DQARAQESLKLLNWGFQNFDTIRLYEKNQVVASPEVWKGSSGDVDIGFNVDTYVSVPKGE 332
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
I T ++ + + ++ +LK + K
Sbjct: 333 ISRLKTVLERNDPLIAPINEGSQVGVLKILVGDK 366
>gi|255658320|ref|ZP_05403729.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
20544]
gi|260849639|gb|EEX69646.1| serine-type D-Ala-D-Ala carboxypeptidase [Mitsuokella multacida DSM
20544]
Length = 288
Score = 172 bits (434), Expect = 9e-41, Method: Composition-based stats.
Identities = 68/259 (26%), Positives = 117/259 (45%), Gaps = 13/259 (5%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
++ A ++D TG V+ E D PAS+TK+MT +
Sbjct: 20 VWSAVAMAAAPDITADAAIVIDEATGQVLYEKNADKREYPASMTKMMTCILALEKS---- 75
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+T+S NA++ + G T+ + + L+ +++ S N A A+ E++ E
Sbjct: 76 -SPDQLVTVSANAADVECTR--LYPGYTLRMADILQQMMMISDNGAATAVGEAVGGDEAS 132
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------HY 187
F MN ++ +G + THF+N +G+ HY+TARDM ++ +
Sbjct: 133 FAAMMNAKAQEIGATHTHFVNMNGMPDADHYSTARDMGKIAAYAMHNDAFRRIVGTKAKN 192
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ NTN + T+ G G+KTG+T A+ + A+A + + LIAV++ +
Sbjct: 193 IYYIVPQGHTTYCINTNELLDTYEGCTGIKTGWTSAARGCLSAAAKRDGKELIAVVMHSD 252
Query: 248 DRNTRNKVSASLLSMGFYN 266
D TR +A+LL GF
Sbjct: 253 DDETRFSEAAALLDYGFEQ 271
>gi|296332949|ref|ZP_06875407.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305672708|ref|YP_003864379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149913|gb|EFG90804.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305410951|gb|ADM36069.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 443
Score = 172 bits (434), Expect = 9e-41, Method: Composition-based stats.
Identities = 72/375 (19%), Positives = 135/375 (36%), Gaps = 40/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M ++ +A+ L+ + + +++ ++G ++ D AS+TK
Sbjct: 11 MSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNADKRLPIASMTK 70
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT Y++ + + K T E NS +K L +A
Sbjct: 71 MMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQATAIY 130
Query: 119 IAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY---------- 164
A A A ++ + +E KFV+ MN +K LGL+ F+NA G+ +
Sbjct: 131 SANAAAIAIAEVVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLHGHQPEGTSVD 190
Query: 165 ----TTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA------VGT 209
+A+DMAIL+ + TD+P+ + I + + PN N+
Sbjct: 191 EESEVSAKDMAILADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLVSEYK 250
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFYNK 267
DG+KTG T ++G +A +I V+L A R + + F N
Sbjct: 251 KATVDGLKTGSTDSAGSCFTGTAELNGMRVITVVLNAKGNLHTGRFDETKKMFDYAFNNF 310
Query: 268 TDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ ++ + + ++ K N + K +KE+
Sbjct: 311 SMKEIYAEGDQVKGHKTISVDKGKEKEVGIVTNKAFSLPVKNGEEKNYKAKVTLNKETLT 370
Query: 321 IDFEKITLLKNKITK 335
+K T + +
Sbjct: 371 APVKKGTKVGKLTAE 385
>gi|325135913|gb|EGC58523.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M0579]
Length = 389
Score = 172 bits (434), Expect = 9e-41, Method: Composition-based stats.
Identities = 81/324 (25%), Positives = 137/324 (42%), Gaps = 11/324 (3%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P L ET + ++D + +++ + P PA+LT+LMTAY+VF +K
Sbjct: 34 AAPTLQTPETLTA-AHIVIDLQSKQILSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIR 92
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKF 134
+ I ++A S + G T++ D LK +I SAND A+ +A + + F
Sbjct: 93 SEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENF 152
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
VQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK +
Sbjct: 153 VQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFK 212
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
K + N N + +G+K G T + G+N+ S + ++A+ LG+ TR
Sbjct: 213 FKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILAITLGSESAETRAS 272
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEIINYNT 308
++ LL+ K Q + + KE
Sbjct: 273 DNSKLLNWALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKMAEQ 332
Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 333 ILET---IQPIPAPVKKGQILGKI 353
>gi|291544371|emb|CBL17480.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13]
Length = 378
Score = 172 bits (434), Expect = 1e-40, Method: Composition-based stats.
Identities = 67/342 (19%), Positives = 127/342 (37%), Gaps = 18/342 (5%)
Query: 1 MRQFLVIIAMAM----LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M+++L ++ + L + Y L++ +TG V+ D AS
Sbjct: 1 MKKWLSLMLAVLCCLHLCCPAVHAADPLGISAQAYVLMEADTGKVLLSKNGDEKRPIAST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MT + L + A S+ ++G +T +++ S
Sbjct: 61 TKIMTTLLCLE-----SGGLDDWFVVDPEAIRVEGSSMGLQEGDVVTKRMLCYGMLLPSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A A A L + +F + MN + +G++ T F+ G+ GH + RDM +L+
Sbjct: 116 NDAANATAVRLAGSIPEFAKLMNARAARIGMTHTCFVTPSGLDAEGHGASVRDMGLLART 175
Query: 177 IKTDFPQYMHYFQIK-----GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
+ Q + G + NTN + + G G+KTGFT A+G +V+
Sbjct: 176 AMQNPDFRAICSQSRAEVCFGNPPYNRWLKNTNKLLTMYEGVVGVKTGFTDAAGRCLVSF 235
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI-IKDFYQQNLSNEVP 290
+ SL+ V L A D L GF + + + ++ V
Sbjct: 236 CERDGVSLLCVTLHAKDD---WNDHMKLYDYGFAHVVSQPVEPPDALSVSVVGGTADTVA 292
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + + + M + + + + + + N
Sbjct: 293 LRTRDPLSVGTDNGDLRQLMVQVQVEPFLYAPVPENARVGNL 334
>gi|161869810|ref|YP_001598979.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis 053442]
gi|161595363|gb|ABX73023.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis 053442]
Length = 389
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 78/352 (22%), Positives = 138/352 (39%), Gaps = 25/352 (7%)
Query: 3 QFLVIIAMAMLSNIFPFLSIA---------------ETNKLPYYTLLDTNTGHVIAENYP 47
+ L ++ +L + + ++D + ++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNRPTAHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPGDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|86357827|ref|YP_469719.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Rhizobium etli
CFN 42]
gi|86281929|gb|ABC90992.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
[Rhizobium etli CFN 42]
Length = 525
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 85/260 (32%), Positives = 139/260 (53%), Gaps = 2/260 (0%)
Query: 3 QFLVIIAMAMLSNIF-PFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ L I++M + + + AE Y ++D TG+V+ D PASLTK+M
Sbjct: 26 KLLAILSMTVTVVLVDSVNAEAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKMM 85
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A
Sbjct: 86 TLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAA 145
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+ E L +E +F Q M + LG++ T + NA+G+ TTARD A L ++
Sbjct: 146 TALGEMLGGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQH 205
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQY YF + + + + N VG+ G DG+KTG+T A+GFN+V+S +S++
Sbjct: 206 FPQYYGYFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIV 265
Query: 241 AVILGALDRNTRNKVSASLL 260
+V+LG R+ +L+
Sbjct: 266 SVVLGGASGPARDAQMRNLI 285
>gi|209549573|ref|YP_002281490.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209535329|gb|ACI55264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 291
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 84/261 (32%), Positives = 135/261 (51%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + LS+ + ++D +G V+ + D PASLTK+M
Sbjct: 1 MTKTTSRLLATALSSAVLLGAFTLAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L E + +T+S+NA P G +TL A++ ++V SAND A
Sbjct: 61 TLYLAFEALHEGRLTWDQKLTMSENAESKEPFKLAVGAGRQVTLREAVESIVVLSANDSA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE L +E+ F + M + ++ LG++ T F N G+ T+ARDMA L + D
Sbjct: 121 VAIAEQLGGSEQAFAKAMTDKARQLGMTNTVFRNPSGLPDPEQVTSARDMATLGISLMRD 180
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++ + ++
Sbjct: 181 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRVV 240
Query: 241 AVILGALDRNTRNKVSASLLS 261
V++G + R+ A LL
Sbjct: 241 GVVMGEKTASLRDDKMAGLLD 261
>gi|255528214|ref|ZP_05395035.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
carboxidivorans P7]
gi|255508087|gb|EET84506.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
carboxidivorans P7]
Length = 411
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 80/346 (23%), Positives = 136/346 (39%), Gaps = 24/346 (6%)
Query: 1 MRQFLVII--AMAMLSNI---FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ L+ + + +LS++ + T L+D TG+V+ D + PAS
Sbjct: 1 MKKLLIFMMSFVFLLSSVSLKAQAKADPPTVSADSVVLMDAITGYVLYGKNEDSAYPPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TKLMTA + K L +T+ KN S +G + + + L L+++S
Sbjct: 61 TTKLMTALLTLEKCK-----LDDVVTVGKNPPLVDGSKIYLFEGEQLKVRDLLYGLMLQS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND A A+AE + + F MN + LG +HF+N G+ H T+ARD+A++
Sbjct: 116 GNDCAEALAEHVGGSIDNFAVLMNKRALELGCRDSHFVNPSGLYDEKHKTSARDLALIMR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK-------YPNTNW-----AVGTFLGADGMKTGFTCA 223
++ P+Y EI N N + + G G KTG+T
Sbjct: 176 -ELSNKPEYTQIASTSFYEIPPTNKSAVKRPLWNENKLIQKSSQLYYDGCKGGKTGYTTQ 234
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
S + V+ + + Q LI ++ D+ T + +L + GF
Sbjct: 235 SLHSYVSYSTRNGQRLIVALVHDKDK-TFFPDAVNLFNYGFSTFESVLLYKKGDLVATYS 293
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
N VP ++ K + KD+ F+ +
Sbjct: 294 NNGVTVPLLAASDFYYVKLKEDTTVPKFVLKDENLSTKFFKTGDTI 339
>gi|329923410|ref|ZP_08278892.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
gi|328941302|gb|EGG37596.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
Length = 336
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 80/278 (28%), Positives = 128/278 (46%), Gaps = 19/278 (6%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ ++ + I K L+ +TG V+ + D P PAS++K+MT +V
Sbjct: 46 FGVILIGVFIARVFIPPPIKASSAILIHADTGRVLYAMHADLPLPPASMSKMMTELLVLE 105
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
++ + + +S+ A+E P S +G TL + LI+ SAND AVAIAE L
Sbjct: 106 AVRSGQHAWDENVPVSRYAAEVPGSAIGMHEGERYTLKQLFEALIIHSANDAAVAIAEHL 165
Query: 128 CKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQH------------GHYTTARDMAILS 174
+E +FV+ MN +K +GLS T F NA G+ TARD A+L+
Sbjct: 166 GGSEARFVESMNIRAKEIGLSDRTVFANASGLPAADLVPFAEAASEGDTVMTARDSAMLA 225
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWA----VGTFLGADGMKTGFTCASGFNI 228
+ P + + L + K+ TN + G DG KTG+T ++G+
Sbjct: 226 RWLVNKHPDLLEVTSQRDLPVPQKELSLHTTNLMLPGEPHAYQGNDGFKTGYTSSAGYCF 285
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+A +G LI+V++G D + R + L+ GF
Sbjct: 286 TGTASRGGNRLISVVMGTGDADQRFTETRKLMDYGFDR 323
>gi|255022591|ref|ZP_05294577.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase)
(DD-carboxypeptidase) (CPase) (Penicillin-binding
protein [Listeria monocytogenes FSL J1-208]
Length = 433
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 143/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 65 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN ++ L L F+N+ G+ + + TAR
Sbjct: 125 AISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQVGGPKDENKMTAR 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 185 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTG 244
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 245 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGAHTSARFDETNKMLDYAFNNFKVKEVQ 304
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K + ++++ +
Sbjct: 305 KAGSKVKDPSTIEVDKGKEDTVGLVTKDAVKLVVP-KNDNSPKLNTNVTLEEKTIEAPVK 363
Query: 325 KITLLKN 331
K T +
Sbjct: 364 KGTEVGK 370
>gi|153953521|ref|YP_001394286.1| DacA1 [Clostridium kluyveri DSM 555]
gi|146346402|gb|EDK32938.1| DacA1 [Clostridium kluyveri DSM 555]
Length = 407
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 78/332 (23%), Positives = 135/332 (40%), Gaps = 23/332 (6%)
Query: 1 MRQFLVIIAMAMLSN-IFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ + I ++ I P+ A + +LD TG V+ PD + PAS
Sbjct: 1 MKKIVTFILFFLIICYINPYNVYATQTLPSVSADSAVILDATTGEVLYAKNPDSAYPPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK+MTA + L +T+ KN + +G +T+ + L L++ S
Sbjct: 61 TTKIMTALLTLENT-----NLNDKVTVGKNPPLVDGTRIGLYEGEELTVKDLLYGLLLAS 115
Query: 116 ANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
AND A A+AE + + +KF MN + LG T+F+N G+ H T+A+D+A++
Sbjct: 116 ANDCAEALAEHIGNGSSEKFAIEMNKKAHELGAYNTNFVNPSGLFDEKHKTSAKDLALIM 175
Query: 175 WRIKTDFPQY------MHYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCA 223
+ + + K + N N + + G +G KTG+T
Sbjct: 176 KELCKNPEYSKIATTLYYTIPPTNKSPKERGVWNENKLIQPNSTYYYSGCEGGKTGYTTQ 235
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
S + V++A + Q LI ++ ++ T S SL + GF N + K +
Sbjct: 236 SLHSYVSAATRNGQRLIVALVHDKNK-TFFPDSISLFNFGFDNFSLVKLYSKGDLVTTYN 294
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
+ VP + K + K+
Sbjct: 295 KNNISVPLTAASDFYYVKNKDDAAVPSFTLKN 326
>gi|319406361|emb|CBI80002.1| penicillin-binding protein [Bartonella sp. AR 15-3]
Length = 367
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 112/323 (34%), Positives = 189/323 (58%), Gaps = 9/323 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MRQ + + + ++ L++A + +D TG ++ N W PASLTKLM
Sbjct: 1 MRQLFHTLFFSFILSMIGSLTLAHP-----FISVDATTGRILKHNQAFERWYPASLTKLM 55
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
YV+F + + ITISKNA++ P NS +K GS +TLD ALK+ +VKS ND+A
Sbjct: 56 MTYVIFRAMSTGEISPHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLA 115
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+AI+E++ +++ FV+ MN ++ LG+ T+F N G+ +Y+TARD+A+L+ +I+ +
Sbjct: 116 IAISEAISGSQEAFVKQMNAEAQRLGMFGTNFTNTSGLPNPNNYSTARDIALLAVQIRRE 175
Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF I ++ + N+N +G F G DGMKTGF CASGFN+VASA + ++
Sbjct: 176 FPQYTHYFSIPAIDFGNGQKIQSNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+I VILG+ N R + +A LL+ GF +K + ++ + + +++ ++ +++CT
Sbjct: 236 IIVVILGSDSINKREEKAAELLNAGFSDKGSPQSTLATLEPYGTKI--SQITDMRQQICT 293
Query: 299 TQKEIINYNTQMKEAKDKESHFI 321
+ ++ ++ + +
Sbjct: 294 PEAIKTRLDSYDEKGNIILTSPL 316
>gi|58039077|ref|YP_191041.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H]
gi|58001491|gb|AAW60385.1| D-alanyl-D-alanine carboxypeptidase [Gluconobacter oxydans 621H]
Length = 348
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 89/267 (33%), Positives = 141/267 (52%), Gaps = 2/267 (0%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
MR F + ++ + + A+ ++D TG V++ + PASLTKL
Sbjct: 1 MRFPFQKAFLLCAMTAMGLGSAKAQYAGHISSYVMDARTGAVLSATDAELQRYPASLTKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT Y+ F L+ + L + +S +AS PS G+ +T++ + L+ KSAND
Sbjct: 61 MTLYLTFRALEAHQITLDEQVPVSIHASVQAPSKLGLVPGTRLTVEQGILGLVTKSANDA 120
Query: 120 AVAIAESLCKTEK-KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A A+ E L ++ +F Q M ++ LG++ T F NA G+ TTA D+A+LS +
Sbjct: 121 ACALGEFLGGGDEVRFAQLMTQQARALGMTNTTFRNASGLPDPDQVTTAHDLALLSQHLI 180
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+DFPQY HYF + + PN + + + GADG+KTG+T +G N++ SA +G+
Sbjct: 181 SDFPQYYHYFNVPSFYFHRRMVPNHDPMLKIYAGADGLKTGYTDLAGHNLITSAQRGNVR 240
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFY 265
LI V++GA + R+ SLL GF
Sbjct: 241 LIGVVMGAPNNTRRSMEMVSLLDKGFA 267
>gi|325142125|gb|EGC64550.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
961-5945]
gi|325198078|gb|ADY93534.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
G2136]
Length = 389
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 80/328 (24%), Positives = 137/328 (41%), Gaps = 11/328 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ + P L ET + ++D + ++ + P PA+LT+LMTAY+VF +K
Sbjct: 30 LTVHAAPTLQTPETLTA-AHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKS 88
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKT 130
+ I ++A S + G T++ D LK +I SAND A+ +A +
Sbjct: 89 GNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGS 148
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+ FVQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F I
Sbjct: 149 IENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSI 208
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + K + N N + +G+K G T + G+N+ S + ++ + LG+
Sbjct: 209 KSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAE 268
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEII 304
TR ++ LL+ K Q + + KE
Sbjct: 269 TRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAK 328
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 329 MAEQILET---IQPIPAPVKKGQILGKI 353
>gi|218461037|ref|ZP_03501128.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli Kim 5]
Length = 294
Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats.
Identities = 85/261 (32%), Positives = 133/261 (50%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + + L + +LD +G V+ + D PASLTK+M
Sbjct: 6 MSKTTSRLLASALPFALLVGAFIPAEAGQASFVLDVQSGQVLEASNQDDLNYPASLTKMM 65
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L + + +T+S+NA P G +TL A++ ++V SAND A
Sbjct: 66 TLYLAFEALHDGRLTWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVESIVVLSANDSA 125
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE L +E+ F + M + ++ LG+ T F N G+ TTARDMA L + D
Sbjct: 126 VAIAEQLGGSEQAFARTMTDKARQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRD 185
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++G + ++
Sbjct: 186 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVV 245
Query: 241 AVILGALDRNTRNKVSASLLS 261
V++G R+ A LL
Sbjct: 246 GVVMGEKTAGLRDDKMAGLLD 266
>gi|47092644|ref|ZP_00230431.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 4b
H7858]
gi|47018939|gb|EAL09685.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str. 4b
H7858]
Length = 433
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 141/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 65 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN + L L F+NA G+ + + TAR
Sbjct: 125 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 185 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 244
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 245 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQ 304
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K K +++ +
Sbjct: 305 KAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNGNEPKLNTKVTMKEKTIEAPVK 363
Query: 325 KITLLKN 331
K T +
Sbjct: 364 KGTEVGK 370
>gi|227821811|ref|YP_002825781.1| penicillin-binding protein [Sinorhizobium fredii NGR234]
gi|227340810|gb|ACP25028.1| penicillin-binding protein [Sinorhizobium fredii NGR234]
Length = 498
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 86/252 (34%), Positives = 134/252 (53%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ +A + + + A N ++D TG V+ D PASLTK+MT Y+ F
Sbjct: 24 VVLAGVVAGLVYSAPALANSKYAGIVVDAKTGKVLYGEDADQLRYPASLTKMMTLYLTFE 83
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L+ + +TP+ SK A+ PPS + G +T++ A+ L+ +SAND A A+ E L
Sbjct: 84 ALEAGRISKSTPVPFSKKAAAEPPSKLGVRAGKAITVEQAVLSLVTRSANDAATALGELL 143
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E++F + M N ++ LG++ T + NA+G+ TTARD A L ++ FPQY Y
Sbjct: 144 GGSEQRFARMMTNKARALGMTRTTYRNANGLPNTEQKTTARDQARLGLALRQHFPQYYDY 203
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + + N N +G G DG+KTG+T ASGFN+V SA +S++AV++G
Sbjct: 204 FSTRSFRFGKQTIGNHNRLLGNVRGVDGIKTGYTRASGFNLVTSAQLDGRSIVAVVMGGT 263
Query: 248 DRNTRNKVSASL 259
R+ L
Sbjct: 264 SGGARDAQMRKL 275
>gi|4104145|gb|AAD01953.1| penicillin-binding protein homolog [Listeria monocytogenes]
Length = 433
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 141/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 65 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN + L L F+NA G+ + + TAR
Sbjct: 125 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 185 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 244
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 245 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQ 304
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K K +++ +
Sbjct: 305 KAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNGNEPKLNTKVTMKEKTIEAPVK 363
Query: 325 KITLLKN 331
K T +
Sbjct: 364 KGTEVGK 370
>gi|319783686|ref|YP_004143162.1| beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317169574|gb|ADV13112.1| Beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 469
Score = 171 bits (432), Expect = 1e-40, Method: Composition-based stats.
Identities = 94/319 (29%), Positives = 154/319 (48%), Gaps = 6/319 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + + L+ F F +A + ++D TG V+ + PASLTK+MT Y
Sbjct: 16 LKTMMIIALAMTFVFGDVASSLAAKQAAIVVDAKTGKVLYSADANGRRYPASLTKMMTLY 75
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ F + + K TP+ S AS P+ K G ++T++ A+ ++ KSAND A A+
Sbjct: 76 LTFEAMAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVTVETAILSIVTKSANDSATAL 135
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E L E F + M ++ LG++ T F NA+G+ G +TTARDMA L ++ FPQ
Sbjct: 136 GEMLGGNETTFARMMTAKARALGMNGTVFRNANGLPDPGQFTTARDMATLGIALREHFPQ 195
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
Y YF + ++ N +G G DG+KTG+T ASGFN+V+S G++ ++ V+
Sbjct: 196 YYGYFSQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNLVSSVSDGNRRIVGVV 255
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+G +R+ ASL++ + R D + N +V + +
Sbjct: 256 MGGSSGRSRDNQMASLINTYLPRASTR-----GGGDLVAKAGGNNPVTALAQVLLPKHDA 310
Query: 304 INYNTQMKEAKDKESHFID 322
+ + A+D + D
Sbjct: 311 PTPDDKPVVAQDDATVAED 329
>gi|319404878|emb|CBI78479.1| penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498]
Length = 368
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 117/320 (36%), Positives = 187/320 (58%), Gaps = 9/320 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M Q + + +I LS+A + +D TG ++ N W PASLTKLM
Sbjct: 1 MHQLFYTLFFFFILSIMSSLSLAHP-----FISVDATTGRILKHNQAFERWYPASLTKLM 55
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
Y++F + K ITISKNA++ P NS +K GS +TLD ALK+ +VKS ND+A
Sbjct: 56 MTYIIFRAMSTGKISPHKHITISKNAAQAPAINSGYKAGSVLTLDTALKITLVKSTNDLA 115
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+AI+E++ +++ FV+ MN ++ LG+ T+F N G+ +Y+TARDMA+L+ +I+ +
Sbjct: 116 IAISEAISGSQEAFVKQMNAEARRLGMFGTNFTNTSGLPNPNNYSTARDMALLAVQIRRE 175
Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF I ++ K N+N +G F G DGMKTGF CASGFN+VASA + ++
Sbjct: 176 FPQYTHYFSIPAIDFGNGKKIQSNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+I VILG+ N R + +A LL+ GF +K + ++ + + +++ ++ +++CT
Sbjct: 236 IIVVILGSESINKREEKAAQLLNAGFSDKGSPQSTLATLEPYGTKI--SQITDMRQQICT 293
Query: 299 TQKEIINYNTQMKEAKDKES 318
+ + N+ +E +
Sbjct: 294 PEAIKMRLNSYDEEGNIILT 313
>gi|88607085|ref|YP_505745.1| D-alanyl-D-alanine carboxypeptidase family protein [Anaplasma
phagocytophilum HZ]
gi|88598148|gb|ABD43618.1| D-alanyl-D-alanine carboxypeptidase family protein [Anaplasma
phagocytophilum HZ]
Length = 386
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 81/338 (23%), Positives = 145/338 (42%), Gaps = 9/338 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F I + + K P+ + + + ++ E+ D P AS++KLMT Y
Sbjct: 10 FKAFICALIFVLPAHPDASGLRTKAPHAIVFEWGSKTILFEHDVDAPTPTASMSKLMTLY 69
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V LK L + +S+ A+ + K G +++++ +K V S ND + +
Sbjct: 70 IVLKNLKAGNIKLEDNLRVSEGAASAGAPTAFLKTGQLISVNDLIKGAAVASGNDACITL 129
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE L +++KFV+ MN +K L L + F+N G + + RD+ ILS RI DFP+
Sbjct: 130 AEGLYTSQEKFVEEMNRVAKELDLKNSRFVNVTGWPD-DNMMSVRDLLILSARILQDFPE 188
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
Y ++F K G N N + DG+KTG T G+ +VASA++ + ++ V
Sbjct: 189 YYYFFGEKQFTYNGITQKNYNALLNYNNIEVDGIKTGHTRTGGYGMVASALKDGRRVLVV 248
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
I G R + L+ + + + + S +V +
Sbjct: 249 INGLSTETERAYEAKKLILYALNHFSTKTIFPANG--VVGEISVKHKKGTSLQVFLKEDA 306
Query: 303 IINYNTQMKEA-----KDKESHFIDFEKITLLKNKITK 335
++ Y ++ +ES +K L+ + + K
Sbjct: 307 VVTYPKDLEHELHAFLLSQESLKAPIKKGQLVGSLLVK 344
>gi|313901070|ref|ZP_07834558.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
gi|312954028|gb|EFR35708.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
Length = 395
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 85/344 (24%), Positives = 152/344 (44%), Gaps = 22/344 (6%)
Query: 1 MRQFLVI-IAMAMLSNIFPFLSIAETNK---------------LPYYTLLDTNTGHVIAE 44
M++ +V+ +++ + + P A+ +K L++ TG VI
Sbjct: 1 MKKLIVLCLSICLCMGLLPQQIHAQDDKTKQEPAQNAQDLAPSAKAAYLVENTTGKVIYA 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
+ PAS+TK+M ++F L +KK ++ S+ A+ S + G +M++
Sbjct: 61 KHETDKLYPASMTKMMGLLLIFEALHDKKISWDESVSASEYAASMGGSQVFLEPGESMSV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ +K + + SAND VA+AE + + FV MN+ +K L LS +HFMNA G+ HY
Sbjct: 121 RDMVKSICIASANDAMVAMAEKVGGSNDHFVAMMNDKAKELKLSNSHFMNATGLHDPEHY 180
Query: 165 TTARDMAILSWRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
T A+DM+I++ + + + + + I+ K NTN + + G DG+KT
Sbjct: 181 TCAKDMSIIARALIAEGGEELLRITSTYDAYIRENTDKKFWLVNTNKLLKQYEGVDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
GFT + I +A + D L+AV +G RN +L GF K
Sbjct: 241 GFTTEAMSCITVTAKKKDLRLVAVAMGEPSSKQRNAEIKQMLDYGFSQYAQGLLYPKGTK 300
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
+ + +++ + ++ KE K + + D
Sbjct: 301 LKTYTMENGKPSSVNLVTLKDLVYVFEKGSEPKEQKKEITITKD 344
>gi|330839897|ref|YP_004414477.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
ATCC 35185]
gi|329747661|gb|AEC01018.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
ATCC 35185]
Length = 376
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 79/330 (23%), Positives = 137/330 (41%), Gaps = 17/330 (5%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ L++ +TG V+ E D P PAS TK+MT +
Sbjct: 18 TARAGAAENIQITAASAILIEASTGRVLYEKAADVPRFPASTTKMMTCVLAIEE-----G 72
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L++ +T+S+ A+E + G L + ++++S N +VAIAE L + F
Sbjct: 73 DLSSILTVSRTAAETEDT--EVGAGDRFVLAELVAEMMLRSDNGASVAIAEDLAGSVGSF 130
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-PQYMHYFQIKGL 193
HMN +K +G THF+N +G+ H +TA D+A ++ + + + + +
Sbjct: 131 AAHMNEKAKAIGAKDTHFLNPNGLPDPAHVSTAHDIARIAAYGMKNPKFRSFVGTKEREI 190
Query: 194 EI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
K + NTN + T+ GA G+KTG+T A+G + ASA +G LIAV+LGA D
Sbjct: 191 TWVTPEKKRARMANTNRLLSTYEGATGIKTGYTNAAGGCLAASARRGGVELIAVVLGAAD 250
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYII--KDFYQQNLSNEVPNI--SEEVCTTQKEII 304
R +A LL MGF + + + + +E++ +
Sbjct: 251 EEARFSDAAKLLDMGFRRVKAAPAYTKTDLARRVWVKGGKEGRLAVYPTEDLRLPLVDGE 310
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
++ + + +
Sbjct: 311 AEENYRLTYDLPRVIAAGVKEGDRVGDLVV 340
>gi|260888699|ref|ZP_05899962.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
ATCC 35185]
gi|260861568|gb|EEX76068.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
ATCC 35185]
Length = 438
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 79/330 (23%), Positives = 137/330 (41%), Gaps = 17/330 (5%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ L++ +TG V+ E D P PAS TK+MT +
Sbjct: 80 TARAGAAENIQITAASAILIEASTGRVLYEKAADVPRFPASTTKMMTCVLAIEE-----G 134
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L++ +T+S+ A+E + G L + ++++S N +VAIAE L + F
Sbjct: 135 DLSSILTVSRTAAETEDT--EVGAGDRFVLAELVAEMMLRSDNGASVAIAEDLAGSVGSF 192
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-PQYMHYFQIKGL 193
HMN +K +G THF+N +G+ H +TA D+A ++ + + + + +
Sbjct: 193 AAHMNEKAKAIGAKDTHFLNPNGLPDPAHVSTAHDIARIAAYGMKNPKFRSFVGTKEREI 252
Query: 194 EI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
K + NTN + T+ GA G+KTG+T A+G + ASA +G LIAV+LGA D
Sbjct: 253 TWVTPEKKRARMANTNRLLSTYEGATGIKTGYTNAAGGCLAASARRGGVELIAVVLGAAD 312
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYII--KDFYQQNLSNEVPNI--SEEVCTTQKEII 304
R +A LL MGF + + + + +E++ +
Sbjct: 313 EEARFSDAAKLLDMGFRRVKAAPAYTKTDLARRVWVKGGKEGRLAVYPTEDLRLPLVDGE 372
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
++ + + +
Sbjct: 373 AEENYRLTYDLPRVIAAGVKEGDRVGDLVV 402
>gi|307572345|emb|CAR85524.1| dacA [Listeria monocytogenes L99]
Length = 433
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 143/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 65 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN ++ L L F+N+ G+ + + TAR
Sbjct: 125 AISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQVGGPKDENKMTAR 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 185 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTG 244
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 245 TTDYAGMCLTATAVQDGMRVITVVLHANGEAPGAHTSARFDETNKMLDYAFNNFKVKEVQ 304
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K + ++++ +
Sbjct: 305 KAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNDNSPKLNTNVKLEEKTIEAPVK 363
Query: 325 KITLLKN 331
K T +
Sbjct: 364 KGTEVGK 370
>gi|49476281|ref|YP_034322.1| penicillin-binding protein [Bartonella henselae str. Houston-1]
gi|49239089|emb|CAF28392.1| Penicillin-binding protein [Bartonella henselae str. Houston-1]
Length = 368
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 115/320 (35%), Positives = 189/320 (59%), Gaps = 9/320 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ L + ++ + + L++A+ + +D TG ++ N W PASLTKLM
Sbjct: 1 MQRLLYKLFLSFVLSFTSSLALAQP-----FISVDVKTGRILEHNQAFERWYPASLTKLM 55
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV+F + + ITIS+ A++ P S +K GS +TLD AL + +VKS ND+A
Sbjct: 56 TAYVIFRAMSRGEISSNKHITISEYAAKAPTYRSGYKAGSVLTLDTALSITMVKSTNDLA 115
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A++E++ ++K FV+ MN ++ LG+ THF NA G+ +Y+TARD+A+L+ +I+ +
Sbjct: 116 IAMSEAVAGSQKAFVKKMNAEAQRLGMFGTHFANASGLPDPNNYSTARDIALLAIQIRRE 175
Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF I ++ K+ PN+N +G F G DGMKTGF CASGFN+VASA + ++
Sbjct: 176 FPQYAHYFSIPAIDFGNKRKIQPNSNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+IAVILG+ + + R K +A LL GF + + ++ + + ++ ++ CT
Sbjct: 236 IIAVILGSKNISEREKKAAKLLETGFSRQGSLQLTLETLEPYGTKMTHAR--DMRQQTCT 293
Query: 299 TQKEIINYNTQMKEAKDKES 318
+ +N N+ + +
Sbjct: 294 PEAVKMNANSYDDQGNIILT 313
>gi|225871200|ref|YP_002747147.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi
4047]
gi|225700604|emb|CAW95134.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
subsp. equi 4047]
Length = 411
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 76/365 (20%), Positives = 146/365 (40%), Gaps = 31/365 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ +V +A M + + ++ TG ++ ASLTKL+
Sbjct: 1 MKKLIVTLAALMCLITNTSFAENFSVNSRQAIAVEMTTGKILYAKEAQQKAPIASLTKLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V +K + + +T+S+ A + P ++ + T+ ++ ++ SAN
Sbjct: 61 TVYLVLKEIKAGRLQWDSQVTLSEYALQLATDPDISNPAFEQRPYTIKELVESSLIISAN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
AVA+AE + +E FV M + G+ +NA G+ +
Sbjct: 121 SSAVALAEHIAGSEPTFVDMMKKQLEAWGIRDYLLVNASGLNNSMLKGHLYPGSQPDDEN 180
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
TARD+A+++ ++ DFP+ + L+ K P++N + G DG+KTG
Sbjct: 181 QMTARDLALIAQQLIQDFPELLTISSQPQLKWGEKALPSSNLLLAGREMGRAGVDGLKTG 240
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINY 275
T +G ++A+A+Q + +I+VIL A D R + LL F + K +
Sbjct: 241 TTSQAGQTMIATAVQDNMRVISVILHADQSDTDERARFVETNRLLDYCFNSYALEKLVAQ 300
Query: 276 IIKDFYQQNLSNEVP-----NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + S+ + + + + KDK + + +
Sbjct: 301 NQVLPERLIVKQAAKQRLRVKASQTLTVVRPKDQTELSYSLRIKDK-ALKAPIRQNKKVG 359
Query: 331 NKITK 335
I +
Sbjct: 360 TLIYQ 364
>gi|321313677|ref|YP_004205964.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
gi|320019951|gb|ADV94937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
Length = 443
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 73/375 (19%), Positives = 143/375 (38%), Gaps = 40/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M ++ +A+ L+ + + +++ ++G ++ D AS+TK
Sbjct: 11 MSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNADKRLPIASMTK 70
Query: 59 LMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
+MT Y++ + + K + + + + SN +K T+ + +
Sbjct: 71 MMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQATAIY 130
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY---------- 164
SAN A+AIAE + +E KFV+ MN +K LGL+ F+NA G+ +
Sbjct: 131 SANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLHGHQPEGTSVN 190
Query: 165 ----TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA------VGT 209
+A+DMAIL+ + TD+P+ + I + + PN N+
Sbjct: 191 EESEVSAKDMAILADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLVSEYK 250
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFYNK 267
DG+KTG T ++G +A + +I V+L A R + + F N
Sbjct: 251 KATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLNAKGNLHTGRFDETKKMFDYAFDNF 310
Query: 268 TDRKKINYIIKD-------FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ ++ + + ++ K N + K +K++
Sbjct: 311 SMKEIYAEGDQVKDHKTISVDKGKEKEVGIVTNKAFSLPVKNGEEKNYKAKVTLNKDNLT 370
Query: 321 IDFEKITLLKNKITK 335
+K T + +
Sbjct: 371 APVKKGTKVGKLTAE 385
>gi|150390086|ref|YP_001320135.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
metalliredigens QYMF]
gi|149949948|gb|ABR48476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
metalliredigens QYMF]
Length = 441
Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats.
Identities = 84/367 (22%), Positives = 141/367 (38%), Gaps = 40/367 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ + + +++ IF F + P LLD TG V+ + PA
Sbjct: 1 MKKSVSLFLTCVITLIFMFNPDISHGEGKPSITAPNGVLLDFQTGEVLYDKNAHEITYPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S TK +TA +V L IT+ + S KG T++ L +L+++
Sbjct: 61 STTKALTAILVLEN-----LELDEVITV-EEDMFVGGSGMYLLKGEAFTVNELLHVLMIR 114
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND+A +A + + + F MN +K LG +HF N HG+ H TTA D+A++
Sbjct: 115 SANDVAELLATHISGSVEAFADLMNRRAKELGALNSHFTNPHGLPDEEHVTTAYDLAMIG 174
Query: 175 WRIKTDFP------QYMHYFQIKGLEIKGKKYPNTNWAVG-----------------TFL 211
T + + + + Y NTN + +
Sbjct: 175 KHAITFDVLREIAGTVRYDVEPTEFTPETRYYRNTNRFLWGTGSGNQILYRGQYQNIKYD 234
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
+G+KTGFT A+ ++ASAIQGDQ I+V+LGA N S +L+ GF N +
Sbjct: 235 IVEGLKTGFTNAAQNCLIASAIQGDQRFISVVLGAQGVNV-YADSRALIDYGFENYQLVQ 293
Query: 272 KINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + + + ++ + K+ +
Sbjct: 294 LVEEQHYVTTEPLLKGVEDEVSLYSKDSLTKILPIDVDPSLIEKQLIINDELSAPILLEE 353
Query: 328 LLKNKIT 334
I
Sbjct: 354 TYGKIIY 360
>gi|240851366|ref|YP_002972769.1| penicillin-binding protein [Bartonella grahamii as4aup]
gi|240268489|gb|ACS52077.1| penicillin-binding protein [Bartonella grahamii as4aup]
Length = 363
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 115/327 (35%), Positives = 187/327 (57%), Gaps = 12/327 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + +++ ++F +++A+ + +D TGH++ N W PASLTKLM
Sbjct: 1 MQRLFYNLFFSVILSLFSAIALAQP-----FISVDVTTGHILKHNQAFERWYPASLTKLM 55
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV+F + + ITIS+ A++ P S +K GS +TLD AL + +VKS ND+A
Sbjct: 56 TAYVIFRAMSRGEISPNKHITISEYAAKAPSYRSGYKAGSVLTLDTALSITMVKSTNDLA 115
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A++E++ ++K FV+ MN+ +K LG+ THF NA G+ +Y+TARD+A+L+ +I+ +
Sbjct: 116 IAMSEAVAGSQKNFVRKMNSEAKRLGMFGTHFANASGLPDPQNYSTARDIALLAVQIRRE 175
Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF I ++ + N+N +G F G DGMKTGF CASGFN+VASA + ++
Sbjct: 176 FPQYAHYFSIPAIDFGNNRKIQHNSNNLIGRFYGIDGMKTGFICASGFNLVASATRNKRT 235
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+I VILGA + R + +A LL GF ++ + +K + + N+ ++ CT
Sbjct: 236 IITVILGANNITEREEKAAQLLETGFLHQGRPQLTLATLKPYGRNITQAN--NMRQQTCT 293
Query: 299 T---QKEIINYNTQMKEAKDKESHFID 322
+ +Y+ Q
Sbjct: 294 PEAIKMHANSYDDQGNIILTSPFITAP 320
>gi|150395730|ref|YP_001326197.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
WSM419]
gi|150027245|gb|ABR59362.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
WSM419]
Length = 405
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 88/261 (33%), Positives = 145/261 (55%), Gaps = 4/261 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M +F + +A + ++A ++D TG V++ PD +PASLTK+M
Sbjct: 1 MTRFRLALATIAVLFFGTAQAVA----GSASLVVDARTGRVLSAENPDTLNHPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L + TP+ +S A+ PP+ + G T+T+ A+ +IV+SAND A
Sbjct: 57 TLYMTFEALHRGQLAWKTPVPMSATAARKPPTKLGVRPGETITVQEAVYGMIVRSANDAA 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE L TE+ F + MN ++ LG++ T F+NA G+ TTARDMA L+ +
Sbjct: 117 AAMAERLGGTEEGFARMMNAKARQLGMNRTFFVNASGLPASEQVTTARDMARLAVALMRH 176
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+P+ F ++ +G+ N + + G DG+KTG+T ASG+N+V++ +G++ LI
Sbjct: 177 YPREYRLFSVQSFAFRGRVIRGHNNLMYRYQGMDGIKTGYTRASGYNLVSAVAEGNRRLI 236
Query: 241 AVILGALDRNTRNKVSASLLS 261
V+LG +R++ A+LL
Sbjct: 237 GVVLGGRSARSRDEKMAALLD 257
>gi|116252402|ref|YP_768240.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115257050|emb|CAK08144.1| putative D-alanyl-D-alanine carboxypeptidase [Rhizobium
leguminosarum bv. viciae 3841]
Length = 291
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 87/261 (33%), Positives = 136/261 (52%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + LS+ F + + ++D +G V+ + D PASLTK+M
Sbjct: 1 MTKTTSRLLATALSSFFLMGAFTQVQAGQASFVVDVQSGQVLEGSNQDDLNYPASLTKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L + + +T+S+NA P G +TL A++ ++V SAND A
Sbjct: 61 TLYLAFEALHDGRLNWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVEGIVVLSANDAA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE L TE+ F + M + + LG+ T F N G+ TTARDMA L + D
Sbjct: 121 VAIAEQLGGTEQVFAKAMTDKAHQLGMKDTVFRNPSGLPDPEQVTTARDMATLGVSLMRD 180
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++ + ++
Sbjct: 181 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRVV 240
Query: 241 AVILGALDRNTRNKVSASLLS 261
V++G + R+ ASLL
Sbjct: 241 GVVMGEKTASIRDDKMASLLD 261
>gi|220904314|ref|YP_002479626.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868613|gb|ACL48948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 258
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 76/247 (30%), Positives = 126/247 (51%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L++ +TG ++ D PASLTK+MT Y+ ++ K I I+ +
Sbjct: 4 RSAILINMDTGKILYAKNADMAIPPASLTKVMTMYLAMDQIRAGKIKPGEKIRITPQVAA 63
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S+ + G + L L + V S ND A A+A + +++FV+ MN +K LG++
Sbjct: 64 VGGSSMHLRAGERVALSQLLTGMAVVSGNDAATAVARRVGGNDRQFVRAMNQKAKALGMN 123
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
T F N G+ G TTARDMA ++ P + Y ++ L + +K NTN +G
Sbjct: 124 RTTFKNPTGLPAAGQKTTARDMARMTRAYLRSHPSALRYHSVQLLTYRDRKTRNTNGLLG 183
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
T G +G+KTG+T ASG+N++ + +G ++AV++G R R+ + L+ GF +
Sbjct: 184 TVAGVNGLKTGWTVASGYNLIVTGQRGKTRMLAVVMGGTSRVGRDNAARRLIEAGFRHPA 243
Query: 269 DRKKINY 275
KK+
Sbjct: 244 SPKKVQQ 250
>gi|51893513|ref|YP_076204.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
IAM 14863]
gi|51857202|dbj|BAD41360.1| D-alanyl-D-alanine carboxypeptidase [Symbiobacterium thermophilum
IAM 14863]
Length = 424
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 89/290 (30%), Positives = 132/290 (45%), Gaps = 17/290 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET-----NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+++ IIA A+L + L + L+D TG V+ E PD AS
Sbjct: 10 LKRLRAIIACALLLTLLLRLPASADDTWYETSAESGILMDCATGQVLWEKNPDERLAIAS 69
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK+MTA + + L +TI A S +G+T TL L+ LI++S
Sbjct: 70 TTKIMTALLAIESGR-----LDETVTIPPEAELIEGSKVYLTQGTTYTLRELLEALILES 124
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND AVAIA L +E+ FV+ MN ++ LGL+ T F N HG+ + GHY++ARD+A L
Sbjct: 125 ANDAAVAIAIFLGGSEEAFVRQMNEKARALGLTDTQFRNPHGLDEDGHYSSARDLARLGR 184
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKY------PNTNWAVGTFLGADGMKTGFTCASGFNIV 229
D P Y + L + N N + A G+K G+T A+ F +V
Sbjct: 185 VAMAD-PVYREIAGTEWLTFPWPEMETTREIYNRNLLIQRMPEATGVKNGYTEAALFTLV 243
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
SA + +I V+LG D+ LL G Y+ + ++
Sbjct: 244 GSAAADGREVIGVLLGNPDKEQMYADMERLLRHGLYDFSLTTVLSAGDLP 293
>gi|261377658|ref|ZP_05982231.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria cinerea ATCC
14685]
gi|269145924|gb|EEZ72342.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria cinerea ATCC
14685]
Length = 389
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 77/349 (22%), Positives = 141/349 (40%), Gaps = 18/349 (5%)
Query: 2 RQFLVIIAMAMLSNIF--------------PFLSIAETNKLPYYTLLDTNTGHVIAENYP 47
+ + +++ + S+ P + + D + ++
Sbjct: 5 KALSIFLSVILGSSPATADSFFPNRLPANIPSSPQTPETLTAAHIVTDLQSKQTLSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF LK + I ++A + S + G+ + D+
Sbjct: 65 NAPVEPAALTQLMTAYLVFKNLKSGNIRPEETLKIRESAWKSDGSRMFVRPGNLIRTDDL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A+ + + F++ MN ++ LG+ T F N G+ Q +T
Sbjct: 125 LKGMIALSANDAALTLADKLGNGSIENFIKQMNEEARRLGMKDTLFKNPTGLSQERQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
ARD+A+LS + DFP+Y F IK + K + N N + G +G+K G T + G+
Sbjct: 185 ARDLALLSEALILDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDSGVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQ 283
N+ S + ++ + LG+ R ++ LL+ + K + K
Sbjct: 245 NLAVSYTGNGRHILVITLGSESAEIRASDNSKLLNWALQSFDTPKIHSAGEIVTKIQVLG 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
V + T + + + K +L
Sbjct: 305 GSKKNVHAGFPKGVYITLPHTQAKTAEQILETIQPLRAPVRKGQVLGKI 353
>gi|239831909|ref|ZP_04680238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
LMG 3301]
gi|239824176|gb|EEQ95744.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
LMG 3301]
Length = 426
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 79/307 (25%), Positives = 143/307 (46%), Gaps = 8/307 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+I + A+ + + + + + + D ++G ++ ++ + PASL K+MT Y+
Sbjct: 33 LIASFALGAGVLCTSA---SMASTSWVVFDADSGRILGQDDANIQHAPASLAKMMTLYLA 89
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F LK + + ISKNA+ K G T+T+ +A+ +IV SAND A + E
Sbjct: 90 FEALKTGRLHWDDAMPISKNAASKVRMKLWLKPGETITVHDAIYGMIVISANDAATVMGE 149
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQY 184
+ +E F + M ++ +G+ +T F+N G+ TTARDMAIL ++ DFP+
Sbjct: 150 YMAGSEAAFGRLMTQRARQIGMKSTFFVNPSGLTAKATQLTTARDMAILGMSLRRDFPEQ 209
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F + + + N + + G DG+KTG+T SG+N+V+SAI D+ L+ V+L
Sbjct: 210 YALFSTRSFTFRNRVLNGHNTLMYRYQGVDGIKTGYTDVSGYNLVSSAIINDKHLVGVVL 269
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
GA R+ A LL + + + + +
Sbjct: 270 GAGSARQRDDQMAKLL----TRFSTEGAETKGQLVAMAKPQPVAKQTAAAQPKADAVAGL 325
Query: 305 NYNTQMK 311
+++++
Sbjct: 326 IDDSRIE 332
>gi|308389049|gb|ADO31369.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
meningitidis alpha710]
Length = 389
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 80/324 (24%), Positives = 135/324 (41%), Gaps = 11/324 (3%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P L ET + ++D + ++ + P PA+LT+LMTAY+VF +K
Sbjct: 34 AAPTLQTPETLTA-AHIVIDLQSRQTLSAKNINTPVEPAALTQLMTAYLVFKNMKSGNIQ 92
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKF 134
+ I ++A S + G T++ D LK +I SAND A+ +A + + F
Sbjct: 93 SEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALSANDAALTLAGRLGNGSIENF 152
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
VQ MN ++ LG+ T F N G+ + G +TA+D+A LS + DFP+Y F IK +
Sbjct: 153 VQQMNKEARRLGMKNTVFKNPTGLSREGQVSTAKDLAQLSEALMRDFPEYYPLFSIKSFK 212
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
K + N N + +G+K G T + G+N+ S + ++ + LG+ TR
Sbjct: 213 FKNIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRAS 272
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEIINYNT 308
++ LL+ K Q + + KE
Sbjct: 273 DNSKLLNWALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKMAEQ 332
Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 333 ILET---IQPIPAPVKKGQILGKI 353
>gi|255021081|ref|ZP_05293134.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
51756]
gi|254969495|gb|EET27004.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
51756]
Length = 299
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 84/276 (30%), Positives = 125/276 (45%), Gaps = 13/276 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
L ++A AML + + Y L++ TG ++A + P+ AS+T
Sbjct: 8 LLSLVACAMLLHSTSARAQNIVQAGLPVIDARAYILMNAETGQILATKHAYRPYAIASIT 67
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KLMT Y++F L+ L A S + G T+ + + V S N
Sbjct: 68 KLMTLYLLFQDLQSGHLSLQQQFKPCPAALHTGGSTMDLRAGVPFTVAQMILGMTVPSGN 127
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D AV A + + FV+ MN T++ LG+ +T F + G+ + + D+A+L+ I
Sbjct: 128 DAAVEAAHLVSGSVPAFVRKMNRTARQLGMLSTQFYDPDGLPHPNNTASPYDIALLTRAI 187
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
T FPQYM +FQ + G YPN N VG GMK+G+T A+G +VA+ Q
Sbjct: 188 MTQFPQYMPFFQHEHFTYGGITYPNPNLLVGRVPFITGMKSGYTDAAGHCLVATGTQDGV 247
Query: 238 SLIAVILGALD--RNTR-----NKVSASLLSMGFYN 266
LIAV+LG R + S LL GF
Sbjct: 248 KLIAVVLGVPSFHDEARGFWKASWQSLKLLDWGFAR 283
>gi|118591083|ref|ZP_01548482.1| hypothetical protein SIAM614_15692 [Stappia aggregata IAM 12614]
gi|118436159|gb|EAV42801.1| hypothetical protein SIAM614_15692 [Stappia aggregata IAM 12614]
Length = 561
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 98/282 (34%), Positives = 150/282 (53%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ A N ++D TG + + D PASLTK+MT Y+VF L+ + L +
Sbjct: 27 PATAMANPKYAGIVVDAKTGKTLYSSSADSYRYPASLTKIMTLYLVFEELEAGRLSLDSN 86
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+++S AS PPS K G T+ + +A+ L+ KSAND+A IAE+L +EKKF + M
Sbjct: 87 LSVSSYASARPPSKLGLKPGGTIKVKDAILALVTKSANDVASVIAENLGGSEKKFAERMT 146
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
T++ +G+S T F N HG+ +G TTARDMA L I+ FPQY YF+ + + KG+
Sbjct: 147 RTARQIGMSKTTFRNPHGLPDNGQRTTARDMATLGRAIQERFPQYYGYFKTRAYKYKGRT 206
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
Y N N +G G DG+KTG+ ASGFN+V S + + ++AV++G +RN L
Sbjct: 207 YGNHNKLLGRVKGVDGIKTGYIRASGFNLVTSVNRDGRHIVAVVMGGKTGASRNAQMTKL 266
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301
++ + K +I + V + + T+
Sbjct: 267 INAYLPKASRGPKTAPLIVQNTSEPTFVAVALKNPPLPNTKP 308
>gi|319409433|emb|CBI83082.1| Penicillin-binding protein [Bartonella schoenbuchensis R1]
Length = 357
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 116/310 (37%), Positives = 183/310 (59%), Gaps = 9/310 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MRQ L + ++ + ++ L++A + +D TG ++ N W PASLTKLM
Sbjct: 1 MRQLLYSLCLSFILSMTSTLALAYP-----FISVDAATGRILQHNQAFERWYPASLTKLM 55
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T YV+F + + ITISKNAS+ PS+S ++ GS +TL+ AL + +VKSAND+A
Sbjct: 56 TTYVIFRAMSTGEISPQKHITISKNASQASPSHSGYEAGSILTLETALSITLVKSANDLA 115
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A++E++ +++ FVQ MN ++ LG+ THF NA G+ +YTTARD+A+L+ +I+ +
Sbjct: 116 IALSEAVSGSQEAFVQQMNVQAQRLGMFGTHFANASGLPHPDNYTTARDIALLAVQIRRE 175
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF I ++ + N+N + F G DGMKTGFTCASGFN+VASA + ++
Sbjct: 176 FPQYAHYFSIPAIDFGDGRKIKFNSNNLINRFYGTDGMKTGFTCASGFNLVASATRNKRT 235
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+IAV+LG N R +A LL GF + + +K + + ++ ++ E++C
Sbjct: 236 IIAVVLGLDTINAREGKAAQLLETGFSLQGSAQSTLATLKPYGTKMT--QITDMEEQICD 293
Query: 299 TQKEIINYNT 308
+
Sbjct: 294 PEVVKKRIED 303
>gi|222147779|ref|YP_002548736.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
[Agrobacterium vitis S4]
gi|221734767|gb|ACM35730.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
[Agrobacterium vitis S4]
Length = 442
Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats.
Identities = 87/260 (33%), Positives = 136/260 (52%), Gaps = 4/260 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L+ +++ + ++ LLD TG VIA D P +PASLTK+M
Sbjct: 1 MSRTLIALSLFVSISMMAS----PVLAGSAQLLLDARTGRVIASENADMPNHPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+VF ++ +P+ SK AS PP+ K G +T+ A+ ++ SAND A
Sbjct: 57 TIYMVFDAIRRGTLSWDSPVPFSKYASSRPPTKLRLKPGEEITVREAVLGMVTLSANDAA 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE L TE+ F M ++ LG+ T F+NA G+ TTARDM+ L + D
Sbjct: 117 AAMAEKLGGTEENFAAMMTAKARQLGMPNTTFVNASGLPDDRQITTARDMSTLGVALLRD 176
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F + +G+ N + + G DG+KTG+T ASG+N+V++ G + +I
Sbjct: 177 FPRDYALFSTRSFAFRGRTINGHNNLMYRYKGMDGIKTGYTNASGYNLVSAVADGKRRVI 236
Query: 241 AVILGALDRNTRNKVSASLL 260
VI+G +R+ + A L+
Sbjct: 237 GVIMGGRSGASRDNLMAQLI 256
>gi|291482380|dbj|BAI83455.1| penicillin-binding protein 5 [Bacillus subtilis subsp. natto
BEST195]
Length = 443
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 73/375 (19%), Positives = 143/375 (38%), Gaps = 40/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M ++ +A+ L+ + + +++ ++G ++ D AS+TK
Sbjct: 11 MSLVVLTLAVTCLAPMSKAKAASDPIDINASAAIMIEASSGKILYSKNADKRLPIASMTK 70
Query: 59 LMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
+MT Y++ + + K + + + + SN +K T+ + +
Sbjct: 71 MMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSLSNVPLRKDGKYTVKELYQATAIY 130
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY---------- 164
SAN A+AIAE + +E KFV+ MN +K LGL+ F+NA G+ +
Sbjct: 131 SANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYKFVNATGLENKDLHGHQPEGTSVN 190
Query: 165 ----TTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA------VGT 209
+A+DMAIL+ + TD+P+ + I + + PN N+
Sbjct: 191 EESEVSAKDMAILADHLITDYPEILETSSIAKTKFREGTDDEMDMPNWNFMLKGLVSEYK 250
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFYNK 267
DG+KTG T ++G +A + +I V+L A R + + F N
Sbjct: 251 KATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLYAKGNLHTGRFDETKKMFDYAFDNF 310
Query: 268 TDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ ++ + + ++ K N + K +K++
Sbjct: 311 SMKEIYAEGDQVKGHKTVSVDKGKEKEVGIVTNKAFSLPVKNGEEKNYKAKVTLNKDNLT 370
Query: 321 IDFEKITLLKNKITK 335
+K T + +
Sbjct: 371 APVKKGTKVGKLTAE 385
>gi|304387808|ref|ZP_07369982.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Neisseria
meningitidis ATCC 13091]
gi|304338073|gb|EFM04209.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Neisseria
meningitidis ATCC 13091]
Length = 389
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 76/352 (21%), Positives = 137/352 (38%), Gaps = 25/352 (7%)
Query: 3 QFLVIIAMAMLSNIFPFLSIA---------------ETNKLPYYTLLDTNTGHVIAENYP 47
+ L ++ +L + + ++D + ++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNRPTAHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIRSEENLKIPESAWASEGSRMFVRPCDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A+LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ R ++ LL+ K Q
Sbjct: 245 NLAVSYTGNGRHILVITLGSESAEIRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|219854143|ref|YP_002471265.1| hypothetical protein CKR_0800 [Clostridium kluyveri NBRC 12016]
gi|219567867|dbj|BAH05851.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 415
Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats.
Identities = 78/332 (23%), Positives = 135/332 (40%), Gaps = 23/332 (6%)
Query: 1 MRQFLVIIAMAMLSN-IFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ + I ++ I P+ A + +LD TG V+ PD + PAS
Sbjct: 9 MKKIVTFILFFLIICYINPYNVYATQTLPSVSADSAVILDATTGEVLYAKNPDSAYPPAS 68
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK+MTA + L +T+ KN + +G +T+ + L L++ S
Sbjct: 69 TTKIMTALLTLENT-----NLNDKVTVGKNPPLVDGTRIGLYEGEELTVKDLLYGLLLAS 123
Query: 116 ANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
AND A A+AE + + +KF MN + LG T+F+N G+ H T+A+D+A++
Sbjct: 124 ANDCAEALAEHIGNGSSEKFAIEMNKKAHELGAYNTNFVNPSGLFDEKHKTSAKDLALIM 183
Query: 175 WRIKTDFPQY------MHYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCA 223
+ + + K + N N + + G +G KTG+T
Sbjct: 184 KELCKNPEYSKIATTLYYTIPPTNKSPKERGVWNENKLIQPNSTYYYSGCEGGKTGYTTQ 243
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
S + V++A + Q LI ++ ++ T S SL + GF N + K +
Sbjct: 244 SLHSYVSAATRNGQRLIVALVHDKNK-TFFPDSISLFNFGFDNFSLVKLYSKGDLVTTYN 302
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
+ VP + K + K+
Sbjct: 303 KNNISVPLTAASDFYYVKNKDDAAVPSFTLKN 334
>gi|288556011|ref|YP_003427946.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
gi|288547171|gb|ADC51054.1| D-alanyl-D-alanine carboxypeptidase (serine) [Bacillus pseudofirmus
OF4]
Length = 382
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 86/356 (24%), Positives = 154/356 (43%), Gaps = 30/356 (8%)
Query: 1 MRQFLVI--IAMAMLSNIFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ +VI I + +I P + + + +++ +G ++ AS
Sbjct: 2 MKKTVVIGLIFFLLSFSIAPQIEVEARNFSVSAEAAIMMEQESGRILYAKNDQTSLRIAS 61
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MTA + K + + IS NA S+ + G +M L++ + L+++S
Sbjct: 62 ITKIMTALLAIESGK-----MQEQVKISTNAEGTEGSSIYLRAGESMLLEDLVYGLMLRS 116
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILS 174
ND AVAIAE + + + FV MN ++ LG++ T F N HG+ H HY++A DMA+L+
Sbjct: 117 GNDAAVAIAEHVGGSLEGFVYLMNEKARELGMNQTQFQNPHGLDDHEDHYSSAYDMALLT 176
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAVGT-FLGADGMKTGFTCASGFNIVA 230
+ P Y K + G + + N N + + + G KTGFT + +V+
Sbjct: 177 RY-AMESPLYQEISSAKTHRVDGDQIRVWHNKNRLLTELYEYSTGGKTGFTKRARRTLVS 235
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI---------IKDFY 281
+A + D LI V L A +L + F + + + KD
Sbjct: 236 TASKDDLDLIVVTLNAPSD---WHDHMNLFNWAFDSFSLETLVEEGMFKDIKDEFYKDHV 292
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL--LKNKITK 335
+ E P + E Q+++ Y +E +D+ K+ + KI +
Sbjct: 293 FSPYTFEYPLLGSEKEMVQQKVTLYRPPTEEERDQYVPPHPVGKVDITLSGEKIGQ 348
>gi|241204910|ref|YP_002976006.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240858800|gb|ACS56467.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 292
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 86/261 (32%), Positives = 136/261 (52%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + LS++F + ++D +G V+ + D PASLTK+M
Sbjct: 2 MTKTTSRLLATALSSVFLMGAFTLAQAGQASFVVDVQSGQVLEGSNQDDLNYPASLTKMM 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L + + +T+S+NA P G +TL A++ ++V SAND A
Sbjct: 62 TLYLAFEALHDGRLNWDQKLTMSENAESKEPFKLAVGAGRKVTLREAVEGIVVLSANDAA 121
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE L +E+ F + M + + LG+ T F N G+ TTARDMA L + D
Sbjct: 122 VAIAEQLGGSEQVFAKAMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRD 181
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++ + ++
Sbjct: 182 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKDGRRVV 241
Query: 241 AVILGALDRNTRNKVSASLLS 261
V++G + R+ ASLL
Sbjct: 242 GVVMGEKTASIRDDKMASLLD 262
>gi|167922874|ref|ZP_02509965.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei BCC215]
Length = 315
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 75/268 (27%), Positives = 127/268 (47%), Gaps = 9/268 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ A +S + A + + ++D ++G + + D PASLTKLMTAYV F
Sbjct: 28 LFAALFVSAACAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAF 87
Query: 67 SFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
L+ +T++ + G + + + ++ LIV SAND A+ +
Sbjct: 88 DALERDALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVL 147
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+ R+ DFP
Sbjct: 148 AKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPA 207
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI------QGDQ 237
+ + + N N +G DGMKTG T A+G+ +V +A +
Sbjct: 208 FYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARH 267
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFY 265
+IAV+LG R + +LL GF
Sbjct: 268 RVIAVLLGEPTEKQRLADARALLDQGFA 295
>gi|328541732|ref|YP_004301841.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum
SL003B-26A1]
gi|326411484|gb|ADZ68547.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum
SL003B-26A1]
Length = 458
Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats.
Identities = 98/262 (37%), Positives = 148/262 (56%), Gaps = 3/262 (1%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ +L F A + + ++D ++G V+ E W PASLTK+MTAYV
Sbjct: 10 ALSFGVLIAAFLAAVQAPPARADIGSWIVIDADSGQVLDEFQGTRRWYPASLTKMMTAYV 69
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
++E ++ L + +T S+N+ PPS FK G+ MT+D ALK+++VKSANDIAVA+
Sbjct: 70 TLKAIREGRSSLDSAVTQSQNSLAQPPSKMGFKVGTQMTVDTALKIVMVKSANDIAVALG 129
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E++ TE FV MN + LG+ THF N HG+ + ++A DMAIL+ ++ DFP+
Sbjct: 130 EAIGGTEANFVALMNAEAARLGMRDTHFANPHGLPDNRQVSSALDMAILARALRRDFPEA 189
Query: 185 MHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
Y+ GL + + N GADGMKTG+ C SG+N+ ASA + +++IAV+
Sbjct: 190 RGYYGHAGLTFGKQTLRSANREFLLRVPGADGMKTGYICNSGYNVAASATRRGRTVIAVV 249
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
LGA R + + GF
Sbjct: 250 LGASSGLERTAFAREAIDKGFR 271
>gi|218666016|ref|YP_002426742.1| D-alanyl-D-alanine carboxypeptidase, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218518229|gb|ACK78815.1| D-alanyl-D-alanine carboxypeptidase, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 323
Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 80/269 (29%), Positives = 122/269 (45%), Gaps = 7/269 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
LV I + + S Y L++ +TG +IA P+ AS+TKLMT Y+
Sbjct: 39 LVAIFLFCIPRAEAETSGLPPIDARAYILMNADTGAIIATKNAYRPYAIASITKLMTLYL 98
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+F + L + A + S+ G T+ + + V S ND AV A
Sbjct: 99 LFKDIDSGHLQLNQHFVPCRAALQTGGSSMFMHPGMPFTIAQLILGMTVPSGNDAAVETA 158
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
+ + FV MN T++ +G+ +T F + G+ + + D+A+L+ + T FPQ+
Sbjct: 159 HLVAGSVPAFVAEMNRTARKIGMLSTTFYDPDGLPHPNNMASPYDVAVLTRTLMTQFPQF 218
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
M +F+ + G PN N VG GMK+G+T A+G +VA+ Q SLIAVIL
Sbjct: 219 MPFFRHENFTYAGITSPNPNLLVGRVPFITGMKSGYTDAAGHCLVATGTQNGISLIAVIL 278
Query: 245 GALD--RNTR-----NKVSASLLSMGFYN 266
G R + S LL GF
Sbjct: 279 GVPSFRDEGRGFWRASWQSLKLLDWGFAR 307
>gi|255029224|ref|ZP_05301175.1| hypothetical protein LmonL_09016 [Listeria monocytogenes LO28]
Length = 432
Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 77/367 (20%), Positives = 141/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 4 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 63
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + K +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 64 LEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN + L L F+NA G+ + + TAR
Sbjct: 124 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 183
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 184 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 243
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 244 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQ 303
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K K +++ +
Sbjct: 304 KAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNGNAPKLNTKVTMKEKTIEAPVK 362
Query: 325 KITLLKN 331
K T +
Sbjct: 363 KGTEVGK 369
>gi|150397770|ref|YP_001328237.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
WSM419]
gi|150029285|gb|ABR61402.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium medicae
WSM419]
Length = 376
Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 116/308 (37%), Positives = 176/308 (57%), Gaps = 9/308 (2%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
L+ + P + ++D +T V W PASLTKLMTAY+ F
Sbjct: 22 CAIFLAAVLPASANPR-------LVIDVDTLKVYEHQDIFQKWYPASLTKLMTAYITFRA 74
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+K + L +P+ ++KNA+ PPS +K G MTLD+ALK+++VKSAND+AVAIAE++
Sbjct: 75 IKADQLTLESPVVMTKNAASEPPSKMFYKPGQKMTLDSALKMMLVKSANDVAVAIAETVG 134
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
TE+ F++ MN ++ +G++++ F+N HG+ G YTTARD+A+L+ +K +FPQY YF
Sbjct: 135 GTEQAFIERMNAEARRIGMTSSRFINPHGLPGEGQYTTARDLAVLAVTLKREFPQYASYF 194
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
++G K YPN N +G F GADGMKTGF CASGFN V+SA++ + +++V+LG
Sbjct: 195 ALEGFTTGKKDYPNYNMLIGRFEGADGMKTGFICASGFNQVSSAVRSGRRVVSVVLGEDS 254
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R SA LL K I + + V ++S E+C+ Q +
Sbjct: 255 LGARADESARLLQKALTTVATDKPSLAEIPPYGE--SREVVADVSREICSKQAAKVRSEG 312
Query: 309 QMKEAKDK 316
+ + + K
Sbjct: 313 RDEAGRQK 320
>gi|253682546|ref|ZP_04863343.1| D-alanyl-D-alanine carboxypeptidase DacF [Clostridium botulinum D
str. 1873]
gi|253562258|gb|EES91710.1| D-alanyl-D-alanine carboxypeptidase DacF [Clostridium botulinum D
str. 1873]
Length = 391
Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 79/331 (23%), Positives = 150/331 (45%), Gaps = 14/331 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
L ++ ++ + + + + L++ +TG +I + + PAS+TK+MT
Sbjct: 12 LLAVLFISQIFVVNVKAAEGSLDVEAKAGLLMEPSTGKIIYKKNVHEKFAPASVTKIMTM 71
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDI 119
+ + K L+ + +S+NA + + + G T+++ LK + + S ND
Sbjct: 72 LLTMEAIDSGKIKLSDTVVVSENAKKMGKNGSSSMLLDTGEVRTVEDLLKGVAIASGNDA 131
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A A+AE + +E +FV+ MN ++ LG+ T F N HG+ + GH T+A D++I+S +
Sbjct: 132 ATALAEYIGGSESRFVEMMNKRAQQLGMKDTTFKNCHGLSKEGHLTSAYDISIMSCELLK 191
Query: 180 DF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ I + N N V + G DG+KTGFT + + I A+A++
Sbjct: 192 HKKILKYSGTYMETISEGRKNPIELVNHNKLVRFYKGCDGLKTGFTNEAKYCISATAVRN 251
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK------INYIIKDFYQQNLSNEV 289
+ ++A+I+GA RN+ ++ L++ GF +K + II D +
Sbjct: 252 NIRMLAIIVGAPTYKVRNRDASMLMNYGFSKFESKKIVTKDSDVEKIILDKKGEKFFFAK 311
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
V + + KDK+ +
Sbjct: 312 AKNDLNVVLERGSKNKITKKCVLNKDKKEYK 342
>gi|225174843|ref|ZP_03728840.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
AHT 1]
gi|225169483|gb|EEG78280.1| Serine-type D-Ala-D-Ala carboxypeptidase [Dethiobacter alkaliphilus
AHT 1]
Length = 371
Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 70/323 (21%), Positives = 119/323 (36%), Gaps = 16/323 (4%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
LLD TG ++ AS TK+MTA + + L
Sbjct: 19 LAVAMETPDVTARAAVLLDQETGRILFSKNAHERLPMASTTKIMTAILAIESGR-----L 73
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+T+S+ AS S G TL+ L L+++S ND A AIAE L + +KF +
Sbjct: 74 DEMVTVSEYASLVEGSGVDLDAGEQKTLEELLYGLMLRSGNDAATAIAEHLAGSVEKFAR 133
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD--MAILSWRIKTDFPQYMHYFQIKGLE 194
M + LG + T F N HG+ HYTTA D + + +F + + + +
Sbjct: 134 QMTRRAGELGAAQTRFENPHGLEAENHYTTAYDLGIIAVYAMSLPEFREVVATSEKRISW 193
Query: 195 IKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
N N + + ADG+KTG+T +G V S+ + L++V+L A
Sbjct: 194 TGRPYDRILYNQNKLLDMYEYADGIKTGWTTPAGRCFVGSSNKDGWGLVSVVLNAP---Q 250
Query: 252 RNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + L+ G+ + ++ ++ V ++ + +
Sbjct: 251 MWEDTIELMEFGYSYYHWEPLVEEGRHLKTAQVERGTADRVTLVAGNDLGLPLKENEADV 310
Query: 309 QMKEAKDKESHFIDFEKITLLKN 331
E E +
Sbjct: 311 LRYEFNVAEPLRAPVSAGDEVGT 333
>gi|239825594|ref|YP_002948218.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
gi|239805887|gb|ACS22952.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
Length = 450
Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 81/357 (22%), Positives = 138/357 (38%), Gaps = 34/357 (9%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ S + L+D NTG ++ + D AS+TK+MT Y++ +KEK+
Sbjct: 24 FRVAKAASDPLNIEADAAILVDANTGRILYQKNIDTVLGIASMTKMMTEYLLLEAIKEKR 83
Query: 74 AMLTTPITISKNASE----YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
T S SN +K T+ + + + SAN VAIAE +
Sbjct: 84 VKWDQQYTPSDYVYRLSQDRSLSNVPLRKDEKYTVRELYEAMAIYSANAATVAIAEIVGG 143
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSW 175
+E+ FV+ MN +K LGL F+N+ G+ + +AR +A L++
Sbjct: 144 SEQNFVKMMNEKAKQLGLKGYKFVNSTGLSNEDLKGFHPEGTNEREENVMSARSVATLAY 203
Query: 176 RIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMKTGFTCASGF 226
+ ++P+ + + K N NW V + G DG+KTG+T +G+
Sbjct: 204 HLLKEYPEVLETASTPRKIFREGTDDQIKMDNWNWMLPGLVREYEGVDGLKTGYTEFAGY 263
Query: 227 NIVASAIQGDQSLIAVILGALDR-----NTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+A + I V++ A R + + LL GF N + +K +
Sbjct: 264 CFTGTAERDGVRFITVVMNAKSNGKSTIEARFEQTEKLLHYGFSNYSIKKLYPKGYQLKG 323
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI--TKK 336
+ L T K +E + + D +K+T + KK
Sbjct: 324 KSTLPVVKGKEKSVAIVTDKPFFLVVKNGEEKNYRPVYVFDQKKLTDKGELVAPIKK 380
>gi|86749513|ref|YP_486009.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris HaA2]
gi|86572541|gb|ABD07098.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris HaA2]
Length = 573
Score = 170 bits (429), Expect = 3e-40, Method: Composition-based stats.
Identities = 91/302 (30%), Positives = 157/302 (51%), Gaps = 1/302 (0%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
++D NTG ++ PD +PASLTK+MT Y++F L+ K L + + +S +A
Sbjct: 51 PAFASIIVDANTGATLSATNPDAVRHPASLTKIMTLYLLFERLEAGKLSLDSEMEVSAHA 110
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
S P+ + G T+ +++A+K L+ +SAND AV IAE++ +E +F + M ++ LG
Sbjct: 111 SSQAPTKLGLRPGQTLRVEDAIKALVTRSANDAAVVIAETVGGSEAEFARMMTRKARALG 170
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+S T + N++G+ TTARD +IL I+ FP+Y YF +G N N
Sbjct: 171 MSRTVYRNSNGLPNDDQVTTARDQSILGRAIQDRFPRYYRYFATTTFNYRGASIRNHNRL 230
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+G G DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+
Sbjct: 231 LGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEK 290
Query: 267 KTDRKKINYIIK-DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
R+ + I++ ++ ++P+ + + + E + +
Sbjct: 291 GATRRTVAAIVERSPSSTQVAEDMPDSRPSPTVQVQGAVQVASAAPEPIETVARPAPPAP 350
Query: 326 IT 327
IT
Sbjct: 351 IT 352
>gi|198284088|ref|YP_002220409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198248609|gb|ACH84202.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 317
Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 80/269 (29%), Positives = 122/269 (45%), Gaps = 7/269 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
LV I + + S Y L++ +TG +IA P+ AS+TKLMT Y+
Sbjct: 33 LVAIFLFCIPRAEAETSGLPPIDARAYILMNADTGAIIATKNAYRPYAIASITKLMTLYL 92
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+F + L + A + S+ G T+ + + V S ND AV A
Sbjct: 93 LFKDIDSGHLQLNQHFVPCRAALQTGGSSMFMHPGMPFTIAQLILGMTVPSGNDAAVETA 152
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
+ + FV MN T++ +G+ +T F + G+ + + D+A+L+ + T FPQ+
Sbjct: 153 HLVAGSVPAFVAEMNRTARKIGMLSTTFYDPDGLPHPNNMASPYDVAVLTRTLMTQFPQF 212
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
M +F+ + G PN N VG GMK+G+T A+G +VA+ Q SLIAVIL
Sbjct: 213 MPFFRHENFTYAGITSPNPNLLVGRVPFITGMKSGYTDAAGHCLVATGTQNGISLIAVIL 272
Query: 245 GALD--RNTR-----NKVSASLLSMGFYN 266
G R + S LL GF
Sbjct: 273 GVPSFRDEGRGFWRASWQSLKLLDWGFAR 301
>gi|190892030|ref|YP_001978572.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652]
gi|218516887|ref|ZP_03513727.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
etli 8C-3]
gi|190697309|gb|ACE91394.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
etli CIAT 652]
Length = 290
Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 86/261 (32%), Positives = 135/261 (51%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + LS+ A+ ++D +G V+ + D PASLTK+M
Sbjct: 1 MTKMTSRLRATALSSALLISGFAQAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L + + +T+S+NA P G +TL A++ ++V SAND A
Sbjct: 61 TLYLAFEALHQGRLTWEQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE L +E+ F + M + ++ LG+ T F N G+ TTARDMA L + D
Sbjct: 121 VAIAEQLGGSEQAFAKAMTDKARQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRD 180
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++G + ++
Sbjct: 181 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVV 240
Query: 241 AVILGALDRNTRNKVSASLLS 261
V++G R+ A LL
Sbjct: 241 GVVMGEKTAGLRDDKMAGLLD 261
>gi|254824881|ref|ZP_05229882.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
J1-194]
gi|293594121|gb|EFG01882.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
J1-194]
Length = 445
Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 141/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 17 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 76
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 77 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN + L L F+NA G+ + + TAR
Sbjct: 137 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 197 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 256
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 257 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQ 316
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K K +++ +
Sbjct: 317 KAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNGNEPKLNTKVTMKEKTIEAPVK 375
Query: 325 KITLLKN 331
K T +
Sbjct: 376 KGTEVGK 382
>gi|290891934|ref|ZP_06554931.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
J2-071]
gi|290558528|gb|EFD92045.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
J2-071]
Length = 433
Score = 170 bits (429), Expect = 4e-40, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 139/367 (37%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 65 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN ++ L L F+N+ G+ + + TAR
Sbjct: 125 AISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQVGGPKDENKMTAR 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 185 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTG 244
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 245 TTDYAGMCLTATAVQDGMRVITVVLHANGEAPGAHTSARFDETNKMLDYAFNNFKVKEVQ 304
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK---------ESHFIDFE 324
K + + V K+ + + K ++ +
Sbjct: 305 KAGSK-VKNPSTIAVDKGKEDTVGLVTKDAVKLVVSKNDNSPKLNTNVKLEEKTIEAPVK 363
Query: 325 KITLLKN 331
K T +
Sbjct: 364 KGTEVGE 370
>gi|254851941|ref|ZP_05241289.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
R2-503]
gi|254994152|ref|ZP_05276342.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
J2-064]
gi|255520022|ref|ZP_05387259.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
J1-175]
gi|300763487|ref|ZP_07073485.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
N1-017]
gi|258605239|gb|EEW17847.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
R2-503]
gi|300515764|gb|EFK42813.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
N1-017]
Length = 445
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 141/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 17 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 76
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 77 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN + L L F+NA G+ + + TAR
Sbjct: 137 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 197 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 256
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 257 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQ 316
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K K +++ +
Sbjct: 317 KAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNGNEPKLNTKVTMKEKTIEAPVK 375
Query: 325 KITLLKN 331
K T +
Sbjct: 376 KGTEVGK 382
>gi|167582899|ref|ZP_02375773.1| family S11 unassigned peptidase [Burkholderia thailandensis TXDOH]
Length = 333
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 73/276 (26%), Positives = 127/276 (46%), Gaps = 13/276 (4%)
Query: 3 QFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ + ++ + A + + ++D ++G + + D PASLTK
Sbjct: 27 RLFAALFVSAACAAPNGAQAAPAQAPGIQAVSWLVVDADSGKTLGAHNVDARREPASLTK 86
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKS 115
LMTAYV F L+ +T++ + G + + + ++ LIV S
Sbjct: 87 LMTAYVAFDALERAALRWDETVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVAS 146
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+ +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+
Sbjct: 147 ANDAALVLAKRIGGSPAGFATLMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQ 206
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-- 233
R+ DFP + + + N N +G DGMKTG T A+G+ +V +A
Sbjct: 207 RLNRDFPAFYTFSSQRHFAYGAFSKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRP 266
Query: 234 ----QGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ +IAV+LG R + +LL GF
Sbjct: 267 IGGARAPHRVIAVLLGEPTEKQRLADARALLDQGFA 302
>gi|254472440|ref|ZP_05085840.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudovibrio
sp. JE062]
gi|211958723|gb|EEA93923.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudovibrio
sp. JE062]
Length = 447
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 103/267 (38%), Positives = 156/267 (58%), Gaps = 6/267 (2%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+FL + A+A+ S + + + + L+D + G V+ N W PASLTK+MTA
Sbjct: 13 RFLAVFAVALGSLLSTARA-----DIAAWLLMDADNGQVLEHNAAFDRWYPASLTKMMTA 67
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
YV F + ++ + +S+NA PPS FK G+T+TLDNALK+++VKSANDIAVA
Sbjct: 68 YVAFQHISRGDMAMSDMVMVSQNALNQPPSKMGFKVGTTITLDNALKMILVKSANDIAVA 127
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + TE+ F+ MN ++ +G+ T+F+N HG+ + TTARDMAIL+ + FP
Sbjct: 128 VAERVGGTEENFITMMNANARRMGMLHTNFVNPHGLPDNRQVTTARDMAILARELWNKFP 187
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
QY Y G+ + + + N GA+GMKTG+ C SGFN+ SA + +++IA
Sbjct: 188 QYRSYMSHPGIRFGRRTFRSGNRDFLLRTAGANGMKTGYICNSGFNVATSATRNGRTVIA 247
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKT 268
++LGA R+ + L+ GF T
Sbjct: 248 IVLGAASSLERSAFAKKLIDSGFKKTT 274
>gi|254804742|ref|YP_003082963.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
meningitidis alpha14]
gi|254668284|emb|CBA05194.1| putative D-alanyl-D-alanine carboxypeptidase [Neisseria
meningitidis alpha14]
Length = 389
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 77/352 (21%), Positives = 137/352 (38%), Gaps = 25/352 (7%)
Query: 3 QFLVIIAMAMLSNIFPFLSIA---------------ETNKLPYYTLLDTNTGHVIAENYP 47
+ L ++ +L + + ++D + ++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNRPTVHAAPTLQTPETLTAAHIVIDLQSRQTLSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T+ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVGTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A+LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLALLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ R ++ LL+ K Q
Sbjct: 245 NLAVSYTGNGRHILVITLGSESAEIRASDNSKLLNWALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|326791358|ref|YP_004309179.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
DSM 5427]
gi|326542122|gb|ADZ83981.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
DSM 5427]
Length = 382
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 75/351 (21%), Positives = 135/351 (38%), Gaps = 25/351 (7%)
Query: 1 MRQFLVIIAMA----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ +++ + ++S++ S + L++ +G V+ E P AS
Sbjct: 1 MKKKIILSFILIGSMLVSSLCYANSELPKVRAKGAVLIEQESGRVLYEKNGYEPLAMAST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MT + L +TISK AS PP K G L + L L+++S
Sbjct: 61 TKIMTCILAIEK-----GNLLDVVTISKRASSAPPVKLHLKVGEKQRLGDLLYALMLQSD 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND AVA+AE + + + F + M +K +G T F +G+ GHY +A DM ++
Sbjct: 116 NDAAVAVAEHIAGSVEAFCEQMTEKAKEIGAEHTSFKTPNGLDAEGHYASAYDMTLIGAY 175
Query: 177 IKTDFPQYM-------HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ I N N ++ GA+G+KTGFT +G V
Sbjct: 176 ALKNPEFVKIITTATIQIPTIPTEGSHTYGLQNKNRFFYSYEGANGIKTGFTNKAGHCFV 235
Query: 230 ASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285
+A + D LI LG+ + + ++++ GF +
Sbjct: 236 GAAYKNDMQLIGAALGSGWGKAGKTQKYTDVINMMNYGFKYYKKYTLVEPQRNIAKVAIE 295
Query: 286 SNEVPNISEE----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++S + + E+ N +K+ K ++
Sbjct: 296 KALIESLSLDCDETIILPLTEVEKANVYIKKV-VPTQLVAPVHKRDIIGEV 345
>gi|331269461|ref|YP_004395953.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum
BKT015925]
gi|329126011|gb|AEB75956.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum
BKT015925]
Length = 379
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 79/349 (22%), Positives = 155/349 (44%), Gaps = 18/349 (5%)
Query: 5 LVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ I+ ++ + + + + L++ +TG V+ E + PAS+TK+MT
Sbjct: 1 MAILFISQICVVNVKAAEGSLDVEAKAGILMEPSTGKVVFEKNVHEKFAPASVTKIMTML 60
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIA 120
+ + K LT + +S+NA + + + G T+++ LK + + S ND A
Sbjct: 61 LTMEAIDSGKIKLTDTVVVSENAKKMGKNGSSSMLLDTGEVRTVEDLLKGVAIASGNDAA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + +E FV+ MN ++ LG+ T F N HG+ + GH T+A D++I+S +
Sbjct: 121 TALAEYIGGSESSFVEMMNKRAQQLGMKDTTFKNCHGLSKEGHLTSAYDISIMSRELLKH 180
Query: 181 F----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+ I K + N N V + G DG+KTGFT + + I A+A++ +
Sbjct: 181 KKILKYSGTYMETISEGRKKPIELVNHNKLVRFYKGCDGLKTGFTNEAKYCISATAVRNN 240
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY----QQNLSNEVPNI 292
++A+I+GA RN+ ++ L++ GF +K + ++
Sbjct: 241 IRMLAIIVGAPTYKVRNRDASMLMNYGFSKFESKKIVTKDSDVEKISLDKKGEKFFFAKA 300
Query: 293 SEEVCTTQKEIINYNTQMK------EAKDKESHFIDFEKITLLKNKITK 335
+ + K + + K++ I + ++ + + K
Sbjct: 301 KNDFNVVVERGEKNKITKKCVLNKDKKEYKQNEIIGYCEVYVNDKLLGK 349
>gi|313616580|gb|EFR89415.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria innocua FSL
S4-378]
Length = 433
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 72/367 (19%), Positives = 141/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + +TIS+ A + SN + G ++ + + + SAN A+
Sbjct: 65 LEAIDKGQLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYSVQELYEAMAIYSANGAAI 124
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN ++ L L F+N+ G+ + TAR
Sbjct: 125 AISEKIAGSEKEFVDLMNKKAEELKLGDHQFVNSTGLNNEDLKGGQQVGGPTDENKMTAR 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 185 GMAKLAKHLIDDYPDVLKTASTTKKEFRKGTSDQIDMSNWNWLLPGLIYGRKGVDGLKTG 244
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q ++ V+L A + R + +L F N ++
Sbjct: 245 TTDYAGMCLTATAVQDGMRVVTVVLHANGGGKGEHTSARFDETNKMLDYAFNNFKVKEVQ 304
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ + + ++ K K +++ +
Sbjct: 305 KAGSKVKNPSTIAVDKGKEDTVGLITKDAVKLVVP-KNDNEPKLSTKVKLKEKTLEAPVK 363
Query: 325 KITLLKN 331
K T +
Sbjct: 364 KNTEVGE 370
>gi|195978797|ref|YP_002124041.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.2 [Streptococcus
equi subsp. zooepidemicus MGCS10565]
gi|195975502|gb|ACG63028.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.2 [Streptococcus
equi subsp. zooepidemicus MGCS10565]
Length = 411
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 77/365 (21%), Positives = 146/365 (40%), Gaps = 31/365 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ +V +A M L+ + ++ TG ++ ASLTKL+
Sbjct: 1 MKKLIVTLAALMCLITNTSLAEDFSVNSRQAIAVEMTTGKILYAKEAQQKAPIASLTKLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V +K + + + +S+ A + P ++ + T+ ++ ++ SAN
Sbjct: 61 TVYLVLKEIKAGRLQWDSQVILSEYALQLATDPDISNPAFEQRPYTIKELVESSLIISAN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
AVA+AE + +E FV M + G+ +NA G+ +
Sbjct: 121 SSAVALAEHIAGSEPTFVDMMKKQLEAWGIRDYRLVNASGLNNSMLKGHLYPGSQPDDEN 180
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
TARD+A+++ ++ DFP+ + L+ K PN+N + G DG+KTG
Sbjct: 181 QMTARDLALIAQQLLQDFPEVLTISSQAQLKWGEKDLPNSNLLLAGREMARTGVDGLKTG 240
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINY 275
T +G ++A+A+Q + +I+VIL A D R + LL F + T K +
Sbjct: 241 TTSQAGQTMIATAVQDNMRVISVILHADQSDTDERARFVETNRLLDYCFNSYTLEKLVAQ 300
Query: 276 IIKDFYQQNLSNEVP-----NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + ++ + + + + KDK + +
Sbjct: 301 NQVLPERLIVKQAAKQRLRVKANQSLMVVRPKDQTQLSYSLRIKDKV-LKTPIRQNKKVG 359
Query: 331 NKITK 335
I +
Sbjct: 360 TLIYQ 364
>gi|217977547|ref|YP_002361694.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
BL2]
gi|217502923|gb|ACK50332.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
BL2]
Length = 536
Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats.
Identities = 105/244 (43%), Positives = 154/244 (63%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
I + L+D +G V+ E++ PW PASLTKLMT YV +++ + L TP+
Sbjct: 38 IPLRAEAAPSLLMDLASGAVLYEDHATQPWFPASLTKLMTVYVALQAVRDHRISLDTPLV 97
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+S+ A+ PPS F+ G+ +TLD ALK+L+VKSAND++V +AE + + + F MN T
Sbjct: 98 VSRRAAAMPPSKMGFRPGTMVTLDTALKILMVKSANDVSVTVAEGVSGSVEAFAAEMNAT 157
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ LG+ +HF+N +G+ HY++ARD+A+L+ + FP++ F I LEI G+
Sbjct: 158 AAALGMQQSHFVNPNGLPDPQHYSSARDLALLARALYVTFPEHADLFSIGALEIGGRVMA 217
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N N +G + G DGMKTGFTCA+GFN+VASA QG + L+AVILGA + R +A+L
Sbjct: 218 NHNNLLGRYPGVDGMKTGFTCAAGFNVVASATQGGRKLVAVILGAPNVALRTVKAAALFD 277
Query: 262 MGFY 265
GF
Sbjct: 278 RGFA 281
>gi|168179469|ref|ZP_02614133.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum NCTC 2916]
gi|182669511|gb|EDT81487.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum NCTC 2916]
Length = 415
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 78/348 (22%), Positives = 142/348 (40%), Gaps = 25/348 (7%)
Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+ ++ ++ + S F +++A+ L+D+ TG +I PD P+
Sbjct: 1 MKLIFCKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS TK+MTA + + L +TI + S +G + + + L L+
Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ SAND A A+AE L + + F + MN +K LG + T+F+N G+ H T+ARD+AI
Sbjct: 116 LASANDCAEALAEYLSGSLENFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAI 175
Query: 173 LSWRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFT 221
+ + + + + N N + + G +G KTG+T
Sbjct: 176 IMNELVKQPEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYT 235
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
S + VAS + + +I ++ S L + GF N T
Sbjct: 236 VQSDHSYVASVNKNNHRIIVALVH-DKEKNFFDDSVKLFNYGFNNFTLDLLYPKDSYVTT 294
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
N + +VP + + K + + ++ + F+K ++
Sbjct: 295 YTNDNLKVPLYASKDFYYLKPKDDNMAPDLKLENTNLKNLKFKKGDVV 342
>gi|47095562|ref|ZP_00233170.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str.
1/2a F6854]
gi|47015992|gb|EAL06917.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str.
1/2a F6854]
Length = 433
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 77/367 (20%), Positives = 141/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + K +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 65 LEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN + L L F+NA G+ + + TAR
Sbjct: 125 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 185 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 244
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 245 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQ 304
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K K +++ +
Sbjct: 305 KAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNGNAPKLNTKVTMKEKTIEAPVK 363
Query: 325 KITLLKN 331
K T +
Sbjct: 364 KGTEVGK 370
>gi|167630369|ref|YP_001680868.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum
Ice1]
gi|167593109|gb|ABZ84857.1| d-alanyl-d-alanine carboxypeptidase [Heliobacterium modesticaldum
Ice1]
Length = 259
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 72/265 (27%), Positives = 121/265 (45%), Gaps = 12/265 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ +L S + L+D TG ++ E P PAS TK++TA +
Sbjct: 1 MCLSPFLLLGGPALCSASPQVTADAAVLMDAETGRILFERQAHQPRPPASTTKIVTALLG 60
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F L + IS+ A ++ G + L + L +V+S ND VAIAE
Sbjct: 61 FE-----FGDLEDEVIISQKAGSTGEASINLFPGERVALGDLLTGALVRSGNDACVAIAE 115
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+ +E+ F M S+ +G ++ F N +G+ H+++A D+A+++
Sbjct: 116 HIAGSEEFFTLWMTAKSRIIGGRSSQFFNTNGLPHKHHWSSAYDLAVVTREAMRRPEFAA 175
Query: 186 HYFQIKGLEIKGKKYP----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + +P NTN + ++ ADG+KTG T A+G +VASA + ++ LIA
Sbjct: 176 TVRSRRATLKNRQGWPKEIKNTNALLWSYPFADGVKTGTTRAAGACLVASATKNNRQLIA 235
Query: 242 VILGALDRNTRNKVSASLLSMGFYN 266
V+L + D R S L GF
Sbjct: 236 VVLHSDD---RFGDSLRLFEYGFNQ 257
>gi|217966043|ref|YP_002351721.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase)
(DD-carboxypeptidase) (CPase) (Penicillin-binding
protein5) (PBP-5) [Listeria monocytogenes HCC23]
gi|217335313|gb|ACK41107.1| D-alanyl-D-alanine carboxypeptidase DacA (DD-peptidase)
(DD-carboxypeptidase) (CPase) (Penicillin-binding
protein5) (PBP-5) [Listeria monocytogenes HCC23]
Length = 445
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 143/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 17 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 76
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 77 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN ++ L L F+N+ G+ + + TAR
Sbjct: 137 AISEKIAGSEKEFVDAMNKKAEELKLGEHQFVNSTGLNNEDLKGGQQVGGPKDENKMTAR 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 197 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRQGVDGLKTG 256
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 257 TTDYAGMCLTATAVQDGMRVITVVLHANGEAPGAHTSARFDETNKMLDYAFNNFKVKEVQ 316
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K + ++++ +
Sbjct: 317 KAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNDNSPKLNTNVKLEEKTIEAPVK 375
Query: 325 KITLLKN 331
K T +
Sbjct: 376 KGTEVGK 382
>gi|226225306|ref|YP_002759413.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Listeria monocytogenes Clip81459]
gi|225877768|emb|CAS06483.1| Putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
protein 5) [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|328468231|gb|EGF39237.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 1816]
Length = 445
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 141/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 17 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 76
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 77 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN + L L F+NA G+ + + TAR
Sbjct: 137 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 197 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 256
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 257 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQ 316
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K K +++ +
Sbjct: 317 KAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNGNEPKLNTKVTMKEKTIEAPVK 375
Query: 325 KITLLKN 331
K T +
Sbjct: 376 KGTEVGK 382
>gi|319404375|emb|CBI77978.1| penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498]
Length = 449
Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats.
Identities = 93/311 (29%), Positives = 153/311 (49%), Gaps = 5/311 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
++ + + + ++ + + E ++D NTG + + PASLTK+M
Sbjct: 13 KKVGIALTVLVIFCSWAIATPKEAYPDKYAAIVIDANTGKTLFQANATLKRYPASLTKMM 72
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y++F +K + TPI IS A+ PP+ K G T++++ A K LI KSAND+A
Sbjct: 73 TVYMIFEAIKNGRVTPNTPIPISNYAATRPPTKIGIKAGQTISIEAATKALITKSANDVA 132
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
AI E L +E+KF Q M ++ LG+ THF NA G+ +Y+TA+DMA L+ ++
Sbjct: 133 TAIGEYLGGSEQKFAQMMTIKARTLGMKNTHFANASGLPDTRNYSTAQDMATLALALRRH 192
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F+ +G+ N N + T G DG+KTG+T SG N+ S +S++
Sbjct: 193 FPEQYKLFKTTHFTFRGQTINNHNTLIKTIKGVDGIKTGYTQMSGSNLATSMRINGRSVV 252
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AV++G NTRN A+LL + + + + T+
Sbjct: 253 AVVMGGKSSNTRNIHMANLL----KQYLPKASRVESNEHLVATARYKLPTGAATPIPLTK 308
Query: 301 KEIINYNTQMK 311
+IN + ++
Sbjct: 309 NNLINSDDEIS 319
>gi|225867885|ref|YP_002743833.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp.
zooepidemicus]
gi|225701161|emb|CAW98054.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
subsp. zooepidemicus]
Length = 411
Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats.
Identities = 75/365 (20%), Positives = 146/365 (40%), Gaps = 31/365 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ +V +A M L+ + ++ TG ++ ASLTKL+
Sbjct: 1 MKKLIVTLAALMCLITNTSLAEDFSVNSRQAIAVEMTTGKILYAKEAQQKAPIASLTKLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V +K + + + +S+ A + P ++ + T+ ++ ++ SAN
Sbjct: 61 TVYLVLKEIKAGRLQWDSQVILSEYALQLATDPDISNPAFEQRPYTIKELVESSLIISAN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
AVA+AE + +E FV M + G+ +NA G+ +
Sbjct: 121 SSAVALAEHIAGSEPTFVDMMKKQLEAWGIRDYRLVNASGLNNSMLKGHLYPGSQPDDEN 180
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
TARD+A+++ ++ DFP+ + L+ K P++N + G DG+KTG
Sbjct: 181 QMTARDLALIAQQLLQDFPEVLTISSQAQLKWGEKALPSSNLLLAGREMGRAGVDGLKTG 240
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINY 275
T +G ++ +A+Q + +I+VIL A D R + LL F + K +
Sbjct: 241 TTSQAGQTMITTAVQDNMRIISVILHADQSDTDERARFVETNRLLDYCFDSYALEKLVAQ 300
Query: 276 IIKDFYQQNLSNEVP-----NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + S+ + + + + KDK + + + +
Sbjct: 301 NQVLPERLIVKQAAKQRLRVKASQTLTVVRPKDQTELSYSLRIKDK-ALKVPIRQNKKVG 359
Query: 331 NKITK 335
I +
Sbjct: 360 TLIYQ 364
>gi|46908941|ref|YP_015330.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
serotype 4b str. F2365]
gi|254930973|ref|ZP_05264332.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
HPB2262]
gi|46882214|gb|AAT05507.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
serotype 4b str. F2365]
gi|293582519|gb|EFF94551.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
HPB2262]
gi|328469102|gb|EGF40050.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 220]
gi|332313185|gb|EGJ26280.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str.
Scott A]
Length = 445
Score = 169 bits (427), Expect = 5e-40, Method: Composition-based stats.
Identities = 76/367 (20%), Positives = 141/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 17 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 76
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 77 LEAIDKGQIKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN + L L F+NA G+ + + TAR
Sbjct: 137 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 197 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 256
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 257 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQ 316
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K K +++ +
Sbjct: 317 KAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNGNEPKLNTKVTMKEKTIEAPVK 375
Query: 325 KITLLKN 331
K T +
Sbjct: 376 KGTEVGK 382
>gi|220903565|ref|YP_002478877.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219867864|gb|ACL48199.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 378
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 80/250 (32%), Positives = 128/250 (51%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P + + L D + ++ E D PASLTK+++ ++ + + K
Sbjct: 36 AAPPIPEHGFLETSSAILYDLDHDAILFEQNADQRIAPASLTKVLSMFLALDSVDQGKLS 95
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L +T+S+ A+ S ++ ++L+ L + V S ND ++A+AE + + FV
Sbjct: 96 LDNTVTVSRAAAGTGGSRMGLRENDVVSLEQLLMGMAVSSGNDASMAVAECVGGSTPAFV 155
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
MN ++ LG+ + F N HG+ G YTTARDM L+ PQ + + +
Sbjct: 156 AMMNAKAQALGMRDSQFRNPHGLPAKGQYTTARDMLTLARAYLQAHPQALRFHNTHTISH 215
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
KG+ N N +G + GADG+KTG+ ASG+N++ +A QG + L+AVILGA D TR
Sbjct: 216 KGRVTWNKNPLLGQYPGADGLKTGWVNASGYNLIFTASQGPRRLLAVILGAPDSRTRGVE 275
Query: 256 SASLLSMGFY 265
+ LL GF
Sbjct: 276 AFRLLDAGFQ 285
>gi|218513170|ref|ZP_03510010.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
[Rhizobium etli 8C-3]
Length = 325
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 1/253 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + + AE Y ++D TG+V+ D PASLTK+MT Y+ F
Sbjct: 1 MAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFE 60
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A A+ E L
Sbjct: 61 ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALGEML 120
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E +F Q M + LG++ T + NA+G+ TTARD A L ++ FPQY Y
Sbjct: 121 GGSEDRFAQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGY 180
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + + + + N VG+ G DG+KTG+T A+GFN+V+S +S+++V+LG
Sbjct: 181 FSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGT 240
Query: 248 DRNTRNKVSASLL 260
R+ +L+
Sbjct: 241 SGPARDAQMRNLI 253
>gi|209884896|ref|YP_002288753.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha
carboxidovorans OM5]
gi|209873092|gb|ACI92888.1| serine-type D-Ala-D-Ala carboxypeptidase [Oligotropha
carboxidovorans OM5]
Length = 587
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 81/279 (29%), Positives = 146/279 (52%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D N+G + D +PASLTK+MT Y++F ++ K L + + +S++AS
Sbjct: 55 ASIIVDANSGATLQSTNADATRHPASLTKIMTLYMLFEQIENGKLRLDSQLEVSRHASAQ 114
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
P+ + G T+ +++A+K ++ +SAND +V +AE++ +E+ F + M ++ LG++
Sbjct: 115 APTKLGLRPGQTIRVEDAIKGIVTRSANDASVVVAEAIAGSEEGFAKMMTRKARALGMNN 174
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T ++NA G+ TTARD A L I+ FP+Y YF +G+ N N +G
Sbjct: 175 TTYVNASGLPDSDQITTARDQATLGRAIQDRFPKYYRYFSTSVFTWRGRPIRNHNHLLGR 234
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
G DG+KTG+ ASGFN+V++ +G++ L+ V+LG R+ LL+ + +
Sbjct: 235 VEGVDGIKTGYIRASGFNLVSNIRRGNRHLVGVVLGGRTSGARDATMRKLLATYLDDAST 294
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R+ + I + ++ + + I T
Sbjct: 295 RRTVAAITERTPAGTTPAKMEQPVAAKPSPRPAPIQVAT 333
>gi|170755725|ref|YP_001782612.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum B1 str. Okra]
gi|169120937|gb|ACA44773.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum B1 str. Okra]
Length = 415
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 79/348 (22%), Positives = 137/348 (39%), Gaps = 25/348 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--------NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+ I ++L F ++A L+D+ TG +I PD P+
Sbjct: 1 MKLIFYKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS TK+MTA + + L +TI + S +G + + + L L+
Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ SAND A A+AE L + F + MN +K LG + T+F+N G+ H T+ARD+AI
Sbjct: 116 LASANDCAEALAEYLSGSLDNFPKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAI 175
Query: 173 LSWRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFT 221
+ + + + + N N + + G +G KTG+T
Sbjct: 176 IMNELVKQPEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYT 235
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
S + VAS + + +I ++ S L + GF N T
Sbjct: 236 VQSDHSYVASVNKNNHRIIVALVH-DKEKNFFDDSVKLFNYGFNNFTLDLLYPKDSYVTT 294
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
N + +VP + + K + + ++ + F+K ++
Sbjct: 295 YTNDNLKVPLYASKDFYYLKPKDDNMAPDLKLENTNLKNLKFKKGDVV 342
>gi|315646383|ref|ZP_07899501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
vortex V453]
gi|315278026|gb|EFU41346.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
vortex V453]
Length = 394
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 83/293 (28%), Positives = 129/293 (44%), Gaps = 13/293 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + + + ++ N L+D +G ++ D ASLTK+M
Sbjct: 14 MLIAVCCLLVTIAPVVYADHEKGPANHAQAAALIDVTSGRMLYSKNGDERLRIASLTKIM 73
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA V K L + ISKNA S+ K G MTL+N L L+++S ND A
Sbjct: 74 TAIVAIEHGK-----LDDRVKISKNAFAKEGSSIFLKLGEEMTLENLLFGLMLRSGNDAA 128
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
AIAE + TE+ FV MN + LG++ +HFMN HG+ HY++A DMA L+ +
Sbjct: 129 TAIAEHVGGTEEGFVMLMNEKAAQLGMTNSHFMNPHGLDHDEHYSSANDMAKLTAYALKN 188
Query: 181 FPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
K+ N N + + GADG+KTG+T + +V+SA +
Sbjct: 189 PVFSEIVKTPTKKAPNPNESWDYKWDNKNKMLRFYEGADGVKTGYTKKAFRCLVSSATRN 248
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
Q + AV L + +++L GF + +K K ++
Sbjct: 249 GQQIAAVTLNDGND---WNDHSNMLDYGFAHFPLKKVTEKGQKIQGYTLVTGS 298
>gi|49474302|ref|YP_032344.1| penicillin-binding protein [Bartonella quintana str. Toulouse]
gi|49239806|emb|CAF26196.1| Penicillin-binding protein [Bartonella quintana str. Toulouse]
Length = 450
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 93/312 (29%), Positives = 148/312 (47%), Gaps = 4/312 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ + I +A+ ++D NTG + + PASLTK+MT
Sbjct: 14 KVAIAFIVLALSCFCASATPQEVYPDKYAAIVIDANTGKTLFQANATLKRYPASLTKMMT 73
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
Y++F + ++ TPI +S+NA+ PP+ K G T++ A K LI +SAND+A
Sbjct: 74 LYMLFQAMHMRRVTPNTPIPVSRNAAARPPTKLGLKAGQTISAQEAAKALITRSANDVAT 133
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+AE L EKKF + M ++ LG++ THF NA G+ +Y+TARDMA LS ++ F
Sbjct: 134 AVAEYLGGNEKKFARMMTAKARKLGMTNTHFANASGLPDLRNYSTARDMATLSLALRKHF 193
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
PQ F+ K +G + N V T G DG+KTG+T SG N+ S +SL+A
Sbjct: 194 PQQYKLFKTKSFVFRGHTVKSHNKLVKTMKGVDGIKTGYTQMSGSNLATSMHIEGRSLVA 253
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301
V++G R++ A+LL + N + + T +
Sbjct: 254 VVMGGKSSTARDRHMANLL----SQYLPKANSMKNDGRLMASAHYNLPTGANIPIPTVKA 309
Query: 302 EIINYNTQMKEA 313
+ + + ++
Sbjct: 310 DPTDSDDEISTI 321
>gi|315644414|ref|ZP_07897547.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex
V453]
gi|315280164|gb|EFU43457.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus vortex
V453]
Length = 472
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 78/344 (22%), Positives = 137/344 (39%), Gaps = 36/344 (10%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ L++ +TG V+ D PAS+TK+MT Y+V +K+ + +++ +N
Sbjct: 79 LDVSSAVLIEPSTGQVLLSVNADEALPPASMTKMMTEYIVAEKVKQGELAWDEMVSVKEN 138
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A + S +G T++ + V SAND VA+AE + +E++FV MN+T+K +
Sbjct: 139 AEKTVGSRIFLAEGDQHTVEELYIAMAVGSANDATVALAEHVAGSEEEFVTLMNDTAKKM 198
Query: 146 GLSATHFMNAHGVV------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
GL F+N+ G+ +A D A+L+ I D P + + I+
Sbjct: 199 GLKTAFFINSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKFIVEDHPDFARFTAIQSH 258
Query: 194 EIKG---KKYPNTNWA-----------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + N NW + G DG+KTG T A+ + +A + L
Sbjct: 259 KFRPRDTHPIINYNWMLEANKDITNFKKYAYEGLDGLKTGHTNAAKYCFAGTAERDGMRL 318
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKK---------INYIIKDFYQQNLSNEVP 290
I+V++G R S +L GF N ++ + I + + V
Sbjct: 319 ISVVMGTKSEGARFVESKKVLDYGFDNFEVKEVQAAGATVEGFDSIEVKKGKGKQTAVVT 378
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + + N + D S K T +
Sbjct: 379 DKAVTFVVPKGSTGK-NITFEAKLDSSSMTAPVAKGTKVGTVTY 421
>gi|114704888|ref|ZP_01437796.1| hypothetical protein FP2506_08126 [Fulvimarina pelagi HTCC2506]
gi|114539673|gb|EAU42793.1| hypothetical protein FP2506_08126 [Fulvimarina pelagi HTCC2506]
Length = 482
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 87/242 (35%), Positives = 135/242 (55%), Gaps = 1/242 (0%)
Query: 20 LSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + Y ++D N G V+ E+ D PASLTK+MT Y+ F L +K+ LT
Sbjct: 24 MPMQANANAKYAGFVIDANNGKVLYEDRADEYRYPASLTKMMTLYLTFDALSKKRISLTD 83
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S+ A+ PP+ G T+ ++ A+ L+ KSAND +V +AE L +E F + M
Sbjct: 84 KMPVSRYAAGRPPTKIGVPAGKTLQVEEAIYSLVTKSANDASVTLAEYLAGSESSFAEMM 143
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
T+ LG++ T + NA+G+ G TTARD A L ++ FPQY YF + +G+
Sbjct: 144 TRTAHKLGMTKTTYKNANGLPDSGQRTTARDQAKLGIALREHFPQYYKYFSTRSYSFRGR 203
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ N N +G G DG+KTG+ ASGFN+V+S + +SL+AV++G +R+
Sbjct: 204 RLGNHNRVLGRMTGVDGIKTGYINASGFNLVSSIKRDGKSLVAVVMGGRSGRSRDNHMVD 263
Query: 259 LL 260
LL
Sbjct: 264 LL 265
>gi|299135167|ref|ZP_07028358.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
gi|298590144|gb|EFI50348.1| Serine-type D-Ala-D-Ala carboxypeptidase [Afipia sp. 1NLS2]
Length = 597
Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats.
Identities = 85/265 (32%), Positives = 140/265 (52%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D N+G + D +PASLTK+MT Y++F L K L + + +S++AS
Sbjct: 56 ASIVVDANSGATLQSTNADALRHPASLTKIMTLYMLFEQLDSGKLRLDSQLEVSRHASVQ 115
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
P+ + G T+ +++A+K ++ +SAND AV +AE++ +E+ F + M ++ LG+S
Sbjct: 116 APTKLGLRPGQTIRVEDAIKGIVTRSANDAAVVVAEAIGGSEENFCKMMTRKARALGMSK 175
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T ++NA G+ TTARD A L I+ FP Y YF +G N N +G
Sbjct: 176 TTYVNASGLPDDDQITTARDQATLGRAIQDRFPTYYRYFSTSVFTWRGSPIRNHNHLLGQ 235
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
G DG+KTG+ ASGFN+V + +G++ L+ V+LG +R+ LL+
Sbjct: 236 MDGVDGIKTGYVRASGFNLVTNIRRGNRHLVGVVLGGRSGGSRDATMRRLLAEHLDEGAT 295
Query: 270 RKKINYIIKDFYQQNLSNEVPNISE 294
R+ + I + + S+E P
Sbjct: 296 RRTVAAITERNPSRMASDEEPAAKA 320
>gi|291522275|emb|CBK80568.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
Length = 430
Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats.
Identities = 88/327 (26%), Positives = 144/327 (44%), Gaps = 14/327 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
A T L++ TG VI E D +PAS+TK+MT +++ L K LT +
Sbjct: 65 SAVTVISEAAVLMEAGTGTVIYEKNQDVRVSPASITKIMTLLLIYDALYNGKIQLTDEVV 124
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
S A S ++G T++ +K +++ S ND +VA+AE + +E+ FV MN
Sbjct: 125 TSARAKSMGGSQVFLEEGEKQTVETLIKCIVIASGNDASVAMAEYVSGSEEAFVGEMNQK 184
Query: 142 SKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199
+ +LG++ THF++ G+ + HYTTA+D+AI++ + T++P Y I I
Sbjct: 185 AADLGMNGTHFVDCCGLTDSNDHYTTAKDVAIMARALITNYPDISQYATIWMENITHVTA 244
Query: 200 -------YPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
NTN + G+KTG T +G+ +A++ SLIAV++ A D
Sbjct: 245 KGSSEFGLSNTNKLLKMANNFEVTGLKTGSTAKAGYCFCGTAVKDGLSLIAVVMDAPDYK 304
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R + LL+ GF N + + + + + + N
Sbjct: 305 IRFSEAQQLLNYGFANCSAYRDDHPPVLLPMAIKDGKTESVELMYDGQFSYVALRGENLE 364
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + ES F FE T I
Sbjct: 365 NIHSKLQLDESLFPPFEAGTKAGRLIY 391
>gi|294676801|ref|YP_003577416.1| D-alanyl-D-alanine carboxypeptidase [Rhodobacter capsulatus SB
1003]
gi|294475621|gb|ADE85009.1| D-alanyl-D-alanine carboxypeptidase-2 [Rhodobacter capsulatus SB
1003]
Length = 386
Score = 169 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 73/318 (22%), Positives = 117/318 (36%), Gaps = 9/318 (2%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + D T V+ E D PAS++KLMT ++F L E + L T +S
Sbjct: 23 FDTRARTAWVYDLTTQTVLLEKDADVAVPPASMSKLMTLNMLFEALSEGRVTLDTTFAVS 82
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
A + S + ++ ++ +++ S ND V +AE L +E F M +K
Sbjct: 83 TKAKQMGGSTMFLNEMDRPSVRELMQGVVINSGNDACVVVAEGLAGSEGAFAAGMTERAK 142
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---KY 200
LG++ + F NA G + D+ IL+ R+ T FPQY F K +
Sbjct: 143 MLGMTRSTFANASGWPHPDQRMSMHDLGILAVRLITQFPQYYPLFSETQFNYKNRAPANA 202
Query: 201 PNTN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
N N ADG+KTG T +G+ +V SA+ GD+ ++ VI G R +
Sbjct: 203 HNRNPLLKIPAADWHADGLKTGHTEEAGYGLVGSAVMGDRRIVFVISGLASEADRASEAE 262
Query: 258 SLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
++ + F + + V + EA
Sbjct: 263 AVANWAFRQFVMKTVAQKGTRLAEAPVWLGTEASVGLVPASDVAMLIPAGAAEGVKAEAV 322
Query: 315 DKESHFIDFEKITLLKNK 332
T L
Sbjct: 323 FDGPVTAPVTAGTELGRL 340
>gi|254673307|emb|CBA08444.1| putative penicillin-binding protein precursor [Neisseria
meningitidis alpha275]
Length = 389
Score = 169 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 79/352 (22%), Positives = 141/352 (40%), Gaps = 24/352 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY--------------TLLDTNTGHVIAENYP 47
+ V++++ + + S A + ++D + ++
Sbjct: 5 KILPVLLSIILGVSHATAASPAPNKPAVHAAPTFQTPETLTAAHIVIDLQSRQTLSAKNI 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P PA+LT+LMTAY+VF +K + I ++A S + G T++ D
Sbjct: 65 NTPVEPAALTQLMTAYLVFKNMKSGNIQSEENLKIPESAWASEGSRMFVRPGDTVSTDKL 124
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
LK +I SAND A+ +A + + FVQ MN ++ LG+ T F N G+ + G +T
Sbjct: 125 LKGMIALSANDAALTLAGRLGNGSIENFVQQMNKEARRLGMKNTVFKNPTGLSREGQVST 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A+D+A LS + DFP+Y F IK + K + N N + +G+K G T + G+
Sbjct: 185 AKDLAQLSEALMRDFPEYYPLFSIKSFKFKNIEQNNRNILLYRDNNVNGLKAGHTESGGY 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
N+ S + ++ + LG+ TR ++ LL+ K Q
Sbjct: 245 NLAVSYSGNGRHILVITLGSESAETRASDNSKLLNRALQAFDTPKIYPKGKTVAQIQISG 304
Query: 287 NEVPNIS------EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + KE ++ + +K +L
Sbjct: 305 GSKKTVRAGFLKEAYITLPHKEAKMAEQILET---IQPIPAPVKKGQILGKI 353
>gi|13470857|ref|NP_102426.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
gi|14021600|dbj|BAB48212.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
Length = 485
Score = 169 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 92/321 (28%), Positives = 151/321 (47%), Gaps = 17/321 (5%)
Query: 1 MRQFLV------------IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD 48
MR+ L+ ++ A+ + P ++D TG V+ +
Sbjct: 1 MRKALLGIVSKSTSPLKAMMVFALAMTFVCADVASSLAARPAAIVVDAKTGKVLYSADAN 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
PASLTK+MT Y+ F + + K TP+ S AS P+ K G +++++ A+
Sbjct: 61 GRRYPASLTKMMTLYLTFEAMAKGKISRNTPVVFSAKASAEAPTKLGVKPGGSVSVETAI 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
++ KSAND A A+ E L E F + M ++ LG++ T F NA+G+ G +TTAR
Sbjct: 121 LSIVTKSANDSATALGEMLGGDETTFARMMTAKARALGMNGTVFRNANGLPDPGQFTTAR 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
DMA L ++ FPQY YF + ++ N +G G DG+KTG+T ASGFN+
Sbjct: 181 DMATLGIALREHFPQYYGYFSQRSFLYGRQRINGHNRLLGRIKGVDGIKTGYTRASGFNL 240
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
V+S G++ L+AV++G +R+ ASL+ N + D + S+
Sbjct: 241 VSSVSDGNRRLVAVVMGGTSGGSRDNQMASLI-----NTYMPRASTRGGGDLVAKADSSN 295
Query: 289 VPNISEEVCTTQKEIINYNTQ 309
+V + + + +
Sbjct: 296 PVKALAKVLLPKHDAPTPDDK 316
>gi|322388019|ref|ZP_08061626.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus infantis
ATCC 700779]
gi|321141292|gb|EFX36790.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus infantis
ATCC 700779]
Length = 413
Score = 169 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 73/367 (19%), Positives = 147/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL +I + + + + ++ N+G ++ E P AS++KL
Sbjct: 1 MKKLFLTLITLISFGSATTVFAQDFDVAAKHAIAVEANSGKILYEKDATQPVEIASISKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L++ K L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 LTVYLVYEALEQGKITLSTPVEISDYPYQLTTNSEASNVPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKVAGSEKDFVDMMKAKLLEWGIQDATLVNTTGLNNETLGNNIYPGSKKDDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+A+++ + +PQ + + G +TN + G DG+KT
Sbjct: 181 NKMSAYDVAVVARNLILKYPQVLEITKKPSSTFAGMTIHSTNSMLDGMPAYRGGIDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A +++T R +++LL N + +
Sbjct: 241 GNTDKAGASFVGTTVEKGMRIITVVLNADNQDTNPYARFTATSALLDYISSNFALQTIVK 300
Query: 275 YI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
Y E++ Q+ + + D H E T+
Sbjct: 301 QGESYQDSKSPVYDGKQDTVTAVAKEDIKIVQRLGSRAESTVTYTPDATEHVAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|154248459|ref|YP_001419417.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
autotrophicus Py2]
gi|154162544|gb|ABS69760.1| Serine-type D-Ala-D-Ala carboxypeptidase [Xanthobacter
autotrophicus Py2]
Length = 663
Score = 169 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 87/233 (37%), Positives = 135/233 (57%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D NTG V+ E+ PD +PAS+TK+MT Y++F L+ L + + +S A+
Sbjct: 74 SSAIIVDANTGKVLYEDNPDALRHPASVTKIMTLYLLFEQLEAGNLKLDSDLQVSAKAAS 133
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
PS K GS + +++A+K L+ +SAND+AV IAE+L +E +F + M ++ LG+S
Sbjct: 134 QQPSKLGVKPGSAIEVEDAIKALVTRSANDVAVVIAENLGGSESEFAEMMTRKARALGMS 193
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
T F NA G+ TTARD++IL I+ FP+ YF + +G+ N N +G
Sbjct: 194 RTVFRNASGLPNPNQVTTARDLSILGRAIQDRFPKQYKYFATRTFYYRGQAIGNHNRLLG 253
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
G DG+KTG+T ASGFN+V S + + L+ V+LG R+ +L+S
Sbjct: 254 RVEGVDGIKTGYTQASGFNLVTSVKRDGRFLVGVVLGGSSAGARDARMTNLIS 306
>gi|293400812|ref|ZP_06644957.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305838|gb|EFE47082.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 378
Score = 169 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 81/319 (25%), Positives = 134/319 (42%), Gaps = 11/319 (3%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
L++ +G VI PAS+TK+M ++F L + K +T S A
Sbjct: 26 NAKSAYLMEYTSGKVIYAKNEKAKLYPASMTKMMGLLLIFESLHDGKLDWKDEVTTSAYA 85
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ S ++ TM++ + +K + + SAND VA+AE + + + FV+ MN +K L
Sbjct: 86 ASMGGSQVFLEENETMSVKDMIKSICIASANDAMVAMAEKVGGSAEHFVEMMNEKAKKLN 145
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------HYFQIKGLEIKGKKY 200
L THFMN G+ HYT A+DMAI+ + + + + I+ K
Sbjct: 146 LCNTHFMNPTGLHDPQHYTCAKDMAIVGKALIKEGGDDLLKITSTYDAYIREDSEKAFWL 205
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN + + G DG+K+GFT + I +A + D LIAV++G RN +L
Sbjct: 206 VNTNKLLKQYPGVDGLKSGFTSQAMSCITITAKKKDLRLIAVVMGEPSSKVRNGEIKQML 265
Query: 261 SMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
GF K +++ ++ KE +
Sbjct: 266 DYGFSQYQQGLLYAAGTKMKTIPIENGKPQKVDVLTDKDLVYVFEKGSEPKETAKEISLR 325
Query: 317 ESHFIDFEKITLLKNKITK 335
++H F+K ++ K
Sbjct: 326 KTH-APFKKGEIIGKVQIK 343
>gi|85858430|ref|YP_460632.1| D-alanyl-D-alanine serine-type carboxypeptidase [Syntrophus
aciditrophicus SB]
gi|85721521|gb|ABC76464.1| D-alanyl-D-alanine serine-type carboxypeptidase [Syntrophus
aciditrophicus SB]
Length = 310
Score = 169 bits (426), Expect = 7e-40, Method: Composition-based stats.
Identities = 76/297 (25%), Positives = 131/297 (44%), Gaps = 32/297 (10%)
Query: 1 MRQFLVIIAMAMLSNIF---------PFLSIAETNKL----------------------- 28
M++ ++ ++ + K
Sbjct: 1 MKKLAILFSILLTVFFIQPSELMARKAPKKKTPEVKAAVGKSVSKKRVARKSPRNTAPEI 60
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L+D V+ E D P PASLTK+++ Y+ + + + + + +S+ A +
Sbjct: 61 KSSILMDMTDRRVLYEQNADQPIQPASLTKVLSLYLTYEAMAQGRVRWLDSVVVSQAARQ 120
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S + G + L+ +K + V SAND +VA+AE + +FV+ MN + LG++
Sbjct: 121 ADGSRMYIEAGERVPLETLIKGMTVISANDASVAVAEHVAGNVDRFVERMNRKAGELGMT 180
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+ F +G+ G YTTARDM IL+ FP + ++ K N N +
Sbjct: 181 HSVFRTPNGLPAEGQYTTARDMMILADAYLRRFPGSLALHSMQYYTYKKITQHNCNALLK 240
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ DG+K+GF ASG+N++A+A +G+ LIAV++GA R + + LL GF
Sbjct: 241 KYPDVDGLKSGFVRASGYNLIATARRGNTRLIAVVMGARTPEIRVRETRRLLDAGFQ 297
>gi|317126753|ref|YP_004093035.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
cellulosilyticus DSM 2522]
gi|315471701|gb|ADU28304.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
cellulosilyticus DSM 2522]
Length = 479
Score = 169 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 73/407 (17%), Positives = 147/407 (36%), Gaps = 75/407 (18%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ ++L+ + + E++ L L+D +TG ++ D P PAS+ K+M+ Y
Sbjct: 12 LIIFTFTSLLTGVTTTKADYESDLLETGILVDADTGKILYGRNIDQPLPPASMVKMMSIY 71
Query: 64 VVFSFLKEKKAMLTTPITISKN-----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
++ +++ + I+ + + SN +K T+ + + + SAN
Sbjct: 72 LIHESIEKGDISWDDIVYINDYLVNDLSKQINLSNVPLRKDEDYTVRELYESIAIYSANA 131
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSA------------------------THFMN 154
+A+AE + +E FV+ MN K LG+ F+N
Sbjct: 132 SMMAVAEHIAGSEGSFVEMMNEKGKELGMGNLLREEGEKHGISNLNEIAEANLGDFQFVN 191
Query: 155 AHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199
+ G+ ++ +AR A L++ + D+P+ + I + K
Sbjct: 192 STGLPNSVLLENRPSGTEIDDDNFMSARATATLAYHLLNDYPEVLETASIPEMTFKEGTE 251
Query: 200 ----YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL---- 247
PN N + ADG+KTG T A+G +A++ + LI V++G
Sbjct: 252 DAIVMPNWNKMLEGRGHFYEYADGLKTGTTTAAGACFTGTAVKNGRRLITVVMGLPRPLT 311
Query: 248 ----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
D R + L+ GF N + + + + + +T +
Sbjct: 312 SRPEDDLARYDETRKLMEYGFNNFSRVELYPENMTIEGFEEIPVVKGKEDVVSISTTDAV 371
Query: 304 INYNTQMKEAKDKES---------------HFIDFEKITLLKNKITK 335
+ + E + S E T++ + +
Sbjct: 372 SAFVHRNDEESYQYSVVFNEDDELFDSEGRLIAPIEANTVIGQLVVE 418
>gi|114707363|ref|ZP_01440260.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
gi|114537244|gb|EAU40371.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
Length = 299
Score = 169 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 84/277 (30%), Positives = 135/277 (48%), Gaps = 17/277 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
R +++ ML+ AE + ++D TG + E
Sbjct: 16 RLLAAFLSLGMLAGCQSSQLTAEGLMPASQPVAPIAFSQIERRGHSALVVDFGTGRTLYE 75
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
+ D PASLTK+MT Y++F ++ + T +S+NA+ PPS K G ++ +
Sbjct: 76 DQADELRYPASLTKMMTLYLLFEAVENGQLSRETQFIVSENAASKPPSKLGLKPGESIPV 135
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
A+ L VKSAND+A +AE++ TE+ F M +++LG++ T F NA G+
Sbjct: 136 SLAMTALAVKSANDVATVVAENMAGTEEAFAAVMTRKARSLGMNHTQFANASGLPNPQQV 195
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
++ARDMAIL I + +P Y F + G+ Y +TN +G G DGMKTG+ +
Sbjct: 196 SSARDMAILGRAIMSRYPSYAQLFATPSYQYNGRTYNSTNKLLGKVAGVDGMKTGYINDA 255
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
G ++VA+ + + LI V+LG R+ L+
Sbjct: 256 GSHLVATVRRNGRRLIVVVLGGDSSRKRDAEVTELIE 292
>gi|209549453|ref|YP_002281370.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209535209|gb|ACI55144.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 517
Score = 169 bits (426), Expect = 8e-40, Method: Composition-based stats.
Identities = 83/261 (31%), Positives = 137/261 (52%), Gaps = 3/261 (1%)
Query: 3 QFLVIIAMAMLSNIF-PFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ + I+++A+ + + AE Y ++D TG+V+ D PASLTK+M
Sbjct: 19 KLMAILSVALTVVLVDSVSAEAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKMM 78
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A
Sbjct: 79 TIYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAA 138
Query: 121 VAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ E L + F Q M + LG++ T + NA+G+ TTARD A L ++
Sbjct: 139 TALGEMLGGGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQ 198
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
FPQY YF + + + + N VG+ G DG+KTG+T A+GFN+V+S +S+
Sbjct: 199 HFPQYYGYFSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSI 258
Query: 240 IAVILGALDRNTRNKVSASLL 260
+ V+LG R+ +L+
Sbjct: 259 VGVVLGGASTPARDAQMRNLI 279
>gi|319407837|emb|CBI81490.1| penicillin-binding protein [Bartonella sp. 1-1C]
Length = 360
Score = 169 bits (426), Expect = 9e-40, Method: Composition-based stats.
Identities = 120/335 (35%), Positives = 193/335 (57%), Gaps = 13/335 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M Q + + + +I L++A + +DT TG ++ N W PASLTKLM
Sbjct: 1 MHQLFHTLFFSFILSIISSLTLAHP-----FISVDTTTGRILKHNQAFERWYPASLTKLM 55
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
Y++F + K ITISKNA++ P +S +K GS +TLD ALK+ +VKS ND+A
Sbjct: 56 MTYIIFRAMSTGKISPYKHITISKNAAQAPAIHSGYKAGSVLTLDTALKITLVKSTNDLA 115
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+AI+E++ +++ FV+ MN ++ LG+ T+F N G+ +Y+TARDMA+L+ +I+ +
Sbjct: 116 IAISEAISGSQEAFVKQMNAEARRLGMFGTNFTNTSGLPNPNNYSTARDMALLAVQIRRE 175
Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF I ++ K N N +G F G DGMKTGF CASGFN+VASA + ++
Sbjct: 176 FPQYTHYFSIPAIDFGNGKKIQSNLNNLIGRFDGIDGMKTGFICASGFNLVASATRNKRT 235
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+I VILG+ N R + +A LL GF +K + ++ + + +++ ++ +++CT
Sbjct: 236 IIVVILGSESINKREEKAAQLLDAGFLDKGSPQLTLATLEPYGTKI--SQITDMKQQICT 293
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ + N+ +E + + IT L + I
Sbjct: 294 PEAIKMRLNSYDEEGNIILTSPL----ITALPSSI 324
>gi|217976936|ref|YP_002361083.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
BL2]
gi|217502312|gb|ACK49721.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocella silvestris
BL2]
Length = 614
Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats.
Identities = 80/232 (34%), Positives = 135/232 (58%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D N+G + D P +PAS+TK+MT Y++F L++ + L + I IS A+
Sbjct: 81 AAIVVDGNSGEALYARNEDEPRHPASITKVMTLYLLFEQLEQGRLRLDSEIPISARAAAQ 140
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
P+ + G T+++D+A+K ++ +SANDIAVAIAE++ E +F M ++ LG+
Sbjct: 141 KPTKLGLRPGRTISVDDAIKAIVTRSANDIAVAIAEAVGGDEDRFADLMTRKARELGMRN 200
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T ++NA G+ TTARD++IL ++ FP+Y YF + G N N +
Sbjct: 201 TKYVNASGLPADAQITTARDLSILGRAVQERFPRYYRYFSTRTFYFAGAAIRNHNRLMDR 260
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
G DG+KTG+T ASGFN++ S + ++AV++G + +R+++ A L+
Sbjct: 261 VEGMDGIKTGYTNASGFNLLTSVKRDGHYIVAVVMGGVSAPSRDRIMADLIE 312
>gi|332097261|gb|EGJ02244.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella boydii 3594-74]
Length = 268
Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats.
Identities = 86/252 (34%), Positives = 130/252 (51%), Gaps = 7/252 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A S K G +++ + K +I++S ND
Sbjct: 77 GQALKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKDVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDRN 250
LI+V+LGA
Sbjct: 257 LISVVLGAKTDR 268
>gi|59800884|ref|YP_207596.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae FA 1090]
gi|240016201|ref|ZP_04722741.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae FA6140]
gi|240080345|ref|ZP_04724888.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae FA19]
gi|240112554|ref|ZP_04727044.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae MS11]
gi|240117582|ref|ZP_04731644.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae PID1]
gi|240123137|ref|ZP_04736093.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae PID332]
gi|254493357|ref|ZP_05106528.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 1291]
gi|268596491|ref|ZP_06130658.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae FA19]
gi|268598622|ref|ZP_06132789.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae MS11]
gi|268603285|ref|ZP_06137452.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID1]
gi|268681765|ref|ZP_06148627.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID332]
gi|59717779|gb|AAW89184.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae FA 1090]
gi|226512397|gb|EEH61742.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 1291]
gi|268550279|gb|EEZ45298.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae FA19]
gi|268582753|gb|EEZ47429.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae MS11]
gi|268587416|gb|EEZ52092.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID1]
gi|268622049|gb|EEZ54449.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID332]
Length = 389
Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats.
Identities = 77/324 (23%), Positives = 136/324 (41%), Gaps = 11/324 (3%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P L ET + ++D + ++ + P PA+LT+LMTAY+VF +K
Sbjct: 34 AAPTLQTPETLTA-AHIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSGNIQ 92
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKF 134
+ I ++A S + G T++ D LK +I AND A+ +A+ + + F
Sbjct: 93 SEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSIENF 152
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
VQ MN ++ LG+ T F N G+ + G +TA+D+++LS + DFP+Y F IK +
Sbjct: 153 VQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLSLLSEALMRDFPEYYPLFSIKSFK 212
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ + N N + +G+K G T + G+N+ S + ++ + LG+ TR
Sbjct: 213 FENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRAS 272
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEIINYNT 308
++ LL+ K Q + + KE
Sbjct: 273 DNSKLLNRALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKMAEQ 332
Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 333 ILET---IQPIPAPVKKGQILGKI 353
>gi|62289915|ref|YP_221708.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
9-941]
gi|82699842|ref|YP_414416.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar
Abortus 2308]
gi|189024158|ref|YP_001934926.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
S19]
gi|237815417|ref|ZP_04594415.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
gi|254697357|ref|ZP_05159185.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Brucella
abortus bv. 2 str. 86/8/59]
gi|260545336|ref|ZP_05821077.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
gi|260761773|ref|ZP_05874116.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
str. 86/8/59]
gi|62196047|gb|AAX74347.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
9-941]
gi|82615943|emb|CAJ10966.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
melitensis biovar Abortus 2308]
gi|189019730|gb|ACD72452.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
S19]
gi|237790254|gb|EEP64464.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
gi|260096743|gb|EEW80618.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
gi|260672205|gb|EEX59026.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
str. 86/8/59]
Length = 396
Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats.
Identities = 91/337 (27%), Positives = 144/337 (42%), Gaps = 11/337 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A+ + + K P L+D +G V+ D P PASL KLMTA
Sbjct: 15 LLGTVFAAVPPAWAAPANSSIVTKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAE 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAND 118
VVF L++ + L T +S+ A S + ST T+ + L+ +IV+SAND
Sbjct: 75 VVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSAND 134
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A+ +AE L +E+ F MN +K LGLS++ F+N+ G+ G T D+ L+ I
Sbjct: 135 GAIVLAEGLAGSEQTFTGAMNQRAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIH 194
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P+Y Y++ N N + +GADGM TGFT ASG+ +V SA Q +
Sbjct: 195 AAHPEYYRYYEQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE------VPNI 292
L + G R + + L+ G D + K Q + V
Sbjct: 255 LFLAMSGLASVKEREEEARKLIQWGMTGFDDMRIFAANDKVGDAQVFGGQSSTLPLVVKK 314
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
E+ ++ ++ ++ ++ L
Sbjct: 315 DVELLLPKEAREKLKARIIYEGPLQAPIAAGTEVGRL 351
>gi|170760236|ref|YP_001788291.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A3 str. Loch Maree]
gi|169407225|gb|ACA55636.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A3 str. Loch Maree]
Length = 415
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 80/348 (22%), Positives = 138/348 (39%), Gaps = 25/348 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--------NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+ I ++L F ++A L+D+ TG +I PD P+
Sbjct: 1 MKLIFYKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS TK+MTA + + L +TI + S +G + + + L L+
Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ SAND A A+AE L + F + MN +K LG + T+F+N G+ + H T+ARD+AI
Sbjct: 116 LASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNNKHRTSARDLAI 175
Query: 173 LSWRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFT 221
+ + + + + N N + + G +G KTG+T
Sbjct: 176 IMNELVKQPEYSKIATTLSYNIPPTNKSREKRPLWNENKLIQKHSNFYYKGCEGGKTGYT 235
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
S + VAS + + +I ++ S L + GF N T
Sbjct: 236 VQSDHSYVASVNKDNHRIIVALVH-DKEKNFFDDSVKLFNYGFNNFTLDLLYPKDSYVTT 294
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
N + +VP + E K + + ++ + F+K ++
Sbjct: 295 YTNDNLKVPLYASEDFYYLKPKDDNMAPNLKLENTNLKNLKFKKGDVV 342
>gi|148559355|ref|YP_001258933.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
gi|148370612|gb|ABQ60591.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
Length = 396
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 91/343 (26%), Positives = 148/343 (43%), Gaps = 11/343 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A+ + + K P L+D +G V+ D P PASL KLMTA
Sbjct: 15 LLGTVFAAVPPAWAAPANSSIVTKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAE 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAND 118
VVF L++ + L T +S+ A S + ST T+ + L+ +IV+SAND
Sbjct: 75 VVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSAND 134
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A+ +AE L +E+ F MN +K LGLS++ F+N+ G+ G T D+ L+ I
Sbjct: 135 GAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIH 194
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P+Y Y++ N N + +GADGM TGFT ASG+ +V SA Q +
Sbjct: 195 AAHPEYYRYYEQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE------VPNI 292
L + G R + + L+ G D + K Q + V
Sbjct: 255 LFLAMSGLASVKEREEEARKLIQWGMTGFDDMRIFAANDKVGDAQVFGGQSSTLPLVVKK 314
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E+ ++ ++ ++ ++ L+ ++ +
Sbjct: 315 DVELLLPKEAREKLKARIIYEGPLQAPIAAGTEVGRLQFELNR 357
>gi|266618868|ref|ZP_06111806.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
gi|263528518|gb|EEZ28341.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
Length = 415
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 79/348 (22%), Positives = 138/348 (39%), Gaps = 25/348 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--------NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+ I ++L F ++A L+D+ TG +I PD P+
Sbjct: 1 MKLIFYKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS TK+MTA + + L +TI + S +G + + + L L+
Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ SAND A A+AE L + F + MN +K LG + T+F+N G+ + H T+ARD+AI
Sbjct: 116 LASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNNKHRTSARDLAI 175
Query: 173 LSWRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFT 221
+ + + + + N N + + G +G KTG+T
Sbjct: 176 IMNELVKQPEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYT 235
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
S + VAS + + +I ++ S L + GF N T
Sbjct: 236 VQSDHSYVASVNKNNHRIIVALVH-DKEKNFFDDSVKLFNYGFNNFTLDLLYPKDSYVTT 294
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
N + +VP + + K + + ++ + F+K ++
Sbjct: 295 YTNDNLKVPLYASKDFYYLKPKDDNMAPDLKLENTNLKNLKFKKGDVV 342
>gi|327189245|gb|EGE56423.1| putative serine-type D-Ala-D-Ala carboxypeptidase protein
[Rhizobium etli CNPAF512]
Length = 493
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 82/253 (32%), Positives = 133/253 (52%), Gaps = 1/253 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + + AE Y ++D TG+V+ D PASLTK+MT Y+ F
Sbjct: 1 MAVTVVLVDSVNAEAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMTFE 60
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A A+ E L
Sbjct: 61 ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAATALGEML 120
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E +F Q M + LG++ T + NA+G+ TTARD A L ++ FPQY Y
Sbjct: 121 GGSEDRFGQMMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGY 180
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + + + + N VG+ G DG+KTG+T A+GFN+V+S +S+++V+LG
Sbjct: 181 FSTRAFKFGTRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGT 240
Query: 248 DRNTRNKVSASLL 260
R+ +L+
Sbjct: 241 SGPARDAQMRNLI 253
>gi|256061084|ref|ZP_05451239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
gi|261325086|ref|ZP_05964283.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
gi|261301066|gb|EEY04563.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
Length = 396
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 91/337 (27%), Positives = 144/337 (42%), Gaps = 11/337 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A+ + + K P L+D +G V+ D P PASL KLMTA
Sbjct: 15 LLGTVFAAVPPAWAAPANSSIVTKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAE 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAND 118
VVF L++ + L T +S+ A S + ST T+ + L+ +IV+SAND
Sbjct: 75 VVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSAND 134
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A+ +AE L +E+ F MN +K LGLS++ F+N+ G+ G T D+ L+ I
Sbjct: 135 GAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIH 194
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P+Y Y++ N N + +GADGM TGFT ASG+ +V SA Q +
Sbjct: 195 AAHPEYYRYYEQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE------VPNI 292
L + G R + + L+ G D + K Q + V
Sbjct: 255 LFLAMSGLASVKEREEEARKLIQWGMTGFDDMRIFAANDKVGDAQVFGGQSSTLPLVVKK 314
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
E+ ++ ++ ++ ++ L
Sbjct: 315 DVELLLPKEAREKLKARIIYEGPLQAPIAAGTEVGRL 351
>gi|322376423|ref|ZP_08050916.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M334]
gi|321282230|gb|EFX59237.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M334]
Length = 413
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 69/367 (18%), Positives = 147/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++ ++ ++++ + + + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIILTLLTLSVIGSASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYRLTTNSEASNVPMEARNYTVEQLLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAHRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+++ ++ + ++ D ++ E T+
Sbjct: 301 KGDAYQDSKVPVQDGKEDTVTAVAKDDISLVERVGNQSSKSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|330814086|ref|YP_004358325.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487181|gb|AEA81586.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Pelagibacter sp.
IMCC9063]
Length = 379
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 74/345 (21%), Positives = 144/345 (41%), Gaps = 12/345 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ +++ L I + + A L+D N+G V+ + + +PAS+TK+M
Sbjct: 1 MKKITILLISFFL--IQAYNANALITSAKQAILMDVNSGQVLFKKNENEKISPASITKVM 58
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T+ + F +K + L +S A S+ +T+ N LK +I+ S N
Sbjct: 59 TSIIAFDLIKSGELKLNEKFLVSNKAWRMAKQGYSSMFIVPNDRITVLNLLKGIIIASGN 118
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D +A+AE + +E F MN+ +K++G++ T+F N+ G+ +Y+T D++++S +
Sbjct: 119 DACIALAEGIAGSEAAFASMMNDKAKSIGMTNTNFSNSSGIYSEDNYSTVSDISLMSVYL 178
Query: 178 KTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+FP+ + + N N + DG+KTG SG+++ A+
Sbjct: 179 IKEFPELYKMYAERTFTWDRTGGNPITQSNRNTLLYKNSKVDGIKTGHLNDSGYSLAATM 238
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT--DRKKINYIIKDFYQQNLSNEVP 290
+ ++ +++V+ G + R K S LL+ KK N + + +
Sbjct: 239 LVNNRRILSVVSGTNSQKERAKESLKLLNHAIITTELLLVKKENPLFSINTWNGKKSSIK 298
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E+ + E F+ L K
Sbjct: 299 LELEKDLYITYSKRRSRDIKMYLEVSEPIKDHFKASDQLGVLRIK 343
>gi|226950403|ref|YP_002805494.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A2 str. Kyoto]
gi|226841760|gb|ACO84426.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A2 str. Kyoto]
Length = 415
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 79/348 (22%), Positives = 136/348 (39%), Gaps = 25/348 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--------NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+ I ++L F ++A L+D+ TG +I PD P+
Sbjct: 1 MKLIFYKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS TK+MTA + + L +TI + S +G + + + L L+
Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ SAND A A+AE L + F + MN +K LG T+F+N G+ H T+ARD+AI
Sbjct: 116 LASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCINTNFVNPSGLYNDKHRTSARDLAI 175
Query: 173 LSWRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFT 221
+ + + + + N N + + G +G KTG+T
Sbjct: 176 IMNELVKQPEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYT 235
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
S + VAS + + +I ++ S L + GF N T
Sbjct: 236 VQSDHSYVASVNKNNHRIIVALVH-DKEKNFFDDSVKLFNYGFNNFTLDLLYPKDSYVTT 294
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
N + +VP + + K + + ++ + F+K ++
Sbjct: 295 YTNDNLKVPLYASKDFYYLKPKDDNMAPDLKLENTNLKNLKFKKGDVV 342
>gi|17987273|ref|NP_539907.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
16M]
gi|23501872|ref|NP_697999.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
gi|161618945|ref|YP_001592832.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
23365]
gi|163843260|ref|YP_001627664.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
gi|225627469|ref|ZP_03785506.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
gi|225852496|ref|YP_002732729.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
23457]
gi|254689222|ref|ZP_05152476.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
str. 870]
gi|254693707|ref|ZP_05155535.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
str. Tulya]
gi|254701743|ref|ZP_05163571.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
513]
gi|254704285|ref|ZP_05166113.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
686]
gi|254706813|ref|ZP_05168641.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M163/99/10]
gi|254710077|ref|ZP_05171888.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
B2/94]
gi|254730255|ref|ZP_05188833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
str. 292]
gi|256031573|ref|ZP_05445187.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M292/94/1]
gi|256044652|ref|ZP_05447556.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
str. Rev.1]
gi|256113538|ref|ZP_05454364.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
str. Ether]
gi|256257472|ref|ZP_05463008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
str. C68]
gi|256264013|ref|ZP_05466545.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
str. 63/9]
gi|256369413|ref|YP_003106921.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
gi|260168704|ref|ZP_05755515.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. F5/99]
gi|260563998|ref|ZP_05834484.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
16M]
gi|260566468|ref|ZP_05836938.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
gi|260754727|ref|ZP_05867075.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
str. 870]
gi|260757950|ref|ZP_05870298.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
str. 292]
gi|260883748|ref|ZP_05895362.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
str. C68]
gi|261213979|ref|ZP_05928260.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
str. Tulya]
gi|261314280|ref|ZP_05953477.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M163/99/10]
gi|261317626|ref|ZP_05956823.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
B2/94]
gi|261752296|ref|ZP_05996005.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
513]
gi|261754953|ref|ZP_05998662.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
686]
gi|261758181|ref|ZP_06001890.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
gi|265988661|ref|ZP_06101218.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M292/94/1]
gi|265991076|ref|ZP_06103633.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
str. Rev.1]
gi|265994911|ref|ZP_06107468.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
str. Ether]
gi|297248317|ref|ZP_06932035.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Brucella abortus bv. 5 str. B3196]
gi|17982950|gb|AAL52171.1| d-alanyl-d-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
16M]
gi|23347810|gb|AAN29914.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
gi|161335756|gb|ABX62061.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
23365]
gi|163673983|gb|ABY38094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
gi|225617474|gb|EEH14519.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
gi|225640861|gb|ACO00775.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
23457]
gi|255999573|gb|ACU47972.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
gi|260154014|gb|EEW89106.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
16M]
gi|260155986|gb|EEW91066.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
gi|260668268|gb|EEX55208.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
str. 292]
gi|260674835|gb|EEX61656.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
str. 870]
gi|260873276|gb|EEX80345.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
str. C68]
gi|260915586|gb|EEX82447.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
str. Tulya]
gi|261296849|gb|EEY00346.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
B2/94]
gi|261303306|gb|EEY06803.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M163/99/10]
gi|261738165|gb|EEY26161.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
gi|261742049|gb|EEY29975.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
513]
gi|261744706|gb|EEY32632.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
686]
gi|262766024|gb|EEZ11813.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
str. Ether]
gi|263001860|gb|EEZ14435.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
str. Rev.1]
gi|263094156|gb|EEZ18078.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
str. 63/9]
gi|264660858|gb|EEZ31119.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M292/94/1]
gi|297175486|gb|EFH34833.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Brucella abortus bv. 5 str. B3196]
gi|326409012|gb|ADZ66077.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28]
gi|326538722|gb|ADZ86937.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis
M5-90]
Length = 396
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 91/337 (27%), Positives = 144/337 (42%), Gaps = 11/337 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A+ + + K P L+D +G V+ D P PASL KLMTA
Sbjct: 15 LLGTVFAAVPPAWAAPANSSIVTKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAE 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAND 118
VVF L++ + L T +S+ A S + ST T+ + L+ +IV+SAND
Sbjct: 75 VVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSAND 134
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A+ +AE L +E+ F MN +K LGLS++ F+N+ G+ G T D+ L+ I
Sbjct: 135 GAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIH 194
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P+Y Y++ N N + +GADGM TGFT ASG+ +V SA Q +
Sbjct: 195 AAHPEYYRYYEQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE------VPNI 292
L + G R + + L+ G D + K Q + V
Sbjct: 255 LFLAMSGLASVKEREEEARKLIQWGMTGFDDMRIFAANDKVGDAQVFGGQSSTLPLVVKK 314
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
E+ ++ ++ ++ ++ L
Sbjct: 315 DVELLLPKEAREKLKARIIYEGPLQAPIAAGTEVGRL 351
>gi|115525408|ref|YP_782319.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisA53]
gi|115519355|gb|ABJ07339.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisA53]
Length = 584
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 89/241 (36%), Positives = 137/241 (56%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ + ++D NTG ++ N PD PASLTK+MT Y++F L+ K L +
Sbjct: 45 VATESYSPAFASIIVDGNTGATLSANNPDALRRPASLTKIMTLYLLFERLEAGKLSLDSE 104
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ +S++AS P+ + G T+ +++A+K L+ +SAND AV IAE++ E F + M
Sbjct: 105 MDVSEHASIQAPTKLGLRPGQTLRVEDAIKALVTRSANDAAVVIAEAIGGDEDDFAKLMT 164
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ LG++ T + NA G+ TTARD A L I+ FP+Y YF KG
Sbjct: 165 KKARALGMTRTVYRNASGLPNDDQITTARDQATLGRAIQERFPRYYRYFATSVFVYKGHA 224
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N +G+ G DG+KTG+T ASGFN+V+S +G++ LI V+LG +R+ SL
Sbjct: 225 IRNHNRLLGSVEGVDGIKTGYTRASGFNLVSSMRRGNRHLIGVVLGGRSGGSRDAAMRSL 284
Query: 260 L 260
L
Sbjct: 285 L 285
>gi|322807302|emb|CBZ04876.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum H04402
065]
Length = 415
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 79/348 (22%), Positives = 137/348 (39%), Gaps = 25/348 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--------NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+ I ++L F ++A L+D+ TG +I PD P+
Sbjct: 1 MKLIFYKILCSVLLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS TK+MTA + + L +TI + S +G + + + L L+
Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ SAND A A+AE L + F + MN +K LG + T+F+N G+ H T+ARD+AI
Sbjct: 116 LASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAI 175
Query: 173 LSWRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFT 221
+ + + + + N N + + G +G KTG+T
Sbjct: 176 IMNELVKQPEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYT 235
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
S + VAS + + +I ++ S L + GF N T
Sbjct: 236 VQSDHSYVASVNKNNHRIIVALVH-DKEKNFFDDSVKLFNYGFNNFTLDLLYPKDSYVTT 294
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
N + +VP + + K + + ++ + F+K ++
Sbjct: 295 YTNDNLKVPLYASKDFYYLKPKDDNMAPDLKLENTNLKNLKFKKGDVV 342
>gi|91977526|ref|YP_570185.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisB5]
gi|91683982|gb|ABE40284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisB5]
Length = 578
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 90/277 (32%), Positives = 153/277 (55%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
++D NTG + PD +PASLTK+MT Y++F L++ K L + + +S++A
Sbjct: 54 PAFASIIVDANTGATLTATNPDALRHPASLTKIMTLYMLFERLEQGKLQLDSEMEVSEHA 113
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
S P+ + G ++ +++A+K L+ +SAND AV IAE++ +E F + M ++ LG
Sbjct: 114 SSQAPTKLGLRPGQSLRVEDAIKGLVTRSANDAAVVIAETVGGSETDFAKMMTRKARALG 173
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+S T + NA G+ TTARD +IL I+ FP+Y YF +G N N
Sbjct: 174 MSRTVYRNASGLPNDDQVTTARDQSILGRAIQDRFPRYYRYFATASFNYRGNSIRNHNRL 233
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+G G DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+
Sbjct: 234 LGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEK 293
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
++R+ + I++ Q ++ + + + T Q +
Sbjct: 294 ASNRRTVAAIVERSPSQIDTDVASDDTRQAPTVQVQG 330
>gi|239998641|ref|ZP_04718565.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae 35/02]
gi|240013763|ref|ZP_04720676.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae DGI18]
gi|240115295|ref|ZP_04729357.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae PID18]
gi|240120831|ref|ZP_04733793.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae PID24-1]
gi|240125386|ref|ZP_04738272.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae SK-92-679]
gi|240127841|ref|ZP_04740502.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae SK-93-1035]
gi|260440888|ref|ZP_05794704.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae DGI2]
gi|268594495|ref|ZP_06128662.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 35/02]
gi|268600975|ref|ZP_06135142.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID18]
gi|268683987|ref|ZP_06150849.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae
SK-92-679]
gi|268686238|ref|ZP_06153100.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae
SK-93-1035]
gi|268547884|gb|EEZ43302.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae 35/02]
gi|268585106|gb|EEZ49782.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae PID18]
gi|268624271|gb|EEZ56671.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae
SK-92-679]
gi|268626522|gb|EEZ58922.1| D-alanyl-D-alanine carboxypeptidase [Neisseria gonorrhoeae
SK-93-1035]
Length = 389
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 78/324 (24%), Positives = 136/324 (41%), Gaps = 11/324 (3%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P L ET + ++D + ++ + P PA+LT+LMTAY+VF +K
Sbjct: 34 AAPTLQTPETLTA-AHIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSGNIQ 92
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKF 134
+ I ++A S + G T++ D LK +I AND A+ +A+ + + F
Sbjct: 93 SEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSIENF 152
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
VQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F IK +
Sbjct: 153 VQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFK 212
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ + N N + +G+K G T + G+N+ S + ++ + LG+ TR
Sbjct: 213 FENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRAS 272
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEIINYNT 308
++ LL+ K Q + + KE
Sbjct: 273 DNSKLLNRALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKMAEQ 332
Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 333 ILET---IQPIPAPVKKGQILGKI 353
>gi|148380930|ref|YP_001255471.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A str. ATCC 3502]
gi|153933353|ref|YP_001385299.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A str. ATCC 19397]
gi|153936108|ref|YP_001388707.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A str. Hall]
gi|148290414|emb|CAL84541.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
ATCC 3502]
gi|152929397|gb|ABS34897.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A str. ATCC 19397]
gi|152932022|gb|ABS37521.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A str. Hall]
Length = 415
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 79/348 (22%), Positives = 137/348 (39%), Gaps = 25/348 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--------NKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+ I ++L F ++A L+D+ TG +I PD P+
Sbjct: 1 MKLIFYKILCSILLFSLFFSNVALAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS TK+MTA + + L +TI + S +G + + + L L+
Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ SAND A A+AE L + F + MN +K LG + T+F+N G+ H T+ARD+AI
Sbjct: 116 LASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAI 175
Query: 173 LSWRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFT 221
+ + + + + N N + + G +G KTG+T
Sbjct: 176 IMNELVKQPEYSKIATTLSYNILPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYT 235
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
S + VAS + + +I ++ S L + GF N T
Sbjct: 236 VQSDHSYVASVNKNNHRIIVALVH-DKEKNFFDDSVKLFNYGFNNFTLDLLYPKDSYVTT 294
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
N + +VP + + K + + ++ + F+K ++
Sbjct: 295 YTNDNLKVPLYASKDFYYLKPKDDNMAPDLKLENTNLKNLKFKKGDVV 342
>gi|327190645|gb|EGE57733.1| putative D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
etli CNPAF512]
Length = 290
Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats.
Identities = 85/261 (32%), Positives = 135/261 (51%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + L + + A+ ++D +G V+ + D PASLTK+M
Sbjct: 1 MTKMTSRLRATALWSALLISAFAQAEAGQASFVVDVRSGQVLEASNQDDLNYPASLTKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L + + +T+S+NA P G +TL A++ ++V SAND A
Sbjct: 61 TLYLAFEALHQGRLTWEQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE L +E+ F + M + + LG+ T F N G+ TTARDMA L + D
Sbjct: 121 VAIAEQLGGSEQAFARAMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRD 180
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F ++G + +G K N + + G DG+KTG+T ASG+N+V SA++G + ++
Sbjct: 181 FPEEFKLFSMRGFQFRGMKLRGHNNLMYRYDGVDGIKTGYTDASGYNVVTSALKGGRRVV 240
Query: 241 AVILGALDRNTRNKVSASLLS 261
V++G + R+ A LL
Sbjct: 241 GVVMGEKTASIRDDKMAGLLD 261
>gi|306840479|ref|ZP_07473238.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2]
gi|306289494|gb|EFM60712.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO2]
Length = 396
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 88/315 (27%), Positives = 133/315 (42%), Gaps = 8/315 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+
Sbjct: 37 TKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEY 96
Query: 86 ASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
A S + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN
Sbjct: 97 AWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQ 156
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y+
Sbjct: 157 RAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQ 216
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+
Sbjct: 217 RNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276
Query: 261 SMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
G D + K S+ +P + ++ +
Sbjct: 277 QWGMTGFDDMRIFAANDKVGDAQVFGGKSSTLPLVVKKDVELLLPKEAREKLKARIIYEG 336
Query: 318 SHFIDFEKITLLKNK 332
T +
Sbjct: 337 PLQAPIAAGTEVGRL 351
>gi|301794006|emb|CBW36404.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
pneumoniae INV104]
gi|332204876|gb|EGJ18941.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
GA47901]
Length = 413
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 150/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+TAY+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITAYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK F+ M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFIDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|306843866|ref|ZP_07476461.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1]
gi|306275621|gb|EFM57345.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. BO1]
Length = 396
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 90/337 (26%), Positives = 139/337 (41%), Gaps = 8/337 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A+ + + K P L+D +G V+ D P PASL KLMTA
Sbjct: 15 LLGTVFAAVPPAWAAPANSSIVTKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAE 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAND 118
VVF L++ + L T +S+ A S + ST T+ + L+ +IV+SAND
Sbjct: 75 VVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSAND 134
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A+ +AE L +E+ F MN +K LGLS++ F+N+ G+ G T D+ L+ I
Sbjct: 135 GAIVLAEGLAGSEQTFAVAMNQRAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIH 194
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P+Y Y+ N N + +GADGM TGFT ASG+ +V SA Q +
Sbjct: 195 AAHPEYYRYYAQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEE 295
L + G R + + L+ G D + K S+ +P + ++
Sbjct: 255 LFLAMSGLASVKEREEEARKLIQWGMTGFDDMRIFAANDKVGDAQVFGGKSSTLPLVVKK 314
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T +
Sbjct: 315 DVELLLPKEAREKLKARIIYEGPLQAPIAAGTEVGRL 351
>gi|90419583|ref|ZP_01227493.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
SI85-9A1]
gi|90336520|gb|EAS50261.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
SI85-9A1]
Length = 500
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 88/268 (32%), Positives = 139/268 (51%), Gaps = 1/268 (0%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+F ++A+ + + E N ++D N G V+ + D PASLTK+MT
Sbjct: 25 RFAGVVAIG-AGMLLSAVGHVEANDKYAGFVIDANNGQVLYNDRADEYRYPASLTKMMTL 83
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y+ F LK + ++ + +S A+ PPS K GST+T++ A+ L+ KSAND AV
Sbjct: 84 YMTFDALKSGRISMSDKMPVSAYAAARPPSKIGLKAGSTLTVEEAVYSLVTKSANDAAVV 143
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ E +E F M ++ +G+ T F NA+G+ TTARDMA L ++ FP
Sbjct: 144 LGEFQAGSESAFAARMTAKARQIGMPKTTFRNANGLPDSEQKTTARDMATLGIALREHFP 203
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+Y F + +G++ N N +G G DG+KTG+ ASGFN+V S + +SL+AV
Sbjct: 204 EYYKIFSTRSYSFRGRRLGNHNRVLGRVKGVDGIKTGYINASGFNLVTSIERDGKSLVAV 263
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDR 270
++G +R+ LL+ + R
Sbjct: 264 VMGGRSGRSRDDHMVELLTRYLPKASTR 291
>gi|114705410|ref|ZP_01438318.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
gi|114540195|gb|EAU43315.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
Length = 467
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 94/289 (32%), Positives = 158/289 (54%), Gaps = 3/289 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D TG V++++ PAS TKLMTAY+ ++ TP+ +++ A+
Sbjct: 66 ASIVVDLETGKVLSQSNATERRYPASTTKLMTAYLAMKAVEVGSMDWDTPVVMTRQAANE 125
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLS 148
PS GS M LD A++ L+VKSAND+A A+ ++ + + FV MN T+ +G+
Sbjct: 126 APSKLDIPPGSIMRLDEAVRALLVKSANDVATAVGQTLGHGSSETFVAMMNRTAGLIGMR 185
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
T F+NAHG+ G +++A+D+AIL+ I+ +FP+Y +F + + GK N N +G
Sbjct: 186 DTQFINAHGLPGEGQHSSAKDLAILAMAIREEFPEYKDWFGTEAIVFNGKLMNNGNKLLG 245
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ GA+GMKTG+ CA GFN+V++ + +++LIAV+LGA R +SA L F
Sbjct: 246 RYDGAEGMKTGYICAGGFNLVSAVTRDNRTLIAVVLGANGTIERETLSAELYETAFK--A 303
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
D +K+ ++S +C+ + N ++ + +DK
Sbjct: 304 DLDANYKTVKELPIVGDGKVTLDVSNYICSGEGRTARANDRVADRRDKS 352
>gi|38142311|dbj|BAD00958.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142319|dbj|BAD00962.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|332202728|gb|EGJ16797.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
GA41317]
Length = 413
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 75/367 (20%), Positives = 150/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+TAY+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITAYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKKDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|38142345|dbj|BAD00975.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
Length = 413
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 73/367 (19%), Positives = 147/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L + + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 LTVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNVPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDRMRAKLLEWGIKDATVVNTTGLNNETLGDNIYPGSNKDDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFDGITITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKTIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|332716423|ref|YP_004443889.1| penicillin-binding protein [Agrobacterium sp. H13-3]
gi|325063108|gb|ADY66798.1| penicillin-binding protein [Agrobacterium sp. H13-3]
Length = 372
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 124/310 (40%), Positives = 181/310 (58%), Gaps = 3/310 (0%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++ A+ ++ A ++D TG VI+ W PASLTKLMTAY+ FS
Sbjct: 14 LSAAIAIMTAGLVAAAPVANANPKMVVDVKTGKVISHQEAFRKWYPASLTKLMTAYIAFS 73
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+K K T + +SK A++ P S FK G +T+D+ALKLL++KSANDIAVAIAE++
Sbjct: 74 QMKAGKLSPQTEVVMSKKAADQPASKMYFKPGQKLTMDSALKLLLIKSANDIAVAIAETI 133
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
T FV MN ++ LG+S+T ++NA+G+ G YTTARD+A+L+ IK +FP+Y HY
Sbjct: 134 GGTSDNFVAQMNAQAQRLGMSSTRYINANGLPGKGQYTTARDLALLALIIKREFPEYAHY 193
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F ++G+ K Y N N VG F GADGMKTGF CASGFN V+SA++ +S+I V+LGA
Sbjct: 194 FSLEGVTTGKKDYANFNMLVGRFDGADGMKTGFICASGFNQVSSAVRNGRSVITVVLGAD 253
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
R SA LL MG + + + + + EV ++S E+C + +
Sbjct: 254 SLAGRTDQSADLLQMGLTAPSGQGVSLASLAPY---GDTAEVNDVSAEICNPKAAKVRSE 310
Query: 308 TQMKEAKDKE 317
++ + +
Sbjct: 311 SRDETGRMVI 320
>gi|16804791|ref|NP_466276.1| hypothetical protein lmo2754 [Listeria monocytogenes EGD-e]
gi|224502838|ref|ZP_03671145.1| hypothetical protein LmonFR_09994 [Listeria monocytogenes FSL
R2-561]
gi|16412254|emb|CAD00967.1| lmo2754 [Listeria monocytogenes EGD-e]
Length = 445
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 77/367 (20%), Positives = 141/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 17 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 76
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + K +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 77 LEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN + L L F+NA G+ + + TAR
Sbjct: 137 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 197 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 256
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 257 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQ 316
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K K +++ +
Sbjct: 317 KAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNGNAPKLNTKVTMKEKTIEAPVK 375
Query: 325 KITLLKN 331
K T +
Sbjct: 376 KGTEVGK 382
>gi|114569833|ref|YP_756513.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10]
gi|114340295|gb|ABI65575.1| Serine-type D-Ala-D-Ala carboxypeptidase [Maricaulis maris MCS10]
Length = 450
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 100/267 (37%), Positives = 144/267 (53%), Gaps = 1/267 (0%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L+I++ ++ + A N +++ NTG V+ + PASLTK+MT Y+
Sbjct: 15 LLILSCSLALLGLSTPAHA-NNSRYAAFVVEENTGVVLHSRRSEAERFPASLTKMMTLYM 73
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+F L+ + L PI IS NA+ PS GST++ +NA++ L+VKSAND+AVA+
Sbjct: 74 LFDALEAGEIGLNDPIRISANAANASPSRLGLAPGSTISAENAIRALVVKSANDVAVAVG 133
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E L E +F + M + +GL+ T F NA G+ TTARDMA L+ + DFPQY
Sbjct: 134 ERLGGGESRFGELMTARAAEIGLTNTTFRNASGLPNSRQTTTARDMARLAIALHRDFPQY 193
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
YF + G+ Y N N VG G DG+KTG+ ASGFN+V SA + D LI VI+
Sbjct: 194 FDYFNEETFRYNGRTYRNHNSLVGRVRGVDGLKTGYIRASGFNVVVSAERDDHRLITVIM 253
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRK 271
G R+ + L+ F R+
Sbjct: 254 GGPSAAARDAHAEELIEAAFATLEQRQ 280
>gi|241204780|ref|YP_002975876.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240858670|gb|ACS56337.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 517
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 84/261 (32%), Positives = 138/261 (52%), Gaps = 3/261 (1%)
Query: 3 QFLVIIAMAM-LSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ L I+++A+ + + + AE Y ++D TG+V+ D PASLTK+M
Sbjct: 19 RLLAILSVAVTIVMVDSVNTDAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKMM 78
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A
Sbjct: 79 TLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAA 138
Query: 121 VAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ E L + F Q M + LG++ T + NA+G+ TTARD A L ++
Sbjct: 139 TALGEMLGGGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQ 198
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
FPQY YF + + + + N VG+ G DG+KTG+T A+GFN+V+S +S+
Sbjct: 199 HFPQYYGYFSTRAFKFGSRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSI 258
Query: 240 IAVILGALDRNTRNKVSASLL 260
+ V+LG R+ +L+
Sbjct: 259 VGVVLGGASTPARDAQMRNLI 279
>gi|254827320|ref|ZP_05232007.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
N3-165]
gi|254830810|ref|ZP_05235465.1| hypothetical protein Lmon1_05599 [Listeria monocytogenes 10403S]
gi|254899789|ref|ZP_05259713.1| hypothetical protein LmonJ_08246 [Listeria monocytogenes J0161]
gi|254913006|ref|ZP_05263018.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes J2818]
gi|254937387|ref|ZP_05269084.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes F6900]
gi|284800360|ref|YP_003412225.1| hypothetical protein LM5578_0105 [Listeria monocytogenes 08-5578]
gi|284993545|ref|YP_003415313.1| hypothetical protein LM5923_0105 [Listeria monocytogenes 08-5923]
gi|258599701|gb|EEW13026.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
N3-165]
gi|258609993|gb|EEW22601.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes F6900]
gi|284055922|gb|ADB66863.1| hypothetical protein LM5578_0105 [Listeria monocytogenes 08-5578]
gi|284059012|gb|ADB69951.1| hypothetical protein LM5923_0105 [Listeria monocytogenes 08-5923]
gi|293591008|gb|EFF99342.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes J2818]
Length = 445
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 77/367 (20%), Positives = 141/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 17 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 76
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + K +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 77 LEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN + L L F+NA G+ + + TAR
Sbjct: 137 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 197 GMAKLAKHLINDYPDVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 256
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 257 TTDYAGMCLTATAVQDGMRVITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQ 316
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V + ++ K K +++ +
Sbjct: 317 KAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNGNAPKLNTKVTMKEKTIEAPVK 375
Query: 325 KITLLKN 331
K T +
Sbjct: 376 KGTEVGK 382
>gi|222086064|ref|YP_002544596.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Agrobacterium
radiobacter K84]
gi|221723512|gb|ACM26668.1| serine-type D-Ala-D-Ala carboxypeptidase protein [Agrobacterium
radiobacter K84]
Length = 504
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 84/320 (26%), Positives = 152/320 (47%), Gaps = 1/320 (0%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ L +A++ + + Y ++D NTG+V+ D PASLTK+MT
Sbjct: 26 KMLFGLAVSTATITMTVDASYAAGGSKYAGIVIDANTGNVLYSENADTLHYPASLTKMMT 85
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
Y+ F L+ + L TP+ SKNA+ P+ G ++T+ A+ ++ KSAND A+
Sbjct: 86 VYLTFEALESGRITLDTPVVFSKNAAMQAPTKLGIGTGRSVTVREAILGIVTKSANDAAM 145
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+ E L +E F + MN+ ++ LG++ T + N +G+ TTARD A L ++ F
Sbjct: 146 ALGEMLGGSEDNFARMMNDKARMLGMTRTTYRNPNGLPNTAQMTTARDQARLGIALREHF 205
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
PQY F + + P N +G+ G DG+KTG+T A+G+N+ S +S++
Sbjct: 206 PQYYGLFSTTSFRLGNRVIPGHNHLLGSVRGVDGIKTGYTRAAGYNLATSVKVDGRSIVG 265
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301
V+LG R+ L++ + + + +I + + + + + K
Sbjct: 266 VVLGGASTPARDNQMRKLIATYLPVASTKHISSNVIAQTVAETPNIQAASARMAAAGSVK 325
Query: 302 EIINYNTQMKEAKDKESHFI 321
+ ++++ + S
Sbjct: 326 ASKVESAEVEDDQQPSSAAA 345
>gi|253577333|ref|ZP_04854650.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251843233|gb|EES71264.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 469
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 74/344 (21%), Positives = 140/344 (40%), Gaps = 35/344 (10%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
++ LL+ +G ++ + P PAS+TK+MT Y+V +K+ K +T+ +N
Sbjct: 75 LEVSAAILLEPVSGQILLNVNGEQPLPPASMTKMMTEYIVAELVKQGKFSWDDVVTVGRN 134
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A++ S +G T++ + + SAND VA+AE + +E+ FV+ MN+ +K +
Sbjct: 135 AAQTIGSRIFLAEGDQHTVEELYTAMAIASANDATVALAEYVAGSEQAFVKMMNDEAKRM 194
Query: 146 GLSATHFMNAHGVVQHGH------------YTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
G+ HF N+ G+ +A D AIL+ I TD P + + I+
Sbjct: 195 GMKTAHFANSTGLDIADMPAEFRPTDGKETVMSALDAAILAKYIVTDHPDFTRFTTIQSK 254
Query: 194 EIKGK---KYPNTNWA-----------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N NW + G DG+KTG T +G +A++ L
Sbjct: 255 KFRDRDTAPMVNLNWMLEANKNVTNFKQFAYEGLDGLKTGHTSNAGNCFTGTAVRNGMRL 314
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---------IIKDFYQQNLSNEVP 290
I+V++G R + +L GF N ++ + + + V
Sbjct: 315 ISVVMGTASDKARFVETRKVLDYGFNNFETKQIVPPKTTVTGTETVTVKKAKNTEVPVVT 374
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + + + D+ + ++ T +
Sbjct: 375 DQAVSFVVPKGADTSAVEAKVTLADESNLTAPLKQGTKVGTVTY 418
>gi|116252287|ref|YP_768125.1| penicillin-binding protein/D-alanyl-D-alanine carboxypeptidase
[Rhizobium leguminosarum bv. viciae 3841]
gi|115256935|emb|CAK08029.1| putative penicillin-binding protein/D-alanyl-D-alanine
carboxypeptidase [Rhizobium leguminosarum bv. viciae
3841]
Length = 523
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 89/324 (27%), Positives = 150/324 (46%), Gaps = 7/324 (2%)
Query: 3 QFLVIIAMAM-LSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ L I+++A+ + + + AE Y ++D TG+V+ D PASLTK+M
Sbjct: 26 RLLAILSVAVTIVMVDSVNADAEAANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMM 85
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND A
Sbjct: 86 TLYMTFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAA 145
Query: 121 VAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ E L + F Q M + LG++ T + NA+G+ TTARD A L ++
Sbjct: 146 TALGEMLGGGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQ 205
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
FPQY YF + + + + N VG+ G DG+KTG+T A+GFN+V+S +S+
Sbjct: 206 HFPQYYGYFSTRAFKFGSRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSI 265
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
+ V++G R+ +L++ + R + +I P
Sbjct: 266 VGVVMGGASTPARDAQMRNLIASYLPKASSRGGSSALIAQAAPAPAMIVTPAP----VQP 321
Query: 300 QKEIINYNTQMKEAKDKESHFIDF 323
+K T + D
Sbjct: 322 KKAQQMAKTITAAQPPISAAAADL 345
>gi|293399410|ref|ZP_06643563.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Neisseria gonorrhoeae F62]
gi|291609979|gb|EFF39101.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Neisseria gonorrhoeae F62]
Length = 441
Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats.
Identities = 78/324 (24%), Positives = 136/324 (41%), Gaps = 11/324 (3%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P L ET + ++D + ++ + P PA+LT+LMTAY+VF +K
Sbjct: 86 AAPTLQTPETLTA-AHIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSGNIQ 144
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKF 134
+ I ++A S + G T++ D LK +I AND A+ +A+ + + F
Sbjct: 145 SEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSIENF 204
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
VQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F IK +
Sbjct: 205 VQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFK 264
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ + N N + +G+K G T + G+N+ S + ++ + LG+ TR
Sbjct: 265 FENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESTETRAS 324
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEIINYNT 308
++ LL+ K Q + + KE
Sbjct: 325 DNSKLLNRALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKMAEQ 384
Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 385 ILET---IQPIPAPVKKGQILGKI 405
>gi|228994104|ref|ZP_04154004.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
12442]
gi|228765556|gb|EEM14210.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
12442]
Length = 425
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 89/374 (23%), Positives = 146/374 (39%), Gaps = 39/374 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET-----NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR+ L I+ + +LS ++ + + L D +TG ++ E PD AS
Sbjct: 3 MRKILSILLVFLLSFSSLGVTTSHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAIAS 62
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KL+ Y V +KE K T + IS A E +N L +K L
Sbjct: 63 MSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGLQYTVKELYHSI 122
Query: 116 ANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
A + +L + +EK F+ N +K LGL F+NA G+
Sbjct: 123 VIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 182
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA----VG 208
+ +ARDM ILS I T +P+ + + + K + N NW
Sbjct: 183 DPNGENSLSARDMGILSRTIITKYPEILEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 242
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G DG+KTG + +G+ SA +GD LI+VI+ + R S L+ GF N
Sbjct: 243 AYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNNFE 302
Query: 269 DRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE---SHFI 321
+K K N I +++ P V + + +Y + K
Sbjct: 303 KQKLKIDKNNTISVVKGKEDTVTVTPEKEITVISKKGSKPSYKVSTEADKSLAEDGKLVA 362
Query: 322 DFEKITLLKNKITK 335
+K + + + +
Sbjct: 363 PIKKDAKVGSLVLE 376
>gi|194098190|ref|YP_002001238.1| Penicillin-binding protein [Neisseria gonorrhoeae NCCP11945]
gi|291044211|ref|ZP_06569920.1| penicillin-binding protein [Neisseria gonorrhoeae DGI2]
gi|193933480|gb|ACF29304.1| Penicillin-binding protein [Neisseria gonorrhoeae NCCP11945]
gi|291011105|gb|EFE03101.1| penicillin-binding protein [Neisseria gonorrhoeae DGI2]
gi|317163912|gb|ADV07453.1| putative D-alanyl-D-alanine carboxypeptidase / penicillin binding
protein [Neisseria gonorrhoeae TCDC-NG08107]
Length = 441
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 78/324 (24%), Positives = 136/324 (41%), Gaps = 11/324 (3%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P L ET + ++D + ++ + P PA+LT+LMTAY+VF +K
Sbjct: 86 AAPTLQTPETLTA-AHIVIDLQSRQTLSAKNTNTPVEPAALTQLMTAYLVFKNMKSGNIQ 144
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKF 134
+ I ++A S + G T++ D LK +I AND A+ +A+ + + F
Sbjct: 145 SEENLKIPESAWASEGSRMFVRPGDTVSTDKLLKGMIALCANDAALTLADRLGNGSIENF 204
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
VQ MN ++ LG+ T F N G+ + G +TA+D+A+LS + DFP+Y F IK +
Sbjct: 205 VQQMNKEARRLGMKNTVFKNPTGLGREGQVSTAKDLALLSEALMRDFPEYYPLFSIKSFK 264
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ + N N + +G+K G T + G+N+ S + ++ + LG+ TR
Sbjct: 265 FENIEQNNRNILLYRDNNVNGLKAGHTESGGYNLAVSYSGNGRHILVITLGSESAETRAS 324
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS------EEVCTTQKEIINYNT 308
++ LL+ K Q + + KE
Sbjct: 325 DNSKLLNRALQAFDTPKIYPKGKTVAQIQISGGSKKTVRAGFLKEAYITLPHKEAKMAEQ 384
Query: 309 QMKEAKDKESHFIDFEKITLLKNK 332
++ + +K +L
Sbjct: 385 ILET---IQPIPAPVKKGQILGKI 405
>gi|16801957|ref|NP_472225.1| hypothetical protein lin2897 [Listeria innocua Clip11262]
gi|16415432|emb|CAC98123.1| lin2897 [Listeria innocua Clip11262]
Length = 445
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/366 (20%), Positives = 138/366 (37%), Gaps = 40/366 (10%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 17 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 76
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + +TIS+ A + SN + G ++ + + + SAN A+
Sbjct: 77 LEAIDKGQLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYSVQELYEAMAIYSANGAAI 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN ++ L L F+N+ G+ + TAR
Sbjct: 137 AISEKIAGSEKEFVDLMNKKAEELKLGDHQFVNSTGLNNEDLKGGQQVGGPTDENKMTAR 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P + E + N NW + G DG+KTG
Sbjct: 197 GMAKLAKHLIDDYPDVLKTASTTKKEFRKGTSDQIDMSNWNWLLPGLIYGRKGVDGLKTG 256
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q ++ V+L A + R + +L F N ++
Sbjct: 257 TTDYAGMCLTATAVQDGMRVVTVVLHANGGGKGEHTSARFDETNKMLDYAFNNFKVKEVQ 316
Query: 274 NYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-SHFIDFEK 325
K + + V + N + K KE + +K
Sbjct: 317 KAGSKVKIPSTIAVDKGKEDTVGLITKDAVKLVVPKNDNEPKLSTKVKLKEKTLEAPVKK 376
Query: 326 ITLLKN 331
T +
Sbjct: 377 NTEVGE 382
>gi|149002408|ref|ZP_01827342.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
[Streptococcus pneumoniae SP14-BS69]
gi|237650527|ref|ZP_04524779.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CCRI
1974]
gi|237822666|ref|ZP_04598511.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae CCRI
1974M2]
gi|147759345|gb|EDK66337.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
[Streptococcus pneumoniae SP14-BS69]
Length = 413
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 150/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVIAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|56963593|ref|YP_175324.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
gi|56909836|dbj|BAD64363.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
Length = 380
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 82/353 (23%), Positives = 145/353 (41%), Gaps = 26/353 (7%)
Query: 1 MRQFLV------IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ +V + S + L++ ++G V+ P A
Sbjct: 1 MKKTIVHCLLVGFLFFFQSSEVLANEPATFPVSGQAAILMEQSSGRVLYSKNEHQPLKIA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK+MTA + K L +T+SK A S+ G +TL + + L+++
Sbjct: 61 SITKIMTAILAIESGK-----LDETVTVSKRAEGTEGSSLYLVAGEKLTLRDLVYGLMLR 115
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAIL 173
S ND A+AIAE + + + FV MN ++ +G+S T F N HG+ H ++A DMA+L
Sbjct: 116 SGNDAAIAIAEHVGGSVEGFVFLMNEKAEEIGMSNTLFRNPHGLDTDEDHLSSAYDMALL 175
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNW-AVGTFLGADGMKTGFTCASGFNIV 229
+ + +Y K KG K + N N + + G KTG+T + +V
Sbjct: 176 TQYAMGN-EEYRDISSTKDYRSKGDKVRVFHNKNRLLTEKYSYSTGGKTGYTKLAKRTLV 234
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNL 285
++A + LIAV L A D + + GF + + + ++ D + +
Sbjct: 235 STASKDGLDLIAVTLNAPDD---WDDHMHMFNWGFEHYSLERLVSKGKLKSKVDPFYEGN 291
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKD--KESHFIDFEKITLLKNKITKK 336
++ + T +K + +K K + E I L + K
Sbjct: 292 LYVPYDVVYPLTTEEKSQLQSALTLKNPPKRGKFTDQELLEPIGKLAFTVDGK 344
>gi|218132659|ref|ZP_03461463.1| hypothetical protein BACPEC_00519 [Bacteroides pectinophilus ATCC
43243]
gi|217992385|gb|EEC58388.1| hypothetical protein BACPEC_00519 [Bacteroides pectinophilus ATCC
43243]
Length = 436
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 18/270 (6%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ T L+D +TG ++ E PAS TK+MT+ + L I
Sbjct: 23 PASPTISAGSAILIDADTGAILYEKDCHSRAYPASTTKIMTSLLAIENS-----SLDDVI 77
Query: 81 TISK---NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
T SK N+ ++ +N+ ++G T++ AL ++KSAN++A I E + + F
Sbjct: 78 TFSKAAANSYKWDEANTGTREGEQFTMEQALYATLLKSANEVAYGIGEYIAGSIPAFSDM 137
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM----------HY 187
MN ++ LG THF N +G+ HYTTA D+A++ +
Sbjct: 138 MNERARELGALNTHFNNPNGLSDTNHYTTAYDLAMIGRACFNNSTFMTISSSVNYSIPPT 197
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ +++ N + G KTGFT SG+ ++ A + D LI V+
Sbjct: 198 NKTAETRYFRQRHGMANSNGYQYEYFKGGKTGFTDESGYTLITFAQKDDMRLICVVFRES 257
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYII 277
D +R S +L GF N + +
Sbjct: 258 DDASRYVDSKALFDYGFNNFKKAPISSSDV 287
>gi|121533591|ref|ZP_01665418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
carboxydivorans Nor1]
gi|121307582|gb|EAX48497.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermosinus
carboxydivorans Nor1]
Length = 384
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 83/321 (25%), Positives = 132/321 (41%), Gaps = 19/321 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
L+D TG V+ + PAS TK++TA + + L + +S
Sbjct: 27 PKLNCRAAVLMDAKTGQVLYDKDMHKRSAPASTTKILTAIIAIESGR-----LDEVVRVS 81
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
A+ S+ G T+TL + L+++S ND AVAIAE L + + F MN ++
Sbjct: 82 PRAAGTGGSSMNLYAGQTLTLRELVTGLMLRSGNDAAVAIAEHLAGSVEAFAAVMNKRAQ 141
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF--------PQYMHYFQIKGLEI 195
+G +HF+N HG+ GH++TA D+A L+ T+ + + +
Sbjct: 142 EIGAVNSHFVNPHGLTAPGHFSTAFDLAWLARYALTNPVFGQIVSTKETTIEWLDRSGRE 201
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ + NTN + ADG+KTG T +G +VASA +G+Q LIAV+L + R
Sbjct: 202 RDRNLRNTNKLLWMLEEADGVKTGTTSEAGPCLVASATRGNQRLIAVVLH---DHARWYN 258
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT---QKEIINYNTQMKE 312
S LL GF N + + + + V T E Y +
Sbjct: 259 SMMLLKHGFDNYDLYDYADEGAVLAAIPVENGQHGMVDAVVATPAALVVEAAAYPHVTVK 318
Query: 313 AKDKESHFIDFEKITLLKNKI 333
E + + I
Sbjct: 319 VDLPEKIKAPVYQGQKIGEII 339
>gi|15902820|ref|NP_358370.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae R6]
gi|116516506|ref|YP_816254.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae D39]
gi|1620468|emb|CAA67776.1| D,D-carboxypeptidase [Streptococcus pneumoniae]
gi|15458372|gb|AAK99580.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae R6]
gi|116077082|gb|ABJ54802.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
[Streptococcus pneumoniae D39]
Length = 413
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 151/367 (41%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L + ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGVSTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVIAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|316933618|ref|YP_004108600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris DX-1]
gi|315601332|gb|ADU43867.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris DX-1]
Length = 576
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 93/325 (28%), Positives = 160/325 (49%), Gaps = 17/325 (5%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
++D N+G V++ PD +PASLTK+MT Y++F L++ K L + + +S+ A
Sbjct: 54 PAFASIIVDGNSGAVLSATNPDSQRHPASLTKIMTLYLLFERLEQGKLSLDSEMEVSEFA 113
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
S P+ + G + +++A+K L+ +SAND AV IAE++ +E +F + M ++ LG
Sbjct: 114 SGQAPTKLGLRPGQKLRVEDAIKGLVTRSANDAAVVIAETIGGSEAEFARMMTRKARALG 173
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+S T + NA G+ TTARD +IL ++ FP+Y YF +G+ N N
Sbjct: 174 MSRTVYRNASGLPNSEQVTTARDQSILGRAVQDRFPRYYRYFSTSVFAYRGQSIRNHNRL 233
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+G+ G DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+
Sbjct: 234 LGSVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEK 293
Query: 267 KTDRKKINYIIK-----------------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
R+ + I + Q + +V + + E T+
Sbjct: 294 GATRRTVAAITERSSGSDDIEVAETSRSAPPVQVQGAVQVASAAPETVLPTPRPAAPLTR 353
Query: 310 MKEAKDKESHFIDFEKITLLKNKIT 334
A + + F T+ +
Sbjct: 354 SAAAPEPKPEPGPFNSGTIETKPLV 378
>gi|260587841|ref|ZP_05853754.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
20583]
gi|331083843|ref|ZP_08332952.1| hypothetical protein HMPREF0992_01876 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542106|gb|EEX22675.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
20583]
gi|330403268|gb|EGG82828.1| hypothetical protein HMPREF0992_01876 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 411
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 69/370 (18%), Positives = 134/370 (36%), Gaps = 41/370 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ + +A + + FP L E L+D +G V+ E + AS
Sbjct: 8 KILSLFLAFYISMSAFPVLVAGKGDEPENLYALSAALIDGESGRVLYEKNGEEKRPMAST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MT + L S+ A+ P + G + + L L+++S
Sbjct: 68 TKIMTCILTLE-----SGCLEEIAEASEKAARMPKVHLGASVGEKFYVKDLLYSLMLESH 122
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------HYTTAR 168
ND AV +AE + + + F + MN ++ +G T F+ +G+ H TTA
Sbjct: 123 NDSAVILAEHVGGSVEGFAEKMNEKAREIGCEDTWFITPNGLDAKEEREGEEKVHETTAE 182
Query: 169 DMAILSWRIKT---DFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTG 219
++A + +++ Q + N N + GA KTG
Sbjct: 183 NLAQIMRYCVCLSPAREEFLKITQTPSYRFSDADGKREFSCQNHNAFLSMMEGAISGKTG 242
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRKK---- 272
FT +G+ V + + ++LI +LG N + + L+ G +
Sbjct: 243 FTAQAGYCYVGALQRDGKTLIVALLGCGWPNNKGYKWSDTRKLMEYGLNEYSLHSFDEIE 302
Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-------SHFIDFEK 325
+ K+ +N N+ + + ++ +++ +KE ++ E +K
Sbjct: 303 FSKCPKEIPVKNAKNKELDKNSKISLVREKGEEKKILLKEGEEIEVSYHGKKKLTAPVKK 362
Query: 326 ITLLKNKITK 335
+ K
Sbjct: 363 GEKIGELRYK 372
>gi|167828274|ref|ZP_02459745.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9]
Length = 266
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 9/247 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ ++D ++G + + D PASLTKLMTAYV F L+ +T++ +
Sbjct: 1 AASWLVVDADSGKTLGAHNVDARREPASLTKLMTAYVAFDALERAALRWDDTVTVAADDI 60
Query: 88 EYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
G + + + ++ LIV SAND A+ +A+ + + F MN+T++
Sbjct: 61 ASVGRDEARMYLTPGQRVRVRDLMRGLIVASANDAALVLAKRIGGSPAGFATMMNDTARR 120
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
LG+ +HF++ G+ HY+TA D++IL+ R+ DFP + + + N N
Sbjct: 121 LGMRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRDFPAFYTFSSQRHFAYGAFAKTNKN 180
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAI------QGDQSLIAVILGALDRNTRNKVSAS 258
+G DGMKTG T A+G+ +V +A + +IAV+LG R + +
Sbjct: 181 RLLGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGARARHRVIAVLLGEPTEKQRLADARA 240
Query: 259 LLSMGFY 265
LL GF
Sbjct: 241 LLDQGFA 247
>gi|331085110|ref|ZP_08334196.1| hypothetical protein HMPREF0987_00499 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407893|gb|EGG87383.1| hypothetical protein HMPREF0987_00499 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 402
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 77/363 (21%), Positives = 135/363 (37%), Gaps = 36/363 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ L+ I +L P + E L+D + G V+ E AS TK
Sbjct: 1 MKKVLIGILTGVLLVSSPVSAKEEIEQLYAQSAVLMDADNGRVLFEKNGSEKKPMASTTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + LT + +S+NA+ P + + L + L L+++S ND
Sbjct: 61 IMTCILALEE-----GNLTDVVNVSENAARQPKVHLGMQMDEKFYLRDLLYSLMLESHND 115
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----VQHGHYTTARDMAILS 174
AVAIAE + + + F MN +K +G T+F+ +G+ H TTA D+A +
Sbjct: 116 SAVAIAEHIGGSVQAFADKMNAKAKEIGCRDTYFITPNGLDASDDNGEHSTTAEDLARIM 175
Query: 175 WRIKTDFPQYMHYFQIKG---------LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
P+ + I + N N + GA KTGFT +G
Sbjct: 176 SYCILKSPKKESFLSITQKGSYHFMDVDCHRSFSCQNHNAFLTMMDGALSGKTGFTGKAG 235
Query: 226 FNIVASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRKKI--NYIIKDF 280
+ V + ++ + +LG N + + L++ G N R+ ++D
Sbjct: 236 YCYVGALESRGRTFVVALLGCGWPNNKGYKWADTKRLMTYGMENYELREAFAGKEPLRDV 295
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMK-----------EAKDKESHFIDFEKITLL 329
+ N+ E+ K N+ ++ + +E E+ L
Sbjct: 296 TVKAGIPTSGNLFEKAHVPVKIEKIQNSPVEVLLHREEEIETVVELQEEVQAPIERYEKL 355
Query: 330 KNK 332
Sbjct: 356 GTV 358
>gi|89896454|ref|YP_519941.1| hypothetical protein DSY3708 [Desulfitobacterium hafniense Y51]
gi|89335902|dbj|BAE85497.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 428
Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats.
Identities = 73/282 (25%), Positives = 119/282 (42%), Gaps = 13/282 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+++ A+ P L+D TG + PDHP+ PAS TK+M+A
Sbjct: 16 LAMLLNFAVPVFGSPDKVPVPEISSEGAILIDITTGQTLFAKNPDHPYEPASTTKIMSAL 75
Query: 64 VVFSFLKEKKAMLTTPITISK---NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
+ L +T + + + G +TL+N L L++ SAND A
Sbjct: 76 IALEK-----GNLNDLVTAGPSVLDQELTQGTRIYLEPGEQVTLENLLYALLLNSANDAA 130
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE + + F MN +K +G T F N G+ GH TTARD+A+++ +
Sbjct: 131 VAIAEHIGGDIQGFTDLMNAKAKEIGALNTSFKNPSGLSADGHLTTARDLAMIARFAYQN 190
Query: 181 F-PQYMHYFQIKGLEIKGKK----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ + K + + N N + T GMKTG+T ++G VA+A +
Sbjct: 191 PVFRDYVKTKTKIIPRNRENIPTEMYNINEFIWTEPTVTGMKTGYTSSAGNTYVATAERD 250
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
++L+ V+L + + + L GF N +
Sbjct: 251 GRALLGVVLKSPSKTSIYTDMRKLFEYGFTNFENVVYKPKGT 292
>gi|307706421|ref|ZP_07643231.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis SK321]
gi|307618208|gb|EFN97365.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis SK321]
Length = 413
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 69/367 (18%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++ +++++++ + + + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIILTLLSLSVIGSASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYKLTTNSEASNVPMEARNYTVEQLLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSRKDDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+++ ++ + ++ D ++ E T+
Sbjct: 301 KGDAYQDSKAPVQDGKEDAVTAVAKDDITLIERVGGQSSQTIQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|119384494|ref|YP_915550.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans
PD1222]
gi|119374261|gb|ABL69854.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paracoccus denitrificans
PD1222]
Length = 568
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 93/264 (35%), Positives = 136/264 (51%), Gaps = 3/264 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG + D +PASLTK+MT Y+ F+ ++ + L + +S +A+ PPS
Sbjct: 47 DARTGQEVYAQNADTRLHPASLTKMMTLYMAFNAIERGQVRLDSKFLVSSHAAAQPPSRL 106
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
K G + L ++ VKSAND A I E L +E KF M ++ LG+ T+F N
Sbjct: 107 GLKPGQRIELRYLIRAAAVKSANDAATVIGEGLAGSEAKFAAQMTQMARALGMRNTNFRN 166
Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGA 213
A+G+ GHY+TARDM +L R+ DFPQY F + + +TN ++ GA
Sbjct: 167 ANGLTAEGHYSTARDMTVLGRRLFYDFPQYYSIFSRRSADAGIATVASTNKRFLDSYEGA 226
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
DG+KTG+T A+GFN+ ASA +G + +IA +LG RN+V A LL GF R +
Sbjct: 227 DGIKTGYTRAAGFNLTASAKRGSKRIIATVLGGTSTAHRNQVMAQLLDAGFGKAPTRVRE 286
Query: 274 NYIIKD--FYQQNLSNEVPNISEE 295
++ + V E
Sbjct: 287 VKPAPPQLVAEKKVRRTVQVARAE 310
>gi|303325746|ref|ZP_07356189.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio
sp. 3_1_syn3]
gi|302863662|gb|EFL86593.1| D-alanyl-D-alanine carboxypeptidase family protein [Desulfovibrio
sp. 3_1_syn3]
Length = 375
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 86/312 (27%), Positives = 147/312 (47%), Gaps = 8/312 (2%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + + L D + ++ E D PASLTK+++ ++ +
Sbjct: 35 AVAAPAVPPHGFVGVCSAILYDLDNDAILFEQNADEHIPPASLTKVLSMFLALDHISAGH 94
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
A + + +S+ A+ S + + L+ L + V S ND ++A+AE + +
Sbjct: 95 AAFDSVVPVSRAAARTGGSRMGLRNREQVPLEELLMGMAVSSGNDASMAVAEFVGGSAPA 154
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
FV MN ++ LG+ + F N HG+ G YTTARDM L+ +P + + L
Sbjct: 155 FVNMMNVKARTLGMRDSRFRNPHGLPAQGQYTTARDMLTLARAYLRAYPWALKFHNTHVL 214
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+G+ N N +G + GADG+KTG+ ASG+N++ +A +GD+ L+AVILGA D R
Sbjct: 215 NHQGRVTWNKNPLLGQYPGADGLKTGWVNASGYNLIFTASRGDKRLLAVILGAPDVRVRG 274
Query: 254 KVSASLLSMGFYNKTDRKK-----INYIIKDFYQQNLSNEVPNISEEVCTTQKEII---N 305
+ LL GF ++ + + ++ Y+ +L + Q E
Sbjct: 275 TEACRLLDAGFQVCGNQAVSVAAALTQMPQENYRLDLRKTAHEAGRQYAQAQPEARKQAK 334
Query: 306 YNTQMKEAKDKE 317
+ TQ K AK+K+
Sbjct: 335 HGTQSKYAKNKK 346
>gi|296447357|ref|ZP_06889284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
trichosporium OB3b]
gi|296255136|gb|EFH02236.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylosinus
trichosporium OB3b]
Length = 552
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 85/234 (36%), Positives = 138/234 (58%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
++D NTG + + +PAS+TK+MT Y++F L++ + L +P+ IS +A
Sbjct: 80 PAFAAIVVDANTGRTLYGRSENELRHPASITKVMTLYLLFEQLEKGRLRLDSPLVISAHA 139
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ P+ G T+ ++NA+K ++ KSANDIAVAIAE++ E F + M + +LG
Sbjct: 140 AAQSPTKLGLPPGQTIDVENAIKAVVTKSANDIAVAIAENIAGDEDAFAELMTRKAHSLG 199
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
++ TH+ NA G+ TTARD+A+L I+ FP Y YF +G+ + N N
Sbjct: 200 MTRTHYANASGLPNDAQITTARDLAVLGRAIQDRFPHYYRYFSTYSFTYRGQAHRNHNHL 259
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
+G G DG+KTG+T ASGFN+++S +G + ++AV+LG +R+ + A L+
Sbjct: 260 LGQIEGVDGIKTGYTRASGFNLLSSVRRGGRHIVAVVLGGTSGPSRDHIMAGLI 313
>gi|218663522|ref|ZP_03519452.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
[Rhizobium etli IE4771]
Length = 430
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 82/253 (32%), Positives = 135/253 (53%), Gaps = 1/253 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + + A+T Y ++D TG+V+ D PASLTK+MT Y+VF
Sbjct: 1 MALTVVLVDSVNAEAKTANPKYAGIVVDAKTGNVLYSENADRLQYPASLTKMMTLYMVFE 60
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND + A+ E L
Sbjct: 61 ALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDASTALGELL 120
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E +F Q M + LG++ T + NA+G+ TTARD A L ++ FPQY Y
Sbjct: 121 AGSEDRFAQLMTAKAHALGMTRTTYRNANGLPNTAQMTTARDQARLGIALRQHFPQYYGY 180
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + + + + N VG+ G DG+KTG+T A+GFN+V+S +S+++V+LG
Sbjct: 181 FSTRAFKFGSRTIRSHNRLVGSVRGVDGIKTGYTRAAGFNLVSSVQVDGKSIVSVVLGGT 240
Query: 248 DRNTRNKVSASLL 260
R+ +L+
Sbjct: 241 SGAARDAQMRNLI 253
>gi|319407377|emb|CBI81028.1| Penicillin-binding protein [Bartonella sp. 1-1C]
Length = 449
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 98/324 (30%), Positives = 162/324 (50%), Gaps = 4/324 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
++ + + + ++S + + E ++D NTG + + PASLTK+M
Sbjct: 13 KKVGIALTVLVISCSWAIATPKEAYPDKYAAIVIDANTGKTLFQANATLKRYPASLTKMM 72
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y++F +K + TPI IS A+ PP+ K G T++++ A K LI KSAND+A
Sbjct: 73 TVYMIFEAIKNGRVTPNTPIPISNYAATRPPTKIGIKAGQTISIEAATKALITKSANDVA 132
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
AI E L +E+KF Q M ++ LG+ THF NA G+ +Y+TA+DMA L+ ++
Sbjct: 133 TAIGEYLGGSEQKFAQMMTIKARKLGMKNTHFANASGLPDTRNYSTAQDMATLALALRRH 192
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F+ + +GK N N + T G DG+KTG+T SG N+ S +S++
Sbjct: 193 FPEQYKLFKTTHFKFRGKTINNHNTLIKTIKGVDGIKTGYTQMSGSNLATSMRINGRSIV 252
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE---VPNISEEVC 297
AV++G NTRN A+LL + + Y++ + +P +
Sbjct: 253 AVVMGGKSSNTRNIHMANLLKQYLPKASPVETNEYLVATARYKLPIGSATPIPLTKNNLI 312
Query: 298 TTQKEIINYNTQMKEAKDKESHFI 321
+ EI + T + E + + +
Sbjct: 313 NSDDEISSLLTALTEQPNDSNTAV 336
>gi|167759042|ref|ZP_02431169.1| hypothetical protein CLOSCI_01389 [Clostridium scindens ATCC 35704]
gi|167663449|gb|EDS07579.1| hypothetical protein CLOSCI_01389 [Clostridium scindens ATCC 35704]
Length = 406
Score = 167 bits (422), Expect = 2e-39, Method: Composition-based stats.
Identities = 72/376 (19%), Positives = 140/376 (37%), Gaps = 45/376 (11%)
Query: 1 MRQ---FLVIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHP 50
MR+ +++A +L F + + L+D ++G V+ +
Sbjct: 5 MRKNRLLGILLACILLIQPFSAQAKESDAADEPDNLYAQSAVLMDADSGRVLFGKNENEA 64
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
AS TK+MT + ++E + + S A+ P + L + L
Sbjct: 65 KPMASTTKIMTCIMALENMEEGQI-----VAASDYAASQPKVRLGVRGKEEYYLKDILYS 119
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTT 166
L+++S ND AV +AE + + + F MN ++ +G T+F+ +G+ + H TT
Sbjct: 120 LMLESHNDSAVVVAEGIAGSVEAFAGLMNQKAEEIGCKDTYFVTPNGLDAYDDGGTHSTT 179
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---------YPNTNWAVGTFLGADGMK 217
ARD+A + + P+ + +I G + N N + GA K
Sbjct: 180 ARDLASIMRYCIMESPKKDEFLEITGTKNYHFTNVAGDREFSCNNHNAFLDMMDGALTGK 239
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRKK-- 272
TGFT +G+ V + + ++ I +L N + K + +L+ G N R
Sbjct: 240 TGFTGDAGYCYVGALRKDGKTFIVALLACGWPNNKDYKWKDTKALMEYGLANYEYRNVWE 299
Query: 273 ------------INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ + + V +EV K + K ++
Sbjct: 300 EPALSQIRVQEGVSAGNPYKRESKVQAVVKGGEKEVNALLKADEKAEVKRKVKDHLKAPL 359
Query: 321 IDFEKITLLKNKITKK 336
+K+ ++ + K
Sbjct: 360 KKGQKVGEIQYLLEGK 375
>gi|148256123|ref|YP_001240708.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
BTAi1]
gi|146408296|gb|ABQ36802.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase
S11)(DD-carboxypeptidase) [Bradyrhizobium sp. BTAi1]
Length = 590
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 91/252 (36%), Positives = 143/252 (56%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
++D N+G V+ PD +PASLTK+MT Y++F L K L T + +S++A
Sbjct: 57 PAFASIVVDGNSGAVLTATNPDALRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHA 116
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
SE P+ + G T+ +++A+K L+ +SAND AV IAE++ E +F + M ++ LG
Sbjct: 117 SEQSPTKLGLRPGQTIRVEDAIKGLVTRSANDAAVVIAEAIGGDEDEFAKMMTRKARALG 176
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+S T ++NA G+ TTARD +IL I+ FP+Y YF +G+ N N
Sbjct: 177 MSRTTYVNASGLPADEQITTARDQSILGRAIQDRFPRYYRYFSTVVFNYRGQSIRNHNHL 236
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+G G DG+KTG+T ASGFNIV S +G++ L+ V+LG +R+ + +LL+
Sbjct: 237 LGNVEGIDGIKTGYTRASGFNIVTSLRRGNRHLVGVVLGGRSGGSRDAIMRNLLAENLEK 296
Query: 267 KTDRKKINYIIK 278
R+ + I +
Sbjct: 297 GATRRTVAAIGE 308
>gi|192291929|ref|YP_001992534.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris TIE-1]
gi|192285678|gb|ACF02059.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris TIE-1]
Length = 585
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 91/268 (33%), Positives = 147/268 (54%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
++D NTG V+ PD +PASLTK+MT Y++F L++ K L + + +S++A
Sbjct: 55 PAFASIIVDGNTGAVLTATNPDSLRHPASLTKIMTLYLLFEKLEQGKLSLDSEMEVSEHA 114
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
SE P+ + GST+ +++A+K L+ +SAND AV IAE++ +E F + M ++ LG
Sbjct: 115 SEQAPTKLGLRPGSTLRVEDAIKGLVTRSANDAAVVIAETVGGSESDFAKLMTRKARALG 174
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+S T + NA G+ TTARD +IL I+ FP+Y YF +G N N
Sbjct: 175 MSRTVYRNASGLPNDEQVTTARDQSILGRAIQDRFPRYYRYFATSVFNYRGHAIRNHNRL 234
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+G G DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+
Sbjct: 235 LGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEK 294
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISE 294
R+ + I + + + +
Sbjct: 295 GATRRTVAAISERSSGSDETEVAEDTRP 322
>gi|39936213|ref|NP_948489.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris CGA009]
gi|39650068|emb|CAE28591.1| possible D-alanyl-D-alanine carboxypeptidase [Rhodopseudomonas
palustris CGA009]
Length = 585
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 91/268 (33%), Positives = 147/268 (54%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
++D NTG V+ PD +PASLTK+MT Y++F L++ K L + + +S++A
Sbjct: 55 PAFASIIVDGNTGAVLTATNPDSLRHPASLTKIMTLYLLFEKLEQGKLSLDSEMEVSEHA 114
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
SE P+ + GST+ +++A+K L+ +SAND AV IAE++ +E F + M ++ LG
Sbjct: 115 SEQAPTKLGLRPGSTLRVEDAIKGLVTRSANDAAVVIAETVGGSESDFAKLMTRKARALG 174
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+S T + NA G+ TTARD +IL I+ FP+Y YF +G N N
Sbjct: 175 MSRTVYRNASGLPNDEQVTTARDQSILGRAIQDRFPRYYRYFATSVFNYRGHAIRNHNRL 234
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+G G DG+KTG+T ASGFN+V S +G++ L+ V+LG +R+ + +LL+
Sbjct: 235 LGNVEGVDGIKTGYTRASGFNLVTSMHRGNRFLVGVVLGGRSGGSRDAIMRNLLAENLEK 294
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISE 294
R+ + I + + + +
Sbjct: 295 GATRRTVAAISERSSGSDETEVAEDTRP 322
>gi|150015409|ref|YP_001307663.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
NCIMB 8052]
gi|149901874|gb|ABR32707.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
NCIMB 8052]
Length = 411
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/348 (21%), Positives = 131/348 (37%), Gaps = 31/348 (8%)
Query: 1 MRQF------LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ L + + L+D +TG V+ + PA
Sbjct: 1 MKRIFKTFNILFLFLFCFTYTSVQAETQPPQINAEGCALIDASTGQVLYGKNEEKVLEPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S TK+MTA + K L +T+ ++ ++ + KG +T+ + L L+++
Sbjct: 61 STTKVMTAIITLEKCK-----LDDEVTVQEDFTKIDGTAVGLLKGDVVTVRDLLLGLLLE 115
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND A A+A+ + + + F + MN +K LG T+F N G+ H TTA D+A+
Sbjct: 116 SGNDCANALADHISGSTEAFSKLMNEKAKELGALHTNFKNPSGLPDPEHTTTAHDLALFL 175
Query: 175 WRIKTDFP------QYMHYFQIKGLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCA 223
+ + +K K N N+ + A K G+T
Sbjct: 176 REAINNKDYVQLSTTPNYTITLKNNPSKTIVLNNKNYMINKNSRYYYPFALCGKNGYTTK 235
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
S VA+A + L+A L ALD++ ++L+ GF N + +
Sbjct: 236 SNHTYVAAAEKNGHVLVASFLNALDKDQNFHDMQAVLNYGFDNYSLVHLYQKGDEVSQY- 294
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQM-KEAKDKESHFIDFEKITLLK 330
I+ + + + + K +D S I + L K
Sbjct: 295 -------KITNNLTIPVMASRDIDYDVPKGQEDSVSSEIKIQDQDLSK 335
>gi|168484754|ref|ZP_02709699.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC1873-00]
gi|172042076|gb|EDT50122.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC1873-00]
Length = 413
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|254501213|ref|ZP_05113364.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
DFL-11]
gi|222437284|gb|EEE43963.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
DFL-11]
Length = 473
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 98/287 (34%), Positives = 155/287 (54%), Gaps = 4/287 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R L I+A A+ + + AE Y L+D G V+ + W PASLTK+MT
Sbjct: 9 RSALPILAAALGFFLMAAPARAEIGT---YILVDARNGAVVDQKNATRKWYPASLTKMMT 65
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
AYV F ++E + L + + SKN++ PPS FK G+ T+D ALK++++KSAND++V
Sbjct: 66 AYVTFKAIREGRVALDSAVVQSKNSAAEPPSKMGFKVGTKFTIDTALKIILIKSANDVSV 125
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+ E++ +E F+ MN ++ LG++ T F N HG+ + TTARDMAIL+ ++ DF
Sbjct: 126 ALGEAVSGSENAFLAEMNAEARRLGMTNTRFTNPHGLPDNRQVTTARDMAILAMALRKDF 185
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P+ +++ G+ K + N GA+GMKTG+ C SGFN+ +S + ++LI
Sbjct: 186 PEAREFYKHPGIRFGKKTLRSANREFLLRVPGANGMKTGYICNSGFNVASSVTRRGRTLI 245
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
A+I+GA R + L GF + + + +
Sbjct: 246 AIIMGASSGLERTAFARQLFDEGFRKGSRGQNVKSLSGSSGNPPADG 292
>gi|121597580|ref|YP_989692.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei SAVP1]
gi|167002262|ref|ZP_02268052.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei PRL-20]
gi|121225378|gb|ABM48909.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei SAVP1]
gi|243062001|gb|EES44187.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei PRL-20]
Length = 511
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 13/276 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ + ++ A + ++D ++G + + D PASLTK
Sbjct: 27 RLFAALFVSAACAAPNGARAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTK 86
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKS 115
LMTAYV F L+ +T++ + G + + + ++ LIV S
Sbjct: 87 LMTAYVAFDALERAALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVAS 146
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+ +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+
Sbjct: 147 ANDAALVLAKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPNHYSTAHDLSILAQ 206
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-- 233
R+ DFP + + + N N +G DGMKTG T A+G+ +V +A
Sbjct: 207 RLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRP 266
Query: 234 ----QGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ +IAV+LG R + +LL GF
Sbjct: 267 VGGARARHRVIAVLLGEPTEKQRLADARALLDQGFA 302
>gi|153938417|ref|YP_001392255.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum F str. Langeland]
gi|152934313|gb|ABS39811.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum F str. Langeland]
Length = 415
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 79/348 (22%), Positives = 137/348 (39%), Gaps = 25/348 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+ I ++L F ++A L+D+ TG +I PD P+
Sbjct: 1 MKLIFYKILCSILLFSLFFSNVAWAKDSKPNLKIAADGVVLMDSKTGKIIYSKNPDKPYP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS TK+MTA + + L +TI + S +G + + + L L+
Sbjct: 61 PASTTKIMTALLTLE-----RGNLDDIVTIGRKPPLAEGSKIYILEGEKIKVRDLLYGLL 115
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ SAND A A+AE L + F + MN +K LG + T+F+N G+ H T+ARD+AI
Sbjct: 116 LASANDCAEALAEYLSGSLDNFSKDMNKRAKELGCTNTNFVNPSGLYNDKHRTSARDLAI 175
Query: 173 LSWRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFT 221
+ + + + + N N + + G +G KTG+T
Sbjct: 176 IMNELVKQPEYSKIATTLSYNIPPTNKSKEKRPLWNENKLIQKHSNFYYKGCEGGKTGYT 235
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
S + VAS + + +I ++ S L + GF N T
Sbjct: 236 VQSDHSYVASVNKDNHRIIVALVH-DKEKNFFDDSVKLFNYGFNNFTLDLLYPKDSYVTT 294
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
N + +VP + + K + + ++ + F+K ++
Sbjct: 295 YTNDNLKVPLYASKDFYYLKPKDDNMAPDLKLENTNLKNLKFKKGDVV 342
>gi|219667694|ref|YP_002458129.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
hafniense DCB-2]
gi|219537954|gb|ACL19693.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
hafniense DCB-2]
Length = 423
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 81/292 (27%), Positives = 126/292 (43%), Gaps = 20/292 (6%)
Query: 1 MRQFLVII-AMAMLSNIF------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
MR V+ A+AML N P L+D TG + PDHP+ P
Sbjct: 1 MRLIAVLFTALAMLLNFAVPVFGSPDKVPVPELSSEGAILIDITTGQTLFAKNPDHPFEP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYPPSNSTFKKGSTMTLDNALKL 110
AS TK+M+A + L +T + + + G +TL+N L
Sbjct: 61 ASTTKIMSALIALEK-----GNLNDLVTAGPSVLDQELTQGTRIYLEPGEQVTLENLLYA 115
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
L++ SAND AVAIAE + + F MN +K +G T F N G+ + GH TTARD+
Sbjct: 116 LLLNSANDAAVAIAEHIGGDVQGFTDLMNAKAKEIGALNTSFKNPSGLSEDGHLTTARDL 175
Query: 171 AILSWRIKT-----DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
A+++ D+ + + E + N N + T GMKTG+T ++G
Sbjct: 176 AMIARFAYQNPVLRDYVKTKTKIIPRNRENIPTEMYNINEFIWTEPTVTGMKTGYTTSAG 235
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
VA+A + ++L+ V+L + + + +L GF N +
Sbjct: 236 NTYVATAERDGRALLGVVLKSPSKTSIYTDMRNLFEYGFTNFENVVYKPKGT 287
>gi|298291483|ref|YP_003693422.1| serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
gi|296927994|gb|ADH88803.1| Serine-type D-Ala-D-Ala carboxypeptidase [Starkeya novella DSM 506]
Length = 570
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 94/340 (27%), Positives = 162/340 (47%), Gaps = 20/340 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---TNKLPYY----------------TLLDTNTGHV 41
MR + ++A++++ + + T + ++D NTG +
Sbjct: 12 MRVAVAVLAISLVGAGVAEAASKKKKRTARNKAAVTRTVASGDWHRGYSDIIIDANTGRI 71
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ E D +PAS+TK+MT Y++F L+ K L TP+ +S A+ PS K GST
Sbjct: 72 LHEQNADALRHPASVTKVMTLYLLFEQLQAGKMRLNTPLRVSAYAASQQPSKLGVKPGST 131
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ +++A++ LI +SAND+AV +AE++ F M ++ LG+S T F N +G+
Sbjct: 132 IVVEDAIQALITRSANDVAVVVAENISGDASTFAALMTRRARQLGMSRTTFRNPNGLPNP 191
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
TTARD+A L I+ FP+Y YF+ + +G+ N N G G DG+KTG+T
Sbjct: 192 QQVTTARDLATLGRAIQERFPKYYAYFETRSFMYRGQAIRNHNRMFGRINGVDGIKTGYT 251
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF-YNKTDRKKINYIIKDF 280
ASGFN++ S Q + +I V++G +R+ +LLS + R+++ +
Sbjct: 252 NASGFNLLTSVKQNGRYVIGVVMGGASAASRDNRMVALLSDAMPKSYAGRQQVARMDSVP 311
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ V ++ + +E K +
Sbjct: 312 SGAADDDVVTPVALAAAEPTPTPVAAPAVAQEVARKPATI 351
>gi|153009485|ref|YP_001370700.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
ATCC 49188]
gi|151561373|gb|ABS14871.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
ATCC 49188]
Length = 404
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 75/256 (29%), Positives = 134/256 (52%), Gaps = 4/256 (1%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+I ++A+ +++ + + + D ++G ++ ++ + PASL K+MT Y+
Sbjct: 11 LIASLALGASVLCTSAAMANT---SWVVFDADSGRILGQDDANVQRAPASLAKMMTLYLA 67
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F LK + + +SKNA+ K G T+T+ +A+ +I+ SAND A + E
Sbjct: 68 FEGLKTGRLHWDDAMPVSKNAAAKVRMKLWLKPGETITVRDAINGMIIVSANDAATVMGE 127
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQY 184
+ +E F + M ++ +G+ +T F+N G+ TTARDMA+L ++ DFP+
Sbjct: 128 YIAGSEAAFGRLMTQRARQIGMKSTFFVNPSGLTAKSTQLTTARDMAVLGMSLRRDFPEQ 187
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F + + + N + + G DG+KTG+T SG+N+V+SA+ D+ L+ V+L
Sbjct: 188 YELFSQRSFTFRDRVRNGHNNLMYRYQGVDGIKTGYTDVSGYNLVSSAVINDKHLVGVVL 247
Query: 245 GALDRNTRNKVSASLL 260
GA R+ A LL
Sbjct: 248 GAGSARQRDDQMAKLL 263
>gi|114706870|ref|ZP_01439770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Fulvimarina pelagi
HTCC2506]
gi|114537818|gb|EAU40942.1| Serine-type D-Ala-D-Ala carboxypeptidase [Fulvimarina pelagi
HTCC2506]
Length = 387
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 76/321 (23%), Positives = 131/321 (40%), Gaps = 10/321 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
P + D TG V+ E D PASL KLMT VVF L++ T+S
Sbjct: 28 FETSAPTAFMKDFATGRVLFEKNADMEVEPASLAKLMTIAVVFDELEKGTISRDQTFTVS 87
Query: 84 KNASEYPPSN-----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
++A +N G +++D+ LK +I++S ND + IAE + + F M
Sbjct: 88 EDAWRTGGANSGGSTMFLPLGGEVSVDDLLKGIIIQSGNDATIVIAEGIAGSVDAFADMM 147
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ +GL+ + F N+ G+ + T RD+ L+ + ++P+ F + G
Sbjct: 148 NKRAQAIGLTHSRFGNSSGLPHPDSHVTMRDLVTLAEHLIREYPEEYPAFAEESYRYNGI 207
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
N N + GADG+KTG T A+G+ +VASA + ++ + N R + S
Sbjct: 208 TQNNRNPLLSL--GADGLKTGHTQAAGYGLVASAEADGRRVVFALSRMASSNERARESQR 265
Query: 259 LLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
++ G + + + + +EV S E + + + D
Sbjct: 266 MMEFGLQDFEEVTLAEEGETVATVPVRGGVLDEVALRSPERVALLVPTGSLSDARRVIVD 325
Query: 316 KESHFIDFEKITLLKNKITKK 336
+ L K+
Sbjct: 326 NGPVEAPVTEGQRLGWLQIKR 346
>gi|225420336|ref|ZP_03762639.1| hypothetical protein CLOSTASPAR_06680 [Clostridium asparagiforme
DSM 15981]
gi|225041022|gb|EEG51268.1| hypothetical protein CLOSTASPAR_06680 [Clostridium asparagiforme
DSM 15981]
Length = 595
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/333 (22%), Positives = 135/333 (40%), Gaps = 29/333 (8%)
Query: 1 MRQFLVI-IAMAMLSNIFPFLSIAE-----TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ + +A A+ + + T + +++ TG V+ D P+ PA
Sbjct: 1 MKRLFALCLAFALCAVPMTAWAAPAWPSGVTIQADGGIVMEAGTGTVLYGKNMDQPYYPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK++TA +V + + + + E S++ +G +T+ + L L++
Sbjct: 61 SITKILTALIVIESCDLDEIVTFSHDAV--YNVEADSSSAGIDEGDQLTVRDCLYALLLA 118
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAN+ A A+AE + T + F MN + +LG + +HF N G+ HYTTA DMA ++
Sbjct: 119 SANESANALAEHVSGTREAFADLMNQRAASLGCTGSHFANPSGLNDENHYTTAHDMAKIA 178
Query: 175 WRIKTDFPQYMHYFQIK-----------------GLEIKGKKYPNTNWAVGTFLGADGMK 217
+ K N N + GA K
Sbjct: 179 QAAIQNPTFVEICGSRTYRLPNMKRAPAEKFPDGYPIANHHKMWNRN-DAAYYNGAFCGK 237
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
TG+T +G +V A +GD +LIAV+L T + ++L GF N K I+
Sbjct: 238 TGYTSLAGNTLVTCAKRGDMTLIAVVLN--GHLTHYTDTKAMLDFGFGNFQSLK-ISEFE 294
Query: 278 KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+ + + ++ + + + +
Sbjct: 295 TTYTSLDNDMTIAGMTAKDTISLDLDEDSRIVI 327
>gi|194396776|ref|YP_002037508.1| penicillin-binding protein 3, D-alanyl-D-alanine carboxypeptidase
[Streptococcus pneumoniae G54]
gi|194356443|gb|ACF54891.1| penicillin-binding protein 3, D-alanyl-D-alanine carboxypeptidase
[Streptococcus pneumoniae G54]
Length = 413
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 73/367 (19%), Positives = 148/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFARMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|149010495|ref|ZP_01831866.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP19-BS75]
gi|147764976|gb|EDK71905.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP19-BS75]
Length = 413
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 148/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + ++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEVSNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|188586265|ref|YP_001917810.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350952|gb|ACB85222.1| Serine-type D-Ala-D-Ala carboxypeptidase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 387
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 79/350 (22%), Positives = 142/350 (40%), Gaps = 31/350 (8%)
Query: 6 VIIAMAMLSNIFPFLSIAET--------------NKLPYYTLLDTNTGHVIAENYPDHPW 51
+II + +L+N ++ E L+D TG V+ E
Sbjct: 16 LIIGLLVLANSNLTNALPEEDLYELKEIEELEEEITATSACLVDVKTGRVLYEQNSHKQL 75
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS TK+MTA + + L +T S+ ASE S+ ++ +TL+ L L
Sbjct: 76 PMASTTKVMTALLSLE-----RGNLNEVVTASEAASEVEGSSIYLQEDEQLTLEAMLYGL 130
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+++S ND A AIAE + + F ++M + +++LG T+F N HG+ HY+TA DM
Sbjct: 131 MLESGNDAAHAIAEHIDGDIESFARNMTDRAESLGAKNTNFQNPHGLPSDNHYSTAYDMT 190
Query: 172 ILSWRIKTDFP------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
I++ + + + N N + ADG+KTG+T A+G
Sbjct: 191 IIAKEALKKSKFAEIVSTKEKLIPWEKGDADWRYLNNDNKLLDELSEADGVKTGWTEAAG 250
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQ 282
++ S + ++ ++ +L A + + +LL G Y +++ I + +
Sbjct: 251 RCLIFSGTKDERQVVGTVLKAP---KMYQDAENLLEYGIYQFNEKQVIQKGQLVREVPVE 307
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + VP ++ E Y K + EK +
Sbjct: 308 KGKYSTVPVVAGSEIVLPLESQEYRDLNYHIKIPKKLQAPLEKGEEIGTL 357
>gi|53722262|ref|YP_111247.1| peptidase [Burkholderia pseudomallei K96243]
gi|52212676|emb|CAH38706.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243]
Length = 333
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 13/276 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ + ++ A + ++D ++G + + D PASLTK
Sbjct: 27 RLFAALFVSAACAAPNGARAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTK 86
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKS 115
LMTAYV F L+ +T++ + G + + + ++ LIV S
Sbjct: 87 LMTAYVAFDALERDALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVAS 146
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+ +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+
Sbjct: 147 ANDAALVLAKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQ 206
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-- 233
R+ DFP + + + N N +G DGMKTG T A+G+ +V +A
Sbjct: 207 RLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRP 266
Query: 234 ----QGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ +IAV+LG R + +LL GF
Sbjct: 267 VGGARARHRVIAVLLGEPTEKQRLADARALLDQGFA 302
>gi|315644241|ref|ZP_07897411.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
vortex V453]
gi|315280616|gb|EFU43905.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
vortex V453]
Length = 330
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/293 (25%), Positives = 123/293 (41%), Gaps = 28/293 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
+++L ++ + +++ + I L+D NTG ++ D P P
Sbjct: 3 KRWLWLVMVLLITVPIGAVVIGNIERAGFRPKVDARAVVLMDLNTGRILLSENGDIPLPP 62
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS++KLMT V+ +K K + IS AS K G +T+ + + V
Sbjct: 63 ASMSKLMTELVILDDIKTGKKSWDDEVQISDTASGVSGIKIALKSGEFLTVRELFQSITV 122
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL------------SATHFMNAHGVVQH 161
SAND AVA+AE +E+ FVQ MN +K +G+ + + +
Sbjct: 123 YSANDAAVALAEHFAGSEEAFVQKMNAKAKEIGMSSSTHFVNASGVESHTDNDQEWSSER 182
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWA------VGTFLGA 213
TA D A L+ + P + +I G+ NTNW ++ G
Sbjct: 183 ETVMTAEDTAKLAAHLIKSHPDILSTSSKTQTKISGRNLYLSNTNWMLPSLGGPYSYEGT 242
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
DG+KTG+T +G+ +A + LIAV++G + R + + L GF
Sbjct: 243 DGLKTGYTVNAGYCFTGTAEKQGSRLIAVVMGTESKEARFEETRKLFDYGFAK 295
>gi|168490961|ref|ZP_02715104.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC0288-04]
gi|221231651|ref|YP_002510803.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae ATCC
700669]
gi|225854380|ref|YP_002735892.1| penicillin-binding protein 3 [Streptococcus pneumoniae JJA]
gi|38142283|dbj|BAD00944.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142293|dbj|BAD00949.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142313|dbj|BAD00959.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142321|dbj|BAD00963.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142323|dbj|BAD00964.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142343|dbj|BAD00974.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142355|dbj|BAD00980.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|66817132|gb|AAY56862.1| penicillin-binding protein 3 [Streptococcus pneumoniae ATCC 700669]
gi|183574667|gb|EDT95195.1| penicillin-binding protein 3 [Streptococcus pneumoniae CDC0288-04]
gi|220674111|emb|CAR68630.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
pneumoniae ATCC 700669]
gi|221327902|gb|ACM17687.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|221327910|gb|ACM17691.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|225723264|gb|ACO19117.1| penicillin-binding protein 3 [Streptococcus pneumoniae JJA]
Length = 413
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|15900755|ref|NP_345359.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
TIGR4]
gi|148993686|ref|ZP_01823133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP9-BS68]
gi|149026353|ref|ZP_01836508.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP23-BS72]
gi|168485819|ref|ZP_02710327.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
CDC1087-00]
gi|168490307|ref|ZP_02714506.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP195]
gi|168493026|ref|ZP_02717169.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
CDC3059-06]
gi|182683787|ref|YP_001835534.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
CGSP14]
gi|303255291|ref|ZP_07341362.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
BS455]
gi|303260392|ref|ZP_07346361.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP-BS293]
gi|303262749|ref|ZP_07348687.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP14-BS292]
gi|303265038|ref|ZP_07350952.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
BS397]
gi|303267132|ref|ZP_07353001.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
BS457]
gi|303269372|ref|ZP_07355143.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
BS458]
gi|307127577|ref|YP_003879608.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
670-6B]
gi|14972344|gb|AAK74999.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
TIGR4]
gi|38142277|dbj|BAD00941.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142279|dbj|BAD00942.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142287|dbj|BAD00946.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142305|dbj|BAD00955.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142307|dbj|BAD00956.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142309|dbj|BAD00957.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142325|dbj|BAD00965.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142329|dbj|BAD00967.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142347|dbj|BAD00976.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142349|dbj|BAD00977.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|55167245|dbj|BAD67449.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|66817134|gb|AAY56863.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|66817138|gb|AAY56865.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|147927766|gb|EDK78789.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP9-BS68]
gi|147929315|gb|EDK80314.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP23-BS72]
gi|182629121|gb|ACB90069.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
CGSP14]
gi|183570937|gb|EDT91465.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
CDC1087-00]
gi|183571353|gb|EDT91881.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP195]
gi|183577020|gb|EDT97548.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
CDC3059-06]
gi|221327900|gb|ACM17686.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|221327904|gb|ACM17688.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|221327908|gb|ACM17690.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|221327914|gb|ACM17693.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|221327916|gb|ACM17694.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|221327922|gb|ACM17697.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|221327924|gb|ACM17698.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|301801696|emb|CBW34402.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
pneumoniae INV200]
gi|302597760|gb|EFL64835.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
BS455]
gi|302636071|gb|EFL66568.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP14-BS292]
gi|302638427|gb|EFL68893.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP-BS293]
gi|302641090|gb|EFL71466.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
BS458]
gi|302643340|gb|EFL73618.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
BS457]
gi|302645398|gb|EFL75631.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
BS397]
gi|306484639|gb|ADM91508.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
670-6B]
gi|332077286|gb|EGI87748.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
GA17545]
gi|332204028|gb|EGJ18095.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
GA47368]
Length = 413
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|225858672|ref|YP_002740182.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
70585]
gi|225720794|gb|ACO16648.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
70585]
Length = 413
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKTFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|167819885|ref|ZP_02451565.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 91]
Length = 309
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 13/276 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ + ++ A + ++D ++G + + D PASLTK
Sbjct: 27 RLFAALFVSAACAAPNGARAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTK 86
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKS 115
LMTAYV F L+ +T++ + G + + + ++ LIV S
Sbjct: 87 LMTAYVAFDALERDALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVAS 146
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+ +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+
Sbjct: 147 ANDAALVLAKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQ 206
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-- 233
R+ DFP + + + N N +G DGMKTG T A+G+ +V +A
Sbjct: 207 RLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRP 266
Query: 234 ----QGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ +IAV+LG R + +LL GF
Sbjct: 267 VGGARARHRVIAVLLGEPTEKQRLADARALLDQGFA 302
>gi|167915042|ref|ZP_02502133.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 112]
Length = 333
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 13/276 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ + ++ A + ++D ++G + + D PASLTK
Sbjct: 27 RLFAALFVSAACAAPNGARAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTK 86
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKS 115
LMTAYV F L+ +T++ + G + + + ++ LIV S
Sbjct: 87 LMTAYVAFDALERDALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVAS 146
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+ +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+
Sbjct: 147 ANDAALVLAKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQ 206
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-- 233
R+ DFP + + + N N +G DGMKTG T A+G+ +V +A
Sbjct: 207 RLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRP 266
Query: 234 ----QGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ +IAV+LG R + +LL GF
Sbjct: 267 VGGARARHRVIAVLLGEPTEKQRLADARALLDQGFA 302
>gi|239906564|ref|YP_002953305.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio
magneticus RS-1]
gi|239796430|dbj|BAH75419.1| putative D-alanyl-D-alanine carboxypeptidase [Desulfovibrio
magneticus RS-1]
Length = 364
Score = 167 bits (421), Expect = 3e-39, Method: Composition-based stats.
Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 2/251 (0%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
FP + + + + +G + D P PASLTK+MT YVVF + KA
Sbjct: 24 TAFPAKNAG-KLAVKSALVTEYGSGKTLYSQDADRPIPPASLTKVMTMYVVFDLVASGKA 82
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
I +S+ A S + G +TLD ++ + V S ND +A+AE F
Sbjct: 83 SFADRIKVSRGADRTGGSTMGLRAGEIVTLDELMRGMAVASGNDACIAVAEHFGGV-PTF 141
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MN ++ LG++ T F N +G+ G YTTARD+ L+ +PQ + Y +
Sbjct: 142 VGLMNRKARELGMTGTTFKNPNGLPAAGQYTTARDLTKLAVSYLRHYPQALRYHSTTEIN 201
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
G + NTN + ++ GADG+KTG+ ASG+NI+A+A +GD +IAV+LG + RN+
Sbjct: 202 HNGAVHGNTNRLLASYDGADGIKTGYVDASGYNIIATAKRGDTRVIAVVLGGRTKQVRNR 261
Query: 255 VSASLLSMGFY 265
+ +L F
Sbjct: 262 EAVRILDASFS 272
>gi|225856538|ref|YP_002738049.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
P1031]
gi|38142339|dbj|BAD00972.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|225726015|gb|ACO21867.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
P1031]
Length = 413
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 150/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L + ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGVSTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|253576372|ref|ZP_04853702.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844265|gb|EES72283.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 399
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 88/354 (24%), Positives = 141/354 (39%), Gaps = 36/354 (10%)
Query: 1 MRQ---------FLVIIAMAMLSN-----IFPFLSIAETNKLPYYTLLDTNTGHVIAENY 46
M++ F ++A +L A + ++D +G ++ +
Sbjct: 1 MKKDSHDRRLHSFCCLLAAVLLFAWLNPQAVQAAPDAPSIHAQAAAVIDVTSGRLLYSLH 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
D ASLTK+MTA V K L+ +T+ KNA S+ G M+L+N
Sbjct: 61 GDDELPIASLTKIMTAIVAIEHGK-----LSDMVTVGKNAYGKEGSSLYLHLGEEMSLEN 115
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
L L+++S ND A AIAE + +E+ FV MN +K LGL+ THF N HG+ GHY++
Sbjct: 116 MLYGLMLRSGNDAATAIAEHVGGSEEGFVYLMNEKAKLLGLTHTHFQNPHGLDAKGHYSS 175
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFT 221
A D+A L+ + K+ N N + + GADG+KTG+T
Sbjct: 176 ANDLAKLTSYALKNPHFKEIVRTPSKTAPNPNDPWDYKWLNKNKMLRFYDGADGVKTGYT 235
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---- 277
+ +V+SA + Q + V L D LL F N I+
Sbjct: 236 KTARRCLVSSATRNGQQIAVVTLNDGDD---WNDHRKLLDYSFANFPLTTLISKGQAIEN 292
Query: 278 -----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
DF EV + + + ++ + + + I +
Sbjct: 293 GLVTGADFKYALAPEEVGKVERRLKLVEARTGSFGYRGRISVRLNGEEIGTVPV 346
>gi|53716694|ref|YP_105744.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei ATCC 23344]
gi|67641067|ref|ZP_00439854.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei GB8 horse 4]
gi|124381420|ref|YP_001024168.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei NCTC 10229]
gi|126447167|ref|YP_001078428.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei NCTC 10247]
gi|254200552|ref|ZP_04906917.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei FMH]
gi|254204580|ref|ZP_04910933.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei JHU]
gi|52422664|gb|AAU46234.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei ATCC 23344]
gi|124289440|gb|ABM98709.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
10229]
gi|126240021|gb|ABO03133.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
10247]
gi|147748164|gb|EDK55239.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei FMH]
gi|147754166|gb|EDK61230.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei JHU]
gi|238521922|gb|EEP85370.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei GB8 horse 4]
Length = 333
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 13/276 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ + ++ A + ++D ++G + + D PASLTK
Sbjct: 27 RLFAALFVSAACAAPNGARAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTK 86
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKS 115
LMTAYV F L+ +T++ + G + + + ++ LIV S
Sbjct: 87 LMTAYVAFDALERAALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVAS 146
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+ +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+
Sbjct: 147 ANDAALVLAKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPNHYSTAHDLSILAQ 206
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-- 233
R+ DFP + + + N N +G DGMKTG T A+G+ +V +A
Sbjct: 207 RLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRP 266
Query: 234 ----QGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ +IAV+LG R + +LL GF
Sbjct: 267 VGGARARHRVIAVLLGEPTEKQRLADARALLDQGFA 302
>gi|313635871|gb|EFS01844.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria seeligeri FSL
S4-171]
Length = 445
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 77/367 (20%), Positives = 141/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A T ++ +TG ++ D AS+TK+M Y++
Sbjct: 17 LAVSGFLVSPNIAQAAEAPTVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 76
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + K +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 77 LEAINDGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+F MN ++ L L F+NA G+ + + TAR
Sbjct: 137 AISEKIAGSEKEFXAMMNKKAEELKLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P+ + E + N NW + G DG+KTG
Sbjct: 197 GMAKLAKHLIDDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 256
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 257 TTDYAGMCLTATAVQDGMRVITVVLHANGGGEGEHTSARFDETNKMLDYSFNNFKVKEVQ 316
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V ++ K K ++ +
Sbjct: 317 KAGAKVKDPSTIEVDKGKEDTVGLVTKDEVKLVVP-KNGNEPKLTTKVTLKDKTLEAPVK 375
Query: 325 KITLLKN 331
K T +
Sbjct: 376 KNTEVGE 382
>gi|323136415|ref|ZP_08071497.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC
49242]
gi|322398489|gb|EFY01009.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylocystis sp. ATCC
49242]
Length = 592
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 85/232 (36%), Positives = 134/232 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D N+G + +PAS+TK+MT Y++F L++ K L +P+ IS +A+
Sbjct: 90 AAIVVDGNSGKTLYARNEHELRHPASVTKVMTLYLLFEQLEKGKLRLDSPLMISSHAAAQ 149
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
PS + G T++++NA+K ++ KSANDIA AIAE++ E F Q M + LG+
Sbjct: 150 APSKLGLRPGETISVENAIKAVVTKSANDIACAIAENIGGDEHTFAQMMTRKAHALGMRN 209
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
TH+ NA G+ G TTA D+A+L I+ FP+Y YF G + N N +G
Sbjct: 210 THYENASGLPDPGQITTAYDLAVLGRAIQDRFPRYYRYFSTHSFAYNGALHRNHNHLLGQ 269
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
G DG+KTG+T ASGFN++ S +G+ ++AV++G R+++ A L+
Sbjct: 270 VEGMDGIKTGYTRASGFNLLTSVRRGNHHIVAVVMGGATAGGRDRIMAGLIE 321
>gi|168215748|ref|ZP_02641373.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC
8239]
gi|182382096|gb|EDT79575.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens NCTC
8239]
Length = 444
Score = 166 bits (420), Expect = 3e-39, Method: Composition-based stats.
Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 17/329 (5%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
I ++ + +N+F ++ K L+D TG V+AE + PAS TK MTA +
Sbjct: 20 FIFSLILSTNVFAESNV-PEIKGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 78
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
L +TI KN + ++G T++ L L+++SAND AVA+AE
Sbjct: 79 VEKA-----NLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW-----RIKTD 180
+ +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I +
Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDE 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ Y K + + N N KTG+T S +A +
Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKR 253
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
GD+ LI +LG ++ + + +LL GF N + K + ++
Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + + + K++ IDF
Sbjct: 314 PEDIYKTFKNSEIENLSTDEIKKNLNIDF 342
>gi|205371955|ref|ZP_03224774.1| D-alanine carboxypeptidase [Bacillus coahuilensis m4-4]
Length = 453
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 127/366 (34%), Gaps = 47/366 (12%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ S L++ TG ++ E + AS+TK+MT +++ + E +
Sbjct: 25 APSVAEASDPLNINADAAILVEAETGKILYEKNSETALGVASMTKMMTEFLLLEAISEGR 84
Query: 74 AMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+++S N K S ++ + + + SAN + IAE+L
Sbjct: 85 VSFDQMVSVSDYGHRISQDTSLSNVPLKLDSQYSIKELYESMAIYSANGATITIAEALAG 144
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYTTARDMAILSW 175
+E FV+ MN + LGL F+N+ G+ + +A D A L++
Sbjct: 145 SETNFVKMMNEKAAELGLENYKFVNSTGLNNADLLGQHPQGTGETEENVMSANDTATLAY 204
Query: 176 RIKTDFPQYMHYFQIKGLEIK------GKKYPNTNWA----VGTFLGADGMKTGFTCASG 225
+ T +P+ + I L + N NW V + G DG+KTG T +G
Sbjct: 205 ELLTRYPEVLETASIPKLTFREGIADEQTNMDNWNWMLPSLVYGYEGMDGLKTGTTDFAG 264
Query: 226 FNIVASAIQGDQSLIAVILGAL------DRNTRNKVSASLLSMGFYNKTDRKKINYIIK- 278
+ +A + D I V++ A R + + +L F N + + + K
Sbjct: 265 ASFTGTAKRNDMRFITVVMNAKNASGTSTYQARFEETKKMLDYAFANYSVEEIVPAGFKL 324
Query: 279 ------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES------HFIDFEKI 326
+ + + + K + ++ E
Sbjct: 325 NDQETMPVVKGKEDSVGISSESALTAVVKNGEKEMYSPVFTEASDTLTEDGELTAPVEAG 384
Query: 327 TLLKNK 332
++
Sbjct: 385 DVVGTL 390
>gi|18311103|ref|NP_563037.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
13]
gi|18145786|dbj|BAB81827.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
13]
Length = 444
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 17/329 (5%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
I ++ + +N+F ++ K L+D TG V+AE + PAS TK MTA +
Sbjct: 20 FIFSLILSTNVFAESNV-PEIKGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 78
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
L +TI KN + ++G T++ L L+++SAND AVA+AE
Sbjct: 79 VEKA-----NLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW-----RIKTD 180
+ +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I +
Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDE 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ Y K + + N N KTG+T S +A +
Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKR 253
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
GD+ LI +LG ++ + + +LL GF N + K + ++
Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + + + K++ IDF
Sbjct: 314 PEDIYKTFKNSEIENLSTDEIKKNLNIDF 342
>gi|307708560|ref|ZP_07645025.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis NCTC
12261]
gi|307615476|gb|EFN94684.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus mitis NCTC
12261]
Length = 413
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 69/367 (18%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++ +++++++ + + + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIILTLLSLSVIGSASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYKLTTNSEASNVPMEARNYTVEQLLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+++ ++ + ++ D ++ E T+
Sbjct: 301 KGDAYQDSKAPVQDGKEDTVTAIAKDDISLIERVGGQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|222149991|ref|YP_002550948.1| penicillin-binding protein [Agrobacterium vitis S4]
gi|221736973|gb|ACM37936.1| penicillin-binding protein [Agrobacterium vitis S4]
Length = 366
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 114/294 (38%), Positives = 171/294 (58%), Gaps = 1/294 (0%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
++D N+ V+ W PASLTKLMTAY F L+ + L + +T+
Sbjct: 21 PSAVAANPVLVVDVNSLTVLEHQDSFKKWYPASLTKLMTAYTTFRALRAGEVRLDSVVTL 80
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S A+ PS FK GS MTLD+ALK+++VKSANDIAVA+AE++ ++ FV MN +
Sbjct: 81 SAFAASQAPSKMFFKPGSKMTLDDALKMMLVKSANDIAVAVAENVGGSQAAFVARMNAEA 140
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
LG++++HF+N +G+ G Y+TARD+A+L+ I+ +FP+Y YF+I+ ++ K YPN
Sbjct: 141 ARLGMTSSHFVNPNGLPAPGQYSTARDLAVLAVTIRREFPEYAGYFKIEAIDTGKKVYPN 200
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N VG F G DGMKTG+ CASGFN + SA + ++LI V++GA R +SA+LL
Sbjct: 201 VNMLVGRFDGVDGMKTGYICASGFNQITSATRNGRTLITVVMGADSLAARADISANLLQK 260
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
F + + L N V ++S E+C+T+ T+ + + K
Sbjct: 261 YFDRPNAQGSRLSALGPDSVDGL-NAVNDVSAEMCSTEARKRRSETRDETGRMK 313
>gi|217418923|ref|ZP_03450430.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
576]
gi|226198000|ref|ZP_03793572.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pakistan 9]
gi|217398227|gb|EEC38242.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
576]
gi|225929876|gb|EEH25891.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pakistan 9]
Length = 333
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 13/276 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ + ++ A + ++D ++G + + D PASLTK
Sbjct: 27 RLFAALFVSAACAAPNGARAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTK 86
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKS 115
LMTAYV F L+ +T++ + G + + + ++ LIV S
Sbjct: 87 LMTAYVAFDALERAALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVAS 146
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+ +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+
Sbjct: 147 ANDAALVLAKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQ 206
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-- 233
R+ DFP + + + N N +G DGMKTG T A+G+ +V +A
Sbjct: 207 RLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRP 266
Query: 234 ----QGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ +IAV+LG R + +LL GF
Sbjct: 267 VGGARARHRVIAVLLGEPTEKQRLADARALLDQGFA 302
>gi|167723745|ref|ZP_02406981.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98]
Length = 318
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 13/276 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ + ++ A + ++D ++G + + D PASLTK
Sbjct: 27 RLFAALFVSAACAAPNGARAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTK 86
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKS 115
LMTAYV F L+ +T++ + G + + + ++ LIV S
Sbjct: 87 LMTAYVAFDALERAALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVAS 146
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+ +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+
Sbjct: 147 ANDAALVLAKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQ 206
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-- 233
R+ DFP + + + N N +G DGMKTG T A+G+ +V +A
Sbjct: 207 RLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRP 266
Query: 234 ----QGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ +IAV+LG R + +LL GF
Sbjct: 267 VGGARARHRVIAVLLGEPTEKQRLADARALLDQGFA 302
>gi|126444942|ref|YP_001062743.1| peptidase [Burkholderia pseudomallei 668]
gi|134283712|ref|ZP_01770410.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 305]
gi|167906685|ref|ZP_02493890.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei NCTC 13177]
gi|237510538|ref|ZP_04523253.1| family S11 unassigned peptidase [Burkholderia pseudomallei MSHR346]
gi|126224433|gb|ABN87938.1| family S11 unassigned peptidase [Burkholderia pseudomallei 668]
gi|134244894|gb|EBA44990.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 305]
gi|235002743|gb|EEP52167.1| family S11 unassigned peptidase [Burkholderia pseudomallei MSHR346]
Length = 333
Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats.
Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 13/276 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ + ++ A + ++D ++G + + D PASLTK
Sbjct: 27 RLFAALFVSAACAAPNGARAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTK 86
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKS 115
LMTAYV F L+ +T++ + G + + + ++ LIV S
Sbjct: 87 LMTAYVAFDALERAALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVAS 146
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+ +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+
Sbjct: 147 ANDAALVLAKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQ 206
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-- 233
R+ DFP + + + N N +G DGMKTG T A+G+ +V +A
Sbjct: 207 RLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRP 266
Query: 234 ----QGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ +IAV+LG R + +LL GF
Sbjct: 267 VGGARARHRVIAVLLGEPTEKQRLADARALLDQGFA 302
>gi|333006637|gb|EGK26136.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
flexneri VA-6]
Length = 269
Score = 166 bits (419), Expect = 4e-39, Method: Composition-based stats.
Identities = 86/251 (34%), Positives = 130/251 (51%), Gaps = 7/251 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
LK K LT +T+ K+A S K G +++ + K +I++S ND
Sbjct: 77 GQVLKADKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDA 136
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 137 CIALADYVAGSQESFIGLMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIH 196
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P+ + K + PN N + L DGMKTG T +G+N+VASA QGD
Sbjct: 197 DVPEEYAIHKEKEFTFNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMR 256
Query: 239 LIAVILGALDR 249
LI+V+LGA
Sbjct: 257 LISVVLGAKTE 267
>gi|209549400|ref|YP_002281317.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209535156|gb|ACI55091.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 431
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 74/345 (21%), Positives = 135/345 (39%), Gaps = 13/345 (3%)
Query: 1 MRQFLVIIAMAML-----SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+R F I +L + + K +++ TG V+ D ++PAS
Sbjct: 35 LRTFAGIALACLLPLTTGALAADSGAAGFATKAAQAYMIEAATGTVLLAKNEDQGFSPAS 94
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKL 110
L KLMT +VF + + + T +S+ A + S + +++ +K
Sbjct: 95 LAKLMTMDLVFDAVTKGQITFDTEYPVSEYAWRTGGAPSRTATMFASLKSRVRVEDLIKG 154
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++ AND + +AE + +E++F + M ++ LG+ F N+ G+ TAR+M
Sbjct: 155 VAIQGANDSCIILAEGMAGSEQQFAESMTRRARELGMEKAEFGNSTGLPDGKSKVTAREM 214
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L+ ++ +P YF E N N +G LGADG+ TGFT G++IVA
Sbjct: 215 VTLATALQKSYPNLYPYFAQPDFEWNKIFQRNRNPLLGLDLGADGLATGFTEGEGYSIVA 274
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSN 287
S + + L + G R + + +L G R+ I +
Sbjct: 275 SVERDGRRLFLALAGVASDKERTEEAKRVLEWGLTAFESRQIFAENEVIGAASVYGGTAR 334
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
V +++ + I N + + + T
Sbjct: 335 TVDLVAKAPVSVYIPISNPDRLSARIIYRWPLAAPVQPDTQAGTL 379
>gi|146341457|ref|YP_001206505.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
ORS278]
gi|146194263|emb|CAL78285.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase
S11)(DD-carboxypeptidase) [Bradyrhizobium sp. ORS278]
Length = 586
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 94/304 (30%), Positives = 153/304 (50%), Gaps = 4/304 (1%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
++D N+G + PD +PASLTK+MT Y++F L K L T + +S++A
Sbjct: 56 PAFASIVVDGNSGATLTATNPDALRHPASLTKIMTLYLLFERLDSGKMKLDTEMPVSEHA 115
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
SE P+ + G T+ +++A+K L+ +SAND AV IAE++ E +F + M +++LG
Sbjct: 116 SEQSPTKLGLRPGQTIRVEDAIKGLVTRSANDAAVVIAEAIGGDEDEFAKMMTRKARSLG 175
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+S T ++NA G+ TTARD +IL I+ FP+Y YF +G+ N N
Sbjct: 176 MSRTTYVNASGLPADEQITTARDQSILGRAIQDRFPRYYRYFSTVVFNYRGQSIRNHNHL 235
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL----LSM 262
+G G DG+KTG+T ASGFNIV S +G++ L+ V+LG +R+ + +L L
Sbjct: 236 LGNVEGIDGIKTGYTRASGFNIVTSLRRGNRHLVGVVLGGRSGGSRDAIMRNLLAENLEK 295
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
G +T D + ++ + + E + +T +
Sbjct: 296 GATKRTVAAVGERGNSDAGDDQSTVQLASAAPETPAPSRAAKFISTLSEATAALPPAAPK 355
Query: 323 FEKI 326
K+
Sbjct: 356 EAKV 359
>gi|225861235|ref|YP_002742744.1| penicillin-binding protein 3 [Streptococcus pneumoniae
Taiwan19F-14]
gi|298255726|ref|ZP_06979312.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298503122|ref|YP_003725062.1| serine family D-Ala-D-Ala carboxypeptidase [Streptococcus
pneumoniae TCH8431/19A]
gi|38142303|dbj|BAD00954.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142335|dbj|BAD00970.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142337|dbj|BAD00971.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142341|dbj|BAD00973.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142353|dbj|BAD00979.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|225727841|gb|ACO23692.1| penicillin-binding protein 3 [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238717|gb|ADI69848.1| serine family D-Ala-D-Ala carboxypeptidase [Streptococcus
pneumoniae TCH8431/19A]
Length = 413
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAISAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|167742710|ref|ZP_02415484.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 14]
gi|167849724|ref|ZP_02475232.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei B7210]
Length = 310
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 76/271 (28%), Positives = 127/271 (46%), Gaps = 9/271 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
V A A + + A + + ++D ++G + + D PASLTKLMTAY
Sbjct: 32 LFVSAACAAPNGARAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTKLMTAY 91
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIA 120
V F L+ +T++ + G + + + ++ LIV SAND A
Sbjct: 92 VAFDALERDALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVASANDAA 151
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+ +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+ R+ D
Sbjct: 152 LVLAKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRD 211
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI------Q 234
FP + + + N N +G DGMKTG T A+G+ +V +A +
Sbjct: 212 FPAFYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGAR 271
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+IAV+LG R + +LL GF
Sbjct: 272 ARHRVIAVLLGEPTEKQRLADARALLDQGFA 302
>gi|289436027|ref|YP_003465899.1| hypothetical protein lse_2666 [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289172271|emb|CBH28817.1| unnamed protein product [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 445
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 78/367 (21%), Positives = 142/367 (38%), Gaps = 42/367 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A T ++ +TG ++ D AS+TK+M Y++
Sbjct: 17 LAVSGFLVSPNIAQAAEAPTVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 76
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + K +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 77 LEAINDGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 136
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN ++ L L F+NA G+ + + TAR
Sbjct: 137 AISEKIAGSEKEFVAMMNKKAEELKLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW----AVGTFLGADGMKTG 219
MA L+ + D+P+ + E + N NW + G DG+KTG
Sbjct: 197 GMAKLAKHLIDDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTG 256
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G + A+A+Q +I V+L A + R + +L F N ++
Sbjct: 257 TTDYAGMCLTATAVQDGMRVITVVLHANGGGEGEHTSARFDETNKMLDYSFNNFKVKEVQ 316
Query: 274 NYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
K D +++ V ++ K K ++ +
Sbjct: 317 KAGAKVKDPSTIAVDKGKEDTVGLVTKDEVKLVVP-KNGNEPKLTTKVTLKDKTLEAPVK 375
Query: 325 KITLLKN 331
K T +
Sbjct: 376 KNTEVGE 382
>gi|332073203|gb|EGI83682.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
GA17570]
Length = 413
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTTTSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|306843463|ref|ZP_07476064.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1]
gi|306276154|gb|EFM57854.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1]
Length = 370
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 117/341 (34%), Positives = 191/341 (56%), Gaps = 11/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I A+ + A +D TG V + W PASLTK+M
Sbjct: 1 MSKSLRIWFAAVAFSGIALSGAA----ANPSIAVDVATGKVYEQQDAFQRWYPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 57 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ +
Sbjct: 117 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 176
Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 177 FPQYAHYFATEAIDPGAGKKVQANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 236
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+
Sbjct: 237 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAETANLNQAV-DMRKAICS 295
Query: 299 TQKEIINYNTQMKEAKDK----ESHFIDFEKITLLKNKITK 335
Q ++ + E + K H +D + I + +++
Sbjct: 296 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 336
>gi|325661133|ref|ZP_08149760.1| hypothetical protein HMPREF0490_00493 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472640|gb|EGC75851.1| hypothetical protein HMPREF0490_00493 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 404
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 77/363 (21%), Positives = 135/363 (37%), Gaps = 36/363 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ L+ I +L P + E L+D + G V+ E AS TK
Sbjct: 3 MKKVLIGILTGVLLVSSPVSAKEEIEQLYAQSAVLMDADNGRVLFEKNGSEKKPMASTTK 62
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + LT + +S+NA+ P + + L + L L+++S ND
Sbjct: 63 IMTCILALEE-----GNLTDVVNVSENAARQPKVHLGMQMDEKFYLRDLLYSLMLESHND 117
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILS 174
AVAIAE + + + F MN +K +G T+F+ +G+ H TTA D+A +
Sbjct: 118 SAVAIAEHIGGSVQAFADKMNAKAKEIGCRDTYFITPNGLDASDDKGEHSTTAEDLARIM 177
Query: 175 WRIKTDFPQYMHYFQIKG---------LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
P+ + I + N N + GA KTGFT +G
Sbjct: 178 SYCILKSPKKESFLSITQKGSYHFMDVDCHRSFSCQNHNAFLTMMDGALSGKTGFTGKAG 237
Query: 226 FNIVASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRKKI--NYIIKDF 280
+ V + ++ + +LG N + + L++ G N R+ ++D
Sbjct: 238 YCYVGALESRGRTFVVALLGCGWPNNKGYKWADTRRLMTYGMENYELREAFSGKEPLRDV 297
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMK-----------EAKDKESHFIDFEKITLL 329
+ N+ E+ K N+ ++ + +E E+ L
Sbjct: 298 TVKAGIPTSGNLFEKAHVPVKIEKIQNSPVEVLLHREEEIETVVELQEEVQAPIERYEKL 357
Query: 330 KNK 332
Sbjct: 358 GTV 360
>gi|38142331|dbj|BAD00968.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
Length = 413
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAISAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|329930179|ref|ZP_08283792.1| D-alanyl-D-alanine carboxypeptidase DacA [Paenibacillus sp. HGF5]
gi|328935201|gb|EGG31682.1| D-alanyl-D-alanine carboxypeptidase DacA [Paenibacillus sp. HGF5]
Length = 472
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 80/340 (23%), Positives = 139/340 (40%), Gaps = 34/340 (10%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
++ L++ +TG V+ D PAS+TK+MT Y+V +K+ + +T+ +N
Sbjct: 79 LEVSSAVLIEPSTGQVLLSINADEALPPASMTKMMTEYIVAEKVKQGELAWDDVVTVGEN 138
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A + S +G T++ + V SAND VA+AE + +E +FV MN+T+K +
Sbjct: 139 AEKTVGSRIFLAEGDQHTVEELYIAMAVGSANDATVALAEHIAGSEAEFVTMMNDTAKKM 198
Query: 146 GLSATHFMNAHGVV------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
GL F+N+ G+ +A D A+L+ I D P + + I+
Sbjct: 199 GLKTAFFINSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKYIVEDHPDFARFTAIQSH 258
Query: 194 EIKGK---KYPNTNWA-----------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N NW + G DG+KTG T A+G+ +A + L
Sbjct: 259 KFRPRDTSPIINYNWMLEANKSITNFKAYAYEGLDGLKTGHTNAAGYCFAGTAERDGMRL 318
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
I+V++G R K + +L GF N ++ + + + E T
Sbjct: 319 ISVVMGTKSEGARFKETKKVLDYGFDNFEVKEVQAAGATVQGFETVEVKKGKGKEAGLVT 378
Query: 300 QKEIINYNTQMKEAKDK--------ESHFIDFEKITLLKN 331
K + + K+ S K T +
Sbjct: 379 DKALTFVVPKGSSGKNITFEAKLDSSSVTAPVAKDTKVGT 418
>gi|261403951|ref|YP_003240192.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp.
Y412MC10]
gi|261280414|gb|ACX62385.1| Serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp.
Y412MC10]
Length = 472
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 80/340 (23%), Positives = 139/340 (40%), Gaps = 34/340 (10%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
++ L++ +TG V+ D PAS+TK+MT Y+V +K+ + +T+ +N
Sbjct: 79 LEVSSAVLIEPSTGQVLLSINADEALPPASMTKMMTEYIVAEKVKQGELAWDDVVTVGEN 138
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A + S +G T++ + V SAND VA+AE + +E +FV MN+T+K +
Sbjct: 139 AEKTVGSRIFLAEGDQHTVEELYIAMAVGSANDATVALAEHVAGSEAEFVTMMNDTAKKM 198
Query: 146 GLSATHFMNAHGVV------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
GL F+N+ G+ +A D A+L+ I D P + + I+
Sbjct: 199 GLKTAFFINSTGLSRADMPEKYRPAEDKETVMSAMDTALLAKYIVEDHPDFAKFTAIQSH 258
Query: 194 EIKGK---KYPNTNWA-----------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N NW + G DG+KTG T A+G+ +A + L
Sbjct: 259 KFRPRDTSPIINYNWMLEANKSITNFKAYAYEGLDGLKTGHTNAAGYCFAGTAERDGMRL 318
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
I+V++G R K + +L GF N ++ + + + E T
Sbjct: 319 ISVVMGTKSEGARFKETKKVLDYGFDNFEVKEVQAAGATVQGFETVEVKKGKGKEAGLVT 378
Query: 300 QKEIINYNTQMKEAKDK--------ESHFIDFEKITLLKN 331
K + + K+ S K T +
Sbjct: 379 DKALTFVVPKGSSGKNITFEAKLDSSSVTAPVAKDTKVGT 418
>gi|76818571|ref|YP_335397.1| peptidase [Burkholderia pseudomallei 1710b]
gi|126456879|ref|YP_001075694.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106a]
gi|242313141|ref|ZP_04812158.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106b]
gi|254265595|ref|ZP_04956460.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1710a]
gi|76583044|gb|ABA52518.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b]
gi|126230647|gb|ABN94060.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106a]
gi|242136380|gb|EES22783.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106b]
gi|254216597|gb|EET05982.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1710a]
Length = 333
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 76/271 (28%), Positives = 127/271 (46%), Gaps = 9/271 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
V A A + + A + + ++D ++G + + D PASLTKLMTAY
Sbjct: 32 LFVSAACAAPNGARAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTKLMTAY 91
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIA 120
V F L+ +T++ + G + + + ++ LIV SAND A
Sbjct: 92 VAFDALERDALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVASANDAA 151
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+ +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+ R+ D
Sbjct: 152 LVLAKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQRLNRD 211
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI------Q 234
FP + + + N N +G DGMKTG T A+G+ +V +A +
Sbjct: 212 FPAFYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKRPVGGAR 271
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+IAV+LG R + +LL GF
Sbjct: 272 ARHRVIAVLLGEPTEKQRLADARALLDQGFA 302
>gi|222148621|ref|YP_002549578.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
[Agrobacterium vitis S4]
gi|221735607|gb|ACM36570.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
[Agrobacterium vitis S4]
Length = 484
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 88/261 (33%), Positives = 137/261 (52%), Gaps = 4/261 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKL 59
MR V + +A++ + Y ++D N G V+ D PASLTK+
Sbjct: 17 MR---VSLTVALVCATLVAPAPEAAAASRYADIVVDVNNGKVLRATDADSLRYPASLTKM 73
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT Y+VF L++ + L + + +S +A+ PPS + G + T++ ++ L+ +SAND
Sbjct: 74 MTLYLVFEALEKGRIRLNSSVPVSAHAASEPPSKLGLRPGGSFTVEQGIQALVTRSANDA 133
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A A E L +E +F Q M + ++ LG+S T + NA+G+ G TTARD A L ++
Sbjct: 134 ATAFGEYLGGSEARFAQMMTSKARALGMSRTTYRNANGLPNSGQMTTARDQARLGMALRQ 193
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
FPQY YF + + N N +G+ G DG+KTGFT ASGFN+V S +S+
Sbjct: 194 HFPQYYAYFSTRSFTYGRQVIGNHNRLIGSVRGVDGIKTGFTNASGFNLVTSLQIDGKSV 253
Query: 240 IAVILGALDRNTRNKVSASLL 260
+ V+LG R+ L+
Sbjct: 254 VGVVLGGASGAARDNQMRKLM 274
>gi|315613037|ref|ZP_07887948.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
ATCC 49296]
gi|315315147|gb|EFU63188.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
ATCC 49296]
Length = 413
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 67/366 (18%), Positives = 141/366 (38%), Gaps = 32/366 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++ + + + + + ++ TG ++ E + P AS+TKL
Sbjct: 1 MKKIILSFMTLFVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L + L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 VTVYLVYEALDQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNYTVEQLLEATMVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + D+PQ + + G + +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R +++LL N + +
Sbjct: 241 GTTDKAGASFVGTTVEKGMRIITVVLNADQQDTNPYARFTATSALLDYISANFALKTVVQ 300
Query: 275 YI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + ++ Q+ ++ S E+ +
Sbjct: 301 KGEAYNDSKVTVLDGKEDSVIAVAKSDISIVQRIGSGTTPVLQFTPKSTSEMAPLEEGKV 360
Query: 329 LKNKIT 334
+
Sbjct: 361 VGTLTY 366
>gi|170740496|ref|YP_001769151.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
4-46]
gi|168194770|gb|ACA16717.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium sp.
4-46]
Length = 503
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 96/325 (29%), Positives = 157/325 (48%), Gaps = 11/325 (3%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-----------YYTLLDTNTGHVIAENYPDHP 50
R +IA A + + A ++D +G V+ D
Sbjct: 10 RSLPALIAAAAVLTAMTHPADARRRGHHHGGGGGYNPPFAAMVVDVKSGRVLHAVNEDAL 69
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+PAS+TK+MT Y++F L+ K L TP+ IS NA+ PS + GST+T++ A+K
Sbjct: 70 RHPASITKVMTLYLLFEQLERGKMSLDTPLEISANAARQAPSKLGLRPGSTITVEEAIKA 129
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
L+ KSAND+A AI E++ +E F + M + LG+S TH+ NA G+ TTARD+
Sbjct: 130 LVTKSANDVACAIGENIAGSEGAFAEMMTRKAHALGMSRTHYANASGLPDSDQITTARDL 189
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+L+ I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++
Sbjct: 190 TVLARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNHLLGRVEGVDGIKTGYTRDSGFNLMT 249
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
SA D+ ++AV+LG +R+ + L+ + + + +++ V
Sbjct: 250 SARLADRHIVAVVLGGKSVASRDAIMTRLVQGNLPKAYAGARTTPPVTELAERSRPAVVA 309
Query: 291 NISEEVCTTQKEIINYNTQMKEAKD 315
S T + + ++
Sbjct: 310 ERSATTRTLVAAADDDDEGVETTNS 334
>gi|110800833|ref|YP_696799.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC
13124]
gi|168208823|ref|ZP_02634448.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str.
ATCC 3626]
gi|110675480|gb|ABG84467.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens ATCC
13124]
gi|170713162|gb|EDT25344.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens B str.
ATCC 3626]
Length = 444
Score = 166 bits (419), Expect = 5e-39, Method: Composition-based stats.
Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 17/329 (5%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
I ++ + +N+F ++ K L+D TG V+AE + PAS TK MTA +
Sbjct: 20 FIFSLILSTNVFAESNV-PEIKGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 78
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
L +TI KN + ++G T++ L L+++SAND AVA+AE
Sbjct: 79 VEKA-----NLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW-----RIKTD 180
+ +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I +
Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNVASKNPIIDE 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ Y K + + N N KTG+T S +A +
Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKR 253
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
GD+ LI +LG ++ + + +LL GF N + K + ++
Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + + + K++ IDF
Sbjct: 314 PEDIYKTFKNSEIENLSTDEIKKNLNIDF 342
>gi|229000174|ref|ZP_04159743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
gi|228759506|gb|EEM08483.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
Length = 426
Score = 166 bits (419), Expect = 6e-39, Method: Composition-based stats.
Identities = 86/374 (22%), Positives = 141/374 (37%), Gaps = 39/374 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET-----NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR+ L I+ + +LS ++I+ + L D +TG ++ E PD AS
Sbjct: 3 MRKILSILLVFLLSFSSLGVTISHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAIAS 62
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KL+ Y V +KE K T + IS A E +N +K L
Sbjct: 63 MSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGRQYTVKELYHSI 122
Query: 116 ANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
A + +L + +EK F+ N +K LGL F+NA G+
Sbjct: 123 IIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 182
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA----VG 208
+ +ARDM ILS I T +P+ + + + K + N NW
Sbjct: 183 DPNGENSLSARDMGILSKTIITKYPEILEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 242
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G DG+KTG + +G+ SA +GD LI+VI+ + R S L+ GF N
Sbjct: 243 AYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNNFE 302
Query: 269 DRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-----SHFI 321
+K + +E+ K+ + DK
Sbjct: 303 KQKLKIDKNNTISVVKGTEDTVTVKPEKEITVITKKGSKPPYTISTEADKSLSQDGKVVA 362
Query: 322 DFEKITLLKNKITK 335
+K + + + +
Sbjct: 363 PIKKDAKVGSLVLE 376
>gi|148981388|ref|ZP_01816384.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3]
gi|145960880|gb|EDK26210.1| D-alanyl-D-alanine carboxypeptidase [Vibrionales bacterium SWAT-3]
Length = 278
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 81/263 (30%), Positives = 133/263 (50%), Gaps = 7/263 (2%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + ++ F + A + L+D ++G V+AE + +PASLTK+MT+
Sbjct: 16 VALSATIATSSFAAPIVVPDAPQIAAKGFVLMDYHSGKVLAEKEMNTQLSPASLTKMMTS 75
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV+ L+ L + IS+NA S + G+T+ ++ + +I++S ND
Sbjct: 76 YVIGQELERGNINLNDDVVISENAWAKNFPDSSKMFVEVGTTVKVEELNRGIIIQSGNDA 135
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VA+AE + +E FV MN + ++G+ THF N HG+ Y+T DMA+L +
Sbjct: 136 CVAMAEHIAGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIR 195
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
D P + K G N N + DG+KTG T +G+++V+SA +G
Sbjct: 196 DVPDEYRIYSQKKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSNAGYSLVSSATEGKMR 255
Query: 239 LIAVILGALDRNTRNKVSASLLS 261
L+AV++G + N R S LLS
Sbjct: 256 LVAVVMGTKNANARKTESKKLLS 278
>gi|182624061|ref|ZP_02951849.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str.
JGS1721]
gi|177910954|gb|EDT73308.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens D str.
JGS1721]
Length = 444
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 17/329 (5%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
I ++ + +N+F ++ K L+D TG V+AE + PAS TK MTA +
Sbjct: 20 FIFSLILSTNVFAESNV-PEIKGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 78
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
L +TI KN + ++G T++ L L+++SAND AVA+AE
Sbjct: 79 VEKA-----NLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW-----RIKTD 180
+ +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I +
Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDE 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ Y K + + N N KTG+T S +A +
Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKR 253
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
GD+ LI +LG ++ + + +LL GF N + K + ++
Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + + + K++ IDF
Sbjct: 314 PEDIYKTFKNSEIENLSTDEIKKNLNIDF 342
>gi|229007696|ref|ZP_04165288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
gi|228753564|gb|EEM03010.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
Length = 426
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 85/374 (22%), Positives = 140/374 (37%), Gaps = 39/374 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET-----NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR+ L I+ + +LS ++ + + L D +TG ++ E PD AS
Sbjct: 3 MRKILSILLVFLLSFSSLGVTTSHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAIAS 62
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KL+ Y V +KE K T + IS A E +N +K L
Sbjct: 63 MSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEISRNNEFSNVPFEKGRQYTVKELYHSI 122
Query: 116 ANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
A + +L + +EK F+ N +K LGL F+NA G+
Sbjct: 123 IIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 182
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA----VG 208
+ +ARDM ILS I T +P+ + + + K + N NW
Sbjct: 183 DPNGENSLSARDMGILSKTIITKYPEILEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 242
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G DG+KTG + +G+ SA +GD LI+VI+ + R S L+ GF N
Sbjct: 243 AYEGTDGLKTGSSDTAGYGFTISAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNNFE 302
Query: 269 DRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-----SHFI 321
+K + +E+ K+ + DK
Sbjct: 303 KQKLKIDKNNTISVVKGTEDTVTVKPEKEITVITKKGSKPPYTISTEADKSLSQDGKVVA 362
Query: 322 DFEKITLLKNKITK 335
+K + + + +
Sbjct: 363 PIKKDAKVGSLVLE 376
>gi|38142281|dbj|BAD00943.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142299|dbj|BAD00952.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142351|dbj|BAD00978.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
Length = 413
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGCASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIEQIGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|182419858|ref|ZP_02951098.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
gi|237666495|ref|ZP_04526480.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182376406|gb|EDT73988.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
gi|237657694|gb|EEP55249.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 413
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 75/339 (22%), Positives = 128/339 (37%), Gaps = 22/339 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M+++ ++M +L P A L+D ++G ++ D + PAS
Sbjct: 1 MKRYFKFLSMLLLFLCIPLTVHAETAKPEINAQGCALIDASSGTILYGKNEDCTFEPAST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA V K LT +TI +N + + KG +T+ + L L+++S
Sbjct: 61 TKVMTALVALDKCK-----LTDEVTIQENFTSVDGTAIGLLKGDVVTVHDLLLGLLMESG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A +A + + F Q MN +K LG +AT F N G+ H TT D+A+
Sbjct: 116 NDCANELAYHVSGSIDSFAQLMNEKAKELGATATSFRNPSGLPDPEHLTTPHDLALFLRE 175
Query: 177 IKTDF------PQYMHYFQIKGLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASG 225
+ + + N N+ + A K G+T +
Sbjct: 176 AIKNQDFLDIAQTPYATITMINNPERTIIINNKNYMINKNSKYYYKYALCGKNGYTTKAN 235
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285
V+SA + LIA L A+D+N S+ + GF N + K + +
Sbjct: 236 HTYVSSAEKDGHILIASFLNAMDKNQNFFDMQSVFNYGFDNYSFVKLYDKGQEVAQYDVT 295
Query: 286 SN--EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
N I++ + + + + E
Sbjct: 296 KNLTVPLLINKTLEYPVLKGDESSLSFDIKVNDEDLSKK 334
>gi|163868095|ref|YP_001609299.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
gi|161017746|emb|CAK01304.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
Length = 449
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 91/292 (31%), Positives = 145/292 (49%), Gaps = 1/292 (0%)
Query: 2 RQFLVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
++ + M + S + F ++D TG + + PASLTK+M
Sbjct: 13 KKIAISFIMLVSSYCWAFATPQGAYPDKYAAIVIDATTGKTLFQANATLKRYPASLTKMM 72
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y++F ++ ++ TPI +S A+ PP+ FK G T++ + A K LI +SAND+A
Sbjct: 73 TLYLLFEAMQMRRVTPNTPIPVSHYAAMRPPTKIGFKAGQTISAEAAAKALITRSANDVA 132
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
AIAE L +EK F + M ++ LG+ THF NA G+ +Y+TARD+A LS ++
Sbjct: 133 TAIAEYLGGSEKNFARMMTAKARKLGMKHTHFANASGLPDVQNYSTARDIATLSLALRQH 192
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F+ K +G + N V G DG+KTG+T SG N+ S +S++
Sbjct: 193 FPKQYKLFKTKSFNFRGHTINSHNKLVKVMKGVDGIKTGYTQMSGSNLATSMRLEGRSVV 252
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
AV++G R++ ASLL+ K ++ + Q + I
Sbjct: 253 AVVMGGKSSTARDEHMASLLNQYLPKANQMKSGERLMASVHYQLPTGAKTPI 304
>gi|49475404|ref|YP_033445.1| penicillin-binding protein [Bartonella henselae str. Houston-1]
gi|49238210|emb|CAF27420.1| Penicillin-binding protein [Bartonella henselae str. Houston-1]
Length = 449
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 97/261 (37%), Positives = 140/261 (53%), Gaps = 1/261 (0%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
++ + + LS + F + E ++D NTG + + PASLTK+M
Sbjct: 13 KKIAIAFVVLALSYSWAFATPQEAYPDKYAAIVIDANTGKTLFQANATLKRYPASLTKMM 72
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y++F + ++ TPI +S+NA+ PP+ K G T++ A K LI +SAND+A
Sbjct: 73 TLYLLFEAMHMRRVTPNTPILVSRNAATRPPTKLGLKTGQTISAQEAAKALITRSANDVA 132
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
AIAE L EKKF + M ++ LG+ THF NA G+ +Y+TARDMA LS ++
Sbjct: 133 TAIAEYLGGNEKKFARMMTAKARKLGMINTHFANASGLPDVRNYSTARDMATLSLALRKH 192
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQ F+IK G N V T G DG+KTG+T SG N+ S +S++
Sbjct: 193 FPQQYKLFKIKSFIFHGHTVNTHNKLVKTMKGVDGIKTGYTQMSGSNLATSMRIEGRSIV 252
Query: 241 AVILGALDRNTRNKVSASLLS 261
AV++G R+K ASLLS
Sbjct: 253 AVVMGGKSSTARDKHMASLLS 273
>gi|38142295|dbj|BAD00950.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
Length = 413
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDYKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|86356590|ref|YP_468482.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
gi|86280692|gb|ABC89755.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
Length = 419
Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats.
Identities = 90/290 (31%), Positives = 142/290 (48%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++ + +LD TG V+A D +PASLTK+MT Y+ F LK
Sbjct: 1 MTVTLAVSAPLAALAGSASLILDARTGKVLASENADTLNHPASLTKMMTLYLTFEALKRG 60
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A A+AE+L +E
Sbjct: 61 KIAWDTPIKMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAETLGGSES 120
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F + M ++ LG+S T F+NA G+ TTARDM+ L + +FP F +
Sbjct: 121 GFARMMTAKARQLGMSRTVFVNASGLPNSSQVTTARDMSTLGVALMKNFPNEYRLFSMAS 180
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+GK N + + G DG+KTG+T ASGFN+V++ G++ ++ V+LG +R
Sbjct: 181 FNFRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLGGRTARSR 240
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
+ +LL + + ++ + + + +V
Sbjct: 241 DARMEALLDRYLGRASSSGGAKLMASVGAREPVEVASASGASDVPVPLNA 290
>gi|148997049|ref|ZP_01824703.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP11-BS70]
gi|168575530|ref|ZP_02721466.1| penicillin-binding protein 3 [Streptococcus pneumoniae MLV-016]
gi|169833078|ref|YP_001694325.1| penicillin-binding protein 3 [Streptococcus pneumoniae
Hungary19A-6]
gi|307067470|ref|YP_003876436.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
AP200]
gi|38142285|dbj|BAD00945.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142289|dbj|BAD00947.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142315|dbj|BAD00960.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142317|dbj|BAD00961.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|66817136|gb|AAY56864.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|147756749|gb|EDK63789.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP11-BS70]
gi|168995580|gb|ACA36192.1| penicillin-binding protein 3 [Streptococcus pneumoniae
Hungary19A-6]
gi|183578404|gb|EDT98932.1| penicillin-binding protein 3 [Streptococcus pneumoniae MLV-016]
gi|221327906|gb|ACM17689.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|221327912|gb|ACM17692.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|221327918|gb|ACM17695.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|221327920|gb|ACM17696.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|306409007|gb|ADM84434.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
AP200]
gi|327390225|gb|EGE88568.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
GA04375]
Length = 413
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIEQIGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|239629143|ref|ZP_04672174.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519289|gb|EEQ59155.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 530
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 71/330 (21%), Positives = 135/330 (40%), Gaps = 28/330 (8%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + P + + ++D +TG V+ D + PAS+TK++TA +V
Sbjct: 24 FTIRALAAPEWPSDVSIQADGGIVMDADTGTVLYGKNMDQQYYPASITKILTALIVLERC 83
Query: 70 KEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L ++ S + S++ +G +T+ + L L++ SAN+ A A+A
Sbjct: 84 D-----LDEMVSFSHDDVYNVEAGSSSAGIDEGDVLTVRDCLYALMLASANESANALACH 138
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP---- 182
+ + ++F + MN + +LG + +HF N G+ HYTTA DMA+++ +
Sbjct: 139 VSGSREEFAKLMNEKAASLGCTGSHFANPSGLNDENHYTTAHDMALIAREAIKNPEFLAI 198
Query: 183 ---QYMHYFQIKG-----LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ K K N N +V + GA KTG+T +G +V A +
Sbjct: 199 NGTRSYKLAPTKRTPEGGYVANHHKMLNKNESVY-YPGAFAGKTGYTSLAGNTLVTCAKK 257
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
+LIAV+L + + ++ F N K ++Y + +N + ++
Sbjct: 258 DGMTLIAVVLN--GHQSHYSDTKAMFDFAFRNFQSLKAVDYETQYRSVEN-DMTIAGMTA 314
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
+ + + K F D +
Sbjct: 315 RDSI----SLELDKNGRVVIPKSGDFADVK 340
>gi|15964646|ref|NP_384999.1| hypothetical protein SMc00068 [Sinorhizobium meliloti 1021]
gi|307304223|ref|ZP_07583975.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
BL225C]
gi|307320528|ref|ZP_07599943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
AK83]
gi|15073824|emb|CAC45465.1| Probable D-alanyl-D-alanine carboxypeptidase [Sinorhizobium
meliloti 1021]
gi|306893804|gb|EFN24575.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
AK83]
gi|306902691|gb|EFN33284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sinorhizobium meliloti
BL225C]
Length = 409
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 87/261 (33%), Positives = 143/261 (54%), Gaps = 4/261 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M F + +A + ++A ++D TG V++ PD +PASLTK+M
Sbjct: 1 MTSFRLAMATIAVLFFGAVQAMA----GNASLVVDARTGRVLSAENPDTLHHPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L + TP+ +S A+ PP+ K G T+T++ A+ +IV+SAND A
Sbjct: 57 TLYMTFEALHRGQIAWKTPVPVSATAARKPPTKLGVKAGGTITVEEAVYGMIVRSANDAA 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE L +E+ F + MN ++ LG++ T F+NA G+ TTARDMA L+ +
Sbjct: 117 AAMAERLGGSEEGFARMMNAKARQLGMNRTFFVNASGLPASEQVTTARDMARLAVALMRH 176
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+P+ F ++ +G+ N + + G DG+KTG+T ASG+N+V++ ++ LI
Sbjct: 177 YPREYRLFSVQSFAFRGRVIRGHNNLMYRYQGMDGIKTGYTRASGYNLVSAVNDRNRRLI 236
Query: 241 AVILGALDRNTRNKVSASLLS 261
V+LG +R++ A+LL
Sbjct: 237 GVVLGGRSARSRDEKMAALLD 257
>gi|168212842|ref|ZP_02638467.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE
str. F4969]
gi|170715638|gb|EDT27820.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens CPE
str. F4969]
Length = 444
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 17/329 (5%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
I ++ + +N+F ++ K L+D TG V+AE + PAS TK MTA +
Sbjct: 20 FIFSLILSTNVFAESNV-PEIKGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 78
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
L +TI KN + ++G T++ L L+++SAND AVA+AE
Sbjct: 79 VEKA-----NLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW-----RIKTD 180
+ +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I +
Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDE 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ Y K + + N N KTG+T S +A +
Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKR 253
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
GD+ LI +LG ++ + + +LL GF N + K + ++
Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + + + K++ IDF
Sbjct: 314 PEDIYKTFKNSEIENLSTDEIKKNLNIDF 342
>gi|307704894|ref|ZP_07641785.1| penicillin-binding protein 3 [Streptococcus mitis SK597]
gi|307621508|gb|EFO00554.1| penicillin-binding protein 3 [Streptococcus mitis SK597]
Length = 413
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 71/367 (19%), Positives = 150/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++ +++++++ + + + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIILTLLSLSVIGSASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 LTVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNVPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIKDATVVNTTGLNNETLGDNIYPGSNKDDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I VIL A + +R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVILNADHQDNNPYSRFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKVPVQDGKEDTVTAVAPEDIYLIERGGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|116874117|ref|YP_850898.1| D-alanyl-D-alanine carboxypeptidase [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116742995|emb|CAK22119.1| D-alanyl-D-alanine carboxypeptidase [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 445
Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats.
Identities = 76/383 (19%), Positives = 146/383 (38%), Gaps = 53/383 (13%)
Query: 1 MRQFL-----------VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + + ++ ++S + T ++ +TG ++ D
Sbjct: 1 MKKIIKKTGIAIMAVSLAVSGFLVSPKAAQAAAEPTVNANAAIAIEESTGKILYSKDADK 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLD 105
AS+TK+M Y++ + + K +TIS+ A + S T+
Sbjct: 61 LMGIASMTKMMDEYLLLEAINDGKIKWDDKVTISEYAYKVSQDRSLSNVPLRLGEEYTVQ 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------- 158
+ + + SAN A+AIAE + +EK FV MN ++ L L F+N+ G+
Sbjct: 121 ELYEAMAIYSANGAAIAIAEKVAGSEKAFVDLMNKKAEKLKLGEHQFVNSTGLNNEDLKG 180
Query: 159 ------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA- 206
+ + TAR MA L+ + D+P+ + E + N NW
Sbjct: 181 GQQVGGPKDENKMTARGMAKLAKHLIKDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLL 240
Query: 207 ---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKVSA 257
+ G DG+KTG T +G + A+A++ +I V+L A + R +
Sbjct: 241 PGLIYGRKGVDGLKTGTTDYAGMCLTATAVEDGMRVITVVLHANGGGAGEHTSARFDETN 300
Query: 258 SLLSMGFYNKTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+L F N ++ K D +++ V + ++ + + +
Sbjct: 301 KMLDYSFNNFKVKEVQKAGSKVKDPSSIAVDKGKEDTVGLVTKDAVKLVVPKNDNAPKLS 360
Query: 309 QMKEAKDKESHFIDFEKITLLKN 331
KDK + + +K T +
Sbjct: 361 TKVTLKDK-TLEVPVKKNTAVGE 382
>gi|331266509|ref|YP_004326139.1| D-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 3
[Streptococcus oralis Uo5]
gi|326683181|emb|CBZ00799.1| D-alanyl-D-alanine carboxypeptidase,penicillin-binding protein 3
[Streptococcus oralis Uo5]
Length = 413
Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats.
Identities = 68/367 (18%), Positives = 141/367 (38%), Gaps = 32/367 (8%)
Query: 1 MRQFLVIIAMAMLS-NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++ ++ + + ++ TG ++ E + P AS+TKL
Sbjct: 1 MKKIILSFMTLLVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L++ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 VTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNYTVEQLLEATMVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + D+PQ + + G + +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R +++LL N + +
Sbjct: 241 GTTDKAGASFVGTTVEKGMRIITVVLNADQQDTNPYARFTATSALLDYISANFALKTVVQ 300
Query: 275 YI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
N ++ Q+ ++ S E+ +
Sbjct: 301 KGEAYNDSKVTVLDGKEDNVTAVAKSDISIVQRIGSATTPALQFTPKLTSEMAPLEEGKV 360
Query: 329 LKNKITK 335
+ +
Sbjct: 361 VGTLTYE 367
>gi|295696423|ref|YP_003589661.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
tusciae DSM 2912]
gi|295412025|gb|ADG06517.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
tusciae DSM 2912]
Length = 366
Score = 165 bits (417), Expect = 7e-39, Method: Composition-based stats.
Identities = 74/342 (21%), Positives = 137/342 (40%), Gaps = 19/342 (5%)
Query: 5 LVIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
V + M + + + + ++D +G V+ E D ASLTK++T
Sbjct: 9 FVAVTMILFPGVGAAAANSPDLYGISAQGAAVVDVGSGRVLYEKNGDQMMPIASLTKIVT 68
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ + L +TIS NA+ S+ + G T TL + + ++++S ND A
Sbjct: 69 GWLAVESGR-----LDERVTISANAARKEGSSVYLRAGETYTLRDLVYAMMLRSGNDAAT 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A+AE L +E +F MN ++ +GL HF N HG+ GH +A D+A ++ + +
Sbjct: 124 AVAEHLAGSEARFAALMNAKAREMGLRHVHFANPHGLDAPGHGASAVDLARMTAKALQNP 183
Query: 182 ------PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
H G N N + + GADG+KTG+T +G + +SA +
Sbjct: 184 EFAAVVRTKYHRMPWPGEAWDR-VMRNKNKMLWRYPGADGVKTGYTKRAGRCLASSATRD 242
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN-ISE 294
++ V+L D +A L F + + VP +
Sbjct: 243 GHQVVVVVLKDPDD---WADTARLFDHVFQTYEWVPVQAGPASVPVRGGVVPTVPVRVQG 299
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ + + E + LL+ ++ ++
Sbjct: 300 PDRFPIRADEKFHMDWELKPRLRAPVSRGEPVGLLRIQVGEE 341
>gi|168205928|ref|ZP_02631933.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str.
JGS1987]
gi|170662569|gb|EDT15252.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens E str.
JGS1987]
Length = 444
Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats.
Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 17/329 (5%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
I ++ + +N+F ++ K L+D TG V+AE + PAS TK MTA +
Sbjct: 20 FIFSLILSTNVFAESNV-PEIKGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 78
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
L +TI KN + ++G T++ L L+++SAND AVA+AE
Sbjct: 79 VEKA-----NLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW-----RIKTD 180
+ +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I +
Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEEDHMTTPYDLALIMNAASKNPIIDE 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ Y K + + N N KTG+T S +A +
Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSKHTFTCAAKR 253
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
GD+ LI +LG ++ + + +LL GF N + K + ++
Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + + + K++ IDF
Sbjct: 314 PEDIYKTFKNSEIENLSTDEIKKNLNIDF 342
>gi|154502526|ref|ZP_02039586.1| hypothetical protein RUMGNA_00339 [Ruminococcus gnavus ATCC 29149]
gi|153796922|gb|EDN79342.1| hypothetical protein RUMGNA_00339 [Ruminococcus gnavus ATCC 29149]
Length = 423
Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats.
Identities = 72/328 (21%), Positives = 131/328 (39%), Gaps = 29/328 (8%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ L+D ++G ++ + AS TK+MT + +A +
Sbjct: 49 NTPGQLYARSAVLMDADSGRILFAKNAETERPMASTTKIMTCILALE-----RADPDESV 103
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
++S NA+ P +G L + L L+++S ND AV +AE L + ++F MN
Sbjct: 104 SVSANAAAQPRVRLGTVEGQKFKLKDLLYSLMLESHNDTAVMLAEHLAGSVEQFADEMNQ 163
Query: 141 TSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKG---- 192
++ LGLS THF+ +G+ H TTA ++A + + P+ + +I G
Sbjct: 164 KARELGLSHTHFVTPNGLDGADDGGSHRTTAEELARIMRYCVMESPKRKEFLEITGVSSY 223
Query: 193 -----LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ + N N + GA KTGFT +G+ V + + ++ I +L
Sbjct: 224 QFSDLEQTQTYSCINHNAFLTMMEGAVSGKTGFTGEAGYCYVGALKREKRTFIVALLACG 283
Query: 248 DRNTR---NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
N R + + L+ G + + Q V + + + QKE
Sbjct: 284 WPNNRSYKWEDTKKLMEYGLEHFEYQSMKGAG------QKFKIRVTDGIPD--SNQKEAY 335
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNK 332
Y + E + D+E + + +N
Sbjct: 336 TYAEALSEQSNLSFLLADWESVQVRRNI 363
>gi|254719069|ref|ZP_05180880.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
gi|265984060|ref|ZP_06096795.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
gi|306838351|ref|ZP_07471196.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653]
gi|264662652|gb|EEZ32913.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
gi|306406491|gb|EFM62725.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. NF 2653]
Length = 396
Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats.
Identities = 88/315 (27%), Positives = 132/315 (41%), Gaps = 8/315 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
K P L+D +G V+ D P PASL KLMTA VVF L++ + L T +S+
Sbjct: 37 TKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAEVVFEALEKGRTTLETAYPVSEY 96
Query: 86 ASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
A S + ST T+ + L+ +IV+SAND A+ +AE L +E+ F MN
Sbjct: 97 AWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSANDGAIVLAEGLAGSEQTFAGAMNQ 156
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+K LGLS++ F+N+ G+ G T D+ L+ I P+Y Y+
Sbjct: 157 RAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIHAAHPEYYRYYAQPAYTWNNITQ 216
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N + +GADGM TGFT ASG+ +V SA Q + L + G R + + L+
Sbjct: 217 RNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLI 276
Query: 261 SMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
G D K S+ +P + ++ +
Sbjct: 277 QWGMTGFDDMCIFAANDKVGDAQVFGGQSSTLPLMVKKDVELLLPKEAREKLKARIIYEG 336
Query: 318 SHFIDFEKITLLKNK 332
T +
Sbjct: 337 PLQAPIAAGTEVGRL 351
>gi|89053769|ref|YP_509220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1]
gi|88863318|gb|ABD54195.1| Serine-type D-Ala-D-Ala carboxypeptidase [Jannaschia sp. CCS1]
Length = 398
Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats.
Identities = 75/336 (22%), Positives = 142/336 (42%), Gaps = 10/336 (2%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
++ A + + + + D +G V+ D PAS++KLMT +
Sbjct: 13 LLAAGCFFVSSLMANAQGYETQARAAYVYDHASGQVLLALNADEALPPASMSKLMTLLMA 72
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F L++ + L T + +S++A + S T++ ++ +++ S ND +V + E
Sbjct: 73 FEALRDGRLTLETRVPVSEHAMSFGGSTMFLNTQDRPTIEELIRGVVIVSGNDASVVLGE 132
Query: 126 SLCKT--EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
+L E+ F M ++ LG+ + F NA G GH + RD+ IL+ R+ +FP+
Sbjct: 133 ALSPDGTEEGFATMMTQRAQQLGMMNSTFRNASGWPADGHAMSMRDLGILAQRLIEEFPE 192
Query: 184 YMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
Y YF + + + N N +G +GADG+KTG T +GF +V SA+QGD+ +
Sbjct: 193 YYGYFVETEFDYEDRSPANRFNRNPLLGLGIGADGLKTGHTQEAGFGLVGSAMQGDRRVT 252
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEV 296
VI G + R + L++ F R + ++ + + SE +
Sbjct: 253 FVITGLDSADARAAEAERLVTWAFRQFVMRDVVEPGVELARAPVFLGSQETVGLAPSEGI 312
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+++ + ++
Sbjct: 313 EMLLPALLDPEIEANLT-YTSPLQAPVSAGDVVGEL 347
>gi|85374069|ref|YP_458131.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter litoralis
HTCC2594]
gi|84787152|gb|ABC63334.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter litoralis
HTCC2594]
Length = 347
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 79/309 (25%), Positives = 133/309 (43%), Gaps = 11/309 (3%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASE 88
L+D +G + PD + PAS+TK+MTAY F +K+ K T T S+ +
Sbjct: 1 MLVDMASGQTLYARNPDRRFVPASITKVMTAYTAFELMKQGKLAPGTRFTFSEAAADEWY 60
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S +GS + + L + SAND ++ +AE + ++ MN + LG+
Sbjct: 61 RTGSTMFLDRGSETAVTDLLMGITTVSANDGSIVLAEGAAGSVDNWLDLMNAHADALGMH 120
Query: 149 ATHFMNAHGVVQHGH-YTTARDMAILSWRIKTDFPQYM-HYFQIKGLEIKGKKYPNTNWA 206
+HF +G G +TTARD+ L+ + T+ P YF +GL G N +
Sbjct: 121 QSHFGTPNGWPDEGRTFTTARDLVTLAKALITEHPGLYARYFGHRGLRTNGIAQDNYDPI 180
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
G GADG+KTGFT +G+ + SA + + L+ V+ + +R++ + +L+ GF
Sbjct: 181 TGRIEGADGIKTGFTNQAGWGFLGSAERDGRRLVMVVAASPGMRSRDETARALMEWGFGA 240
Query: 267 KTDRKKINYIIK---DFYQQNLSNEVPNISE---EVCTTQKEIINYNTQMKEAKDKESHF 320
R Q VP +++ V + ++ +
Sbjct: 241 FDSRMLFRSGDTVGHARVQDGAEAAVPLMADRDIPVALPENANAEITLRIAYEGPLRAPV 300
Query: 321 IDFEKITLL 329
EK+ L
Sbjct: 301 EQGEKVAQL 309
>gi|17986319|ref|NP_538953.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
16M]
gi|225853470|ref|YP_002733703.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
23457]
gi|17981904|gb|AAL51217.1| d-alanyl-d-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
16M]
gi|225641835|gb|ACO01749.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis ATCC
23457]
Length = 370
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 118/341 (34%), Positives = 191/341 (56%), Gaps = 11/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I A+ + A +D TG V + W PASLTK+M
Sbjct: 1 MSKSLRIWFAAVAFSGIALSGAA----ANPSIAVDVATGKVYEQQDAFQRWYPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 57 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ +
Sbjct: 117 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 176
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 177 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 236
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
L+A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+
Sbjct: 237 LLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 295
Query: 299 TQKEIINYNTQMKEAKDK----ESHFIDFEKITLLKNKITK 335
Q ++ + E + K H +D + I + +++
Sbjct: 296 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 336
>gi|331270026|ref|YP_004396518.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
BKT015925]
gi|329126576|gb|AEB76521.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
BKT015925]
Length = 412
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 90/329 (27%), Positives = 144/329 (43%), Gaps = 22/329 (6%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
T L+D NTG V+ D + PAS TK+MTA + K L +T
Sbjct: 27 TPPTVSADGVVLMDKNTGQVLYSKNLDTQYPPASTTKIMTALLTLENCK-----LDDVVT 81
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ KNA S +G +T+ + L L+++SAND AVA++E + + K+FV MN
Sbjct: 82 VGKNAVNVDGSKVYLFEGEKLTVKDLLYALLLQSANDSAVALSEHVAGSTKEFVNLMNKK 141
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP------QYMHYFQIKGLEI 195
+K LG T+F+N HG+ H TTARD+ ++ + M+Y E
Sbjct: 142 AKELGCKNTNFVNPHGLYDDKHRTTARDLGLILRELSKHEEFKQIATTSMYYINPTNKET 201
Query: 196 KGKKYPNTNWAVG-----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N + + + G +G KTG+T S + VA+A + ++SLIAV+L ++
Sbjct: 202 KKRPIWNKDKLIQKNSKCYYEGCEGGKTGYTIQSKHSFVATATRNNKSLIAVLLH-DAKH 260
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIK--DFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
T L GF N T N ++ N SE+ +++
Sbjct: 261 TYWDDVIKLFDYGFNNYTRETLYNKDQTLCNYNVTNDLKIPILASEDFYYLKRKDAKDAP 320
Query: 309 QMKEAKDKESHFIDFEKITLL--KNKITK 335
++K + F K ++ N I +
Sbjct: 321 KLKINDESLGSKS-FNKGDIILTGNIIYQ 348
>gi|125973686|ref|YP_001037596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
ATCC 27405]
gi|256005769|ref|ZP_05430722.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
thermocellum DSM 2360]
gi|281417842|ref|ZP_06248862.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
thermocellum JW20]
gi|125713911|gb|ABN52403.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
ATCC 27405]
gi|255990269|gb|EEU00398.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
thermocellum DSM 2360]
gi|281409244|gb|EFB39502.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
thermocellum JW20]
gi|316940119|gb|ADU74153.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
thermocellum DSM 1313]
Length = 415
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 69/328 (21%), Positives = 126/328 (38%), Gaps = 6/328 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+ ++ + + ++ K P L++ G ++ + P + + K+MT +
Sbjct: 14 VAMMILFFSQSPVFAVAEPPEIKAPSAILMEVQRGQILYQKNPKLKLHVSCANKIMTGLI 73
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
++ L T IT+SK A + + G +++ + +++ SAND A +A
Sbjct: 74 ALEKMQN---QLNTNITVSKKAVSVEGAVLNLEVGGKYPVEDLIYSVLLGSANDSANVLA 130
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + EK FV+ MN ++ L + T+F N G+ YTTA D+A+L T +
Sbjct: 131 EYIGGDEKGFVELMNKKAQELEMKDTYFTNPTGLYDEKQYTTAYDLAVLIRYALTKSSTF 190
Query: 185 MHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
F K + N+N ++ G DG KTG+ + +A + Q LI +
Sbjct: 191 NEMFSAKARPWVDGTQILINSNELFWSYDGVDGGKTGYNEIDRQTAITTATRNGQRLICI 250
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
+L + + S LL GF N ++ + +S
Sbjct: 251 VLDSP-EESMYDDSVKLLDYGFLNFRTGILVSMGQPLKKVTVGDKVIDLVSIGDYYYTYP 309
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ E K E K +L
Sbjct: 310 AGENYIKNIEFKVPEKFDPPVLKSDVLG 337
>gi|288561558|ref|YP_003428964.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus
OF4]
gi|288548190|gb|ADC52072.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudofirmus
OF4]
Length = 446
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 69/364 (18%), Positives = 138/364 (37%), Gaps = 31/364 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
++ L+++ +L +S L+D +G ++ + + AS++K+M
Sbjct: 10 IKAVLLLVITNVLITSPVSVSANPNINTNSAILVDATSGKILLQKNINELLKVASMSKMM 69
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS----TFKKGSTMTLDNALKLLIVKSA 116
+ Y+V + + IS E +N+ ++ T T+ + + + SA
Sbjct: 70 SEYLVLEAINNGAISWEQVVPISDLVREISHNNNLSNVYLRQDETYTVKELYESVAIYSA 129
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNL----GLSATHFMNAHGVVQH----------- 161
N +A+AE + +E+ FV MN+ + L F+N+ G+
Sbjct: 130 NGATMALAELIAGSEESFVNMMNDKAMQLELGEYGIDYKFVNSTGLPNQYLLGKHPEGTT 189
Query: 162 ---GHYTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWA----VGT 209
+ T R A L++ + D+P+ + I K + N NW V
Sbjct: 190 EKDENELTVRATAKLAFHLLKDYPEVLETASIERKIFKEGTEDFIQMDNWNWMLPGLVYG 249
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ DG+KTG+T +G++ +A + + LI V+ R + LL GF +
Sbjct: 250 YPDVDGLKTGYTAQAGYSFTGTAERDNVRLITVVTKTSSLEERFSETKKLLDYGFSQFSI 309
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ I + Q+ + E T + +I++ + D E++
Sbjct: 310 EELIPKGYRPEGQETVGVSKGKEHEVAVFTDESLISFVRVGERDNYIPVVTFDQERLNEN 369
Query: 330 KNKI 333
I
Sbjct: 370 GELI 373
>gi|258510666|ref|YP_003184100.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257477392|gb|ACV57711.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 455
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 79/314 (25%), Positives = 131/314 (41%), Gaps = 13/314 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D +TG V+ + P PAS+TK+MTA + LT +T S
Sbjct: 67 PSIVSQAAVVMDMDTGAVVYAKHSTAPHYPASITKIMTALLALR-----LGHLTDVLTAS 121
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+A PP + G TL + L L++ SAND AV IAE + F MN ++
Sbjct: 122 TDAVRQPPDKLYMRAGEKATLKDLLYGLLIDSANDAAVEIAERYGGSVAHFADMMNAEAR 181
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GKK 199
LG + THF+N G+ H TTA DMA+++ P++ + + K
Sbjct: 182 ALGATHTHFVNPSGLPDPRHVTTAYDMAVIAR-AAMQIPEFRTIVDTRSFDWKGTAWQAT 240
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N + T+ GA G+KTGFT + +V +A +G + +AV++ + + +L
Sbjct: 241 LTNLNRMLFTYPGAIGVKTGFTSVAHETLVVAATRGGTTFLAVLMDCPTDAEIRQDATNL 300
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI-SEEVCTTQKEIINYNTQMKEAKDKES 318
L+ F + ++ + + + E P + SE V T + +
Sbjct: 301 LNYAFLHDETQRILPAGYRAGFVLARDGEDPVVTSEPVLATVPIGHPLDVIERVRVSAPL 360
Query: 319 HFIDFEKITLLKNK 332
K
Sbjct: 361 DRAP--KGAAAGEL 372
>gi|306825360|ref|ZP_07458700.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304432298|gb|EFM35274.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 411
Score = 165 bits (417), Expect = 9e-39, Method: Composition-based stats.
Identities = 70/366 (19%), Positives = 142/366 (38%), Gaps = 34/366 (9%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++ I + + + + + ++ TG ++ E + P AS+TKL
Sbjct: 1 MKKIILSFITLFVFGTVSTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L++ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 VTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNYTVEQLLEATMVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + D+PQ + + G + +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGVDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SLL N + +
Sbjct: 241 GTTDKAGASFVGTTVEKGMRIITVVLNADQQDSNPYARFTATSSLLDYVSANFALKTVVQ 300
Query: 275 YI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
++ Q+ + T +S E+ +
Sbjct: 301 KGETYKDSKVTVLDGKEDKVAAIAKSDIAIVQR--VGSETTSALQFTPKSEIAPLEEGKV 358
Query: 329 LKNKIT 334
+
Sbjct: 359 VGTLTY 364
>gi|303241828|ref|ZP_07328323.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio
cellulolyticus CD2]
gi|302590603|gb|EFL60356.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio
cellulolyticus CD2]
Length = 429
Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats.
Identities = 85/361 (23%), Positives = 144/361 (39%), Gaps = 27/361 (7%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ + I+ + NI + Y L+D+ TG VI+E D PAS TK
Sbjct: 1 MKKLFIGIIMFTILNMNINTAKAEPLNIDAKAYILIDSKTGQVISEYNADQKLYPASTTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MTA + ++ M + I N N G + + L L+V+SAN+
Sbjct: 61 IMTAIIGIENADPEQLMTVSQYAI--NNIGPGGMNIGLLPGEQLKFKDVLNALLVRSANE 118
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILS 174
A IAE++ T + F MN +K L + T+F+N G+ H TTARD+++++
Sbjct: 119 TAYVIAENVGPTPEAFFAKMNQRAKELACTNTNFVNPCGMDTDEASQNHLTTARDLSLMA 178
Query: 175 WRIKTDFPQYMHYFQI------KGLEIKGKKYPNTNWAVG------TFLGADGMKTGFTC 222
T + + + P+TN + G+KTG+T
Sbjct: 179 KHAMTLPLFKEIVKKTSCTIPPTNMHNEAYTLPSTNKLFYGKYSSKYYNEVTGIKTGYTV 238
Query: 223 ASGFNIVASAIQ-GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+ FN+V+SA LI+VILG + + S LL GF N + + I
Sbjct: 239 RASFNLVSSAKNEEGMELISVILGCPNSEGIYQSSKDLLEYGFKNYSMQNLIAANSFVTS 298
Query: 282 QQNLSNE------VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + C E N ++ K ++ ++ +L + K
Sbjct: 299 VRVADASYNPNLNIVAAEDLKCILPNEPTNQADISEDIKINKNITAPIKEGAVLGSIEYK 358
Query: 336 K 336
+
Sbjct: 359 Q 359
>gi|329925045|ref|ZP_08279989.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
gi|328940164|gb|EGG36496.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus sp. HGF5]
Length = 323
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 74/293 (25%), Positives = 121/293 (41%), Gaps = 28/293 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
+++L ++ M ++ + I L+D NTG ++ D P P
Sbjct: 3 KRWLWLVMMLLIIVPIGAVVIGNIERAGFKPKVDARAVVLMDLNTGRILLSENGDLPLPP 62
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS++KLMT V+ +K K + IS AS+ K G +T+ + + V
Sbjct: 63 ASMSKLMTELVILDDIKTGKRSWDDEVKISDTASDVRGVKIALKSGEILTVRELFQSITV 122
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT------------HFMNAHGVVQH 161
SAND +VA+AE +E+ FV+ MN +K +GLS+
Sbjct: 123 YSANDASVALAEHFAGSEEAFVRKMNAKAKEIGLSSATRFVNASGVEQGTANGHAWSSDG 182
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWA------VGTFLGA 213
TA D A L+ + P + +I G+ NTNW ++ G
Sbjct: 183 ETVMTAEDTAKLAAHLIRSHPDILSTSSKTQTKISGRNLYLSNTNWMLPSLGGPYSYEGT 242
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
DG+K G+T +G+ +A + LIAV++G + R + + L GF
Sbjct: 243 DGLKAGYTANAGYCFTGTAEKQGSRLIAVVMGTESKEARFEETRKLFDYGFSK 295
>gi|254520208|ref|ZP_05132264.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. 7_2_43FAA]
gi|226913957|gb|EEH99158.1| D-alanyl-D-alanine carboxypeptidase [Clostridium sp. 7_2_43FAA]
Length = 418
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 83/348 (23%), Positives = 139/348 (39%), Gaps = 26/348 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
MR+ + A + T L+D TG VI + PAS TK+
Sbjct: 1 MRRIFLFTAFICSVFTINVKATELPTVYSEGAVLMDGRTGKVIYSKNEHTQYEPASTTKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTA VV K LT +TI++ + S KG T++ + L+++S ND
Sbjct: 61 MTALVVLENTK-----LTDKVTINEKPTLVDGSAIGIAKGEVYTVEELMLGLLLESGNDC 115
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A A+AE + + ++F + MN +K LG T F N G+ + GH TTA D+A++
Sbjct: 116 AEALAEHVSGSNEEFAKLMNAKAKELGALDTTFKNPSGLHEDGHVTTAYDLALIMRAAYQ 175
Query: 180 D-------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM-----KTGFTCASGFN 227
+ + Y + K N N + K G+T +
Sbjct: 176 NEDLVRIAQTESHKYVNHPFSDGSEKWATNRNQLFNEYTPYYYQYAYIGKNGYTPEANHT 235
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
A+A++ +Q L+ +L A D++ L GF N K IN N
Sbjct: 236 YTATAMKDEQFLVVALLNATDKDNFYTNIGPLFDYGFDNFETIKLINK--------NDVL 287
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ I++++ + + ++ S+ +D++K + K I K
Sbjct: 288 DTYKINDDISIPLLAKDDLYYTKSKTEEIPSYTVDYQKKDISKKNINK 335
>gi|330838298|ref|YP_004412878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
ATCC 35185]
gi|329746062|gb|AEB99418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
ATCC 35185]
Length = 379
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 70/248 (28%), Positives = 121/248 (48%), Gaps = 15/248 (6%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L++ TG V+ E D PAS+TK+MT + + + ++
Sbjct: 129 SMTADAAILMNARTGEVLYEKNGDKREYPASMTKMMTCILSVESGRA-------DLAVTI 181
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ + G L + + +++ S N A+AIAE+L +E +F MN ++
Sbjct: 182 TPFAADVETTRVRPGEQARLRDLTRQMMLISDNGAALAIAETLGGSEAQFAAMMNRKARE 241
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------- 197
+G THF+N +G+ HY+TA D+A+++ + P++ K I
Sbjct: 242 IGAFHTHFVNPNGMPDANHYSTAHDIALIAAYGLRN-PEFRKIVGTKASTIYYLQPAGYK 300
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
NTN + ++ G G+KTG+T A+G + ASA++GD LIAV++ + D +TR +A
Sbjct: 301 TYCENTNALLYSYPGCTGLKTGWTRAAGGCLAASAVRGDTELIAVVMHSDDEDTRASEAA 360
Query: 258 SLLSMGFY 265
+LL GF
Sbjct: 361 ALLDYGFS 368
>gi|163844056|ref|YP_001628460.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
gi|163674779|gb|ABY38890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
Length = 370
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 116/341 (34%), Positives = 191/341 (56%), Gaps = 11/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I A+ + A +D TG V + W PASLTK+M
Sbjct: 1 MSKSLRIWFAAVAFSGIALSGAA----ANPSIAVDVATGKVYEQQDAFQRWYPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 57 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ +
Sbjct: 117 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 176
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQ+ HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 177 FPQHAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 236
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+
Sbjct: 237 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 295
Query: 299 TQKEIINYNTQMKEAKDK----ESHFIDFEKITLLKNKITK 335
Q ++ + E + K H +D + I + +++
Sbjct: 296 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 336
>gi|291561741|emb|CBL40540.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SS3/4]
Length = 514
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 74/301 (24%), Positives = 125/301 (41%), Gaps = 34/301 (11%)
Query: 1 MRQFLVIIAMAMLSN---------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L I L + L+D N+G V+ E P+
Sbjct: 1 MKRILSIFLCLTLILGFCPGQTAYAAAEWPSEISISSDGGILMDINSGAVLFEKNSHEPY 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF---KKGSTMTLDNAL 108
PAS+TK++TA +V L +T S A NS+ + G T+++ + L
Sbjct: 61 YPASITKILTALIVIENC-----GLDETVTFSNTAVNSLEPNSSILGARAGDTLSVRDCL 115
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L+++SAN++A A+AE + F + MN + LG + +HF N G+ HY +A
Sbjct: 116 YALLLQSANEVANALAEHCAGSIDAFAEKMNEKTAELGCTDSHFANPSGLNDPNHYVSAY 175
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEI---------KGKKYPNTNWAVG-----TFLGAD 214
DMA+++ + P ++ ++ G +Y + + + GA
Sbjct: 176 DMALIAK-AAFNNPTFVEVDSTTYYDVPAGKLKQYPDGWRYYAHHRMLRRNDSLYYDGAI 234
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G KTG+T +G +V A + LIAV+L T + +L GF N +
Sbjct: 235 GGKTGYTLLAGNTLVTCAERDGMKLIAVVLN--GHQTHYSDTKALFDYGFKNFKSVPVAD 292
Query: 275 Y 275
Sbjct: 293 Q 293
>gi|261410081|ref|YP_003246322.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
sp. Y412MC10]
gi|261286544|gb|ACX68515.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
sp. Y412MC10]
Length = 323
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 74/293 (25%), Positives = 121/293 (41%), Gaps = 28/293 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
+++L ++ M ++ + I L+D NTG ++ D P P
Sbjct: 3 KRWLWLVMMLLIIVPIGAVVIGNIERAGFKPKVDARAVVLMDLNTGRILLSENGDVPLPP 62
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS++KLMT V+ +K K + IS AS+ K G +T+ + + V
Sbjct: 63 ASMSKLMTELVILDDIKTGKRSWDDEVKISDTASDVRGVKIALKSGEILTVRELFQSITV 122
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT------------HFMNAHGVVQH 161
SAND +VA+AE +E+ FV+ MN +K +GLS+
Sbjct: 123 YSANDASVALAEHFAGSEEAFVRKMNAKAKEIGLSSATRFVNASGVEQGTANGHAWSSDG 182
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWA------VGTFLGA 213
TA D A L+ + P + +I G+ NTNW ++ G
Sbjct: 183 ETVMTAEDTAKLAAHLIRSHPDILSTSSKTQTKISGRNLYLSNTNWMLPSLGGPYSYEGT 242
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
DG+K G+T +G+ +A + LIAV++G + R + + L GF
Sbjct: 243 DGLKAGYTANAGYCFTGTAEKQGSRLIAVVMGTESKEARFEETRKLFDYGFSK 295
>gi|187778439|ref|ZP_02994912.1| hypothetical protein CLOSPO_02033 [Clostridium sporogenes ATCC
15579]
gi|187772064|gb|EDU35866.1| hypothetical protein CLOSPO_02033 [Clostridium sporogenes ATCC
15579]
Length = 418
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 76/316 (24%), Positives = 129/316 (40%), Gaps = 17/316 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D+ TG +I PD P+ PAS TK+MTA + + L +TI +
Sbjct: 33 KIAADGVVLMDSKTGKIIYSKNPDKPYPPASTTKIMTALLTLE-----RGNLDDIVTIGR 87
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
S +G + + + L L++ SAND A A+AE L + F + MN +K
Sbjct: 88 KPPLADGSKIYILEGEKIKVRDLLYGLLLASANDCAEALAEYLSGSLDNFSKDMNKRAKE 147
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------HYFQIKGLEIKGK 198
LG ++T+F+N G+ H T+ARD+AI+ + + + +
Sbjct: 148 LGCTSTNFVNPSGLYNDKHRTSARDLAIIMNELVKQPEYSKIATTLSYNIPPTNKSKEKR 207
Query: 199 KYPNTNW-----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
N N + + G +G KTG+T S + VAS + + LI ++
Sbjct: 208 PLWNENRLIQKHSNFYYKGCEGGKTGYTVQSDHSYVASVNKNNHRLIVALVH-DKEKNFF 266
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
+ L + GF N T + N + +VP + E K + T
Sbjct: 267 DDAVKLFNYGFNNFTLNLLYSKDSYVTTYTNDNLKVPLYASEDFYYLKPKDDNTTPDLRL 326
Query: 314 KDKESHFIDFEKITLL 329
++ + F+K ++
Sbjct: 327 ENTNLKNLKFKKGDVV 342
>gi|169346809|ref|ZP_02865760.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str.
JGS1495]
gi|169297091|gb|EDS79213.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens C str.
JGS1495]
Length = 444
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 82/329 (24%), Positives = 139/329 (42%), Gaps = 17/329 (5%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
I ++ + +N+F ++ K L+D TG V+AE + PAS TK MTA +
Sbjct: 20 FIFSLILSTNVFAESNV-PEIKGEGMVLMDGPTGEVLAEKNANEKLAPASTTKTMTALLT 78
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
L +TI KN + ++G T++ L L+++SAND AVA+AE
Sbjct: 79 VEKA-----NLNDVVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 133
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW-----RIKTD 180
+ +E+KF + MN ++ LG THF+NA G+ + H TT D+A++ I +
Sbjct: 134 HISGSEEKFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDE 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ Y K + + N N KTG+T S +A +
Sbjct: 194 ITKKTVYEMPKSIVSGEPIWANNNNQLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKR 253
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
GD+ LI +LG ++ + + +LL GF N + K + ++
Sbjct: 254 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFDNFSLVKLYSKNDVVKEYYIDDKNTLSLVV 313
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + + + K++ IDF
Sbjct: 314 PEDIYKTFKNSEIENLSTDEIKKNLNIDF 342
>gi|38142301|dbj|BAD00953.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142327|dbj|BAD00966.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
Length = 413
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 75/367 (20%), Positives = 150/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++TNTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVETNTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|251777766|ref|ZP_04820686.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243082081|gb|EES47971.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 438
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 75/344 (21%), Positives = 136/344 (39%), Gaps = 22/344 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ + +++ ++S+I + L+D +TG ++ PD PAS TK+M
Sbjct: 6 KILIFFLSIFLVSSINVMAASAPPEINAEGSVLMDASTGEILFSKNPDKVLEPASTTKVM 65
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA + L + ++++ ++ + KG +T+ + L L+++S ND A
Sbjct: 66 TAILTLENCD-----LNEEVVVTEDFTKVDGTTIGLLKGDIVTVKDLLLGLLLESGNDAA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+A + + KF MN + +G THF N G+ H TTA D+A++ +
Sbjct: 121 NALACHISSSIDKFAVLMNKKTIEIGAVNTHFKNPSGLPDPEHLTTAHDLALIMNEAIKN 180
Query: 181 F------PQYMHYFQIKGLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIV 229
+ IK + N N + + K G+T S
Sbjct: 181 DKFLELSKVMTYEIPIKNDSSRTIWINNKNHMINKNSMYYYPYTLAGKNGYTTKSNHTYA 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-DFYQQNLSNE 288
+A L+A L ALD+N + ++ + GF N + D + N
Sbjct: 241 IAAENNGHILVASYLNALDKNKNFEDMKTVFNYGFNNFYFSTIYKKGQEIDSIKLNNDIV 300
Query: 289 VPNISEEV---CTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
VP I+ + + NT +K +DK + F K ++
Sbjct: 301 VPLIASKDVNCVVPNENKDKLNTYIKF-EDKNLNRSSFNKGDVI 343
>gi|256045637|ref|ZP_05448515.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
Rev.1]
gi|256112362|ref|ZP_05453283.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 3 str.
Ether]
gi|256263050|ref|ZP_05465582.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
str. 63/9]
gi|260562941|ref|ZP_05833427.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
16M]
gi|265992060|ref|ZP_06104617.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
str. Rev.1]
gi|265993797|ref|ZP_06106354.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
str. Ether]
gi|260152957|gb|EEW88049.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
16M]
gi|262764778|gb|EEZ10699.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
str. Ether]
gi|263003126|gb|EEZ15419.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
str. Rev.1]
gi|263092926|gb|EEZ17101.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
str. 63/9]
gi|326410032|gb|ADZ67097.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis M28]
gi|326539748|gb|ADZ87963.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis
M5-90]
Length = 371
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 118/341 (34%), Positives = 191/341 (56%), Gaps = 11/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I A+ + A +D TG V + W PASLTK+M
Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAA----ANPSIAVDVATGKVYEQQDAFQRWYPASLTKMM 57
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ +
Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 177
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
L+A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+
Sbjct: 238 LLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 296
Query: 299 TQKEIINYNTQMKEAKDK----ESHFIDFEKITLLKNKITK 335
Q ++ + E + K H +D + I + +++
Sbjct: 297 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 337
>gi|188589932|ref|YP_001919969.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum E3 str.
Alaska E43]
gi|188500213|gb|ACD53349.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum E3 str.
Alaska E43]
Length = 438
Score = 165 bits (416), Expect = 1e-38, Method: Composition-based stats.
Identities = 75/344 (21%), Positives = 136/344 (39%), Gaps = 22/344 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLS-IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ + +++ ++S+I + L+D +TG ++ PD PAS TK+M
Sbjct: 6 KILIFFLSIFLVSSINVMAASAPPEINAEGSVLMDASTGEILFSKNPDKVLEPASTTKVM 65
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA + L + ++++ ++ + KG +T+ + L L+++S ND A
Sbjct: 66 TAILTLENCD-----LNEEVVVTEDFTKVDGTTIGLLKGDIVTVKDLLLGLLLESGNDAA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+A + + KF MN + +G THF N G+ H TTA D+A++ +
Sbjct: 121 NALACHISSSIDKFAVLMNKKAIEIGAINTHFKNPSGLPDPEHLTTAHDLALIMNEAIKN 180
Query: 181 F------PQYMHYFQIKGLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIV 229
+ IK + N N + + K G+T S
Sbjct: 181 DKFLELSKVMTYEIPIKNDSSRTIWINNKNHMINKNSMYYYPYTLAGKNGYTTKSNHTYA 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-DFYQQNLSNE 288
+A L+A L ALD+N + ++ + GF N + D + N
Sbjct: 241 IAAENNGHILVASYLNALDKNKNFEDMKTVFNYGFNNFYFSTIYKKGQEIDSIKLNNDIV 300
Query: 289 VPNISEEV---CTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
VP I+ + + NT +K +DK + F K ++
Sbjct: 301 VPLIASKDVNCVVPNENKDKLNTYIKF-EDKNLNRSSFNKGDVI 343
>gi|163869341|ref|YP_001610597.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
gi|161019044|emb|CAK02602.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
Length = 363
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 116/326 (35%), Positives = 186/326 (57%), Gaps = 12/326 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + ++ S+A+ + +D T H++ N W PASLTKLM
Sbjct: 1 MQRLFYNLFFSFILSLSSTFSLAQP-----FISVDVTTEHILKHNQAFERWYPASLTKLM 55
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV+F + + PITIS+ A++ P S +K GS +TLD AL + +VKS ND+A
Sbjct: 56 TAYVIFRAMSRGEISPNKPITISEYAAKAPSYRSGYKAGSVLTLDTALSITMVKSTNDLA 115
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A++E++ ++K FV+ MN+ +K LG+ THF NA G+ +Y+TARD+A+L+ +I+ +
Sbjct: 116 IAMSEAIAGSQKDFVRKMNSEAKRLGMFGTHFANASGLPDPQNYSTARDIALLAVQIRRE 175
Query: 181 FPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF I ++ + N+N +G F G DGMKTGF CASGFN+VASA + ++
Sbjct: 176 FPQYAHYFSIPAIDFGNNRKIQHNSNNLIGRFYGIDGMKTGFICASGFNLVASATRNKRT 235
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+IAVILGA + + R + +A LL +GF ++ + +K + N+ ++ CT
Sbjct: 236 IIAVILGANNVSEREEKAAQLLEIGFLHQGSPQLTLATLKPYGSNITQAN--NMRQQTCT 293
Query: 299 T---QKEIINYNTQMKEAKDKESHFI 321
+ +Y+ Q
Sbjct: 294 PEAIKMHANSYDDQGNIILTSPFITA 319
>gi|254500491|ref|ZP_05112642.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
DFL-11]
gi|222436562|gb|EEE43241.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
DFL-11]
Length = 558
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 88/316 (27%), Positives = 151/316 (47%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + + + ++A N ++D TG + D PASLTK+MT Y++F
Sbjct: 8 MLVVGTLVLCAPTVASANPKYAGIVVDAKTGKTLYAANADAYRFPASLTKIMTTYIIFEE 67
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
L+ + +++ + +SKNA+ PS K GST+++ +A+ L+ KSAND+A +AE++
Sbjct: 68 LEAGRLSMSSRLKVSKNAAAEVPSKLGLKPGSTISVKDAIGALVTKSANDVATTVAENIA 127
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+E F + M T++ LG+S T F NAHG+ TTARDMA L I+ FP+ F
Sbjct: 128 GSEAAFARRMTRTARQLGMSKTTFRNAHGLPNSKQRTTARDMATLGRAIQERFPERYKLF 187
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ + KG+ N N +G+ G DG+KTG+ ASGFN+V S + ++ ++AV++G
Sbjct: 188 NTRVYKYKGRNLRNHNRLLGSVKGVDGIKTGYIRASGFNLVTSVQRNNRHIVAVVMGGRT 247
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
RN L+ + + + +I + + +
Sbjct: 248 GARRNAHMTDLIGRYLHKASRGTRTAPLIASAGPVFAFDAASLKEPPLPANKPGGGIAPP 307
Query: 309 QMKEAKDKESHFIDFE 324
S + +
Sbjct: 308 ATGAPVVLASAYAPVK 323
>gi|254372818|ref|ZP_04988307.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
tularensis subsp. novicida GA99-3549]
gi|151570545|gb|EDN36199.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
novicida GA99-3549]
Length = 444
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 94/372 (25%), Positives = 147/372 (39%), Gaps = 58/372 (15%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
P + +D TG +++E D PASLTK+MT+Y+V S +K T I
Sbjct: 47 PANIELDAPAWVAMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMI 106
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
IS+NA+ S K G+ +++ N + + V S ND +A+AE + T + F MN
Sbjct: 107 PISENAASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQ 166
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199
T+K +G++ THF N G+ YTTA DMA+L+ +FP+ + KGL K
Sbjct: 167 TAKAIGMNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQ 226
Query: 200 ---------------------------------------------------YPNTNWAVG 208
N N +
Sbjct: 227 DSVSIADRKQCLPKFDRATGNVIESYTVKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLF 286
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
TF GADGMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL
Sbjct: 287 TFDGADGMKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYE 346
Query: 269 DRKKINY-----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE-AKDKESHFID 322
+ I D + + ++ + Y +K+ + +
Sbjct: 347 NVLLYKANSPVTISADNIPNAKAGQKLTVASNQNIYKTVPKTYVPYLKQGIEFNPNLKAP 406
Query: 323 FEKITLLKNKIT 334
+ + N +
Sbjct: 407 IKTGQTVGNLVI 418
>gi|227823262|ref|YP_002827234.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii
NGR234]
gi|227342263|gb|ACP26481.1| putative D-alanyl-D-alanine carboxypeptidase [Sinorhizobium fredii
NGR234]
Length = 372
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 119/308 (38%), Positives = 180/308 (58%), Gaps = 2/308 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+ +L+ + L+ A ++D T V W PASLTKLMTAY F
Sbjct: 14 AIGVLAGVCAALAAALPVSANPRLVVDVATLKVYEHQDIFQKWYPASLTKLMTAYTTFQA 73
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+K + L +P+ ++KNA+ PPS +K G MTLD+ALK+++VKSAND+AVAIAE++
Sbjct: 74 IKAGQLTLESPVVMTKNAASEPPSKMFYKPGQAMTLDSALKMMLVKSANDVAVAIAETVS 133
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+E+ F+ MN ++ +G++++HF+NA+G+ G YTTARD+A+L+ +K +FPQY YF
Sbjct: 134 GSEQAFIDRMNAEARRIGMTSSHFINANGLPGQGQYTTARDLAVLAITLKREFPQYASYF 193
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
++G K Y N N +G F GADGMKTGF CASGFN V+SA + +S+++V+LG
Sbjct: 194 SLEGFTTGKKDYANYNMLIGRFEGADGMKTGFICASGFNQVSSATRAGRSVVSVVLGEDS 253
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R SA LL M K I + + V ++S+E+C+ Q +
Sbjct: 254 LGARADESARLLQMALTTSAAEKPSLTAIAPYGE--SREVVADVSKEICSKQAAKVRSEG 311
Query: 309 QMKEAKDK 316
+ + + K
Sbjct: 312 RDEAGRQK 319
>gi|161619952|ref|YP_001593839.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
23365]
gi|189025096|ref|YP_001935864.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
S19]
gi|254696286|ref|ZP_05158114.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 2 str.
86/8/59]
gi|254705040|ref|ZP_05166868.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 3 str. 686]
gi|161336763|gb|ABX63068.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
23365]
gi|189020668|gb|ACD73390.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
S19]
Length = 370
Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats.
Identities = 117/341 (34%), Positives = 191/341 (56%), Gaps = 11/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I A+ + A +D TG V + W PASLTK+M
Sbjct: 1 MSKSLRIWFAAVAFSGIALSGAA----ANPSIAVDVATGKVYEQQDAFQRWYPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 57 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ +
Sbjct: 117 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 176
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 177 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 236
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+
Sbjct: 237 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 295
Query: 299 TQKEIINYNTQMKEAKDK----ESHFIDFEKITLLKNKITK 335
Q ++ + E + K H +D + I + +++
Sbjct: 296 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 336
>gi|306839705|ref|ZP_07472507.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653]
gi|306405165|gb|EFM61442.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653]
Length = 370
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 117/341 (34%), Positives = 191/341 (56%), Gaps = 11/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I A+ + A +D TG V + W PASLTK+M
Sbjct: 1 MSKSLRIWFAAVAFSGIALSGAA----ANPSIAVDVATGKVYEQQDAFQRWYPASLTKMM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 57 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 116
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ +
Sbjct: 117 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 176
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 177 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 236
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+
Sbjct: 237 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPTQTANLNQAV-DMRKAICS 295
Query: 299 TQKEIINYNTQMKEAKDK----ESHFIDFEKITLLKNKITK 335
Q ++ + E + K H +D + I + +++
Sbjct: 296 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 336
>gi|154483610|ref|ZP_02026058.1| hypothetical protein EUBVEN_01314 [Eubacterium ventriosum ATCC
27560]
gi|149735520|gb|EDM51406.1| hypothetical protein EUBVEN_01314 [Eubacterium ventriosum ATCC
27560]
Length = 387
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 87/325 (26%), Positives = 147/325 (45%), Gaps = 10/325 (3%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+F S L++++TG V+ EN + +PAS+TK+MT ++F + K
Sbjct: 19 VFGEESHELNIDSKSCVLMESSTGMVLYENNQNEKLSPASITKIMTLVLIFDAIHSGKIK 78
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
LT T S A S ++G T T++ +K +I+ S ND +V +AE + +E+ FV
Sbjct: 79 LTDVATTSAYAKSMGGSQVFLEEGETQTVETLIKCIIIASGNDASVVMAEMIAGSEEAFV 138
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
+ MN +K+LG++ THF++ G+ HYTTA+D+A++S + +P+ Y I
Sbjct: 139 KKMNERAKSLGMNNTHFIDCCGLTDSDDHYTTAKDVALMSRELIEKYPEIFKYSTIWMES 198
Query: 195 IKGKK--------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
I K NTN + T G+KTG T + + + A + LIAV++ A
Sbjct: 199 ITHKTKAGEKEFVLSNTNKLLKTNQYVKGLKTGSTSKAKYCVSTVAEKDGVQLIAVVMAA 258
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS-EEVCTTQKEIIN 305
D R K S L++ GF N + N + +IS + +
Sbjct: 259 PDYKIRFKESEKLINYGFSNCKVYTDNDGYKTKIKVTNGKKDKVDISTNRFSYVDTKGRD 318
Query: 306 YNTQMKEAKDKESHFIDFEKITLLK 330
+ K+ + +K +
Sbjct: 319 LSKVTKKVFVNKKVKAPVKKNQKVG 343
>gi|208779297|ref|ZP_03246643.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida FTG]
gi|254374319|ref|ZP_04989801.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
novicida GA99-3548]
gi|151572039|gb|EDN37693.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
novicida GA99-3548]
gi|208745097|gb|EDZ91395.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida FTG]
gi|332678194|gb|AEE87323.1| D-alanyl-D-alanine carboxypeptidase [Francisella cf. novicida Fx1]
Length = 444
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 94/372 (25%), Positives = 147/372 (39%), Gaps = 58/372 (15%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
P + +D TG +++E D PASLTK+MT+Y+V S +K T I
Sbjct: 47 PANIELDAPAWVAMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMI 106
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
IS+NA+ S K G+ +++ N + + V S ND +A+AE + T + F MN
Sbjct: 107 PISENAASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQ 166
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199
T+K +G++ THF N G+ YTTA DMA+L+ +FP+ + KGL K
Sbjct: 167 TAKAIGMNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQ 226
Query: 200 ---------------------------------------------------YPNTNWAVG 208
N N +
Sbjct: 227 DSVSIADRKQCLPKFDRATGNVIESYTVKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLF 286
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
TF GADGMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL
Sbjct: 287 TFDGADGMKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYE 346
Query: 269 DRKKINY-----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE-AKDKESHFID 322
+ I D + + ++ + Y +K+ + +
Sbjct: 347 NVLLYKANSPVTISADNIPNAKAGQKLTVASNQNIYKTVPKTYVPYLKQGIEFNPNLNAP 406
Query: 323 FEKITLLKNKIT 334
+ + N +
Sbjct: 407 IKTGQTVGNLVI 418
>gi|260461046|ref|ZP_05809295.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
opportunistum WSM2075]
gi|259033080|gb|EEW34342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium
opportunistum WSM2075]
Length = 297
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 86/251 (34%), Positives = 137/251 (54%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + L++ + ++D TG + E PASLTK+MT Y++F +
Sbjct: 26 CSTTTPPDSVLAVPAPPQKYAAIVVDAQTGKQLFEVNSTAQRYPASLTKMMTLYLLFEAM 85
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ T I +S +A+ PP+ F++G T+ +D+A++ ++VKSAND+AVA+ E L
Sbjct: 86 DSGRVTKETQIPVSDHAASQPPTKMRFRRGETIDVDSAIRAIVVKSANDVAVAVGEYLGG 145
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+E +F M + ++ LG+++T F NA G+ TTARDMA+L + + FPQ+ HYF
Sbjct: 146 SEDQFAAMMTSKARQLGMTSTTFRNASGLPDDSQMTTARDMALLGMALHSRFPQHFHYFS 205
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+G+ N +G G DG+KTG+ ASGFNIV S + LI V++GA
Sbjct: 206 ESDFMFRGRLVRGHNDMLGRVRGVDGIKTGYIRASGFNIVTSYNADGRRLIVVVMGADSA 265
Query: 250 NTRNKVSASLL 260
RN +L+
Sbjct: 266 RQRNDHVEALI 276
>gi|293365274|ref|ZP_06611991.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus oralis ATCC
35037]
gi|291316724|gb|EFE57160.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus oralis ATCC
35037]
Length = 413
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/366 (18%), Positives = 140/366 (38%), Gaps = 32/366 (8%)
Query: 1 MRQFLVIIAMAMLS-NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++ ++ + + ++ TG ++ E + P AS+TKL
Sbjct: 1 MKKIILSFMTLLVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L++ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 VTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNYTVEQLLEATMVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + D+PQ + + G + +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R +++LL N + +
Sbjct: 241 GTTDKAGASFVGTTVEKGMRIITVVLNADQQDTNPYARFTATSALLDYISANFALKTVVQ 300
Query: 275 YI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
N ++ Q+ ++ S E+ +
Sbjct: 301 KGEAYNDSKVTVLDGKEDNVTAVAKSDISIVQRIGSGTTPALQFTPKSTSEMAPLEEGKV 360
Query: 329 LKNKIT 334
+
Sbjct: 361 VGTLTY 366
>gi|255505895|ref|ZP_05348727.3| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
DSM 14469]
gi|255265270|gb|EET58475.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
DSM 14469]
Length = 625
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 75/324 (23%), Positives = 134/324 (41%), Gaps = 23/324 (7%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN P + L+D +TG ++ + PAS+TK+MT +
Sbjct: 60 SNNIPNWPQGDPVNAETAILMDADTGAILYAKSIEKQEYPASITKIMTTLIALEK----- 114
Query: 74 AMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L+ +T S+NA Y S+ G +TL+ L +++ SAN+I+ A+AE +
Sbjct: 115 GNLSDVVTFSENAVYSIEYGSSHLGLTAGEELTLEQCLYGIMLASANEISNAVAEHIGGD 174
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM----- 185
+ FV MN ++ LG + THF+N HG+ HY A+DMA++ +
Sbjct: 175 IETFVGMMNEKAQELGCTNTHFVNVHGLHDENHYVCAKDMALIMQAALKNEKFREIIGTV 234
Query: 186 -HYFQIKGLEIKGKKYPNTNWAVGT----FLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ F L + + + N + + + G G K G+T + +V +A + ++I
Sbjct: 235 EYNFPETNLVDEVRYFINHHKMISEEGMLYDGCIGGKNGYTDEAWNTLVTAAERDGMTII 294
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
+V+L + + LL GF N D + N D + + E+ +
Sbjct: 295 SVVLRCPGQYVSYDDTKVLLDYGFANFHDAQIANTNSADIEITGIEDA-----AELEKIK 349
Query: 301 KEIINYNTQMKEAKDKESHFIDFE 324
+ + A+ K + E
Sbjct: 350 QADFSAAPFEMAAETKVTLPAGVE 373
>gi|241204717|ref|YP_002975813.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240858607|gb|ACS56274.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 397
Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/340 (21%), Positives = 134/340 (39%), Gaps = 8/340 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+R ++ A + + K +++ TG V+ D ++PASL KLM
Sbjct: 6 LRLLACLMPFATGAFAADGGAAGFATKAAQAYMIEAATGTVLLAKNEDQGFSPASLAKLM 65
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKS 115
T + F L + + L T +S+ A + S + +++ +K + ++
Sbjct: 66 TMDLAFEALTKGQITLDTEYPVSEYAWRTGGAPSRTATMFASLKSRVRVEDLIKGVAIQG 125
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND + +AE + +E++F M ++ LG+ F N+ G+ TAR+M L+
Sbjct: 126 ANDSCIILAEGMAGSEQQFAVSMTRRARELGMEKAEFGNSTGLPDGKSKVTAREMVTLAA 185
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
++ +P YF E N N +G LGADG+ TGFT G++IVAS +
Sbjct: 186 ALQQTYPNLYPYFAQPDFEWNKIFQRNRNPLLGLDLGADGLATGFTEGEGYSIVASVERD 245
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNI 292
+ L + G R + + +L G +R+ I + V +
Sbjct: 246 GRRLFVALAGIASDKERTEEAKRVLEWGLTAFENRQIFGEKEVIGAASVYGGTARTVDLV 305
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + I N + + + T
Sbjct: 306 AKAPVSVYIPISNPDRLSARIIYRWPLTAPVKPDTQAGTL 345
>gi|110802740|ref|YP_699397.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens SM101]
gi|110683241|gb|ABG86611.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens SM101]
Length = 427
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 87/322 (27%), Positives = 143/322 (44%), Gaps = 19/322 (5%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
I ++ + +N+F ++ K L+D TG V+AE + PAS TK MTA +
Sbjct: 3 FIFSLILSTNVFAESNV-PEIKGEGMVLMDGTTGEVLAEKNANEKLAPASTTKTMTALLT 61
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
L +TI KN + ++G T++ L L+++SAND AVA+AE
Sbjct: 62 VEKA-----NLNDIVTIGKNPPLAEGTRVGLQEGDKYTVEELLNALLIQSANDAAVALAE 116
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS-----WRIKTD 180
+ +E +F + MN ++ LG THF+NA G+ + H TT D+A++ I +
Sbjct: 117 HISGSEGEFAKLMNERAEELGAKNTHFVNASGLFEDDHMTTPYDLALIMNAASKNPIIDE 176
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ Y K + + N N KTG+T S +A +
Sbjct: 177 ITKKTVYEMPKSIVSGEPIWANNNNKLIHQTSPYYNKDIFCNKTGYTTKSRHTFTCAAKR 236
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--IIKDFYQQNLSNEVPNI 292
GD+ LI +LG ++ + + +LL GF N + K + +IK++Y + +N
Sbjct: 237 GDRKLILTLLGYDTKDQYYEDTKNLLDYGFNNFSLVKLYSKNDVIKEYYIDDKNNLSLLA 296
Query: 293 SEEVCTTQKEIINYNTQMKEAK 314
E++ T K N E K
Sbjct: 297 PEDIYKTFKNSEIENLSTDEIK 318
>gi|260888386|ref|ZP_05899649.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
ATCC 35185]
gi|260861922|gb|EEX76422.1| serine-type D-Ala-D-Ala carboxypeptidase [Selenomonas sputigena
ATCC 35185]
Length = 354
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 70/248 (28%), Positives = 121/248 (48%), Gaps = 15/248 (6%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L++ TG V+ E D PAS+TK+MT + + + ++
Sbjct: 104 SMTADAAILMNARTGEVLYEKNGDKREYPASMTKMMTCILSVESGRA-------DLAVTI 156
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ + G L + + +++ S N A+AIAE+L +E +F MN ++
Sbjct: 157 TPFAADVETTRVRPGEQARLRDLTRQMMLISDNGAALAIAETLGGSEAQFAAMMNRKARE 216
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------- 197
+G THF+N +G+ HY+TA D+A+++ + P++ K I
Sbjct: 217 IGAFHTHFVNPNGMPDANHYSTAHDIALIAAYGLRN-PEFRKIVGTKASTIYYLQPAGYK 275
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
NTN + ++ G G+KTG+T A+G + ASA++GD LIAV++ + D +TR +A
Sbjct: 276 TYCENTNALLYSYPGCTGLKTGWTRAAGGCLAASAVRGDTELIAVVMHSDDEDTRASEAA 335
Query: 258 SLLSMGFY 265
+LL GF
Sbjct: 336 ALLDYGFS 343
>gi|319899049|ref|YP_004159142.1| penicillin-binding protein [Bartonella clarridgeiae 73]
gi|319403013|emb|CBI76568.1| penicillin-binding protein [Bartonella clarridgeiae 73]
Length = 449
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 90/312 (28%), Positives = 156/312 (50%), Gaps = 5/312 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
++ ++ + + ++S + + E + ++D NTG + + PASLTK+M
Sbjct: 13 KKVVIPLIVLVISYSWALATPKEAHPDKYAAIVIDANTGKTLFQANATLKRYPASLTKMM 72
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y++F +K ++ TPI IS A+ PP+ K G T+++++A K LI KSAND+A
Sbjct: 73 TLYMIFEAMKNRRITPNTPIPISNYAATRPPTKMGIKAGQTISVESAAKALITKSANDVA 132
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
AI E L +E+KF Q M ++ LG+ T F NA G+ +Y+TA+DMA L+ ++
Sbjct: 133 TAIGEYLGGSEQKFAQMMTVKARKLGMKNTRFANASGLPDTRNYSTAQDMATLALALRKH 192
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F++ +G+ + N + T G DG+KTG+T SG N+ S +S++
Sbjct: 193 FPEQYKLFKMTHFRFRGQTINSHNTLIKTIKGIDGIKTGYTQMSGSNLATSMRIDGRSIV 252
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AV++G TR+ ASLL + + + + +
Sbjct: 253 AVVMGGKSSTTRDIHMASLL----KQYLPKASRTKTDEHLVATTHYKLPTGSATPIPIIK 308
Query: 301 KEIINYNTQMKE 312
+IN + ++
Sbjct: 309 NNLINSDDEIST 320
>gi|23502884|ref|NP_699011.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
gi|62290881|ref|YP_222674.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
9-941]
gi|82700793|ref|YP_415367.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar
Abortus 2308]
gi|237816389|ref|ZP_04595382.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
gi|254690170|ref|ZP_05153424.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 6 str.
870]
gi|254694661|ref|ZP_05156489.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 3 str.
Tulya]
gi|254700670|ref|ZP_05162498.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 5 str. 513]
gi|254731203|ref|ZP_05189781.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 4 str.
292]
gi|256060003|ref|ZP_05450185.1| D-alanyl-D-alanine carboxypeptidase [Brucella neotomae 5K33]
gi|256258424|ref|ZP_05463960.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 9 str.
C68]
gi|256370435|ref|YP_003107946.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
gi|260546143|ref|ZP_05821883.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
gi|260567492|ref|ZP_05837962.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
gi|260755709|ref|ZP_05868057.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
str. 870]
gi|260758934|ref|ZP_05871282.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
str. 292]
gi|260760656|ref|ZP_05872999.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
str. 86/8/59]
gi|260884736|ref|ZP_05896350.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
str. C68]
gi|261214985|ref|ZP_05929266.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
str. Tulya]
gi|261323978|ref|ZP_05963175.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
gi|261751178|ref|ZP_05994887.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
513]
gi|261755741|ref|ZP_05999450.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
686]
gi|294851267|ref|ZP_06791940.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
gi|297247266|ref|ZP_06930984.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
B3196]
gi|306842839|ref|ZP_07475479.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2]
gi|23348913|gb|AAN30926.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
gi|62197013|gb|AAX75313.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
9-941]
gi|82616894|emb|CAJ11993.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
melitensis biovar Abortus 2308]
gi|237788456|gb|EEP62671.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
gi|256000598|gb|ACU48997.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
gi|260096250|gb|EEW80126.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
gi|260157010|gb|EEW92090.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
gi|260669252|gb|EEX56192.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
str. 292]
gi|260671088|gb|EEX57909.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
str. 86/8/59]
gi|260675817|gb|EEX62638.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
str. 870]
gi|260874264|gb|EEX81333.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
str. C68]
gi|260916592|gb|EEX83453.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
str. Tulya]
gi|261299958|gb|EEY03455.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
gi|261740931|gb|EEY28857.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
513]
gi|261745494|gb|EEY33420.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
686]
gi|294819856|gb|EFG36855.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
gi|297174435|gb|EFH33782.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
B3196]
gi|306287033|gb|EFM58544.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2]
Length = 371
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 117/341 (34%), Positives = 191/341 (56%), Gaps = 11/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I A+ + A +D TG V + W PASLTK+M
Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAA----ANPSIAVDVATGKVYEQQDAFQRWYPASLTKMM 57
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ +
Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 177
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+
Sbjct: 238 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 296
Query: 299 TQKEIINYNTQMKEAKDK----ESHFIDFEKITLLKNKITK 335
Q ++ + E + K H +D + I + +++
Sbjct: 297 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 337
>gi|157825663|ref|YP_001493383.1| penicillin-binding protein dacF precursor [Rickettsia akari str.
Hartford]
gi|157799621|gb|ABV74875.1| penicillin-binding protein dacF precursor [Rickettsia akari str.
Hartford]
Length = 306
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 92/286 (32%), Positives = 142/286 (49%), Gaps = 3/286 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+V A +S + + ++D +G V+ + PASLTKLMT
Sbjct: 10 IFIVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRVYPASLTKLMTL 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F +++ K L + +S+ AS+ PP K G T+T+ A+ LI+KSAND AV
Sbjct: 70 YLMFEAIEDGKLSLDQKLLVSQKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVT 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ +K D+P
Sbjct: 130 VAEGMKGSEKAFAHLMNIKAKQLGMKNTYFKNASGWHDPLQLTTARDMAKLTMALKKDYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+Y F +G N + GA+GMKTGF +G+N+V +A + +SLIAV
Sbjct: 190 KYYPLFSKTSFVFRGNIVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ G +R++ LL + + ++ + N S
Sbjct: 250 VTGGKSAASRDQKMMWLLD---QHFNIKPIVHKPLIKLASNNKSTT 292
>gi|254713557|ref|ZP_05175368.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M644/93/1]
gi|254716088|ref|ZP_05177899.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M13/05/1]
gi|261217856|ref|ZP_05932137.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
gi|261321294|ref|ZP_05960491.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
gi|260922945|gb|EEX89513.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
gi|261293984|gb|EEX97480.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
Length = 371
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 117/341 (34%), Positives = 191/341 (56%), Gaps = 11/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I A+ + A +D TG V + W PASLTK+M
Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAA----ANPSIAVDVATGKVYEQQDAFQRWYPASLTKMM 57
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ +
Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 177
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+
Sbjct: 238 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 296
Query: 299 TQKEIINYNTQMKEAKDK----ESHFIDFEKITLLKNKITK 335
Q ++ + E + K H +D + I + +++
Sbjct: 297 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 337
>gi|92117941|ref|YP_577670.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
X14]
gi|91800835|gb|ABE63210.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
X14]
Length = 586
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 86/296 (29%), Positives = 153/296 (51%), Gaps = 5/296 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D N+G ++ PD +PASLTK+MT Y++F L K L T + +S +A+
Sbjct: 56 ASIIVDANSGATLSSTNPDSLRHPASLTKMMTLYLLFERLDAGKINLDTEMRVSGHAAAQ 115
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
P+ + G T+ +++A+K L+ KSAND AV IAE++ E F + M ++ LG++
Sbjct: 116 DPTKLGLRSGQTIRVEDAIKGLVTKSANDAAVVIAEAVGGDEDDFARMMTRKARALGMTR 175
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T + NA G+ TTARD A L ++ FP+Y YF +G+ N +G+
Sbjct: 176 TVYRNASGLPDDDQVTTARDQATLGRALQDRFPRYYRYFATTSFTFRGRTIRGHNHLLGS 235
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
G DG+KTG+ +SGFN+V + +G++ L+ V+LG +R+ LL+
Sbjct: 236 VDGVDGIKTGYIRSSGFNLVTNLKRGNRHLVGVVLGGRSSGSRDATMRKLLTDNLDKAAT 295
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN-YNTQMKEAKDKESHFIDFE 324
R+ + I + + ++ ++E+ ++ + + + ++ A E + E
Sbjct: 296 RRTVAAITES----STADANAQVAEDQARSRPKGMKQVDGAVQVASAPEPVALPTE 347
>gi|254718081|ref|ZP_05179892.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. 83/13]
gi|265983032|ref|ZP_06095767.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
gi|264661624|gb|EEZ31885.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
Length = 371
Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats.
Identities = 117/341 (34%), Positives = 191/341 (56%), Gaps = 11/341 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I A+ + A +D TG V + W PASLTK+M
Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAA----ANPSIAVDVATGKVYEQQDAFQRWYPASLTKMM 57
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ +
Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 177
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+
Sbjct: 238 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPTQTANLNQAV-DMRKAICS 296
Query: 299 TQKEIINYNTQMKEAKDK----ESHFIDFEKITLLKNKITK 335
Q ++ + E + K H +D + I + +++
Sbjct: 297 EQAMADRWDGREVEGRLKINSPYIHAMDHDPIAVQVRLVSE 337
>gi|121602290|ref|YP_988886.1| D-alanyl-D-alanine carboxypeptidase [Bartonella bacilliformis
KC583]
gi|120614467|gb|ABM45068.1| D-alanyl-D-alanine carboxypeptidase [Bartonella bacilliformis
KC583]
Length = 448
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 96/311 (30%), Positives = 151/311 (48%), Gaps = 5/311 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ I + +++ + + ++D NTG + + PASLTK+M
Sbjct: 13 KKTAIFLVIFVASYSWVEAAPKGVHADKYAAIVIDANTGKTLFQANATMRRYPASLTKMM 72
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y++F ++ ++ TPI IS AS PP+ K G T+ ++ A K LI KSAND+A
Sbjct: 73 TLYMLFEAMQVRRVAPNTPIPISAYASTRPPTKIGLKTGQTIPVEAAAKALITKSANDVA 132
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
AI E L +E+KF Q M ++ LG+ T+F NA G+ +Y+TA+D+AILS ++
Sbjct: 133 AAIGEYLGGSEQKFAQMMTVKARQLGMINTNFANASGLPDTRNYSTAQDLAILSLALREH 192
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQ F+IK GK + N V T G DG+KTG+T SG N+ S G +S++
Sbjct: 193 FPQQYKLFKIKSFVFHGKIINSHNKLVQTMKGVDGIKTGYTQMSGSNLATSMRLGGRSIV 252
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AV++G R+ A+LL+ + K ++ NL + +
Sbjct: 253 AVVMGGKSSVERDIHMANLLNKYLPKASPVKTDKRLVAAATYHNL---PTGAKAPIPVAK 309
Query: 301 KEIINYNTQMK 311
N +
Sbjct: 310 ANSRNLEDDIS 320
>gi|254714078|ref|ZP_05175889.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
gi|254716865|ref|ZP_05178676.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
gi|261218667|ref|ZP_05932948.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
gi|261321835|ref|ZP_05961032.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
gi|260923756|gb|EEX90324.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
gi|261294525|gb|EEX98021.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
Length = 396
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 90/337 (26%), Positives = 144/337 (42%), Gaps = 11/337 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A+ + + K P L+D +G V+ D P PASL KL+TA
Sbjct: 15 LLGTVFAAVPPAWAAPANSSIVTKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLITAE 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAND 118
VVF L++ + L T +S+ A S + ST T+ + L+ +IV+SAND
Sbjct: 75 VVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSAND 134
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A+ +AE L +E+ F MN +K LGLS++ F+N+ G+ G T D+ L+ I
Sbjct: 135 GAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIH 194
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
P+Y Y++ N N + +GADGM TGFT ASG+ +V SA Q +
Sbjct: 195 AAHPEYYRYYEQPAYTWNNITQRNRNPLLRLEVGADGMGTGFTEASGYALVGSAEQNGRR 254
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE------VPNI 292
L + G R + + L+ G D + K Q + V
Sbjct: 255 LFLAMSGLASVKEREEEARKLIQWGMTGFDDMRIFAANDKVGDAQVFGGQSSTLPLVVKK 314
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
E+ ++ ++ ++ ++ L
Sbjct: 315 DVELLLPKEAREKLKARIIYEGPLQAPIAAGTEVGRL 351
>gi|307946404|ref|ZP_07661739.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp.
TrichSKD4]
gi|307770068|gb|EFO29294.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp.
TrichSKD4]
Length = 492
Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats.
Identities = 95/320 (29%), Positives = 160/320 (50%), Gaps = 1/320 (0%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60
R ++ + +++ + + Y ++D TG + + D PASLTK+M
Sbjct: 11 RHVRIVGSALLIAGMTAAGTAPAAANSKYAGIVVDAKTGKTLYADSADAYRYPASLTKIM 70
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+VF L+ + L + +SKNAS+ PPS + G T+ + +A+ L+ KSAND+A
Sbjct: 71 TLYIVFEELEAGRLSLNSKFKVSKNASKEPPSKIGLRPGQTIKVKDAILALVTKSANDVA 130
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+AE++ +E KF + M NT++ LG+ T F NAHG+ TTARDM+ L I+
Sbjct: 131 TTVAENIAGSEAKFAKRMTNTARQLGMKRTTFRNAHGLPNSRQRTTARDMSRLGIAIQER 190
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+Y YF + KG++Y N N +G G DG+KTG+ ASGFN+V S + + ++
Sbjct: 191 FPKYYKYFNTRVYSYKGRRYGNHNKLLGRVKGVDGIKTGYIRASGFNLVTSVNRNGRHIV 250
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AV++G +RN+ +L+ + + +K ++ +Q + + +
Sbjct: 251 AVVMGGRTGASRNRHMTNLIGRYLHKASKGRKSAPLVAKVKRQPAFVAASMKNVPMPNGK 310
Query: 301 KEIINYNTQMKEAKDKESHF 320
T A +
Sbjct: 311 PGSKTIKTSPVLALASATPK 330
>gi|319405849|emb|CBI79481.1| Penicillin-binding protein [Bartonella sp. AR 15-3]
Length = 449
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 94/324 (29%), Positives = 164/324 (50%), Gaps = 4/324 (1%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
++ + + + ++S+ + + E + ++D NTG + + PASLTK+M
Sbjct: 13 KKVGISLTLLVISHSWAVATPKEAHPDKYAAIVIDANTGKTLFQANAALKRYPASLTKMM 72
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y++F +K + TPI IS A+ PP+ K G T++++ A K LI KSAND+A
Sbjct: 73 TVYMIFEAIKNGRVTPNTPIPISNYAATRPPTKIGIKAGQTISIEAATKALITKSANDVA 132
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
AI E L +E+KF Q M ++ LG+ T F NA G+ +Y+TA+D+A L+ ++
Sbjct: 133 AAIGEYLGGSEQKFAQMMTIKARKLGMKNTRFANASGLPDTRNYSTAQDIATLALALRKH 192
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP+ F+ +G+ N N + T G DG+KTG+T SG N+ S +S++
Sbjct: 193 FPEQYKLFKTTHFTFRGQTINNHNTLIKTIKGVDGIKTGYTQMSGSNLATSMRIDGRSIV 252
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE---VPNISEEVC 297
AV++G TRN A+LL + + ++ + + + +P I + +
Sbjct: 253 AVVMGGKSSTTRNIHMANLLKQYLPKTSRIETNKNLVATVHYKLPTVSATPIPIIKDNLI 312
Query: 298 TTQKEIINYNTQMKEAKDKESHFI 321
+ EI + T + E + + +
Sbjct: 313 NSDDEISSLLTALAEQSNDPNTAV 336
>gi|261214059|ref|ZP_05928340.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
str. Tulya]
gi|260915666|gb|EEX82527.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 3
str. Tulya]
Length = 416
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 77/253 (30%), Positives = 127/253 (50%), Gaps = 1/253 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A ++ L + + + D ++G ++ ++ PASL K+MT Y+ F
Sbjct: 24 FFASVAFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEA 83
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 84 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 143
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 144 GSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYAL 203
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA
Sbjct: 204 FSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAG 263
Query: 248 DRNTRNKVSASLL 260
R+ A LL
Sbjct: 264 SAGQRDGQMAKLL 276
>gi|323704094|ref|ZP_08115696.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Desulfotomaculum nigrificans DSM 574]
gi|323530944|gb|EGB20881.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Desulfotomaculum nigrificans DSM 574]
Length = 373
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 72/333 (21%), Positives = 133/333 (39%), Gaps = 31/333 (9%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ L++ TG + D PASLTK+MTA + L +T
Sbjct: 16 QPPKVRASAACLMEVATGRIYFAKQGDKRREPASLTKIMTAILAIEK-----GNLKDVVT 70
Query: 82 ISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ K A+ + G + L++ LK ++ SAND VAI E + + F++ MN+
Sbjct: 71 VGKKAAAVSMGQDIGLSPGDRLYLEDLLKAALMYSANDSTVAIGEHIAGSHDAFIKMMND 130
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF------------------P 182
+K LG+ T + N +G HYTTA D+A L+ +
Sbjct: 131 KAKVLGMKDTRYANTNGYHNPNHYTTAIDLAKLTCYALKNPVFASFVRTREATITWLPKE 190
Query: 183 QYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + +++ + + NTN F G +G+KTG T +G ++ASA + + L+A
Sbjct: 191 KTGNPQEVQTETPRQRVIHNTNALLESNFEGINGVKTGTTPRAGKCLIASATREGRQLVA 250
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCT 298
V+L + + R + +LL GF + + + + +V ++ +
Sbjct: 251 VVLNSPN---RWDDATNLLEYGFREFRPQVLSEKDEVMGEIPVVEGVEQKVTLVAAKKVE 307
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
I+ + ++ ++ L
Sbjct: 308 AYVARIDSDKVERKINLAPPPKAPIKQGIKLGK 340
>gi|110632991|ref|YP_673199.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
sp. BNC1]
gi|110283975|gb|ABG62034.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans
sp. BNC1]
Length = 287
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 86/263 (32%), Positives = 136/263 (51%), Gaps = 5/263 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKL-----PYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+L I + +S ++A + ++D +G ++ + D P PASLTK
Sbjct: 13 WLAFIVLPFVSGCGSTSAVAPLVQPIESEKYSSIVVDAGSGEILHQYAADAPRYPASLTK 72
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT Y++F + T+ IT S A+ PPS + G + + A+ L VKSAND
Sbjct: 73 MMTLYLLFEAIDSGILSPTSRITASAYAASRPPSKLGLRPGDSFDVQTAILALCVKSAND 132
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A A+AE L TE++F M ++ LG+ +T F NA G+ G TTARDMA+L+ +
Sbjct: 133 VAAAVAEHLGGTEQQFAGMMTAKARQLGMRSTVFTNASGLPDSGQMTTARDMALLALALH 192
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FP + H F + +G+ N +G G DG+KTG+ ASG+NI SA +G +
Sbjct: 193 NRFPHHYHVFANQSFAHEGRTIKGHNDLLGRVDGVDGIKTGYIRASGYNIATSAARGRKR 252
Query: 239 LIAVILGALDRNTRNKVSASLLS 261
++ +++G +RN LL
Sbjct: 253 IVVIVMGGDTARSRNAHVERLLE 275
>gi|158320612|ref|YP_001513119.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
OhILAs]
gi|158140811|gb|ABW19123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus oremlandii
OhILAs]
Length = 371
Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats.
Identities = 80/350 (22%), Positives = 137/350 (39%), Gaps = 23/350 (6%)
Query: 1 MR-QFLVIIAMAMLSNIFPFLSIAE----TNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR + I + M+ P + ++D TG ++ E AS
Sbjct: 1 MRERVFCFIIIFMMLMANPSYGQEKMKNIQTGGKSAIVMDVETGRILYEKNMHLKLPMAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK+MTA + L + I++NA S+ + + + + L+++S
Sbjct: 61 TTKIMTALLAIEN-----IPLEKRVKINQNAQGIEGSSIYLRANEEVKAIDLVYGLMLRS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND A AIA + + + F MN + +G T+F N HG+ HYTTA D+A+++
Sbjct: 116 GNDAAAAIAYEVSGSIEAFADLMNERANKIGAKNTNFTNPHGLHHENHYTTAYDLALITR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYP---NTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ + + K +Y N N + G DG+KTG+T SG +V+SA
Sbjct: 176 EALKN-SVFKEVVKTKFWTADRNEYKHFANKNIGLEICEGGDGVKTGYTTRSGRCLVSSA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN------KTDRKKINYIIKDFYQQNLS 286
+ I++ L D + LL GF T+ + I + ++N
Sbjct: 235 SREGMQFISITL---DDYNWFDTNKKLLDEGFKRYRPHHIFTEEQVITSMKVLNGKKNTV 291
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
PN V ++ E+ T + E+ KI + + K
Sbjct: 292 FIKPNRGLIVPLSEGELERLLTVINAPDTLEAPLEKGSKIGTMVTYLDGK 341
>gi|322374431|ref|ZP_08048945.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C300]
gi|321279931|gb|EFX56970.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C300]
Length = 413
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 69/366 (18%), Positives = 143/366 (39%), Gaps = 32/366 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++ + + + + + ++ TG ++ E + P AS+TKL
Sbjct: 1 MKKIILSFMTLFVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L++ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 VTVYLVYEALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNYTVEQLLEATMVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + D+PQ + + G + +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A ++T R +++LL N + +
Sbjct: 241 GTTDKAGASFVGTTVEKGMRIITVVLNADQQDTNLYARFTATSALLDYISANFALKTVVQ 300
Query: 275 YI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
N ++ Q+ ++ S E+ +
Sbjct: 301 KGETYNDSKVTVLDGKEDNVTAVAKSDISIVQRIGSGTTPTLQFTPKSTSEMAPLEEGKV 360
Query: 329 LKNKIT 334
+
Sbjct: 361 VGTLTY 366
>gi|306829382|ref|ZP_07462572.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus mitis ATCC
6249]
gi|304428468|gb|EFM31558.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus mitis ATCC
6249]
Length = 413
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 71/366 (19%), Positives = 142/366 (38%), Gaps = 32/366 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++ ++ + I + + + ++ TG V+ E P AS+TKL
Sbjct: 1 MKKIIISLLTLLTFGTISTISAQSFDIAAKHAIAVEATTGKVLYEKDASQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L++ L+TP+ IS +++ + T++ L+ +V SA
Sbjct: 61 VTVYLVYEALEQGTISLSTPVDISDYPYHLTTNSEASNVPMEARNYTVEQLLEATMVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + D+PQ + + G + +TN + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIRDYPQVLEITKKASSTFAGLEIHSTNSMLEGMPAYRGGIDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SLL N T + +
Sbjct: 241 GTTDKAGASFVGTTVEKGMRIITVVLNADQQDGNPYARFTATSSLLDYISANFTLQTVVK 300
Query: 275 YI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ ++ Q+ + ++ S E+ +
Sbjct: 301 KGETYKDSKVTVLDGKEDSVPAVAKSDIAVVQRVGSGTTSALQFTPKSTSETAPLEEGKV 360
Query: 329 LKNKIT 334
+
Sbjct: 361 VGTLTY 366
>gi|38142333|dbj|BAD00969.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
Length = 413
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTISLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLRDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VAHLTYE 367
>gi|218682277|ref|ZP_03529878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894]
Length = 408
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 74/337 (21%), Positives = 132/337 (39%), Gaps = 8/337 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + + K +++ TG V+ D ++PASL KLMT
Sbjct: 20 LAWLMPFTAAALAADSGAAGFATKAEQAYMIEAATGTVLLAKNEDQGFSPASLAKLMTMD 79
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSAND 118
+VF + + + L T +S+ A + S + +++ +K + ++ AND
Sbjct: 80 LVFEAVTKGQITLDTEYPVSEYAWRTGGAPSRAATMFASLKSRVRVEDLIKGVAIQGAND 139
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+ +AE + TE++F + M ++ LG+ F N+ G+ TAR+M L+ ++
Sbjct: 140 SCIILAEGMAGTEQQFAESMTRRARELGMEKAEFGNSTGLPDGKSKVTAREMVTLATALQ 199
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+P YF E N N +G LGADG+ TGFT G++IVAS + +
Sbjct: 200 QSYPNLYPYFAQPDFEWNKIFQRNRNPLLGLDLGADGLATGFTEGEGYSIVASVERDGRR 259
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEE 295
L + G R + + +L G R+ I + V I++
Sbjct: 260 LFLALAGIASDKERTEEAKRVLEWGLTAFESRQIFAEKEVIGAASVYGGTARTVDLIAKA 319
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ I N + + E T
Sbjct: 320 PVSVYIPISNPDRLSARIVYRWPLTAPVEADTQAGTL 356
>gi|319408389|emb|CBI82044.1| penicillin-binding protein [Bartonella schoenbuchensis R1]
Length = 449
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 88/292 (30%), Positives = 146/292 (50%), Gaps = 2/292 (0%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ +V + + + + + ++D +TG + + PASLTK+M
Sbjct: 13 KGIVTTFIVLTISYSSAKATPKEAYPDKYAAIVIDAHTGKTLFQANATLKRYPASLTKMM 72
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y++F ++ ++ TPI IS A+ PP+ FK G T++++ A K LI KSAND+A
Sbjct: 73 TLYMLFEAMEVRRVTPNTPIPISAYAAARPPTKIGFKAGQTISVEEAAKALITKSANDVA 132
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+ E L +E KF + M ++ LG++ T F NA G+ +Y+TA+DMA L+ ++
Sbjct: 133 TAVGEYLGGSEPKFARMMTVKARKLGMTNTRFANASGLPDARNYSTAKDMATLALALRKH 192
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQ F+ +GK N N V T G DG+KTG+T SG N+ S +S++
Sbjct: 193 FPQQYKLFKTTSFSFRGKTINNHNKLVKTIKGVDGIKTGYTQMSGSNLATSMHIEGRSIV 252
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
AV++G R+ +LL+ + +K Y++ + I
Sbjct: 253 AVVMGGKSSTERDIHMTNLLNRYLPRASRKKTNGYLVAAVSYNLPTGAATPI 304
>gi|241668486|ref|ZP_04756064.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254877020|ref|ZP_05249730.1| D-alanyl-D-alanine carboxypeptidase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|254843041|gb|EET21455.1| D-alanyl-D-alanine carboxypeptidase [Francisella philomiragia
subsp. philomiragia ATCC 25015]
Length = 444
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 84/369 (22%), Positives = 138/369 (37%), Gaps = 60/369 (16%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P + ++ TG ++++ D PASLTK+MT+Y+V S +K T + IS+
Sbjct: 51 ELDAPAWVAMNYRTGDIVSQKNMDVRRPPASLTKIMTSYIVASEIKAGNLSWDTMVPISE 110
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ S K G+ +++ N + + V S ND +A+AE + T + F MN T+K
Sbjct: 111 KAASTGGSKMYVKAGAKVSVKNLVTGMDVVSGNDATIALAEYIGGTAEAFTDLMNQTAKA 170
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199
+G++ THF N G+ YTTA DMA+L+ +FP + +GL +
Sbjct: 171 IGMNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPDAYKIYDDRGLVWNATQQESVS 230
Query: 200 -----------------------------------------------YPNTNWAVGTFLG 212
N N + TF G
Sbjct: 231 IADRKQCLPKFDRSSGNVLESFSAKGLDSQAQDKCSKLFPKGDNFVLQNNRNRLLFTFDG 290
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
ADGMKTG T A+G+ +V+SA Q + I+V+LG R+ S+ LL +
Sbjct: 291 ADGMKTGHTDAAGYCLVSSAKQDGERFISVVLGTSSSAKRDSESSKLLRYAISKYENVLL 350
Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK-------ESHFIDFEK 325
+ +++ + I +K
Sbjct: 351 YKAN-SPVTISADNIPNAKAGQKITVASTQNIYQTVPKTYIPFLKQGIVFTPGIKAPIKK 409
Query: 326 ITLLKNKIT 334
+ +
Sbjct: 410 GQTVGELVI 418
>gi|49475609|ref|YP_033650.1| penicillin-binding protein [Bartonella henselae str. Houston-1]
gi|49238416|emb|CAF27643.1| Penicillin-binding protein [Bartonella henselae str. Houston-1]
Length = 387
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 87/355 (24%), Positives = 137/355 (38%), Gaps = 20/355 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
MR L I AE L+D +T V+ E D P+ PASL K
Sbjct: 1 MRTVLRIFFTLFWMLTLDGRGKAEDFQTSAQQLLLVDDDTDTVLFEKQSDIPFFPASLAK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIV 113
LMTA V+F LKE T +S+NA + K + +++ + L+ LI+
Sbjct: 61 LMTAEVIFHQLKEGLLSNTQTFKVSENAWRKGGAPSGTTTMFAKVKTEISVSDLLRGLII 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+ ND A+ +AE + +E F + MN +K LGL ++F+N G+ + + T RDM L
Sbjct: 121 VNGNDAAITLAEGVSGSEADFAKLMNQRAKALGLEHSYFVNPTGLPEEEQFVTLRDMMTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ I +P Y ++ N N + +G +G G++ GF++V +A
Sbjct: 181 TRHIARAYPNYYILYREPHFTWNKIFQRNKNPLISKEIGVEGFGFGYSEEEGFSMVVAAY 240
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVP 290
+ + L I G + K +L G + N VP
Sbjct: 241 KNHRHLFLAINGLQNGKGHTKEIERILQWGMTAFDLKTIFTKGETVGHASVYGGEQNSVP 300
Query: 291 NI---------SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
I S E K I Y +K + +I K + +K
Sbjct: 301 LIVKGPIRFMLSNEKKVDVKAKIKYRGPLKAP-IILGQPVGVIQILQDKKVLLEK 354
>gi|110633724|ref|YP_673932.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mesorhizobium
sp. BNC1]
gi|110284708|gb|ABG62767.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Chelativorans
sp. BNC1]
Length = 465
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 100/288 (34%), Positives = 154/288 (53%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+ ++A+A + + + A N ++D TG V+ E+ D PASLTK+MT Y+
Sbjct: 36 IAVLAVATGAFVLSLAASAAANPKYAGIVIDAKTGQVLYEDSADELRYPASLTKMMTLYL 95
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
VF + + +T IT SKNAS PP+ G ++T++ A+ LI +SAND A AIA
Sbjct: 96 VFESMAAGRISKSTSITFSKNASAEPPTKLGVPAGKSITVEQAILALITRSANDAATAIA 155
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E L +E+ F + M ++ LG+ +T F NAHG+ + TTARDMA L ++ +PQY
Sbjct: 156 EKLGGSEESFARMMTAKARQLGMKSTTFRNAHGLPNNAQKTTARDMARLGIALREHYPQY 215
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
YF + GKK N +G GADG+KTG+ ASGFN+V+S G + ++AV++
Sbjct: 216 YDYFSTRSFVFSGKKINGHNNLLGRVKGADGIKTGYINASGFNLVSSVSTGGRQIVAVVM 275
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
G +R+ SL+ + + + I K + + P I
Sbjct: 276 GGKTARSRDAHMVSLIERYLPKASTGRGQDLIAKGPAIRPTITDTPAI 323
>gi|56708118|ref|YP_170014.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
family protein [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110670589|ref|YP_667146.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
family protein [Francisella tularensis subsp. tularensis
FSC198]
gi|134301929|ref|YP_001121898.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
tularensis subsp. tularensis WY96-3418]
gi|224457209|ref|ZP_03665682.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
tularensis subsp. tularensis MA00-2987]
gi|254370602|ref|ZP_04986607.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
tularensis FSC033]
gi|254874916|ref|ZP_05247626.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|56604610|emb|CAG45662.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein)
family protein [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110320922|emb|CAL09045.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein)
family protein [Francisella tularensis subsp. tularensis
FSC198]
gi|134049706|gb|ABO46777.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
tularensis subsp. tularensis WY96-3418]
gi|151568845|gb|EDN34499.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
tularensis FSC033]
gi|254840915|gb|EET19351.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159318|gb|ADA78709.1| D-alanyl-D-alanine carboxypeptidase family protein [Francisella
tularensis subsp. tularensis NE061598]
Length = 444
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 94/372 (25%), Positives = 147/372 (39%), Gaps = 58/372 (15%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
P + +D TG +++E D PASLTK+MT+Y+V S +K T I
Sbjct: 47 PANIELDAPAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMI 106
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
IS+NA+ S K G+ +++ N + + V S ND +A+AE + T + F MN
Sbjct: 107 PISENAASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQ 166
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199
T+K +G++ THF N G+ YTTA DMA+L+ +FP+ + KGL K
Sbjct: 167 TAKAIGMNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQ 226
Query: 200 ---------------------------------------------------YPNTNWAVG 208
N N +
Sbjct: 227 DSVSIADRKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLF 286
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
TF GADGMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL
Sbjct: 287 TFDGADGMKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYE 346
Query: 269 DRKKINY-----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE-AKDKESHFID 322
+ I D + + ++ + Y +K+ + +
Sbjct: 347 NVLLYKANSPVTISADNIPNAKAGQKLTVASNQNIYKTVPKTYVPYLKQGIEFNPNLNAP 406
Query: 323 FEKITLLKNKIT 334
+ + N +
Sbjct: 407 IKTGQTVGNLVI 418
>gi|167627934|ref|YP_001678434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|167597935|gb|ABZ87933.1| Serine-type D-Ala-D-Ala carboxypeptidase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
Length = 444
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 84/369 (22%), Positives = 138/369 (37%), Gaps = 60/369 (16%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P + ++ TG ++++ D PASLTK+MT+Y+V S +K T + IS+
Sbjct: 51 ELDAPAWVAMNYRTGDIVSQKNMDVRRPPASLTKIMTSYIVASEIKAGNLSWDTMVPISE 110
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ S K G+ +++ N + + V S ND +A+AE + T + F MN T+K
Sbjct: 111 KAASTGGSKMYVKAGAKVSVKNLVTGMDVVSGNDATIALAEYIGGTAEAFTDLMNQTAKA 170
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199
+G++ THF N G+ YTTA DMA+L+ +FP + +GL +
Sbjct: 171 IGMNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPDAYKIYDDRGLVWNATQQESVS 230
Query: 200 -----------------------------------------------YPNTNWAVGTFLG 212
N N + TF G
Sbjct: 231 IADRKQCLPKFDRSSGNVLESFSAKGLDSQAQDKCAKLFPKGDNFVLQNNRNRLLFTFDG 290
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
ADGMKTG T A+G+ +V+SA Q + I+V+LG R+ S+ LL +
Sbjct: 291 ADGMKTGHTDAAGYCLVSSAKQDGERFISVVLGTSSSAKRDSESSKLLRYAISKYENVLL 350
Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK-------ESHFIDFEK 325
+ +++ + I +K
Sbjct: 351 YKAN-SPVTISADNIPNAKAGQKITVASTQNIYQTVPKTYIPFLKQGIVFTPGIKAPIKK 409
Query: 326 ITLLKNKIT 334
+ +
Sbjct: 410 GQTVGELVI 418
>gi|42523517|ref|NP_968897.1| hypothetical protein Bd2044 [Bdellovibrio bacteriovorus HD100]
gi|39575723|emb|CAE79890.1| dacA [Bdellovibrio bacteriovorus HD100]
Length = 286
Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats.
Identities = 87/256 (33%), Positives = 139/256 (54%), Gaps = 8/256 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ K + LLD ++G ++AE D PASLTK+MTAY+VFS ++E + + +S
Sbjct: 28 PSVKALSWVLLDASSGQILAELNKDQRLPPASLTKVMTAYMVFSEIREGRLSRMDRVKVS 87
Query: 84 KNASEYPPS--NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ A P + + G +T++ L+ LIV SAND A+ +AE + ++K F + MN T
Sbjct: 88 EQAIIRRPEESSMYLRVGEFVTVEELLRGLIVASANDAALVLAEVVSGSQKAFTEQMNKT 147
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
++ LG++ + F N+ G+ HY+TA+D+ +L+ RI +FP+Y Y K L +
Sbjct: 148 AQKLGMTQSLFANSSGLYTEKHYSTAKDLGLLAVRISQEFPEYFEYSSSKELTFRDFHKK 207
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ------SLIAVILGALDRNTRNKV 255
NTN + + L DGMKTG A+G+ ++ SA + + IAV+LGA R
Sbjct: 208 NTNDLLFSKLPVDGMKTGHIKAAGWCVMVSARKNKRPDKKSERYIAVVLGAPSNQDRFVA 267
Query: 256 SASLLSMGFYNKTDRK 271
+LL F + K
Sbjct: 268 GRALLEFAFSQPSTFK 283
>gi|229087877|ref|ZP_04219989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
gi|228695432|gb|EEL48305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
Length = 426
Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats.
Identities = 88/374 (23%), Positives = 144/374 (38%), Gaps = 39/374 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET-----NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR+ L I+ +LS ++ + + L D +TG ++ E PD AS
Sbjct: 3 MRKILSILLAFLLSFSSLGVTTSHAEEKIHIEAAAAILFDADTGKILHEQNPDELLAIAS 62
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KL+ Y V +KE K T + IS A E +N +K L
Sbjct: 63 MSKLIVVYSVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVKELYHSI 122
Query: 116 ANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
A + +L + +EK F+ N +K LGL F+NA G+
Sbjct: 123 VIFSANGSSIALAELLAGSEKNFLNLANEYAKKLGLKKYKFVNATGLNNADLKGKHPEGT 182
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA----VG 208
+ +ARDM ILS I T +P+ + + + K + N NW
Sbjct: 183 DPNGENSLSARDMGILSKIIITKYPEMLADTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 242
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF N
Sbjct: 243 AYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTESRELIDYGFNNFE 302
Query: 269 DRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE---SHFI 321
+K K N I +++ P V T + +Y + K
Sbjct: 303 KQKLKIDKNNTISVVKGKEDTVTVTPEKEITVITQKGSKPSYKISTEADKSLAEDGKLVA 362
Query: 322 DFEKITLLKNKITK 335
+K + + + +
Sbjct: 363 PIKKDAKVGSFVLE 376
>gi|229542251|ref|ZP_04431311.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
coagulans 36D1]
gi|229326671|gb|EEN92346.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
coagulans 36D1]
Length = 468
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 79/370 (21%), Positives = 139/370 (37%), Gaps = 41/370 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
FL ++ A + P A+ ++D + G ++ E + AS++K+M
Sbjct: 41 FLALLLTAGVVQQVPKTVHAQDQLDIHAKAAIIVDADNGQILYEKNANQALGIASMSKMM 100
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALKLLIVKSA 116
T Y++ + EKK +TIS A + N +KG T+ + + + SA
Sbjct: 101 TEYLLLKAIHEKKVSWNQKVTISDYAYRISQNRALSNVPLRKGEKYTVKELFQAMAIYSA 160
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------- 162
N +AIAE+L TEK ++ MN +K GL+ F+NA G+
Sbjct: 161 NGATIAIAETLGGTEKNYLNMMNKQAKAFGLTDYKFVNATGLNNEDLQGMQPEGTGRTEE 220
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWA----VGTFLGA 213
+ +A+ +A +++ + D+P+ + ++ + N NW V G
Sbjct: 221 NLVSAKSVAKIAYHLIHDYPEILQTTSTAKMKFRAGTDDEIAMQNWNWMLPSLVYGRQGV 280
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN------TRNKVSASLLSMGFYNK 267
DG+KTG T +G+ +A Q +I V+L A D N +R V+ L+ F N
Sbjct: 281 DGLKTGNTDNAGYCFTGTAKQNGMRIITVVLHAEDANGNSTIKSRFDVTNKLMDYAFSNF 340
Query: 268 TDRKKINYI-----IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T++ + K D +
Sbjct: 341 TEKTLYPKGYQVKKTVTVKSGKEKQASVVTKAPLKVAVKNGEGKMYTPVVKFDSKQIKAP 400
Query: 323 FEKITLLKNK 332
+K T +
Sbjct: 401 VKKGTKVGTL 410
>gi|240850298|ref|YP_002971691.1| penicillin-binding protein [Bartonella grahamii as4aup]
gi|240267421|gb|ACS51009.1| penicillin-binding protein [Bartonella grahamii as4aup]
Length = 449
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 92/308 (29%), Positives = 152/308 (49%), Gaps = 4/308 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+ + +A ++D TG + + PASLTK+MT Y+
Sbjct: 17 ISFVVLAFSYCWASATPQGAYPDKYAAIVIDATTGKTLFQANATLKRYPASLTKMMTLYL 76
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+F ++ ++ TPI +S A+ PP+ FK G T++ ++A K LI +SAND+A AIA
Sbjct: 77 LFEAMQMRRVTPNTPIPVSHYAAMRPPTKIGFKAGQTISAESAAKALITRSANDVAAAIA 136
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E L +EKKF Q M ++ LG+ THF NA G+ +Y+TARD+A LS ++ FP+
Sbjct: 137 EYLGGSEKKFAQMMTIKARKLGMKHTHFANASGLPDVHNYSTARDIATLSLALRKHFPKQ 196
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F+ K +G K + N V G DG+KTG+T SG N+ S +S++AV++
Sbjct: 197 YKLFKTKSFNFRGHKINSHNKLVKIMKGVDGIKTGYTQMSGSNLATSMRLDGRSVVAVVM 256
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
G R++ ASLL+ + K ++ + + + T + +
Sbjct: 257 GGKSSTARDEHMASLLNQYLPKASQMKSGERLMASV----RYHLPTGANTPIPTIKADSS 312
Query: 305 NYNTQMKE 312
N++ ++
Sbjct: 313 NFDDEIST 320
>gi|170747224|ref|YP_001753484.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
radiotolerans JCM 2831]
gi|170653746|gb|ACB22801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
radiotolerans JCM 2831]
Length = 489
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 90/305 (29%), Positives = 162/305 (53%), Gaps = 8/305 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D +G + D +PAS+TK+MT Y++F ++ K L + +TIS +A+
Sbjct: 53 AAMVVDVKSGKTLHAVNEDALRHPASITKVMTLYLLFEQMERGKFALDSDLTISAHAAAQ 112
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
PS + G T+++++A+K ++ KSAND+A AI E++ +E++F Q M + LG+S
Sbjct: 113 APSKLGLRPGQTISVEDAIKAIVTKSANDVACAIGENIAGSEERFAQMMTAKAHALGMSR 172
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
TH+ NA G+ TTARD+ +L+ I+ FP Y YFQ + +G+ N N +G
Sbjct: 173 THYANASGLPDPEQLTTARDLTVLARAIQDRFPHYYRYFQTRSFAFRGRVIGNHNHLLGN 232
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
G DG+KTG+T SGFN++ +A + ++A++LG R+++ A L+
Sbjct: 233 VQGVDGIKTGYTRDSGFNLMTAAKSEGRQIVAIVLGGKSGAGRDRIMADLVRSSLPRAYA 292
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+I+ + + ++ V + V T+ ++ + + +D E+ E + L
Sbjct: 293 GARISAPVTEVAERARPAVVADA---VSRTRTQVASADD-----EDVETTGTTGEPLDLS 344
Query: 330 KNKIT 334
+K T
Sbjct: 345 PSKTT 349
>gi|220931566|ref|YP_002508474.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H
168]
gi|219992876|gb|ACL69479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Halothermothrix orenii H
168]
Length = 377
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 71/307 (23%), Positives = 131/307 (42%), Gaps = 20/307 (6%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG V+ + +H PAS TK++T + + L +T+S+ A+ S+ +
Sbjct: 45 TGQVLYNHRMNHKLPPASTTKILTTIIAIEEGE-----LNEMVTVSRRAAYQEGSSIWLQ 99
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+G + L++ L +++ S ND AVA+AE + + KKF + MN +K +G + ++F+N G
Sbjct: 100 EGEKLPLEDLLYGVMLASGNDAAVAVAEHISGSVKKFSELMNKRAKEIGATNSNFLNPSG 159
Query: 158 VVQHGHYTTARDMAILSWRIKTDF------PQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ Q GHY+TA D+A++ + G E N N + +
Sbjct: 160 LPQSGHYSTAHDLAMIMRYALKNDIFARITSTKYKTISWPGKEWDRG-LRNHNKLLWKYP 218
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
G KTG+T A+G +VASA + ++ ++AV+L + LL G N +
Sbjct: 219 DITGGKTGYTRAAGRCLVASAKRDNRHVVAVVLNCPND---WVEIRKLLDYGLNNFKKIR 275
Query: 272 KINYIIKDFYQQNLSNEVPNIS----EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
I + + E++ E + + + + + K
Sbjct: 276 YIKKGQVLRTLEWTRSREKTFKLVTGEDLDIVVPEGGSIKIKKEIVLN-PDITLPINKGD 334
Query: 328 LLKNKIT 334
++ I
Sbjct: 335 VVGELIL 341
>gi|187931647|ref|YP_001891631.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712556|gb|ACD30853.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 444
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 94/372 (25%), Positives = 147/372 (39%), Gaps = 58/372 (15%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
P + +D TG +++E D PASLTK+MT+Y+V S +K T I
Sbjct: 47 PANIELDAPAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMI 106
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
IS+NA+ S K G+ +++ N + + V S ND +A+AE + T + F MN
Sbjct: 107 PISENAASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQ 166
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199
T+K +G++ THF N G+ YTTA DMA+L+ +FP+ + KGL K
Sbjct: 167 TAKAIGMNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQ 226
Query: 200 ---------------------------------------------------YPNTNWAVG 208
N N +
Sbjct: 227 DSVSIADRKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLF 286
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
TF GADGMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL
Sbjct: 287 TFDGADGMKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYE 346
Query: 269 DRKKINY-----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE-AKDKESHFID 322
+ I D + + ++ + Y +K+ + +
Sbjct: 347 NVLLYKANSPVTISADNIPNAKAGQKLTVASNQNIYKTVPKTYVPYLKQGIEFNPNLNAP 406
Query: 323 FEKITLLKNKIT 334
+ + N +
Sbjct: 407 IKIGQTVGNLVI 418
>gi|125973746|ref|YP_001037656.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
ATCC 27405]
gi|256005750|ref|ZP_05430704.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
thermocellum DSM 2360]
gi|281417903|ref|ZP_06248923.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
thermocellum JW20]
gi|125713971|gb|ABN52463.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium thermocellum
ATCC 27405]
gi|255990284|gb|EEU00412.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
thermocellum DSM 2360]
gi|281409305|gb|EFB39563.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
thermocellum JW20]
gi|316940059|gb|ADU74093.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
thermocellum DSM 1313]
Length = 432
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 88/350 (25%), Positives = 143/350 (40%), Gaps = 28/350 (8%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
SNI + Y L+D+ TG V+AE+ PD PAS TK+MTA +
Sbjct: 15 FSNIVTLKAQPLDINAQAYILIDSKTGQVLAEHNPDLRTYPASTTKIMTAILALELGDLN 74
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ M + I + + G + L L L+V+SAN+ A IAE+LC + +
Sbjct: 75 QIMTVSQSAI--DDIGPGGMHIGLLPGEQLELRYLLDALLVRSANETAYVIAENLCSSRE 132
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQ----HGHYTTARDMAILSW--RIKTDFPQYMH 186
+F + MN ++ LG + T+F+N G+ H TTARD+A ++ +F + +
Sbjct: 133 EFYRLMNEKARELGATNTNFVNPCGIDNGEKGKNHLTTARDLAKIAQYAMTIPEFREIVQ 192
Query: 187 YFQIKGLEIKGKK-------------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
IK Y N+ + + G+KTG+T + N+V+SA+
Sbjct: 193 KTIIKIPPTNKHAEEVIVGTTNKLLLYSNSKYKSEHYTKITGIKTGYTDRALNNLVSSAV 252
Query: 234 QG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
LIAV+LG + + + S LL GF N + + I L +
Sbjct: 253 NDEGTELIAVVLGVENYDMVFEYSKMLLEYGFKNYSVQPVIAPNSYITSVPVLKAAGNHN 312
Query: 293 SEEVCTTQ------KEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + + + N E E+ +K +L KK
Sbjct: 313 LDILASPEGLKCLLPNNSTKNDYEIEQHILENIEAPVKKGDVLGYIEVKK 362
>gi|114704618|ref|ZP_01437526.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein
[Fulvimarina pelagi HTCC2506]
gi|114539403|gb|EAU42523.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein
[Fulvimarina pelagi HTCC2506]
Length = 396
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 74/346 (21%), Positives = 141/346 (40%), Gaps = 17/346 (4%)
Query: 2 RQFLVIIAMAMLSN-------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R L A+ L++ + + P L++ TG VI + P+ PA
Sbjct: 5 RPLLAAFAILSLTSHVTQAQEGAAANAYGLQTEAPRALLVEDRTGTVILDKNASEPFAPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALK 109
SL KLMT +VF LK + ++T ++++A + S + + + ++
Sbjct: 65 SLAKLMTMEIVFEALKAGEISMSTEYAVTEHAWRTGGAPSGAATMFAAINSRIPVADLIR 124
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTA 167
I++ AND A+ +AE + +E++F + MN ++ LGL T + N G+ TTA
Sbjct: 125 GTIIQGANDGAIILAEGMFGSEEEFTERMNARAEELGLDDTRYANPTGLPTEEGEQQTTA 184
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
RD+ L+ ++++ P+ + E N N + LG +G+ TG+T ASG++
Sbjct: 185 RDLVTLTRHLRSEHPELYKIYAEPAFEWNKIFQRNRNPVLREELGGEGVGTGYTEASGYS 244
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQN 284
++ +A +G ++ + + G R + LL GF + + K
Sbjct: 245 LMGAASKGGRTFLVALSGLESSAAREAEAQRLLEFGFDRLIEADVLEAGAKLGEVPVFNG 304
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ VP ++ + + E +
Sbjct: 305 VVETVPVRIDQPIAILLPEEALEEVSARLRFEGPVIAPVEPGDRIG 350
>gi|15615440|ref|NP_243743.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Bacillus halodurans C-125]
gi|10175498|dbj|BAB06596.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Bacillus halodurans C-125]
Length = 395
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 76/293 (25%), Positives = 125/293 (42%), Gaps = 26/293 (8%)
Query: 1 MR---QFLVIIAMAMLSNIFPFLSIAET--------------NKLPYYTLLDTNTGHVIA 43
MR + +++ + +S F + A L+D +G V+
Sbjct: 1 MRHLFRVFILLFLFFVSLQFSVQTNASAFVSEGETLNDAHFHLNSESVLLMDQLSGQVLY 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
+ D PAS+TK++TA + L +T+SK A+E + +G +T
Sbjct: 61 SEHGDKKMYPASITKIITALIAIEEGD-----LDDIVTVSKTATEVIGTRVYLVEGEEVT 115
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK-NLGLSATHFMNAHGVVQHG 162
L ++ L++ S ND AIAE E+ F + MN + +G+ THF N HG+
Sbjct: 116 LRKLVQGLMINSGNDAGTAIAEHFDGNEEAFAERMNRFVQVKIGVENTHFTNPHGLFDKE 175
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG---KKYPNTNWAVGTFLGADGMKTG 219
HYTTA DMA+++ + + I N + + + G G+K G
Sbjct: 176 HYTTAYDMAMITKYAMENEKFRDVASTKELEWIGEGWETTIYNHHRLLWDYPGTTGVKNG 235
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
+ SG+ +V +A + DQ LIAV L A + + +LL GF + K
Sbjct: 236 YVSQSGYTLVTTAERDDQQLIAVTLNAPGASFSYNDTMTLLDYGFEHFKTEKI 288
>gi|253682095|ref|ZP_04862892.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
str. 1873]
gi|253561807|gb|EES91259.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
str. 1873]
Length = 412
Score = 163 bits (411), Expect = 4e-38, Method: Composition-based stats.
Identities = 86/329 (26%), Positives = 143/329 (43%), Gaps = 22/329 (6%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
T L+D NTG ++ D + PAS TK+MTA + L +T
Sbjct: 27 TPPTASADGVVLMDKNTGQILYSKNLDTQYPPASTTKIMTALLTLENS-----NLNDVVT 81
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ KNA S +G +T+ + L L+++SAND A+A++E + + K+FV MN
Sbjct: 82 VGKNAVNVDGSKVYLFEGEKLTIKDLLHALLLQSANDSAIALSEHVSGSTKEFVNLMNKR 141
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP------QYMHYFQIKGLEI 195
+K LG T+F+N HG+ H TTARD+ ++ + M+Y E
Sbjct: 142 AKELGCKHTNFVNPHGLYDDKHRTTARDLGLILRELSKHDEFKEIATTSMYYINPTNKEA 201
Query: 196 KGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N + + + G +G KTG+T S + VA+A + ++SLIA++L ++
Sbjct: 202 KKRPIWNKDKLVQKKSKYYYEGCEGGKTGYTIQSKHSFVATATRNNKSLIAILLH-DQKH 260
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIK--DFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
T L GF N T ++ +E+ C +++ +T
Sbjct: 261 TYWNDVIKLFDYGFNNYTLETLYTKGQILCNYKVTKNFKVPILGNEDFCYLRRKDAK-DT 319
Query: 309 QMKEAKDKESHFIDFEKITLL--KNKITK 335
+ DK F K ++ N I +
Sbjct: 320 PKLKIDDKSLISKSFSKGDIILTGNIIYQ 348
>gi|149181680|ref|ZP_01860173.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus sp. SG-1]
gi|148850658|gb|EDL64815.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus sp. SG-1]
Length = 384
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 77/349 (22%), Positives = 136/349 (38%), Gaps = 23/349 (6%)
Query: 1 MRQ-------FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M++ + V I + S++ A + ++D +TG V+ E P
Sbjct: 1 MKKRRIRAYIYTVFIFSVIFSSLSGTAEAAPSVSAQRAIVIDQDTGRVLYEKDAHTPSRI 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS+TK+MTA + K L + +S NA + S+ K G + L++ + L++
Sbjct: 61 ASITKIMTAILAIESGK-----LEETVKVSNNAVKAEGSSIYLKPGEKIKLEDLVYGLML 115
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+S ND AVAIAE + + F+ MN ++ +G+ THF N HG+ H + + L
Sbjct: 116 RSGNDSAVAIAEHVGGSLDGFIFLMNKKAEEIGMRNTHFANPHGLDDHEDHYSTAFDMAL 175
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGK------KYPNTNWAVGT-FLGADGMKTGFTCASGF 226
+ +Y K K+ N N + + G KTG+T +
Sbjct: 176 LTKYAMQNEKYKEVAGTKVHTSPDPEHDWDRKWKNKNRLLTELYKYCTGGKTGYTKRAKR 235
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+V +A +G+Q+LIAV L D + GF N + +
Sbjct: 236 TLVTTATKGEQNLIAVTLNGPDD---WNDHIQMFEFGFKNFDTVIAVPEGNVKKIEDEFY 292
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI-DFEKITLLKNKIT 334
I +V T + + +++ K D ++ +
Sbjct: 293 KNKVYIKRDVLLTLTKEEEESVRVEYKLMKPEDSWRDGAVPDVVGKAVI 341
>gi|38142291|dbj|BAD00948.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|38142297|dbj|BAD00951.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|301799864|emb|CBW32439.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
pneumoniae OXC141]
Length = 413
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 74/367 (20%), Positives = 149/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ L+ L+TP+ IS + +++ + T++ L+ +V SA
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + +EK FV M G+ +N G+
Sbjct: 121 NSAAIALAEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + +PQ + + G +TN+ + G DG+KT
Sbjct: 181 NKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 GTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQ 300
Query: 275 YII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E++ ++ + ++ D ++ E T+
Sbjct: 301 QGDAYQDSKAPVQDGKEDTVTAVAPEDIYLIEQIGNQSSQSVQFTPDSKAIPAPLEARTV 360
Query: 329 LKNKITK 335
+ + +
Sbjct: 361 VGHLTYE 367
>gi|157828411|ref|YP_001494653.1| penicillin-binding protein dacF precursor [Rickettsia rickettsii
str. 'Sheila Smith']
gi|157800892|gb|ABV76145.1| penicillin-binding protein dacF precursor [Rickettsia rickettsii
str. 'Sheila Smith']
Length = 306
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 89/286 (31%), Positives = 139/286 (48%), Gaps = 3/286 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+V A +S + + ++D +G V+ + PASLTKLMT
Sbjct: 10 IFVVTFFFAPISEAKKAVRNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTL 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ K L + +S A++ PP K G T+T+ A+ LI+KSAND AV
Sbjct: 70 YLMFEAIEAGKLPLDKKLLVSAKAAKMPPCKLGLKAGETITVREAINGLIIKSANDAAVT 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +EK F MN +K LG+ T+F NA G TTARD+A L+ +K D+P
Sbjct: 130 VAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDIAKLAMALKRDYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
++ F +G N + GA+GMKTGF +G+N+V +A + +SLIAV
Sbjct: 190 KFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ G +R++ LL + + ++ N S
Sbjct: 250 VTGGKSAESRDQKMMGLLD---QHFNIKPIVSKPAIKLASNNKSTT 292
>gi|182678644|ref|YP_001832790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182634527|gb|ACB95301.1| Serine-type D-Ala-D-Ala carboxypeptidase [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 563
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 88/301 (29%), Positives = 148/301 (49%), Gaps = 3/301 (0%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
ET ++D N+GH + + +PAS+TK+MT Y++F L++ L + I +S
Sbjct: 71 ETPASVAAIVVDANSGHTLYAHGEHELRHPASITKVMTLYLLFEQLEQGHLRLDSAIHVS 130
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+A+ P+ GS++++++A++ ++ +SAND+AVAIAE++ E+ F M +
Sbjct: 131 PHAAAQKPTKLGLHAGSSISVEDAIRAVVTRSANDMAVAIAETVGGDEETFAGMMTRKAH 190
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
LG+S THF NA G+ TTA D+AIL I+ FP+Y YF G++ N
Sbjct: 191 MLGMSRTHFENASGLPNDAQVTTAHDLAILGRAIQDRFPRYYPYFSTHVFHYAGQEIRNH 250
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
N + G DG+KTG+T ASGFN++ S +G S++A +LG + R+++ A L+
Sbjct: 251 NHLLDQVEGMDGIKTGYTRASGFNLLTSVKRGGHSIVAAVLGGVSAGARDRIMARLIENQ 310
Query: 264 FYNKTDRK---KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
N + + E+P + + K A +
Sbjct: 311 IDNGATTRSVGLLTENTASDRLARSGEELPPELRRISMPMPPRTSLLGDAKAANAGKPDA 370
Query: 321 I 321
Sbjct: 371 A 371
>gi|116252224|ref|YP_768062.1| penicillin-binding protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115256872|emb|CAK07966.1| putative penicillin-binding protein [Rhizobium leguminosarum bv.
viciae 3841]
Length = 397
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 73/340 (21%), Positives = 136/340 (40%), Gaps = 8/340 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+R ++ A + + K+ +++ TG V+ D ++PASL KLM
Sbjct: 6 LRLLACLMPFATGAFAADGGAAGFATKVAQAYMIEATTGTVLLAKNEDQGFSPASLAKLM 65
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTLDNALKLLIVKS 115
T +VF L + + L T +S+ A + S + +++ +K + ++
Sbjct: 66 TMDLVFEALTKGQITLDTEYPVSEYAWRTGGAPSRAATMFASLKSRVRVEDLIKGVAIQG 125
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND + +AE + +E++F M ++ LG+ F N+ G+ TAR+M L+
Sbjct: 126 ANDSCIILAEGMAGSEQQFAVSMTRRARELGMEKAEFGNSTGLPDGKSKVTAREMVTLAA 185
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
++ +P YF E N N +G +GADG+ TGFT G++IVAS +
Sbjct: 186 ALQQTYPNLYPYFAQPDFEWNKIFQRNRNPLLGLDIGADGLATGFTEGEGYSIVASVERD 245
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNI 292
+ L + G R + + +L G +R+ I + V +
Sbjct: 246 GRRLFVALAGIASDKERTEEAKRVLEWGLTAFENRQIFGEKEVIGAASVYGGTARTVDLV 305
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + I N + + + T
Sbjct: 306 AKAPVSVYIPISNPDRLSARIIYRWPLAAPVKPDTQAGTL 345
>gi|57339684|gb|AAW49829.1| hypothetical protein FTT1029 [synthetic construct]
Length = 479
Score = 162 bits (410), Expect = 5e-38, Method: Composition-based stats.
Identities = 94/372 (25%), Positives = 147/372 (39%), Gaps = 58/372 (15%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
P + +D TG +++E D PASLTK+MT+Y+V S +K T I
Sbjct: 73 PANIELDAPAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMI 132
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
IS+NA+ S K G+ +++ N + + V S ND +A+AE + T + F MN
Sbjct: 133 PISENAASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQ 192
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199
T+K +G++ THF N G+ YTTA DMA+L+ +FP+ + KGL K
Sbjct: 193 TAKAIGMNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQ 252
Query: 200 ---------------------------------------------------YPNTNWAVG 208
N N +
Sbjct: 253 DSVSIADRKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLF 312
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
TF GADGMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL
Sbjct: 313 TFDGADGMKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYE 372
Query: 269 DRKKINY-----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE-AKDKESHFID 322
+ I D + + ++ + Y +K+ + +
Sbjct: 373 NVLLYKANSPVTISADNIPNAKAGQKLTVASNQNIYKTVPKTYVPYLKQGIEFNPNLNAP 432
Query: 323 FEKITLLKNKIT 334
+ + N +
Sbjct: 433 IKTGQTVGNLVI 444
>gi|62289988|ref|YP_221781.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
9-941]
gi|82699916|ref|YP_414490.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis biovar
Abortus 2308]
gi|225627545|ref|ZP_03785582.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
gi|237815492|ref|ZP_04594490.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
gi|254689296|ref|ZP_05152550.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 6 str.
870]
gi|254697432|ref|ZP_05159260.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 2 str.
86/8/59]
gi|254701819|ref|ZP_05163647.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis bv. 5 str. 513]
gi|254706741|ref|ZP_05168569.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis
M163/99/10]
gi|254710152|ref|ZP_05171963.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis B2/94]
gi|254714151|ref|ZP_05175962.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M644/93/1]
gi|254716791|ref|ZP_05178602.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M13/05/1]
gi|254730330|ref|ZP_05188908.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 4 str.
292]
gi|256031647|ref|ZP_05445261.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis
M292/94/1]
gi|256159791|ref|ZP_05457534.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti M490/95/1]
gi|256255049|ref|ZP_05460585.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti B1/94]
gi|256257546|ref|ZP_05463082.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 9 str.
C68]
gi|256369499|ref|YP_003107007.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
gi|260168777|ref|ZP_05755588.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. F5/99]
gi|260545262|ref|ZP_05821003.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
gi|260754808|ref|ZP_05867156.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
str. 870]
gi|260758030|ref|ZP_05870378.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
str. 292]
gi|260761853|ref|ZP_05874196.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
str. 86/8/59]
gi|260883826|ref|ZP_05895440.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
str. C68]
gi|261218589|ref|ZP_05932870.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
gi|261222240|ref|ZP_05936521.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
gi|261314205|ref|ZP_05953402.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M163/99/10]
gi|261317706|ref|ZP_05956903.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
B2/94]
gi|261321914|ref|ZP_05961111.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
gi|261752376|ref|ZP_05996085.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
513]
gi|261758258|ref|ZP_06001967.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
gi|265988739|ref|ZP_06101296.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M292/94/1]
gi|265998204|ref|ZP_06110761.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
gi|297248388|ref|ZP_06932106.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
B3196]
gi|62196120|gb|AAX74420.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 1 str.
9-941]
gi|82616017|emb|CAJ11050.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
melitensis biovar Abortus 2308]
gi|225617550|gb|EEH14595.1| D-alanyl-D-alanine carboxypeptidase [Brucella ceti str. Cudo]
gi|237790329|gb|EEP64539.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus str. 2308 A]
gi|255999659|gb|ACU48058.1| D-alanyl-D-alanine carboxypeptidase [Brucella microti CCM 4915]
gi|260096669|gb|EEW80544.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus NCTC 8038]
gi|260668348|gb|EEX55288.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 4
str. 292]
gi|260672285|gb|EEX59106.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 2
str. 86/8/59]
gi|260674916|gb|EEX61737.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 6
str. 870]
gi|260873354|gb|EEX80423.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella abortus bv. 9
str. C68]
gi|260920824|gb|EEX87477.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
gi|260923678|gb|EEX90246.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M13/05/1]
gi|261294604|gb|EEX98100.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M644/93/1]
gi|261296929|gb|EEY00426.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
B2/94]
gi|261303231|gb|EEY06728.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M163/99/10]
gi|261738242|gb|EEY26238.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella sp. F5/99]
gi|261742129|gb|EEY30055.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 5 str.
513]
gi|262552672|gb|EEZ08662.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
gi|264660936|gb|EEZ31197.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M292/94/1]
gi|297175557|gb|EFH34904.1| D-alanyl-D-alanine carboxypeptidase [Brucella abortus bv. 5 str.
B3196]
Length = 410
Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats.
Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 2/290 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A ++ L + + + D ++G ++ ++ PASL K+MT Y+ F
Sbjct: 24 FFASVAFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEA 83
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 84 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 143
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 144 GSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYAL 203
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA
Sbjct: 204 FSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAG 263
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
R+ A LL+ F + K + Q + P++ ++
Sbjct: 264 SAGQRDGQMAKLLTR-FGGVDNGKAAPLVAMAKPQAVTAKLKPDVVADLI 312
>gi|189024230|ref|YP_001934998.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
S19]
gi|189019802|gb|ACD72524.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella abortus
S19]
Length = 397
Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats.
Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 2/290 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A ++ L + + + D ++G ++ ++ PASL K+MT Y+ F
Sbjct: 11 FFASVAFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEA 70
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 71 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 130
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 131 GSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYAL 190
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA
Sbjct: 191 FSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAG 250
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
R+ A LL+ F + K + Q + P++ ++
Sbjct: 251 SAGQRDGQMAKLLTR-FGGVDNGKAAPLVAMAKPQAVTAKLKPDVVADLI 299
>gi|229586661|ref|YP_002845162.1| Penicillin-binding protein dacF precursor [Rickettsia africae
ESF-5]
gi|228021711|gb|ACP53419.1| Penicillin-binding protein dacF precursor [Rickettsia africae
ESF-5]
Length = 306
Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats.
Identities = 92/286 (32%), Positives = 139/286 (48%), Gaps = 3/286 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+V A +S + + ++D +G V+ + PASLTKLMT
Sbjct: 10 IFVVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTL 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KSAND AV
Sbjct: 70 YLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVT 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ +K D+P
Sbjct: 130 VAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
++ F +G N + GA+GMKTGF +G+N+V +A + +SLIAV
Sbjct: 190 KFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ G +R++ LL + + + F N S
Sbjct: 250 VTGGKSAASRDQKMMGLLD---QHFNIKPIVPKPSIKFASNNKSTT 292
>gi|152977572|ref|YP_001377089.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152026324|gb|ABS24094.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
391-98]
Length = 425
Score = 162 bits (410), Expect = 6e-38, Method: Composition-based stats.
Identities = 79/344 (22%), Positives = 132/344 (38%), Gaps = 34/344 (9%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ L D +TG V+ E PD AS++KLM Y V +K K T + IS
Sbjct: 31 IEAAAAILFDADTGKVLHEQNPDELLAVASMSKLMVVYAVLEAIKAGKITWNTKVNISDY 90
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNT 141
A E +N ++ L A + +L + +EK F++ +
Sbjct: 91 AYEVSRNNEFSNVPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLKLADEY 150
Query: 142 SKNLGLSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+K LGL F+NA G+ + +ARDM IL+ + T +P+ +
Sbjct: 151 AKKLGLKKYKFVNATGLNNADLKGKHPEGTDPNGENSLSARDMGILAKTLITKYPEMLED 210
Query: 188 FQIKGLEI-----KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + K + N NW + G DG+KTG + +G+ +A +GD
Sbjct: 211 TKQRFRNFPDNHPKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLR 270
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI----NYIIKDFYQQNLSNEVPNISE 294
LI+VI+ + R S L+ GF N +K N I +++ + P
Sbjct: 271 LISVIIKTKSMDERFTESRELIDYGFRNFEKKKLTLDKNNTISVVKGKEDAVSIAPEKEI 330
Query: 295 EVCTTQKEIINYNTQMKEAKDKE---SHFIDFEKITLLKNKITK 335
EV T + Y T + +K + + + +
Sbjct: 331 EVVTKKGSKPPYKTSTEAIPSLAEEGKLIAPIKKDAKVGSIVLE 374
>gi|15614136|ref|NP_242439.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus halodurans C-125]
gi|10174190|dbj|BAB05292.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus halodurans C-125]
Length = 382
Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats.
Identities = 73/312 (23%), Positives = 131/312 (41%), Gaps = 20/312 (6%)
Query: 1 MRQF-LVIIAMAMLSNI------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
MR+F L+ I++ + ++ + + L++ +TG V+ E
Sbjct: 1 MRRFWLIAISLFVTLSVGIPERVSAETTEPASVSAQAAILMEQSTGRVLYEKDAHTSLRI 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS+TK+MTA + + + + +S NA S+ + G + L + + L++
Sbjct: 61 ASITKIMTALLAIESGR-----MDEWVKVSSNAEGTEGSSLYLRAGEKIKLSDLVYGLML 115
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAI 172
+S ND AVAIAE + + FV MN ++ LG+S T F N HG+ H HY++A DMA+
Sbjct: 116 RSGNDAAVAIAEHVGGSMDGFVYMMNQKAEELGMSNTVFQNPHGLDDHEDHYSSAYDMAL 175
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAVGT-FLGADGMKTGFTCASGFNI 228
L+ + G++ + N N + + + G KTG+T + +
Sbjct: 176 LTRYAMNNETYQEISGTKTHRVDNGEQIRVWKNKNRLLTQLYKYSTGGKTGYTKRAKRTL 235
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
V++A + D LI V L A +L + F+ + + +
Sbjct: 236 VSTASKDDLDLIVVTLNAPSD---WHDHMNLFNWAFHTFGMTELLEEGKVKGLKDEFYAG 292
Query: 289 VPNISEEVCTTQ 300
S +V
Sbjct: 293 QVYASHDVVYPL 304
>gi|306843944|ref|ZP_07476539.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1]
gi|306275699|gb|EFM57423.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO1]
Length = 397
Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats.
Identities = 81/290 (27%), Positives = 140/290 (48%), Gaps = 2/290 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A ++ L + + + D ++G ++ ++ PASL K+MT Y+ F
Sbjct: 11 FFASVAFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEA 70
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 71 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 130
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 131 GSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYAL 190
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA
Sbjct: 191 FSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNKHLVGVVLGAG 250
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
R+ A LL+ F + K + Q + + P++ ++
Sbjct: 251 SAGQRDGQMAKLLTR-FGGADNGKAAPLVAMAKPQAVTAKQKPDVVADLI 299
>gi|326405324|ref|YP_004285406.1| putative peptidase S11 [Acidiphilium multivorum AIU301]
gi|325052186|dbj|BAJ82524.1| putative peptidase S11 [Acidiphilium multivorum AIU301]
Length = 453
Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats.
Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 1/254 (0%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L I + + ++D TG +++E+ + PASLTKLMT + F L
Sbjct: 54 LGGIASPAASGPLAPGIDWIVMDAATGRILSEHNAYNERFPASLTKLMTLDLAFHALSHG 113
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTE 131
+ TP+ +S A+ P G T+T+ A+ + SAND A A+ + +
Sbjct: 114 RLNANTPLPVSPAAASVQPVKLNLVAGQTVTVMQAMLGMTTLSANDAATALGQYLGGGSI 173
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
++ M + LG+ + F N G+ T A DMAIL+ + D+PQY + F +
Sbjct: 174 RRVAAEMTARAHALGMERSEFRNPSGLPNPNQVTDAYDMAILARHLLLDYPQYRYLFSVP 233
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+G+ PN + + + GA GMKTG+T + FN+V +A++ LI V + A
Sbjct: 234 SFRFEGRTIPNIDGMLKRYNGAIGMKTGYTDLARFNLVTAAVRNGHMLIGVEMHAPSWIV 293
Query: 252 RNKVSASLLSMGFY 265
LL GF
Sbjct: 294 AYNRMTQLLDAGFA 307
>gi|148261820|ref|YP_001235947.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum
JF-5]
gi|146403501|gb|ABQ32028.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidiphilium cryptum
JF-5]
Length = 453
Score = 162 bits (409), Expect = 7e-38, Method: Composition-based stats.
Identities = 73/254 (28%), Positives = 117/254 (46%), Gaps = 1/254 (0%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L I + + ++D TG +++E+ + PASLTKLMT + F L
Sbjct: 54 LGGIASPAASGPLAPGIDWIVMDAATGRILSEHNAYNERFPASLTKLMTLDLAFHALSHG 113
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTE 131
+ TP+ +S A+ P G T+T+ A+ + SAND A A+ + +
Sbjct: 114 RLNANTPLPVSPAAASVQPVKLNLVAGQTVTVMQAMLGMTTLSANDAATALGQYLGGGSI 173
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
++ M + LG+ + F N G+ T A DMAIL+ + D+PQY + F +
Sbjct: 174 RRVAAEMTARAHALGMERSEFRNPSGLPNPNQVTDAYDMAILARHLLLDYPQYRYLFSVP 233
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+G+ PN + + + GA GMKTG+T + FN+V +A++ LI V + A
Sbjct: 234 SFRFEGRTIPNIDGMLKRYNGAIGMKTGYTDLARFNLVTAAVRNGHMLIGVEMHAPSWIV 293
Query: 252 RNKVSASLLSMGFY 265
LL GF
Sbjct: 294 AYNRMTQLLDAGFA 307
>gi|188584526|ref|YP_001927971.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
BJ001]
gi|179348024|gb|ACB83436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium populi
BJ001]
Length = 494
Score = 162 bits (409), Expect = 8e-38, Method: Composition-based stats.
Identities = 92/336 (27%), Positives = 163/336 (48%), Gaps = 12/336 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDHPWNPA 54
++++A + L + ++D +G + D +PA
Sbjct: 17 VLLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDALRHPA 76
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK+MT Y++F L++ + L +P++IS NA+ PS + GST+T++ A+K L+ K
Sbjct: 77 SITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKALVTK 136
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND+A AI E++ +E +F + M +K LG+S TH+ NA G+ TTA D+ IL+
Sbjct: 137 SANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDLTILA 196
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ +A
Sbjct: 197 RAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMTAAKL 256
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
GD+ ++A++LG +R+++ A L+ + + + ++ V
Sbjct: 257 GDRQIVAIVLGGKSGASRDRIMADLVRANLPRAYAGARQTAPVVEVAERGRPAVVAEADS 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
T + ++ + +D T
Sbjct: 317 RTRTVLASAD--DDTVETTNSTSTAPLDIRPATTTP 350
>gi|225378650|ref|ZP_03755871.1| hypothetical protein ROSEINA2194_04319 [Roseburia inulinivorans DSM
16841]
gi|225209487|gb|EEG91841.1| hypothetical protein ROSEINA2194_04319 [Roseburia inulinivorans DSM
16841]
Length = 461
Score = 162 bits (409), Expect = 8e-38, Method: Composition-based stats.
Identities = 78/362 (21%), Positives = 131/362 (36%), Gaps = 37/362 (10%)
Query: 4 FLVIIAMAML----SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
L II+ L + A P L++ +TG ++ E D PAS+TK+
Sbjct: 14 ILTIISAVCLGKVDVKAADYWPDAPETLSPGVILMEESTGTILYEKNSDEAHYPASITKI 73
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
MT + L+ +T S + + S G MTL+ L ++++SAN+
Sbjct: 74 MTTLLALEN-----GNLSDMVTFSDDAINNTEGSGIARDYGEQMTLEQCLYGVMLESANE 128
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A A+AE + T + FV MN +K LG + THF N HG+ HYTTA DMA+++
Sbjct: 129 CAYAVAEHVGGTVENFVDMMNAKAKELGCTNTHFANPHGLQDENHYTTAHDMALIAQAAY 188
Query: 179 TD----------------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+ ++ ++ Y N N + G KTG+T
Sbjct: 189 QNETFRIIIGTKMYTIPPTNKHAEETVLRNHHDMLCTYHNANR-KYLYPYCVGGKTGYTA 247
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+ +V A + +LI V++ N + +L F N +
Sbjct: 248 TANSTLVTYAEKDGMTLICVVMDTQSPNQ-FIDTVNLFDYAFDNFQVLNVAENDTDYSAE 306
Query: 283 QNLSN---------EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ N + + + + + E D + T +
Sbjct: 307 TTVDNGNLDNIAPFVELDKEAVIVLPKTAEFSDTSSSVEYNDSDPEIAGSITYTYAGRNV 366
Query: 334 TK 335
K
Sbjct: 367 GK 368
>gi|196039076|ref|ZP_03106383.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
NVH0597-99]
gi|196030221|gb|EDX68821.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
NVH0597-99]
Length = 374
Score = 162 bits (409), Expect = 8e-38, Method: Composition-based stats.
Identities = 83/342 (24%), Positives = 137/342 (40%), Gaps = 17/342 (4%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K + +S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----ERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
E + +K DK + +D K+ +
Sbjct: 292 KNSFSVPLTEEEKKSVVLKVELDKSAKLVDGVKVGKTGVYVG 333
>gi|256253946|ref|ZP_05459482.1| cobalamin synthesis protein P47K [Brucella ceti B1/94]
Length = 630
Score = 162 bits (408), Expect = 8e-38, Method: Composition-based stats.
Identities = 111/303 (36%), Positives = 176/303 (58%), Gaps = 11/303 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR + A+A + + +D TG V + W PASLTK+M
Sbjct: 1 MRIWFA--AVAFSGIALSGAAANPSIA------VDVATGKVYEQQDAFQRWYPASLTKMM 52
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 53 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 112
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ +
Sbjct: 113 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 172
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 173 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 232
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+
Sbjct: 233 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 291
Query: 299 TQK 301
Q
Sbjct: 292 EQA 294
>gi|254719144|ref|ZP_05180955.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. 83/13]
gi|265984138|ref|ZP_06096873.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
gi|264662730|gb|EEZ32991.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella sp. 83/13]
Length = 410
Score = 162 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 81/290 (27%), Positives = 140/290 (48%), Gaps = 2/290 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A ++ L + + + D ++G ++ ++ PASL K+MT Y+ F
Sbjct: 24 FFASVAFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEA 83
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 84 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 143
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 144 GSEAAFARLMTQRARQIGMKSTIFANPSGLTASVSQLTTARDMAVLGMALRRDFPEEYAL 203
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA
Sbjct: 204 FSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNKHLVGVVLGAG 263
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
R+ A LL+ F + K + Q + + P++ ++
Sbjct: 264 SAGQRDGQMAKLLTR-FGGADNGKAAPLVAMAKPQAVTAKQKPDVVADLI 312
>gi|157964469|ref|YP_001499293.1| penicillin-binding protein dacF precursor [Rickettsia massiliae
MTU5]
gi|157844245|gb|ABV84746.1| Penicillin-binding protein dacF precursor [Rickettsia massiliae
MTU5]
Length = 313
Score = 162 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 91/286 (31%), Positives = 138/286 (48%), Gaps = 3/286 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+V A +S + + ++D +G V+ + PASLTKLMT
Sbjct: 17 IFVVTFFFAPISEATKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTL 76
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KSAND AV
Sbjct: 77 YLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVT 136
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ +K D+P
Sbjct: 137 VAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYP 196
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
++ F +G N + GA+GMKTGF +G+N+V +A + +SLIAV
Sbjct: 197 KFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAV 256
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ G +R++ LL + + + N S
Sbjct: 257 VTGGKSAASRDQKMMGLLD---QHFNIKPIVPKPSIKLASNNKSTT 299
>gi|34580546|ref|ZP_00142026.1| penicillin-binding protein dacF precursor [Rickettsia sibirica 246]
gi|28261931|gb|EAA25435.1| penicillin-binding protein dacF precursor [Rickettsia sibirica 246]
Length = 306
Score = 162 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 91/286 (31%), Positives = 138/286 (48%), Gaps = 3/286 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+V A +S + + ++D +G V+ + PASLTKLMT
Sbjct: 10 IFVVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTL 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KSAND AV
Sbjct: 70 YLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVT 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ +K D+P
Sbjct: 130 VAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
++ F +G N + GA+GMKTGF +G+N+V +A + +SLIAV
Sbjct: 190 KFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ G +R++ LL + + + N S
Sbjct: 250 VTGGKSAASRDQKMMGLLD---QHFNIKPIVPKPSIKLASNNKSTT 292
>gi|294496884|ref|YP_003560584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551]
gi|295702251|ref|YP_003595326.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319]
gi|294346821|gb|ADE67150.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551]
gi|294799910|gb|ADF36976.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319]
Length = 451
Score = 162 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 74/380 (19%), Positives = 151/380 (39%), Gaps = 52/380 (13%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAET--------NKLPYYTLLDTNTGHVIAENYPDHPWNP 53
+Q + +IA+ +++++F + A + L++ +TG V+ D
Sbjct: 7 KQLICVIAVMLMASVFFVSTQASAAPKTDDIGVEADAAILVEASTGKVLYGKNTDALLGI 66
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALK 109
AS+TK+MT Y+V +K+KK + +SK + +Y SN + T+
Sbjct: 67 ASMTKMMTEYLVLESIKDKKLSWDQRVPVSKYAAKISQDYGLSNVPLIENQKYTVKELYD 126
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------- 160
+ + SAN A+A+AE++ +E+ F++ MN T+K L + + F+N+ G+
Sbjct: 127 AMAIYSANGAAIALAEAVSGSEENFIKLMNETAKRLNMGESKFVNSTGLSNSLLKGMYPK 186
Query: 161 -----HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA---- 206
+ +AR +A L++ + D+P+ + + K N N
Sbjct: 187 GTKEEDENLLSARAVATLAYHLIHDYPESLEVAKTPSKMFRQGQQGETKMNNWNKMLPGF 246
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL-----DRNTRNKVSASLLS 261
+ G DG+KTG T +G +A + I V++ A R + +L
Sbjct: 247 SAAYSGVDGLKTGHTDFAGQCFTGTAERNGVRYITVVMNAKENGKSTEAARFSQTKKILD 306
Query: 262 MGFYNKTDRKKI---------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
F + ++ + I + ++ P S ++ T + + + K
Sbjct: 307 YAFSHFQLKEVVPANGEIKGHETIDVAKGKSKEASVSPKNSVKIITEKGQKDHTKINFKL 366
Query: 313 AK---DKESHFIDFEKITLL 329
+ + +K +
Sbjct: 367 NDKVMNDQKVVAPIKKGETV 386
>gi|306838136|ref|ZP_07470992.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653]
gi|306406726|gb|EFM62949.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NF 2653]
Length = 397
Score = 162 bits (408), Expect = 9e-38, Method: Composition-based stats.
Identities = 81/290 (27%), Positives = 140/290 (48%), Gaps = 2/290 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A ++ L + + + D ++G ++ ++ PASL K+MT Y+ F
Sbjct: 11 FFASVAFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEA 70
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 71 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 130
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 131 GSEAAFARLMTQRARQIGMKSTIFANPSGLTASVSQLTTARDMAVLGMALRRDFPEEYAL 190
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA
Sbjct: 191 FSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNKHLVGVVLGAG 250
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
R+ A LL+ F + K + Q + + P++ ++
Sbjct: 251 SAGQRDGQMAKLLTR-FGGADNGKAAPLVAMAKPQAVTAKQKPDVVADLI 299
>gi|167773011|ref|ZP_02445064.1| hypothetical protein ANACOL_04399 [Anaerotruncus colihominis DSM
17241]
gi|167664944|gb|EDS09074.1| hypothetical protein ANACOL_04399 [Anaerotruncus colihominis DSM
17241]
Length = 763
Score = 162 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 62/268 (23%), Positives = 117/268 (43%), Gaps = 12/268 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
L+D +TG ++ E + PAS+TK+MT + K + T +
Sbjct: 56 PPELYAESAILVDADTGQILLEKNMNKKMYPASITKIMTCLLAMERAKPGDVVTVTDEVV 115
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
++ + ++ G +T++ ++V+SAND A +A + + + F MN+ +
Sbjct: 116 AEVPRDT--THIALTGGEQLTVEQLEYAMMVESANDAASVLAAHISGSTQAFAMLMNDRA 173
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP------QYMHYFQIKGLEIK 196
K LG THF NA+G+ HYT+A DMA+++ + + +
Sbjct: 174 KELGAKDTHFTNANGLPDPSHYTSAYDMALITRAAMQYPEFRSLAGTTSYEIPPTNKQSE 233
Query: 197 GKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD-RNTR 252
++ N N+ T+ GA KTG+T +G +V A + +LI +++ + + +
Sbjct: 234 TRRLNNRNYMFTLNDTYPGAFAGKTGWTEEAGHTLVTLAERDGVTLICIVMHSDGVVDAQ 293
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDF 280
S ++L GF N T ++
Sbjct: 294 YIDSTAILDYGFDNYTRAVVSKDRVEPK 321
>gi|118497499|ref|YP_898549.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
novicida U112]
gi|195536192|ref|ZP_03079199.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
novicida FTE]
gi|118423405|gb|ABK89795.1| D-alanyl-D-alanine carboxypeptidase [Francisella novicida U112]
gi|194372669|gb|EDX27380.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
novicida FTE]
Length = 444
Score = 162 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 93/372 (25%), Positives = 147/372 (39%), Gaps = 58/372 (15%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
P + +D TG +++E D PASLTK+MT+Y+V S +K T +
Sbjct: 47 PANIELDAPAWVAMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMV 106
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
IS+NA+ S K G+ +++ N + + V S ND +A+AE + T + F MN
Sbjct: 107 PISENAASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQ 166
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199
T+K +G++ THF N G+ YTTA DMA+L+ +FP+ + KGL K
Sbjct: 167 TAKAIGMNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQ 226
Query: 200 ---------------------------------------------------YPNTNWAVG 208
N N +
Sbjct: 227 DSVSIADRKQCLPKFDRATGNVIESYTVKGLDDQAKDKCNKLFPKGDNFVLQNNRNRLLF 286
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
TF GADGMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL
Sbjct: 287 TFDGADGMKTGHTDAAGYCLVSSAKQDSERFISVVLGTTSSAKRDSESAKLLRYALSKYE 346
Query: 269 DRKKINY-----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE-AKDKESHFID 322
+ I D + + ++ + Y +K+ + +
Sbjct: 347 NVLLYKANSPVTISADNIPNAKAGQKLTVASNQNIYKTVPKTYVPYLKQGIEFNPNLNAP 406
Query: 323 FEKITLLKNKIT 334
+ + N +
Sbjct: 407 IKTGQTVGNLVI 418
>gi|254564164|ref|YP_003071259.1| D-alanyl-D-alanine carboxypeptidase [Methylobacterium extorquens
DM4]
gi|254271442|emb|CAX27457.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium
extorquens DM4]
Length = 494
Score = 162 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 91/336 (27%), Positives = 163/336 (48%), Gaps = 12/336 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDHPWNPA 54
++++A + L + ++D +G + D +PA
Sbjct: 17 VLLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDALRHPA 76
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK+MT Y++F L++ + L +P++IS NA+ PS + GST+T++ A+K L+ K
Sbjct: 77 SITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKALVTK 136
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND+A AI E++ +E +F + M +K LG+S TH+ NA G+ TTA D+ +L+
Sbjct: 137 SANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAYDLTLLA 196
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ +A
Sbjct: 197 RAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMTAAKL 256
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
GD+ ++A++LG +R+++ A L+ + + + ++ V
Sbjct: 257 GDRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQTAPVVEVAERGRPAVVAEADS 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
T + ++ + +D T
Sbjct: 317 RTRTVIASAD--DEDIETTSSTSNAPLDIRPATTTP 350
>gi|187932735|ref|YP_001884791.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B str.
Eklund 17B]
gi|187720888|gb|ACD22109.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B
str. Eklund 17B]
Length = 443
Score = 162 bits (408), Expect = 1e-37, Method: Composition-based stats.
Identities = 70/327 (21%), Positives = 130/327 (39%), Gaps = 21/327 (6%)
Query: 1 MRQFLVIIAMAMLSNIFP-FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++ + + + ++S+I +S L+D +TG ++ PD PAS TK+
Sbjct: 9 LKTLIFFLFIFLVSSINVMAVSSPPEINAEGSVLMDASTGEILFSKNPDKVLEPASTTKV 68
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTA + L + ++++ ++ + KG +T+ + L L+++S ND
Sbjct: 69 MTAILTLENCD-----LNEEVVVTEDFTKIDGTTIGLLKGDIVTVKDLLLGLLLESGNDA 123
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A A+A + + KF MN + +G THF N G+ H TTA D+A++
Sbjct: 124 ANALACHVSSSIDKFAVLMNKKATEIGAVNTHFKNPSGLPDPEHLTTAHDLALIMNEAIK 183
Query: 180 DF------PQYMHYFQIKGLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNI 228
+ + IK + N N + + K G+T S
Sbjct: 184 NDKFLELSKVMTYEIPIKNDSSRTIWINNKNHMINKNSMYYYQYTLTGKNGYTTKSNHTY 243
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-DFYQQNLSN 287
+A L+A L ALD++ + ++ + GF N + D + +
Sbjct: 244 TVAAENNGHILVASYLNALDKDKNFEDMRTVFNYGFNNFYFSNIYKKGQEIDSIKLHNGL 303
Query: 288 EVPNISEEV---CTTQKEIINYNTQMK 311
VP I+ + ++ NT +K
Sbjct: 304 TVPLIASKDVNCVVPNEDKDKLNTYIK 330
>gi|254369366|ref|ZP_04985378.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
subsp. holarctica FSC022]
gi|157122316|gb|EDO66456.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
subsp. holarctica FSC022]
Length = 444
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 93/372 (25%), Positives = 146/372 (39%), Gaps = 58/372 (15%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
P + +D TG +++E D PASLTK+MT+Y+V S +K T I
Sbjct: 47 PANIELDAPAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMI 106
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
IS+NA+ S K G+ +++ N + + V S ND +A+AE + T + F MN
Sbjct: 107 PISENAASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQ 166
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199
T+K +G++ THF N G+ YTTA DMA+L+ +FP+ + KGL K
Sbjct: 167 TAKAIGMNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQ 226
Query: 200 ---------------------------------------------------YPNTNWAVG 208
N N +
Sbjct: 227 DSVSIADRKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLF 286
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
TF GADGMKTG T A+G+ +V+S Q + I+V+LG R+ SA LL
Sbjct: 287 TFDGADGMKTGHTDAAGYCLVSSVKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYE 346
Query: 269 DRKKINY-----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE-AKDKESHFID 322
+ I D + + ++ + Y +K+ + +
Sbjct: 347 NVLLYKANSPVTISADNIPNAKAGQKLTVASNQNIYKTVPKTYVPYLKQGIEFNPNLNAP 406
Query: 323 FEKITLLKNKIT 334
+ + N +
Sbjct: 407 IKTGQNVGNLVI 418
>gi|240141656|ref|YP_002966136.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium
extorquens AM1]
gi|240011633|gb|ACS42859.1| putative D-alanyl-D-alanine carboxypeptidase [Methylobacterium
extorquens AM1]
Length = 494
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 91/336 (27%), Positives = 163/336 (48%), Gaps = 12/336 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDHPWNPA 54
++++A + L + ++D +G + D +PA
Sbjct: 17 VLLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDALRHPA 76
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK+MT Y++F L++ + L +P++IS NA+ PS + GST+T++ A+K L+ K
Sbjct: 77 SITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKALVTK 136
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND+A AI E++ +E +F + M +K LG+S TH+ NA G+ TTA D+ +L+
Sbjct: 137 SANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDLTLLA 196
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ +A
Sbjct: 197 RAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMTAAKL 256
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
GD+ ++A++LG +R+++ A L+ + + + ++ V
Sbjct: 257 GDRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQTAPVVEVAERGRPAVVAEADS 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
T + ++ + +D T
Sbjct: 317 RTRTVLASAD--DEDIETTSSTSNAPLDIRPATTTP 350
>gi|218533141|ref|YP_002423957.1| serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
chloromethanicum CM4]
gi|218525444|gb|ACK86029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
chloromethanicum CM4]
Length = 494
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 91/336 (27%), Positives = 163/336 (48%), Gaps = 12/336 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDHPWNPA 54
++++A + L + ++D +G + D +PA
Sbjct: 17 VLLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDALRHPA 76
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK+MT Y++F L++ + L +P++IS NA+ PS + GST+T++ A+K L+ K
Sbjct: 77 SITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKALVTK 136
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND+A AI E++ +E +F + M +K LG+S TH+ NA G+ TTA D+ +L+
Sbjct: 137 SANDVACAIGENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDLTLLA 196
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ +A
Sbjct: 197 RAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMTAAKL 256
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
GD+ ++A++LG +R+++ A L+ + + + ++ V
Sbjct: 257 GDRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQTAPVVEVAERGRPAVVAEADS 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
T + ++ + +D T
Sbjct: 317 RTRTVLASAD--DEDIETTSSTSNAPLDIRPATTTP 350
>gi|15894549|ref|NP_347898.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
ATCC 824]
gi|15024194|gb|AAK79238.1|AE007639_11 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
ATCC 824]
gi|325508682|gb|ADZ20318.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA
2018]
Length = 425
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 78/371 (21%), Positives = 146/371 (39%), Gaps = 46/371 (12%)
Query: 1 MRQFLVI------IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
MR+ ++ + + NI+ + L+D N+G ++ E + + PA
Sbjct: 1 MRKLIIFTLTVMFLFSTININIYAKVPDPPNVSADGAVLMDGNSGQILYEKNMNASYPPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S TK+MTA + K + + +K + ++ G +T+ + L L++
Sbjct: 61 STTKIMTALLTLEKCKLDDKVKVSNDFTTKYLALRDGNSIGITNGEELTVRDLLHALLLI 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND AVA+AE + + + F MN + LG + T+F N +G+ H T+A+D+A++
Sbjct: 121 SANDAAVALAEHISGSPQAFATLMNKKAAELGCTNTNFKNPNGLYDKDHKTSAKDLALIM 180
Query: 175 WRIKT-----------DFPQYMHYFQIKGLEIKGKKYPNTNWAVG-----TFLGADGMKT 218
+ ++ K + + N + V + G K
Sbjct: 181 KELSKYPEYQKISTTLNYQMSPTNNMDAEKTKKSRNFWNEDKLVYKNSKNYYDKCIGGKA 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
G+T S + V+ A + L+ ++ + T S +L GF N +K +
Sbjct: 241 GYTILSLHSFVSVANNNGRKLVVALVHSK-EKTFYDDSKALFEYGFNNFQQKKLFSKGDI 299
Query: 279 DFYQ-------------------QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+N S VP + + + +K+ + TQ+ AK
Sbjct: 300 VENYYLDGTKIPLLASEDYYYCTENGSKSVPKVQVDKNSLKKKYFSKGTQIMAAK----I 355
Query: 320 FIDFEKITLLK 330
ID ++I LK
Sbjct: 356 SIDGKQIGTLK 366
>gi|165933122|ref|YP_001649911.1| D-alanyl-D-alanine serine-type carboxypeptidase [Rickettsia
rickettsii str. Iowa]
gi|165908209|gb|ABY72505.1| D-alanyl-D-alanine serine-type carboxypeptidase [Rickettsia
rickettsii str. Iowa]
Length = 306
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 88/286 (30%), Positives = 138/286 (48%), Gaps = 3/286 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+V A +S + + ++D +G V+ + PASLTKLMT
Sbjct: 10 ILVVTFFFAPISEAKKAVRNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTL 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ K L + +S A++ PP K G T+T+ A+ LI+KSAND AV
Sbjct: 70 YLMFEAIEAGKLPLDKKLLVSAKAAKMPPCKLGLKAGETITVREAINGLIIKSANDAAVT 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +EK F MN +K LG+ T+F NA G TTARD+A L+ +K D+P
Sbjct: 130 VAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDIAKLAMALKRDYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
++ F +G N + GA+GMKTGF +G+N+V +A + +SLIAV
Sbjct: 190 KFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ G +R++ LL + + ++ N S
Sbjct: 250 VTGGKSAESRDQKMMGLLD---QHFNIKPIVSKPAIKLASNNKSTT 292
>gi|52081783|ref|YP_080574.1| putative carboxypeptidase [Bacillus licheniformis ATCC 14580]
gi|52787169|ref|YP_092998.1| hypothetical protein BLi03478 [Bacillus licheniformis ATCC 14580]
gi|319647699|ref|ZP_08001917.1| hypothetical protein HMPREF1012_02956 [Bacillus sp. BT1B_CT2]
gi|52004994|gb|AAU24936.1| putative carboxypeptidase [Bacillus licheniformis ATCC 14580]
gi|52349671|gb|AAU42305.1| putative protein [Bacillus licheniformis ATCC 14580]
gi|317390040|gb|EFV70849.1| hypothetical protein HMPREF1012_02956 [Bacillus sp. BT1B_CT2]
Length = 384
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 80/321 (24%), Positives = 134/321 (41%), Gaps = 22/321 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
R L II + + K L+D +G V+ E PAS+T
Sbjct: 5 RSLLFIIVLCLTLFFHSSAQAGEKNKPEIKSVSAILIDGKSGQVLYEKNSRKKMYPASIT 64
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+ TA L + +SKNA++ S+ ++G ++ L L+ L++ S N
Sbjct: 65 KIATAIYAIEN-----GNLEDRVKVSKNAAQTEGSSVYLEEGESVPLKRLLQGLLMNSGN 119
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNL-GLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
D AIAE L + K+F +N G+ THFMN HG+ HYTT+ DMA ++
Sbjct: 120 DAGTAIAEHLSGSVKQFADDLNAFIAEHAGVHDTHFMNPHGLFDKNHYTTSADMARITEY 179
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVG---TFLGADGMKTGFTCASGFNIV 229
+ F K + G+ + N + + + G G KTGF S +V
Sbjct: 180 -AMKNKTFRALFSEKQTDWHGQTWDTTLKNHHRMLTGEIPYKGITGGKTGFVDESKHTLV 238
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
+A +G LIAV++ A + + +LL GF+N ++ K + +
Sbjct: 239 TTATRGSLDLIAVVMKADSKKMMYSDTKALLDEGFHNFETQEL----KKGEAFTDQNGTS 294
Query: 290 PNISEEVCTTQKEIINYNTQM 310
+ + + T+K+ + +
Sbjct: 295 HELKDPLYVTKKKGEVLSENV 315
>gi|89256395|ref|YP_513757.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
family protein [Francisella tularensis subsp. holarctica
LVS]
gi|115314839|ref|YP_763562.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
subsp. holarctica OSU18]
gi|156502486|ref|YP_001428551.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167010417|ref|ZP_02275348.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
holarctica FSC200]
gi|254367733|ref|ZP_04983754.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
[Francisella tularensis subsp. holarctica 257]
gi|290953818|ref|ZP_06558439.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
holarctica URFT1]
gi|295312829|ref|ZP_06803561.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
holarctica URFT1]
gi|89144226|emb|CAJ79499.1| D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein)
family protein [Francisella tularensis subsp. holarctica
LVS]
gi|115129738|gb|ABI82925.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
subsp. holarctica OSU18]
gi|134253544|gb|EBA52638.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein)
[Francisella tularensis subsp. holarctica 257]
gi|156253089|gb|ABU61595.1| D-alanyl-D-alanine carboxypeptidase [Francisella tularensis subsp.
holarctica FTNF002-00]
Length = 444
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 93/372 (25%), Positives = 146/372 (39%), Gaps = 58/372 (15%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
P + +D TG +++E D PASLTK+MT+Y+V S +K T I
Sbjct: 47 PANIELDAPAWVTMDYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMI 106
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
IS+NA+ S K G+ +++ N + + V S ND +A+AE + T + F MN
Sbjct: 107 PISENAASTGGSKMYVKAGAKVSVRNLVTGMDVVSGNDATIALAEYIGGTTQAFTDLMNQ 166
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199
T+K +G++ THF N G+ YTTA DMA+L+ +FP+ + KGL K
Sbjct: 167 TAKAIGMNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQ 226
Query: 200 ---------------------------------------------------YPNTNWAVG 208
N N +
Sbjct: 227 DSVSIADRKQCLPKFDRATGNVIESYTVKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLF 286
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
TF GADGMKTG T A+G+ +V+S Q + I+V+LG R+ SA LL
Sbjct: 287 TFDGADGMKTGHTDAAGYCLVSSVKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYE 346
Query: 269 DRKKINY-----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE-AKDKESHFID 322
+ I D + + ++ + Y +K+ + +
Sbjct: 347 NVLLYKANSPVTISADNIPNAKAGQKLTVASNQNIYKTVPKTYVPYLKQGIEFNPNLNAP 406
Query: 323 FEKITLLKNKIT 334
+ + N +
Sbjct: 407 IKTGQNVGNLVI 418
>gi|138895855|ref|YP_001126308.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus
thermodenitrificans NG80-2]
gi|134267368|gb|ABO67563.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus
thermodenitrificans NG80-2]
Length = 446
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 74/330 (22%), Positives = 130/330 (39%), Gaps = 21/330 (6%)
Query: 1 MRQF-----LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+++ L+ + ++S + L L++ ++G ++ AS
Sbjct: 66 MKRWKRLVWLIALTAGIMSCLPGKLHAMNGVSAKSAILIEQHSGRILFAKDAHTKRRIAS 125
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MTA + K L +T+S A S+ ++G M L + + L+++S
Sbjct: 126 ITKIMTAILAIESGK-----LDDTVTVSARAVRTEGSSIYLRQGEKMKLRDLVYGLMLRS 180
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILS 174
ND AVAIAE + + + FV MN + +G+ T F N HG+ HY+TA DMA+L
Sbjct: 181 GNDAAVAIAEHVGGSVEGFVFLMNEKAAEIGMRDTEFANPHGLDDAESHYSTAYDMALLM 240
Query: 175 WRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFN 227
+ + E + + N N + + + G KTG+T +
Sbjct: 241 QYAMKNKEFRRISGTKVYRAPAPPGEDGARVWRNKNKLLTSLYEYCTGGKTGYTKRAHRT 300
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+V +A + L+AV L A D ++ GF N K I
Sbjct: 301 LVTTASKDGIDLVAVTLDASDD---WNDHIAMYEYGFSNYRIAKVSGKRIVKRISDPFYK 357
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
+ ++ E ++K K
Sbjct: 358 GRLQAARDLRYPVTEKEMGELRVKVYLLKP 387
>gi|13474143|ref|NP_105711.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
gi|14024895|dbj|BAB51497.1| penicillin-binding protein [Mesorhizobium loti MAFF303099]
Length = 304
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 90/258 (34%), Positives = 145/258 (56%), Gaps = 3/258 (1%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+++ +A S P L++ + ++D TG + E PASLTK+MT
Sbjct: 26 LLLMVAGCSTATPPDQVLTVPAPPQKYAAIVVDVKTGKQMFEVNSTAQRYPASLTKMMTL 85
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ + T I +S +A+ PP+ F++G T+ +D+A++ ++VKSAND+AVA
Sbjct: 86 YLLFEAMESGRVTKETQIPVSDHAASQPPTKMRFRRGETIDVDSAIRAIVVKSANDVAVA 145
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ E L +E +F M + +++LG+++T F NA G+ G TTARDMA+L ++ FP
Sbjct: 146 VGEYLGGSEDRFAAMMTSKARSLGMTSTTFRNASGLPDDGQMTTARDMAVLGMALRQRFP 205
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
Q+ HYF +G+ N +G G DG+KTG+ ASGFNIV S + LI V
Sbjct: 206 QHFHYFSESDFMFRGRLVRGHNDMLGRVRGVDGIKTGYIRASGFNIVTSYNADGRQLIVV 265
Query: 243 ILGALDRNTRNKVSASLL 260
++GA RN +L+
Sbjct: 266 VMGADSARQRNDHVEALI 283
>gi|15604254|ref|NP_220770.1| penicillin-binding protein DACF precursor (dacF) [Rickettsia
prowazekii str. Madrid E]
gi|3860946|emb|CAA14846.1| PENICILLIN-BINDING PROTEIN DACF PRECURSOR (dacF) [Rickettsia
prowazekii]
gi|292572000|gb|ADE29915.1| Penicillin-binding protein dacF precursor [Rickettsia prowazekii
Rp22]
Length = 306
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 89/291 (30%), Positives = 141/291 (48%), Gaps = 3/291 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F++I A +S + + + ++D G V+ + PASLTKLMT
Sbjct: 10 IFILIFCFAPISEAKKIVKNTNKHPIQTSLVIDAKNGKVLQAHNAQVRIYPASLTKLMTL 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ +K L + +S AS+ P + G +T+ A+ LI+KSAND+AV
Sbjct: 70 YLIFEAIESRKLSLDKKLLVSAKASKMPHCKLGLRAGDHITVREAINGLIIKSANDVAVT 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +EK F MN +K LG+ T F NA G+ TTARD+A L+ +K D+P
Sbjct: 130 VAEGMKGSEKAFAHLMNVRAKTLGMKNTFFKNASGLHDPFQQTTARDIAKLAIALKRDYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+Y F +G N + GA+GMKTGF +G+N+V +A + ++SLIAV
Sbjct: 190 KYYPLFSKTHFVFRGNVVNGHNSVTKHYQGAEGMKTGFHTPAGYNLVTTASRNNKSLIAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
I G +R++ LL + + + N +N
Sbjct: 250 ITGGKSAASRDQKMMRLLDH---HFGVKTITSKPSIKLASNNKANTKAKSK 297
>gi|294852342|ref|ZP_06793015.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
gi|294820931|gb|EFG37930.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. NVSL 07-0026]
Length = 410
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 2/290 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A ++ L + + + D ++G ++ ++ PASL K+MT Y+ F
Sbjct: 24 FFASVAFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEA 83
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 84 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 143
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 144 GSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYAL 203
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA
Sbjct: 204 FSQCSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAG 263
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
R+ A LL+ F + K + Q + P++ ++
Sbjct: 264 SAGQRDGQMAKLLTR-FGGVDNGKAAPLVAMAKPQAVTAKLKPDVVADLI 312
>gi|169334343|ref|ZP_02861536.1| hypothetical protein ANASTE_00741 [Anaerofustis stercorihominis DSM
17244]
gi|169259060|gb|EDS73026.1| hypothetical protein ANASTE_00741 [Anaerofustis stercorihominis DSM
17244]
Length = 369
Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats.
Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 20/324 (6%)
Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++ ++I+ M +++ A Y +++ + V+ + + AS T
Sbjct: 1 MKKKSIAIIIVMMILINLPNFGGVKAANVSAQAYCIMEAGSNRVLYSSNMNEKLPMASTT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MTA + L I I K + ++ K+G +TL++ L +++ S N
Sbjct: 61 KVMTAVLALEK-----GSLNDVIEIKKEWTGIEGTSIYLKEGEKLTLEDLLHGMMLVSGN 115
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D AV+IA + + F + MN +K LG+ THF N +G+ HYTTA D +L+
Sbjct: 116 DAAVSIACYIGGSIDNFAKMMNKKAKELGMKNTHFTNPNGLPDDDHYTTAYDFTLLASYA 175
Query: 178 KTDFPQYMHYFQIKGL-----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ K + + N N + ++ GA+G+KTGFT + V +A
Sbjct: 176 MKNENFVKIINDEKWSMPYEGKANQRTLYNKNKLLKSYEGANGVKTGFTKKARKCFVLAA 235
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI--IKDFYQQNLSNEVP 290
+ + ++ V+L + S L M F N T +K I +K + N +
Sbjct: 236 KRNNMQVVGVLLH---TENHYEESKMFLDMAFNNFTLKKVIEKGDYVKTVPMKGSKNGII 292
Query: 291 NISE--EVCTTQKEIINYNTQMKE 312
+S +V K + + K+
Sbjct: 293 KLSAGSDVYFPLKSDEIADVKYKK 316
>gi|205373775|ref|ZP_03226577.1| D-alanyl-D-alanine carboxypeptidase [Bacillus coahuilensis m4-4]
Length = 318
Score = 161 bits (406), Expect = 1e-37, Method: Composition-based stats.
Identities = 73/320 (22%), Positives = 123/320 (38%), Gaps = 19/320 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M L + + + + A L+D TG V+ E + AS+TK+M
Sbjct: 7 MAYLLTVFLLGSVCFRPLDVQAAPGVSAHSAILMDQETGRVLYEKNAEQQMKIASITKIM 66
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA V L +T+S NA+ S+ G M L++ L L+++S ND A
Sbjct: 67 TAIVAIESDD-----LQDTVTVSSNAAGTEGSSLYLVAGQKMKLEDLLYGLMLRSGNDSA 121
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE + + + FV MN ++ +G+ T+F N HG+ + + L + +
Sbjct: 122 VAIAEHVGGSLEGFVYLMNQKAEEIGMENTNFDNPHGLDDSDTHLSTSYDMALLMKYSMN 181
Query: 181 FPQYMHYFQIKGLEIKG------KKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAI 233
+ + + + N N + + G KTG+T + +V +A
Sbjct: 182 NETFQEISSTEVHKAPNPNGDWDYSWHNKNRLLTQLYEYCTGGKTGYTKLAKRTLVTTAE 241
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEV 289
+ + LIAV L D S+ GF IKD Y +
Sbjct: 242 KDGEKLIAVTLNGPDD---WNDHISMYEYGFDQFDYYVLAKKGSLSEIKDSYYKGKVYIK 298
Query: 290 PNISEEVCTTQKEIINYNTQ 309
I + +K+ + T+
Sbjct: 299 HEIKYSIKELEKKRLESITK 318
>gi|291532362|emb|CBL05475.1| D-alanyl-D-alanine carboxypeptidase [Megamonas hypermegale ART12/1]
Length = 376
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 84/321 (26%), Positives = 133/321 (41%), Gaps = 18/321 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ L+D TG V+ E PD PAS TK+MT + + + +
Sbjct: 26 QDMTAQAAILIDATTGRVLYEKNPDAKAMPASTTKMMTCILGLENAND-----DDIVEVD 80
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTS 142
K A S +G + + L+ ++ S ND A AIA + K + FVQ MN+ +
Sbjct: 81 KRAVGVEGSAIYINEGDKIKMSELLQATMLASGNDGAAAIAYYVGKGSLETFVQMMNDKA 140
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--- 199
K +G + THF N HG+ HYTTARD+A ++ ++ K EI+
Sbjct: 141 KEIGATNTHFNNPHGLTDPNHYTTARDLAKIARY-AYQNEKFRKIVSTKEQEIQWVNPAE 199
Query: 200 ----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN + + G+KTG+T A+G +VASA + +LIAV+L D R
Sbjct: 200 RKDIYGSTNRLLWNYDDVTGIKTGYTDAAGGCLVASAQKNGITLIAVVLKTSDSRARFVE 259
Query: 256 SASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISE--EVCTTQKEIINYNTQMK 311
+LL GF + + K + +I Y N +N + + N N
Sbjct: 260 GRALLDYGFKHIKEMKTVDEQKLISSIYTHNSTNYKTTVKPVQPFTYLVMDTDNVNDFSW 319
Query: 312 EAKDKESHFIDFEKITLLKNK 332
+ ++ +
Sbjct: 320 KMNLPAYIDAPLKQGAKVGTI 340
>gi|256061158|ref|ZP_05451311.1| D-alanyl-D-alanine carboxypeptidase [Brucella neotomae 5K33]
gi|261325163|ref|ZP_05964360.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
gi|261301143|gb|EEY04640.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella neotomae 5K33]
Length = 410
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 2/290 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A ++ L + + + D ++G ++ + PASL K+MT Y+ F
Sbjct: 24 FFASVAFGTAVLCASGAMASTSWVVFDADSGRMLGRDDASAQHAPASLAKMMTLYLTFEA 83
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 84 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 143
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 144 GSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYAL 203
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA
Sbjct: 204 FSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAG 263
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
R+ A LL+ F + K + Q + P++ ++
Sbjct: 264 SAGQRDGQMAKLLTR-FGGVDNGKAAPLVAMAKPQAVTAKLKPDVVADLI 312
>gi|317121890|ref|YP_004101893.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
marianensis DSM 12885]
gi|315591870|gb|ADU51166.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermaerobacter
marianensis DSM 12885]
Length = 541
Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats.
Identities = 78/303 (25%), Positives = 126/303 (41%), Gaps = 19/303 (6%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
+G V+ + P PAS TK++TA V + L +T+S+ A+ S
Sbjct: 215 SGQVLWAHNPHQRRAPASTTKILTAIVALEY-----GNLDDTVTVSEYAASTEGSTMDLS 269
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
G TL L L+++S ND AVAIAE + +E F + MN T+ LGL THF N HG
Sbjct: 270 AGERYTLRELLWGLMLESGNDAAVAIAEHISGSEAAFARLMNETALRLGLRDTHFTNPHG 329
Query: 158 VVQHGHYTTARDMAILSWRI-KTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG 212
+ GHYTTA D+A+++ D+ + K L + +TN +
Sbjct: 330 LHDPGHYTTAYDLAVMTRYALANDYFARLVCQPEKVLCRGDGDWVRILSSTNRLLWYREW 389
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR-- 270
G+KTG T A+G +V+S + + LIAV+L + D R S LL GF
Sbjct: 390 IRGVKTGTTNAAGPCLVSSGERDGRRLIAVVLDSGD---RWADSERLLEWGFRAFQPVDG 446
Query: 271 ----KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
+ + + + + ++ + + +++
Sbjct: 447 GRRGQVVGRVAVHDGSRRAVAARLDGDLSALVPPAVAGRVRRVVQLVRTVPAPVAPGQRL 506
Query: 327 TLL 329
+
Sbjct: 507 GTV 509
>gi|238650925|ref|YP_002916781.1| penicillin-binding protein dacF precursor [Rickettsia peacockii
str. Rustic]
gi|238625023|gb|ACR47729.1| penicillin-binding protein dacF precursor [Rickettsia peacockii
str. Rustic]
Length = 306
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 91/286 (31%), Positives = 138/286 (48%), Gaps = 3/286 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+V A +S + + ++D +G V+ + PASLTKLMT
Sbjct: 10 IFVVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIQIYPASLTKLMTL 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KSAND AV
Sbjct: 70 YLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVT 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ +K D+P
Sbjct: 130 VAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
++ F +G N + GA+GMKTGF +G+N+V +A + +SLIAV
Sbjct: 190 KFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ G +R++ LL + + + N S
Sbjct: 250 VTGGKSAASRDQKMMGLLD---QHFNIKPIVPKPSIKLASNNKSTT 292
>gi|319780264|ref|YP_004139740.1| serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317166152|gb|ADV09690.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 295
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 87/243 (35%), Positives = 136/243 (55%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
L++ + ++D TG + E PASLTK+MT Y++F L+ +
Sbjct: 33 SVLAVPAPAQKYAAIVVDARTGKQLFEVSSTAQRYPASLTKMMTLYLLFEALESGRVSKQ 92
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
T I +S +A+ PP+ F++G ++ +D+A++ ++VKSAND+AVA+ E L +E +F
Sbjct: 93 TQIPVSDHAASQPPTKMRFRRGESIDVDSAIRAIVVKSANDVAVAVGEYLGGSEDQFAAM 152
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
M + ++ LG+++T F NA G+ G TTARDMA+L + FPQ HYF +G
Sbjct: 153 MTSKARQLGMTSTTFRNASGLPDDGQMTTARDMAVLGMALHQRFPQQFHYFSESDFMFRG 212
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ N +G G DG+KTG+ ASGFNIV S ++LI V++GA RN
Sbjct: 213 RLVRGHNDMLGRVRGVDGIKTGYIRASGFNIVTSYNADGRNLIVVVMGADSARQRNDHVE 272
Query: 258 SLL 260
+L+
Sbjct: 273 ALI 275
>gi|163854196|ref|YP_001642239.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
extorquens PA1]
gi|163665801|gb|ABY33168.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylobacterium
extorquens PA1]
Length = 494
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 90/336 (26%), Positives = 163/336 (48%), Gaps = 12/336 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDHPWNPA 54
++++A + L + ++D +G + D +PA
Sbjct: 17 VLLLATSFLVAVADPAEAKRRGHARKAVSGYNPPYAAMVVDVKSGRTLHAVNEDALRHPA 76
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TK+MT Y++F L++ + L +P++IS NA+ PS + GST+T++ A+K L+ K
Sbjct: 77 SITKVMTLYMLFEQLEKGRYDLDSPLSISANAAAQAPSKLGLRPGSTVTVEEAIKALVTK 136
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND+A AI E++ +E +F + M +K +G+S TH+ NA G+ TTA D+ +L+
Sbjct: 137 SANDVACAIGENIAGSEPRFAEMMTRKAKAIGMSRTHYANASGLPDPDQITTAHDLTLLA 196
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ +A
Sbjct: 197 RAIQDRFPRYYRYFQTRSFAFRGRTIGNHNRLLGNVEGVDGIKTGYTRDSGFNLMTAAKL 256
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
GD+ ++A++LG +R+++ A L+ + + + ++ V
Sbjct: 257 GDRQIVAIVLGGKSGASRDRIMADLVRANLPRAFAGSRQTAPVVEVAERGRPAVVAEADS 316
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
T + ++ + +D T
Sbjct: 317 RTRTVLASAD--DEDIETTSSTSNAPLDIRPATTTP 350
>gi|118591400|ref|ZP_01548798.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stappia aggregata IAM
12614]
gi|118436072|gb|EAV42715.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stappia aggregata IAM
12614]
Length = 457
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 98/238 (41%), Positives = 146/238 (61%), Gaps = 1/238 (0%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y L+D ++G VI E W PASLTKLMTAYV F ++E +A L + + SKN++
Sbjct: 14 AYVLIDASSGAVIEEENATRKWYPASLTKLMTAYVTFKAIREGRASLDSAVVQSKNSAAE 73
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
PPS FK G+ T+D ALK++++KSAND+AVA+ E++ +E F+ MN ++ LG++
Sbjct: 74 PPSKMGFKVGTRFTVDTALKIILIKSANDVAVALGEAIGGSEAGFIAMMNVEAQRLGMTN 133
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-G 208
T F N HG+ + TTARD+AIL+ ++ DFP+ +++ G+ K + N
Sbjct: 134 TRFYNPHGLPDNRQVTTARDLAILALALRRDFPEARNFYDHPGIRFGKKTLRSANREFLL 193
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
GA+GMKTG+ C SG+N+ ASA +G+++LIA+ILGA R + L GF
Sbjct: 194 RVPGANGMKTGYICNSGYNVAASATRGNKTLIAIILGAGSGLERTAFARQLFDEGFRK 251
>gi|297529545|ref|YP_003670820.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
sp. C56-T3]
gi|297252797|gb|ADI26243.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
sp. C56-T3]
Length = 460
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 64/320 (20%), Positives = 125/320 (39%), Gaps = 25/320 (7%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L++ ++G V+ AS+TK+MTA + K + +T+S
Sbjct: 110 VSAKSAILIEQHSGRVLFAKDAYTKRRIASITKIMTAILAIESGK-----MDDTVTVSAR 164
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A S+ ++G + L + + L+++S ND AVAIAE + + + FV MN + +
Sbjct: 165 AVRTEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEI 224
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGK 198
G+ T F N HG+ ++ + + + ++ K +
Sbjct: 225 GMRDTEFANPHGLDDAENHYSTAYDMAMLMQYAMKNKEFRRISGTKVYRAPAPPGEDGAR 284
Query: 199 KYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ N N + + + G KTG+T + +V +A +G LIAV L A D
Sbjct: 285 VWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGVDLIAVTLDAPDD---WNDHI 341
Query: 258 SLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
++ GF + + + ++ I FY + V ++ V ++ + + +
Sbjct: 342 AMYEYGFSHYHIAKVSSERVVDKISDPFY-RGRLQAVRDLRYPVTDKEESGLRVKVYLLK 400
Query: 313 AKD---KESHFIDFEKITLL 329
+ K E +
Sbjct: 401 PRKGWEKYPERAPTEVGKAV 420
>gi|328676052|gb|AEB28727.1| D-alanyl-D-alanine carboxypeptidase [Francisella cf. novicida 3523]
Length = 444
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 91/373 (24%), Positives = 143/373 (38%), Gaps = 60/373 (16%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
P + ++ TG +++E D PASLTK+MT+Y+V S +K T I
Sbjct: 47 PANIELDAPAWVAMNYRTGDIVSEKNMDVRRAPASLTKIMTSYIVASEIKAGNLSWDTMI 106
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
IS+NA+ S K G+ +++ N + + V S ND +A+AE + T + F MN
Sbjct: 107 PISENAASTGGSKMYVKAGAKVSVKNLVTGMDVVSGNDATIALAEYIGGTTEAFTDLMNQ 166
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK- 199
T+K +G++ THF N G+ YTTA DMA+L+ +FP+ + KGL K
Sbjct: 167 TAKAIGMNNTHFANPDGLPGGEQYTTAHDMALLARSYIYNFPEAYKVYDDKGLVWNATKQ 226
Query: 200 ---------------------------------------------------YPNTNWAVG 208
N N +
Sbjct: 227 DSVSIADRKQCLPKFDRATGNVIESYTTKDLDDQAKDKCNKLFPKGDNFVLQNNRNRLLF 286
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
TF GADGMKTG T A+G+ +V+SA Q + I+V+LG R+ SA LL
Sbjct: 287 TFDGADGMKTGHTDAAGYCLVSSAKQDGERFISVVLGTTSSAKRDSESAKLLRYALSKYE 346
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-------SHFI 321
+ + +++ T + I + +
Sbjct: 347 NVLLYKAN-SPVTISADNIPNAKAGQKITVTSNQNIYKTVPKTYVPYLKQGIEFNTNLKA 405
Query: 322 DFEKITLLKNKIT 334
+ + N +
Sbjct: 406 PIKTGQTVGNLVI 418
>gi|85716353|ref|ZP_01047326.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
sp. Nb-311A]
gi|85696869|gb|EAQ34754.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
sp. Nb-311A]
Length = 582
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 81/249 (32%), Positives = 138/249 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D N+G ++ PD P +PASLTK+MT Y++F L + L + + +S +A+
Sbjct: 55 ASIVVDANSGATLSSVNPDSPRHPASLTKMMTLYMLFERLDAGRISLDSEMRVSAHAAAQ 114
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
P+ ++G T+ +++A+K L+ KSAND AV IAE++ E F + M ++ LG++
Sbjct: 115 DPTKLGLRQGQTIRVEDAIKGLVTKSANDAAVVIAEAIAGDEDDFARMMTRKARALGMTR 174
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T + NA G+ TTARD A L ++ FP+Y YF +G+ N +G+
Sbjct: 175 TVYRNASGLPDDDQITTARDQATLGRALQDRFPRYYRYFATTSFTFRGRTVRGHNRLIGS 234
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
G DG+KTG+ +SGFN+V + +G++ L+ V+LG ++R+ LL+
Sbjct: 235 VDGVDGIKTGYIRSSGFNLVTNIRRGNRHLVGVVLGGRSGSSRDATMRKLLAENLDKAAT 294
Query: 270 RKKINYIIK 278
R+ + I +
Sbjct: 295 RRTVAAIAE 303
>gi|256828650|ref|YP_003157378.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfomicrobium
baculatum DSM 4028]
gi|256577826|gb|ACU88962.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfomicrobium
baculatum DSM 4028]
Length = 401
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 85/253 (33%), Positives = 131/253 (51%), Gaps = 1/253 (0%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
++ +TG V E+ PD PAS+TKL+T Y++ L + + TPI +S A + S
Sbjct: 148 INMSTGDVYYEHNPDKTIAPASITKLLTLYIIREALAQGRLSQATPIPVSAEAVKTGGSR 207
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATHF 152
K+ + L +K + V SAN+ VA+AE K KFV MN +K +G+ + F
Sbjct: 208 MRLKRNEKVPLGELIKGISVVSANNACVAVAEYFGKGDPSKFVAQMNEKAKKIGMVNSRF 267
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
N +G+ G +TARD+A LS FP+ + + G + N N + T+ G
Sbjct: 268 KNPNGLPASGQLSTARDIAKLSVAYLRTFPESLKVHSMTSHTFHGATHRNANTLLRTYKG 327
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
DG+KTGF C +G+NI A+A +G L+AV+LGA + R + +A LL GF D +K
Sbjct: 328 VDGLKTGFVCDAGYNITATAKRGKTRLVAVVLGAQNSAVRQRETARLLDYGFRRAADEEK 387
Query: 273 INYIIKDFYQQNL 285
+ ++
Sbjct: 388 LANKTSAAAKKPK 400
>gi|225575599|ref|ZP_03784209.1| hypothetical protein RUMHYD_03691 [Blautia hydrogenotrophica DSM
10507]
gi|225037193|gb|EEG47439.1| hypothetical protein RUMHYD_03691 [Blautia hydrogenotrophica DSM
10507]
Length = 423
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 80/338 (23%), Positives = 137/338 (40%), Gaps = 21/338 (6%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ SN + L+D NTG ++ PAS+TK+MT +
Sbjct: 59 ITSNQIKGWPEGPKVEAGSAVLMDANTGAILYSKNAHKKLYPASITKIMTTALAMQRC-- 116
Query: 72 KKAMLTTPITISKN---ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+T S + SN G M + + + +++ SAN++A AIAE C
Sbjct: 117 ---NPDDTVTFSDYAITHQDVDSSNIGCLVGEQMKVSDCYRAIMLASANEVATAIAEQSC 173
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM--- 185
K FV+ MN T++ +G + THF NA+G+ HYTTA DMA+++ +
Sbjct: 174 GNLKNFVELMNQTARQIGCTRTHFNNANGLPDKHHYTTAHDMALIARYAWKNTQFRKVAT 233
Query: 186 ---HYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + L + + N + + + G G KTG+T A+G +V A +G +
Sbjct: 234 TLEYTIEPTNLYTEPRVLYNHHKMMSNTGYYYEGCLGGKTGYTQAAGNTLVTYAKRGHMT 293
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
LI V+L T +A+L GF N + + Y + + +
Sbjct: 294 LICVVLQDEGTYT-YTDTAALFDYGFNNFKNIQVEKKG--PKYLDINLDPLTQTVLDYRQ 350
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ + Y+ + + K T++ N I K
Sbjct: 351 SKSPMFAYHGYFITVPTEIDTDKIYAKTTIIPNPIGNK 388
>gi|225626417|ref|ZP_03784456.1| cobalamin synthesis protein P47K [Brucella ceti str. Cudo]
gi|260169446|ref|ZP_05756257.1| cobalamin synthesis protein P47K [Brucella sp. F5/99]
gi|225618074|gb|EEH15117.1| cobalamin synthesis protein P47K [Brucella ceti str. Cudo]
Length = 635
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 111/303 (36%), Positives = 175/303 (57%), Gaps = 7/303 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I A+ + A +D TG V + W PASLTK+M
Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAA----ANPSIAVDVATGKVYEQQDAFQRWYPASLTKMM 57
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+ + +++ +
Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVFAVQLRRE 177
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+
Sbjct: 238 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 296
Query: 299 TQK 301
Q
Sbjct: 297 EQA 299
>gi|312622483|ref|YP_004024096.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202950|gb|ADQ46277.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 374
Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats.
Identities = 81/344 (23%), Positives = 136/344 (39%), Gaps = 22/344 (6%)
Query: 1 MR-QFLVIIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+ + V+I +++ F + A ++ TG ++ E D
Sbjct: 1 MKARVFVLIFALIITTAFGKICYANEKKNLPQLSSKSAIAIEWVTGKILFEKNKDLKLPM 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK+MTA +V I I A P S+ +KG + + + L L++
Sbjct: 61 ASTTKIMTAILVLENCDV-----NKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLML 115
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD---- 169
S ND AVA+A + K+FV+ MN +K+LGLS T F + HG+ Q HYTTA D
Sbjct: 116 SSGNDAAVALAIATAGDVKRFVKLMNKKAKDLGLSNTVFSSPHGLEQGQHYTTAHDLAKL 175
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-PNTNWAVGTFLGADGMKTGFTCASGFNI 228
A ++ + N N + + GADG+KTGFT +G +
Sbjct: 176 TAYAMRNPIFRQIVKTKDIEVPWTTRPYNRILRNKNKMLRLYPGADGVKTGFTKKAGRCL 235
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
V S + D +I V+L A D + +L+ + N K + + +N ++
Sbjct: 236 VTSVCRDDFRVICVVLNAPD---MWNDTQKILNYCYNNFKVVKLLPDEMGYVKVKNGKSD 292
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++ + EK ++
Sbjct: 293 WVKVGTTYKCYWVVESSCLPKLDVI--LQVAEAPIEKNKVIGRL 334
>gi|15675077|ref|NP_269251.1| putative D,D-carboxypeptidase, penicillin-binding protein
[Streptococcus pyogenes M1 GAS]
gi|13622233|gb|AAK33972.1| putative D,D-carboxypeptidase, penicillin-binding protein
[Streptococcus pyogenes M1 GAS]
Length = 411
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 75/362 (20%), Positives = 149/362 (41%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++++++ M + + F L+ + +++ ++G V+ E P ASLTK
Sbjct: 2 IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 61
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKS 115
L+TAY+V +K + L+ + +S A E + T ++ + L +V S
Sbjct: 62 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTYSVQDLLTATLVAS 121
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M + G+++ +NA G+
Sbjct: 122 SNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEE 181
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+AI++ + DFP+ + + ++ G + N + G DG+K
Sbjct: 182 ENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLK 241
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ LI VIL A NTR + + LL RK +
Sbjct: 242 TGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKIL 301
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +++E+V ++ + + S K
Sbjct: 302 KKGSLVSERSLPIQDGQVKELPISVAEDVTIILQQGEQVPKPKQFMISETSLLAPITKGE 361
Query: 328 LL 329
++
Sbjct: 362 VV 363
>gi|222529271|ref|YP_002573153.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
bescii DSM 6725]
gi|222456118|gb|ACM60380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
bescii DSM 6725]
Length = 372
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 81/344 (23%), Positives = 136/344 (39%), Gaps = 22/344 (6%)
Query: 1 MR-QFLVIIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+ + V+I +++ F + A ++ TG ++ E D
Sbjct: 1 MKARVFVLIFALIITTAFGKICYANEKKNLPQLSSKSAIAIEWVTGKILFEKNKDLKLPM 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK+MTA +V I I A P S+ +KG + + + L L++
Sbjct: 61 ASTTKIMTAILVLENCDV-----NKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLML 115
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD---- 169
S ND AVA+A + K+FV+ MN +K+LGLS T F + HG+ Q HYTTA D
Sbjct: 116 SSGNDAAVALAIATAGDVKRFVKLMNKKAKDLGLSNTVFSSPHGLEQGQHYTTAHDLAKL 175
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-PNTNWAVGTFLGADGMKTGFTCASGFNI 228
A ++ + N N + + GADG+KTGFT +G +
Sbjct: 176 TAYAMRNPIFRQIVKTKDIEVPWTTRPYNRILRNKNKMLRLYPGADGVKTGFTKKAGRCL 235
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
V S + D +I V+L A D + +L+ + N K + + +N ++
Sbjct: 236 VTSVCRDDFRVICVVLNAPD---MWNDTQKILNYCYNNFKVVKLLPDEMGYVKVKNGKSD 292
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++ + EK ++
Sbjct: 293 WVKVGTTYKCYWVVESSCLPKLDVI--LQVAEAPIEKNKVIGRL 334
>gi|77464119|ref|YP_353623.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacter
sphaeroides 2.4.1]
gi|77388537|gb|ABA79722.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodobacter
sphaeroides 2.4.1]
Length = 355
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 71/311 (22%), Positives = 127/311 (40%), Gaps = 13/311 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
T V+ + P PAS++KLMT ++F L++ + + T +S A + S
Sbjct: 1 MTTHTVLLDKNAHEPLPPASMSKLMTLNMLFEALRDGRVTMETTFAVSTKAKQMGGSKMF 60
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
++ T++ + +IV S ND V +AE L TE F + M +K LG++ + F N+
Sbjct: 61 VEERDRPTVEELIHGIIVNSGNDACVVVAEGLNGTESDFARAMTVRAKALGMTDSTFTNS 120
Query: 156 HGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-------VG 208
G GH + D+ IL+ R+ +FP++ YF K + N N
Sbjct: 121 SGWPDPGHRMSVHDLGILAVRLIEEFPEFYPYFSHTEFNYKDRVPSNANNRNPLLRLGPN 180
Query: 209 TFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
ADG+KTG T +G+ +V SA + + ++ V+ G R + +++ F
Sbjct: 181 GDWTADGLKTGHTQEAGYGLVGSAVQKDGRRIVFVLTGLATEADRAQEGEQIVNWAFRQF 240
Query: 268 TDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + + D + N S +E+V ++ + E
Sbjct: 241 VQKTLVTKGQRVTEADVWLGNASRVGLVPAEDVKLLVPALVQ-DNVTAEVSYTGPLRAPI 299
Query: 324 EKITLLKNKIT 334
L +
Sbjct: 300 AAGQELAELVI 310
>gi|144901274|emb|CAM78138.1| Predicted peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
[Magnetospirillum gryphiswaldense MSR-1]
Length = 425
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 99/234 (42%), Positives = 142/234 (60%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D +G V+ ++ P +PASLTK+MT YV F L E K L +T+S+ A+
Sbjct: 51 IVVDATSGAVLEQDQAGQPRHPASLTKMMTLYVAFQALSEGKTSLNATLTVSERAAGQGG 110
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S K G T+ L +ALK L+V+SAND AVAIAE + TE F Q M ++ LG++AT
Sbjct: 111 SVLGLKTGKTIALADALKSLVVRSANDAAVAIAEHVAGTEDSFAQRMTEQARRLGMTATS 170
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
F NA G+ GH TTARDMA+L+ +K DFPQ+ F + + P N V ++
Sbjct: 171 FRNATGLTAPGHLTTARDMAVLAMALKRDFPQHWPLFATTSMRWGSSQLPTVNGFVTSYP 230
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
GA+G+KTGFTC +G+N+ A+A + +S IAVI+GA + R ++ SLL+ F
Sbjct: 231 GAEGLKTGFTCPAGYNLAAAASRNGRSAIAVIMGAAAKEQRLALTTSLLNKAFA 284
>gi|254709015|ref|ZP_05170826.1| cobalamin synthesis protein P47K [Brucella pinnipedialis B2/94]
gi|256030540|ref|ZP_05444154.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1]
gi|256158532|ref|ZP_05456426.1| cobalamin synthesis protein P47K [Brucella ceti M490/95/1]
gi|265987587|ref|ZP_06100144.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1]
gi|264659784|gb|EEZ30045.1| cobalamin synthesis protein P47K [Brucella pinnipedialis M292/94/1]
Length = 635
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 112/303 (36%), Positives = 176/303 (58%), Gaps = 7/303 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I A+ + A +D TG V + W PASLTK+M
Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAA----ANPSIAVDVATGKVYEQQDAFQRWYPASLTKMM 57
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ +
Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 177
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++A++LGA + TR +A +++ F ++ ++ NL+ V ++ + +C+
Sbjct: 238 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV-DMRKAICS 296
Query: 299 TQK 301
Q
Sbjct: 297 EQA 299
>gi|227815684|ref|YP_002815693.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. CDC 684]
gi|254682367|ref|ZP_05146228.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. CNEVA-9066]
gi|254721249|ref|ZP_05183039.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A1055]
gi|254733782|ref|ZP_05191496.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Western North America USA6153]
gi|254740527|ref|ZP_05198218.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Kruger B]
gi|254753916|ref|ZP_05205951.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Vollum]
gi|254759012|ref|ZP_05211039.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Australia 94]
gi|227004936|gb|ACP14679.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
CDC 684]
Length = 374
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K + +S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----ERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGN-ETFKEIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + +D K+
Sbjct: 292 KNSFSVPLTEEEKKSVVLKVELDKSAKLVDGVKVGK 327
>gi|306832771|ref|ZP_07465907.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus bovis ATCC
700338]
gi|304425120|gb|EFM28250.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus bovis ATCC
700338]
Length = 416
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 69/367 (18%), Positives = 132/367 (35%), Gaps = 34/367 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++ A+ + A + ++ TG V+ E P AS+T
Sbjct: 5 MKKIFAFFAIFLTFLAVGSKVSADDDFDVSAEHAIAVEATTGKVLYEKDATTPDGIASMT 64
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA- 116
K++T Y+V+ + E K T ++IS A ++ +L+
Sbjct: 65 KILTVYLVYKAIDEGKISWDTKVSISDYAYNLTANSDASNVPMEAREYTVEQLVNAAMVA 124
Query: 117 --NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160
N A+A+AE + TE KFV M + G++ +NA G+
Sbjct: 125 SANSAAIALAEQIGGTESKFVDMMKAQLEVWGITDATIVNASGLNNSYLGDNIYPGSSST 184
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGM 216
+ +ARD+AI++ + T++P + + G N+ + G DG+
Sbjct: 185 DENMMSARDVAIIAQHLITEYPDILKITSQTTADFDGTTMNTYNYMLEGMPYERSGVDGL 244
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKK 272
KTG T +G + VA++ + +I+V++ A R + + LL N
Sbjct: 245 KTGTTELAGASFVATSTENGMRIISVVMNADGWEDDEYARFEATNDLLDYVKSNYEMVTL 304
Query: 273 INYII-----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ K + V ++ E + IN + + + + + K
Sbjct: 305 VKAGKSYQSSKATVNDGKAKSVAAVASEDLKVVR-RINTDVSADFSTNADGYDAPITKGQ 363
Query: 328 LLKNKIT 334
+
Sbjct: 364 KVGTITY 370
>gi|302388530|ref|YP_003824352.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
saccharolyticum WM1]
gi|302199158|gb|ADL06729.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
saccharolyticum WM1]
Length = 519
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 82/347 (23%), Positives = 139/347 (40%), Gaps = 33/347 (9%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWN 52
+++F + + + L + S+A + L+D +TG V+ + +
Sbjct: 5 IKKFSIFFLCLLFLVSSNTETSLAAEDWPSGISVQAQGAILMDADTGTVLWGQNIHNQYF 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALK 109
PAS+TK+MTA +V L +T S NA SN+ +G +++ + L
Sbjct: 65 PASITKVMTALLVIENC-----SLDETVTFSHNAVYNVESGSSNAGINEGDKLSVKDCLY 119
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
L++KSAN+ A A+AE + + + F MN +K LG + THF N G+ HYT+ D
Sbjct: 120 ALLLKSANESANALAEHVAGSTEAFADMMNTRAKELGCTNTHFSNPSGLNNPEHYTSPYD 179
Query: 170 MAILSWRIKTDF-------PQYMHYFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKT 218
MA+++ + Y + YP + G G KT
Sbjct: 180 MALIARAAFNNPVFGEIDSTTYYKLPPNSINKEGLTIYPGHKMMRKSTPYYYPGIVGGKT 239
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
G+T +G +V A + LI +IL + +LL+ GF N K
Sbjct: 240 GYTTLAGNTLVTCAERNGLKLITIILKGSTP-QYWSDTKNLLNFGFDNFVSLKAA----- 293
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
D + S + T+ E + + + K + F D +
Sbjct: 294 DHEKTYSSITSDLSFSGLTITKPEALILDPDSRIILPKTASFSDAKP 340
>gi|319767311|ref|YP_004132812.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
sp. Y412MC52]
gi|317112177|gb|ADU94669.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
sp. Y412MC52]
Length = 460
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 66/322 (20%), Positives = 127/322 (39%), Gaps = 23/322 (7%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L++ ++G V+ AS+TK+MTA + K + +T+S
Sbjct: 110 VSAKSAILIEQHSGRVLFAKDAYTKRRIASITKIMTAILAIESGK-----MDDTVTVSAR 164
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A S+ ++G + L + + L+++S ND AVAIAE + + + FV MN + +
Sbjct: 165 AVRTEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEI 224
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGK 198
G+ T F N HG+ ++ + L + ++ K +
Sbjct: 225 GMRDTEFANPHGLDDAENHYSTAYDMALLMQYAMKNKEFRRISGTKVYRAPAPPGEDGAR 284
Query: 199 KYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ N N + + + G KTG+T + +V +A +G LIAV L A D
Sbjct: 285 VWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAPDD---WNDHI 341
Query: 258 SLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
++ GF + + + ++ I FY + V ++ V ++ + + +
Sbjct: 342 AMYEYGFSHYHIAKVSSERVVDKISDPFY-RGRLQAVRDLRYPVTDKEESGLQVKVYLLK 400
Query: 313 AKDKESHFIDFEKITLLKNKIT 334
+ KE T + +
Sbjct: 401 PR-KEWKKYPERAPTEVGKAVL 421
>gi|209518827|ref|ZP_03267640.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160]
gi|209500712|gb|EEA00755.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia sp. H160]
Length = 273
Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats.
Identities = 81/261 (31%), Positives = 125/261 (47%), Gaps = 9/261 (3%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+D +G ++ E+ D PASLTKLMTAY+ LK + ++
Sbjct: 1 MLVDGESGQILLEHNADAKRQPASLTKLMTAYIALDALKHGSVRWDEKVAVNTADIGEVG 60
Query: 92 ---SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
+ G + + + ++ LI SAND A+ +A + T F Q MN+ ++ LG++
Sbjct: 61 GDEARMYLVPGQQVPVRDLVQGLIAASANDAALVLARRVGGTPAGFEQLMNDIARKLGMA 120
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
THF G+ G+Y+TARD++ L+ R+ DFPQY + + + N NW +G
Sbjct: 121 HTHFSTPSGITTPGNYSTARDLSTLAMRLTKDFPQYYTFSSEQHFVYGKFEKRNKNWLLG 180
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGD------QSLIAVILGALDRNTRNKVSASLLSM 262
DGMKTG T A+G+ IVA+A + + + AVILGA N R + SLL+
Sbjct: 181 KDPSVDGMKTGHTQAAGYCIVATAKRKQTAPPMMRRVFAVILGAPTANDRITGAGSLLNY 240
Query: 263 GFYNKTDRKKINYIIKDFYQQ 283
F D + +
Sbjct: 241 AFSAYKDYPLTDDAGHHVVTR 261
>gi|15892459|ref|NP_360173.1| penicillin-binding protein dacF precursor [Rickettsia conorii str.
Malish 7]
gi|15619614|gb|AAL03074.1| penicillin-binding protein dacF precursor [Rickettsia conorii str.
Malish 7]
Length = 306
Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 91/286 (31%), Positives = 139/286 (48%), Gaps = 3/286 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+V A +S + + ++D +G V+ + PASLTKLMT
Sbjct: 10 IFVVTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTL 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KSAND+AV
Sbjct: 70 YLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDVAVT 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ +K D+P
Sbjct: 130 VAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHNPLQQTTARDMAKLAMALKRDYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
++ F +G N + GA+GMKTGF +G+N+V +A + +SLIAV
Sbjct: 190 KFYPLFAKTSFVFRGNVVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ G +R++ LL + + + N S
Sbjct: 250 VTGGKSAASRDQKMMGLLD---QHFNIKPIVPKPSIKLASNNKSTT 292
>gi|146296825|ref|YP_001180596.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410401|gb|ABP67405.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 452
Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 84/353 (23%), Positives = 143/353 (40%), Gaps = 32/353 (9%)
Query: 5 LVIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ ++ +L P S E L++ NTG ++ + P+ PAS TK
Sbjct: 15 IALLIFLILFIPVPVYSKEESNTLLSDINAKSAILIEANTGQILFQKNPNSRCFPASTTK 74
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSA 116
++TA V S K L +SKNA P S+ +G T++ +AL +++ SA
Sbjct: 75 ILTALVALSKEK----DLDKLFKVSKNAIMIEPGSSSYYLNEGETISFQDALYAMLLISA 130
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A IAE++ + ++FV+ MN ++N+G +HF+N G+ HYTTA D+++++ +
Sbjct: 131 NDAANVIAENISGSIQEFVKEMNQFAQNIGAKDSHFVNPSGLHNPQHYTTAYDLSLIARQ 190
Query: 177 IKTDFP--------QYMHYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCA 223
+ +Y + + N N + + A+GMKTG+T
Sbjct: 191 AYKNETLRKIVSTVEYKITTASMHKKPDWQIIYNINKLLRKNSKYYYPYANGMKTGYTAQ 250
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
+ ++ASA + D LIAVIL + + LL GF N +
Sbjct: 251 AKRCLIASAKKDDIDLIAVIL---SSDDAFADAIKLLDYGFNNFRKEELFKQNQIIGKVM 307
Query: 284 NLSNEVP----NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
I + + N + K T++ N
Sbjct: 308 VDKVNKKWIDGYIKSSFYVLKNQNTNSEDITYRITFLKDIKPPINKDTVIGNV 360
>gi|288904540|ref|YP_003429761.1| penicillin-binding protein 5 (D-alanyl-D-alanine carboxypeptidase)
[Streptococcus gallolyticus UCN34]
gi|325977511|ref|YP_004287227.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|288731265|emb|CBI12815.1| putative penicillin-binding protein 5 (D-alanyl-D-alanine
carboxypeptidase) [Streptococcus gallolyticus UCN34]
gi|325177439|emb|CBZ47483.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
5/6) [Streptococcus gallolyticus subsp. gallolyticus
ATCC BAA-2069]
Length = 412
Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 69/367 (18%), Positives = 133/367 (36%), Gaps = 34/367 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++ A+ + A + ++ TG V+ E P AS+T
Sbjct: 1 MKKIFAFFAIFLTFLAVGSKVSADDDFDVAAEHAIAVEATTGKVLYEKDATTPDGIASMT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA- 116
K++T Y+V+ + E K T ++IS A + ++ +L+
Sbjct: 61 KILTVYLVYKAIDEGKLSWDTKVSISDYAYDLTANSDASNVPMEAREYTVEQLVNAAMVA 120
Query: 117 --NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160
N A+A+AE + TE KFV M + G++ +NA G+
Sbjct: 121 SANSAAIALAEQIGGTESKFVDMMKAQLEEWGITDATIVNASGLNNSYLGDNIYPGSSST 180
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGM 216
+ +ARD+AI++ + T++P + + G N+ + G DG+
Sbjct: 181 DENMMSARDVAIIAQHLITEYPDILKITSQTTADFDGTTMNTYNYMLEGMPYERSGVDGL 240
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKK 272
KTG T +G + VA++ + +I+V++ A R + + LL N
Sbjct: 241 KTGTTELAGASFVATSTENGMRIISVVMNADGWEDDEYARFEATNDLLDYVKSNYEMVTL 300
Query: 273 INYII-----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ K + V ++ E + IN + + + + + K
Sbjct: 301 VKAGKSYQSSKATVNDGKAKSVAAVASEDLKVVR-RINTDVSADFSTNADGYDAPITKGQ 359
Query: 328 LLKNKIT 334
+
Sbjct: 360 KIGTITY 366
>gi|239947237|ref|ZP_04698990.1| penicillin-binding protein DacF [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921513|gb|EER21537.1| penicillin-binding protein DacF [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 306
Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 91/286 (31%), Positives = 138/286 (48%), Gaps = 3/286 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+ A +S + + ++D +G V+ + PASLTKLMT
Sbjct: 10 IFISTFFFAPISEAKKAVKNTPKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTL 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KSAND AV
Sbjct: 70 YLMFESIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVT 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE++ +EK F MN +K LG+ T+F NA G TTARDMA L+ +K D+P
Sbjct: 130 VAENMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+Y F +G N + GA+GMKTGF +G+N+V +A + +SLIAV
Sbjct: 190 KYYPLFAKTSFVFRGNIVNGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ G +R++ LL + + + N S
Sbjct: 250 VTGGKSAASRDQKMMGLLD---QHFNIKPIVPKPSIKLASNNKSTT 292
>gi|222152530|ref|YP_002561705.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J]
gi|222113341|emb|CAR40940.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis
0140J]
Length = 400
Score = 160 bits (403), Expect = 3e-37, Method: Composition-based stats.
Identities = 77/362 (21%), Positives = 141/362 (38%), Gaps = 32/362 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ L I + + L +A+ ++ TG ++ + + ASL
Sbjct: 1 MKKTILSTIIVGLFLWTPSTLVLAQEKLVINAKQAIAVECETGKILYQKEANQKAPIASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TK++T Y+ +K K TP+ +S A P ++ T T+ + +V
Sbjct: 61 TKILTVYLTLKEIKNGKISWDTPVKMSDYAKELANNPDVSNPSLYKDTFTVKELIDSSMV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------V 159
S+N A+++AE++ +E +FV M + G+ +NA G+
Sbjct: 121 VSSNSAAISLAETIAGSEPQFVDMMKKQLQTWGIQDYQLVNASGLNNSMLNGHLYPKSKP 180
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADG 215
+ +A+++AI++ + ++FP+ + L N+N + G DG
Sbjct: 181 NDENQLSAKNLAIVASHLISEFPEILAISSQSQLYWGNDVLQNSNHLLPGLSMGRLGVDG 240
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDR- 270
+KTG T +G + +A+Q + +I VIL A D R + L F N
Sbjct: 241 LKTGTTGCAGQTYIGTAVQDNMRVIVVILHANNAEQDSEARFVEANKLFDFAFQNFQSIT 300
Query: 271 --KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
K Y K +V IS + T + + + K ++K EK
Sbjct: 301 IPKAKPYATKLAIIDGKKKKVAFISHKDFTIVQPKNDDSINYKVIQEKSKTKAPIEKDEK 360
Query: 329 LK 330
L
Sbjct: 361 LG 362
>gi|148988291|ref|ZP_01819738.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
[Streptococcus pneumoniae SP6-BS73]
gi|147925972|gb|EDK77046.1| penicillin-binding protein 3/D-alanyl-D-alanine carboxypeptidase
[Streptococcus pneumoniae SP6-BS73]
Length = 406
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 145/360 (40%), Gaps = 31/360 (8%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y+V+
Sbjct: 1 MLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVY 60
Query: 67 SFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
L+ L+TP+ IS + +++ + T++ L+ +V SAN A+A+
Sbjct: 61 EALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSANSAAIAL 120
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARD 169
AE + +EK FV M G+ +N G+ + +A D
Sbjct: 121 AEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYD 180
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASG 225
+AI++ + +PQ + + G +TN+ + G DG+KTG T +G
Sbjct: 181 VAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAG 240
Query: 226 FNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYII---- 277
+ V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 ESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQD 300
Query: 278 --KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ E++ ++ + ++ D ++ E T++ + +
Sbjct: 301 SKAPVQDGKEDTVIAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTVVGHLTYE 360
>gi|306841800|ref|ZP_07474484.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2]
gi|306288114|gb|EFM59506.1| D-alanyl-D-alanine carboxypeptidase [Brucella sp. BO2]
Length = 370
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 79/272 (29%), Positives = 135/272 (49%), Gaps = 2/272 (0%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ + D ++G ++ ++ PASL K+MT Y+ F LK + + ISKNA
Sbjct: 2 ASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNA 61
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ K G T++ +A+ +I+ SAND A + E L +E F + M ++ +G
Sbjct: 62 ASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIG 121
Query: 147 LSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
+ +T F N G+ TTARDMA+L ++ DFP+ F + +G+ Y N
Sbjct: 122 MKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNN 181
Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ F
Sbjct: 182 LMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTR-FG 240
Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
+ K + Q + + P++ ++
Sbjct: 241 GVDNGKAAPLVAMAKPQAVTAKQKPDVVADLI 272
>gi|118590830|ref|ZP_01548230.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Stappia
aggregata IAM 12614]
gi|118436352|gb|EAV42993.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Stappia
aggregata IAM 12614]
Length = 295
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 91/251 (36%), Positives = 145/251 (57%), Gaps = 3/251 (1%)
Query: 14 SNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ P ++ A + +L+ +TG + D P PASL+K+MT Y++F +
Sbjct: 42 AAPLPAVAYAPETAVERGFSALVLNASTGEELYAVDADAPRYPASLSKMMTLYLLFEAVS 101
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
E + L+TP+++S A+ PP+ K GST+T++ A + L VKSAND+A+ +AE+L +
Sbjct: 102 EGRYSLSTPLSVSAKAASEPPAKIGLKAGSTITVEEAARALAVKSANDVAIVVAENLAGS 161
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
E F + M + ++ LGLS T F+NA G+ ++ARDMA+L +K FPQY Y++
Sbjct: 162 EAAFARQMTSQARALGLSRTRFVNATGLPDPAQVSSARDMAVLGLTLKRRFPQYASYYRA 221
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K G+ + TN VG G DG+KTG+ SG+N+VA+A +G + LI V++G
Sbjct: 222 KSFSYNGRTFRATNNLVGKVAGVDGLKTGYIRMSGYNLVATANRGGKRLIVVVMGGASEA 281
Query: 251 TRNKVSASLLS 261
R+K L+
Sbjct: 282 ARDKEVTRLIE 292
>gi|148559912|ref|YP_001259847.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
gi|148371169|gb|ABQ61148.1| D-alanyl-D-alanine carboxypeptidase [Brucella ovis ATCC 25840]
Length = 352
Score = 160 bits (403), Expect = 4e-37, Method: Composition-based stats.
Identities = 112/316 (35%), Positives = 182/316 (57%), Gaps = 7/316 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ N
Sbjct: 4 AAANPSIAVDVATGKVYEQQDAFQRWYPASLTKMMTAYVTFRALQSGQMTLESPVRMTVN 63
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
AS+ PPS +K GS MTLD AL +++VKSAND++VA+AE++ TE FVQ MN ++ L
Sbjct: 64 ASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVSVAVAEAVGGTEAAFVQRMNAEARRL 123
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NT 203
G+ +HF N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ K N
Sbjct: 124 GMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVEANY 183
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
N +G + GADGMKTGF CASGFN+ SA + ++++A++LGA + TR +A +++
Sbjct: 184 NILLGRYDGADGMKTGFVCASGFNLAGSATRNGRTVLAIVLGADRQETRAIQAAQMMTDA 243
Query: 264 FYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK----ESH 319
F ++ + NL+ V ++ + +C+ Q ++ + E + K H
Sbjct: 244 FRARSSGGPTLATLHPAQTANLNQAV-DMRKAICSEQAMADRWDGREVEGRLKINSPYIH 302
Query: 320 FIDFEKITLLKNKITK 335
+D + I + +++
Sbjct: 303 AMDHDPIAVQVRLVSE 318
>gi|228914143|ref|ZP_04077761.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228932855|ref|ZP_04095722.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228945169|ref|ZP_04107525.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228814404|gb|EEM60669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228826776|gb|EEM72543.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228845476|gb|EEM90509.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 378
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 5 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 64
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K + +S A S K G + L++ + L+++S
Sbjct: 65 TKIMTALLAAESGKMK-----ERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 179
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 180 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 295
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + +D K+
Sbjct: 296 KNSFSVPLTEEEKKSVVLKVELDKSAKLVDGVKVGK 331
>gi|196036818|ref|ZP_03104207.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
W]
gi|196047629|ref|ZP_03114836.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
03BB108]
gi|218902679|ref|YP_002450513.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH820]
gi|225863432|ref|YP_002748810.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
03BB102]
gi|301053108|ref|YP_003791319.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
gi|195990547|gb|EDX54526.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
W]
gi|196021543|gb|EDX60243.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
03BB108]
gi|218536387|gb|ACK88785.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH820]
gi|225788779|gb|ACO28996.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102]
gi|300375277|gb|ADK04181.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
anthracis str. CI]
Length = 374
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K + +S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----ERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + +D K+
Sbjct: 292 KNSFSVPLTEEEKKSVVLKVELDKSAKLVDGVKVGK 327
>gi|323164088|gb|EFZ49896.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella sonnei 53G]
gi|332761340|gb|EGJ91626.1| D-alanyl-D-alanine carboxypeptidase dacC [Shigella flexneri
2747-71]
Length = 284
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 78/274 (28%), Positives = 124/274 (45%), Gaps = 16/274 (5%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + A+ + Y L+D N+G V+AE D
Sbjct: 10 MKRLALTTALCTAFISAAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADVRR 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLD 105
+PASLTK+MT+YV+ +K K T +TI +A K G + +
Sbjct: 70 DPASLTKMMTSYVIGQAMKAGKFKETDLVTIGNDAWATGNPVFKGSSLMFLKPGMQVPVS 129
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ + ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y+
Sbjct: 130 QLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYS 189
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCAS 224
+ARDMA++ + D P ++ K G + N N + DG+KTG T +
Sbjct: 190 SARDMALIGQALIRDVPNEYSIYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTDKA 249
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
G+N+VASA +G LI+ ++G R S +
Sbjct: 250 GYNLVASATEGQMRLISAVMGGRTFKGREAESKN 283
>gi|329116584|ref|ZP_08245301.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
NCFD 2020]
gi|326906989|gb|EGE53903.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
NCFD 2020]
Length = 406
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 73/362 (20%), Positives = 143/362 (39%), Gaps = 31/362 (8%)
Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPASL 56
M++ + +I+ ++L A ++++TG ++ E + ASL
Sbjct: 1 MKKLIVKLILTTSLLVTFSAQTVFAADFSADSRHAIAVESDTGKILYEKSGNKKAPIASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TKL+T Y+ +K K + +S+ A P ++ T ++ + ++
Sbjct: 61 TKLLTIYITLKEIKAGKISWNDQVKLSEYAQSLATDPEISNPPLTSDTYSVKELVDSSLI 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------------- 160
SAN A+A+AE + +E KFV M + G++ +++ G+
Sbjct: 121 VSANSSAIALAEYIAGSEPKFVDMMKKQVEQWGITDYLLVDSSGLPNSLLKGHTYPGSSP 180
Query: 161 -HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADG 215
+ +A+ +AI+++ + DFP+ + + + ++N+ + G DG
Sbjct: 181 KDENMLSAKSLAIIAYHLIHDFPEVLQITSQPQMIWGYETLYSSNYLLPGQEMGRAGVDG 240
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRK 271
+KTG T +G +A+A + + LI V+L A D R + LL F N +
Sbjct: 241 LKTGTTNLAGQTYIATATENNMRLITVLLHANHTKEDHYARFTQTNQLLDYCFQNYQKKL 300
Query: 272 KINYIIK-DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA-KDKESHFIDFEKITLL 329
+ + + IS + T I NT K + K K +K +
Sbjct: 301 MVKKDQPLPNRIAVENGKKDKISIKTKTNIYAIHKINTAPKLSFKSKNKLVAPIKKNQFI 360
Query: 330 KN 331
Sbjct: 361 GT 362
>gi|49481056|ref|YP_035686.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49332612|gb|AAT63258.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 374
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 84/336 (25%), Positives = 136/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K + +S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----ERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + +D KI
Sbjct: 292 KNSFSVPLTEEEKKSVVLKVELDKSAKLVDGVKIGK 327
>gi|49474221|ref|YP_032263.1| penicillin-binding protein [Bartonella quintana str. Toulouse]
gi|49239725|emb|CAF26104.1| Penicillin-binding protein [Bartonella quintana str. Toulouse]
Length = 387
Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats.
Identities = 82/349 (23%), Positives = 145/349 (41%), Gaps = 13/349 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
MR L I+ I + LLD +T ++ E D P+ PASL K
Sbjct: 1 MRTTLRILFTLFWMLILDGWGRAQDFQTSASQLLLLDNDTDTILFEKQSDIPFFPASLVK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIV 113
LMTA VVF LK+ T +S+NA + K + +++ + L+ LI+
Sbjct: 61 LMTAEVVFYQLKQGLLSSTQTFEVSENAWRKGGAPSGTTTMFAKVKTKISVSDLLRGLII 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+ ND A+ +AE + +E F + MN ++ LGLS +HF+N G+ + G T RDM +L
Sbjct: 121 VNGNDAAITLAEGISGSEADFAKLMNQRARTLGLSHSHFVNPTGLSEEGQLVTLRDMIVL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ I +P Y + N N + +G +G G++ GF++V +A
Sbjct: 181 ARHIAHTYPNYYALYSEPNFTWNKIFQRNKNPLISKEMGVEGFAFGYSEKEGFSMVVAAY 240
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEV 289
+ + L I G D K +L G + Y ++
Sbjct: 241 KNHRRLFLAINGLQDGKGHTKEIERILQWGMTAFDLKTIFIKGETVGHASVYGGTQNSVP 300
Query: 290 PNISEEVC--TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ E + + ++ +N ++K ++ + + + +++ KK
Sbjct: 301 LIVKEPISFMLSNEKKMNVKAKIKHRGPLKAPIVLGQPVGVIQILEDKK 349
>gi|315222027|ref|ZP_07863938.1| beta-lactamase [Streptococcus anginosus F0211]
gi|315188993|gb|EFU22697.1| beta-lactamase [Streptococcus anginosus F0211]
Length = 413
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 76/366 (20%), Positives = 149/366 (40%), Gaps = 32/366 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++F++ + +L + P + + + +D TG ++ E + P AS+TKL
Sbjct: 1 MKKFIITLVTTLLIFLAPTVLADNFEVGAKHAIAVDVATGKILYEKDANQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+TAY+V+ + + K L T + IS + P +++ + T++ L+ ++ SA
Sbjct: 61 LTAYLVYEAIHQGKFTLQTSVDISDYPYQLTVNPDASNVPLEARKYTVEELLETSLIASA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---------------H 161
N A+A+AE + +EKKFV M + G+ +NA G+
Sbjct: 121 NSPAIALAEKVAGSEKKFVDLMKAKLQQWGIKDATIVNASGLNNSVLGEEHIYPGSGKED 180
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217
+ +A D+AI++ R+ D+P+ + Q G ++N + G DG K
Sbjct: 181 ENKMSAHDVAIIARRLILDYPEVLEITQKATSNFAGMTLTSSNHMLKNMPAFRAGVDGFK 240
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILG----ALDRNTRNKVSASLLSMGFYNKTDRKKI 273
TG + G + V + Q LI V+L D N R ++ ++ + T + +
Sbjct: 241 TGTSDKGGSSFVGTIQQRGMRLITVLLNVNHADEDENARFTATSRFMTYIYQQFTVQTIV 300
Query: 274 NYIIK-----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+EV ++ + T + + + DK + +K +
Sbjct: 301 KKGEAYNKSSARVINGKKDEVTAVASKKLTIVRRYNHKKPTVHFTTDKNGYPTPLKKGVV 360
Query: 329 LKNKIT 334
+
Sbjct: 361 VGKLTY 366
>gi|218289386|ref|ZP_03493620.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
acidocaldarius LAA1]
gi|218240492|gb|EED07673.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
acidocaldarius LAA1]
Length = 456
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 76/292 (26%), Positives = 131/292 (44%), Gaps = 10/292 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D +TG V+ +P PAS+TK+MT + L + LT +T S
Sbjct: 67 PSIVSQAAVVMDMDTGAVVYAKHPTALHYPASITKIMT-----ALLALRLGRLTDVLTAS 121
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+A PP + G TL + L L++ SAND AV IAE + F MN ++
Sbjct: 122 PDAVRQPPDKLYMRVGEKATLKDLLYGLLIDSANDAAVEIAERYGGSVAHFADMMNAEAR 181
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GKK 199
LG + THF+N G+ H TTA DMA+++ P++ + E K
Sbjct: 182 ALGATHTHFVNPSGLPDPRHVTTAYDMAVIAR-AAMQIPEFRTIVDTRSYEWKGTAWQAT 240
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N + T+ GA G+KTGFT + +V +A +G + +AV++ + + +L
Sbjct: 241 LTNLNRMLFTYPGAIGVKTGFTSVAHETLVVAATRGGTTFLAVLMDCPTDAEIRQDATNL 300
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
L+ F + ++ + + + + P ++ E I + ++
Sbjct: 301 LNYAFSHYETQRILPAGYRAGFVMARDGQDPVVTAEPVLATVPIDHPLDVIE 352
>gi|320547987|ref|ZP_08042268.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus equinus
ATCC 9812]
gi|320447333|gb|EFW88095.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus equinus
ATCC 9812]
Length = 419
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 64/361 (17%), Positives = 128/361 (35%), Gaps = 31/361 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + +A+ + + + ++ TG V+ E P AS+TK++
Sbjct: 11 MKKVIAALAILLAFIGSSVYADDFDVAAKHAIAVEATTGKVLYEKDATTPAGIASMTKIL 70
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA---N 117
T Y+ + + T + IS A + ++ +L+ N
Sbjct: 71 TVYLTYKEIDNGNLSWDTKVPISDYAYDLTANSDASNVPMEAHEYTVEQLVNAAMVASAN 130
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGH 163
A+A+AE + +E FV M G++ +NA G+ +
Sbjct: 131 SAAIALAEQIGGSESNFVDMMKAQLNEWGITDAKLVNASGLNNSYLSDNIYPESSSTDEN 190
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
+ARD+AI++ + T++P + + G N+ + G DG+KTG
Sbjct: 191 MLSARDIAIIARHLITEYPDVLKISSQTTADFDGSTMNTYNYMLKDMPYERDGVDGLKTG 250
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINY 275
T +G + VA++ + +I+V++ A R + + LL N I
Sbjct: 251 TTELAGASFVATSTENGMRIISVVMNADGWEENDFARFEATNELLDYVKSNYEITTIIEA 310
Query: 276 II-----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
K + VP ++ + I + K + + + K +
Sbjct: 311 GQSYKNSKAKVKDGKEKTVPVVAAQDLNVV-HRIGTDVSAKFSSKAKGYEATINKGDKVG 369
Query: 331 N 331
Sbjct: 370 K 370
>gi|225574472|ref|ZP_03783082.1| hypothetical protein RUMHYD_02547 [Blautia hydrogenotrophica DSM
10507]
gi|225038322|gb|EEG48568.1| hypothetical protein RUMHYD_02547 [Blautia hydrogenotrophica DSM
10507]
Length = 396
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 72/341 (21%), Positives = 136/341 (39%), Gaps = 14/341 (4%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++A A+ +N L++ TG ++ + D PAS TK+MTA VV
Sbjct: 13 VLAAAITTNSIAGWPQGPEIVDETGVLMEAETGTILYDKGMDQRMYPASTTKIMTALVVL 72
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
++ + +T T +K + +N + G +T++ L ++ SAN+++ +AE
Sbjct: 73 ENTEDLQTKITFTETGTKEVTP-DSANIQAQLGEELTVEQCLYASLLASANEVSSQLAEF 131
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP---- 182
+ T++ FV+ MN ++ LG S THF N +G+ HYTTA D+A++ +
Sbjct: 132 VGGTKEHFVEMMNLKAQELGCSDTHFTNPNGLPDENHYTTAHDLALIMQAAIQNETFREI 191
Query: 183 --QYMHYFQIKGLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ + N + + GA KTG T A+ +V +A +
Sbjct: 192 ESTQTYTIPATNKTATPRNLTNHHAMLVSGNPSYYEGAFAGKTGHTDAAKDTLVTAAEKN 251
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
+LI V+L + + + +L + GF + + ++
Sbjct: 252 GMTLICVVLKSDNGQV-VADTINLFNYGFEQFQRLPMTEKDETKSGGYAIVPKNI-TKDQ 309
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
V + Q ++ + EK+T +K
Sbjct: 310 VQVQENADGELIQQTYTWQNVQVGSAAVEKVTPTPTPQPEK 350
>gi|332981601|ref|YP_004463042.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
50-1 BON]
gi|332699279|gb|AEE96220.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mahella australiensis
50-1 BON]
Length = 439
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 88/370 (23%), Positives = 137/370 (37%), Gaps = 43/370 (11%)
Query: 1 MRQFLVIIAMAMLSNIF---------------------PFLSIAETNKLPYYTLLDTNTG 39
M++ L++I M +L + + L+D TG
Sbjct: 1 MKKKLLVIPMLILYILALAAYIPVAYAEPTSNDTLADDATVLSPPAVSAKNLILIDAKTG 60
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP---SNSTF 96
+ + PD PAS+TK++TA + L +TI + AS P S
Sbjct: 61 NALYSINPDQKAYPASITKILTAAIALEQ-----GNLKDVVTIDEEASLGIPAGSSAIVM 115
Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
KG TL+ L L++ S ND AVAIA+ + T +FV MN +K G +HF N H
Sbjct: 116 DKGEQFTLEQLLYGLMLISGNDAAVAIAKHISGTTDEFVNLMNQKAKEWGAKNSHFANPH 175
Query: 157 GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI------KGLEIKGKKYPNTNWA---- 206
G HYTTA DMA+++ T K L +++ N N+
Sbjct: 176 GFHNDNHYTTAYDMAMIARHAMTIPKFRDIVSTTLYLDIPKTLRGDQRRWDNINFFVQPN 235
Query: 207 -VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ GA G+KTG+T + +VASA LIAV++G + K +A+L+ GF
Sbjct: 236 SKYYYKGATGIKTGYTNQAHHTLVASAQHNGTELIAVLMGEPSKPVAWKDAAALMDYGFN 295
Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVC---TTQKEIINYNTQMKEAKDKESHFID 322
+ + E V S
Sbjct: 296 AFARKIIATKGTPLGTVNITNGSTSESIEAVLDRDIDVMVPKVSEIIQPSVHLPSSITAP 355
Query: 323 FEKITLLKNK 332
++ ++ +
Sbjct: 356 IKEGDVVGSV 365
>gi|228926600|ref|ZP_04089669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228832976|gb|EEM78544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 378
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 5 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 64
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K + +S A S K G + L++ + L+++S
Sbjct: 65 TKIMTALLAAESGKMK-----ERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 179
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 180 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 295
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + +D K+
Sbjct: 296 KNSFSVPLTEEEKKSVVLKVELDKSAKLVDGVKVGK 331
>gi|223983850|ref|ZP_03634014.1| hypothetical protein HOLDEFILI_01295 [Holdemania filiformis DSM
12042]
gi|223964174|gb|EEF68522.1| hypothetical protein HOLDEFILI_01295 [Holdemania filiformis DSM
12042]
Length = 412
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 78/340 (22%), Positives = 140/340 (41%), Gaps = 17/340 (5%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+++ + +A+ M+ + L+D ++G V+ E D PAS
Sbjct: 1 MKKWFKGLAALALAINMMPALSIKAEEELNLDGESAVLIDADSGAVLYEKNADDRHYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MT Y+ S + + T I + + S+ G ++L +A I+ S
Sbjct: 61 ITKIMTVYLALSQGNPDQMLTATDTAI--DNIDRKSSHIWLDYGEELSLKDACYAAIMAS 118
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND + +AE++ ++++F MN + G THF NAHG+ HYTTA DMA+++
Sbjct: 119 ANDASNVLAEAIGGSQEEFAGLMNEAAAAAGAKNTHFANAHGLPDEDHYTTAYDMAMITR 178
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYP----------NTNWAVGTFLGADGMKTGFTCASG 225
+ + +K K + A G K G+T +G
Sbjct: 179 MAMKNAAFAEVFGTVKYEMQPTNKQKDVRYFASGNDMLKKGEFFYEYATGGKIGWTEDAG 238
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285
+ IV +A + +LIAV+L ++N R + +L GF N ++ +
Sbjct: 239 YTIVTTASKDGVNLIAVVLKNSNKNARYTDTRALFDYGFANYKQITIPASSFEEKTIEIK 298
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ + + I T E++ S ++ EK
Sbjct: 299 KRGQLWATAKFKMSYDFKILAKTNDDESQYTASVIVENEK 338
>gi|23501950|ref|NP_698077.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
gi|161619022|ref|YP_001592909.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
23365]
gi|254704362|ref|ZP_05166190.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
686]
gi|260566392|ref|ZP_05836862.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
gi|261755034|ref|ZP_05998743.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
686]
gi|23347896|gb|AAN29992.1| D-alanyl-D-alanine carboxypeptidase [Brucella suis 1330]
gi|161335833|gb|ABX62138.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella canis ATCC
23365]
gi|260155910|gb|EEW90990.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella suis bv. 4 str. 40]
gi|261744787|gb|EEY32713.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis bv. 3 str.
686]
Length = 410
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 2/290 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A + L + + + D ++G ++ ++ PASL K+MT Y+ F
Sbjct: 24 FFASVVFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEA 83
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 84 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 143
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 144 GSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYAL 203
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA
Sbjct: 204 FSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAG 263
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
R+ A LL+ F + K + Q + P++ ++
Sbjct: 264 SAGQRDGQKAKLLTR-FGGVDNGKAAPLVAMAKPQAVTAKLKPDVVADLI 312
>gi|312135096|ref|YP_004002434.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
owensensis OL]
gi|311775147|gb|ADQ04634.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
owensensis OL]
Length = 382
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 82/339 (24%), Positives = 133/339 (39%), Gaps = 21/339 (6%)
Query: 2 RQFLVIIAMAM----LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
R F++I+ M + + ++ TG ++ D AS T
Sbjct: 11 RVFVLILLMIVNTEVAVTCYASEKNLPQVSSKSAIAIEWMTGKILFRKNEDLKLPMASTT 70
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MTA +V I I A S+ +KG + + + L L++ S N
Sbjct: 71 KIMTAILVLENCDV-----NKEIEIPPQAVGVQGSSMYLEKGEKLKIIDLLYGLMLSSGN 125
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD----MAIL 173
D AVA+A KKFV MN +K LGLS T F + HG+ Q HYTTA D A
Sbjct: 126 DAAVALAIVTAGDVKKFVNLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLALLTAYA 185
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKY-PNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
++ + N N + + GA+G+KTGFT +G +V SA
Sbjct: 186 MKNPIFRQIVKTTEKEVPWTTRPYNRILRNKNKMLRLYPGAEGVKTGFTKKAGRCLVTSA 245
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ D +I V+L A D + +L + N K + + + ++N
Sbjct: 246 CRDDFRVICVVLNAQD---MWNDTRKILDYSYRNF---KVLKFPPGEIGYVKVNNGKMGW 299
Query: 293 SEEVCTTQKE-IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ T QK +++ + + + EK ++
Sbjct: 300 VKVGTTHQKYWVVDSDCFPRIDVLIQPLDAPVEKNKVIG 338
>gi|163843338|ref|YP_001627742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
gi|163674061|gb|ABY38172.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brucella suis ATCC 23445]
Length = 410
Score = 159 bits (402), Expect = 5e-37, Method: Composition-based stats.
Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 2/290 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A + L + + + D ++G ++ ++ PASL K+MT Y+ F
Sbjct: 24 FFASVVFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEA 83
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 84 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 143
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 144 GSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYAL 203
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F + +G+ Y N + + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA
Sbjct: 204 FSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAG 263
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
R+ A LL+ F + K + Q + P++ ++
Sbjct: 264 SAGQRDGQKAKLLTR-FGGVDNGKAAPLVAMAKPQAVTAKLKPDVVADLI 312
>gi|302871919|ref|YP_003840555.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
obsidiansis OB47]
gi|302574778|gb|ADL42569.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
obsidiansis OB47]
Length = 373
Score = 159 bits (401), Expect = 5e-37, Method: Composition-based stats.
Identities = 80/333 (24%), Positives = 132/333 (39%), Gaps = 15/333 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
FL+I++ + + ++ TG ++ + D AS TK+MTA
Sbjct: 9 IFLLIVSTELAKICYANEKNLPQVSSKSAIAIEWMTGKILFKKNEDLKLPMASTTKIMTA 68
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+V I I A P S+ +KG + + + L L++ S ND AVA
Sbjct: 69 ILVLENCDV-----NKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSGNDAAVA 123
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD----MAILSWRIK 178
+A KKFV MN +K LGLS T F + HG+ Q HYTTA D A
Sbjct: 124 LAIVTAGDVKKFVNLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLALLTAYAMKNPI 183
Query: 179 TDFPQYMHYFQIKGLEIKGKKY-PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
++ + N N + + GA+G+KTGFT +G +V SA + D
Sbjct: 184 FRQIVKTTEKEVPWTTRPYNRILRNKNKMLRLYPGAEGVKTGFTKKAGRCLVTSACRDDF 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
+I V+L A D + +L + N K + Y + + ++ +
Sbjct: 244 RVICVVLNAQD---MWNDTRKILDYSYRNFKVLKL--PPGEIGYVKVNNGKMGWVKVGTT 298
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +++ + K + EK ++
Sbjct: 299 HQKYWVVDSDCFPKIDMLMQPLDAPVEKNKVIG 331
>gi|332654087|ref|ZP_08419831.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
D16]
gi|332517173|gb|EGJ46778.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcaceae bacterium
D16]
Length = 453
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 80/372 (21%), Positives = 134/372 (36%), Gaps = 38/372 (10%)
Query: 1 MRQ-------FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M++ +V I +L L+D N V+ E P
Sbjct: 1 MKKYRLFALVLVVSIMTTLLLPFQSLALEPPEFHGKNAILVDANYDEVLYEVGGHDKVYP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPSNSTFKKGSTMTLDNALKLL 111
AS+TK+MTA + ++ K T +T S S + K G +T++ L L
Sbjct: 61 ASITKVMTALLTLEAIESGKLTAQTQVTASATAATIPEGSSTANIKAGEVLTVEQLLYCL 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ SAN+ A +AE++ FV MN+ +K LG THF N HG HYTT D+
Sbjct: 121 LLPSANEAAQILAETVGGDIDTFVGMMNDKAKELGCENTHFANPHGFHDPDHYTTPYDIT 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKY-------------PNTNWAVGTFLGADGMKT 218
+ ++ + I N + + G KT
Sbjct: 181 LFMK-AAMEYDLFQKIVTSPNYTIPATNLSEQRTVRNTNALTSNWTYTGYLYTPGTGGKT 239
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNT---------RNKVSASLLSMGFYNKTD 269
G T +G +V +A +GD LI+V++G ++ T + + LL+ GF N
Sbjct: 240 GSTDEAGKCLVETAKKGDTYLISVVMGEPEKVTLADGTEVVAQFYDTIQLLNWGFENFQR 299
Query: 270 RKKINYIIKDFYQQNLSNEVPN-----ISEEVCTTQKEIINYNTQMKEAKD-KESHFIDF 323
+ + S + T + +N + K ++
Sbjct: 300 TVISEDSEVVAKVNVTLSTQSDQVMVRPSGSIARTLPKDVNVDEMEKVINLFNDTVEAPV 359
Query: 324 EKITLLKNKITK 335
E+ +L + K
Sbjct: 360 EQGQVLGTMVLK 371
>gi|311028943|ref|ZP_07707033.1| D-alanyl-D-alanine carboxypeptidase dacA [Bacillus sp. m3-13]
Length = 459
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 77/398 (19%), Positives = 152/398 (38%), Gaps = 64/398 (16%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDH 49
M++ F+ ++ + ++ +IFP S L++ +TG +I + D
Sbjct: 1 MKRSFKQLFVGLLVLTLMVSIFPGKSAQAEENDFLNINAKAAILIEFSTGKIIYQKNVDE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-----NSTFKKGSTMTL 104
AS+TK+MT Y++ +++ K + + +S A N +K T+
Sbjct: 61 ALPVASMTKMMTEYLLLEAIEDGKLDWSKEVILSDYAQAISQKYPELSNVPMRKQEPYTI 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------ 158
+ + + SAN +A+AE++ +E KFV+ MN ++ +GL +F+N+ G+
Sbjct: 121 KELYEAMAIYSANGATIALAEAIAGSETKFVEMMNAKAEEIGLENYNFVNSTGLNNEDLA 180
Query: 159 ------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YP 201
+A+D A L+ R+ TD+P+ + I + P
Sbjct: 181 VGGVPMHPEGTDANEETTLSAKDTARLAHRLLTDYPEILDTASIPFKVFREGTPDAIDMP 240
Query: 202 NTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN----- 250
N N F G DG+KTG T A+GFN +A + +I+V++ +
Sbjct: 241 NWNKMLFTEELKVQFEGIDGLKTGSTDAAGFNFTGTAERDGMRVISVVMNTTNDEGVSTE 300
Query: 251 -TRNKVSASLLSMGFYNKTDRKKI-------NYIIKDFYQQNLSNEVPNISEEVCTTQK- 301
+R + L++ F + + + I + + E T K
Sbjct: 301 ISRFIETKKLMTHAFGSYSVEELFPGEYQMEGESILPVTKGKEDSVEIQTKEPFKTLVKD 360
Query: 302 -EIINYNTQMKEAKDKESHF----IDFEKITLLKNKIT 334
N+ Q + + + ++ +
Sbjct: 361 GNKDNFKPQFEINEKLLNEEGELTAPVKEGDSVGVMTV 398
>gi|332076153|gb|EGI86619.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
GA41301]
Length = 406
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 144/360 (40%), Gaps = 31/360 (8%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y+V+
Sbjct: 1 MLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVY 60
Query: 67 SFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
L+ L+TP+ IS + +++ + T++ L+ +V SAN A+A+
Sbjct: 61 EALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSANSAAIAL 120
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARD 169
AE + +EK FV M G+ +N G+ + +A D
Sbjct: 121 AEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYD 180
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASG 225
+AI++ + +PQ + + G +TN+ + G DG+KTG T +G
Sbjct: 181 VAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAG 240
Query: 226 FNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYII---- 277
+ V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 ESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQD 300
Query: 278 --KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E++ ++ + ++ D ++ E T++ + +
Sbjct: 301 SKTPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTVVGHLTYE 360
>gi|240850634|ref|YP_002972034.1| penicillin-binding protein [Bartonella grahamii as4aup]
gi|240267757|gb|ACS51345.1| penicillin-binding protein [Bartonella grahamii as4aup]
Length = 387
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 80/343 (23%), Positives = 147/343 (42%), Gaps = 11/343 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ +L+ + LLD +TG ++ E D P+ PASL KLMT V
Sbjct: 7 ILLTLWGILAFDTWGRAEGFQISASQLLLLDDDTGTILYEKQSDIPFFPASLAKLMTVEV 66
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDI 119
VF LKE T +S+NA + K + +++ + L+ LI+ + ND
Sbjct: 67 VFHHLKEGLLKSTQKFKVSENAWRKGGAPSGTTTMFAKIKTEISVSDLLRGLIIMNGNDA 126
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ +AE + E F + MN +K +GLS +HF+NA G+ + G + T RDM IL+ I
Sbjct: 127 AIILAEGISGHEAHFAKLMNQRAKIVGLSQSHFVNATGLPEEGQFVTVRDMIILARHIVQ 186
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
++P Y ++ N N + +G +G G++ GF++VA+ + + L
Sbjct: 187 EYPDYYALYREPHFTWNNIFQRNKNPLISKEIGVEGFGFGYSGKEGFSMVATISKNHRRL 246
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEE 295
I G D K +L G + Y + + +
Sbjct: 247 FLAINGLQDGKKYTKEIERILQWGMTAFDLKTIFTKEEAVGRASVYGGTQNFVPLIVKKP 306
Query: 296 VC--TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + ++ +N ++K ++ + + + +++ KK
Sbjct: 307 ISFMLSNEKKVNVKAKIKYHGPLKAPIVSGQSVGVIQILEDKK 349
>gi|118477025|ref|YP_894176.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
Hakam]
gi|118416250|gb|ABK84669.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
Hakam]
Length = 386
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 13 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 72
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K + +S A S K G + L++ + L+++S
Sbjct: 73 TKIMTALLAAESGKMK-----ERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 127
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 128 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 187
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 188 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 246
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 247 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 303
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + +D K+
Sbjct: 304 KNSFSVPLTEEEKKSVVLKVELDKSAKLVDGVKVGK 339
>gi|85708665|ref|ZP_01039731.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter sp. NAP1]
gi|85690199|gb|EAQ30202.1| D-alanyl-D-alanine carboxypeptidase [Erythrobacter sp. NAP1]
Length = 403
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 72/324 (22%), Positives = 124/324 (38%), Gaps = 8/324 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ +LP L+D +G V+ D + PAS+TK+MT + F ++E
Sbjct: 44 PAPVPAQTELPIALLVDVTSGQVLYSRNADRRFVPASITKVMTLFHAFELIEEGDLDPRQ 103
Query: 79 PITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ +S E S G + +D+ L + SAND + +AE + ++
Sbjct: 104 TLVMSDEVWEEWGGEGSTMWINAGDRVAVDDLLTGIANISANDGSAMLAEGQAGSISAWL 163
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGH-YTTARDMAILSWRIKTDFPQYM-HYFQIKGL 193
MN +++L + +HF +G G +TTA D+ L+ + + PQ Y G
Sbjct: 164 DGMNQRARSLEMVNSHFGTPNGWPDEGRTFTTASDLVKLAQALISRHPQKYARYIGKPGF 223
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ N + +G GADG+KTG+T SG V SA + Q L+ V+ G + R
Sbjct: 224 RYNDIEQFNRDPMIGRVAGADGIKTGYTNESGLGYVGSAKRDGQRLVVVVAGISRGSIRA 283
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+ + L+ GF + Q S V +E +
Sbjct: 284 RAARDLIEWGFDAFDRERLYANGEVVARARVQGGNSRSVALQTERDVFVNVPKGRLSELS 343
Query: 311 KEAKDKESHFIDFEKITLLKNKIT 334
+ F+ + +
Sbjct: 344 LRVEYDGPLRAPFDSGDHVATLVV 367
>gi|319654383|ref|ZP_08008470.1| hypothetical protein HMPREF1013_05090 [Bacillus sp. 2_A_57_CT2]
gi|317393882|gb|EFV74633.1| hypothetical protein HMPREF1013_05090 [Bacillus sp. 2_A_57_CT2]
Length = 389
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 79/283 (27%), Positives = 124/283 (43%), Gaps = 15/283 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M+Q +V+I +A L + F A L+D NTG ++ E PASLT
Sbjct: 1 MKQVIVLIFIASLFSGFQKTIHASDSPVVSSGSAILIDANTGEILFEKKATEEMYPASLT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+ TA L ++I N + + ++G ++L ++ L++ S N
Sbjct: 61 KIATAIYAIEK-----GNLNDIVSIGSNPRKIEGTRVYLEEGERVSLRKLIQGLLINSGN 115
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D VAIAE + + + F +++N+ LGL T FMN HG+ H TTA D+A L+
Sbjct: 116 DAGVAIAEHMDGSIETFSKNLNSYLAGLGLKNTVFMNPHGLFNPEHVTTAEDLATLTQY- 174
Query: 178 KTDFPQYMHYFQIKGLEIKGKKY------PNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
+ ++ F K LE KG + + + G G KTG+ SG +V +
Sbjct: 175 AMENQEFSEIFGTKELEWKGATWKTTLYTHHKLMRELPYEGVIGGKTGYVDQSGHTLVTA 234
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
A + + SLI V L A + + LL GF +
Sbjct: 235 AKRKELSLIVVTLNASSQELAYDDTKKLLDYGFNHYKTSSIAK 277
>gi|111657944|ref|ZP_01408652.1| hypothetical protein SpneT_02000863 [Streptococcus pneumoniae
TIGR4]
gi|149007183|ref|ZP_01830847.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP18-BS74]
gi|147761221|gb|EDK68188.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP18-BS74]
Length = 406
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 144/360 (40%), Gaps = 31/360 (8%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y+V+
Sbjct: 1 MLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVY 60
Query: 67 SFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
L+ L+TP+ IS + +++ + T++ L+ +V SAN A+A+
Sbjct: 61 EALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSANSAAIAL 120
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARD 169
AE + +EK FV M G+ +N G+ + +A D
Sbjct: 121 AEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYD 180
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASG 225
+AI++ + +PQ + + G +TN+ + G DG+KTG T +G
Sbjct: 181 VAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAG 240
Query: 226 FNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYII---- 277
+ V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 ESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQD 300
Query: 278 --KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E++ ++ + ++ D ++ E T++ + +
Sbjct: 301 SKAPVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTVVGHLTYE 360
>gi|15895327|ref|NP_348676.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
ATCC 824]
gi|15025043|gb|AAK80016.1|AE007708_12 D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum
ATCC 824]
gi|325509472|gb|ADZ21108.1| D-alanyl-D-alanine carboxypeptidase [Clostridium acetobutylicum EA
2018]
Length = 351
Score = 159 bits (401), Expect = 6e-37, Method: Composition-based stats.
Identities = 75/326 (23%), Positives = 132/326 (40%), Gaps = 14/326 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R ++ + + +L+ + +D+NT ++ E D AS TK+MT
Sbjct: 5 RSIVLALIVCILTPATFAKADKLNLNARCAIAIDSNTKMILYEKNADMIVPMASTTKIMT 64
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ V + L TISK A+ S +K G +TL L L+++S ND A+
Sbjct: 65 SLVAIKY-----GNLDKKFTISKKAASIRGSKVGYKAGEEITLRELLYGLMLRSGNDAAI 119
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
IAE + +KF MN + +G +HF HG+ + HY TA D+A ++ K +
Sbjct: 120 CIAEGIAGNTEKFADLMNEYAYKIGAFNSHFQTPHGLDKDLHYCTAYDLAFITSVAKENK 179
Query: 182 PQYMHYFQIKGLEIKG---KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + Y N N + GADG+KTG+T +G +V+S
Sbjct: 180 VFNDIVSSKDVGSGQYGFTRSYHNINKILYQIPGADGVKTGYTGNAGKCLVSSVKMNGHD 239
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEE 295
+I V+L R K + + N +K ++ + +
Sbjct: 240 VIFVVLNCT---PRWKETKRMYEYVKKNYEYKKMVSKGDVVYSGNVLNGGGKVKLLAPSD 296
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFI 321
+ + Y+ ++ +KD +S +
Sbjct: 297 IYIPCSKNKIYSKKVIVSKDIKSPIL 322
>gi|229138262|ref|ZP_04266857.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
gi|229195769|ref|ZP_04322529.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
gi|228587666|gb|EEK45724.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
gi|228645154|gb|EEL01391.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
Length = 378
Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats.
Identities = 81/336 (24%), Positives = 131/336 (38%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ + L++ +G V+ P AS+
Sbjct: 5 MRRICVIITLLIMYASVIPIPTYAKMTSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 65 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 179
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 180 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 295
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + +D K+
Sbjct: 296 KNSFSVPLTEEEKKSVVLKVELDKSAKLVDGVKVGK 331
>gi|206978265|ref|ZP_03239143.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
H3081.97]
gi|217959045|ref|YP_002337593.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH187]
gi|222095199|ref|YP_002529259.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
gi|206743514|gb|EDZ54943.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
H3081.97]
gi|217067033|gb|ACJ81283.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH187]
gi|221239257|gb|ACM11967.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
Length = 374
Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats.
Identities = 81/336 (24%), Positives = 131/336 (38%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ + L++ +G V+ P AS+
Sbjct: 1 MRRICVIITLLIMYASVIPIPTYAKMTSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + +D K+
Sbjct: 292 KNSFSVPLTEEEKKSVVLKVELDKSAKLVDGVKVGK 327
>gi|157803860|ref|YP_001492409.1| penicillin-binding protein DacF precursor [Rickettsia canadensis
str. McKiel]
gi|157785123|gb|ABV73624.1| Penicillin-binding protein DacF precursor [Rickettsia canadensis
str. McKiel]
Length = 306
Score = 159 bits (401), Expect = 7e-37, Method: Composition-based stats.
Identities = 90/263 (34%), Positives = 136/263 (51%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+ A +S + + ++D +G V+ + P PASLTKLMT
Sbjct: 10 IFIATFFFAPISEAKKNVQNTLKPPVQTSLVIDAKSGKVLQSHNSQIPIYPASLTKLMTL 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KSAND AV
Sbjct: 70 YLMFESIEAGKLSLDKKLFVSAKASQMPPCKLGLKAGETITVREAINGLIIKSANDAAVT 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE++ +EK F MN +K LG+ T+F NA G TTARD+A L+ +K D+P
Sbjct: 130 VAENMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDIAKLAMALKRDYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+Y F +G N + GA+GMKTGF +G+N+V +A + +SLIAV
Sbjct: 190 KYYPLFSKTSFVFRGNIINGHNRVTKNYQGAEGMKTGFHTPAGYNLVTTASRNGKSLIAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFY 265
+ G+ +R++ LL F
Sbjct: 250 VTGSRSAVSRDQKMIGLLDHYFN 272
>gi|306830534|ref|ZP_07463702.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|304427328|gb|EFM30432.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
Length = 416
Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats.
Identities = 69/367 (18%), Positives = 133/367 (36%), Gaps = 34/367 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++ A+ + A + ++ TG V+ E P AS+T
Sbjct: 5 MKKIFAFFAIFLTFLAVGSKVSADDDFDVAAEHAIAVEATTGKVLYEKDATTPDGIASMT 64
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA- 116
K++T Y+V+ + E K T ++IS A + ++ +L+
Sbjct: 65 KILTVYLVYKAIDEGKLSWDTKVSISDYAYDLTANSDASNVPMEAREYTVEQLVNAAMVA 124
Query: 117 --NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160
N A+A+AE + TE KFV M + G++ +NA G+
Sbjct: 125 SANSAAIALAEQIGGTESKFVDMMKAQLEEWGITDATIVNASGLNNSYLGDNIYPGSSST 184
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGM 216
+ +ARD+AI++ + T++P + + G N+ + G DG+
Sbjct: 185 DENMMSARDVAIIAQHLITEYPDILKITSQTTADFDGTTMNTYNYMLEGMPYERSGVDGL 244
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKK 272
KTG T +G + VA++ + +I+V++ A R + + LL N
Sbjct: 245 KTGTTELAGASFVATSTENGMRIISVVMNADGWEDDEYARFEATNDLLEYVKSNYEMVTL 304
Query: 273 INYII-----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ K + V ++ E + IN + + + + + K
Sbjct: 305 VKAGKSYQSSKATVNDGKAKSVAAVASEDLKVVR-RINTDVSADFSTNADGYDAPITKGQ 363
Query: 328 LLKNKIT 334
+
Sbjct: 364 KIGTITY 370
>gi|317057431|ref|YP_004105898.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
albus 7]
gi|315449700|gb|ADU23264.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
albus 7]
Length = 382
Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats.
Identities = 71/333 (21%), Positives = 133/333 (39%), Gaps = 16/333 (4%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
LV++ + L+ I + + +TG V+ E D P AS TK+M+A +
Sbjct: 15 LVLLMIFTLNTINAKAESKLQISAKAAIVYNGSTGEVLFEKNADEPLPMASTTKIMSALI 74
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
V L T+ A S+ ++G ++L + +++ S ND A A A
Sbjct: 75 VLEQED-----LDERFTVDSEAVNTEGSSMGLREGDEVSLRDLACGMLLPSGNDAANAAA 129
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--GHYTTARDMAILSWRIKTDFP 182
+ + + FV MN ++ LGL +THF+ G+ + HY+TARDMA+L+ +
Sbjct: 130 VRVAGSIENFVGMMNERAEKLGLESTHFVTPSGLDDYTDDHYSTARDMAVLAAEAMENQD 189
Query: 183 ----QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ +++ +++ + G G+KTGFT + +V+S ++
Sbjct: 190 FRDICGLQRVKLEFGCPPYERWLINTNKLLKNHGITGIKTGFTDKARRCLVSSCMREGCE 249
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE--V 296
LI V L D K +L GF + K +V + +
Sbjct: 250 LICVTLNDPDD---WKDHMALFDYGFSHVEQVKLSPKQHDIRLMTADGRQVLCKVPDMVI 306
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
T+ +++ + + +K+ +
Sbjct: 307 TMTRDGASRSESRVYLPDFIYAPVNNGDKVGEI 339
>gi|295091424|emb|CBK77531.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
saccharolyticum K10]
Length = 474
Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats.
Identities = 78/264 (29%), Positives = 112/264 (42%), Gaps = 24/264 (9%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ K L D V+ E D PAS+TKLMTA +V L+
Sbjct: 82 AGQTAVPQIKSDAAVLYDATHDRVLYEKNADAQHYPASITKLMTALLVLEHC-----SLS 136
Query: 78 TPITISK---NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+T S+ E K G T++ L L++KSAN+IA +AE + + F
Sbjct: 137 DTVTFSQSAVTNLESGAVTLGVKAGDQFTIEQCLYGLLLKSANEIANGLAEHVSGSVSSF 196
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM-------------AILSWRIKTDF 181
MN + +LG + THF+N +G+ HYTTARDM ++ + DF
Sbjct: 197 ADLMNQKAASLGCTGTHFVNPNGLNDPNHYTTARDMALIAEAAFENPTLCRIASTVNYDF 256
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P ++ L + K N N + G G KTG+T +G +V + LIA
Sbjct: 257 PATASVPSVRKLTMG-HKMVNPNNKEYYYEGIVGGKTGYTSLAGNTLVTCVERNGTRLIA 315
Query: 242 VILGALDRNTRNKVSASLLSMGFY 265
VIL R T + +LL GF
Sbjct: 316 VIL--KSRQTHYADTKALLDYGFS 337
>gi|288553434|ref|YP_003425369.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
gi|288544594|gb|ADC48477.1| D-alanyl-D-alanine carboxypeptidase S11 serine type [Bacillus
pseudofirmus OF4]
Length = 374
Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats.
Identities = 72/342 (21%), Positives = 135/342 (39%), Gaps = 18/342 (5%)
Query: 2 RQFLVIIAMAMLSN-IFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+ ++++ ++ L P + A + L+D TG + PAS+T
Sbjct: 10 KSIMLLLCVSFLIAQAVPQQAKASDTPVIESETAVLIDGATGETLWGKDSTKRMYPASVT 69
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K++TA V L + +S+N + + G ++L ++ L++ S N
Sbjct: 70 KIITAIVAIEE-----GNLEEKVAVSENVMDVIGTRVYLLPGEEVSLLKLVQGLMINSGN 124
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTS-KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
D +AIAE + +E+ F + MN + +G+ +HF N HG+ HYTTA+D+A+++
Sbjct: 125 DAGLAIAEHMDGSEEAFAKRMNRFVEEEIGVKDSHFTNPHGLFDENHYTTAKDLAMITKY 184
Query: 177 IKTDFPQYMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + I N + + + G G+K GF SGF + +
Sbjct: 185 AMENEVFKEIAQTKEMEWIGEGWETTIYNHHRMLWDYDGVTGVKNGFVQRSGFTLSTAVE 244
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ D LIAV L A + +A+L GF + F ++
Sbjct: 245 RDDMELIAVTLNAPAAKVSYQDTAALFDYGFTRYEPHVI--KSDRLFSDESGRKYELEND 302
Query: 294 EEVCTTQKEIINYNTQMK---EAKDKESHFIDFEKITLLKNK 332
+ + + + K+ E + + LK+K
Sbjct: 303 IYYVMEKGKESTVEVTNEGMLQIKNTEGKVLKEVPLKELKDK 344
>gi|291087166|ref|ZP_06345583.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
gi|291075839|gb|EFE13203.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
Length = 464
Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats.
Identities = 78/264 (29%), Positives = 112/264 (42%), Gaps = 24/264 (9%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ K L D V+ E D PAS+TKLMTA +V L+
Sbjct: 72 AGQTAVPQIKSDAAVLYDATHDRVLYEKNADAQHYPASITKLMTALLVLEHC-----SLS 126
Query: 78 TPITISK---NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+T S+ E K G T++ L L++KSAN+IA +AE + + F
Sbjct: 127 DTVTFSQSAVTNLESGAVTLGVKAGDQFTVEQCLYGLLLKSANEIANGLAEHVSGSVSSF 186
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM-------------AILSWRIKTDF 181
MN + +LG + THF+N +G+ HYTTARDM ++ + DF
Sbjct: 187 ADLMNQKAASLGCTGTHFVNPNGLNDPNHYTTARDMALIAEAAFENPTLCRIASTVNYDF 246
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P ++ L + K N N + G G KTG+T +G +V + LIA
Sbjct: 247 PATASVPSVRKLTMG-HKMVNPNNKEYYYEGIVGGKTGYTSLAGNTLVTCVERNGTRLIA 305
Query: 242 VILGALDRNTRNKVSASLLSMGFY 265
VIL R T + +LL GF
Sbjct: 306 VIL--KSRQTHYADTKALLDYGFS 327
>gi|71910630|ref|YP_282180.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS5005]
gi|71853412|gb|AAZ51435.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS5005]
Length = 442
Score = 158 bits (400), Expect = 8e-37, Method: Composition-based stats.
Identities = 75/362 (20%), Positives = 149/362 (41%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++++++ M + + F L+ + +++ ++G V+ E P ASLTK
Sbjct: 33 IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 92
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKS 115
L+TAY+V +K + L+ + +S A E + T ++ + L +V S
Sbjct: 93 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTYSVQDLLTATLVAS 152
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M + G+++ +NA G+
Sbjct: 153 SNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEE 212
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+AI++ + DFP+ + + ++ G + N + G DG+K
Sbjct: 213 ENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLK 272
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ LI VIL A NTR + + LL RK +
Sbjct: 273 TGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKIL 332
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +++E+V ++ + + S K
Sbjct: 333 KKGSLVSERSLPIQDGQVKELPISVAEDVTIILQQGEQVPKPKQFMISETSLLAPITKGE 392
Query: 328 LL 329
++
Sbjct: 393 VV 394
>gi|302672276|ref|YP_003832236.1| D-alanyl-D-alanine carboxypeptidase DacA3 [Butyrivibrio
proteoclasticus B316]
gi|302396749|gb|ADL35654.1| D-alanyl-D-alanine carboxypeptidase DacA3 [Butyrivibrio
proteoclasticus B316]
Length = 488
Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats.
Identities = 67/277 (24%), Positives = 109/277 (39%), Gaps = 18/277 (6%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN ++D +TG ++ PAS TK+MT +
Sbjct: 61 SNETSGWPEGPQIGAEAAIVMDASTGTILYAKNIHEELYPASTTKIMTCLLAVENA---- 116
Query: 74 AMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L+ IT S A S+ G ++TL+ AL ++V SAN++A A+AE + +
Sbjct: 117 -SLSDKITFSNEAVFSVPRDGSSIGMDVGESITLEQALFGIMVGSANEVANAVAEHVSGS 175
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD---------F 181
FV MN + LG + THF N +G+ HYT+A D+A+++ +
Sbjct: 176 IDAFVNLMNQRASELGCTNTHFNNTNGLQDDDHYTSAYDLALIARAFFNNELLCKVGNTP 235
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + + F G G KTG+T + +V A + LI
Sbjct: 236 RYHFTETSTQPDDFYLNNKHKLITGEVKFDGIIGGKTGYTDQARETLVTCAERDGVKLIC 295
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
VIL + + +L + GF N T + +
Sbjct: 296 VILKEESPSQ-FTDTVTLFNYGFNNFTSVNVADTDTR 331
>gi|323126583|gb|ADX23880.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 412
Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats.
Identities = 76/366 (20%), Positives = 145/366 (39%), Gaps = 31/366 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ V++ + + P S + ++ ++G ++ E D AS+TKL+
Sbjct: 2 IKRLFVVLLITLAFGATPVNSDDFSVAAKQAIAVEVDSGKILYEKEADKAVPVASITKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + K + +TIS ++ T+ LK LIV +AN
Sbjct: 62 TTYLVYKEIANGKLEWGSSVTISNYPYELTTNYSISNVPLDARKYTVKELLKALIVTNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--------------GH 163
A+A+AE + TE KFV M+ K G+S +NA G+ H +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMSQQLKEWGISDAKLVNATGLPNHFLGENKYPKTEDEDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW----AVGTFLGADGMKTG 219
+ARD+AI++ + T+FP+ + G+ + N+ G DG+ G
Sbjct: 182 LFSARDLAIIARHLLTEFPEVLKITSKPSANFAGQTIYSYNYMLKDMPYYRDGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKINY 275
++ G + VA++++ +I V+L A D + LL N + +N
Sbjct: 242 YSEKGGASFVATSVENRMRVITVVLNADQAQEDEFAVFSATNQLLQYLLTNFQKVQVLNK 301
Query: 276 IIKDFYQQ-----NLSNEVPNISEE-VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + VP ++E+ + + + KD +K +L
Sbjct: 302 SKSGQVKAFPILDSPNKSVPLVAEKNLSLIKPANSKIKKALHITKDSSIISAPVKKGQVL 361
Query: 330 KNKITK 335
+
Sbjct: 362 AKATLQ 367
>gi|251781775|ref|YP_002996077.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242390404|dbj|BAH80863.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
Length = 412
Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats.
Identities = 76/366 (20%), Positives = 145/366 (39%), Gaps = 31/366 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ V++ + + P S + ++ ++G ++ E D AS+TKL+
Sbjct: 2 IKRLFVVLLITLAFGATPVNSDDFSVAAKQAIAVEVDSGKILYEKEADKAVPVASITKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + K + +TIS ++ T+ LK LIV +AN
Sbjct: 62 TTYLVYKEIANGKLEWGSSVTISNYPYELTTNYSISNVPLDARKYTVKELLKALIVTNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--------------GH 163
A+A+AE + TE KFV M+ K G+S +NA G+ H +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMSQQLKEWGISDAKLVNATGLPNHFLGENKYPKTEDDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW----AVGTFLGADGMKTG 219
+ARD+AI++ + T+FP+ + G+ + N+ G DG+ G
Sbjct: 182 LFSARDLAIIARHLLTEFPEVLKITSKPSANFAGQTIYSYNYMLKDMPYYRDGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKINY 275
++ G + VA++++ +I V+L A D + LL N + +N
Sbjct: 242 YSEKGGASFVATSVENRMRVITVVLNADQAQEDEFAVFSATNQLLQYLLTNFQKVQVLNK 301
Query: 276 IIKDFYQQ-----NLSNEVPNISEE-VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + VP ++E+ + + + KD +K +L
Sbjct: 302 SKSGQVKAFPILDSPNKSVPLVAEKNLSLIKPANSKIKKALHITKDSSIISAPVKKGQVL 361
Query: 330 KNKITK 335
+
Sbjct: 362 AKATLQ 367
>gi|90420271|ref|ZP_01228179.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
SI85-9A1]
gi|90335605|gb|EAS49355.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
SI85-9A1]
Length = 455
Score = 158 bits (399), Expect = 9e-37, Method: Composition-based stats.
Identities = 99/278 (35%), Positives = 160/278 (57%), Gaps = 3/278 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D TG V+++ + PAS TKLMTAY+ L+E + L +P+ +++ ++
Sbjct: 27 ASIVVDVATGKVLSQQHATERRYPASTTKLMTAYLALRALRESRLSLDSPVIVTRRSAAE 86
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
PS FK GS + LD AL++++VKSANDIA AI E++ + ++FV MN+ + LG+
Sbjct: 87 APSKMGFKPGSVIRLDFALRMMLVKSANDIAYAIGETVGGSMEEFVAMMNDAAAQLGMQD 146
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T F+NA+G+ G +++A+D+AIL I+ +FP + YF + + N N +G
Sbjct: 147 TRFINANGLPGEGQHSSAKDLAILGVAIRREFPAFADYFGTEAISNGTAILKNGNKLLGR 206
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
F GADGMKTG+ CASGFN+V+SA + ++L+AV++GA R ++SA +L GF
Sbjct: 207 FDGADGMKTGYICASGFNLVSSATRNGRTLVAVVIGANGTIPRERLSAEILEAGFA---T 263
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
I D E ++S+ +C+ + N
Sbjct: 264 DPASVDIRVDELPVASDTEPLDVSDYICSAEGRTARAN 301
>gi|239833080|ref|ZP_04681409.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
LMG 3301]
gi|239825347|gb|EEQ96915.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum intermedium
LMG 3301]
Length = 389
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 110/289 (38%), Positives = 176/289 (60%), Gaps = 3/289 (1%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+D TG V A+ W PASLTK+MTAYV F L+ + L +P+ ++ NA++ PP
Sbjct: 47 IAVDVATGKVYAQQDAFQRWYPASLTKMMTAYVAFRALQSGQMTLESPVRMTVNAAKEPP 106
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S +K GS MTLD+ALK+++VKSAND+AVA+AE++ TE FVQ MN ++ +G+ +H
Sbjct: 107 SKMGYKPGSVMTLDSALKIMLVKSANDVAVAVAEAVGGTESAFVQRMNAEAQRIGMVGSH 166
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGT 209
F N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ K N N +G
Sbjct: 167 FANPNGLHDPQNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVQANYNILLGR 226
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ GADGMKTGF CASGFN+ +SA + ++++A++LGA + R +A L++ F
Sbjct: 227 YDGADGMKTGFVCASGFNLASSATRNGRTVLAIVLGADRQEARAVQAAQLMTDAFRASAG 286
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
++ NL N+ ++ + +C+ + ++ + E K K +
Sbjct: 287 GGATLATLRPTGGGNL-NQATDMRKAICSQEAMADRWDGRDVEGKLKIN 334
>gi|218463771|ref|ZP_03503862.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Kim 5]
Length = 385
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 70/316 (22%), Positives = 132/316 (41%), Gaps = 11/316 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
K +++ +TG V+ D ++PASL KLMT +VF + + + L T +S+
Sbjct: 19 TKAAQAYMIEASTGTVLLAKNEDQGFSPASLAKLMTMNLVFDAVTKGQITLDTEYPVSEY 78
Query: 86 ASEYPPS-----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
A + S + +++ +K + ++ AND + +AE + +E++F + M
Sbjct: 79 AWRTGGAPSRTATMFAALKSRVRVEDLIKGVAIQGANDSCIILAEGMAGSEQQFAESMTR 138
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
++ +G+ F N+ G+ TAR+M L+ ++ +P YF + E
Sbjct: 139 RAREIGMDKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFALPDFEWNKIFQ 198
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N +G LGADG+ TGFT G++IVAS + + L + G R + + +L
Sbjct: 199 RNRNPLLGLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVL 258
Query: 261 SMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISE---EVCTTQKEIINYNTQMKEAK 314
G +R+ I + V I++ V + ++
Sbjct: 259 EWGLTAFENRQIFAEHEVIGAASVYGGTARTVDLIAKAPVSVYIPVSNPDRLSARIVYRW 318
Query: 315 DKESHFIDFEKITLLK 330
+ + L+
Sbjct: 319 PLTAPVPPDYQAGTLR 334
>gi|291531257|emb|CBK96842.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
Length = 390
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 73/361 (20%), Positives = 138/361 (38%), Gaps = 37/361 (10%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAET----------------NKLPYYTLLDTNTGHVIAEN 45
R+ L + A + + AE+ L++ +TG V+
Sbjct: 3 RKILSVAAAVIFAVTATVTVYAESAKKLCYLENTDKSGIGVSAVSAILIEADTGTVLFSK 62
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
AS TK+MTA + + + A + ++ ++G +T
Sbjct: 63 NEKEHRQIASTTKIMTALLTLEAGE-----PDKEFEVDPTAIKVEGTSMGLREGDIVTRR 117
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+++ S ND A A A ++ ++ F MN ++ +G++ T+F+ G+ G Y+
Sbjct: 118 ALCYGMLLPSGNDAANAAAVNISGSKSAFAVLMNKRAEEIGMTDTNFVTPSGLDADGQYS 177
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIK-----GLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
A D+A+L+ + K G + N+N + ++ G G+KTGF
Sbjct: 178 CAYDLALLTREAMNNKDFAKICGLPKAKVSFGNPKSDRILVNSNKLLTSYDGCIGVKTGF 237
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------DRKKIN 274
T ++ +V+ A + LIAV L A + A +L GF T D ++
Sbjct: 238 TDSARRTLVSCAERDGVRLIAVTLNAPND---WSDHAKMLDYGFEKVTLCEMKYDSSALS 294
Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ ++ +S E + +C QK+ I M K + EK+ + +
Sbjct: 295 LSVVGSEKETVSVECGTVKLPLCNEQKDKITAEIYM--PKFIYAGLAAGEKVGEIHYLLN 352
Query: 335 K 335
Sbjct: 353 G 353
>gi|68171447|ref|ZP_00544835.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia chaffeensis
str. Sapulpa]
gi|88657866|ref|YP_507852.1| D-alanyl-D-alanine carboxypeptidase family protein [Ehrlichia
chaffeensis str. Arkansas]
gi|67999128|gb|EAM85790.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia chaffeensis
str. Sapulpa]
gi|88599323|gb|ABD44792.1| D-alanyl-D-alanine carboxypeptidase family protein [Ehrlichia
chaffeensis str. Arkansas]
Length = 381
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 69/339 (20%), Positives = 137/339 (40%), Gaps = 9/339 (2%)
Query: 1 MRQFLVIIAMAMLSN---IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+R ++++ +S I +++ P + D + ++ E+ D P+S+T
Sbjct: 2 LRHIILLLLYCFISIQVHISNAVALPIQTTAPQAAVFDFFSNTMLLEHNIDEQIAPSSMT 61
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
LMT YV F ++K + SK A + ++ + G + + + + +I SAN
Sbjct: 62 NLMTLYVTFYYIKAGFVKMEDKFKTSKEAWQKGGNSIFLRAGQLVAVRDLINGIITTSAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D + +AE + +++ FV MN ++ L L+ +HF N G + + RD+ L+ RI
Sbjct: 122 DACITLAEGVAGSQENFVDEMNRIAQKLNLTKSHFSNVIGAQDKNQFMSIRDLITLTVRI 181
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
DFP+Y H F K + N N DG+ + +T A G+ + +A +
Sbjct: 182 FEDFPEYYHLFSKKDFKYNNIYQENINLLS-PDNRIDGIISIYTDAGGYGSIVAAKHEGR 240
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNIS 293
+ +I G R LL F + + + + K + +
Sbjct: 241 RIFILISGLKTEKERISEIKQLLDYAFNDFSSQTIFHKGSKAKEIIVKNGDAKYVEAVFN 300
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+V + +Y+T + + +K + +
Sbjct: 301 NDVIILYPKG-SYDTVKTFFSHENAISAPVKKGQEVGHL 338
>gi|27380267|ref|NP_771796.1| D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium japonicum USDA
110]
gi|27353431|dbj|BAC50421.1| blr5156 [Bradyrhizobium japonicum USDA 110]
Length = 611
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 88/231 (38%), Positives = 138/231 (59%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D N+G V+ PD +PASLTK+MT Y++F L+ K L T + +S++A++
Sbjct: 60 ASIIVDGNSGSVLQATSPDGIRHPASLTKIMTLYLLFERLESGKMKLDTEMPVSQHAADQ 119
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
P+ + G T+ +++A+K L+ +SAND AV IAE++ E F Q M +++LG+S
Sbjct: 120 DPTKLNLRAGQTIRVEDAIKGLVTRSANDAAVVIAEAIAGDEDDFAQMMTRKARSLGMSK 179
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T + NA+G+ TTARD A L I+ FP+Y YF +G+ N N +G+
Sbjct: 180 TVYRNANGLPNDEQVTTARDQATLGRAIQERFPRYYRYFATSTFNWRGQSIRNHNHLLGS 239
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
G DG+KTG+T ASGFN+V S +G++ LI V+LG +R+ + +LL
Sbjct: 240 VEGVDGIKTGYTRASGFNLVTSMRRGNRHLIGVVLGGRSGGSRDAIMRNLL 290
>gi|159184785|ref|NP_354505.2| penicillin binding protein [Agrobacterium tumefaciens str. C58]
gi|159140073|gb|AAK87290.2| penicillin binding protein [Agrobacterium tumefaciens str. C58]
Length = 390
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 69/322 (21%), Positives = 121/322 (37%), Gaps = 8/322 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ K ++D TG V+ D + PASL KLMT VV L + + T
Sbjct: 28 SQTAPFIAKAEQAYMIDAETGTVLLSQNEDQSFPPASLAKLMTVEVVLDALSKGQVTPET 87
Query: 79 PITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+S+ A S S++ +++ L +IV++AND + +AE + ++
Sbjct: 88 AYPVSEYAWRTGGAPSRTSTMFAALKSSVGINDLLTGIIVQNANDGCIIVAEGMAGSDAA 147
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F + M + LG++ + F N+ G+ G+ TTARDM L+ + +P F
Sbjct: 148 FAKRMTARAGELGMNRSIFSNSTGLPDPGNQTTARDMVRLAQHLHDTYPDRYALFTKPDF 207
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
E N N + G DG+ GF SGF V SA + + + + G D TR
Sbjct: 208 EWNRIFQRNKNTLLMPGSGIDGLGLGFAEGSGFAAVVSAEREGRRVYLALAGIADDKTRQ 267
Query: 254 KVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+ + ++ G R + + + +E + + N +
Sbjct: 268 EEARRVVDWGLTAFEKRHLFSKDEAVGAVSVYGGDVSHIDLSPKEDVSVLVPVNNPDRIS 327
Query: 311 KEAKDKESHFIDFEKITLLKNK 332
+ +
Sbjct: 328 GRIVYRWPLNAPLDVGANAGTL 349
>gi|297582349|ref|YP_003698129.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
selenitireducens MLS10]
gi|297140806|gb|ADH97563.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
selenitireducens MLS10]
Length = 465
Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats.
Identities = 79/405 (19%), Positives = 147/405 (36%), Gaps = 71/405 (17%)
Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
++++ L + ++ + + A + L+D +G V+ E D P PAS+
Sbjct: 2 LKKWGYALAAVTVSAAVLVPTERAEASYEPTVDTVILVDAKSGRVLFERNIDQPLPPASM 61
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISK----NASEYPPSNSTFKKGSTMTLDNALKLLI 112
TK+M+ Y++ + + T + IS + SN + ++ + +
Sbjct: 62 TKMMSEYLILEAVNDGDISWDTNVPISDFLASLSHNRSLSNVPLRVDGEYNVEELYESVA 121
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS------------------------ 148
+ SAN +A+AE + +E FV MN LGL
Sbjct: 122 IYSANASTMALAELISGSEGAFVSEMNEKGVELGLGTLMREAGGEYGLEDLGEISEEGLG 181
Query: 149 ATHFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
+ F+N+ G+ +Y +AR A L++ + D+P+ + I
Sbjct: 182 SFQFVNSTGLPNRLLEGNHPEGTGAEEDNYMSARAAATLAYYLVNDYPEVLDVAGIPHKV 241
Query: 195 IKGKK-----YPNTNWA-------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ PN N + DG+KTG T A+GF + + Q L++V
Sbjct: 242 FREGTGDAIDMPNWNNMIPGTENSHLDYEYVDGLKTGHTNAAGFTFTGTGEKDGQRLVSV 301
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD------FYQQNLSNEVPNISEE- 295
++GA R + + +L GF + + + EVP S E
Sbjct: 302 VMGADSIEHRFQETQRVLEWGFNTFYEEEIYAAGYSPDGFETIAVSKGEEEEVPLESTEA 361
Query: 296 ----VCTTQKEIINYNTQMKEAKDKE--SHFIDFEKITLLKNKIT 334
+ +E+ +Y + E E + E T++ I
Sbjct: 362 IHRLIQEGDEELYSYEVVLDEDLLDEDGAMEAPVEAGTVVGQMII 406
>gi|254505026|ref|ZP_05117177.1| D-alanyl-D-alanine carboxypeptidase superfamily [Labrenzia
alexandrii DFL-11]
gi|222441097|gb|EEE47776.1| D-alanyl-D-alanine carboxypeptidase superfamily [Labrenzia
alexandrii DFL-11]
Length = 299
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 96/260 (36%), Positives = 143/260 (55%), Gaps = 3/260 (1%)
Query: 9 AMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
A A+ + P +S A +L+ TG + D P PASLTK+MT Y++
Sbjct: 38 AAAVQTASLPVVSYAPATAQERGFSALVLNAATGQELYAVNADAPRFPASLTKMMTLYML 97
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
F + + L++P+ IS NA+ PP+ K GST++++ A + L VKSAND+ VA+AE
Sbjct: 98 FESVSSGENRLSSPLNISANAASQPPAKIGLKAGSTISVEQAARALAVKSANDVGVAVAE 157
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+L +E F + M ++ LGLS T F+NA G+ TTARDMA L +K FPQY
Sbjct: 158 NLAGSEAAFAREMTQKARALGLSRTRFVNATGLPDPAQVTTARDMAKLGLALKRRFPQYA 217
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
Y++ K G+ + TN +G G DG+KTG+ SG+N+VA+A +G + LI V++G
Sbjct: 218 SYYRAKSFTYNGRTFRATNNLLGKVQGVDGLKTGYVRMSGYNLVATARRGGKQLIVVVIG 277
Query: 246 ALDRNTRNKVSASLLSMGFY 265
R+ L+ F
Sbjct: 278 GQSETARDAEVTRLIEAHFQ 297
>gi|320120306|gb|EFE28569.2| serine-type D-Ala-D-Ala carboxypeptidase [Filifactor alocis ATCC
35896]
Length = 443
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 76/361 (21%), Positives = 141/361 (39%), Gaps = 38/361 (10%)
Query: 2 RQFLVIIAMAMLSNIF------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+ L + + + + + L++ TG ++ E D P PAS
Sbjct: 9 KNLLFAVIIFFNTVFLHDIHAVATNTPSLGLNCSTAVLIEEETGKILYEKQKDVPVYPAS 68
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK+MTA + L IT+ ++ S G T T++ L+ L+VKS
Sbjct: 69 TTKIMTALLTLEH-----LDLNQKITVPEDMGPADGSAMYLLPGETFTVEELLQGLLVKS 123
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+ +A+++ + ++F MN ++ +G THF+N +G+ H T+A D+A+++
Sbjct: 124 ANDAAILLAKNISGSVEEFSNLMNQRAQEIGCQNTHFVNPNGLHDPNHTTSAYDLALIAR 183
Query: 176 RIKTDFP------QYMHYFQIKGLEIKGKKYPNTNWAVG--------------TFLGADG 215
+ + + + NTN + + DG
Sbjct: 184 EAMKNPKFRELVSTDFVQIHATEQTPEIRYFRNTNKFLWSKQTIDYKGISTPIKYDVIDG 243
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
+KTG+T +G +V+S + LIAV++ S LL GF N T +K
Sbjct: 244 IKTGYTPEAGKCLVSSGEKNGIRLIAVVMKNQGLEV-YANSRKLLDYGFQNFTKKKIFTA 302
Query: 276 IIKDFYQQNLSNEVPN----ISEEVCTTQKEIINYNTQMKE--AKDKESHFIDFEKITLL 329
+ + N + E+ + + + + ++ + E+I L
Sbjct: 303 NEVAGTTVIVDSLEKNLDFYVKEDYYSIENINSKSEIEQEVFLNENIKFPIHVDEEIGTL 362
Query: 330 K 330
K
Sbjct: 363 K 363
>gi|266621645|ref|ZP_06114580.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
gi|288866679|gb|EFC98977.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
Length = 541
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 78/297 (26%), Positives = 127/297 (42%), Gaps = 25/297 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-----TNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M FL+ + + M + L+ + + + ++D +TG V+ + + PAS
Sbjct: 20 MSAFLLCLMLLMGAFPATALAAPDWPSGVSVQAESGIVIDADTGTVLWGQNIHNQYFPAS 79
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLI 112
+TK+MTA +V L +T S NA SN+ +G +++ + L L+
Sbjct: 80 ITKIMTALIVIETC-----SLDETVTFSHNAVFNVEAGSSNAGINEGDKLSVKDCLYALL 134
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+KSAN+ A A+AE + + + F MN +K LG + THF N G+ HYT+ DMA+
Sbjct: 135 LKSANEAANALAEHVAGSTEAFADMMNAKAKELGCTDTHFANPSGLNDPEHYTSTYDMAL 194
Query: 173 LSW-------RIKTDFPQYMHYFQIKGLEIKGKKYPNTNW----AVGTFLGADGMKTGFT 221
++ + D Y YP + G G KTG+T
Sbjct: 195 IARAAFLNPTFEEIDSTAYYKLPPNSINPEGLTIYPGHKMLKKSTPYYYPGIVGGKTGYT 254
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G +V A + LIAVIL + +LL GF N + ++ K
Sbjct: 255 TLAGNTLVTCARKNGLKLIAVILKGSTP-QYWTDTKNLLDFGFENFVSVRAADHETK 310
>gi|50914161|ref|YP_060133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS10394]
gi|50903235|gb|AAT86950.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS10394]
Length = 415
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 72/362 (19%), Positives = 148/362 (40%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++++ ++ + + + + +A + +++ ++G V+ E P ASLTK
Sbjct: 6 IKRWAILFFVVLTCSGLSKIVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 65
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKS 115
L+TAY+V +K + L+ + +S A E + T ++ + L +V S
Sbjct: 66 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTYSVQDLLTATLVAS 125
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M + G+++ +NA G+
Sbjct: 126 SNSAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEE 185
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+A+++ R+ DFP+ + + + G + N + G DG+K
Sbjct: 186 ENTLSAQDVAVVTMRLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLK 245
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ +I VIL A NTR + + LL RK +
Sbjct: 246 TGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKIL 305
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +++E+V ++ + + S K
Sbjct: 306 KKGSLVSERSLPIQDGQVKELPVSVAEDVTIILQQGEQVPKPKQFMISETSLLAPITKGE 365
Query: 328 LL 329
++
Sbjct: 366 VV 367
>gi|139473812|ref|YP_001128528.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str.
Manfredo]
gi|134272059|emb|CAM30298.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
pyogenes str. Manfredo]
Length = 411
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/362 (19%), Positives = 147/362 (40%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++++ ++ + + + + +A + +++ ++G V+ E P ASLTK
Sbjct: 2 IKRWAILFFVVLTCSGLSKIVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 61
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKS 115
L+TAY+V +K + L+ + +S A E + T ++ + L +V S
Sbjct: 62 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTYSVQDLLTATLVAS 121
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M + G+++ +NA G+
Sbjct: 122 SNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALEE 181
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+A+++ + DFP+ + + + G + N + G DG+K
Sbjct: 182 ENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLK 241
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ +I VIL A NTR + + LL RK +
Sbjct: 242 TGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKIL 301
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +++E+V ++ + + S K
Sbjct: 302 KKGSLVSERSLPIQDGQVKELPVSVAEDVTIILQQGEQVPKPKQFMISETSLLAPITKGE 361
Query: 328 LL 329
++
Sbjct: 362 VV 363
>gi|218666161|ref|YP_002427291.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|218518374|gb|ACK78960.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 389
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 80/308 (25%), Positives = 130/308 (42%), Gaps = 8/308 (2%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
LLD N+G V+ + P NP+ L KLMTAYV++ K+ P+ +S A
Sbjct: 46 QGAVLLDVNSGQVLVAENAEKPLNPSGLVKLMTAYVMYQAEKQGLVPPQRPVHVSNEAWH 105
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S + +T+ L++ ND AVAIA+++ + FV MN+ + +GL
Sbjct: 106 AQGSRMFIQPHLPVTMTQLEHGLLIDGGNDAAVAIAQTVAGSVGGFVDLMNHDAAAMGLQ 165
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
THF N G+ Q G +TA D+A LS R+ +P + N N G
Sbjct: 166 HTHFTNPDGLPQPGQTSTALDIARLSKRLIQAYPHVLQVAGKVSYTYNHITQYNYNPLAG 225
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+G+ G + +N+ SA +G ++L+AV+LGA R+ +++LL G+
Sbjct: 226 Q-ENINGLGVGLAAKNSWNLDVSATRGGRTLVAVVLGAPSRSAAGSDASALLDYGWNGWQ 284
Query: 269 DRKKINYI-----IKDFYQQNLSNEVPNISEEVCTTQK--EIINYNTQMKEAKDKESHFI 321
+ I+ E V + K + + NT+ A ++
Sbjct: 285 NLPLYKAGQVVAQIRHVDWSPEVVEGVTTRAVVVSEPKQQQGVRLNTRFIPAAGLKAPIR 344
Query: 322 DFEKITLL 329
I L
Sbjct: 345 AGAPIGTL 352
>gi|198284618|ref|YP_002220939.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198249139|gb|ACH84732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 415
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 80/308 (25%), Positives = 130/308 (42%), Gaps = 8/308 (2%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
LLD N+G V+ + P NP+ L KLMTAYV++ K+ P+ +S A
Sbjct: 72 QGAVLLDVNSGQVLVAENAEKPLNPSGLVKLMTAYVMYQAEKQGLVPPQRPVHVSNEAWH 131
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S + +T+ L++ ND AVAIA+++ + FV MN+ + +GL
Sbjct: 132 AQGSRMFIQPHLPVTMTQLEHGLLIDGGNDAAVAIAQTVAGSVGGFVDLMNHDAAAMGLQ 191
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
THF N G+ Q G +TA D+A LS R+ +P + N N G
Sbjct: 192 HTHFTNPDGLPQPGQTSTALDIARLSKRLIQAYPHVLQVAGKVSYTYNHITQYNYNPLAG 251
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+G+ G + +N+ SA +G ++L+AV+LGA R+ +++LL G+
Sbjct: 252 Q-ENINGLGVGLAAKNSWNLDVSATRGGRTLVAVVLGAPSRSAAGSDASALLDYGWNGWQ 310
Query: 269 DRKKINYI-----IKDFYQQNLSNEVPNISEEVCTTQK--EIINYNTQMKEAKDKESHFI 321
+ I+ E V + K + + NT+ A ++
Sbjct: 311 NLPLYKAGQVVAQIRHVDWSPEVVEGVTTRAVVVSEPKQQQGVRLNTRFIPAAGLKAPIR 370
Query: 322 DFEKITLL 329
I L
Sbjct: 371 AGAPIGTL 378
>gi|295399022|ref|ZP_06809004.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
thermoglucosidasius C56-YS93]
gi|312110372|ref|YP_003988688.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
sp. Y4.1MC1]
gi|294978488|gb|EFG54084.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
thermoglucosidasius C56-YS93]
gi|311215473|gb|ADP74077.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
sp. Y4.1MC1]
Length = 379
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 72/324 (22%), Positives = 130/324 (40%), Gaps = 20/324 (6%)
Query: 1 MRQF----LVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ + L I+A+AML + P + A L++ ++G ++ E AS
Sbjct: 1 MKLWKLIVLFIVAVAMLFSCIPDQAKAMNEVSAQSAVLMEQHSGRILLEKDAHTKRRIAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MTA + K + +T+S A S+ K+G + L + + L+++S
Sbjct: 61 ITKIMTAILALESGK-----MDDTVTVSARAVRTEGSSIYLKEGEKIKLRDLVYGLMLRS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND AVAIAE + + + FV MN + +G+ T F N HG+ ++ + L
Sbjct: 116 GNDAAVAIAEHVGGSVEGFVVLMNQKAAEIGMRNTEFANPHGLDDAENHYSTAYDMALLM 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK------YPNTNW-AVGTFLGADGMKTGFTCASGFNI 228
+ ++ + K + + N N + G KTG+T + +
Sbjct: 176 QYAMKNKEFRKISRTKVYRAPDPEGKSERVWRNKNKLLTKLYEYCTGGKTGYTKRANRTL 235
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
V +A + LIAV L A D ++ GF + K + + + E
Sbjct: 236 VTTASKDGLDLIAVTLDAPDD---WNDHIAMYEYGFKHYVIAKVDQKRMIKKIRDSFYRE 292
Query: 289 VPNISEEVCTTQKEIINYNTQMKE 312
S + E + ++K
Sbjct: 293 NIQASRALRYPVTEEEMKDLRVKI 316
>gi|229059652|ref|ZP_04197030.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH603]
gi|228719665|gb|EEL71264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH603]
Length = 317
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 75/262 (28%), Positives = 128/262 (48%), Gaps = 12/262 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G VI +N + PAS++K+MTAY+V + K
Sbjct: 53 VVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVH 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ IS+ +++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKISEKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFV 172
Query: 136 QHMNNTSKNLGLSA-THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D++ L++ + D+P+ + ++
Sbjct: 173 QLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVSKLAYHLIKDYPEILEVTHLR 232
Query: 192 GLE--------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVTNTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRVITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
+G + R + L+S F
Sbjct: 293 MGTKSKTKRFTETNKLMSYAFQ 314
>gi|94994364|ref|YP_602462.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS10750]
gi|94547872|gb|ABF37918.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS10750]
Length = 451
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 73/362 (20%), Positives = 148/362 (40%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++++++ M + + F L+ + +++ ++G V+ E P ASLTK
Sbjct: 42 IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 101
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKS 115
L+TAY+V +K + L+ + +S A E + T ++ + L +V S
Sbjct: 102 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTYSVQDLLTATLVAS 161
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M + G+++ +NA G+
Sbjct: 162 SNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALEE 221
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+A+++ + DFP+ + + + G + N + G DG+K
Sbjct: 222 ENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLK 281
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ +I VIL A NTR + + LL RK +
Sbjct: 282 TGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKIL 341
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +++E+V ++ + + S K
Sbjct: 342 KKGSLVSERSLPIQDGQVKELPVSVAEDVTIILQQGEQVPKPKQFMISETSLLAPITKGE 401
Query: 328 LL 329
++
Sbjct: 402 VV 403
>gi|67459001|ref|YP_246625.1| penicillin-binding protein DacF precursor [Rickettsia felis
URRWXCal2]
gi|67004534|gb|AAY61460.1| Penicillin-binding protein DacF precursor [Rickettsia felis
URRWXCal2]
Length = 306
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 90/286 (31%), Positives = 137/286 (47%), Gaps = 3/286 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+ A +S + + ++D +G V+ + PASLTKLMT
Sbjct: 10 IFIATFFFAPISEAKKAVKNTSKPPVQTSLVIDAKSGKVLQAHNSQIRIYPASLTKLMTL 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ K L + +S AS+ PP K G T+T+ A+ LI+KSAND AV
Sbjct: 70 YLMFEAIEAGKLPLDKKLLVSAKASKMPPCKLGLKAGETITVREAINGLIIKSANDAAVT 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +EK F MN +K LG+ T+F NA G TTARDMA L+ +K D+P
Sbjct: 130 VAEGMKGSEKAFAHLMNVKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLAMALKRDYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+Y F +G N + GA+GMKTGF +G+N++ +A + +SLIAV
Sbjct: 190 KYYPLFAKTSFVFRGNIVNGHNRVTKNYQGAEGMKTGFHTPAGYNLITTASRNGKSLIAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ G +R++ LL + + + N S
Sbjct: 250 VTGGKSAASRDQKMMGLLD---QHFNIKPIVPKSSIKLASNNKSTT 292
>gi|209559380|ref|YP_002285852.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine-
endopeptidase) [Streptococcus pyogenes NZ131]
gi|209540581|gb|ACI61157.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine-
endopeptidase) [Streptococcus pyogenes NZ131]
Length = 437
Score = 158 bits (398), Expect = 1e-36, Method: Composition-based stats.
Identities = 73/362 (20%), Positives = 148/362 (40%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++++ ++ + + + + +A + +++ ++G V+ E P ASLTK
Sbjct: 6 IKRWAILFFVVLTCSGLSKIVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 65
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKS 115
L+TAY+V +K + L+ + +S A E + T ++ + L +V S
Sbjct: 66 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTYSVQDLLTATLVAS 125
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M + G+++ +NA G+
Sbjct: 126 SNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEE 185
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+AI++ + DFP+ + + ++ G + N + G DG+K
Sbjct: 186 ENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLK 245
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ LI VIL A NTR + + LL RK +
Sbjct: 246 TGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKIL 305
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +++E+V ++ + + S K
Sbjct: 306 KKGSLVSERSLPIQDGQVKELPISVAEDVTIILQQGEQVPKPKQFMISETSLLAPITKGE 365
Query: 328 LL 329
++
Sbjct: 366 VV 367
>gi|229829484|ref|ZP_04455553.1| hypothetical protein GCWU000342_01574 [Shuttleworthia satelles DSM
14600]
gi|229791915|gb|EEP28029.1| hypothetical protein GCWU000342_01574 [Shuttleworthia satelles DSM
14600]
Length = 508
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 64/325 (19%), Positives = 118/325 (36%), Gaps = 31/325 (9%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ L+D ++G ++ PAS TKLMTA + K
Sbjct: 41 AASAAWPQEPEVQSASAVLMDLDSGEILYGKEDQTARYPASTTKLMTALLALEHSK---- 96
Query: 75 MLTTPITISKN---ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES----L 127
L +T S + +E S+ G M+++ L +++ SAN+ A AIAE +
Sbjct: 97 -LDETVTFSSDAVFKNETNSSHIARDVGEQMSMEQTLYGVLLASANECAYAIAEHVGADM 155
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ---- 183
F+Q MN+ +K LG THF+N+ G+ HYT A D+A+++ +
Sbjct: 156 GGDYNTFIQAMNDRAKELGCVNTHFVNSSGLHDDQHYTCAYDLALIAREAYQNETLRKMV 215
Query: 184 --------YMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQ 234
+ + N + G G KTG+T + ++V +
Sbjct: 216 GTRRYEIPPTNKHAEPTPLNNTHAMLSANKTSKFLYDGCQGGKTGYTDEARHSLVTYVER 275
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV----- 289
+ L+ V + A ++ K + +L+ G N + ++ + +
Sbjct: 276 DGRKLVCVSMCAEGNDS-YKDTIALMDWGLANFHKVSLEDETLQSKVDEAIKASGRQGLS 334
Query: 290 PNISEEVCTTQKEIINYNTQMKEAK 314
+ + + E K
Sbjct: 335 WQAKGTLLLPKDAAVRDLAVKLEPK 359
>gi|71903459|ref|YP_280262.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS6180]
gi|71802554|gb|AAX71907.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS6180]
Length = 451
Score = 158 bits (398), Expect = 2e-36, Method: Composition-based stats.
Identities = 73/362 (20%), Positives = 148/362 (40%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++++++ M + + F L+ + +++ ++G V+ E P ASLTK
Sbjct: 42 IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 101
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKS 115
L+TAY+V +K + L+ + +S A E + T ++ + L +V S
Sbjct: 102 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTYSVQDLLTATLVAS 161
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M + G+++ +NA G+
Sbjct: 162 SNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALEE 221
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+A+++ + DFP+ + + + G + N + G DG+K
Sbjct: 222 ENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLK 281
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ +I VIL A NTR + + LL RK +
Sbjct: 282 TGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVDRTYCRRKIL 341
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +++E+V ++ + + S K
Sbjct: 342 KKGSLVLERSLPIQDGQVKELPVSVAEDVTIILQQGEQVPKPKQFMISETSLLAPITKGE 401
Query: 328 LL 329
++
Sbjct: 402 VV 403
>gi|94988566|ref|YP_596667.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS9429]
gi|94992388|ref|YP_600487.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS2096]
gi|94542074|gb|ABF32123.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS9429]
gi|94545896|gb|ABF35943.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS2096]
Length = 451
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 73/362 (20%), Positives = 148/362 (40%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++++++ M + + F L+ + +++ ++G V+ E P ASLTK
Sbjct: 42 IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 101
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKS 115
L+TAY+V +K + L+ + +S A E + T ++ + L +V S
Sbjct: 102 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTYSVQDLLTATLVAS 161
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M + G+++ +NA G+
Sbjct: 162 SNSAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSTLEE 221
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+A+++ + DFP+ + + + G + N + G DG+K
Sbjct: 222 ENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLK 281
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ +I VIL A NTR + + LL RK +
Sbjct: 282 TGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVARTYCCRKIL 341
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +++E+V ++ + + S K
Sbjct: 342 KKGSLVSERSLPIQDGQVKELPVSVAEDVTIILQQGEQVPKPKQFMISETSLLAPITKGE 401
Query: 328 LL 329
++
Sbjct: 402 VV 403
>gi|307703815|ref|ZP_07640756.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
oralis ATCC 35037]
gi|307622650|gb|EFO01646.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
oralis ATCC 35037]
Length = 405
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 67/358 (18%), Positives = 136/358 (37%), Gaps = 31/358 (8%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + + + + ++ TG ++ E + P AS+TKL+T Y+V+
Sbjct: 1 MTLLVFGTASTVSAQEFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKLVTVYLVYE 60
Query: 68 FLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
L++ L+TP+ IS + +++ + T++ L+ +V SAN A+A+A
Sbjct: 61 ALEQGTISLSTPVDISDYPYKLTTNSEASNVPMEARNYTVEQLLEATMVSSANSAAIALA 120
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDM 170
E + +EK FV M G+ +N G+ + +A D+
Sbjct: 121 EKIAGSEKDFVDKMRAKLLEWGIQDATIVNTTGLNNETLGDNIYPGSKKDDENKLSAYDV 180
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGF 226
AI++ + D+PQ + + G + +TN+ + G DG+KTG T +G
Sbjct: 181 AIVARNLIRDYPQVLEITKKPTSTFAGLEIHSTNYMLEGMPAYRGGIDGLKTGTTDKAGA 240
Query: 227 NIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYI------ 276
+ V + ++ +I V+L A + R +++LL N + +
Sbjct: 241 SFVGTTVEKGMRIITVVLNADQQDTNPYARFTATSALLDYISANFALKTVVQKGEAYNDS 300
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
N ++ Q+ ++ S E+ ++
Sbjct: 301 KVTVLDGKEDNVTAVAKSDISIVQRIGSGTTPALQFTPKSTSEMAPLEEGKVVGTLTY 358
>gi|163868321|ref|YP_001609530.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
gi|161017977|emb|CAK01535.1| penicillin-binding protein [Bartonella tribocorum CIP 105476]
Length = 387
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 81/345 (23%), Positives = 147/345 (42%), Gaps = 12/345 (3%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ L+ + + N + + LLD NT ++ E + PASL KLMTA
Sbjct: 6 RILLSLWGILAFNTW-GRAQDFQISASQVLLLDDNTETILYEKQECTSFFPASLVKLMTA 64
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAN 117
VVF LKE T +S+NA + K + + + + L+ LI+ + N
Sbjct: 65 EVVFHQLKEGLLKNTQKFKVSENAWRKGGAPSGTTTMFAKIKTEINISDLLRGLIIVNGN 124
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D A+ +AE + E F Q MN +K +GLS +HF+NA G+ + G + TARDM IL+ I
Sbjct: 125 DAAIILAEGISGDEDHFAQLMNQRAKIIGLSQSHFVNATGLPEEGQFVTARDMIILARHI 184
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
++P Y ++ N N + +G +G +G++ GF++VA+ + +
Sbjct: 185 VQEYPDYYALYREPHFTWNNIFQRNKNPLIFKEIGVEGFGSGYSEKEGFSMVATIYKNHR 244
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNEVPNIS 293
L I G D +L G + + Y + +
Sbjct: 245 RLFLAINGLQDGKKHTTEIERILQWGITAFDLKTIFTKGERVGLASVYGGKKNFVPLIVK 304
Query: 294 EEVC--TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + + ++ +N ++K ++ + + + +++ KK
Sbjct: 305 KPISFMLSNEKGVNVKAKIKYHGPLKAPIVSGQSVGVIQILEDKK 349
>gi|30261566|ref|NP_843943.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Ames]
gi|47777937|ref|YP_018113.2| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|49184396|ref|YP_027648.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Sterne]
gi|170706241|ref|ZP_02896702.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0389]
gi|229603016|ref|YP_002865975.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0248]
gi|30255420|gb|AAP25429.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
Ames]
gi|47551642|gb|AAT30588.2| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|49178323|gb|AAT53699.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Sterne]
gi|170128775|gb|EDS97641.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0389]
gi|229267424|gb|ACQ49061.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0248]
Length = 374
Score = 157 bits (397), Expect = 2e-36, Method: Composition-based stats.
Identities = 82/336 (24%), Positives = 135/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K + +S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----ERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K + + THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIRMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGN-ETFKEIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + +D K+
Sbjct: 292 KNSFSVPLTEEEKKSVVLKVELDKSAKLVDGVKVGK 327
>gi|19746044|ref|NP_607180.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus
pyogenes MGAS8232]
gi|19748212|gb|AAL97679.1| putative D,D-carboxypeptidase, penicillin-binding protein
[Streptococcus pyogenes MGAS8232]
Length = 411
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 70/362 (19%), Positives = 146/362 (40%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++++ ++ + + + L+ + +++ ++G V+ E P ASLTK
Sbjct: 2 IKRWAILFFVVLACSGLGKTVLAADFQVGAEHAIVVEVDSGRVLYEKDAKTPDAIASLTK 61
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
L+TAY+V + + L+ + +S A ++ T ++ + L+ +V S
Sbjct: 62 LVTAYLVLDKVNSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQKTYSVQDLLEATLVAS 121
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M G+++ +NA G+
Sbjct: 122 SNSAAIALAEKVAGSEPNFVAQMRAQLSRWGITSGKILNASGLPNEVLKDHRYPGSALEE 181
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+AI++ + DFP+ + + ++ G + N + G DG+K
Sbjct: 182 ENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLK 241
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ +I VIL A NTR + + LL RK +
Sbjct: 242 TGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKIL 301
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +++E+V ++ + + S K
Sbjct: 302 KKGSLVLERSLPIQDGQVKELPVSVAEDVTIILQQGEQVPKPKQFMISETSLLAPITKGE 361
Query: 328 LL 329
++
Sbjct: 362 VV 363
>gi|146296850|ref|YP_001180621.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410426|gb|ABP67430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 377
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 85/351 (24%), Positives = 136/351 (38%), Gaps = 31/351 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
+ ++ + + I + + ++ TG ++ E D A
Sbjct: 4 KIKFSVLLVIVSLRILSYSNECYAGLKCDIQVTAKSAIAIEWITGKILFEKNKDLKLPMA 63
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S TK+MTA + L I I A P S+ +KG + + L L++
Sbjct: 64 STTKIMTAILAIENCD-----LNKEIEIPAQAIGVPGSSIYLEKGERLKIIELLYGLMLA 118
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND A A+A S+C KKFV MN +K LGL T F + HG+ + HYTTA D+A L+
Sbjct: 119 SGNDAAAALAISVCGDVKKFVNLMNKKAKELGLENTMFSSPHGLEEGEHYTTAHDLARLT 178
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKK------YPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ EI+ N N + ++ GA+G+KTGFT +G +
Sbjct: 179 AY-AMKNQTFREIVSTTQKEIRWTTRPYSRVLKNKNKMLKSYQGAEGVKTGFTKRAGRCL 237
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK----INYIIKDFYQQN 284
V SA + D +I V+L A D + +L + N K I Y+ ++N
Sbjct: 238 VTSACRDDFRVICVVLNAPD---MWNDTKKILDFAYQNYKILKIARGEIGYLRVKDSKEN 294
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T+ + N + + +K T + K
Sbjct: 295 WIKLGITEQNIFVLTKDQYPGLNVVISK-----KVSAPVKKYTEVGKLEIK 340
>gi|225570667|ref|ZP_03779690.1| hypothetical protein CLOHYLEM_06767 [Clostridium hylemonae DSM
15053]
gi|225160494|gb|EEG73113.1| hypothetical protein CLOHYLEM_06767 [Clostridium hylemonae DSM
15053]
Length = 405
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/371 (19%), Positives = 137/371 (36%), Gaps = 47/371 (12%)
Query: 1 MRQ--FLVIIAMAMLSNIFPFLSIAE----------TNKLPYYTLLDTNTGHVIAENYPD 48
M++ +++ + M ++ + FP A L+D ++G V+ D
Sbjct: 1 MKKKYWILGMIMTIVFSAFPSTGTAAGDGDIPEELSQLYARSAVLMDADSGRVLFGKDED 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS TK+MT + ++E S +A+ P K + + L
Sbjct: 61 VVRPMASTTKIMTCILALENMQE-----DQVTAASDHAASQPKVRLGVKGKEEFRIKDLL 115
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HY 164
L+++S ND AV IAE + + + F MN + LG S T+F+ +G+ + H
Sbjct: 116 YSLMLESHNDSAVVIAEGIAGSVEAFAGMMNEKAAELGCSDTYFVTPNGLDGYDEGGTHS 175
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLE---------IKGKKYPNTNWAVGTFLGADG 215
TTARD+A + D P+ + ++ + + N N + GA
Sbjct: 176 TTARDLAAIMKYCIKDSPKKEQFLEVTRTKDYSFTNVKGDRSFSCSNHNAFLTMMDGALS 235
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRKK 272
KTGFT +G+ V + + ++ I +L N + K + L+ G N +
Sbjct: 236 GKTGFTADAGYCYVGALERDGRTFIVALLACGWPNNKGYKWKDTRKLMEYGVANYEYQTV 295
Query: 273 --------------INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
I + + ++ + +E +E + K +
Sbjct: 296 WQDMKLKDVNAERGIEKGNEFGGDAKIPVKIADADKEFKVLLREGEKVDITCDVKKKLAA 355
Query: 319 HFIDFEKITLL 329
+ K+ +
Sbjct: 356 PVEEGTKVGTV 366
>gi|163939795|ref|YP_001644679.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
gi|229132823|ref|ZP_04261668.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
BDRD-ST196]
gi|163861992|gb|ABY43051.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
gi|228650650|gb|EEL06640.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
BDRD-ST196]
Length = 317
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 12/262 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G VI +N + PAS++K+MTAY+V + K
Sbjct: 53 VVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVH 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ IS +++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFV 172
Query: 136 QHMNNTSKNLGLSA-THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D++ L++ + D+P+ + ++
Sbjct: 173 QLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVSKLAYHLIKDYPEILEVTHLR 232
Query: 192 GLE--------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVTNTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRVITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
+G + R + L+S F
Sbjct: 293 MGTKSKTKRFTETNKLMSYAFQ 314
>gi|142817|gb|AAA22375.1| penicillin binding protein 5 [Bacillus subtilis]
Length = 396
Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats.
Identities = 69/338 (20%), Positives = 130/338 (38%), Gaps = 38/338 (11%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPP 91
++G ++ D AS+TK+MT Y++ + + K + + + +
Sbjct: 1 ASSGKILYSKNADKRLPIASMTKMMTEYLLLEAIDQGKVKWDQTYTPDDYVYEISQDNSL 60
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
SN +K T+ + + SAN A+AIAE + +E KFV+ MN +K LGL+
Sbjct: 61 SNVPLRKDGKYTVKELYQATAIYSANAAAIAIAEIVAGSETKFVEKMNAKAKELGLTDYK 120
Query: 152 FMNAHGVVQHGHY--------------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
F+NA G+ + +A+DMA+L+ + TD+P+ + I + +
Sbjct: 121 FVNATGLENKDLHGHQPEGTSVNEESEVSAKDMAVLADHLITDYPEILETSSIAKTKFRQ 180
Query: 198 -----KKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
PN N+ DG+KTG T ++G +A + +I V+L A
Sbjct: 181 GTDDEMDMPNWNFMLKGLVSEYKKATVDGLKTGSTDSAGSCFTGTAERNGMRVITVVLNA 240
Query: 247 LD--RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY-------QQNLSNEVPNISEEVC 297
R + + F N + ++ + + ++
Sbjct: 241 KGNLHTGRFDETKKMFDYAFDNFSMKEIYAEGDQVKGHKTISVDKGKEKEVGIVTNKAFS 300
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
K N + K +K++ +K T + +
Sbjct: 301 LPVKNGEEKNYKAKVTLNKDNLTAPVKKGTKVGKLTAE 338
>gi|312793435|ref|YP_004026358.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180575|gb|ADQ40745.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 451
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 76/349 (21%), Positives = 140/349 (40%), Gaps = 27/349 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+++ + + L++ +TG ++ E P+ PAS TK++TA
Sbjct: 19 FVILFTYPFYTYSQQESNDKLGLSAKSAILVEAHTGQILFEKNPNLRCFPASTTKVLTAL 78
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
V S+ L+ +S A+ P S+ G T++ + L +++ SAND A
Sbjct: 79 VAISYEH----DLSKIFKVSSKATMIEPGSSSYYLNPGETISFQDLLYAMLLISANDAAN 134
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
IAE++ + +FV+ MN +K++G +HF+N +G+ HYTTA D+++++ + +
Sbjct: 135 VIAENIAGSIPEFVEKMNEYAKSIGAENSHFVNPNGLHSPQHYTTAYDLSLIARQAYQNE 194
Query: 182 P--------QYMHYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNI 228
+Y + + N N + + A G+KTG+T + +
Sbjct: 195 ILKKIFSTVEYRITTASMHKKPDWQIIYNINKLLRKNSQYYYPYATGIKTGYTAQAKRCL 254
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ASA + D LIAVIL + L GF N K +
Sbjct: 255 IASAKKNDIELIAVIL---SSEDAFSDAIKLFDYGFNNFKREKLFSENQIVGKVLIDKTN 311
Query: 289 VPNISEEVCTTQKEIINYNTQMK-----EAKDKESHFIDFEKITLLKNK 332
+ + + N + + + I K T++ N
Sbjct: 312 QKWLDGYLKAPVYVLQNVYSPAESNFTYTVDFLKDLKIPIYKDTVIGNV 360
>gi|182414513|ref|YP_001819579.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutus terrae PB90-1]
gi|177841727|gb|ACB75979.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutus terrae PB90-1]
Length = 341
Score = 157 bits (396), Expect = 3e-36, Method: Composition-based stats.
Identities = 73/277 (26%), Positives = 126/277 (45%), Gaps = 19/277 (6%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ ML+ P + + D TG+V+ E D PAS+TKLMT V+
Sbjct: 16 VMLTPMLALAAPKKAPKAEPTFKGAIVTDAATGNVLLEQNADVVTPPASMTKLMTFAVLS 75
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
LK L T + I + + + T++ + ++++SAND + A+A
Sbjct: 76 DKLKSGALTLGTVVQIEPEDARMGGTQVFLDPRESFTVEELIYAMMIQSANDASYALARV 135
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGHYTTARDMAILSWRIKTD 180
+ FV+ MN ++ LG++ T F + HG+ G TT RD + L + +
Sbjct: 136 SAGSVPAFVELMNAKARELGMTQTTFRSPHGLPPKSRRVSEGDLTTPRDFSRLCRHLLLN 195
Query: 181 FPQYMHYFQIKGLEIK-----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ Y +K ++ N N +G G DG+KTG+T +G+ + A+A++
Sbjct: 196 TDV-LKYSSVKHRVFGPQRATPQQMKNHNNLLGKVAGVDGLKTGYTEGAGYCLSATALRN 254
Query: 236 DQSLIAVILGALDRN-------TRNKVSASLLSMGFY 265
D+ +I VI+GA N +R++ + LL GF
Sbjct: 255 DRRVIVVIMGAFGPNGQKDLGRSRDRKTIELLERGFA 291
>gi|134299463|ref|YP_001112959.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
MI-1]
gi|134052163|gb|ABO50134.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfotomaculum reducens
MI-1]
Length = 388
Score = 157 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 78/335 (23%), Positives = 131/335 (39%), Gaps = 30/335 (8%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
K +L++ +G V E D PASLTK+MTA + K
Sbjct: 31 KPPKVKASAASLMEVESGKVYFEKDGDKRREPASLTKVMTAILAIEKGNLK----DVVTV 86
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ A + G + L++ LK ++ SAND VAI E + + +FV+ MN
Sbjct: 87 QQRAARVSMGQDIGLNIGDRLYLEDLLKAALMYSANDSTVAIGEHIGGSHDQFVKMMNEK 146
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR-------------------IKTDFP 182
+ LGL THF N +G HYTTA D+A L+
Sbjct: 147 AVALGLKNTHFANTNGFHHPNHYTTANDLAKLTCYALQNKTFAEFVRTKEATITWLPKET 206
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + +K + NTN + + G +G+KTG T +G ++ASA + + L+
Sbjct: 207 AVKTGKKSEAETVKQRVLRNTNRLLRSDFEGINGVKTGTTPRAGNCLIASATREGRQLVV 266
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD---FYQQNLSNEVPNISEEVCT 298
VIL + N R + LL GF + + + N++ ++ +
Sbjct: 267 VILHS---NNRWNDATRLLEYGFNEVKPVVLVEKDEVLSTMPVLEGVENKITLVTAKKLE 323
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
++ + ++ K + ++ T L I
Sbjct: 324 VYVPSVDMDKIERKIHLKPTPMAPVKQGTKLGQAI 358
>gi|312876048|ref|ZP_07736037.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Caldicellulosiruptor lactoaceticus 6A]
gi|311797246|gb|EFR13586.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Caldicellulosiruptor lactoaceticus 6A]
Length = 451
Score = 157 bits (395), Expect = 3e-36, Method: Composition-based stats.
Identities = 76/349 (21%), Positives = 140/349 (40%), Gaps = 27/349 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+++ + + L++ +TG ++ E P+ PAS TK++TA
Sbjct: 19 FVILFTYPFYTYSQQESNDKLGLSAKSAILVEAHTGQILFEKNPNLRCFPASTTKVLTAL 78
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
V S+ L+ +S A+ P S+ G T++ + L +++ SAND A
Sbjct: 79 VAISYEH----DLSKIFKVSSKATMIEPGSSSYYLNPGETISFQDLLYAMLLISANDAAN 134
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
IAE++ + +FV+ MN +K++G +HF+N +G+ HYTTA D+++++ + +
Sbjct: 135 VIAENIAGSIPEFVEKMNEYAKSIGAKNSHFVNPNGLHSPQHYTTAYDLSLIARQAYQNE 194
Query: 182 P--------QYMHYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNI 228
+Y + + N N + + A G+KTG+T + +
Sbjct: 195 ILKKIFSTVEYRITTASMHKKPDWQIIYNINKLLRKNSQYYYPYATGIKTGYTAQAKRCL 254
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ASA + D LIAVIL + L GF N K +
Sbjct: 255 IASAKKNDIELIAVIL---SSEDAFSDAIKLFDYGFNNFKREKLFSENQIVGKVLIDKTN 311
Query: 289 VPNISEEVCTTQKEIINYNTQMK-----EAKDKESHFIDFEKITLLKNK 332
+ + + N + + + I K T++ N
Sbjct: 312 QKWLDGYLKAPVYVLQNVYSPAESNFTYTVDFSKDLKIPIYKDTVIGNV 360
>gi|47569141|ref|ZP_00239829.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
G9241]
gi|47554212|gb|EAL12575.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
G9241]
Length = 374
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 82/336 (24%), Positives = 134/336 (39%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ +G V+ P AS+
Sbjct: 1 MRRICVIITLFIVYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDIVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF + +
Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTNVVGRGALAEITEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + D K+
Sbjct: 292 KNSFAVPLTEQERKDVVLKVELDKSAKLKDGVKVGK 327
>gi|94990442|ref|YP_598542.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS10270]
gi|94543950|gb|ABF33998.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS10270]
Length = 451
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 73/362 (20%), Positives = 148/362 (40%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++++++ M + + F L+ + +++ ++G V+ E P ASLTK
Sbjct: 42 IKRWVILFFMVLTCSGFGKTVLAADFQAGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 101
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKS 115
L+TAY+V +K + L+ + +S A E + T ++ + L +V S
Sbjct: 102 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTYSVQDLLTATLVAS 161
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M + G+++ +NA G+
Sbjct: 162 SNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALEE 221
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+A+++ + DFP+ + + + G + N + G DG+K
Sbjct: 222 ENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLK 281
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ +I VIL A NTR + + LL RK +
Sbjct: 282 TGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKIL 341
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +++E+V ++ + + S K
Sbjct: 342 KKGSLVSERSLPIQDGQVKELPISVAEDVTIILQQDEQVPKPKQFMISETSLLAPITKGE 401
Query: 328 LL 329
++
Sbjct: 402 VV 403
>gi|229017289|ref|ZP_04174193.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1273]
gi|229023465|ref|ZP_04179962.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1272]
gi|228737818|gb|EEL88317.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1272]
gi|228743990|gb|EEL94088.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1273]
Length = 317
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 76/271 (28%), Positives = 130/271 (47%), Gaps = 12/271 (4%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + + P I ++D + G VI +N + PAS++K+MTAY+V
Sbjct: 44 LLKTGLSEKVVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVL 103
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ K P+ IS +++ + + T+T+ + L+++SAN+ AVA+AE
Sbjct: 104 ENIHNGKVHWEDPVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEH 163
Query: 127 LCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFP 182
+ KTEK FVQ MN +K L +S F NA G+ TA D+A L++ + D+P
Sbjct: 164 VAKTEKNFVQLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYP 223
Query: 183 QYMHYFQIKGLE--------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + ++ + + N N G DG+KTGFT ++G+ +A Q
Sbjct: 224 EILEVTHLRQSQLAFNNVNVTNTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQ 283
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
GD +I V++G + R + L+S F
Sbjct: 284 GDNRIITVVMGTKSKTKRFTETNKLMSYAFQ 314
>gi|229011286|ref|ZP_04168478.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides DSM
2048]
gi|228749942|gb|EEL99775.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides DSM
2048]
Length = 317
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 12/262 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G VI +N + PAS++K+MTAY+V + K
Sbjct: 53 VVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVH 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ IS +++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFV 172
Query: 136 QHMNNTSKNLGLSA-THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNVNVTSTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
+G + R + L+S F
Sbjct: 293 MGTKSKTKRFTETNKLMSYAFQ 314
>gi|237747199|ref|ZP_04577679.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacter formigenes HOxBLS]
gi|229378550|gb|EEO28641.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacter formigenes HOxBLS]
Length = 383
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 75/335 (22%), Positives = 141/335 (42%), Gaps = 16/335 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT--KLMTAYVVFSFLKEKK 73
+ + L+D + V+A D AS T KLMTAY+VF L++ +
Sbjct: 20 AHSVSLPSPNLAARSWLLMDVVSNQVLASKNADDR--IASRTASKLMTAYLVFGALRDGR 77
Query: 74 AMLTTPITISKNASE--YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
L PI +S+ + + G T T+ L LIV+ +D A+A+A ++ E
Sbjct: 78 VSLDQPIVVSEQVARLGTGGPEMFLQNGGTATVRELLLGLIVRGGDDAALALAIAVSGDE 137
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
K FV+ MN + LG+ +T F + +G Y+T DMA+L+ + DF Y +F K
Sbjct: 138 KTFVELMNREAVRLGMKSTLFAHPYGSSGKEGYSTPSDMAVLALGVMRDFSDYSSFFSTK 197
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG----DQSLIAVILGAL 247
G + N N + DG+ + + ++ASA + ++ +++++ GA+
Sbjct: 198 EFSYNGIRMRNGNRLLWLDGAVDGLFATNSPEESYTLLASAKRDSVLGERRMLSIVTGAV 257
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE--VCTTQK 301
R + S LL+ GF N + + ++ + + + + +
Sbjct: 258 SDQARMQESLKLLNWGFQNFDMIRLFEKNQIVATPEVWKGSSGKVEVGFNNDTFISVPKG 317
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + + + + +I +LK + K
Sbjct: 318 AVSRMKSVLVRNDPLIAPIDEGSRIGILKIVVDDK 352
>gi|319939695|ref|ZP_08014054.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus anginosus
1_2_62CV]
gi|319811284|gb|EFW07590.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus anginosus
1_2_62CV]
Length = 415
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 77/366 (21%), Positives = 150/366 (40%), Gaps = 32/366 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++F++ + +L + P + + + +D TG ++ E + P AS+TKL
Sbjct: 3 MKKFIITLVTTLLIFLAPTVLADNFEVGAKHAIAVDVATGKILYEKDANQPVEIASITKL 62
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+TAY+V+ + + K L T + IS + +++ + T++ L+ ++ SA
Sbjct: 63 LTAYLVYEAIHQGKFTLQTSVDISDYPYQLTVNSDASNVPLEARKYTVEELLETSLIASA 122
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---------------H 161
N A+A+AE + +EKKFV M + G+ T +NA G+
Sbjct: 123 NSPAIALAEKVAGSEKKFVDLMKAKLQQWGIKGTTIINASGLNNSVLGEEHIYPSSGKED 182
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217
+ +A D+AI++ R+ D+P+ + Q G ++N + G DG+K
Sbjct: 183 ENKMSAHDVAIIARRLILDYPEVLEITQKATSNFAGMTLTSSNHMLENMPAFRAGVDGLK 242
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILG----ALDRNTRNKVSASLLSMGFYNKTDRKKI 273
TG + G + V + Q LI V+L D N R ++ ++ + T + +
Sbjct: 243 TGSSDKGGSSFVGTIQQRGMRLITVLLNVDHADEDENARFTATSRFMTYIYQQFTVQTLV 302
Query: 274 NYIIK-----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+EV ++ E T + + + DK + +K +
Sbjct: 303 KKGEAYNKSSARVINGQKDEVTAVASEKLTIVRRYNHKKPTVHFTTDKNGYPTPLKKGVI 362
Query: 329 LKNKIT 334
+
Sbjct: 363 VGKLTY 368
>gi|306827400|ref|ZP_07460687.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
ATCC 10782]
gi|304430547|gb|EFM33569.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
ATCC 10782]
Length = 442
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 73/362 (20%), Positives = 148/362 (40%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++++++ M + + F L+ + +++ ++G V+ E P ASLTK
Sbjct: 33 IKRWVILFFMVLTCSGFGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 92
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKS 115
L+TAY+V +K + L+ + +S A E + T ++ + L +V S
Sbjct: 93 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTYSVQDLLTATLVAS 152
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M + G+++ +NA G+
Sbjct: 153 SNSAAIALAEKVAGSELHFVNQMREQLSHWGITSGKILNASGLPNEVLKDNRYPGSALEE 212
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+A+++ + DFP+ + + + G + N + G DG+K
Sbjct: 213 ENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLK 272
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ +I VIL A NTR + + LL RK +
Sbjct: 273 TGTTDLAGHCLVVTSIENGMRVITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKIL 332
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +++E+V ++ + + S K
Sbjct: 333 KKGSLVSERSLPIQDGQVKELPVSVAEDVTIILQQGEQVPKSKQFMISETSLLAPIAKGE 392
Query: 328 LL 329
++
Sbjct: 393 VV 394
>gi|320354031|ref|YP_004195370.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfobulbus propionicus
DSM 2032]
gi|320122533|gb|ADW18079.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfobulbus propionicus
DSM 2032]
Length = 374
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 70/256 (27%), Positives = 121/256 (47%), Gaps = 8/256 (3%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+S +++ ++G V+ E+ D PAS+ KLM YV+ +++
Sbjct: 23 TPLAVISQDPYV---SALVIEADSGKVLFESNADVKVYPASVLKLMDLYVILDRIEQGAL 79
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L + ++ AS+ S +++ + L+V+SAND AVA+A + +++ F
Sbjct: 80 KLDEMVPVTVEASKTGGSQVYLDPKEQFSVEELIYALMVQSANDAAVALATHIAGSKEGF 139
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFP-QYMHYFQ 189
V MN ++ LG+ + F + HG+ TTARD+AIL + Q
Sbjct: 140 VALMNQKAQALGMKHSVFHSVHGLPPSEGQEPDVTTARDLAILCRELAKRPEALKYTGTQ 199
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+G N N + G DG KTG+ A+GF+I A+A +G +I +++G+ DR
Sbjct: 200 TRGFREDKFIMRNHNKLLTQVPGCDGFKTGYYQAAGFSIAATAKKGGVRIITLVMGSKDR 259
Query: 250 NTRNKVSASLLSMGFY 265
R+ + LL+ GF
Sbjct: 260 KVRDAKAVELLAKGFA 275
>gi|238917952|ref|YP_002931469.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC
27750]
gi|238873312|gb|ACR73022.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC
27750]
Length = 464
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 64/263 (24%), Positives = 103/263 (39%), Gaps = 19/263 (7%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A L+D +TG ++ E PAS TK++T + + +
Sbjct: 53 PDAPEVNSSSCILVDADTGSILFERNSHEKCYPASTTKILTGLLTIENC-----NMDDVV 107
Query: 81 TISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T S+ + Y +N K G T++ L L++ SAN++A A+ E + + FV
Sbjct: 108 TFSQAAATSINIYEDANLGCKVGEQFTVNQLLHGLLLYSANEMAYALGEHVAGSIDAFVD 167
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD----------FPQYMH 186
MN +K LG THF NA G+ HYTTA DMA+++ + +
Sbjct: 168 MMNAKAKELGALNTHFANASGLYNTNHYTTAYDMAMIARGCYNNASFVSIDSTADAYVIP 227
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ ++ + G KTG+T S +V A + LI V+
Sbjct: 228 ATNMSAQRTIRHRHKMLKGRSYYYEYCKGGKTGYTDESQNTLVTFAEKDGMRLICVVFKE 287
Query: 247 LDRNTRNKVSASLLSMGFYNKTD 269
+ R + +L GF N
Sbjct: 288 ATDDLRYTDTKTLFDWGFSNFQK 310
>gi|229155136|ref|ZP_04283248.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
gi|228628263|gb|EEK84978.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
Length = 378
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 83/336 (24%), Positives = 134/336 (39%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ +G V+ P AS+
Sbjct: 5 MRRICVIITLFIVYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 65 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDIVYGLMLRSG 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 179
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 180 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF + +
Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTNVVGQGALAEITEKKYANHVYT 295
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK + D K+
Sbjct: 296 KNSFAVPLTEQERKNVVLKVELDKSAKLKDGVKVGK 331
>gi|306820946|ref|ZP_07454566.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551060|gb|EFM39031.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 434
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 132/340 (38%), Gaps = 34/340 (10%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ ++++ TG ++ + PAS TK+MT + L
Sbjct: 26 AYDIKPSDIVCKSAVVIESETGKILFDKNAKQKAFPASTTKIMTGLLAIEN-----LDLE 80
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
IT+ ++ S+ G T + ++ +++ SAND V +A + + FVQ
Sbjct: 81 KSITVPEDFQLVDGSSMYLLPGETFKVRELIQAVLIHSANDACVLLAIEISGSVDSFVQL 140
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ------IK 191
MN + LG + THF+N HG+ HYTTA DMAI++ + Q
Sbjct: 141 MNQKAAELGATNTHFVNPHGLHDDNHYTTAYDMAIIAREAMKNDEFRKIVGQSSLILPET 200
Query: 192 GLEIKGKKYPNTNWAVG--------------TFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + Y NTN + + DG+KTG+T G +VAS I+ D
Sbjct: 201 PKTPEKRIYNNTNRFLWSNSEIIYKNQYIPIKYDIIDGIKTGYTLEGGNCLVASGIKNDM 260
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE--- 294
LI+V+ + + S +L GF N + + I + +N+ N + +
Sbjct: 261 RLISVVYNSNGFE-MYRDSRIILDYGFDNFSVQNIITAG-EVLGSENIKNSIQEKVDFAI 318
Query: 295 --EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+V K+ + + + + +K +
Sbjct: 319 MQDVSNLMKKGGSPEFEKTIKLN--EFKLPIKKGDKIGTL 356
>gi|51892127|ref|YP_074818.1| D-alanyl-D-alanine carboxypeptidase-like protein [Symbiobacterium
thermophilum IAM 14863]
gi|51855816|dbj|BAD39974.1| D-alanyl-D-alanine carboxypeptidase-like protein [Symbiobacterium
thermophilum IAM 14863]
Length = 565
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 73/245 (29%), Positives = 115/245 (46%), Gaps = 9/245 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
Y L+D TG V++E P AS TK+MTA + +T+S
Sbjct: 316 PDIAAQAYILVDVATGAVLSEYNARAPRAIASTTKIMTALLAVEQ-----GHPDAVVTVS 370
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
NA+ P ++ + G TL L L++ S ND AVAIAE L +E+ F + MN +
Sbjct: 371 ANAASQPGTSVYLRAGEQRTLRELLYGLMLVSGNDAAVAIAEHLAGSEEAFARRMNLRAA 430
Query: 144 NLGLSATHFMNAHGVVQHGH-YTTARDMAILSWRIKTDF---PQYMHYFQIKGLEIKGKK 199
LG T+F+ A G+ + Y+TA D+A +S + ++
Sbjct: 431 ELGAQNTYFVTASGLDDDVNPYSTAEDLARISLASLRNPLFRSYMYLPQATIPGLWGNRQ 490
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N+N V + GA G+K G+T +G+ +VASA + + ++ V+LG R+ + SL
Sbjct: 491 LTNSNLFVLRYPGATGVKNGWTEKAGYTLVASAWRDGREVMLVLLGGESRSALYAEAYSL 550
Query: 260 LSMGF 264
+ GF
Sbjct: 551 MDHGF 555
>gi|51473579|ref|YP_067336.1| D-alanyl-D-alanine carboxypeptidase. [Rickettsia typhi str.
Wilmington]
gi|51459891|gb|AAU03854.1| D-alanyl-D-alanine carboxypeptidase [Rickettsia typhi str.
Wilmington]
Length = 306
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 91/291 (31%), Positives = 141/291 (48%), Gaps = 3/291 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+VI A +S + + ++D G V+ + PASLTKLMT
Sbjct: 10 IFIVIFCFAPISEAKKIVKKTNKYPVQTSLVIDAKNGKVLQAHNAQVRIYPASLTKLMTL 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
Y++F ++ K L + +S AS+ P + G +T+ +A+ LI+KSAND+AV
Sbjct: 70 YLMFEAIESGKLSLDKKLLVSAKASKMPHCKLGLRAGDNITVRDAINGLIIKSANDVAVT 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + +EK F MN +K LG+ T F NA G+ TTARD+A L+ +K D+P
Sbjct: 130 VAEGMKGSEKSFAHLMNVKAKTLGMKHTFFKNASGLHDPLQQTTARDIAKLAIALKRDYP 189
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+Y +F +G N + GA+GMKTGF +G+N+V +A + ++SLIAV
Sbjct: 190 KYYPFFSKTSFVFRGNVINGHNSVTKHYQGAEGMKTGFHTPAGYNLVTTASRKNKSLIAV 249
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
I GA +R++ LL + + N +N
Sbjct: 250 ITGAKSAASRDQKMIRLLDH---HFGVKTINYKPSIKLASNNKANTKAKSK 297
>gi|304406992|ref|ZP_07388646.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
curdlanolyticus YK9]
gi|304343979|gb|EFM09819.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
curdlanolyticus YK9]
Length = 406
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 69/263 (26%), Positives = 115/263 (43%), Gaps = 13/263 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + ++D +G ++ D P ASLTK+MTA V L + +S
Sbjct: 47 STQAKAAAIIDVESGRLLYSKNGDEPMRIASLTKIMTAIVAIEN-----GNLADKVKVSV 101
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ S+ + G M L++ L L+++S ND A AIAE + + FV+ MN ++
Sbjct: 102 RAAGKEGSSIYLRAGEVMKLEDMLYGLMLRSGNDAATAIAEHVGGSIDGFVKMMNEKAEW 161
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP----QYMHYFQIKGLEIKG-KK 199
+GL + FMN G+ + GH +TA D+A L+ + + +
Sbjct: 162 IGLKHSRFMNPSGLDEDGHLSTANDLAKLTAYALHNPTFAAIVKTRVKKAPNPNEQWDYS 221
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
+ N N + + GADG+KTG+T A+ +V+SA + Q L AV + + S+
Sbjct: 222 WSNKNKMLAMYEGADGVKTGYTKAALRCLVSSATRNGQQLAAVTINDRND---WADHRSM 278
Query: 260 LSMGFYNKTDRKKINYIIKDFYQ 282
L GF +
Sbjct: 279 LDWGFQHYVPTVIAKQGQPISGY 301
>gi|167751641|ref|ZP_02423768.1| hypothetical protein EUBSIR_02646 [Eubacterium siraeum DSM 15702]
gi|167655449|gb|EDR99578.1| hypothetical protein EUBSIR_02646 [Eubacterium siraeum DSM 15702]
Length = 390
Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats.
Identities = 67/322 (20%), Positives = 127/322 (39%), Gaps = 21/322 (6%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +TG V+ AS TK+MTA + + +
Sbjct: 42 DVSAACAILIEADTGTVLFSKNEKEHRQIASTTKIMTALLTLEAGE-----PDKEFEVDP 96
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A + ++ ++G +T +++ S ND A A A ++ ++ F MN ++
Sbjct: 97 TAIKVEGTSMGLREGDIVTRRALCYGMLLPSGNDAANAAAVNISGSKSAFAVLMNKRAEE 156
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-GLEIKGKK---- 199
+G++ T+F+ G+ G Y+ A D+A+L+ + K + K
Sbjct: 157 IGMTDTNFVTPSGLDADGQYSCAYDLALLTREAMNNKDFAKICGLPKAKVSFGNPKSDRI 216
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N+N + ++ G G+KTGFT ++ +V+ A + LIAV L A + A +
Sbjct: 217 LVNSNKLLTSYDGCIGVKTGFTDSARRTLVSCAERDGVRLIAVTLNAPND---WSDHAKM 273
Query: 260 LSMGFYNKT------DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
L GF T D ++ + ++ + E + +C QK+ I M
Sbjct: 274 LDYGFEKVTLCEMKYDSSALSLSVVGSEKETVGVECGTVKLPLCNEQKDKITAEIYM--P 331
Query: 314 KDKESHFIDFEKITLLKNKITK 335
K + EK+ + +
Sbjct: 332 KFIYAGLAAGEKVGEIHYLLNG 353
>gi|312127658|ref|YP_003992532.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777677|gb|ADQ07163.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
hydrothermalis 108]
Length = 374
Score = 156 bits (393), Expect = 4e-36, Method: Composition-based stats.
Identities = 79/341 (23%), Positives = 134/341 (39%), Gaps = 20/341 (5%)
Query: 2 RQFLVIIAMAMLSNI-----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
R F+++ A+ + + ++ TG ++ E D AS
Sbjct: 4 RAFVLVFALIITTTFGKICYANEKKNLPQVSSKSAIAIEWVTGKILFEKNKDLKLPMAST 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA +V I I A P S+ +KG + + + L L++ S
Sbjct: 64 TKIMTAILVLENCDV-----NKEIEIPLQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSG 118
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM----AI 172
ND AVA+A + K+FV+ MN +K LGLS T F + HG+ Q HYTTA D+ A
Sbjct: 119 NDAAVALAIATAGDVKRFVKLMNKKAKELGLSNTVFSSPHGLEQGQHYTTAHDLAKLAAY 178
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKY-PNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
++ + N N + + GA+G+KTGFT +G +V S
Sbjct: 179 AMRNPIFRQIVKTTEREVPWTTRPYNRILKNKNKMLRLYPGAEGVKTGFTKKAGRCLVTS 238
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ D +I V+L A D + +L + N K + I +N ++
Sbjct: 239 VCRDDFRVICVVLNAPD---MWNDTQKILDYCYNNFKVVKLLPGEIGYAKVKNGKSDWVK 295
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + +++ ++ EK ++
Sbjct: 296 VGTTYQCYWVVESSCLPKLEV--LLQAAEAPIEKNKVVGRL 334
>gi|291458267|ref|ZP_06597657.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291418800|gb|EFE92519.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 528
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 66/327 (20%), Positives = 121/327 (37%), Gaps = 20/327 (6%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ + S + L+D+++ V+ + PAS+TK++TA VV +K
Sbjct: 30 IAFAAGGSWPSPPADIQSNGAILIDSDSNAVLYAKNEHEHYFPASITKVLTAVVVLEHVK 89
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
LT + + E + G +++ + L L++ SAND A A+AE + +
Sbjct: 90 NLDEKLTFSSSATSGNLEANSTVIGAVPGDKLSVRDCLYSLLLHSANDCANALAEHVAGS 149
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY------ 184
+ F + MN + LG + +HFMN G+ HYT+ DMA + +
Sbjct: 150 NEAFAELMNQKAAELGCTDSHFMNPSGLDNPEHYTSCADMAKILQYAIKNPTFRQIDSTQ 209
Query: 185 ---------MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
K I + + G KTG+T +G +V + +
Sbjct: 210 VYTHAPISKYPDIGAKENTIYAHHHMMRRAYRDFYNGVFAGKTGYTMTAGNTLVTACKRN 269
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE--VPNIS 293
+ +LI VIL + L + N + QN +P ++
Sbjct: 270 NMTLICVILNGHHSQ--YSDTRKLFDFAYDNFSSIPISKSDSPYASLQNNLKVDGIPLVN 327
Query: 294 E-EVCTTQKEIINYNTQMKEAKDKESH 319
E+ + + I ++ + S
Sbjct: 328 ALELSIGESDHITLPKDVEFQELNSSL 354
>gi|196248748|ref|ZP_03147448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
gi|196211624|gb|EDY06383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. G11MC16]
Length = 354
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 63/300 (21%), Positives = 113/300 (37%), Gaps = 16/300 (5%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L++ ++G ++ AS+TK+MTA + K L +T+S
Sbjct: 4 VSAKSAILIEQHSGRILFAKDAHTKRRIASITKIMTAILAIESGK-----LDDTVTVSAR 58
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A S+ ++G M L + + L+++S ND AVAIAE + + + FV MN + +
Sbjct: 59 AVRTEGSSIYLRQGEKMKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNEKAAEI 118
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGK 198
G+ T F N HG+ ++ + L + ++ K +
Sbjct: 119 GMRDTEFANPHGLDDAENHYSTAYDMALLMQYAMKNKEFRRISGTKVYRAPAPPGEDGAR 178
Query: 199 KYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ N N + + + G KTG+T + +V +A + L+AV L A D
Sbjct: 179 VWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKDGIDLVAVTLDASDD---WNDHI 235
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
++ GF N K I + ++ E ++K K
Sbjct: 236 AMYEYGFSNYRIAKVSGKRIVKRISDPFYKGRLQAARDLRYPVTEKEMGELRVKVYLLKP 295
>gi|308069547|ref|YP_003871152.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine
carboxypeptidase) [Paenibacillus polymyxa E681]
gi|305858826|gb|ADM70614.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine
carboxypeptidase) [Paenibacillus polymyxa E681]
Length = 420
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 80/269 (29%), Positives = 115/269 (42%), Gaps = 13/269 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A +L+D +G +I D ASLTK+MTA V + L
Sbjct: 52 AAPPALGTHAQAASLIDVTSGRIIYSTEGDRELRIASLTKIMTAIVAIEHGR-----LQD 106
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S A S+ + G M+L+N L L+++S ND A AIAE + TE+ FV M
Sbjct: 107 RVKVSPTAYAKEGSSLFLQMGEQMSLENMLYGLMLRSGNDAASAIAEHVGGTEEGFVHLM 166
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG- 197
N+ + LGLS THF N HG+ GHY++A DMA L+ +
Sbjct: 167 NDKAVQLGLSHTHFANPHGLDAEGHYSSANDMARLTAYALHNPTFARIVKTELKKAPNPN 226
Query: 198 ----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ N N + + GADG+KTGFT + +V+SA + + L AV L D
Sbjct: 227 DSWDYSWHNKNKMLRLYEGADGVKTGFTKKAFRCLVSSATRDGRQLAAVTLNDGDD---W 283
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
A +L GF +
Sbjct: 284 NDHARMLDYGFRYYPLIPITDKQQPIDGY 312
>gi|229096060|ref|ZP_04227034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
gi|229115016|ref|ZP_04244427.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
gi|228668432|gb|EEL23863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
gi|228687352|gb|EEL41256.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
Length = 378
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 84/336 (25%), Positives = 136/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQSSGRVLYGKAEHEPQKIASI 64
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 65 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 179
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 180 YAMGN-ETFKKIFGTKTYKSNSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGALAEINEKKYANHVYT 295
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK + D K+
Sbjct: 296 KNSFSVPLTEEEKKNVVLKVELDKSAKLTDGVKVGK 331
>gi|90420704|ref|ZP_01228610.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
SI85-9A1]
gi|90334995|gb|EAS48756.1| D-alanyl-D-alanine carboxypeptidase [Aurantimonas manganoxydans
SI85-9A1]
Length = 313
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 81/248 (32%), Positives = 131/248 (52%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ +LD +G + E+ D PASLTK+MT Y++F ++ +
Sbjct: 46 VGAATATPGVAEVRGESTLVLDFASGRTLYEDAADGLRYPASLTKMMTLYLLFETIEAGR 105
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+++ + +S+NA+ PPS K G T+ + +A + + VKSAND+A IAE+L +E
Sbjct: 106 LSMSSELRVSENAASQPPSKLGLKAGETIRVADAAQAIAVKSANDVATVIAENLGGSEAD 165
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F M ++ LG+S T F+NA G+ G +TARDMA L + FP Y F G
Sbjct: 166 FANAMTAKARALGMSRTRFVNASGLPDEGQISTARDMATLGRALLNRFPAYASLFTRTGF 225
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ G+ Y TN +G+ G DG+KTG+ +GF++ A+A + + +I V++G RN
Sbjct: 226 DYNGRHYNATNKLLGSVEGVDGLKTGYIRDAGFHLAATATRRGRRIIVVVMGGRTGRERN 285
Query: 254 KVSASLLS 261
+L+
Sbjct: 286 ARVEALID 293
>gi|312793461|ref|YP_004026384.1| serine-type d-ala-d-ala carboxypeptidase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180601|gb|ADQ40771.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 387
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 79/341 (23%), Positives = 133/341 (39%), Gaps = 20/341 (5%)
Query: 2 RQFLVIIAMAMLSNI-----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
R F+++ A+ + + ++ T ++ E D AS
Sbjct: 17 RAFVLVFALIITTTFGKICYANEKKNLPQISSKSAIAIEWVTRKILFEKNKDLKLPMAST 76
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA +V I I A P S+ +KG + + + L L++ S
Sbjct: 77 TKIMTAILVLENCDV-----NKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSG 131
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM----AI 172
ND AVA+A + K+FV MN +K LGLS T F + HG+ Q HYTTA D+ A
Sbjct: 132 NDAAVALAIATAGDVKRFVNLMNKKAKELGLSNTVFSSPHGLEQGEHYTTAHDLAKLAAY 191
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKY-PNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
++ + N N + + GA+G+KTGFT +G +V S
Sbjct: 192 AMRNPIFRQIVKTTEKEVPWTTRPYNRILKNKNKMLRLYPGAEGVKTGFTKKAGRCLVTS 251
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
A + D +I V+L A + + +L + N K + I +N ++
Sbjct: 252 ACRDDFRVICVVLNAPN---MWNDTRKILDYCYSNFKVVKLLPGEIGYVKVKNGKSDWVK 308
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +N +++ + EK ++
Sbjct: 309 VGTTYQRYWVVDLNCLPKIEV--LLQVAEAPIEKNKVVGRL 347
>gi|229166858|ref|ZP_04294605.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH621]
gi|228616486|gb|EEK73564.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH621]
Length = 317
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 76/262 (29%), Positives = 127/262 (48%), Gaps = 12/262 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G VI +N + PAS++K+MTAY+V + K
Sbjct: 53 VVPPKYIPPEIDAKAAIIIDASNGEVIYQNNENEAVAPASMSKMMTAYLVLESIHNGKVH 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ IS +++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKISAKSAQTEGAKIPMQANDTLTVKDLYHALMIESANNSAVALAEHVAKTEKNFV 172
Query: 136 QHMNNTSKNLGLSA-THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMNEKAKQLEMSDKAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNVNVTSTNEMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
+G + R + L+S F
Sbjct: 293 MGTKSKTKRFTETNKLMSYAFQ 314
>gi|153008237|ref|YP_001369452.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
ATCC 49188]
gi|151560125|gb|ABS13623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum anthropi
ATCC 49188]
Length = 371
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 110/289 (38%), Positives = 174/289 (60%), Gaps = 3/289 (1%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+D TG V + W PASLTK+MTAYV F L+ + L +P+ ++ NA++ PP
Sbjct: 29 IAVDVATGKVYQQQEAFQRWYPASLTKMMTAYVAFRALQSGQMTLDSPVRMTVNAAKEPP 88
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S +K GS MTLD ALK+++VKSAND+AVA+AE++ TE FVQ MN ++ +G+ +H
Sbjct: 89 SKMGYKPGSVMTLDTALKIMLVKSANDVAVAVAEAVGGTESGFVQRMNAEAQRIGMVGSH 148
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGT 209
F N +G+ +YTTARD+A+L+ +++ +FPQY HYF + ++ K N N +G
Sbjct: 149 FANPNGLHNPNNYTTARDLAVLAVQLRREFPQYAHYFATEAIDPGAGKKVQANYNILLGR 208
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ GADGMKTGF CASGFN+ +SA + ++++A++LGA + R +A L++ F
Sbjct: 209 YDGADGMKTGFVCASGFNLASSATRNGRTVLAIVLGADRQEARAVQAAQLMTDAFRANAS 268
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
++ NL+ V ++ + +C+ Q ++ + E K K +
Sbjct: 269 GGATLATLRPAAGGNLNQAV-DMRKAICSQQAMADRWDGRDVEGKLKIN 316
>gi|303239548|ref|ZP_07326074.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio
cellulolyticus CD2]
gi|302592926|gb|EFL62648.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acetivibrio
cellulolyticus CD2]
Length = 416
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 79/332 (23%), Positives = 139/332 (41%), Gaps = 8/332 (2%)
Query: 4 FLVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
FLV+I + +++ I F S A K L+++ G V+ E + +S K+MTA
Sbjct: 12 FLVLIIIVLINGISVFAVSEAPEIKGVSAILVESKRGQVLFEKESKSRLHISSANKMMTA 71
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ + + TP+TISKNA+ S + G ++ + + +I+ SAND A A
Sbjct: 72 LLALEKVGS---KIDTPVTISKNAAAAQGSILNLEVGGKYSIQDLVYTVILTSANDSATA 128
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + + FV MN+ ++ L ++ T+F N G+ YTTA D+A+L+ ++
Sbjct: 129 LAEYVGGDFQSFVNIMNDKARELKMTDTNFTNPTGLYDEAQYTTAYDLAVLTRFALSNPY 188
Query: 183 QYMHYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ L K N+N ++ G DG KTG+ + +A + + +
Sbjct: 189 FEHMFSSQAKLWTNQGKVEVITNSNNLFWSYNGIDGGKTGYNEVERQTAITTATRDNLRV 248
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
I+++L + + S LL GF N + + IS
Sbjct: 249 ISIVLDSP-EKSVYDDSTKLLDYGFNNYKTGVLVKKDQTLKSISVGDKPIDLISPIDVYY 307
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
I + + K KE + K +
Sbjct: 308 TFPIGEDYIKAIDLKLKEGIELPVLKTEVAGT 339
>gi|325290352|ref|YP_004266533.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus
glycolicus DSM 8271]
gi|324965753|gb|ADY56532.1| Serine-type D-Ala-D-Ala carboxypeptidase [Syntrophobotulus
glycolicus DSM 8271]
Length = 292
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 77/252 (30%), Positives = 116/252 (46%), Gaps = 15/252 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
L+D TG V+ E PAS TK+MTA + K +T+S
Sbjct: 49 PAITAHTAILMDAQTGEVLYERQSRKVSPPASTTKIMTAILALELSKG-----DEIVTVS 103
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ A S+ KG + + ++ +VKS ND VAIAE T FV+ MN
Sbjct: 104 EKAGAVGESSIYLNKGDKIKMSELIEGALVKSGNDACVAIAEQTAGTVDSFVELMNKKVL 163
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI------KG 197
+G THF+N +G+ HY+ A D+AI++ + Q+ + K I K
Sbjct: 164 TIGGYNTHFVNPNGLPAKNHYSCAYDLAIMARYALQN-DQFSELVKTKYASISFDEPPKI 222
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+++ NTN + ++ G+KTG T +G +VASA + ++ LI V+L A D R S
Sbjct: 223 EQFKNTNKLLWSYPFTSGVKTGTTNEAGKCLVASANKENRKLICVVLNAPD---RYGDSQ 279
Query: 258 SLLSMGFYNKTD 269
L + GF N
Sbjct: 280 KLFNWGFGNTKS 291
>gi|229074761|ref|ZP_04207780.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
gi|228708359|gb|EEL60513.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
Length = 378
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 84/336 (25%), Positives = 136/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQSSGRVLYGKAEHEPQKIASI 64
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 65 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 179
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 180 YAMGN-ETFKKIFGTKTYKSNSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGALAEINEKKYANHVYT 295
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK + D K+
Sbjct: 296 KNSFSVPLTEEEKKNVVLKVELDKSTKLTDGVKVGK 331
>gi|42780668|ref|NP_977915.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
ATCC 10987]
gi|42736588|gb|AAS40523.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
ATCC 10987]
Length = 374
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 81/336 (24%), Positives = 129/336 (38%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ + L++ +G V+ P AS+
Sbjct: 1 MRRICVIITLLIMYASVIPIPTYAKMTSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF + +
Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTNVVGQGALAEITEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK + D K+
Sbjct: 292 KNSFAVPLTEQERKNVVLKVELDKSAKLKDGVKVGK 327
>gi|225027210|ref|ZP_03716402.1| hypothetical protein EUBHAL_01466 [Eubacterium hallii DSM 3353]
gi|224955470|gb|EEG36679.1| hypothetical protein EUBHAL_01466 [Eubacterium hallii DSM 3353]
Length = 405
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 68/327 (20%), Positives = 124/327 (37%), Gaps = 16/327 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ + L+D + V+ + AS TK+MT L+
Sbjct: 49 SAPAELSSLHAKAAILMDGDNQRVLFGKEEEKELPMASTTKIMTCLYAIEH-----GNLS 103
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+T S+ A+ P + GS L + L L+++S ND+AVAIAE + + ++F +
Sbjct: 104 DKVTFSRRAASAPKVRLGARSGSQFLLSDLLYALMLESYNDVAVAIAEHIGGSVEQFCED 163
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARD-----MAILSWRIKTDFPQYMHYFQIKG 192
M +++ G T F +G+ HYTT D L + + +
Sbjct: 164 MTQEARDYGCYHTSFETPNGLDSAKHYTTCHDLALLTCLALKNENFCKIIKEQSFSIKEL 223
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ N N + ++ GA G+KTG+T +G+ V + + LI+V+LG+ R
Sbjct: 224 KNGQSYSLNNKNLFLTSYNGAIGVKTGYTNNAGYCFVGAVKKDGHYLISVVLGSGWYPNR 283
Query: 253 ---NKVSASLLSMGFYNKTDRKK--INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + L+ G N ++ I +N +S T+
Sbjct: 284 RYKWEDTKKLMDYGIKNYNKKEIPLNQGIPSKLPVKNGRKSTCTLSAPASTSLYISPTEK 343
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKIT 334
T+ S +K T + + +
Sbjct: 344 TRC-IISLSPSLTAPVQKGTAVGSVVL 369
>gi|328543015|ref|YP_004303124.1| D-alanyl-D-alanine carboxypeptidase superfamily [polymorphum gilvum
SL003B-26A1]
gi|326412761|gb|ADZ69824.1| D-alanyl-D-alanine carboxypeptidase superfamily [Polymorphum gilvum
SL003B-26A1]
Length = 314
Score = 156 bits (393), Expect = 5e-36, Method: Composition-based stats.
Identities = 87/247 (35%), Positives = 134/247 (54%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ + + ++D +G + D P PASLTK+MT Y++F ++ + L
Sbjct: 68 ALVPASAEARGHAALVIDAASGAELFAANADAPRYPASLTKMMTLYLLFEAVERGELTLD 127
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
TP+ +S A+ PP+ GST+T+ A + L V+SAND+AVAIAE L +E F
Sbjct: 128 TPLAVSARAAARPPAKIGLATGSTITVREAAQALAVRSANDVAVAIAERLAGSESAFAAQ 187
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
M +++LG+S T F+NA G+ TTARDMAIL +K FPQY YF+ G
Sbjct: 188 MTAKARSLGMSRTRFVNASGLADTRQVTTARDMAILGRALKARFPQYAAYFRATSFAYNG 247
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ + TN +G G DG+KTG+ SG+N+VA+ +G + + V++G + R+
Sbjct: 248 RTFEATNKLLGRVPGVDGLKTGYIGLSGYNLVATGSRGGRGFVVVVMGGKSESARDAEVT 307
Query: 258 SLLSMGF 264
L+ F
Sbjct: 308 RLIETYF 314
>gi|226311997|ref|YP_002771891.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC
100599]
gi|226094945|dbj|BAH43387.1| peptidase S11 family protein precursor [Brevibacillus brevis NBRC
100599]
Length = 389
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 19/332 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
FL I + + + + L+D +G ++ ASLTK MTA
Sbjct: 14 FLFIQMVLTPAAVVKAAAAPPGLSAEGAALIDVESGRILYSKNGTKKMRIASLTKTMTAI 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
V L +T+ A S+ K G +TL+ L L+++S ND AV I
Sbjct: 74 VAIE-----MGKLDAQVTVPPQAVGVEGSSIYLKNGEKLTLEELLYGLMLRSGNDAAVTI 128
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
A + + F MN + +G+ T+F N HG+ + + + P
Sbjct: 129 AMHIGGSVPGFTYLMNEKAAMIGMEYTNFTNPHGLDDSNQHYSTPEDMAKLSAYALHNPV 188
Query: 184 YMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ K +I ++ N N + + GADG+KTG+T + + +SA + +
Sbjct: 189 FRQIVSTKVKDISWEGEQWDRRLLNKNKMLHLYNGADGVKTGYTKLAKRCLASSATRNGR 248
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN-----YIIKDFYQQNLSNEVPNI 292
L + L A D SA L+ GF N ++ + + ++ V
Sbjct: 249 QLATITLNASDD---WNDSAKLMDWGFANYPLQELVKNGQEVKPDTPVTLEAGTHLVTTN 305
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
+ + EI + ++ + + ++ +
Sbjct: 306 AFQYPLQTAEIEAIHKRVVMGESTVTSKMNGQ 337
>gi|223933668|ref|ZP_03625645.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis
89/1591]
gi|330833493|ref|YP_004402318.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis ST3]
gi|223897661|gb|EEF64045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis
89/1591]
gi|329307715|gb|AEB82131.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis ST3]
Length = 413
Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats.
Identities = 66/368 (17%), Positives = 145/368 (39%), Gaps = 33/368 (8%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
MR+FL+ + +A+ P L+ + + ++ ++G ++ E + + AS++K
Sbjct: 1 MRKFLLTLTTVIALFFTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASISK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG---STMTLDNALKLLIVKS 115
++ Y+V+ L + + L T + IS + + ++ + L ++ S
Sbjct: 61 TLSIYLVYEALAKGEITLDTMVDISDYPYSLTSNTELSNVNLDARSYSVRDLLNASLITS 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------- 162
+N +A+AE + +E FV M + G++ T +N G+
Sbjct: 121 SNSAIIALAEKIAGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSSPED 180
Query: 163 -HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217
+ +A D+AI++ R+ D+PQ + + + G Y +TN + G DG+K
Sbjct: 181 VNMFSALDVAIIARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGLK 240
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI 273
TG + ++G + +A+ Q +I V+L A R + L++ + N + +
Sbjct: 241 TGTSNSAGSSFLATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSLVTLV 300
Query: 274 NYIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + ++ Q++ + D + + T
Sbjct: 301 KKGEAFEDSKIKVFNGEKETSPVVAAADLTVVQRKQTDNVPTATFTTDIKEIDAPLKAGT 360
Query: 328 LLKNKITK 335
L+ K
Sbjct: 361 LVSKLQLK 368
>gi|210615749|ref|ZP_03290730.1| hypothetical protein CLONEX_02948 [Clostridium nexile DSM 1787]
gi|210150085|gb|EEA81094.1| hypothetical protein CLONEX_02948 [Clostridium nexile DSM 1787]
Length = 413
Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats.
Identities = 76/360 (21%), Positives = 136/360 (37%), Gaps = 37/360 (10%)
Query: 2 RQFLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
R + I+ A+L I + + L+D ++G V+ E AS TK+
Sbjct: 20 RILVFILTCALLFGITSYAKEEEPKQLYAQSAVLMDADSGRVLFEKNGYEQKAMASTTKI 79
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT + K +T+S+NA+ P + G L + L L+++S ND
Sbjct: 80 MTCILALEKGK-----PDQIVTVSENAARQPRVHLGMANGEQFYLRDLLYSLMLESHNDS 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILSW 175
AVAIAE + T + F + MN ++ +G T+F+ +G+ H TTA ++A +
Sbjct: 135 AVAIAEQVGGTVEGFARMMNEKAEKIGCKDTYFITPNGLDASDENGKHSTTAEELAKIMR 194
Query: 176 RIK---TDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
++ Q + + N N +G GA KTGFT +G+
Sbjct: 195 YCIKLSPQKELFLEITQTQNHTFTDVEGKRQFSCNNHNVFLGMMDGALSGKTGFTGDAGY 254
Query: 227 NIVASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRKKINY-------- 275
V + QG+++ I +LG N + K + +L+ G
Sbjct: 255 CYVGALKQGERTFIVALLGCGWPNNKGYKWKDTKALMEYGLQKYEYENVFQKQDSSCIIV 314
Query: 276 ------IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
F ++ ++E+ KE + + K ++ E + +
Sbjct: 315 ENGIPESDDIFDVAMAETKIKTDTQELPFLLKEGETVDIKTDIKKTLKAPVQAGETVGSV 374
>gi|196230570|ref|ZP_03129432.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
Ellin428]
gi|196225500|gb|EDY20008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
Ellin428]
Length = 355
Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats.
Identities = 69/246 (28%), Positives = 109/246 (44%), Gaps = 11/246 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+LD TG V+ E D P PAS TK+MTA +V L +
Sbjct: 82 QLAAWGAIVLDELTGKVLYEKNADAPQFPASCTKIMTALLVIEE-----GDLDHEVVCDV 136
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
S+ S+ K T L L++KSAND+A A+ + + F + MN ++
Sbjct: 137 EDSKVGESSLNLKPDQHFTRRQMLYGLMLKSANDVAHALGRDNAGSIEAFAEKMNRRARE 196
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----KY 200
LG THF+N +G+ HYTT RD+A+++ + +
Sbjct: 197 LGAQNTHFVNPNGLHNPEHYTTPRDLALIARAAMHQPF-FRQVVGTRDYNWNVNGVVDPL 255
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N + F G G+KTG+T + +V+SA++G++ +I+V++ D+ S LL
Sbjct: 256 HNHNRLLERFPGCTGVKTGYTIPAQQVLVSSAMRGNREVISVVMHT-DKPGIWNDSMLLL 314
Query: 261 SMGFYN 266
S G
Sbjct: 315 SYGLDR 320
>gi|103486742|ref|YP_616303.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingopyxis alaskensis
RB2256]
gi|98976819|gb|ABF52970.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphingopyxis alaskensis
RB2256]
Length = 273
Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats.
Identities = 76/246 (30%), Positives = 118/246 (47%), Gaps = 13/246 (5%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP- 90
L D +G ++ D + PAS+ K+MTAYVV LK ++ T T+S
Sbjct: 1 MLKDMESGAILFSRGADKRFAPASMAKVMTAYVVLDLLKTRELRRDTTFTVSDAVWRKWN 60
Query: 91 ----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
S G +++D+ LK LI SAND A +AE + +E+ FV+ MN + ++G
Sbjct: 61 SSTGGSTMFLSPGEKLSVDDLLKGLITVSANDAAAVLAEGIDGSEEAFVRRMNKVAADIG 120
Query: 147 LSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYM-HYFQIKGLEIK------GK 198
++++HF +G G +A D+ L+ R+ D P YF I L+
Sbjct: 121 MASSHFGTPNGWPDGGVTKVSAADLITLADRLIRDHPDGYARYFSIPKLQHGVAPDGRPI 180
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
PN N + GADG+KTG T +G+ + SA + + LI V+ G N R + +
Sbjct: 181 VQPNRNPILDRVDGADGLKTGHTREAGYCFLGSAERDGRRLIMVVAGLPSANARREEAQR 240
Query: 259 LLSMGF 264
L+ GF
Sbjct: 241 LMDWGF 246
>gi|313890311|ref|ZP_07823943.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
pseudoporcinus SPIN 20026]
gi|313121297|gb|EFR44404.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
pseudoporcinus SPIN 20026]
Length = 404
Score = 155 bits (392), Expect = 6e-36, Method: Composition-based stats.
Identities = 76/366 (20%), Positives = 134/366 (36%), Gaps = 32/366 (8%)
Query: 1 MRQFLVIIAMAMLSNIF----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ + ++ + +L+ F A + ++ +TG ++ + D ASL
Sbjct: 1 MKKQIYLMLICILTLFPLSHPVFADQALNLRAKEAIAVEYSTGKILYQKNSDRKVPIASL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD---NALKLLIV 113
TK+MT Y+ + + + +SK A++ + + +V
Sbjct: 61 TKIMTIYLTLKEINSGRLKWDDSVEMSKYATDLANNPDISNPPLYKNSYSVKELVDSSMV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------------- 160
S+N A+A+AE + +E KFV M + K G++ +NA G+
Sbjct: 121 VSSNSSAIALAEKISGSEAKFVDKMKDQLKTWGITDYQLVNASGLNNSMLNGHIYPGSSK 180
Query: 161 -HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADG 215
+ +A+ +AI+S + DFP+ + + N+N + G DG
Sbjct: 181 TSENRLSAKSLAIVSRHLIKDFPEILTISSQNQIYWGNDILTNSNHLLPGNTMARNGVDG 240
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKT--D 269
+KTG T +G + +A+Q +I VIL A D N R + L F N
Sbjct: 241 LKTGTTTKAGQTYIGTAVQDKMRVIVVILNATDAPKDSNARFVEANKLFDYSFQNYQKIT 300
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ-MKEAKDKESHFIDFEKITL 328
K N ++ T + IN T K +KE K
Sbjct: 301 IPKGKPFSTKLSISNAKQKMITFKSNRDFTVIQPINVQTIHYKIVPNKEHTTAPITKGEQ 360
Query: 329 LKNKIT 334
L
Sbjct: 361 LGKITL 366
>gi|300117503|ref|ZP_07055293.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1]
gi|298725338|gb|EFI65990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1]
Length = 374
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 83/336 (24%), Positives = 138/336 (41%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 1 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ + LI V L A +L GF K + +
Sbjct: 235 SKDELDLIVVTLSASSD---WDDHMNLFDKGFDRFAQTKVLGQGALAEITEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + +D K+
Sbjct: 292 KNSFSVPLTEEEKKSVVLKVELDKSAKLVDGVKVGK 327
>gi|240144614|ref|ZP_04743215.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
L1-82]
gi|257203330|gb|EEV01615.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
L1-82]
Length = 468
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 73/350 (20%), Positives = 129/350 (36%), Gaps = 29/350 (8%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+M + + P +++ +TG V+ + PAS+TK+MT +
Sbjct: 27 SMCIPVYAAEYWPEGPEVVSPNVIVMEASTGTVLYDCDSLEAHYPASITKIMTTLIALEN 86
Query: 69 LKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L +T S S G MT++ L +++ SAN+ A A+AE +
Sbjct: 87 SD-----LNDIVTFSDAAIDNTEGSGIARDYGEQMTMEQCLYAVMLASANECAYAVAEHV 141
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY--- 184
T + FV MN +K LG THF N HG+ HYT DMA+++ +
Sbjct: 142 GGTIENFVAMMNEKAKELGCQNTHFANPHGLHDENHYTCCYDMALIARAAYQNETFRIIV 201
Query: 185 ---MHYFQIKGLEIKGKKYPNTNWAVGT-------FLGADGMKTGFTCASGFNIVASAIQ 234
+ + N N + + G G KTG+T A+ +V A +
Sbjct: 202 GTARYTIPPTNKHAEQTDLQNHNEMLYPFQTNKYVYDGCTGGKTGYTNAANSTLVTYAER 261
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT-------DRKKINYIIKDFYQQNLSN 287
+LI V++ N S +L F N + + K+ N +
Sbjct: 262 DGMTLICVVMNTQSPNQ-WLDSRNLFDYCFDNFQLFNIAENETNYTSAEQKNAGTLNTNE 320
Query: 288 EVPNISEE--VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+I ++ + + + T D + + + T +++ K
Sbjct: 321 PFVDIDKDAGIVLPKTAEFSDATSKIVYDDVTNDTVGTIEYTYAGHEVGK 370
>gi|312876024|ref|ZP_07736013.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
lactoaceticus 6A]
gi|311797222|gb|EFR13562.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 387
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 79/341 (23%), Positives = 132/341 (38%), Gaps = 20/341 (5%)
Query: 2 RQFLVIIAMAMLSNI-----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
R F+++ A+ + + ++ T ++ E D AS
Sbjct: 17 RAFVLVFALIITTTFGKICYANEKKNLPQISSKSAIAIEWVTRKILFEKNKDLKLPMAST 76
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA +V I I A P S+ +KG + + + L L++ S
Sbjct: 77 TKIMTAILVLENCDV-----NKEIEIPPQAVGVPGSSMYLEKGEKLKIIDLLYGLMLSSG 131
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM----AI 172
ND AVA+A + +FV MN +K LGLS T F + HG+ Q HYTTA D+ A
Sbjct: 132 NDAAVALAIATAGDVIRFVNLMNKKAKELGLSNTVFSSPHGLEQGEHYTTAHDLAKLAAY 191
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKY-PNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
++ + N N + + GA+G+KTGFT +G +V S
Sbjct: 192 AMRNPIFRQIVKTTEKEVPWTTRPYNRILKNKNKMLRLYPGAEGVKTGFTKKAGRCLVTS 251
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
A + D +I V+L A D + +L + N K + I +N ++
Sbjct: 252 ACRDDFRVICVVLNAPD---MWNDTRKILDYCYSNFKVIKLLPGEIGYVKVKNGKSDWVK 308
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +N +++ + EK ++
Sbjct: 309 VGTTYQRYWVVDLNCLPKIEV--LLQVAEAPIEKNKVVGGL 347
>gi|295706466|ref|YP_003599541.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319]
gi|294804125|gb|ADF41191.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium DSM 319]
Length = 382
Score = 155 bits (392), Expect = 7e-36, Method: Composition-based stats.
Identities = 69/342 (20%), Positives = 136/342 (39%), Gaps = 18/342 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ + + + + + +P +S A + L++ +G V+ D AS+TK+M
Sbjct: 6 KSIIYLFIVLLCLSGWPSISSAAGSVSAHSAILMEQKSGRVLYAKNADQVSRIASITKIM 65
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA + K + +T+S +A S+ +G + L + + L+++S ND A
Sbjct: 66 TAILAIESGK-----INKTVTVSHSAVGVEGSSVYLIEGEKIKLKDLVYGLMLRSGNDAA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE++ +E FV MN ++ +G++ T F N HG+ H ++ + L R +
Sbjct: 121 VAIAEAVGGSEDGFVYLMNKKAEEIGMTNTTFQNPHGLDDHENHRSTAHDMALLMRYAMN 180
Query: 181 FPQYMHYFQIKGLEIKGKK------YPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAI 233
+ K +K + + N N + G KTG+T + +V +A
Sbjct: 181 NKIFKEISGTKVYRMKHPEEKWDRVWKNKNKLLTTLYAYCTGGKTGYTKLAKRTLVTTAT 240
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ LIAV + A D S+ F + + + + I
Sbjct: 241 KDGMDLIAVTINAPDD---WNDHISMYENAFDKYDMTSLASKGELADIKNSFYKDQLYIK 297
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
V + + ++K + +++ + N + K
Sbjct: 298 RNVVYPLTKKEQSSVEVKTTLIQ--PKKQWKETGEVPNVVGK 337
>gi|91205746|ref|YP_538101.1| penicillin-binding protein dacF precursor [Rickettsia bellii
RML369-C]
gi|157827127|ref|YP_001496191.1| penicillin-binding protein dacF precursor [Rickettsia bellii OSU
85-389]
gi|91069290|gb|ABE05012.1| Penicillin-binding protein dacF precursor [Rickettsia bellii
RML369-C]
gi|157802431|gb|ABV79154.1| Penicillin-binding protein dacF precursor [Rickettsia bellii OSU
85-389]
Length = 307
Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats.
Identities = 92/279 (32%), Positives = 137/279 (49%), Gaps = 7/279 (2%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
+ L I + + + + ++D TG V+ + PA
Sbjct: 4 KILLPYIFVIISLLTQVSEAKKAVKNSSKVPIPVQTSLVIDAKTGKVLHAHNSQIRIYPA 63
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTKLMT YV+F ++ K L + +S A++ PP + G T+T A+ +LIVK
Sbjct: 64 SLTKLMTLYVMFELIELGKLSLDKKLLVSAKAAKMPPCKIGLRAGDTITTREAINMLIVK 123
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND AV +AE++ +EK F MN +K LG+ T+F NA G TTARDMA L+
Sbjct: 124 SANDAAVTVAENIRLSEKDFAHLMNIKAKQLGMKNTYFKNASGWHDPLQQTTARDMAKLT 183
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
IK FP+Y F +G N + GA+GMKTGF +G+N+V +A +
Sbjct: 184 LAIKQKFPKYYPLFSKTSFVFRGNVINGHNKITKNYAGAEGMKTGFHTPAGYNLVTTASR 243
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
+SLIAV+ G +R++ LL F + + K+
Sbjct: 244 NGKSLIAVVTGGRSAGSRDQKMIGLLDQHFNVASAKPKV 282
>gi|150390405|ref|YP_001320454.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
metalliredigens QYMF]
gi|149950267|gb|ABR48795.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
metalliredigens QYMF]
Length = 377
Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats.
Identities = 78/327 (23%), Positives = 135/327 (41%), Gaps = 14/327 (4%)
Query: 12 MLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
++S + A L+D TG V+A AS TK++T +
Sbjct: 23 LISYGLSAKNQAPHFPSSHAAILMDVETGRVLAGQNFHEKMPMASTTKILTGLLAVEN-- 80
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L I+++ A S+ + + + + L+++S ND A AIA + +
Sbjct: 81 ---LPLDKLISVNPKAVGVEGSSIYLESNERVKSIDLIYGLMLRSGNDAAEAIAYEISGS 137
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYF 188
+ F MN +K +G + T+FMN HG+ HYTTA D+++++ + F + +
Sbjct: 138 IEDFATLMNQRAKEIGANNTNFMNPHGLHHDDHYTTAYDLSLITRAALKNVTFKEVVKTE 197
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ K + N N + ++ ADG+KTG+T SG +VASA + IAV L D
Sbjct: 198 FWQAEREGHKDFANKNKLLKSYESADGVKTGYTRRSGRCLVASATNNNMQFIAVTLNDSD 257
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ +LL GF + K + K +Q + +I+ TT +
Sbjct: 258 D---FNTTRTLLEYGFETYSPFKILEQEEKLISKQVIHGLKDSINLYPATTAIIPLRDGD 314
Query: 309 QMKEAKDK---ESHFIDFEKITLLKNK 332
+ K K E+ T++
Sbjct: 315 EEKLIKVLDVPETLQAPLITGTVVGKL 341
>gi|326791206|ref|YP_004309027.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
DSM 5427]
gi|326541970|gb|ADZ83829.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
DSM 5427]
Length = 436
Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats.
Identities = 80/365 (21%), Positives = 137/365 (37%), Gaps = 37/365 (10%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ +I+ + I A + L+D T V+ E PAS
Sbjct: 1 MKRKVYLCLSLILTLFFSCPIIQAEETAPQIEAESAILIDATTKTVLYEKNAYSKQYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLI 112
+TKLMTA + T IT SK A S+ G +T+D AL L+
Sbjct: 61 ITKLMTALLAIEN-----LQPTDTITFSKEAIFGIERGSSHIGMDVGEQITVDQALHGLL 115
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA- 171
+ SAN++A +AE++ + F M++ +K LG THF+N HG+ HYTTA DM+
Sbjct: 116 LMSANEVANGLAEAVSGSIDAFAIRMSDRAKELGALNTHFVNPHGLHDENHYTTAYDMSL 175
Query: 172 ------------ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ +I+ L K + A G KTG
Sbjct: 176 IASYLADNEYFLNIMKDYIYQINGTNKTDEIRYLSQDHKMFNPLKDASIFREDVIGGKTG 235
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYII 277
+T + +V A +G +L+AV++ + + T + +LL GF + N I
Sbjct: 236 YTDQARHTLVTIAKEGKTTLVAVVMKSE-KGTLYSDTNTLLDYGFNSYHSLALHSPNETI 294
Query: 278 KDFYQQNLSNEVP--------NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
K + + P + +++ + + E + ++ ++
Sbjct: 295 KTLPLYTIKSGQPYQAGSCSIGVEKDLSVLVRNDTTLQEITTSLELPEYIDMTAKEGDVI 354
Query: 330 KNKIT 334
Sbjct: 355 GEITY 359
>gi|327193414|gb|EGE60313.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli
CNPAF512]
Length = 360
Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats.
Identities = 68/308 (22%), Positives = 128/308 (41%), Gaps = 8/308 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+++ +TG V+ D ++PASL KLMT +VF + + + L T +S+ A +
Sbjct: 1 MIEASTGTVLLAKNEDQGFSPASLAKLMTMDLVFEAVTKGQITLDTEYPVSEYAWRTGGA 60
Query: 93 -----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
S + +++ +K + ++ AND + +AE + +E++F + M ++ +G+
Sbjct: 61 PSRTATMFAALKSRVRVEDLIKGIAIQGANDSCIILAEGMAGSEQQFAESMTRRAREIGM 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
F N+ G+ TAR+M L+ ++ +P YF E N N +
Sbjct: 121 DKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFAQPDFEWNRIFQRNRNPLL 180
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
G LGADG+ TGFT G++IVAS + + L + G R + + +L G
Sbjct: 181 GLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGLTAF 240
Query: 268 TDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
+R+ I + V I++ + + N + + +
Sbjct: 241 ENRQIFAEHEVIGAASVYGGTARTVDLIAKAPVSVYIPVSNPDRLSARIVYRWPLTAPVQ 300
Query: 325 KITLLKNK 332
Sbjct: 301 PDYQAGTL 308
>gi|56420821|ref|YP_148139.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus
HTA426]
gi|56380663|dbj|BAD76571.1| D-alanyl-D-alanine carboxypeptidase [Geobacillus kaustophilus
HTA426]
Length = 382
Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats.
Identities = 65/320 (20%), Positives = 127/320 (39%), Gaps = 25/320 (7%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L++ ++G V+ AS+TK+MTA + K + +T+S
Sbjct: 32 VSAKSAILIEQHSGRVLFAKDAYTKRRIASITKIMTAILAIESGK-----MDDTVTVSAR 86
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A S+ ++G + L + + L+++S ND AVAIAE + + + FV MN + +
Sbjct: 87 AVRTEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEI 146
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGK 198
G+ T F N HG+ ++ + L + ++ K +
Sbjct: 147 GMRDTEFANPHGLDDAENHYSTAYDMALLMQYAMKNKEFRRISGTKVYRAPAPPGEDGAR 206
Query: 199 KYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ N N + + + G KTG+T + +V +A +G LIAV L A D
Sbjct: 207 VWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAPDD---WNDHI 263
Query: 258 SLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT---Q 309
++ GF + + + ++ I FY + V ++ V ++ + +
Sbjct: 264 AMYEYGFSHYHIAKVSSERVVDKISDPFY-RGRLQAVRDLRYPVTDKEESGLRVKVYLLK 322
Query: 310 MKEAKDKESHFIDFEKITLL 329
+++ +K E +
Sbjct: 323 LRKEWEKYPERAPTEVGKAV 342
>gi|21910291|ref|NP_664559.1| putative D,D-carboxypeptidase, penicillin-binding protein
[Streptococcus pyogenes MGAS315]
gi|28895868|ref|NP_802218.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus
pyogenes SSI-1]
gi|21904486|gb|AAM79362.1| putative D,D-carboxypeptidase, penicillin-binding protein
[Streptococcus pyogenes MGAS315]
gi|28811118|dbj|BAC64051.1| putative D,D-carboxypeptidase, penicillin-binding protein
[Streptococcus pyogenes SSI-1]
Length = 415
Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats.
Identities = 71/362 (19%), Positives = 147/362 (40%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++++ ++ + + + + +A + +++ ++G V+ E P ASLTK
Sbjct: 6 IKRWAILFFVVLTCSGLSKIVLAADFQAGAEHAIVVEADSGRVLYEKDAKTPDAIASLTK 65
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKS 115
L+TAY+V +K + L+ + +S A E + T ++ + L +V S
Sbjct: 66 LVTAYLVLDKVKSGQLQLSDQVNLSDYAFELTKDRSLSNVPFDKKTYSVQDLLTATLVAS 125
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M + G+++ +NA G+
Sbjct: 126 SNSAAIALAEKVAGSEPHFVNQMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEE 185
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+A+++ + DFP+ + + + G + N + G DG+K
Sbjct: 186 ENTLSAQDVAVVTMHLLEDFPEILEITKQTEVNFAGNSIKSFNQLLPGMAKGRAGVDGLK 245
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ +I VIL A NTR + + LL RK +
Sbjct: 246 TGTTDLAGHCLVVTSIENSMRVITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKIL 305
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ +++E+V ++ + + S K
Sbjct: 306 KKGSLVSERSLPIQDGQVKELPVSVAEDVTIILQQGEQVPKPKQFMISETSLLAPITKGE 365
Query: 328 LL 329
++
Sbjct: 366 VV 367
>gi|255284449|ref|ZP_05349004.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
DSM 14469]
gi|255264994|gb|EET58199.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
DSM 14469]
Length = 403
Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats.
Identities = 74/363 (20%), Positives = 132/363 (36%), Gaps = 39/363 (10%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
R+FL ++ ++ + E L+D +G ++ + AS
Sbjct: 6 RRFLACLSALLVMMSGSAAATEEVPEELKNLYAHSAVLMDGGSGRILFGKNEEEVLPMAS 65
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK+MT + ++ + S NA+ P + + G +++ L L+++S
Sbjct: 66 TTKIMTCILTLESGRQGEI-----AVASANAAAQPKVHLGVRTGEEFYVEDLLYSLMLES 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMA 171
ND AV IAE + + + F MN + LG +THF+ +G+ H TTA D+A
Sbjct: 121 HNDSAVMIAEHIGGSVEGFAAMMNEKAAQLGCVSTHFVTPNGLDATDGSGTHSTTAADLA 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLE---------IKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+ + PQ + QI + N N + G KTGFT
Sbjct: 181 EIMRYCVSISPQREAFLQITQTRSYSFSNVEQSRSFSCQNHNAFMDMMEGVISGKTGFTS 240
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTR---NKVSASLLSMGFYNKTDRKK--INYII 277
A+G+ V + + I +L + R + +A+LL G N ++
Sbjct: 241 AAGYCYVCALEDDGRLFIVALLACGWPDNRTWKWRDAAALLGYGKENYHNQTINCTEKPR 300
Query: 278 KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH----------FIDFEKIT 327
+ LS + E V + + + +D E EK
Sbjct: 301 TLTVEGGLSGDKNPWREAVVEAVPDTAAASGKQYLLRDGEQIRSRLTIRKGLQAPVEKGE 360
Query: 328 LLK 330
++
Sbjct: 361 VVG 363
>gi|167772310|ref|ZP_02444363.1| hypothetical protein ANACOL_03687 [Anaerotruncus colihominis DSM
17241]
gi|167665413|gb|EDS09543.1| hypothetical protein ANACOL_03687 [Anaerotruncus colihominis DSM
17241]
Length = 384
Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats.
Identities = 63/315 (20%), Positives = 116/315 (36%), Gaps = 21/315 (6%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
K +LD TG V+ + AS TK+M+ + + T+
Sbjct: 44 DTKAKAAVVLDAATGRVLFAKNANARLPMASTTKIMSTLLTLEQDGQ-----DEWFTVDP 98
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+A S+ + G +TL +++ S ND A A A + +++ F + MN +
Sbjct: 99 DAIRVEGSSMGLRVGDRVTLSALAYGMMLPSGNDAANAAAVRIAGSKEAFARMMNERAAE 158
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------K 198
LG+ +HF+ G+ + HY++A DMA+L+ ++ P++ K ++ +
Sbjct: 159 LGMEDSHFVTPSGLDDNAHYSSAYDMALLTREALSN-PRFAEICSQKSAKVCFGNPPADR 217
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ N N + + A G+KTGFT A+G +V+ A +G LI V L D
Sbjct: 218 WFSNHNRLLKLYPDAAGVKTGFTDAAGRCLVSYAQRGGVRLIVVTLNCPDD---WNEHIK 274
Query: 259 LLSMGF---YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
L F + I + E + +
Sbjct: 275 LYEHYFGALTQTAPGEMIPAADLPVTGGTQTYAAVTFEEPEPVALLPGERLDVTVTAE-- 332
Query: 316 KESHFIDFEKITLLK 330
+ + ++
Sbjct: 333 -PFLYAPVQAGDVVG 346
>gi|229149767|ref|ZP_04277997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
gi|228633798|gb|EEK90397.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
Length = 378
Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats.
Identities = 87/336 (25%), Positives = 135/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + M+ +++ P + A L++ +G V+ P AS+
Sbjct: 5 MRRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 65 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAES+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 120 NDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 179
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 180 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+G LI V L A +L GF K + +
Sbjct: 239 SKGGLDLIVVTLSASSD---WDDHMNLFDKGFDRFKQTKVLGQGAIAEINEKKYANHVYT 295
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK + D K+
Sbjct: 296 KNSFSVPLTEEEKKNVVLKVELDKSTKLTDGVKVGK 331
>gi|169632783|ref|YP_001706519.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
[Acinetobacter baumannii SDF]
gi|169151575|emb|CAP00352.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
[Acinetobacter baumannii]
Length = 439
Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats.
Identities = 91/343 (26%), Positives = 157/343 (45%), Gaps = 15/343 (4%)
Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS
Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ +K K L IT + + ++ S K G +++D L LIV
Sbjct: 61 LTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L
Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A
Sbjct: 181 SQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTQAAGYNLALTAS 240
Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ + L+ ++LG R +++ L+++ + D I +
Sbjct: 241 RPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVIPEQKLIAELPVIK 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + E + + D + ++I +L
Sbjct: 301 STLKMFKVETKQPTIVTTSLYAEP-TPIDLNTFDYATQRIQVL 342
>gi|218232835|ref|YP_002366250.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
B4264]
gi|296502139|ref|YP_003663839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
gi|218160792|gb|ACK60784.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264]
gi|296323191|gb|ADH06119.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
Length = 374
Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats.
Identities = 87/336 (25%), Positives = 135/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + M+ +++ P + A L++ +G V+ P AS+
Sbjct: 1 MRRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAES+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+G LI V L A +L GF K + +
Sbjct: 235 SKGGLDLIVVTLSASSD---WDDHMNLFDKGFDRFKQTKVLGQGAIAEINEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK + D K+
Sbjct: 292 KNSFSVPLTEEEKKNVVLKVELDKSTKLTDGVKVGK 327
>gi|291520325|emb|CBK75546.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens
16/4]
Length = 463
Score = 155 bits (391), Expect = 9e-36, Method: Composition-based stats.
Identities = 70/351 (19%), Positives = 130/351 (37%), Gaps = 35/351 (9%)
Query: 1 MRQFLVIIAMAMLSN------------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD 48
+++F+ + +L + +++ TG ++ D
Sbjct: 3 LKRFISKLLAFVLLINGLFLFNYRDVKAADYWPSGVDVTAESAIIMEQETGTILYSKNID 62
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLD 105
PAS+TK+MTA +V K L + S A S+ MT++
Sbjct: 63 EVHYPASITKIMTALIVLEKCK-----LDETVKFSAEAVYGTELGSSSIARDVNEEMTVE 117
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
L ++++SAN+ A A+ E + FV+ MN +K LG + THF N +G+ HYT
Sbjct: 118 QTLYGMMLESANECAYALGEHVAGDIPSFVKMMNEKAKELGCTNTHFNNTNGLPDEEHYT 177
Query: 166 TARDMAILSWRIK-------------TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
TA DMA++S P + L + +
Sbjct: 178 TAHDMALISRAAFAIPKFAEIVGTKNYTIPPTNKHADPTPLNNHHQMLHYYKSNKYIYDY 237
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
G KTG+T +G +V A + +LI V++ + S +L F N +
Sbjct: 238 CLGGKTGYTAVAGATLVTYAKKDGMTLICVVMK-DTVGEQYPDSTNLFEYCFDNFSTYSV 296
Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323
++ N++ + + + ++ K+ + + D S + +
Sbjct: 297 ADFASISEEDTNITG-ILSENSDLIKIDKKGMIVIPKTASVLDVVSEVVPY 346
>gi|307825263|ref|ZP_07655483.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacter
tundripaludum SV96]
gi|307733719|gb|EFO04576.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylobacter
tundripaludum SV96]
Length = 395
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 93/263 (35%), Positives = 148/263 (56%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + +L+ ++ F + ++D + G+V+ E W PASLTKLMT Y+ F
Sbjct: 6 LTLLILNAVWLFAVSEVSYGRHAAIIIDADNGNVLHEVEATQSWYPASLTKLMTLYMTFD 65
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
LK + L +T S AS+ P S ++G +T+++A+ +I +SAND +V +AE L
Sbjct: 66 ALKAGQIHLHDTLTASTRASQQPNSKLGLRRGEHLTVEDAILAIITRSANDASVVLAEHL 125
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
TE+ F +M + +LG+ THFMNA G+ + TT RDMA+L+W+ + +FP+Y HY
Sbjct: 126 GDTEENFAVNMTEKADSLGMYNTHFMNATGLPNNWQVTTPRDMAVLAWKAQRNFPEYYHY 185
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
F KG + N ++ GA+GMKTGFTC SGFN++ +A Q + LI V++G +
Sbjct: 186 FSAHSFNYKGTELRGINKFTASYPGAEGMKTGFTCGSGFNLIGAAHQNGKHLIGVVMGGM 245
Query: 248 DRNTRNKVSASLLSMGFYNKTDR 270
R ++ + F N T+
Sbjct: 246 TSKERYQLMMQKMDASFANLTNV 268
>gi|148984605|ref|ZP_01817873.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP3-BS71]
gi|147922996|gb|EDK74111.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae
SP3-BS71]
Length = 406
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 144/360 (40%), Gaps = 31/360 (8%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ +++L ++ T + ++ NTG ++ E P AS+TKL+T Y+V+
Sbjct: 1 MLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVY 60
Query: 67 SFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
L+ L+TP+ IS + +++ + T++ L+ +V SAN A+A+
Sbjct: 61 EALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSANSAAIAL 120
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARD 169
AE + +EK FV M G+ +N G+ + +A D
Sbjct: 121 AEKIAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYD 180
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASG 225
+AI++ + +PQ + + G +TN+ + G DG+KTG T +G
Sbjct: 181 VAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAG 240
Query: 226 FNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYII---- 277
+ V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 241 ESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQD 300
Query: 278 --KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E++ ++ + ++ D ++ E T++ + +
Sbjct: 301 SKAPVQDGKEDTVTAVAPEDIYLIEQIGNQSSQSVQFTPDSKAIPAPLEARTVVGHLTYE 360
>gi|239827577|ref|YP_002950201.1| serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
gi|239807870|gb|ACS24935.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacillus sp. WCH70]
Length = 381
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 76/330 (23%), Positives = 129/330 (39%), Gaps = 19/330 (5%)
Query: 5 LVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L I A+ ML + P + A L++ N+G ++ E AS+TK+MT
Sbjct: 9 LFIAAVMMLFSCIPDRAKAMNGVSAQSAILMEQNSGRILFEKDAHTKRRIASITKIMTVI 68
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ K + +T+S A S+ K+G + L + + +++S ND AVAI
Sbjct: 69 LAIESGK-----MDDTVTVSARAVHTEGSSIYLKEGEKIKLRDLVYGTMLRSGNDAAVAI 123
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFP 182
AE + + + FV MN + +G+ THF N HG+ HY+TA DMA+L +
Sbjct: 124 AEHVGGSVEGFVFLMNQKAAEIGMRNTHFANPHGLDDSENHYSTAYDMALLMQYAMKNKE 183
Query: 183 -------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ G + + G KTG+T + +V +A +G
Sbjct: 184 FRKISGTEVYRAPASPGEDWDRVWRNKNKLLTSLYEYCTGGKTGYTKRAKRTLVTTASKG 243
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
LI+V L A D ++ GF + K + + + + S +
Sbjct: 244 GMDLISVTLDAPDD---WNDHIAMYEYGFGHYMIAKVNRKRMVKKIRDSFYRKNIQASRD 300
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ E +K D++K
Sbjct: 301 LRYPVTEEEIKELHVKI--YLLRPKKDWKK 328
>gi|261417877|ref|YP_003251559.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
sp. Y412MC61]
gi|261374334|gb|ACX77077.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacillus
sp. Y412MC61]
Length = 382
Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats.
Identities = 66/322 (20%), Positives = 127/322 (39%), Gaps = 23/322 (7%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L++ ++G V+ AS+TK+MTA + K + +T+S
Sbjct: 32 VSAKSAILIEQHSGRVLFAKDAYTKRRIASITKIMTAILAIESGK-----MDDTVTVSAR 86
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A S+ ++G + L + + L+++S ND AVAIAE + + + FV MN + +
Sbjct: 87 AVRTEGSSIYLRQGEKIKLRDLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNQKAAEI 146
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-------KGK 198
G+ T F N HG+ ++ + L + ++ K +
Sbjct: 147 GMRDTEFANPHGLDDAENHYSTAYDMALLMQYAMKNKEFRRISGTKVYRAPAPPGEDGAR 206
Query: 199 KYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ N N + + + G KTG+T + +V +A +G LIAV L A D
Sbjct: 207 VWRNKNKLLTSLYEYCTGGKTGYTKRAHRTLVTTASKGGIDLIAVTLDAPDD---WNDHI 263
Query: 258 SLLSMGFYNK-----TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
++ GF + + + ++ I FY + V ++ V ++ + + +
Sbjct: 264 AMYEYGFSHYHIAKVSSERVVDKISDPFY-RGRLQAVRDLRYPVTDKEESGLQVKVYLLK 322
Query: 313 AKDKESHFIDFEKITLLKNKIT 334
+ KE T + +
Sbjct: 323 PR-KEWKKYPERAPTEVGKAVL 343
>gi|254707442|ref|ZP_05169270.1| D-alanyl-D-alanine carboxypeptidase [Brucella pinnipedialis
M163/99/10]
gi|261314930|ref|ZP_05954127.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M163/99/10]
gi|261303956|gb|EEY07453.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella pinnipedialis
M163/99/10]
Length = 295
Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 110/291 (37%), Positives = 169/291 (58%), Gaps = 6/291 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I A+ + A +D TG V + W PASLTK+M
Sbjct: 2 MSKSLRIWFAAVAFSGIALSGAAANPS----IAVDVATGKVYEQQDAFQRWYPASLTKMM 57
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TAYV F L+ + L +P+ ++ NAS+ PPS +K GS MTLD AL +++VKSAND++
Sbjct: 58 TAYVTFRALQSGQMTLESPVRMTVNASKEPPSKMGYKPGSIMTLDTALNIMLVKSANDVS 117
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE++ TE FVQ MN ++ LG+ +HF N +G+ +YTTARD+A+L+ +++ +
Sbjct: 118 VAVAEAVGGTEAAFVQRMNAEARRLGMFGSHFANPNGLHDPNNYTTARDLAVLAVQLRRE 177
Query: 181 FPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
FPQY HYF + ++ K N N +G + GADGMKTGF CASGFN+ SA + ++
Sbjct: 178 FPQYAHYFATEAIDPGAGKKVEANYNILLGRYDGADGMKTGFVCASGFNLAGSATRNGRT 237
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
++A++LGA + TR +A +++ F ++ ++ NL+ V
Sbjct: 238 VLAIVLGADRQETRAIQAAQMMTDAFRARSSGGPTLATLRPAQTANLNQAV 288
>gi|322411118|gb|EFY02026.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 412
Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 76/366 (20%), Positives = 145/366 (39%), Gaps = 31/366 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ ++ + + P S + + ++ ++G ++ E D AS+TKL+
Sbjct: 2 IKRLFFVLLITLAFRATPINSDDFSVAAKHAIAVEVDSGKILYEKEADKAVPVASITKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + K + +TIS ++ T+ LK LIV +AN
Sbjct: 62 TTYLVYKEIANGKLEWGSSVTISNYPYELTTNYSISNVPLDARKYTVKELLKALIVTNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--------------GH 163
A+A+AE + TE KFV M+ K G+S +NA G+ H +
Sbjct: 122 SPAIALAEKMGGTEPKFVDKMSQQLKEWGISDAKLVNATGLTNHFLGKNKYPKTEDEDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW----AVGTFLGADGMKTG 219
+ARD+AI++ + T+FP+ + G+ + N+ G DG+ G
Sbjct: 182 LFSARDLAIIARHLLTEFPEVLKITSKPSANFAGQTIYSYNYMLKDMPYYRDGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKINY 275
++ G + VA++++ +I V+L A D + LL N + +N
Sbjct: 242 YSEKGGASFVATSVENRMRIITVVLNADQAQEDEFAVFSATNQLLQYLLTNFQKVQVLNK 301
Query: 276 -----IIKDFYQQNLSNEVPNISEE-VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
I + + VP ++E+ + + + KD +K +L
Sbjct: 302 SKSGQIKAFPILDSPNKTVPLVAEKNLSLIKPANSKIKKSLHITKDSSIISAPIKKGQVL 361
Query: 330 KNKITK 335
+
Sbjct: 362 AKATLQ 367
>gi|294501119|ref|YP_003564819.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551]
gi|294351056|gb|ADE71385.1| D-alanyl-D-alanine carboxypeptidase [Bacillus megaterium QM B1551]
Length = 382
Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 69/342 (20%), Positives = 134/342 (39%), Gaps = 18/342 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ + + + + + +P S A + L++ +G V+ D AS+TK+M
Sbjct: 6 KSIIYLFIVLLCLSGWPSTSSAAGSVSAHSAILMEQKSGRVLYAKNADQVSRIASITKIM 65
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA + K + +T+S +A S+ +G + L + + L+++S ND A
Sbjct: 66 TAILAIESGK-----INKTVTVSHSAVGVEGSSVYLVEGEKIKLKDLVYGLMLRSGNDAA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE++ +E FV MN ++ +G++ T F N HG+ H ++ + L R +
Sbjct: 121 VAIAEAVGGSEDGFVYLMNKKAEEIGMTNTTFQNPHGLDDHENHRSTAHDMALLMRYAMN 180
Query: 181 FPQYMHYFQIKGLEIKGKK------YPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAI 233
+ K +K + + N N + G KTG+T + +V +A
Sbjct: 181 NKIFKEISGTKVYRMKHPEEKWDRVWKNKNKLLTTLYAYCTGGKTGYTKLAKRTLVTTAT 240
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ LIAV + A D S+ F + + + I
Sbjct: 241 KDGMDLIAVTINAPDD---WNDHISMYENAFDKYDMTSLAAKGELADIKDSFYKDQLYIK 297
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
V + + ++K + +++ + N + K
Sbjct: 298 RNVVYPLTKKEQSSVEVKTTLIQ--PKKQWKETGEVPNVVGK 337
>gi|260549669|ref|ZP_05823886.1| penicillin-binding protein 6B [Acinetobacter sp. RUH2624]
gi|260407186|gb|EEX00662.1| penicillin-binding protein 6B [Acinetobacter sp. RUH2624]
Length = 439
Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 91/343 (26%), Positives = 157/343 (45%), Gaps = 15/343 (4%)
Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS
Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ +K K L IT + + ++ S K G +++D L LIV
Sbjct: 61 LTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L
Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A
Sbjct: 181 SQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240
Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ + L+ ++LG R +++ L+++ + D I +
Sbjct: 241 RPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVIPEQKLIAELPVIK 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + E + + D + ++I +L
Sbjct: 301 STLKMFKVETKQPTIVTTSLYAEP-APIDLNTFDYATQRIQVL 342
>gi|309800179|ref|ZP_07694364.1| penicillin-binding protein 3 [Streptococcus infantis SK1302]
gi|308116187|gb|EFO53678.1| penicillin-binding protein 3 [Streptococcus infantis SK1302]
Length = 397
Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 68/352 (19%), Positives = 141/352 (40%), Gaps = 31/352 (8%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + + ++ N+G ++ E P AS++KL+T Y+V+ L++ K
Sbjct: 16 SATTVSAQDFDVAAKHAIAVEANSGKILYEKDATQPVEIASISKLLTVYLVYEALEQGKI 75
Query: 75 MLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
L+TP+ IS + +++ + T++ L+ +V SAN A+A+AE + +E
Sbjct: 76 SLSTPVEISDYPYQLTTNSAASNVPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSE 135
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRI 177
K FV M + G+ +N G+ + +A D+A+++ +
Sbjct: 136 KDFVDMMKAKLQEWGIQDATLVNTTGLNNETLGTNIYPGSKKDDENKLSAYDVAVVARNL 195
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAI 233
+PQ + + G +TN+ + G DG+KTG T +G + V + +
Sbjct: 196 ILKYPQVLEITKKPSSTFAGMTIHSTNYMLEGMPAYRGGVDGLKTGTTDKAGASFVGTTV 255
Query: 234 QGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKKINYI------IKDFYQQ 283
+ +I V+L A +++T R ++S+L N + + +
Sbjct: 256 EKGMRIITVVLNADNQDTNPYARFTATSSILDYISSNFSLQTIVKQGESYEDSKSPVLDG 315
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E++ Q+ + + D H E T++ + +
Sbjct: 316 KEDTVTAVAKEDIKIVQRLGSRTQSTITYTADTTEHTAPLEAGTVVGHLTYE 367
>gi|163791201|ref|ZP_02185618.1| hypothetical protein CAT7_03879 [Carnobacterium sp. AT7]
gi|159873532|gb|EDP67619.1| hypothetical protein CAT7_03879 [Carnobacterium sp. AT7]
Length = 440
Score = 155 bits (390), Expect = 1e-35, Method: Composition-based stats.
Identities = 72/391 (18%), Positives = 135/391 (34%), Gaps = 59/391 (15%)
Query: 1 MRQF----LVIIAMAML----------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENY 46
M++F V + M +L + + + +++ TG V+
Sbjct: 1 MKKFKKISTVFVTMLLLGTFSPLISMDTTVSAATIEQPKVEAAAAFIIEPTTGKVLLNQN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STM 102
D AS+TK++T Y++ +K I IS+ A E + T
Sbjct: 61 GDEKLGIASMTKMITEYILLETIKNGDLAWDDQIEISEYAHEISQNYELSNVPLRIDDTY 120
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+++ + + + SAN +A+AE + EK FV M+ ++ G++ N G+
Sbjct: 121 SVEELYQAMAIYSANGATIALAEHIAGDEKAFVDMMHEKVESWGITNYEIYNTTGLSNFD 180
Query: 163 --------------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNT 203
+ TAR MAI++ + TDFP + I + N
Sbjct: 181 LNGNIYPGSTENSENSMTARGMAIIAQHLITDFPDVLKTSSISKKTFREGTSDAIEMTNF 240
Query: 204 NWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKV 255
NW DG+KTG T +G ++ +A Q +I +++ A + R
Sbjct: 241 NWMLPGLDHERENVDGLKTGTTDFAGASMTGTAEQEGMRIITIVMNATNGQKDLGKRFVE 300
Query: 256 SASLLSMGFYNKTDRKKINYIIK-------DFYQQNLSNEVPNISEEVCTTQK---EIIN 305
+ ++ F N + + + I +V + N
Sbjct: 301 TDKMMDWAFENWSKVQVFKEGQTLDNVDPAKVDKGKKDTVKLAIQSDVSLLVPTNTDSAN 360
Query: 306 YNTQMKEAKDKESH----FIDFEKITLLKNK 332
T ++ KD + +K T +
Sbjct: 361 TETTVQLQKDLLNESGHLTAPIKKGTEVGTV 391
>gi|262375440|ref|ZP_06068673.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter lwoffii SH145]
gi|262309694|gb|EEY90824.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter lwoffii SH145]
Length = 437
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 86/314 (27%), Positives = 146/314 (46%), Gaps = 14/314 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ + +IA+ L + E+ + +T+LD+ +G VIAE+ D PAS
Sbjct: 1 MKYIISLIAVFSLFISAFSHAALLNIVPESVEAEAWTILDSQSGQVIAEHNADVQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITIS--KNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ ++ K +T + + S K+G +++D L LI+
Sbjct: 61 LTKMMVAYIALKEIEAGKLDKNEVLTATSVVKTVMWDESQMYLKEGDLISVDQLLAGLII 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + +FV+ MN +K LG+ T+F N G+ HY+TA D+A L
Sbjct: 121 MSANDAAVTLAEKISGGIPQFVERMNQEAKALGMQHTNFQNPAGITMPEHYSTAADLARL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
S + + P Y++Y + + TN + DG+KTGFT A+G+N+ +A
Sbjct: 181 SMAVVNETPDYLYYSKQPSFTYNQHFHRATNRVLQVDPTVDGLKTGFTRAAGYNLALTAN 240
Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ ++ LI V+LG R +VS L+++ + + I +
Sbjct: 241 RVTADFEMPNRRLIVVVLGTNSAAKRAEVSHKLMNLAYAYTRNEVAIKDQQLLAELPVIK 300
Query: 287 NEVPNISEEVCTTQ 300
+ + + Q
Sbjct: 301 STLKMFKVQTKQPQ 314
>gi|291537069|emb|CBL10181.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1]
Length = 468
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 72/350 (20%), Positives = 124/350 (35%), Gaps = 29/350 (8%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+M + + P +++ +TG V+ + PAS+TK+MT +
Sbjct: 27 SMCIPVYAAEYWPEGPEVVSPNVIVMEASTGTVLYDCDSLEAHYPASITKIMTTLIALEN 86
Query: 69 LKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L +T S S G MT++ L +++ SAN+ A A+AE +
Sbjct: 87 SD-----LNDIVTFSDAAIDNTEGSGIARDYGEQMTMEQCLYAVMLASANECAYAVAEHV 141
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY--- 184
T + FV MN +K LG THF N HG+ HYT DMA+++ +
Sbjct: 142 GGTIENFVAMMNEKAKELGCQNTHFANPHGLHDENHYTCCYDMALIARAAYQNETFRIIV 201
Query: 185 ---MHYFQIKGLEIKGKKYPNTNWAVGT-------FLGADGMKTGFTCASGFNIVASAIQ 234
+ + N N + + G G KTG+T A+ +V A +
Sbjct: 202 GTARYTIPPTNKHAEQTDLQNHNEMLYPFQTNKYVYDGCTGGKTGYTNAANSTLVTYAER 261
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
+LI V++ N S +L F N + + N +E
Sbjct: 262 DGMTLICVVMNTQSPNQ-WLDSRNLFDYCFDNFQLFNIAENETNYTSVEQKNAGTLNTNE 320
Query: 295 E---------VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + T D + + + T +++ K
Sbjct: 321 PFVDIDKDAGIVLPKTAEFSDATSKIVYDDVTNDTVGTIEYTYAGHEVGK 370
>gi|331003847|ref|ZP_08327339.1| hypothetical protein HMPREF0491_02201 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412039|gb|EGG91436.1| hypothetical protein HMPREF0491_02201 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 455
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 69/341 (20%), Positives = 131/341 (38%), Gaps = 29/341 (8%)
Query: 1 MRQFL-----VIIAMAMLSNIF-----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
+++ + +++++ M+S +I K + + NTG + E D
Sbjct: 3 IKKLVAGGLSILLSIGMISFSSEYAMVTHAAIPPDIKSQGAAVYNANTGEFLYEKNGDRQ 62
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYPPSNSTFKKGSTMTLDNA 107
+ PAS+TK+MT +V L + S+ E + +G M++ +A
Sbjct: 63 FYPASITKIMTTLIVLEQA-----NLNDTVVFSRAATTNLEAGATRLGVSEGDKMSVRDA 117
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
L ++ SAN+++ +AE + + F MN ++ +G + T+F+N G+ H TTA
Sbjct: 118 LYGTMLASANEVSNGLAEYVGGSIAGFSSMMNARAREIGATNTNFVNPSGLNNQNHVTTA 177
Query: 168 RDMAILSWRIKTDFP---------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
+DMA ++ + + K K + + G G KT
Sbjct: 178 KDMARIAAEAFRNPDFRVIAGTKVYNFPAIKTKAEVTPIKMHHRMVNGSDNYPGVIGGKT 237
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
G+T ++G +V A + LI V+L + T + +LL GF T
Sbjct: 238 GYTRSAGNTLVTCAERNGVRLIVVVLKSPS--THYADTRALLDYGFEVATTGGVNISSKD 295
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ + V +T + + K +S
Sbjct: 296 TGAKNAVVKAKQETKAVVESTSQAQVAIADSAKVDAAPKSI 336
>gi|30019617|ref|NP_831248.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|29895161|gb|AAP08449.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
Length = 386
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 87/336 (25%), Positives = 135/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + M+ +++ P + A L++ +G V+ P AS+
Sbjct: 13 MRRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 72
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 73 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 127
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAES+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 128 NDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 187
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 188 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 246
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+G LI V L A +L GF K + +
Sbjct: 247 SKGGLDLIVVTLSASSD---WDDHMNLFDKGFDRFKQTKVLGQGAIAEINEKKYANHVYT 303
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK + D K+
Sbjct: 304 KNSFSVPLTEEEKKNVVLKVELDKSTKLTDGVKVGK 339
>gi|118589859|ref|ZP_01547263.1| penicillin binding protein [Stappia aggregata IAM 12614]
gi|118437356|gb|EAV43993.1| penicillin binding protein [Stappia aggregata IAM 12614]
Length = 384
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 74/345 (21%), Positives = 135/345 (39%), Gaps = 13/345 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
MR+ + + + S P + K P L + +G ++ PD P++P +L K+
Sbjct: 1 MRRGALFSFLVVASIAGPAQAAETIVTKAPMAFLYEPASGTILFAKEPDRPFSPGALVKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIV 113
MTA VF LK+ L +S++A + S + +++ LK L+V
Sbjct: 61 MTAATVFKSLKDGDLKLDQTCKVSEHAWRTGGAPSGRGATMFAAIKSDIPVEDLLKGLLV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+ ND A+ +AE L +E+ F M + +G+ + F N+ G + TT RD A L
Sbjct: 121 HNGNDAAIVLAECLDGSEEAFAVRMTEFAHAIGMKNSRFGNSTGYPEVPSQTTVRDQARL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ I F I N N +G DG+ G +G++ + S
Sbjct: 181 AEYILESHADLYPMFAIPEFTWNKIFQRNKNPLLGEIRNLDGLGGGNDAEAGYSGLGSVD 240
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVP 290
+ + +IA + G R + ++ + T + + +S VP
Sbjct: 241 RNGRRVIAAVAGLSSDKHRLQTLKEVIEGAWEYFTVQTLFSAGDVVADGRVFGGISASVP 300
Query: 291 NISEE---VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+SEE V ++Y ++ + EK+ ++
Sbjct: 301 LVSEEGVNVLLPLGGTLDYRIRVIYNGPLAAPVQAGEKVGEIRVI 345
>gi|331091250|ref|ZP_08340091.1| hypothetical protein HMPREF9477_00734 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404697|gb|EGG84236.1| hypothetical protein HMPREF9477_00734 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 400
Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats.
Identities = 77/361 (21%), Positives = 136/361 (37%), Gaps = 33/361 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R +V+I S + + L+D ++G ++ E D AS TK+MT
Sbjct: 8 RIGIVLIVTIFFSITAKAVEKPKELYAQSAVLMDADSGRILFEKNGDQRRAMASTTKIMT 67
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + L + S+NA++ P + +KG T L + L L+++S ND AV
Sbjct: 68 CILALE-----RGGLEGEVVASENAAKQPKVHLGVEKGETFRLRDLLYSLMLESHNDSAV 122
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRI 177
IAE + + +KF + MN +K +G T+F+ +G+ H TTA ++A +
Sbjct: 123 MIAEKVGGSVEKFAKMMNEKAKEIGCINTYFITPNGLDAKDDTGKHSTTAGELAKIMSYC 182
Query: 178 KTDFPQYMHYFQIK---------GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
T P+ + I + + N N + GA KTGFT +G+
Sbjct: 183 ITQSPKKEEFLAITGQKSYQFTNMEKTRTYICHNHNAFLEMMEGAISGKTGFTGEAGYCY 242
Query: 229 VASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRKK-----INYIIKDF 280
V + + D++ + +LG N + + L+ G + + I +
Sbjct: 243 VGALRRNDRTFVVALLGCGWPNNKTYKWSDTKKLMQYGLDSFQYKDIEPAIYFETIPVEN 302
Query: 281 YQQNLSNEVPNISEEVCTTQKEIIN-------YNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ C K+ I+ + E K K+ EK
Sbjct: 303 GIPQDEDFTEKAQLRFCVKGKKKISERILMSDEESVRVETKIKKEWKAPIEKGERAGTVT 362
Query: 334 T 334
Sbjct: 363 Y 363
>gi|310642604|ref|YP_003947362.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Paenibacillus
polymyxa SC2]
gi|309247555|gb|ADO57122.1| Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
polymyxa SC2]
Length = 420
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 80/277 (28%), Positives = 117/277 (42%), Gaps = 13/277 (4%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ + A +L+D +G +I D ASLTK+MTA V +
Sbjct: 44 VLGAVTTEATPPALGTHAQAASLIDVTSGRIIYSAEGDRELRIASLTKIMTAIVAIEHGR 103
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L + +S A S+ + G MTL+N L L+++S ND A AIAE + T
Sbjct: 104 -----LQDRVKVSSTAYAKEGSSLFLQMGEQMTLENMLYGLMLRSGNDAASAIAEHVGGT 158
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
E+ FV MN+ + LGL+ THF N HG+ GHY++A DMA L+ +
Sbjct: 159 EEGFVHLMNDKAVQLGLNHTHFANPHGLDADGHYSSANDMARLTAYALHNPTFARIVKTE 218
Query: 191 KGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ N N + + GADG+KTGFT + +V+SA + + L AV L
Sbjct: 219 LKKAPNPNDSWDYSWHNKNKMLRLYEGADGVKTGFTKKAFRCLVSSATREGRQLAAVTLN 278
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
D A +L GF +
Sbjct: 279 DGDD---WNDHARMLDYGFRYYPLIPITDKQQPIDGY 312
>gi|324325585|gb|ADY20845.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 374
Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats.
Identities = 83/336 (24%), Positives = 134/336 (39%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 1 MRRICVIITLLIMYASVIPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K + +S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----EKVLVSNEAVRVEGSAIYLKAGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF + +
Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTNVVGQGALAEITEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK + D K+
Sbjct: 292 KNSFAVPLTEQERKNVVLKVELDKSAKLKDGVKVGK 327
>gi|229102172|ref|ZP_04232882.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
gi|228681242|gb|EEL35409.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
Length = 378
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 83/336 (24%), Positives = 136/336 (40%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQSSGRVLYGKAEHEPQKIASI 64
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 65 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 179
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 180 YAMGN-ETFKKIFGTKKYKSNSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGALAEINEKKYANHVYT 295
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK + + K+
Sbjct: 296 KNSFSVPLTEEEKKNVVLKVELDKSAKLTEGVKVGK 331
>gi|325265499|ref|ZP_08132221.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
gi|324029278|gb|EGB90571.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
Length = 424
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 78/370 (21%), Positives = 137/370 (37%), Gaps = 42/370 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFLSI----------AETNKLPYYTLLDTNTGHVIAENYPDHPW 51
+Q I + + S + L+D ++G ++
Sbjct: 17 KQITAFILICCMVFAGAGGSAVMEVRAESEEPDNLYAQSAVLMDADSGRILFSKNGQQEK 76
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS TK+MT + + + L + +T+S A+ P + KG T L + L L
Sbjct: 77 AMASTTKIMTCILALEYGR-----LDSEMTVSSYAASQPKVHLGAYKGETFYLRDLLYSL 131
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTA 167
+++S ND AV IAE++ + + F MN +K LG + T+F+ +G+ H+TTA
Sbjct: 132 MLESHNDAAVIIAENIGNSVEGFADMMNAKAKELGCNHTYFITPNGLDAADENGSHHTTA 191
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---------YPNTNWAVGTFLGADGMKT 218
D+A + D PQ + +I N N + GA KT
Sbjct: 192 EDLARIMKYCIMDSPQKEMFLEITRTPSYQFTDCSGKSTYSCTNHNAFLQMMDGALSGKT 251
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRKK--- 272
GFT +G+ V S + D++ I +L N + + +L++ G N R
Sbjct: 252 GFTGDAGYCYVGSLRRDDRTFIVALLACGWPNNKSYKWADTKALMNYGLENYEYRDIWQD 311
Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQ-------KEIINYNTQMKEAKDK-ESHFIDFE 324
I+ +V K ++ + Q++ DK E+
Sbjct: 312 IDAGTAAVKNGIDKAHPFWTETDVPLEVMGADRDWKLLLKTDEQVEMNWDKEETLEAPVV 371
Query: 325 KITLLKNKIT 334
K + +
Sbjct: 372 KGQKVGEVVY 381
>gi|86357779|ref|YP_469671.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
gi|86281881|gb|ABC90944.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CFN 42]
Length = 360
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 70/309 (22%), Positives = 126/309 (40%), Gaps = 11/309 (3%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+++ +TG V+ D ++PASL KLMT +VF + + + L T +S+ A +
Sbjct: 1 MIEASTGTVLLAKNEDQSFSPASLAKLMTMDLVFDAVTKGQITLDTEYPVSEYAWRTGGA 60
Query: 93 -----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
S + +++ +K + ++ AND + IAE + +E++F Q M ++ LG+
Sbjct: 61 PSRTATMFAALKSRVRVEDLIKGVAIQGANDSCIIIAEGMAGSEQQFAQSMTRRARELGM 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
F N+ G+ TAR+M L+ ++ +P YF + E N N +
Sbjct: 121 EKAVFGNSTGLPDGKSKVTAREMVTLAAALQQSYPNLYPYFAQQDFEWNKIFQRNRNPLL 180
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
G LGADG+ TGF G++IVAS + + L + G R + + +L G
Sbjct: 181 GLDLGADGLATGFAEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGLTAF 240
Query: 268 TDRKKINY----IIKDFYQQNLSNE--VPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
R+ Y + V V + ++ +
Sbjct: 241 ESRQIFTEHEVIGAASVYGGSARTVDLVAKAPVSVYIPISNPDRLSARIVYHWPLTAPVK 300
Query: 322 DFEKITLLK 330
+ L+
Sbjct: 301 PDYQAGTLR 309
>gi|260556621|ref|ZP_05828839.1| penicillin-binding protein 6B [Acinetobacter baumannii ATCC 19606]
gi|260409880|gb|EEX03180.1| penicillin-binding protein 6B [Acinetobacter baumannii ATCC 19606]
Length = 439
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 90/343 (26%), Positives = 157/343 (45%), Gaps = 15/343 (4%)
Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS
Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ +K K L IT + + ++ S K G +++D L LIV
Sbjct: 61 LTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + FV+ MN ++ LG+ THF N G+ HYTTA D+++L
Sbjct: 121 MSANDAAVTLAEKISGDVPHFVKRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A
Sbjct: 181 SQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240
Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ + L+ ++LG R +++ L+++ + D I +
Sbjct: 241 RPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVIPEQKLIAELPVIK 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + E + + D + ++I +L
Sbjct: 301 STLKMFKVETKQPTIVTTSLYAEP-TPIDLNTFDYATQRIQVL 342
>gi|160880714|ref|YP_001559682.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
phytofermentans ISDg]
gi|160429380|gb|ABX42943.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
phytofermentans ISDg]
Length = 429
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 66/326 (20%), Positives = 126/326 (38%), Gaps = 29/326 (8%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D + G V+ AS TK+MT VV L +T++
Sbjct: 72 QLNALSACLMDASNGRVLYGKDAYKEMPMASTTKIMTLLVVLEKA-----NLDDVVTVTS 126
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NA++ P + G L + L L+++S ND AVAIAE + + + F M +K
Sbjct: 127 NAAKQPDVQLNIQTGEQYILRDLLYSLMLESHNDTAVAIAEHVGGSVEGFCNMMTEKAKE 186
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------K 198
LG + T F +G+ GHYTTARD+++++ + P++ +
Sbjct: 187 LGANHTSFKTPNGLDADGHYTTARDLSLIASYAIKN-PEFCKIVGTATYQFNEVNHKRSF 245
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKV 255
N + + GA G+KTGFT +G+ V + ++L++ +LG+ + +
Sbjct: 246 NVNNRDRFLYMMKGAIGIKTGFTGKAGYCFVGAVNIDGKTLVSTVLGSGWPPHKTYKWAD 305
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ--------------K 301
+ L+ G N + + + + ++ + + +
Sbjct: 306 TTKLMEYGLNNFNVYSLYEKLTPGSECVKVPEVISVHNGKINSVKLISTDELLSEKLLLR 365
Query: 302 EIINYNTQMKEAKDKESHFIDFEKIT 327
E + ++ + K+
Sbjct: 366 EGEEVSIKINLLDHITAPTKAGVKVG 391
>gi|169795133|ref|YP_001712926.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
[Acinetobacter baumannii AYE]
gi|213158204|ref|YP_002320255.1| D-ala-D-ala-carboxypeptidase penicillin-binding protein
[Acinetobacter baumannii AB0057]
gi|215482680|ref|YP_002324876.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii
AB307-0294]
gi|301345223|ref|ZP_07225964.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB056]
gi|301511561|ref|ZP_07236798.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB058]
gi|301596993|ref|ZP_07242001.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii AB059]
gi|332853987|ref|ZP_08435103.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6013150]
gi|332869733|ref|ZP_08438921.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6013113]
gi|169148060|emb|CAM85923.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
[Acinetobacter baumannii AYE]
gi|193077983|gb|ABO12897.2| putative D-ala-D-ala-carboxypeptidase penicillin-binding protein
[Acinetobacter baumannii ATCC 17978]
gi|213057364|gb|ACJ42266.1| D-ala-D-ala-carboxypeptidase penicillin-binding protein
[Acinetobacter baumannii AB0057]
gi|213986927|gb|ACJ57226.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii
AB307-0294]
gi|332728269|gb|EGJ59651.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6013150]
gi|332732635|gb|EGJ63868.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6013113]
Length = 439
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 91/343 (26%), Positives = 157/343 (45%), Gaps = 15/343 (4%)
Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS
Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ +K K L IT + + ++ S K G +++D L LIV
Sbjct: 61 LTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L
Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A
Sbjct: 181 SQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240
Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ + L+ ++LG R +++ L+++ + D I +
Sbjct: 241 RPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVIPEQKLIAELPVIK 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + E + + D + ++I +L
Sbjct: 301 STLKMFKVETKQPTIVTTSLYAEP-TPIDLNTFDYATQRIQVL 342
>gi|328543897|ref|YP_004304006.1| D-alanyl-D-alanine carboxypeptidase family [polymorphum gilvum
SL003B-26A1]
gi|326413641|gb|ADZ70704.1| D-alanyl-D-alanine carboxypeptidase family [Polymorphum gilvum
SL003B-26A1]
Length = 393
Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats.
Identities = 75/328 (22%), Positives = 127/328 (38%), Gaps = 11/328 (3%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
F + + L+D ++ V+ PD + P SL K+MTA VVF LK +
Sbjct: 27 AFAAAADVLETRARSAFLIDHSSRTVLYAKAPDEAFAPGSLAKVMTAAVVFDALKSGEVF 86
Query: 76 LTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
T +S++A S S + + + L+ L+V +AND A+ +AE L +
Sbjct: 87 EETLFKVSEHAWRTGGAPSRTSTMFAAVRSEIPVADLLRGLLVHNANDAAIVLAEGLAGS 146
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
E F Q M + +G+ ++ F N G G+ TTARDMA L+ I F +
Sbjct: 147 ETAFAQRMTALATRIGMISSRFANPTGFEDPGNRTTARDMARLAAYILDTHRTRYELFSL 206
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
N N +G G DG+ G + A G++ +AS + + +IAVI G
Sbjct: 207 PEFTWNRIFQRNKNPLLGEIRGLDGLGAGLSQADGYSGLASVERDGRRVIAVIAGLDTDK 266
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEE---VCTTQKEII 304
R L+ + + + VP ++++ V
Sbjct: 267 MRLAALRDLVEGAWEAFQVQILFGRGEPVASARVYGGETGSVPLVAKDPIAVLLPVGGNR 326
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNK 332
+Y + + + + L+
Sbjct: 327 DYRLRAVYSGPFVAPVVAGAPAGELRVL 354
>gi|228938680|ref|ZP_04101285.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228971562|ref|ZP_04132186.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978173|ref|ZP_04138551.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
gi|228781645|gb|EEM29845.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
gi|228788221|gb|EEM36176.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228821056|gb|EEM67076.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 378
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 85/336 (25%), Positives = 133/336 (39%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ +G V+ P AS+
Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 65 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAES+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 120 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 179
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 180 YAMGNES-FKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHVYT 295
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK D K+
Sbjct: 296 KNSFSVPLTEEERKNVLLKVELDKSITLEDGVKVGK 331
>gi|260682216|ref|YP_003213501.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
gi|260685815|ref|YP_003216948.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
gi|260208379|emb|CBA60888.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
gi|260211831|emb|CBE02232.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
Length = 414
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 76/347 (21%), Positives = 146/347 (42%), Gaps = 21/347 (6%)
Query: 5 LVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + ++ +F F N L+D T ++ E D ASL+K+MT
Sbjct: 15 ILALIFIFITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMMTFL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + + + T + I K+ + S K G ++L ++ L++ S ND A+AI
Sbjct: 75 LAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAAIAI 134
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----------GHYTTARDMAIL 173
A+ + KTEK FV MN ++ +G+ T++ N +G+ + + +TA D+ L
Sbjct: 135 AKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHDIVTL 194
Query: 174 ---SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + + Q+ K + NTN + + G DG+KTG+T +G+ +
Sbjct: 195 GKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGYCLAF 254
Query: 231 SAIQ-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
S + + LI V+LG ++ R SA+LL G N +K +
Sbjct: 255 SMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYGKDNFHSKKIAHKGDIIETPC 314
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ I+ +V +++ N + ++ K ++
Sbjct: 315 VDGIDDFKITVKVDKDLYGVVSDNENINPKVVFKNMNYPIHKGDIVG 361
>gi|326939188|gb|AEA15084.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 374
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 85/336 (25%), Positives = 133/336 (39%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ +G V+ P AS+
Sbjct: 1 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAES+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGNES-FKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK D K+
Sbjct: 292 KNSFSVPLTEEERKNVLLKVELDKSITLEDGVKVGK 327
>gi|312135071|ref|YP_004002409.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1
[Caldicellulosiruptor owensensis OL]
gi|311775122|gb|ADQ04609.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Caldicellulosiruptor owensensis OL]
Length = 451
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 77/349 (22%), Positives = 142/349 (40%), Gaps = 27/349 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F ++ + S L++ +TG ++ E P+ PAS TK++TA
Sbjct: 19 FAILFTYPFYTYSQQEASDKLGLSAKSAILVEAHTGQILFEKNPNLRCFPASTTKVLTAL 78
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
V S+ L +S A+ P S+ G T++ + L +++ SAND A
Sbjct: 79 VAISYEH----DLNKIFKVSSKATMIEPGSSSYYLNPGETISFQDLLYAMLLISANDAAN 134
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
IAE++ + +FV+ MN +K++G ++F+N HG+ HYTTA D+++++ + +
Sbjct: 135 VIAENIAGSIPEFVKKMNEYAKSIGAKNSYFVNPHGLHSPEHYTTAYDLSLIARQAYQNE 194
Query: 182 P--------QYMHYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNI 228
+Y + + + N N + + A G+KTG+T + +
Sbjct: 195 ILRKIFSTVEYRITTASMHEKPEWQIIYNINKLLRKNSKYYYPYATGIKTGYTTQAKRCL 254
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ASA + D LIA+IL + D + L + GF N K +
Sbjct: 255 IASAKKDDIELIAIILFSEDA---FSDAIKLFNYGFNNFKREKLFSENQIVGKVLIDKTN 311
Query: 289 VPNISEEVCTTQKEIINYNTQMK-----EAKDKESHFIDFEKITLLKNK 332
+ + + N + + + I K T++ N
Sbjct: 312 HKWLDGYIKIPVYVLQNVYSPAESNFTYTVDFSKDLKIPIYKDTVIGNV 360
>gi|296449308|ref|ZP_06891091.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
difficile NAP08]
gi|296880760|ref|ZP_06904710.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
difficile NAP07]
gi|296261835|gb|EFH08647.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
difficile NAP08]
gi|296428255|gb|EFH14152.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
difficile NAP07]
Length = 414
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 78/352 (22%), Positives = 147/352 (41%), Gaps = 22/352 (6%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++Q ++ + ++ F F N L+D T ++ E D ASL+K
Sbjct: 10 IKQLTILTLIFIFITPGFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSK 69
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + + + + T + I K+ + S K G ++L ++ L++ S ND
Sbjct: 70 MMTFLLAIEAIDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGND 129
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----------GHYTTAR 168
A+AIA+ + KTEK FV MN ++ +G+ T++ N +G+ + + +TA
Sbjct: 130 AALAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENISTAH 189
Query: 169 DMAIL---SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
D+ L + + + Q+ K + NTN + + G DG+KTG+T +G
Sbjct: 190 DIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAG 249
Query: 226 FNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+ + S + + LI V+LG ++ R SASLL G N +K +
Sbjct: 250 YCLAFSMMIPKDAKNERNHRLIGVVLGDGNKKNRISSSASLLKYGKDNFHSKKIAHKGDI 309
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ I +V +++ N + ++ K ++
Sbjct: 310 IETPCVDGIDDFKIKVKVDKDLYGVVSDNENINPKVVFKNMNYPIHKGDIVG 361
>gi|126698096|ref|YP_001086993.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile 630]
Length = 414
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 76/347 (21%), Positives = 146/347 (42%), Gaps = 21/347 (6%)
Query: 5 LVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + ++ +F F N L+D T ++ E D ASL+K+MT
Sbjct: 15 ILALIFIFITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMMTFL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + + + T + I K+ + S K G ++L ++ L++ S ND A+AI
Sbjct: 75 LAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAAIAI 134
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----------GHYTTARDMAIL 173
A+ + KTEK FV MN ++ +G+ T++ N +G+ + + +TA D+ L
Sbjct: 135 AKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHDIVTL 194
Query: 174 ---SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + + Q+ K + NTN + + G DG+KTG+T +G+ +
Sbjct: 195 GKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGYCLAF 254
Query: 231 SAIQ-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
S + + LI V+LG ++ R SA+LL G N +K +
Sbjct: 255 SMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYGKDNFHSKKIAHKGDIIETPC 314
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ I+ +V +++ N + ++ K ++
Sbjct: 315 VDGIDDFKITVKVDKDLYGVVSDNENINPKVVFKNMNYPIHKGDIVG 361
>gi|322411635|gb|EFY02543.1| putative D,D-carboxypeptidase, penicillin-binding protein
[Streptococcus dysgalactiae subsp. dysgalactiae ATCC
27957]
Length = 409
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 78/379 (20%), Positives = 147/379 (38%), Gaps = 43/379 (11%)
Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++ L + +A L+ + +++ ++G V+ E P ASLT
Sbjct: 1 MKKRWAILFFVVLACSGLGKTVLAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVK 114
KL+T Y+V +K + L+ + +S A ++ ++ + LK +V
Sbjct: 61 KLVTVYLVLDKVKSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQKAYSVQDLLKATLVA 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-------------- 160
S+N A+A+AE + +E FV M G+++ +NA G+
Sbjct: 121 SSNSAAIALAEKVAGSEPNFVAQMRIQLSRWGITSGKILNASGLPNEVLKDHRYPGSALE 180
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGM 216
+ +ARD+AI++ + DFP+ + + ++ G + N + G DG+
Sbjct: 181 EENILSARDIAIVTMHLLEDFPEILEITKQTEVDFAGNSIHSFNQLLLGMAKGRAGVDGL 240
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKK 272
KTG T +G +V ++I+ LI VIL A NTR + + LL RK
Sbjct: 241 KTGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANRLLDYVAKRYHRRKI 300
Query: 273 INYI----IKDFYQQNLSNEV--PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
+ + F N + + ++++V + +S K
Sbjct: 301 LKKGSLMTERPFSVVNGTAQTLSAYVTKDVTLVLGTDELAPRPKQFVVSTDSLLAPIAKG 360
Query: 327 TLL---------KNKITKK 336
++ + KK
Sbjct: 361 EVVAYLASPRIAGERYLKK 379
>gi|291484748|dbj|BAI85823.1| penicillin-binding protein 5* [Bacillus subtilis subsp. natto
BEST195]
Length = 382
Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats.
Identities = 64/326 (19%), Positives = 120/326 (36%), Gaps = 16/326 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR F + + M+S + ++ A ++D +G V+ AS
Sbjct: 1 MRIFKKAVFVIMISFLIATVNVNTAHAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MTA + K + +T+S NA S +G + L + + L+++S
Sbjct: 61 ITKIMTAVLAIESGK-----MDQTVTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND AVAIAE + + FV MN ++ LG+ T F N HG+ H ++ + +
Sbjct: 116 GNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILT 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ Y K + + + N + + G KTG+T + +V++A
Sbjct: 176 KYAMKLKDYQKISGTKIYKAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTA 235
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LIAV + + + + F + + I
Sbjct: 236 SKDGIDLIAVTINDPND---WDDHMKMFNYVFEHYQTYLIAKKGDIPKLKGTFYESKAFI 292
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKES 318
++ E + ++ K
Sbjct: 293 KRDITYLLTEEEKEDVKINTTLLKPK 318
>gi|83311331|ref|YP_421595.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
AMB-1]
gi|82946172|dbj|BAE51036.1| D-alanyl-D-alanine carboxypeptidase [Magnetospirillum magneticum
AMB-1]
Length = 417
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 90/238 (37%), Positives = 136/238 (57%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+D +G VIAE+ P +PASLTK+MTAYV F+ +K K IT+S+ A+
Sbjct: 34 LAVDLGSGAVIAESRGGAPHHPASLTKMMTAYVAFAAIKAGKVSQDDVITVSERAASQGG 93
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
++ + G +TL ALK +IV+SAND AVA+AE + +E F M + LG++++
Sbjct: 94 ASLDLRPGERITLGAALKAMIVRSANDAAVAVAEHVGGSESAFASRMTEEAARLGMTSSS 153
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
F NA G+ GH ++ RDMA+L+ I+ DFP + F + KG+ P N +G +
Sbjct: 154 FRNASGMTAGGHVSSPRDMAVLAMAIERDFPTFRPLFSSRDTTWKGRVLPTVNGFLGAYA 213
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
GA+GMKTGFTC++G+N+VA A +G + +AV++GA R L+
Sbjct: 214 GAEGMKTGFTCSAGYNLVAIAHRGGRRALAVVMGAESSAQRLGAIRRLMDQALQATPT 271
>gi|75675891|ref|YP_318312.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
winogradskyi Nb-255]
gi|74420761|gb|ABA04960.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrobacter
winogradskyi Nb-255]
Length = 587
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 82/249 (32%), Positives = 134/249 (53%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D N+G ++ PD +PASLTK+MT Y++F L + L + + +S A+
Sbjct: 57 ASIVVDANSGATLSSTSPDSLRHPASLTKMMTLYMLFERLDAGRIGLDSEMRVSARAAAQ 116
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
P+ + G T+ +++A+K L+ KSAND AV IAE++ E F + M ++ LG++
Sbjct: 117 NPTKLGLRPGQTIRVEDAIKGLVTKSANDAAVVIAEAIAGDEDDFARMMTRKARALGMTR 176
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T + NA G+ TTARD A L ++ FP+Y YF +G+ N VG+
Sbjct: 177 TVYRNASGLPDDDQVTTARDQATLGRALQDRFPRYYRYFATTSFTFRGRTIRGHNRLVGS 236
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
G DG+KTG+ ASGFN+V + +G++ L+ V+LG +R+ LL+
Sbjct: 237 VDGVDGIKTGYIRASGFNLVTNLKRGNRHLVGVVLGGRSGGSRDATMRKLLAENLDKAAT 296
Query: 270 RKKINYIIK 278
R+ + I +
Sbjct: 297 RRTVAAIAE 305
>gi|142820|gb|AAA22377.1| penicillin-binding protein 5 [Bacillus subtilis]
Length = 382
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 77/336 (22%), Positives = 133/336 (39%), Gaps = 18/336 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR F + + M+S + ++ A ++D +G V+ AS
Sbjct: 1 MRIFKKAVFVIMISFLIATVNVNTAHAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MTA + K + +T+S NA S +G + L + + L+++S
Sbjct: 61 ITKIMTAVLAIESGK-----MDQTVTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILS 174
ND AVAIAE + + FV MN ++ LG+ T F N HG+ H HY+TA DMAIL+
Sbjct: 116 GNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILT 175
Query: 175 WRIK--TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ + I+ ++ + + G KTG+T + +V++A
Sbjct: 176 KYAIEAERLSKDFRHKNIQAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTA 235
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LIAV + + + + F + + I
Sbjct: 236 SKDGIDLIAVTINDPND---WDDHMKMFNYVFEHYQTYLIAKKGDIPKLKGTFYESKAFI 292
Query: 293 SEEVC--TTQKEIINYNTQMKEAKDKESHFIDFEKI 326
++ T++E N K K++ D KI
Sbjct: 293 KRDITYLLTEEEKENVKINTTLLKPKKAWEKDASKI 328
>gi|163760085|ref|ZP_02167168.1| putative penicillin-binding protein/D-alanyl-D-alanine
carboxypeptidase [Hoeflea phototrophica DFL-43]
gi|162282484|gb|EDQ32772.1| putative penicillin-binding protein/D-alanyl-D-alanine
carboxypeptidase [Hoeflea phototrophica DFL-43]
Length = 289
Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats.
Identities = 87/265 (32%), Positives = 140/265 (52%), Gaps = 6/265 (2%)
Query: 3 QFLVIIAMAMLSNIF-----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
FLV ++ ++ S+A T ++D +G ++ + PASLT
Sbjct: 18 IFLVAAFVSACASSGGSIDEAVYSVAPTTAKYAAIVVDEKSGKMLYGANVNELRYPASLT 77
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT Y++F + + + TPI IS+NA+ PPS K G ++ +D A+++L+VKSAN
Sbjct: 78 KMMTVYMLFEAMDQGRISRDTPIPISRNAARRPPSKLGLKAGQSIPVDTAIRVLVVKSAN 137
Query: 118 DIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
D+A A+ E L + F M ++ LG+S T F NA G+ +TA DMA LS
Sbjct: 138 DVATAVGEFLGGGSEARFADMMTAKARTLGMSRTTFKNASGLPDPDQVSTATDMARLSIA 197
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
++ +FP + YF + + G+ N A+ GADG+KTG+T ASGFN+ S
Sbjct: 198 LRRNFPHHYSYFGQTEVTVAGRTIKGHNKAMKMIPGADGLKTGYTRASGFNLATSVRHQG 257
Query: 237 QSLIAVILGALDRNTRNKVSASLLS 261
+S++ V++G + R+ L+S
Sbjct: 258 KSVVGVVMGEDKASIRDARMTQLMS 282
>gi|218896498|ref|YP_002444909.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
G9842]
gi|218543820|gb|ACK96214.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
G9842]
Length = 374
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 85/336 (25%), Positives = 133/336 (39%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ +G V+ P AS+
Sbjct: 1 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAES+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGNES-FKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK D K+
Sbjct: 292 KNSFSVPLTEEERKNVLLKVELDKSITLEDGVKVGK 327
>gi|228907200|ref|ZP_04071061.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
200]
gi|228852421|gb|EEM97214.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
200]
Length = 378
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 85/336 (25%), Positives = 133/336 (39%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ +G V+ P AS+
Sbjct: 5 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 64
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 65 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAES+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 120 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 179
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 180 YAMGNES-FKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHVYT 295
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K DK D K+
Sbjct: 296 KNSFSVPLTEEERKNVLLKVELDKSIALEDGVKVGK 331
>gi|268610236|ref|ZP_06143963.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens
FD-1]
Length = 386
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 66/344 (19%), Positives = 121/344 (35%), Gaps = 20/344 (5%)
Query: 1 MRQFLV-----IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ ++ I + + S + L+ +TG ++ AS
Sbjct: 1 MKRIIITALAPFILLGVSSERKVSAAERPEVSARGAVLISADTGEIVFSENFSEKLPMAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK+MT + L + +A S+ +G T+T +++ S
Sbjct: 61 TTKIMTTLLCLE-----SGDLYDEFVVDSDAIHVEGSSMGLVEGDTVTKYALCVGMLLPS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND A A A L + + F MN+ +K LGLS T+F+ G+ GH ++A DMA+L+
Sbjct: 116 GNDAANACAVKLAGSLENFAVMMNDKAKELGLSHTYFVTPSGLEGDGHGSSAYDMAMLAR 175
Query: 176 RIKTDFPQYMHYFQIKGL-----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + NTN + + G G+KTGFT +G +V+
Sbjct: 176 EALRNEIFREICSSENMEIEFGAPPYKRWLKNTNKLLSMYDGVYGVKTGFTDEAGRCLVS 235
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
+ + + LI V L D ++ GF + ++
Sbjct: 236 ACERDGKDLICVTLNDRDD---WNDHMAMYDYGFETAANVDIPVPDGYSVRLAGGESDTL 292
Query: 291 NISE--EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++S E T + + + +K +
Sbjct: 293 SVSPECEYVTVTSMSEDTDDFSFGIVAPPFVYAPVKKGNAVAEL 336
>gi|260892761|ref|YP_003238858.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4]
gi|260864902|gb|ACX52008.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ammonifex degensii KC4]
Length = 374
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 74/336 (22%), Positives = 128/336 (38%), Gaps = 19/336 (5%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+I +L + + L++ +G E PASLTK+MT +
Sbjct: 12 FLIFGCWLLGVVQVAWASPPEVTAEAAALMERQSGLFYYEKNATERRAPASLTKVMTCIL 71
Query: 65 VFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
A +T+S+ A+ + G + L +K ++ SAND VAI
Sbjct: 72 ALE-----MADPEEVVTVSRRAAAISMGLVIDLRPGEQIKLRELIKAALIHSANDATVAI 126
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE++ FV+ MN + LGL THF+N +G H++TA+D+A L+ +
Sbjct: 127 AEAVAGDHDTFVRWMNAKALLLGLEDTHFVNTNGYSHPEHWSTAKDLARLTRYALQNPTF 186
Query: 184 -----YMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ NTN G + G+KTG T A+G ++ASA G+Q
Sbjct: 187 ASLVATRQAVVRWEKPQRELPISNTNRLLHGGYPQVTGVKTGTTQAAGQCLIASARSGEQ 246
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNIS 293
+AV+L + + R + + +LLS G + + + L +
Sbjct: 247 EFVAVVLKSKN---RYRDAVALLSWGSKELKEVNLCDKGEYWTRLPVAEGRLGDVPLVAR 303
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
E + Q+ + + + +
Sbjct: 304 EGLSVLLPLGEPVEKQICLTRALRAPVYPGSPLGEV 339
>gi|307709107|ref|ZP_07645566.1| penicillin-binding protein 3 [Streptococcus mitis SK564]
gi|307620053|gb|EFN99170.1| penicillin-binding protein 3 [Streptococcus mitis SK564]
Length = 413
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 69/351 (19%), Positives = 137/351 (39%), Gaps = 31/351 (8%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ + ++ NTG ++ E P AS+TKL+T Y+V+ L+
Sbjct: 17 ASTVAAQDFNIAAKHAIAVEANTGKILYEKDATQPVEIASITKLLTVYLVYEALENGSIT 76
Query: 76 LTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L+TP+ IS + +++ + T++ L+ +V SAN A+A+AE + +EK
Sbjct: 77 LSTPVDISDYPYQLTTNSEASNVPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEK 136
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIK 178
FV M G+ +N G+ + +A D+AI++ +
Sbjct: 137 NFVDMMRAKLLEWGIKDATVVNTTGLNNETLGDNIYPGSNKDDENKLSAYDVAIVARNLI 196
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQ 234
+PQ + + G +TN+ + G DG+KTG T +G + V + ++
Sbjct: 197 KKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVE 256
Query: 235 GDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYII------KDFYQQN 284
+I V+L A + +R ++SL+ T RK +
Sbjct: 257 KGMRVITVVLNADHQDNNPYSRFTATSSLMDYISSTFTLRKVVQQGDAYQDSKVPVQDGK 316
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E++ ++ + ++ D ++ E T++ + +
Sbjct: 317 EDTVTAVAPEDIYLIERGGNQSSQSIQFTPDSKAIPAPLEAGTVVGHLTYE 367
>gi|255020661|ref|ZP_05292723.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
51756]
gi|254969897|gb|EET27397.1| D-alanyl-D-alanine carboxypeptidase [Acidithiobacillus caldus ATCC
51756]
Length = 386
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 63/250 (25%), Positives = 110/250 (44%), Gaps = 1/250 (0%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
LLD T V+ + + + P NP+ L KLMTAY++ + + +S A
Sbjct: 44 QAAVLLDVQTDQVLMDEHGNRPLNPSGLVKLMTAYLLLQAEHQGLVRPDQNVQVSDRAWH 103
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S + G +T+ + L++ ND A+ IA+++ + FV MN + +GL
Sbjct: 104 AQGSRMFIQPGLPVTVAQLERGLLIDGGNDAAIVIAQTVAGSVSGFVDLMNRDAAEMGLK 163
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
THF N G+ +TA D+A L+ + + P + N N G
Sbjct: 164 HTHFANPDGLPAPDQRSTALDVARLARILIENHPSVLQVAGQPKYTYNHITQYNYNPLAG 223
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
G +G+ G + +++ SA + +SL+AV+LGA R++ +++LL GF+
Sbjct: 224 E-KGINGLGVGLASSKHWDLAVSASRDGRSLVAVVLGAASRSSAGADASALLHYGFHGWQ 282
Query: 269 DRKKINYIIK 278
+
Sbjct: 283 QHTVYAAGAR 292
>gi|255654539|ref|ZP_05399948.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-23m63]
Length = 409
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 78/352 (22%), Positives = 147/352 (41%), Gaps = 22/352 (6%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++Q ++ + ++ F F N L+D T ++ E D ASL+K
Sbjct: 5 IKQLTILTLIFIFITPGFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSK 64
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + + + + T + I K+ + S K G ++L ++ L++ S ND
Sbjct: 65 MMTFLLAIEAIDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGND 124
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----------GHYTTAR 168
A+AIA+ + KTEK FV MN ++ +G+ T++ N +G+ + + +TA
Sbjct: 125 AALAIAKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENISTAH 184
Query: 169 DMAIL---SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
D+ L + + + Q+ K + NTN + + G DG+KTG+T +G
Sbjct: 185 DIVTLGKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAG 244
Query: 226 FNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+ + S + + LI V+LG ++ R SASLL G N +K +
Sbjct: 245 YCLAFSMMIPKDAKNERNHRLIGVVLGDGNKKNRISSSASLLKYGKDNFHSKKIAHKGDI 304
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ I +V +++ N + ++ K ++
Sbjct: 305 IETPCVDGIDDFKIKVKVDKDLYGVVSDNENINPKVVFKNMNYPIHKGDIVG 356
>gi|16079376|ref|NP_390200.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
subtilis str. 168]
gi|221310236|ref|ZP_03592083.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
[Bacillus subtilis subsp. subtilis str. 168]
gi|221314560|ref|ZP_03596365.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
[Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221319482|ref|ZP_03600776.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
[Bacillus subtilis subsp. subtilis str. JH642]
gi|221323758|ref|ZP_03605052.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
[Bacillus subtilis subsp. subtilis str. SMY]
gi|321311791|ref|YP_004204078.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
gi|461914|sp|P35150|DACB_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacB;
Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
Full=Penicillin-binding protein 5*; Short=PBP-5*; Flags:
Precursor
gi|410134|gb|AAA67490.1| penicillin-binding protein [Bacillus subtilis subsp. subtilis str.
168]
gi|2634754|emb|CAB14251.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
[Bacillus subtilis subsp. subtilis str. 168]
gi|320018065|gb|ADV93051.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis BSn5]
Length = 382
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 70/336 (20%), Positives = 127/336 (37%), Gaps = 18/336 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR F + + M+S + ++ A ++D +G V+ AS
Sbjct: 1 MRIFKKAVFVIMISFLIATVNVNTAHAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MTA + K + +T+S NA S +G + L + + L+++S
Sbjct: 61 ITKIMTAVLAIESGK-----MDQTVTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND AVAIAE + + FV MN ++ LG+ T F N HG+ H ++ + +
Sbjct: 116 GNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMKNTRFQNPHGLDDHENHYSTAYDMAILT 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ Y K + + + N + + G KTG+T + +V++A
Sbjct: 176 KYAMKLKDYQKISGTKIYKAETMESVWKNKNKLLTMLYPYSTGGKTGYTKLAKRTLVSTA 235
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LIAV + + + + F + + I
Sbjct: 236 SKDGIDLIAVTINDPND---WDDHMKMFNYVFEHYQTYLIAKKGDIPKLKGTFYESKAFI 292
Query: 293 SEEVC--TTQKEIINYNTQMKEAKDKESHFIDFEKI 326
++ T++E N K K++ D KI
Sbjct: 293 KRDITYLLTEEEKENVKINTTLLKPKKAWEKDASKI 328
>gi|332524065|ref|ZP_08400317.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus
str. Jelinkova 176]
gi|332315329|gb|EGJ28314.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus
str. Jelinkova 176]
Length = 424
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 78/365 (21%), Positives = 143/365 (39%), Gaps = 32/365 (8%)
Query: 1 MRQ--FLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ +L++I + +LS + F A + ++ +TG ++ + D ASL
Sbjct: 21 MKKPIYLILICIFILSPLSHPVFADQALNLRAKEAIAVEYSTGKILYQKNSDRKVPIASL 80
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIV 113
TK+MT Y+ + + + +SK A+ P ++ ++ ++ + +V
Sbjct: 81 TKIMTIYLTLKEINSGRLKWNDSVEMSKYATALANNPDISNPPLYKNSYSVKELVDSSMV 140
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------------- 160
S+N A+A+AE + +E KFV M N + G++ +NA G+
Sbjct: 141 VSSNSSAIALAEKIAGSEAKFVDKMKNQLETWGITDYQLVNASGLNNSMLNGHIYPGSSK 200
Query: 161 -HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADG 215
+ +A+ +AI+S + D+P+ + L N+N + G DG
Sbjct: 201 KSENKLSAKSIAIVSRHLIKDYPEILTISSQNQLYWGNDILTNSNHLLPGNIMGRKGVDG 260
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKT--D 269
+KTG T +G + +A+Q +I VIL A D N R + L F +
Sbjct: 261 LKTGTTTKAGQTYIGTAVQDKMRVIVVILNATDASKDSNARFVEANKLFDYSFQHYQKAT 320
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ-MKEAKDKESHFIDFEKITL 328
K N + + T + +N T K +K+ K
Sbjct: 321 IPKGKPFSTKLAISNAKQKTIAFKSKYDFTVIQPVNDQTIHYKIVPNKQHTVAPITKDEQ 380
Query: 329 LKNKI 333
L I
Sbjct: 381 LGKII 385
>gi|330820568|ref|YP_004349430.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia gladioli
BSR3]
gi|327372563|gb|AEA63918.1| Serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia gladioli
BSR3]
Length = 306
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 80/257 (31%), Positives = 126/257 (49%), Gaps = 9/257 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + ++D +G V+ E+ D PASLTKLMTAYVV L+ L
Sbjct: 34 AVGADSAIHAAAWLVVDGESGRVLGEHDADAERQPASLTKLMTAYVVLDALRRGALRLDE 93
Query: 79 PITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ + G ++T+++ + LIV SAND A+ +A + + F
Sbjct: 94 TLRVDGADLADLGQDEARMYLVAGRSVTVEDLVDGLIVASANDAAMVLARRVGGSRAGFE 153
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
Q MN+T++ LG++ TH+ G+ G+++TARD+A L+ R+ DFP Y Y +
Sbjct: 154 QRMNDTARRLGMTHTHYTTPSGITTPGNHSTARDLATLARRLTADFPVYYRYSARQQFAY 213
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD------QSLIAVILGALDR 249
G N NW +G+ G DG+KTG T A+G+ IVA+A + + + AV+LGA
Sbjct: 214 GGFHKRNKNWLLGSAPGVDGLKTGHTQAAGYCIVATARRRQAAPPMARRVFAVVLGAPSA 273
Query: 250 NTRNKVSASLLSMGFYN 266
+ R LL +
Sbjct: 274 SARIDAGRRLLDEAYAQ 290
>gi|254974115|ref|ZP_05270587.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-66c26]
gi|255091514|ref|ZP_05320992.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CIP
107932]
gi|255313242|ref|ZP_05354825.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-76w55]
gi|255515932|ref|ZP_05383608.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-97b34]
gi|255649025|ref|ZP_05395927.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-37x79]
gi|306519141|ref|ZP_07405488.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-32g58]
Length = 409
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 75/347 (21%), Positives = 144/347 (41%), Gaps = 21/347 (6%)
Query: 5 LVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + ++ +F F N L+D T ++ E D ASL+K+MT
Sbjct: 10 ILALIFIFITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMMTFL 69
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + + + T + I K+ + S K G ++L ++ L++ S ND A+AI
Sbjct: 70 LAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAAIAI 129
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----------GHYTTARDMAIL 173
A+ + KTEK FV MN ++ +G+ T++ N +G+ + + +TA D+ L
Sbjct: 130 AKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHDIVTL 189
Query: 174 SWRIKTDFPQYMHYFQIKG---LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + + K + NTN + + G DG+KTG+T +G+ +
Sbjct: 190 GKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGYCLAF 249
Query: 231 SAIQ-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
S + + LI V+LG ++ R SA+LL G N +K +
Sbjct: 250 SMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYGKDNFHSKKIAHKGDIIETPC 309
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ I+ +V +++ N + ++ K ++
Sbjct: 310 VDGIDDFKITVKVDKDLYGVVSDNENINPKVVFKNMNYPIHKGDIVG 356
>gi|255099621|ref|ZP_05328598.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-63q42]
gi|328887546|emb|CAJ67349.2| D-alanyl-D-alanine carboxypeptidase, S11 peptidase family
[Clostridium difficile]
Length = 409
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 75/347 (21%), Positives = 144/347 (41%), Gaps = 21/347 (6%)
Query: 5 LVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + ++ +F F N L+D T ++ E D ASL+K+MT
Sbjct: 10 ILALIFIFITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMMTFL 69
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + + + T + I K+ + S K G ++L ++ L++ S ND A+AI
Sbjct: 70 LAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAAIAI 129
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----------GHYTTARDMAIL 173
A+ + KTEK FV MN ++ +G+ T++ N +G+ + + +TA D+ L
Sbjct: 130 AKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHDIVTL 189
Query: 174 SWRIKTDFPQYMHYFQIKG---LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + + K + NTN + + G DG+KTG+T +G+ +
Sbjct: 190 GKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGYCLAF 249
Query: 231 SAIQ-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
S + + LI V+LG ++ R SA+LL G N +K +
Sbjct: 250 SMMVPKDAKNERNHRLIGVVLGDGNKKNRISSSATLLKYGKDNFHSKKIAHKGDIIETPC 309
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ I+ +V +++ N + ++ K ++
Sbjct: 310 VDGIDDFKITVKVDKDLYGVVSDNENINPKVVFKNMNYPIHKGDIVG 356
>gi|190891838|ref|YP_001978380.1| D-alanyl-D-alanine carboxypeptidase [Rhizobium etli CIAT 652]
gi|190697117|gb|ACE91202.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli CIAT
652]
Length = 360
Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats.
Identities = 68/308 (22%), Positives = 127/308 (41%), Gaps = 8/308 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+++ +TG V+ D ++PASL KLMT +VF + + + L T +S+ A +
Sbjct: 1 MIEASTGTVLLAKNEDEGFSPASLAKLMTMDLVFEAVTKGQITLDTEYPVSEYAWRTGGA 60
Query: 93 -----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
S + +++ +K + ++ AND + +AE + +E++F + M ++ +G+
Sbjct: 61 PSRTATMFAALKSRVRVEDLIKGIAIQGANDSCIILAEGMAGSEQQFAESMTRRAREIGM 120
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
F N+ G+ TAR+M L+ ++ +P YF E N N +
Sbjct: 121 EKAVFGNSTGLPGGKSKVTAREMVTLAAALQQSYPNLYPYFAQPDFEWNRIFQRNRNPLL 180
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
G LGADG+ TGFT G++IVAS + + L + G R + + +L G
Sbjct: 181 GLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGLTAF 240
Query: 268 TDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
+R+ I + V I++ + + N + +
Sbjct: 241 ENRQIFAEHEVIGAASVYGGTARTVDLIAKAPVSVYIPVSNPDRLSARIVYHWPLTAPVQ 300
Query: 325 KITLLKNK 332
Sbjct: 301 PDYQAGTL 308
>gi|28211195|ref|NP_782139.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
gi|28203635|gb|AAO36076.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
Length = 374
Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats.
Identities = 81/343 (23%), Positives = 145/343 (42%), Gaps = 24/343 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE----------TNKLPYYTLLDTNTGHVIAENYPDHPW 51
+ L I + NI + +A Y LD N+ V+A +
Sbjct: 5 KILLYFICFIITININTYSVLANQHLNKKENKLNVNARAYIALDANSKVVLAGRNSEVIM 64
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS TK++TA V + L + IS AS S + +KKG ++L L L
Sbjct: 65 PMASTTKILTALVTLKY-----GDLDKMVEISPKASSIRGSVAGYKKGEEISLKELLFGL 119
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+++S ND A+AIAE + +E++FV+ MN + +LGL +HF + HG+ HY+T D+A
Sbjct: 120 MLRSGNDAAIAIAEGVAGSEEEFVRLMNEYAASLGLIDSHFCSPHGLDSAEHYSTVYDLA 179
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGK----KYPNTNWAVGTFLGADGMKTGFTCASGFN 227
IL+ P + K + Y N N + A G+KTG+T +G
Sbjct: 180 ILTAES-KKHPLFHEIVSTKDITKDKYSFSRDYHNINKILWQLPNATGVKTGYTGGAGKC 238
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+V+S + +I V+L R K + + + N +K +
Sbjct: 239 LVSSVDISGREVIIVVLDCPG---RWKETTKVNNYVKKNYEYKKLHSKGEVVAKAPKDKK 295
Query: 288 EVPNI-SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + E++ ++ +Y+ ++ + + + +K+ +
Sbjct: 296 NIDLVCKEDIIIPTEKGTDYSVKINVPNEINHNIYEGDKVGSI 338
>gi|150391165|ref|YP_001321214.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
metalliredigens QYMF]
gi|149951027|gb|ABR49555.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alkaliphilus
metalliredigens QYMF]
Length = 257
Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 5/244 (2%)
Query: 27 KLPYYTLLDTN-TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L + V+ + + AS+TKLMT V+ + K T + +S
Sbjct: 9 NARAAILFKASPNNKVLFQKHATKRLPIASITKLMTMLVLLDGIDAGKIKWTDKVEMSPA 68
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A+ S K G + + + K +I+ SAND A+A+AE L T F+ MN +K L
Sbjct: 69 AASLYGSKIHLKPGEKLPVGDMFKSMIIASANDAAIALAEHLSGTMDNFIDKMNQKAKTL 128
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD----FPQYMHYFQIKGLEIKGKKYP 201
GL +HF+N+HG+ + HY++A D+ + + Y I+ + + +K
Sbjct: 129 GLKNSHFVNSHGLFEDNHYSSAIDIVKMVSMALRREEILKYSRLKYDYIRKEDNQLQKLV 188
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
NTN +GT DG+KTG+T +G + A+A++ + LIAV+LG + R+K +L+
Sbjct: 189 NTNKLIGTIPEVDGLKTGYTPLAGCCLAATALKDNVRLIAVVLGEPRKAVRDKEVIEMLN 248
Query: 262 MGFY 265
GF
Sbjct: 249 YGFK 252
>gi|296332253|ref|ZP_06874715.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674955|ref|YP_003866627.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150567|gb|EFG91454.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413199|gb|ADM38318.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 382
Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 68/328 (20%), Positives = 123/328 (37%), Gaps = 16/328 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR F + M M+S + ++ A ++D +G V+ AS
Sbjct: 1 MRIFKKAVFMVMISFLIANVNVNTAHAAIDVSAKSAIVIDGASGRVLFAKDEHEKRRIAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MTA + K + +T+S NA S +G + L + + L+++S
Sbjct: 61 ITKIMTAVLAIESGK-----MDETVTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLMLRS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND AVAIAE + + FV MN ++ LG+ T F N HG+ H ++ + L
Sbjct: 116 GNDAAVAIAEHVGGSLDGFVYMMNQKAEQLGMENTRFQNPHGLDDHENHYSTAYDMALLT 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGT-FLGADGMKTGFTCASGFNIVASA 232
+ Y K + + + + N N + + + G KTG+T + +V++A
Sbjct: 176 KYAMKLKDYQKISGTKIYKAETMESVWKNKNKLLTMLYRYSTGGKTGYTKLAKRTLVSTA 235
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LIAV + D + + F + + I
Sbjct: 236 SKDGIDLIAVTINDPDD---WDDHMKMFNYVFDHYQTYLIAKKGDIPKLKGTFYESKAFI 292
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHF 320
++ E + ++ K
Sbjct: 293 KRDITYLLTEEEKEDVNIQTTLLKPKKT 320
>gi|291086840|ref|ZP_06344603.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
gi|291077111|gb|EFE14475.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
Length = 516
Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 65/341 (19%), Positives = 122/341 (35%), Gaps = 35/341 (10%)
Query: 17 FPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
P + E L+D TG ++ E AS TK+MT +
Sbjct: 140 LPAQAKPEEDFKLYAQSAVLMDAGTGRILYEKDGKTKRPMASTTKIMTCILALEE----- 194
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+T+S A+ P ++G L + L L+++S ND AVA+AE + + ++
Sbjct: 195 GSPEDLVTVSSYAASMPDVQLNIREGEQYYLKDLLYSLMLESHNDTAVAVAEHIAGSVEE 254
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHG------HYTTARDMAILSWRIKTDFPQYMHY 187
F MN ++++G + T F+ +G+ H TTA D+A + T P+ +
Sbjct: 255 FAVLMNQKARDIGCTDTWFVTPNGLDGADGPQQTPHSTTAEDLARIMSYCITQSPKREEF 314
Query: 188 FQIKGLEI---------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
++ + N N + A KTGFT A+G+ V + ++
Sbjct: 315 IELTRTASHSFADREGKRSFYCANHNAFLTMMPEALTGKTGFTGAAGYCYVGAVQDEGRT 374
Query: 239 LIAVILGA---LDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---------DFYQQNLS 286
+ +LG + + +L S R+ + L
Sbjct: 375 FVVSLLGCGWPPHKTYKWSDMKTLSSYALREYGWREVFESGKTFPDAAVKDGVAEKTGLV 434
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
VP + + +E + + + + E+ +
Sbjct: 435 LAVPKEEQTLRVLMREGEEADIRYRYPSELEAPVAAGTPVG 475
>gi|153814792|ref|ZP_01967460.1| hypothetical protein RUMTOR_01007 [Ruminococcus torques ATCC 27756]
gi|145847823|gb|EDK24741.1| hypothetical protein RUMTOR_01007 [Ruminococcus torques ATCC 27756]
Length = 426
Score = 153 bits (385), Expect = 4e-35, Method: Composition-based stats.
Identities = 73/345 (21%), Positives = 130/345 (37%), Gaps = 32/345 (9%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
L+D TG ++ D AS TK+MT + L+
Sbjct: 52 SIKVKPSDLYARSAVLMDAETGRILFGKNKDEQMPMASTTKIMTCILALEN-----GNLS 106
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+S AS P +G T L + L L+++S ND AVAIAE + KF
Sbjct: 107 DKAEVSSVASAQPKVKLGMTQGQTFYLKDLLYSLMLESHNDSAVAIAECIAGNVDKFADM 166
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN + LG ++T+F+ +G+ H+TTA ++A + + PQ + +I
Sbjct: 167 MNKKASQLGCNSTYFITPNGLDGQDENGIHHTTAEELARIMRYCIMESPQKEKFLEITRA 226
Query: 194 EI---------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ K N N + GA KTGFT +G+ V + + ++LI +L
Sbjct: 227 DAYTFTDCKGEKSYSCVNHNTFLKMMDGALSGKTGFTQDAGYCYVGALRKDGKTLIVALL 286
Query: 245 GALDRNT---RNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVC 297
N + + L++ G N ++ KI+ K + + + P +++
Sbjct: 287 ACGWPNNKGYKWSDTKKLMTYGMENYCYKEISPDKIDRTEKIYIKNGYTGGFPKKGKDLL 346
Query: 298 TTQKEIINYNTQMKEAKDKESHF-------IDFEKITLLKNKITK 335
+ + + E +K T++ + +
Sbjct: 347 EVEISGESKKILVGADDKDEIEIKIKKEICAPIKKGTVIGEIVYR 391
>gi|307942276|ref|ZP_07657627.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp.
TrichSKD4]
gi|307774562|gb|EFO33772.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Roseibium sp.
TrichSKD4]
Length = 389
Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 74/336 (22%), Positives = 129/336 (38%), Gaps = 8/336 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L I + P L++ TG V+ + + PA L+++MTA
Sbjct: 12 LCIALFGCCVAAPITSAETLDTAAPMAFLMEVKTGSVLYAKAAEKTFQPAGLSRIMTAAT 71
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDI 119
VF LK+ + +S++A + + GS++++ + LK L+V A+D
Sbjct: 72 VFKALKDVEVTEAQECKVSEHAWRTGGAPAGGTTMFAELGSSISVLDLLKGLLVHQAHDA 131
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ +AE L EK F M ++ +GL+ + F++ G G TT DMA L + +
Sbjct: 132 AIILAECLDGDEKTFADRMTAYAREIGLTNSQFLSPAGFDVDGAATTVEDMATLGFHMLQ 191
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+FP F + N N +G G DG+ TG + GF +AS + + +
Sbjct: 192 EFPDRYPLFALNEFTWNDIYQRNRNPLIGEMRGLDGLGTGSSEKGGFASLASLNRDGRRV 251
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISEEV 296
IAV+ G+ R K ++ + + R+ + + +EVP I+E
Sbjct: 252 IAVVAGSPSAKARIKALKQVVDGAWDYFSVRQLYSKGDVVAMARVFGGIESEVPLIAERN 311
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
E +
Sbjct: 312 IAVLLPKSGALGYKLRVTYSGPVVAPVEPGKRVGKL 347
>gi|289167763|ref|YP_003446032.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3
[Streptococcus mitis B6]
gi|288907330|emb|CBJ22167.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 3
[Streptococcus mitis B6]
Length = 413
Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 68/351 (19%), Positives = 137/351 (39%), Gaps = 31/351 (8%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ + ++ NTG ++ E P AS+TKL+T Y+V+ L+
Sbjct: 17 ASTVAAQDFNITAKHAIAVEANTGKILYEKEATQPVEIASITKLLTVYLVYEALENGSIT 76
Query: 76 LTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L+TP+ IS + +++ + T++ L+ +V SAN A+A+AE + +EK
Sbjct: 77 LSTPVDISDYPYKLTTNSEASNVPMEARNYTVEQLLEATLVSSANSAAIALAEKIAGSEK 136
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIK 178
FV M G+ +N G+ + +A D+AI++ +
Sbjct: 137 DFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDDENKLSAYDVAIVARNLI 196
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQ 234
+PQ + + G +TN+ + G DG+KTG T +G + V + ++
Sbjct: 197 KKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVE 256
Query: 235 GDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYII------KDFYQQN 284
+I V+L A + R ++SL+ T RK +
Sbjct: 257 KGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQKGDAYQDSKAPVQDGK 316
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ +++ ++ + ++ D ++ E T++ + +
Sbjct: 317 ENMVTAVAKDDISLIERVGSQSSQSVQFTPDSKAIPAPLEAGTVVGHLTYE 367
>gi|312127682|ref|YP_003992556.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1
[Caldicellulosiruptor hydrothermalis 108]
gi|311777701|gb|ADQ07187.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Caldicellulosiruptor hydrothermalis 108]
Length = 451
Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 77/349 (22%), Positives = 142/349 (40%), Gaps = 27/349 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F ++ + + + L++ +TG ++ E P+ PAS TK++TA
Sbjct: 19 FAILFTYPLYTYSQQESTDKLGLSAKSAILVEAHTGQILFEKNPNLICFPASTTKVLTAL 78
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
V S+ L +S A+ P S+ G T++ + L +++ SAND A
Sbjct: 79 VAISYEH----DLNKIFKVSSKATMIEPGSSSYYLNPGETISFQDLLYAMLLISANDAAN 134
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
IAE++ + +FV+ MN +K++G +HF+N +G+ HYTTA D+++++ + +
Sbjct: 135 VIAENIAGSIPEFVEKMNEYAKSIGAENSHFVNPNGLHSPQHYTTAYDLSLIARQAYQNE 194
Query: 182 P--------QYMHYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNI 228
+Y + + + N N + + A G+KTG+T + +
Sbjct: 195 ILRKIFSTVEYRITTASMHKKPEWQIIYNINKLLRKNSKYYYPYATGIKTGYTAQAKRCL 254
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ASA + D LIAVIL + L + GF N K +
Sbjct: 255 IASAKKDDIELIAVIL---SSEDAFSDAIKLFNYGFNNFKREKLFSENQIVGKVLIDKTN 311
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKD-----KESHFIDFEKITLLKNK 332
+ + T + N + + + I K T++ N
Sbjct: 312 HKWLDGYLKTPVYVLQNVYSPAESDLTYTVDFLKDLKIPIYKDTVIGNV 360
>gi|229084569|ref|ZP_04216839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
gi|228698719|gb|EEL51434.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
Length = 373
Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats.
Identities = 87/343 (25%), Positives = 146/343 (42%), Gaps = 16/343 (4%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
MR+ ++VI + M ++I P + A+ LL+ ++G V+ P AS+T
Sbjct: 1 MRRTWIVIALIVMCASIIPIHTYAQMNDVSARNAILLEEHSGRVLYGKSEHEPQKIASIT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MTA + + ++A+ IS A S K G+ + L++ + L+++S N
Sbjct: 61 KIMTALLAAESGRMREAVP-----ISDKAVRVEGSAIYLKPGNKVPLEDLVYGLLLRSGN 115
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWR 176
D A AIAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 DAAQAIAENVGGSIEGFVYMMNEKAKQIGMEDTHFSNPHGLDGDGTHYSSAYDMALLTRY 175
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAI 233
+ + F K + K YP N + A G KTGFT +G +V +A
Sbjct: 176 AMGN-ETFRKIFGTKTYQSKAWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 234
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ LI V L A + L + GF K + ++
Sbjct: 235 KDGLDLIVVTLNASND---WDDHMYLFNQGFKQYELTKVLGQGALSGLKEKKYINHVYTK 291
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ +K DK + + EK+ + K+
Sbjct: 292 NDFSVPLTVGERKEVLLKVELDKNAKLKNGEKVGKTIIYVGKE 334
>gi|317128528|ref|YP_004094810.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
cellulosilyticus DSM 2522]
gi|315473476|gb|ADU30079.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
cellulosilyticus DSM 2522]
Length = 377
Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats.
Identities = 71/317 (22%), Positives = 127/317 (40%), Gaps = 16/317 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSI--AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++ + I ++ L + L++ +G V+ E AS+TK+
Sbjct: 3 KKIIAFILISTLFTDITASAATYPGNVSARGAILMEQESGRVLYEKEAHTQMRIASITKI 62
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTA + + L +T+S NA S+ + L + + L+++S ND
Sbjct: 63 MTAILAIESGE-----LDEWVTVSSNAEGTEGSSIYLVAEEEIQLRDLVYGLMLRSGNDS 117
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIK 178
AVAIAE + + + FV MN ++ LG++ T F N HG+ H HY+TA DMA+L+
Sbjct: 118 AVAIAEHVGGSLEGFVYMMNEKAQELGMTRTVFSNPHGLDDHEEHYSTAYDMALLTRYAM 177
Query: 179 TDFPQY----MHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAI 233
+ ++ K + + + N N + + + G KTG+T + +V++A
Sbjct: 178 DNEEYKEIAGTKSYRSKNKDDHYRVFNNKNRLLTQLYRNSTGGKTGYTKRAKRTLVSTAE 237
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ D LIAV + A D S+ F ++ + N
Sbjct: 238 KEDVELIAVTINAPDD---WNDHISMFEWAFSTFNLTTIVSDGLLTNINDEYYRNKVNAE 294
Query: 294 EEVCTTQKEIINYNTQM 310
E ++
Sbjct: 295 YSFEYPVAENEEIEKKI 311
>gi|294673565|ref|YP_003574181.1| serine-type D-Ala-D-Ala carboxypeptidase [Prevotella ruminicola 23]
gi|294471981|gb|ADE81370.1| serine-type D-Ala-D-Ala carboxypeptidase [Prevotella ruminicola 23]
Length = 280
Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats.
Identities = 62/245 (25%), Positives = 114/245 (46%), Gaps = 11/245 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + L+D +TG VI+E AS+TK+MTA + L+ I I++
Sbjct: 31 SLTADAWMLVDDSTGIVISEKCGFERRYMASITKMMTALIALEK-----GNLSDSIDITE 85
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ S + G + + + +++ S ND A A+A+ + +F MN ++
Sbjct: 86 DVFINRDSR--VRLGQGYVMLDLIYEMMMISDNDAAYALAKHVGGDTLRFYDLMNQKAQY 143
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP----QYMHYFQIKGLEIKGKKY 200
LG+ +THF N +G+ ++++A D+ L+ D + + +
Sbjct: 144 LGMDSTHFANPNGMPNDNNFSSAADLVKLARYAMRDTMFASIVGTAEKAVPLTDGRHMDC 203
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N+N + T+ G G+KTG+T +G+ + +SA + +L V+L + TR SA+LL
Sbjct: 204 RNSNALLHTYEGCIGIKTGYTRQAGYCLASSATRNGHTLYLVLLNSRRHATRFTESAALL 263
Query: 261 SMGFY 265
GF
Sbjct: 264 DYGFR 268
>gi|229166411|ref|ZP_04294167.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
gi|228616985|gb|EEK74054.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
Length = 382
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 84/336 (25%), Positives = 134/336 (39%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ +G V+ P AS+
Sbjct: 9 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQGSGRVLYGKAEHEPQKIASI 68
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K + +S A S K G + L++ + L+++S
Sbjct: 69 TKIMTALLAAESGKMK-----EMVAVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 124 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 183
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 184 YAMGN-ETFKGIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 242
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 243 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERYKQAKVLGQGALAEINEKKYANHVYT 299
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + D KI
Sbjct: 300 KNSFSVPLTEEERKSVLLKVELDKSAKLTDGVKIGK 335
>gi|291540307|emb|CBL13418.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4]
Length = 299
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 67/285 (23%), Positives = 108/285 (37%), Gaps = 20/285 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L+ +M + + P +++ +TG V+ + PAS+TK+MT
Sbjct: 2 ILLTGSMCIPVYAAEYWPEGPEVVSPNVIVMEASTGTVLYDCDSLEAHYPASITKIMTTL 61
Query: 64 VVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ L +T S S G MT++ L +++ SAN+ A A
Sbjct: 62 IALENSD-----LNDIVTFSDAAIDNTEGSGIARDYGEQMTMEQCLYAVMLASANECAYA 116
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE + T + FV MN +K LG THF N HG+ HYT DMA+++ +
Sbjct: 117 VAEHVGGTIENFVAMMNEKAKELGCQNTHFANPHGLHDENHYTCCYDMALIARAAYQNET 176
Query: 183 QY------MHYFQIKGLEIKGKKYPNTNWAVGT-------FLGADGMKTGFTCASGFNIV 229
+ + N N + + G G KTG+T A+ +V
Sbjct: 177 FRIIVGTARYTIPPTNKHAEQTDLQNHNEMLYPFQTNKYVYDGCTGGKTGYTNAANSTLV 236
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
A + +LI V++ N S +L F N
Sbjct: 237 TYAERDGMTLICVVMNTQSPNQ-WLDSRNLFDYCFDNFQLFNIAE 280
>gi|260437075|ref|ZP_05790891.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
DSM 2876]
gi|292810384|gb|EFF69589.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
DSM 2876]
Length = 396
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 76/371 (20%), Positives = 142/371 (38%), Gaps = 41/371 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET-NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ L +I +A++ L+D ++G ++ + AS TK+
Sbjct: 1 MKKILAVIIIAVVMCQSVTKGEEPENLYARAAILIDADSGRILYGKNENDVMPMASTTKI 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT V + + +T S A++ P KG TL+ L L++++S ND+
Sbjct: 61 MTLLVALKY-----GNPSDRVTFSSYAAKEPDVQLNALKGEQYTLNELLYLMMLRSYNDV 115
Query: 120 AVAIAES-----------------LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
A+ +AE + K+F+ MN + LGLS T+F+ +G+
Sbjct: 116 AMMVAEYVGGVLNGDTSPNNTTEESKEDVKRFIDEMNGYAVKLGLSDTYFVTPNGLDGED 175
Query: 163 ----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK------KYPNTNWAVGTFLG 212
H TTA ++A+++ + + K + + N N +
Sbjct: 176 EGRIHSTTAYELALIAREAL-KSEEVIKICTTKSFSYREQNGKRSGTVTNGNRFLDINKN 234
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNKTD 269
A GMKTGFT +G+ V + D++ I+V+LG ++N + + L+S G N
Sbjct: 235 AIGMKTGFTGKAGYCFVGATKVDDRTFISVVLGCGWPPNKNYKWADTGKLMSYGRDNYFY 294
Query: 270 RKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
R + I EV + + + ++ E+
Sbjct: 295 RNIFEKTYDYKEIKVENGLQESVGTYIPFEVNRLLSDEDEVDVIYEIISKAKAPVKKDEQ 354
Query: 326 ITLLKNKITKK 336
+ ++ I K
Sbjct: 355 VGKVRIYINGK 365
>gi|52080833|ref|YP_079624.1| D-alanyl-D-alanine carboxypeptidase [Bacillus licheniformis ATCC
14580]
gi|52786204|ref|YP_092033.1| DacB [Bacillus licheniformis ATCC 14580]
gi|319645208|ref|ZP_07999441.1| DacB protein [Bacillus sp. BT1B_CT2]
gi|52004044|gb|AAU23986.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
[Bacillus licheniformis ATCC 14580]
gi|52348706|gb|AAU41340.1| DacB [Bacillus licheniformis ATCC 14580]
gi|317393017|gb|EFV73811.1| DacB protein [Bacillus sp. BT1B_CT2]
Length = 384
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 76/345 (22%), Positives = 135/345 (39%), Gaps = 19/345 (5%)
Query: 1 MRQFL------VIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
MR FL ++I + S+ + ++D +G V+
Sbjct: 1 MRFFLKQAAAAIMICSLLCSSYETAQAQPSLHISAKSAIVMDGQSGRVLFAKDEHEKRRI 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS+TK+MTA + K L +T+S A S+ G + L + + L++
Sbjct: 61 ASITKIMTAILAVESGK-----LDETVTVSDRAVRTEGSSIYLTSGQKVKLKDLVYGLML 115
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAI 172
+S ND AVAIAE + + + FV MN + LG+ T F N HG+ H HY++A DMA+
Sbjct: 116 RSGNDAAVAIAEHVGGSLEGFVYMMNQKAAELGMENTLFRNPHGLDDHPDHYSSAYDMAL 175
Query: 173 LSWRIKTDFPQYMHYFQIKGL-EIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVA 230
L+ T+ + E + N N G + + G KTG+T + +V+
Sbjct: 176 LTKYAMTNETYKKIAGTKRYKAETMQGIWRNKNKLLTGLYKYSTGGKTGYTKLAKRTLVS 235
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
++ + LIAV + A D ++ + F + + +
Sbjct: 236 TSSKDGTDLIAVTINAPDD---WNDHMNMFNYVFGHYKTYIIAKKGEIPKLKDSFYGNKA 292
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
I +V E + ++ + E + + + I +
Sbjct: 293 FIKRDVTYLLNEEEKEDVKVDI-ELLEPKKSWRKNKKEIPDIIGE 336
>gi|206967983|ref|ZP_03228939.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH1134]
gi|206736903|gb|EDZ54050.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH1134]
Length = 374
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 85/336 (25%), Positives = 132/336 (39%), Gaps = 17/336 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + M+ +++ P + A L++ +G V+ P AS+
Sbjct: 1 MRRICVIITLLMMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 61 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAES+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 NDAAQVIAESVGGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 175
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 176 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 234
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 235 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYANHVYT 291
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
E N +K K D K+
Sbjct: 292 KNSFSVPLTEEEKKNVVLKVELHKSIKLTDGVKVGK 327
>gi|58698116|ref|ZP_00373039.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58535362|gb|EAL59438.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 310
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 71/280 (25%), Positives = 130/280 (46%), Gaps = 5/280 (1%)
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT Y+ F +LK + +S+ A E S+ K+G +T+ L+ + + S ND
Sbjct: 1 MTLYIAFDYLKAGIIHMEDKFRVSRKAWERKGSSMFLKEGQFVTVRELLEGITIVSGNDA 60
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+ +AE + +E+ FV MN ++NL L+ +HF+N+ G H+ +A+D+ +L+ RI T
Sbjct: 61 CITLAEGIAGSEENFVAEMNEVAQNLNLNDSHFVNSSGWPDGDHFMSAKDLVMLAKRIFT 120
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
DFP+Y F + L N N + +G DG+KTG+T A G+ IVASA + D+ +
Sbjct: 121 DFPEYYDLFSEQYLTYNEIVQKNKNLLLFHDIGVDGLKTGYTNAGGYGIVASAKRNDRRI 180
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI----IKDFYQQNLSNEVPNISEE 295
AV+ G R + + L+ + +K + ++ +
Sbjct: 181 FAVVNGLNTEKERIEEAKRLIQYSLNHFNTKKIFAQDSVVEEVNVLYGKDKKVPITVAND 240
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
V T ++ +++ + K+ +K + +
Sbjct: 241 VTITYNRKLHDQIKVRI-EYKDMIPAPIKKGQEVGKVFVE 279
>gi|213019298|ref|ZP_03335105.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
gi|212995407|gb|EEB56048.1| D-alanyl-D-alanine carboxypeptidase [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
Length = 310
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 70/280 (25%), Positives = 128/280 (45%), Gaps = 5/280 (1%)
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT YV F +LK + +S+ A E S+ K+G +T+ L+ + + S ND
Sbjct: 1 MTLYVAFDYLKAGIIKMEDKFRVSRKAWERKGSSMFLKEGQFVTVKELLEGITIASGNDA 60
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+A+AE + +E+ FV MN +++L L+ +HF+N+ G H+ +A+D+ L+ RI T
Sbjct: 61 CIALAEGIAGSEENFVAEMNEVAQDLNLNDSHFVNSSGWPDENHFMSAKDLVTLAKRIFT 120
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
DFP+Y F + L N N + +G DG+KTG T A G+ I+ SA + D+ +
Sbjct: 121 DFPEYYDLFSEQYLTYNDIVQKNKNLLLFHDIGVDGLKTGHTSAGGYGIIVSAKRNDRRI 180
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEE 295
AV+ G R + + L+ + +K + ++ +
Sbjct: 181 FAVVNGLDTEKERIEEAKRLIQYSLNHFNTKKIFAKDSVVEEINIVYGKDKKVPVTVAND 240
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
V T ++ +++ + K+ +K + +
Sbjct: 241 VTITYNRRLHDKIKVRI-EYKDMVPAPIKKGQEVGKIFVE 279
>gi|25010218|ref|NP_734613.1| hypothetical protein gbs0143 [Streptococcus agalactiae NEM316]
gi|23094570|emb|CAD45788.1| Unknown [Streptococcus agalactiae NEM316]
Length = 411
Score = 152 bits (384), Expect = 6e-35, Method: Composition-based stats.
Identities = 74/362 (20%), Positives = 146/362 (40%), Gaps = 31/362 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ + I+ ++ + + + + Y +D ++G ++ E + P ASLTK+
Sbjct: 1 MKKIITSILLLSCIFFMPTISAESFNASAKYALAVDLDSGKILYEKDANRPAAIASLTKI 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
MT Y+V+ + T + IS + +++ + T+ + ++ SA
Sbjct: 61 MTVYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPLEKRRYTVKQLVDAAMISSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HG 162
N A+A+AE + TE KFV M + G+ +H +NA G+
Sbjct: 121 NSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +ARD+AI+++ + ++P + + + N+ + G G+KT
Sbjct: 181 NKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + +A++ + L+ VI+ A D+ R + SLL+ +
Sbjct: 241 GTTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLA 300
Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ V + E+ + Q K + I+F+K L IT
Sbjct: 301 KGAT---YKGKEASVRDGKEQSVIAVAKNDLKVAQKKNITKQNQLKINFKK--ELTAPIT 355
Query: 335 KK 336
KK
Sbjct: 356 KK 357
>gi|228990579|ref|ZP_04150544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
12442]
gi|228769105|gb|EEM17703.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
12442]
Length = 373
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 86/343 (25%), Positives = 145/343 (42%), Gaps = 16/343 (4%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAE--TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
MR+ ++VI + M +++ P + A+ L++ ++G V+ AS+T
Sbjct: 1 MRRTWIVIALIIMCASVIPIHTYAQMNDVSAHNAILMEEHSGRVLYGKLEHESQKIASIT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MTA + K K+ + IS A S + G + L++ + L+++S N
Sbjct: 61 KIMTALLAAESGKMKEVVP-----ISDKAVRVEGSAIYLQPGKKVPLEDLVYGLMLRSGN 115
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWR 176
D A AIAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 DAAQAIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGTHYSSAYDMALLTRY 175
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAI 233
+ + F K + K YP N + A G KTGFT +G +V +A
Sbjct: 176 AMGN-ETFRKIFGTKTYQSKMWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 234
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ LI V L A + L GF K + Q+ I
Sbjct: 235 KDGLDLIVVTLNASND---WDDHMYLFDQGFKQYELTKVLGQGALSGLQEKKYTNHVYIK 291
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + +K D+ + +D EK+ I ++
Sbjct: 292 NDFAIPLTKDEKKQVMLKVELDRSAKLVDGEKVGKTIVYINEE 334
>gi|255305505|ref|ZP_05349677.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile ATCC
43255]
Length = 409
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 77/347 (22%), Positives = 148/347 (42%), Gaps = 21/347 (6%)
Query: 5 LVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + ++ +F F N L+D T ++ E D ASL+K+MT
Sbjct: 10 ILALIFIFITPVFAFADTPPVPNSSRAALLIDQETKRILFEKNIDEKMPLASLSKMMTFL 69
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + + + T + I K+ + S K G ++L ++ L++ S ND A+AI
Sbjct: 70 LAIEAVDKNQVKETDMVKIDKSTASVGGSTCKLKDGDEISLGELMQGLMLVSGNDAAIAI 129
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----------GHYTTARDMAIL 173
A+ + KTEK FV MN ++ +G+ T++ N +G+ + + +TA D+ L
Sbjct: 130 AKHIGKTEKNFVNMMNKKAEEIGMIDTYYFNPNGLPIYTDPEHKEPPIENMSTAHDIVTL 189
Query: 174 ---SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + + Q+ K + NTN + + G DG+KTG+T +G+ +
Sbjct: 190 GKYMYDHYENQVTRITTMQVYNDTKKDFTHYNTNPLLVSVPGVDGIKTGYTDNAGYCLAF 249
Query: 231 SAI-----QGDQ--SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
S + + ++ LI V+LG ++ R SASLL G N +K +
Sbjct: 250 SMMVPKDAKNERSHRLIGVVLGDGNKKNRISSSASLLKYGKDNFHSKKIAHKGDIIETPC 309
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ I+ +V +++ N + ++ K ++
Sbjct: 310 VDGIDDFKITVKVDKDLYGVVSDNENINPKVVFKNMNYPIHKGDIVG 356
>gi|22536332|ref|NP_687183.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
agalactiae 2603V/R]
gi|76787943|ref|YP_328878.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909]
gi|22533156|gb|AAM99055.1|AE014198_3 D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
agalactiae 2603V/R]
gi|76563000|gb|ABA45584.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909]
Length = 411
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 73/362 (20%), Positives = 146/362 (40%), Gaps = 31/362 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ + I+ ++ + + + + + +D ++G ++ E + P ASLTK+
Sbjct: 1 MKKIITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKI 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
MT Y+V+ + T + IS + +++ + T+ + ++ SA
Sbjct: 61 MTVYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPLEKRRYTVKQLVDAAMISSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + TE KFV M + G+ +H +NA G+
Sbjct: 121 NSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMKT 218
+ +ARD+AI+++ + ++P + + + N+ + G G+KT
Sbjct: 181 NKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + +A++ + L+ VI+ A D+ R + SLL+ +
Sbjct: 241 GTTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLA 300
Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ V + E+ + Q K + I+F+K L IT
Sbjct: 301 KGAA---YKGKEASVRDGKEQSVIAVAKNDLKVVQKKNITKQNQLKINFKK--ELTAPIT 355
Query: 335 KK 336
KK
Sbjct: 356 KK 357
>gi|312897814|ref|ZP_07757230.1| D-alanyl-D-alanine carboxypeptidase domain protein [Megasphaera
micronuciformis F0359]
gi|310621198|gb|EFQ04742.1| D-alanyl-D-alanine carboxypeptidase domain protein [Megasphaera
micronuciformis F0359]
Length = 277
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 74/270 (27%), Positives = 127/270 (47%), Gaps = 12/270 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ + A+ + + T L+D +TG ++ + P+ +PAS TK++T
Sbjct: 9 RMALFTALLWAVTVIVASAAVPTTGAEAACLIDADTGRILYQVNPNKWVHPASTTKIVTM 68
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
L PI IS+ A++ PS G +TL A++ ++V S ND+AVA
Sbjct: 69 LTALDK---GADKLDQPIHISQYAADTEPSVLGIAPGDKLTLREAMRGMMVVSGNDVAVA 125
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+AE+L T + MN + LG + THF+N +G+ HYTTA DMA ++ +P
Sbjct: 126 VAETLGGTVGAYADMMNAEAAKLGATHTHFVNPNGLTAPKHYTTAVDMAKIAAYGLKHYP 185
Query: 183 QYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
++ + + +K + + GADG+KTG+T A+G +VASA +
Sbjct: 186 EFKYTVSLPNYTVKYLDGRTKYVETTNRFLTSGYKGADGVKTGYTDAAGVCLVASATRNG 245
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+L+ + + R + ++L GF
Sbjct: 246 HTLVVSLFN---DDNRWTDAPAILDYGFRR 272
>gi|50084374|ref|YP_045884.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
[Acinetobacter sp. ADP1]
gi|49530350|emb|CAG68062.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
[Acinetobacter sp. ADP1]
Length = 436
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 86/309 (27%), Positives = 150/309 (48%), Gaps = 14/309 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR F I+++ L + E+ + ++++D +G +I+E+ PAS
Sbjct: 1 MRLFFSILSLFSLLCASVAHANLLNIAPESVEAEAWSIVDAQSGQIISEHNSHIQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ LK K T +T + N + S K G +++D L LIV
Sbjct: 61 LTKMMVAYITLKELKAGKLHKTDILTATPVVNMVMWDESQMYLKPGEQISIDQLLAGLIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + F++ MN ++ LG+ T+F N GV HY+T+ D+A+L
Sbjct: 121 MSANDAAVTLAERISGNVPDFLKRMNQEAQALGMKDTYFSNPAGVTMPDHYSTSHDLALL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ I P Y+ Y ++ + + + TN A+ ADG+KTG+T A+G+N+ +A
Sbjct: 181 AQAIVKQTPDYLSYSKLPSFSYQQRFHRATNLALKIDPTADGLKTGYTKAAGYNLALTAK 240
Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ D+ +I V+LG + + R +V+ L+++ + D + I +
Sbjct: 241 RPTMNVDIPDRRMIVVVLGTKNAHKRAEVANKLMNLAYAYTRDEEVIKNNQTIAELPVIK 300
Query: 287 NEVPNISEE 295
+ + E
Sbjct: 301 STLKMFKVE 309
>gi|317500314|ref|ZP_07958539.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089679|ref|ZP_08338578.1| hypothetical protein HMPREF1025_02161 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316898255|gb|EFV20301.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
8_1_57FAA]
gi|330405047|gb|EGG84585.1| hypothetical protein HMPREF1025_02161 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 426
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 73/345 (21%), Positives = 130/345 (37%), Gaps = 32/345 (9%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
L+D TG ++ D AS TK+MT + L+
Sbjct: 52 SIKVKPSDLYARSAVLMDAETGRILFGKNKDEQMPMASTTKIMTCILALEN-----GNLS 106
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+S AS P +G T L + L L+++S ND AVAIAE + KF
Sbjct: 107 DKAEVSSVASAQPKVKLGMTQGQTFYLKDLLYSLMLESHNDSAVAIAECIAGNVDKFADM 166
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN + LG ++T+F+ +G+ H+TTA ++A + + PQ + +I
Sbjct: 167 MNKKASQLGCNSTYFITPNGLDGQDENGIHHTTAEELARIMRYCIMESPQKEKFLEITRA 226
Query: 194 EI---------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ K N N + GA KTGFT +G+ V + + ++LI +L
Sbjct: 227 DAYTFTDCKGEKSYSCVNHNTFLKMMDGALSGKTGFTQDAGYCYVGALRKDGKTLIVALL 286
Query: 245 GALDRNT---RNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVC 297
N + + L++ G N ++ KI+ K + + + P +++
Sbjct: 287 ACGWPNNKGYKWSDTKKLMTYGMENYCYKEISPDKIDRTEKIYIKNGYTGGFPKKGKDLL 346
Query: 298 TTQKEIINYNTQMKEAKDKESHF-------IDFEKITLLKNKITK 335
+ + + E +K T++ + +
Sbjct: 347 EVEILGESKKILVGADDKDEIEIKIKKEICAPIKKGTVIGEIVYR 391
>gi|184159011|ref|YP_001847350.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
gi|332874790|ref|ZP_08442660.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6014059]
gi|183210605|gb|ACC58003.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
gi|322508991|gb|ADX04445.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii
1656-2]
gi|323518975|gb|ADX93356.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii
TCDC-AB0715]
gi|332737051|gb|EGJ68008.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6014059]
Length = 439
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 91/343 (26%), Positives = 158/343 (46%), Gaps = 15/343 (4%)
Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ FL + + L+N +E+ + +T++DT +G +IAE+ PAS
Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIASESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ +K K L IT + + ++ S K G +++D L LIV
Sbjct: 61 LTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L
Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A
Sbjct: 181 SQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240
Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ + L+ ++LG R +++ L+++ + D I +
Sbjct: 241 RPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVIPEQKLIAELPVIK 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + E + + D + ++I +L
Sbjct: 301 STLKMFKVETKQPTIVTTSLYAEP-TPIDLNTFDYATQRIQVL 342
>gi|149184554|ref|ZP_01862872.1| Serine-type D-Ala-D-Ala carboxypeptidase [Erythrobacter sp. SD-21]
gi|148831874|gb|EDL50307.1| Serine-type D-Ala-D-Ala carboxypeptidase [Erythrobacter sp. SD-21]
Length = 388
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 72/317 (22%), Positives = 133/317 (41%), Gaps = 16/317 (5%)
Query: 5 LVIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
LV +A + P ++ E + P L D +G V+ E D + PAS+T
Sbjct: 8 LVAFCVAATAVCVPAVAQKAERSVPPEADVAPIAFLFDLTSGQVLFEREADRRFMPASIT 67
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVK 114
K+MT ++ F +++E K + TI S + +T+D+ + +
Sbjct: 68 KVMTTFLAFEWMEEGKIVPAQSFTIKPEVWRAWNNVGSTMFLPHDARVTVDDLVHGVTTV 127
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG-VVQHGHYTTARDMAIL 173
SAND A A+A+ + +++V MN+ + +G++ +HF +G + + TARD+ L
Sbjct: 128 SANDGAAALADGAAGSIEEWVAAMNSKASEIGMADSHFGTPNGWMDDGRTFVTARDLTTL 187
Query: 174 SWRIKTDFPQYMHYF-QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ + P +F PN + G GADG+KTGFT +G+ + SA
Sbjct: 188 ATAMIRRHPTKYRHFIGQPAFTYNNITQPNHDPISGVVPGADGIKTGFTNQAGYGFLGSA 247
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ + L+ V+ + R++ + +L+ GF + ++
Sbjct: 248 ERNGRRLVMVVAASPRARDRDRAARNLIEWGFGAFEQYRLF----APEAPVGVAEVQDGS 303
Query: 293 SEEVCTTQKEIINYNTQ 309
+ EV I +
Sbjct: 304 AREVALVSPYGIYVDLP 320
>gi|312622507|ref|YP_004024120.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1
[Caldicellulosiruptor kronotskyensis 2002]
gi|312202974|gb|ADQ46301.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Caldicellulosiruptor kronotskyensis 2002]
Length = 451
Score = 152 bits (383), Expect = 7e-35, Method: Composition-based stats.
Identities = 74/349 (21%), Positives = 139/349 (39%), Gaps = 27/349 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F ++ + + + L++ +TG ++ E + PAS TK++TA
Sbjct: 19 FALLFTYPLYTYSQQESTDKLFLSAKSAILVEAHTGQILFEKNSNLTCFPASTTKVLTAL 78
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
V S+ L +S A+ P S+ G T++ + L +++ SAND A
Sbjct: 79 VAISYEH----NLNKIFKVSSKATMIEPGSSSYYLNPGETISFQDLLYAMLLISANDAAN 134
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
IAE++ FV+ MN +K++G +HF+N +G+ HYTTA D+++++ + +
Sbjct: 135 VIAENIAGNIPAFVEKMNQYAKSIGAENSHFVNPNGLHSPQHYTTAYDLSLIARQAYQNE 194
Query: 182 P--------QYMHYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNI 228
+Y + + + N N + + A G+KTG+T + +
Sbjct: 195 ILRKIFSTVEYRITTASMHKKPEWQIIYNINKLLRKNSKYYYPYATGIKTGYTAQAKRCL 254
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ASA + + LIAVIL + L + GF N K +
Sbjct: 255 IASAKKDNIELIAVIL---SSEDAFSDAIKLFNYGFNNFKRVKLFSEHQIVGKVLIDKTN 311
Query: 289 VPNISEEVCTTQKEIINYNTQMK-----EAKDKESHFIDFEKITLLKNK 332
+ + T + N + + + + K T++ N
Sbjct: 312 QKWLDGYLKTPVYVLQNVYSPAESDLTYTIDFLKDLKLPIYKDTVIGNV 360
>gi|222529246|ref|YP_002573128.1| serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
bescii DSM 6725]
gi|222456093|gb|ACM60355.1| Serine-type D-Ala-D-Ala carboxypeptidase [Caldicellulosiruptor
bescii DSM 6725]
Length = 451
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 74/349 (21%), Positives = 139/349 (39%), Gaps = 27/349 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F ++ + + + L++ +TG ++ E + PAS TK++TA
Sbjct: 19 FAILFTYPLYTYSQQESTDKLGLSAKSAILVEAHTGQILFEKNSNLTCFPASTTKVLTAL 78
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
V S+ L +S A+ P S+ G T++ + L +++ SAND A
Sbjct: 79 VAISYEH----NLNKIFKVSSKATMIEPGSSSYYLNPGETISFQDLLYAMLLISANDAAN 134
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
IAE++ FV+ MN +K++G +HF+N +G+ HYTTA D+++++ + +
Sbjct: 135 VIAENISGNIPAFVEKMNQYAKSIGAENSHFVNPNGLHSPQHYTTAYDLSLIARQAYQNE 194
Query: 182 P--------QYMHYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNI 228
+Y + + + N N + + A G+KTG+T + +
Sbjct: 195 ILRKIFSTVEYRITTASMHKKPEWQIIYNINKLLRKNSKYYYPYATGIKTGYTAQAKRCL 254
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ASA + + LIAVIL + L + GF N K +
Sbjct: 255 IASAKKDNIELIAVIL---SSEDAFSDAIKLFNYGFNNFKRVKLFSEHQIVGKVLIDKTN 311
Query: 289 VPNISEEVCTTQKEIINYNTQMK-----EAKDKESHFIDFEKITLLKNK 332
+ + T + N + + + + K T++ N
Sbjct: 312 HKWLDGYLKTPVYVLQNVYSPAESDLTYTIDFLKDLKLPIYKDTVIGNV 360
>gi|302871943|ref|YP_003840579.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Caldicellulosiruptor obsidiansis OB47]
gi|302574802|gb|ADL42593.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Caldicellulosiruptor obsidiansis OB47]
Length = 451
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 76/349 (21%), Positives = 143/349 (40%), Gaps = 27/349 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F ++ + + + L++ +TG ++ E P+ PAS TK++TA
Sbjct: 19 FAILFTYPLYTYSQQESTDKLGLSAKSAILVEAHTGQILFEKNPNLRCFPASTTKVLTAL 78
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
V S+ L +S A+ P S+ G T++ + L +++ SAND A
Sbjct: 79 VAISYEH----DLNKIFKVSSKATMIEPGSSSYYLNPGETISFQDLLYAMLLISANDAAN 134
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
IAE++ + +FV+ MN +K++G +HF+N +G+ HYTTA D+++++ + +
Sbjct: 135 VIAENIAGSIPEFVKKMNEYAKSIGAKNSHFVNPNGLHSPEHYTTAYDLSLIARQAYQNE 194
Query: 182 P--------QYMHYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNI 228
+Y + + + N N + + A G+KTG+T + +
Sbjct: 195 MLRKIFSTVEYRITTASMHKKPEWQIIYNINKLLRKNSKYYYPYATGIKTGYTAQAKRCL 254
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ASA + D LIA+IL + D + L + GF N K +
Sbjct: 255 IASAKKDDIELIAIILFSEDA---FSDAIKLFNYGFNNFKREKLFSENQIVGKVLIDETN 311
Query: 289 VPNISEEVCTTQKEIINYNTQMK-----EAKDKESHFIDFEKITLLKNK 332
+ + + N + + + I K T++ N
Sbjct: 312 HKWLDGYLKIPVYVLQNVYSPAESNFTYTVDFSKDLKIPIYKDTVIGNV 360
>gi|255318395|ref|ZP_05359628.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens
SK82]
gi|262378625|ref|ZP_06071782.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein
[Acinetobacter radioresistens SH164]
gi|255304387|gb|EET83571.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens
SK82]
gi|262299910|gb|EEY87822.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein
[Acinetobacter radioresistens SH164]
Length = 437
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 85/335 (25%), Positives = 149/335 (44%), Gaps = 14/335 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
MR F + + L + + E+ + +++LD +G +IAE + +PAS
Sbjct: 1 MRIFAYLFILFSLCCASLANARLLQVVPESVEAAAWSILDPQSGQIIAEYNSEVQRSPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ ++ K +T + + S K+G +++D L LIV
Sbjct: 61 LTKMMVAYIALKEIENGKLNRNEILTATPVVKMVMWDESQMYLKEGEQISVDQLLAGLIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + F++ MN ++ LG+ THF N G+ GHY+TA D+A+L
Sbjct: 121 MSANDAAVTLAERISGNVPAFIERMNQEAQKLGMKNTHFTNPAGITMDGHYSTAHDLALL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ D P Y++Y + + + TN + DG+KTGFT A+G+N+ +A
Sbjct: 181 GQALVNDTPDYLNYSKQQSFTYNNHFHRATNLLLKQDATVDGLKTGFTKAAGYNLALTAS 240
Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ ++ LI V++G R +V+ LL++G+ D I +
Sbjct: 241 RPTMNADLPNRRLIVVVMGTTSAVKRAEVAYKLLNLGYAYTRDEVAIKDKQLLGELPVVK 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
+ + + + + Q +
Sbjct: 301 STLKMFKVKSAQPKIITTSLYNQPYAIDLQTFDNA 335
>gi|308071619|ref|YP_003873224.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus polymyxa E681]
gi|305860898|gb|ADM72686.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus polymyxa E681]
Length = 313
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 75/281 (26%), Positives = 124/281 (44%), Gaps = 21/281 (7%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
V+I + ++ L L+D +TG ++ + D P A+++KLMT +V
Sbjct: 15 VLIILIFITLGPRLLIGKPNVDAEAAVLMDMHTGELLMDVNGDTPMPSANMSKLMTELLV 74
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
++ + + IS+ AS N + + G MT+ + ++V SAND AVA+AE
Sbjct: 75 LEDIRAGRLGWNDEVRISRYASTVGGVNLSLRYGERMTVSELFQSMVVYSANDAAVALAE 134
Query: 126 SLCKTEKKFVQHMNNTSKNLG-LSATHFMNAHGV------VQH------GHYTTARDMAI 172
E FV+ MN + +G S + F NA G H TA D A
Sbjct: 135 RSAGNESAFVKRMNGKAAQIGLSSDSRFSNASGAGQSELGPNHPEDIQGETKMTASDTAK 194
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV--------GTFLGADGMKTGFTCAS 224
L+ + T P+ + +E+K K +N ++ G DG+K G+T +
Sbjct: 195 LASYLITSHPEILRTSSRTQMELKDKGIYISNTNWMLPSLAGPYSYAGTDGLKAGYTSDA 254
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
G+ +A Q + L+AV+LGA + R + + L GF
Sbjct: 255 GYCFTGTAEQHGRRLVAVVLGAPSKEERFEQTRRLFDYGFS 295
>gi|42781103|ref|NP_978350.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
ATCC 10987]
gi|217959457|ref|YP_002338009.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH187]
gi|229138682|ref|ZP_04267264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
BDRD-ST26]
gi|42737024|gb|AAS40958.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
ATCC 10987]
gi|217066480|gb|ACJ80730.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH187]
gi|228644801|gb|EEL01051.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
BDRD-ST26]
gi|324326015|gb|ADY21275.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 317
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 12/265 (4%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++ + P I ++D + G +I ++ + + PAS++K+MTAY++ +
Sbjct: 49 LVEKVVPPKYIPPEIDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHN 108
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
K P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+E
Sbjct: 109 GKVRWEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSE 168
Query: 132 KKFVQHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHY 187
K FVQ MN +K L +S F NA G+ TA D+A L++ + D+P+ +
Sbjct: 169 KDFVQLMNAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEV 228
Query: 188 FQIKGLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
++ ++ N N G DG+KTGFT ++G+ +A QGD +
Sbjct: 229 THLRQSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRI 288
Query: 240 IAVILGALDRNTRNKVSASLLSMGF 264
I V++G + R + L+S F
Sbjct: 289 ITVVMGTKGKTKRFTETNKLMSYAF 313
>gi|222095601|ref|YP_002529658.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
gi|221239659|gb|ACM12369.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
Length = 317
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 12/265 (4%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++ + P I ++D + G +I ++ + + PAS++K+MTAY++ +
Sbjct: 49 LVEKVVPPKYIPPEIDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHN 108
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
K P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+E
Sbjct: 109 GKVRWEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSE 168
Query: 132 KKFVQHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHY 187
K FVQ MN +K L +S F NA G+ TA D+A L++ + D+P+ +
Sbjct: 169 KDFVQLMNAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEV 228
Query: 188 FQIKGLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
++ ++ N N G DG+KTGFT ++G+ +A QGD +
Sbjct: 229 THLRQSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRI 288
Query: 240 IAVILGALDRNTRNKVSASLLSMGF 264
I V++G + R + L+S F
Sbjct: 289 ITVVMGTKGKTKRFTETNKLMSYAF 313
>gi|299820880|ref|ZP_07052769.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria grayi DSM 20601]
gi|299817901|gb|EFI85136.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria grayi DSM 20601]
Length = 441
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 81/366 (22%), Positives = 133/366 (36%), Gaps = 43/366 (11%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
I+ L + ++ +TG V+ E PD AS+TK++ Y++
Sbjct: 21 ISTFSLVPNDAQAATTPNVNAKAAFTIEESTGKVLYEKNPDQLLGIASMTKMLDEYILLE 80
Query: 68 FLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + K T + IS A + SN + G T+ + + + SAN A+A+
Sbjct: 81 KIDQGKLKWTDKVKISGYAHEVSQDTSLSNVPLRNGEFYTVKELYQAMAIYSANGAAIAL 140
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------------HYTTARDM 170
AE + +EK FV MN + +L L F+N G+ + TAR M
Sbjct: 141 AEKIAGSEKAFVGLMNEKANSLKLGKHKFVNVTGLNNSDLKGKQQIGGKNSENKMTARGM 200
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA----VGTFLGADGMKTGFT 221
A L+ + +P + L + N NW + G DG+KTG T
Sbjct: 201 AKLAKSLIDTYPDVLKTASTTKLAFRKGTSDQINMSNWNWLLPGLIYGRKGVDGLKTGTT 260
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRN-------TRNKVSASLLSMGFYNKTDRKKIN 274
+G + A+A Q +I VIL A N TR K + +L F N ++
Sbjct: 261 DYAGMCLTATAKQDGMRVITVILHANGGNSSDQHDGTRFKETNKMLDYAFDNFKVKQVAK 320
Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES---------HFIDFEK 325
+ + + + V + +N +A K S +K
Sbjct: 321 AG-QAVKKPASISVKDGKEDSVKLETNKNVNLVVPKDQANPKLSENVKLVSKEITAPVKK 379
Query: 326 ITLLKN 331
L
Sbjct: 380 DQKLGT 385
>gi|302385725|ref|YP_003821547.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
saccharolyticum WM1]
gi|302196353|gb|ADL03924.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
saccharolyticum WM1]
Length = 439
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 70/343 (20%), Positives = 128/343 (37%), Gaps = 37/343 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D +TG ++ D AS TK+MT + + L+ +T S+
Sbjct: 56 NLYAQSAVLMDASTGRILYGKNEDIARPMASTTKIMTCILALEY-----GNLSDTVTASQ 110
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NAS P + KG T L + L L+++S ND A+ IAE + +++ F MN +++
Sbjct: 111 NASSQPKVHLGVYKGETFLLKDLLYSLMLESHNDAAMMIAEHIGGSQEGFAGLMNQKARD 170
Query: 145 LGLSATHFMNAHGVVQH--------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI- 195
LG + T+F+ +G+ H TTA D+A + P+ + +I G +
Sbjct: 171 LGCTDTYFITPNGLDAREEKDGQVKEHSTTAADLARIMNYCIGQSPKKKEFLEITGTKSY 230
Query: 196 --------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA- 246
+ N N + GA KTGFT +G++ V +A + +LG
Sbjct: 231 SFTDLEGKRSYSCNNHNTLLAMMNGAFSGKTGFTGGAGYSYVGAAQDNGRIYTIALLGCG 290
Query: 247 --LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD-------FYQQNLSNEVPNISEEVC 297
+ + + L G R + +E +S +
Sbjct: 291 WPPHKAYKWSDARKLFQYGMERFHYRNVYKDLSLPDIPVKEGIPASGRLDEPVTVSCIIG 350
Query: 298 TTQKEIINY-----NTQMKEAKDKESHFIDFEKITLLKNKITK 335
+++ + + + + K + N I +
Sbjct: 351 GEEEKDLTLLLADEEEVTVQTEIPKELIAPVRKGQAVGNVIYR 393
>gi|210623818|ref|ZP_03294067.1| hypothetical protein CLOHIR_02018 [Clostridium hiranonis DSM 13275]
gi|210153313|gb|EEA84319.1| hypothetical protein CLOHIR_02018 [Clostridium hiranonis DSM 13275]
Length = 453
Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats.
Identities = 82/369 (22%), Positives = 142/369 (38%), Gaps = 40/369 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE--------TNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ ++ +L F SI + L+D TG V+ + +
Sbjct: 1 MKKISSVLIAFLLVFASVFTSIGSVFADQKVVNLEAKSAVLMDYETGKVLYQKNGNVKIY 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS TK TAY+V + L ITI N PS+ KKG T T+ L L+
Sbjct: 61 PASTTKAWTAYLVIKHVP----DLNEKITIG-NLPYIEPSSMFLKKGETFTVKELLTALM 115
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V S ND+A +AE + + KF MN ++ +G + THF N +G+ HYTTA+DMA+
Sbjct: 116 VHSCNDVAYVLAEHVSGSIPKFADLMNKEAEAIGCTGTHFNNPNGLPDPNHYTTAKDMAL 175
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT---------------------FL 211
++ + +D + K ++ K K +
Sbjct: 176 IARKCMSD-SVFREIVATKSVKFKPTKQYPHERVYTNSNKFLTSHQKITYKGKRIDIKYD 234
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
DG+KTGFT A+G ++ SA++ +Q +I+ + + + S +L+ F N
Sbjct: 235 IVDGIKTGFTNAAGKCLLTSAVKDNQRIISAVFNS-TNDGIYVDSRTLIDYVFENYDSFT 293
Query: 272 KINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
++ ++ + + E + + D + +
Sbjct: 294 IMDKADYVDTKRKWFSTQKKLMYQPKESYSVVLPKGQTVTDEFTFKTDLQDTSLPISAGD 353
Query: 328 LLKNKITKK 336
+ K
Sbjct: 354 KIGEFYIYK 362
>gi|312865485|ref|ZP_07725712.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus downei
F0415]
gi|311099003|gb|EFQ57220.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus downei
F0415]
Length = 411
Score = 152 bits (382), Expect = 9e-35, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 135/366 (36%), Gaps = 33/366 (9%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++F + ++A ++L + + ++ TG ++ E P AS+TK
Sbjct: 1 MKKFFISLLMAFSLLFTASLAKADDFDAPAKHAIAVEATTGKILYEKDASTPDGVASMTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
++T Y+V+ + E K + + IS A + ++ +L+
Sbjct: 61 ILTVYMVYKAIDEGKLSWNSKVKISDYAYDLTTNSEASNVPMDAREYTVKELVNAALIAS 120
Query: 119 IAVAIAESLCK---TEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QH 161
A K E FV M K G+ +NA G+
Sbjct: 121 ANSAAIALAEKLGGDEATFVDMMQAQLKQWGIKDAKLVNASGLNNSYLGDHIYPGSKSDD 180
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMK 217
+ +A+DMAI++ + +D+P + + + N + G DG+K
Sbjct: 181 ENLMSAKDMAIIARHLISDYPDVLDITKKTSEKFGNTDMATFNMMLDGMPYAREGVDGLK 240
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKI 273
TG T +G + VA++ + +I+V++ A + + R + + +L+ YN +
Sbjct: 241 TGTTELAGQSFVATSTENGMRVISVVMHADNADNNQYARFEATNKILNYVTYNFQLTNLV 300
Query: 274 NYII-----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
K S VP +++E +I + + + KE +K +
Sbjct: 301 VKGESYKSSKASVIDGKSKTVPAVAKEDFQVVTKIGSDHKPSGKVSTKE-VTAAVKKGSQ 359
Query: 329 LKNKIT 334
+ +
Sbjct: 360 VGSLTY 365
>gi|228985080|ref|ZP_04145247.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228774567|gb|EEM22966.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 317
Score = 152 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEIDAKAAMIIDASNGDIIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKGFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTKGKTKRFTETNKLMSYAF 313
>gi|293609789|ref|ZP_06692091.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828241|gb|EFF86604.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 439
Score = 152 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 86/314 (27%), Positives = 148/314 (47%), Gaps = 14/314 (4%)
Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS
Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ +K K IT + + ++ S K G +++D L LIV
Sbjct: 61 LTKMMVAYIALKEIKAGKLKKEEIITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + +FVQ MN ++ LG+ THF N G+ H+TTA D+++L
Sbjct: 121 MSANDAAVTLAEKISGDVPRFVQRMNQEAQALGMKDTHFSNPAGITMPDHFTTAHDLSLL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A
Sbjct: 181 SQAVIKQTPEYLHYSKMPNFSYNQRFHHATNLALKYDPYVDGLKTGYTKAAGYNLALTAS 240
Query: 234 QG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ + L+ ++LG R +++ L+++ + D I +
Sbjct: 241 RPSFSSDLTQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVIIPEQKLIAELPVVK 300
Query: 287 NEVPNISEEVCTTQ 300
+ + E
Sbjct: 301 STLKMFKVETKQPT 314
>gi|262372029|ref|ZP_06065308.1| penicillin-binding protein 6B [Acinetobacter junii SH205]
gi|262312054|gb|EEY93139.1| penicillin-binding protein 6B [Acinetobacter junii SH205]
Length = 439
Score = 152 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 84/289 (29%), Positives = 141/289 (48%), Gaps = 14/289 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ L + L + + ET + ++++D +G +IAE+ PAS
Sbjct: 1 MKFILSLFTFFSLLCVNLAHANLLKIAPETVEAQAWSIVDAQSGQIIAEHNSHVQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ ++ K +T + N + S K G +++D L LIV
Sbjct: 61 LTKMMVAYIALKEIEAGKLRKEDILTATPVVNTVMWDESQMYLKTGEKISVDQLLAGLIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + + +FV MN ++ LG+ THF N G+ HY+TA D+ +L
Sbjct: 121 MSANDAAVTLAEKISGSVPQFVARMNQEAQALGMKDTHFSNPAGITMPDHYSTAADLGLL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ I D P+Y++Y ++ + + TN A+ ADG+KTG+T A+G+N+ +A
Sbjct: 181 AKAIVQDTPEYLYYSKMPSFSYNQRVHHATNLALKMDPTADGLKTGYTKAAGYNLALTAE 240
Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
+ + LI ++LG R +V+ L+++ F D I
Sbjct: 241 RPTFNPDVEKRRLIVIVLGTPSAVKRAEVAHKLMNLAFTYTRDEVVIPK 289
>gi|251782267|ref|YP_002996569.1| carboxypeptidase, penicillin-binding protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242390896|dbj|BAH81355.1| carboxypeptidase, penicillin-binding protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
Length = 411
Score = 152 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 74/378 (19%), Positives = 148/378 (39%), Gaps = 42/378 (11%)
Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++ ++ + + + L+ + +++ ++G V+ E P ASLTK
Sbjct: 2 IKRLAILFFVVLACSGLGKTVLAADFQVGAEHAIVVEVDSGRVLYEKDAKTPDAIASLTK 61
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
L+TAY+V + + L+ + +S A ++ T ++ + L+ +V S
Sbjct: 62 LVTAYLVLDKVNSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQKTYSVQDLLEATLVAS 121
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M G+++ NA G+
Sbjct: 122 SNSAAIALAEKVAGSEPNFVAQMRAQLSRWGITSGKIFNASGLPNEVLKDHRYPGSALEE 181
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+AI++ + DFP+ + + ++ G + N + G DG+K
Sbjct: 182 ENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLK 241
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ LI VIL A NTR + + LL RK +
Sbjct: 242 TGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANHLLDYVAKRYHRRKIL 301
Query: 274 NYI----IKDFYQQNLSNEV--PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ F N + + +++V + +S + K
Sbjct: 302 KKGSLMTERPFSVVNGTAQTLSTYAAKDVTLVLGTDELAPRPEQFVVSTDSLLVPIAKGE 361
Query: 328 LL---------KNKITKK 336
++ + KK
Sbjct: 362 VVAYLTSPRIAGERYLKK 379
>gi|319744055|gb|EFV96432.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus agalactiae
ATCC 13813]
Length = 411
Score = 152 bits (382), Expect = 1e-34, Method: Composition-based stats.
Identities = 71/363 (19%), Positives = 143/363 (39%), Gaps = 33/363 (9%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ + I+ ++ + + + + + +D ++G ++ E + P ASLTKL
Sbjct: 1 MKKIITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
MT Y+V+ + T + IS + +++ + T+ + ++ SA
Sbjct: 61 MTVYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPLEKRRYTVKQLVDAAMISSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HG 162
N A+A+AE + TE KFV M + G+ +H +NA G+
Sbjct: 121 NSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +ARD+AI+++ + ++P + + + N+ + G G+KT
Sbjct: 181 NKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + +A++ + L+ VI+ A D+ R + SLL+ +
Sbjct: 241 GTTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLA 300
Query: 275 YIIKDFYQ------QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + + ++ QK+ I Q+K KE K
Sbjct: 301 KGAAYKGKEVSVRDGKEQSVIAVAKNDLKVAQKKNITKQNQLKINFKKE-LTAPITKKEN 359
Query: 329 LKN 331
L
Sbjct: 360 LGK 362
>gi|118443151|ref|YP_878109.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
gi|118133607|gb|ABK60651.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
Length = 375
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 69/346 (19%), Positives = 134/346 (38%), Gaps = 26/346 (7%)
Query: 1 MRQF-----LVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDH 49
M++ ++ I + P + E +D+ + V+ E +
Sbjct: 1 MKKLRTISIILNICLIFNIAFVPSIEATEPKNNSIYVDARCAIAMDSKSKCVLYEKNAEM 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS TK+MT V + L T +S A+ S +KKG ++L L
Sbjct: 61 LVPIASTTKIMTTLVALKY-----GNLDTKYEVSPKAASIRGSKVGYKKGEQISLKELLY 115
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
L+++S ND A+ IAE + + +KF + MN + +G +HF + HG+ HY+TA D
Sbjct: 116 GLMLRSGNDAAITIAEGISGSVEKFCELMNEYAIEIGAFNSHFESPHGLDSQNHYSTAYD 175
Query: 170 MAILSW----RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+A ++ + + K + Y N N + A+G+KTG+T +G
Sbjct: 176 LARITAKAKENKLFNEIVGVKDIDEKQHGF-TRSYHNINKILYQIPNANGVKTGYTGGAG 234
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--IIKDFYQQ 283
+V S + D +I V+L R K + + N +K ++ ++ +
Sbjct: 235 KCLVTSVKEDDDDVIIVVLNCT---PRWKETKKIYDFVKENYDFKKLVSKDQVLDNIEDN 291
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + ++ + ++ + S + +
Sbjct: 292 KGNKVKLVCNNDLVIPVGKQEKCEYKIIKPTKLPSRVYKGINLGKI 337
>gi|239501103|ref|ZP_04660413.1| Penicillin-binding protein 6B precursor [Acinetobacter baumannii
AB900]
Length = 439
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 91/343 (26%), Positives = 157/343 (45%), Gaps = 15/343 (4%)
Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS
Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ +K K L IT + + ++ S K G +++D L LIV
Sbjct: 61 LTKMMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L
Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
S + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A
Sbjct: 181 SQAVIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240
Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ + L+ ++LG R +++ L+++ + D I +
Sbjct: 241 RPSFSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLTYAYTRDEVVIPEQKLIAELPVIK 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + E + + D + ++I +L
Sbjct: 301 STLKMFKVETKQPTIVTTSLYAEP-TPIDLNTFDYATQRIQVL 342
>gi|322392110|ref|ZP_08065572.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus peroris
ATCC 700780]
gi|321145010|gb|EFX40409.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus peroris
ATCC 700780]
Length = 413
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 70/353 (19%), Positives = 140/353 (39%), Gaps = 31/353 (8%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++ + + ++ TG ++ E P AS++KL+T Y+V+ L +
Sbjct: 14 CASTTTVFAQDFNVPAKHAIAVEATTGKILYEKDATQPVEIASISKLLTVYLVYEALDQG 73
Query: 73 KAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K L+TP+ IS + +++ + T++ L+ +V SAN A+A+AE +
Sbjct: 74 KITLSTPVEISDYPYKLTTNSEASNVPMEARNYTVEELLEATLVSSANSAAIALAEKIAG 133
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSW 175
+EK FV M G+ +N+ G+ + +A D+A+++
Sbjct: 134 SEKDFVDMMKAKLLEWGIQDATLVNSTGLNNETLGNNIYPGSKKDDENKLSAYDVAVVAR 193
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVAS 231
+ +PQ + + G +TN+ + G DG+KTG T +G + V +
Sbjct: 194 NLILKYPQVLEITKKPSSTFAGMTIHSTNYMLEGLPAYRGGVDGLKTGTTDKAGASFVGT 253
Query: 232 AIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKKINYI------IKDFY 281
++ +I V+L A ++NT R +++LL N + +N
Sbjct: 254 TVEKGMRIITVVLNADNQNTNPYARFTATSALLDYISSNFALQTIVNQGESYQDSKSPVL 313
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ E++ Q+ + + D H E T++ +
Sbjct: 314 DGKQNTVAAVAKEDIKIVQRLGSRAQSSVTYTADTTEHTAPLEAGTVVGHLTY 366
>gi|253579895|ref|ZP_04857163.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848894|gb|EES76856.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 459
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/331 (20%), Positives = 132/331 (39%), Gaps = 13/331 (3%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+++ +N L+D ++G ++ D PAS+TK+MT +
Sbjct: 68 VSISTNEISGWPAGPEITSETGVLMDADSGTLLYSKGGDEIRYPASITKIMTLLLAVENC 127
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K+ ++ T + N + G M++ L L+++SAN++A IAE +
Sbjct: 128 SLKEDVVFTETGT--RDISWDSGNIGMQVGEVMSMRACLYALVIRSANEVAAQIAEHVGG 185
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM---- 185
TE+ FV MN + +G + THF+NA G+ HY+TA DMA++ +
Sbjct: 186 TEQHFVDMMNERAAQIGCTNTHFVNASGLPDPDHYSTAHDMALIMREGLKNKKFRRIIGA 245
Query: 186 --HYFQIKGLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + + + + + G G KTG+T +G +V +A + +
Sbjct: 246 TDYTIKPTNMNSEPRVLHTHHPMLAPESSYHYDGCIGGKTGYTSEAGNTLVTAAGKNGTT 305
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
I V + A D + S +L + G+ N T + + + N + +
Sbjct: 306 YITVTMKAADLAVASTDSTALFNYGYQNFTKAQVNGGEVSVPNGVTVDNLTVQENSQNGN 365
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
T + + + + E+ + L
Sbjct: 366 TVDDYYYNDYLLGSVEVPEATPTPEPAVDAL 396
>gi|331084355|ref|ZP_08333459.1| hypothetical protein HMPREF0992_02383 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330401619|gb|EGG81200.1| hypothetical protein HMPREF0992_02383 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 417
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 12/274 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
A L++ ++G V+ + + PAS TK+MTA ++ + + +T
Sbjct: 34 SGWPSAPEISSASGVLMEASSGQVLFDKSMNEIRYPASTTKVMTALIILENIPDLNKNIT 93
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I + + S + G +T++ L +++ SAN++ +A + + + F
Sbjct: 94 FTDIILPDLAPGN-STINAQVGEVLTVEQCLYAIMLASANEVCTQMAVEVAGSVENFTAM 152
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ------YMHYFQIK 191
MN + +G + THF+NA+G+ HYTTA D+A++ + +
Sbjct: 153 MNAKAAEIGCTNTHFVNANGLPDPNHYTTAYDLALILREAVKNEAFCKIAGAAKYTIPPT 212
Query: 192 GLEIKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ N N + GA KTG T A+ +V +A + D +LI V+L +
Sbjct: 213 NKTAASRNMENHNALLVDGKYYYEGAIAGKTGHTEAARNTLVTAASREDMTLICVVLRSE 272
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+ R + +L GF N +
Sbjct: 273 NDE-RFTDTKTLFDYGFDNFHSQSLYWMDKTTPV 305
>gi|291522282|emb|CBK80575.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
Length = 383
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 66/350 (18%), Positives = 127/350 (36%), Gaps = 30/350 (8%)
Query: 8 IAMAMLSNIFPFLSIAET----------NKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
I + I + AET L+D ++G ++ + AS T
Sbjct: 6 IFCTLFILIQNPAAAAETGQQEEKEKLSLNARAAVLMDADSGRILYGKNETMAFPMASTT 65
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT V + + S AS P +G +++ ++++S N
Sbjct: 66 KIMTLIVALEHNE-----PDQIVMASAGASAMPEVRLGVHEGERYRMEDLYYAMMLESFN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAIL 173
D A+ IAE + + F + MN + +LG + T+F+ +G+ H +TA DMA +
Sbjct: 121 DAAMMIAEGTVGSVENFAELMNEKAISLGCTQTYFITPNGLDAADEKGVHSSTAEDMAKI 180
Query: 174 SWRIKTD-----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ Q Y + + N N + G KTG+T +G+
Sbjct: 181 MRYAIDNEDFLKITQTADYSFTDCDRKRSFEVHNKNVLLTMMDGVLSGKTGYTADAGYCY 240
Query: 229 VASAIQGDQSLIAVILGALDRNT---RNKVSASLLSMGFYNKTDRKK-INYIIKDFYQQN 284
V + + D++ IA +LG+ + +LL G N + I+ + D
Sbjct: 241 VCAVKKDDRTFIAALLGSGWPPHKGYKWLDVQTLLDYGDKNYRYQTIDISKGVPDRQVHV 300
Query: 285 LSNEV--PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ E + + + + + + E+ E + +
Sbjct: 301 MNGEQDFATVRAKQTNYRFLLSSEDKVHVESVLPGQLEAPVEAGQPVGSI 350
>gi|77411808|ref|ZP_00788143.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
agalactiae CJB111]
gi|77162143|gb|EAO73119.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
agalactiae CJB111]
Length = 411
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 72/362 (19%), Positives = 146/362 (40%), Gaps = 31/362 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ + I+ ++ + + + + + +D ++G ++ E + P ASLTK+
Sbjct: 1 MKKIITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKI 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
MT Y+V+ + T + IS + +++ + T+ + ++ SA
Sbjct: 61 MTVYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPLEKRRYTVKQLVDAAMISSA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + TE KFV M + G+ +H +NA G+
Sbjct: 121 NSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMKT 218
+ +ARD+AI+++ + ++P + + + N+ + G G+KT
Sbjct: 181 NKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + +A++ + L+ VI+ A D+ R + SLL+ +
Sbjct: 241 GTTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLA 300
Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ V + E+ + Q + + I+F+K L IT
Sbjct: 301 KGAA---YKGKEASVRDGKEQSVIAVAKNDLKVVQKRNITKQNQLKINFKK--ELTAPIT 355
Query: 335 KK 336
KK
Sbjct: 356 KK 357
>gi|328944931|gb|EGG39089.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK1087]
Length = 422
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 65/375 (17%), Positives = 131/375 (34%), Gaps = 41/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + + +D +G ++ E + P S+T L+
Sbjct: 1 MKRLFLCLLVLVGMTASKVAADDFNIAAKSAIAVDATSGKILYEKDANTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + ++ S+N
Sbjct: 61 TVYLVYEAIDRGDLTADTYVDISDYAYTLTSNPNISNVPLEAKRYKAKDLIAASLMSSSN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FVQ M K G+ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASAS 180
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGT 209
+ +A D+A++S + DFPQ +I G N N+
Sbjct: 181 TSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNF 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFY 265
G DG+K G + G + VA+ + +I V+L D R +ASL++
Sbjct: 241 RSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQ 300
Query: 266 NKTDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N T + N S++ ++ +++ + +++
Sbjct: 301 NFTQTTIVAEGETYNKSNSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGF 360
Query: 320 FIDFEKITLLKNKIT 334
+K T L
Sbjct: 361 QAPLKKNTELGTLTY 375
>gi|168335230|ref|ZP_02693333.1| Serine-type D-Ala-D-Ala carboxypeptidase [Epulopiscium sp. 'N.t.
morphotype B']
Length = 377
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 75/339 (22%), Positives = 133/339 (39%), Gaps = 21/339 (6%)
Query: 1 MRQFLVIIAMAMLSNI-FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ + +A+ ++ P + T L++ + V+ + AS TK+
Sbjct: 1 MKRGITAVAIIVVCLSNMPVEAKIGTLGGKGVVLVEPESMRVLYGINENTQLPMASTTKI 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTA + L +T+S NA++ PP + K+ L + L L+++S ND
Sbjct: 61 MTAIIALEN-----GNLEDVVTVSANAAKAPPVDLKLKENEKQYLGDLLYSLMLQSHNDT 115
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
AVAIAE + + ++F + M + LG T F +G+ HY+T D+A++
Sbjct: 116 AVAIAEHIGGSVEEFCEMMTTKANELGAVNTKFETPNGLDSEQHYSTPYDLALIGAYALK 175
Query: 180 DFPQ-------YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ YM+ + + N N + GA+G+KTGFT +G+ V SA
Sbjct: 176 NPKFVEIINTPYMNIPTRELEGAGKHQLQNKNGFLHRMPGANGIKTGFTSKAGYCFVGSA 235
Query: 233 IQGDQSLIAVIL---GALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNL 285
+G+ +LI V L G+ + + +++ GF N ++
Sbjct: 236 TKGNMTLIGVSLGNFGSAGKERKYTDVKTMIEHGFNNYKMYTLVDKEQILDNIAIKNGKE 295
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
E V + K E E
Sbjct: 296 EEVKLVAKERVSIPLTADEMEKVTLSITKPDEVD-APVE 333
>gi|229917441|ref|YP_002886087.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Exiguobacterium sp. AT1b]
gi|229468870|gb|ACQ70642.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Exiguobacterium sp. AT1b]
Length = 415
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 71/354 (20%), Positives = 140/354 (39%), Gaps = 20/354 (5%)
Query: 1 MR-----QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ L ++ + + A L+D TG V+ D PAS
Sbjct: 1 MKARYFIILLTVVFVIQTMLPSAASAAAPKVDAASAMLVDVTTGQVLFAKQEDSMLQPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLI 112
+TKLMTA++ ++ K T IT S A + P T+ +
Sbjct: 61 ITKLMTAFLTREAIEAGKLSWTQEITPSDAALALTRKPGLARIPLLNKPYTVKELYDAAL 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH------GHYTT 166
++SAN+ AV + E++ +E+ FV+ MN + LG++ T F NA G+ + T+
Sbjct: 121 IRSANEAAVTLGEAVSGSEEAFVKEMNRRADELGMTQTTFANASGLDSESAGLPGDNLTS 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT----FLGADGMKTGFTC 222
A+D+ L+ T +P+ + + +++ G ++ TN + + G G KTG T
Sbjct: 181 AKDLMKLAIAYLTTYPEVLDVTKRAYVDVDGVRFDATNRMLANRDLAYPGMLGFKTGTTN 240
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+G+ + + + +++++V+LGA R + +L + + +
Sbjct: 241 EAGYCFIGVSTRDGRTVLSVVLGATSDEGRYAATKALHDYAYADFVMTPILRMGETISKM 300
Query: 283 QNLS-NEVPNISEEVCTTQKEIINYNTQMKEAK-DKESHFIDFEKITLLKNKIT 334
+S E ++ + ++ + E + D + T
Sbjct: 301 ATVSQGEEEQVAVRTTNDFEVLVEKGRPVPEPEYDLLDLEAPIKADTQAGMVTI 354
>gi|47568352|ref|ZP_00239054.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
gi|47555045|gb|EAL13394.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
Length = 317
Score = 151 bits (381), Expect = 1e-34, Method: Composition-based stats.
Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G VI + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEIDAKAAMIIDASNGDVIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQESDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTKGKTKRFTETNKLMSYAF 313
>gi|327472301|gb|EGF17732.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK408]
Length = 422
Score = 151 bits (380), Expect = 1e-34, Method: Composition-based stats.
Identities = 65/375 (17%), Positives = 134/375 (35%), Gaps = 41/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + + +D +G ++ E + P S+T L+
Sbjct: 1 MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + + ++ S+N
Sbjct: 61 TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRYKVKDLIAASLMSSSN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FVQ M K G++ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVQMMKAKIKEWGITDATIVNSTGLNTLLLEYATEETEYSASAS 180
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-- 211
+ +A D+A++S + DFPQ +I G N N+ +
Sbjct: 181 TAKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQPNF 240
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFY 265
G DG+K G + G + VA+ + +I V+L D R +ASL++
Sbjct: 241 RSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLNVDQTDGDPYARFVATASLMNYVSQ 300
Query: 266 NKTDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N T + N S++ ++ +++ + +++
Sbjct: 301 NFTQTTIVAEGEAYNKSKSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGF 360
Query: 320 FIDFEKITLLKNKIT 334
+K T L
Sbjct: 361 QAPLKKNTELGTLTY 375
>gi|332365487|gb|EGJ43247.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK1059]
Length = 422
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 63/375 (16%), Positives = 131/375 (34%), Gaps = 41/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + + +D +G ++ E + P S+T L+
Sbjct: 1 MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + + ++ S+N
Sbjct: 61 TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRYKVKDLIAASLMSSSN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FV+ M K G+ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVEMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASAS 180
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGT 209
+ +A D+A++S + DFPQ +I G N N+
Sbjct: 181 TSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNF 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFY 265
G DG+K G + G + VA+ + +I V+L D R +ASL++
Sbjct: 241 RSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQ 300
Query: 266 NKTDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N T + N ++ ++ +++ + +++
Sbjct: 301 NFTQTTIVAEGEAYNKSKSTVIDGKQKTVPAVARKDFTIIERIANQAEHKVEFSTNEKGF 360
Query: 320 FIDFEKITLLKNKIT 334
+K T L
Sbjct: 361 QAPLKKNTELGTLTY 375
>gi|229160966|ref|ZP_04288955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus R309803]
gi|228622534|gb|EEK79371.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus R309803]
Length = 317
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 75/259 (28%), Positives = 128/259 (49%), Gaps = 12/259 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P I ++D + G VI +N + + PAS++K+MTAY++ + K
Sbjct: 55 PPKYIPPEINAKAAIVIDASDGDVIYQNNENEAFAPASMSKMMTAYLLLESVHNGKVRWE 114
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FVQ
Sbjct: 115 DPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFVQL 174
Query: 138 MNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 175 MNAKAKQLEMSEYAKFANASGLQEPDGSETKMTAADVAKLAYNLIKDYPEILEVTHLRQS 234
Query: 194 E--------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ + N N G DG+KTGFT ++G+ +A QGD +I V++G
Sbjct: 235 QLAFNNTTVTNTNEMLNENNKSLHIEGMDGLKTGFTDSAGYCFTGTAKQGDTRIITVVMG 294
Query: 246 ALDRNTRNKVSASLLSMGF 264
+ R + L++ GF
Sbjct: 295 TSGKAKRFTETNKLMTYGF 313
>gi|251796370|ref|YP_003011101.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
sp. JDR-2]
gi|247543996|gb|ACT01015.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
sp. JDR-2]
Length = 393
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 80/293 (27%), Positives = 123/293 (41%), Gaps = 19/293 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
+R+ + + A L F + L+D +G ++ D A
Sbjct: 6 LRRIGIALWAASLIWGTSFTASVYAAPNPYHTSANGSALVDVKSGRILYSENGDQSMRIA 65
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTK+MTA V K L+ + S A S+ + G MTL N L L+++
Sbjct: 66 SLTKIMTAIVAIEHGK-----LSERVKTSSRAVGKEGSSIYLQLGEEMTLLNMLYGLMLR 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND A AIAE + +E+ FV MN ++ LGL+ T F N HG+ GHY++A D+A L+
Sbjct: 121 SGNDAATAIAEHVGGSEEGFVHLMNEKAEMLGLTHTQFKNPHGLDVEGHYSSANDLAKLT 180
Query: 175 WRIKTDF----PQYMHYFQIKGLEIKG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ + K + N N + + GADG+KTG+T + +V
Sbjct: 181 AYALRNPVFAEIVSTKVKSVPNPHEKWQYSWTNKNKMLAMYEGADGVKTGYTKKALRCLV 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+SA + Q L AV L D +L GF + + +
Sbjct: 241 SSATRDGQQLAAVTLNDRDD---WVDHRQMLDWGFKHYPLMEVASKGQTIAGY 290
>gi|323127166|gb|ADX24463.1| putative D,D-carboxypeptidase, penicillin-binding protein
[Streptococcus dysgalactiae subsp. equisimilis ATCC
12394]
Length = 415
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 74/378 (19%), Positives = 149/378 (39%), Gaps = 42/378 (11%)
Query: 1 MRQFLVIIAMAMLSNIF--PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++ ++ + + + L+ + +++ ++G V+ E P ASLTK
Sbjct: 6 IKRLAILFFVVLACSGLGKTVLAADFQVGAEHAIVVEVDSGRVLYEKDAKTPDAIASLTK 65
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKS 115
L+TAY+V + + L+ + +S A ++ T ++ + L+ +V S
Sbjct: 66 LVTAYLVLDKVNSGQLQLSDQVNLSDYAFELTTDSSLSNVPFDQKTYSVQDLLEATLVAS 125
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------H 161
+N A+A+AE + +E FV M G+++ +NA G+
Sbjct: 126 SNSAAIALAEKVAGSEPNFVAQMRAQLSRWGITSGKILNASGLPNEVLKDHRYPGSALEE 185
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMK 217
+ +A+D+AI++ + DFP+ + + ++ G + N + G DG+K
Sbjct: 186 ENMLSAQDVAIVTMHLLEDFPEILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLK 245
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKI 273
TG T +G +V ++I+ LI VIL A NTR + + LL RK +
Sbjct: 246 TGTTDLAGHCLVVTSIENGMRLITVILNADGSDKNQNTRFEQANHLLDYVAKRYHRRKIL 305
Query: 274 NYI----IKDFYQQNLSNEV--PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ F N + + +++V + +S + K
Sbjct: 306 KKGSLMTERPFSVVNGTAQTLSTYAAKDVTLVLGTDELAPRPEQFVVSTDSLLVPIAKGE 365
Query: 328 LL---------KNKITKK 336
++ + KK
Sbjct: 366 VVAYLTSPRIAGERYLKK 383
>gi|301053509|ref|YP_003791720.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
gi|300375678|gb|ADK04582.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
anthracis str. CI]
Length = 317
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I ++ + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNEALYIEGIDGLKTGFTDSAGYCFTGTAKQGDIRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L++ F
Sbjct: 293 MGTKGKTKRFTETNKLMTYAF 313
>gi|229150211|ref|ZP_04278433.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1550]
gi|228633330|gb|EEK89937.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1550]
Length = 317
Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNAAVALAEHMAKSEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313
>gi|229121111|ref|ZP_04250348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
gi|229183764|ref|ZP_04310981.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
gi|228599613|gb|EEK57216.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
gi|228662230|gb|EEL17833.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
Length = 357
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 76/308 (24%), Positives = 121/308 (39%), Gaps = 13/308 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ ++G V+ P AS+TK+MTA + K K + +S
Sbjct: 12 NVSARNAVLMEQHSGRVLYGKAEHEPQKIASITKIMTALLAAESGKMK-----ERVLVSN 66
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K G + L++ + L+++S ND A IAE++ + + FV MN +K
Sbjct: 67 EAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQ 126
Query: 145 LGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ THF N HG+ HY++A DMA+L+ + + F K + YP
Sbjct: 127 IGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWK 185
Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + A G KTGFT +G +V +A + LI V L A +L
Sbjct: 186 NKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSASSD---WDDHMNLF 242
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
GF K + + E + +K DK +
Sbjct: 243 DKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSFSVPLTEEEKKSVVLKVELDKSAKL 302
Query: 321 IDFEKITL 328
+D K+
Sbjct: 303 VDGVKVGK 310
>gi|270292858|ref|ZP_06199069.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M143]
gi|270278837|gb|EFA24683.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. M143]
Length = 414
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 68/354 (19%), Positives = 137/354 (38%), Gaps = 31/354 (8%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ I + + ++ TG ++ E + P AS+TK++T Y+V+ L++
Sbjct: 14 FGTAIPTVSAQDFDVAAKHAIAVEATTGKILYEKDANQPVEIASITKILTVYLVYEALEQ 73
Query: 72 KKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
L+TP+ IS + +++ + T++ L+ +V SAN A+A+AE +
Sbjct: 74 GTISLSTPVDISDYPYQLTTNSEASNVPMEARKYTVEQLLEATLVSSANSAAIALAEKIA 133
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILS 174
+EK FV M G+ +N G+ + +A D+AI++
Sbjct: 134 GSEKDFVDKMRAKLLEWGIKDATIVNTTGLNNETLGNNIYPGSKKDEENKLSAYDVAIIA 193
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVA 230
+ D+PQ + + G + +TN+ + G DG+KTG T +G + V
Sbjct: 194 RNLIRDYPQVLEITKKSSSTFAGMEIHSTNYMLEGMPAYRGGVDGLKTGTTDKAGASFVG 253
Query: 231 SAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYI------IKDF 280
+ + +I V+L A + R ++SLL N + +
Sbjct: 254 TTTEKGMRIITVVLNADQQNSNPYARFTATSSLLDYITSNYALKTIVQKGEAYKDSKVSV 313
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+V Q+ ++ ++ ++ E T++ +
Sbjct: 314 LDGKEDTVTAVAKSDVTVIQRLGSRASSSLQFTPKTKAETAPLEAETVVGHLTY 367
>gi|228933281|ref|ZP_04096137.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228826442|gb|EEM72219.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 317
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I ++ + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L++ F
Sbjct: 293 MGTEGKTKRFTETNKLMTYAF 313
>gi|49481177|ref|YP_036116.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49332733|gb|AAT63379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 317
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 73/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I ++ + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G D+ R + L++ F
Sbjct: 293 MGTEDKTKRFTETNKLMTYAF 313
>gi|229090965|ref|ZP_04222189.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-42]
gi|228692366|gb|EEL46101.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-42]
Length = 317
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 128/261 (49%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I ++ + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QG+ +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGNTRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L++ F
Sbjct: 293 MGTKGKTKRFTETNKLMTYAF 313
>gi|52143467|ref|YP_083362.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
gi|118477407|ref|YP_894558.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
Hakam]
gi|196036868|ref|ZP_03104255.1| beta-lactamase [Bacillus cereus W]
gi|196041913|ref|ZP_03109201.1| beta-lactamase [Bacillus cereus NVH0597-99]
gi|196047003|ref|ZP_03114222.1| beta-lactamase [Bacillus cereus 03BB108]
gi|218903102|ref|YP_002450936.1| beta-lactamase [Bacillus cereus AH820]
gi|225863912|ref|YP_002749290.1| beta-lactamase [Bacillus cereus 03BB102]
gi|228914571|ref|ZP_04078180.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228927044|ref|ZP_04090110.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228945594|ref|ZP_04107944.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229121530|ref|ZP_04250757.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 95/8201]
gi|229184187|ref|ZP_04311396.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BGSC 6E1]
gi|300117552|ref|ZP_07055339.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
SJ1]
gi|51976936|gb|AAU18486.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
gi|118416632|gb|ABK85051.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
Hakam]
gi|195990521|gb|EDX54502.1| beta-lactamase [Bacillus cereus W]
gi|196022107|gb|EDX60795.1| beta-lactamase [Bacillus cereus 03BB108]
gi|196027285|gb|EDX65904.1| beta-lactamase [Bacillus cereus NVH0597-99]
gi|218535102|gb|ACK87500.1| beta-lactamase [Bacillus cereus AH820]
gi|225788359|gb|ACO28576.1| beta-lactamase [Bacillus cereus 03BB102]
gi|228599302|gb|EEK56913.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus BGSC 6E1]
gi|228661994|gb|EEL17607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 95/8201]
gi|228814112|gb|EEM60383.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228832779|gb|EEM78350.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228844890|gb|EEM89932.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|298725087|gb|EFI65742.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
SJ1]
Length = 317
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/261 (27%), Positives = 128/261 (49%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I ++ + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L++ F
Sbjct: 293 MGTKGKTKRFTETNKLMTYAF 313
>gi|218233888|ref|YP_002366673.1| beta-lactamase [Bacillus cereus B4264]
gi|218161845|gb|ACK61837.1| beta-lactamase [Bacillus cereus B4264]
Length = 317
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ IS A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 113 WEDPVKISAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313
>gi|125718743|ref|YP_001035876.1| penicillin-binding protein 3 [Streptococcus sanguinis SK36]
gi|125498660|gb|ABN45326.1| Penicillin-binding protein 3, putative [Streptococcus sanguinis
SK36]
Length = 419
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 65/372 (17%), Positives = 132/372 (35%), Gaps = 38/372 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + + +D +G ++ E + P S+T L+
Sbjct: 1 MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + + ++ S+N
Sbjct: 61 TVYLVYEAIDRGDLTADTYVDISDYAYNLTANPNISNVPLEAKRYKVKDLIAASLMSSSN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FVQ M K G+ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETDYTSTAK 180
Query: 160 ---QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGTFLG 212
+ +A D+A++S + DFPQ +I G N N+ G
Sbjct: 181 KSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSG 240
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKT 268
DG+K G + G + VA+ + +I V+L D R +ASL++ N T
Sbjct: 241 VDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQNFT 300
Query: 269 DRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
+ N S++ ++ +++ + +++
Sbjct: 301 QTTIVAEGEAYNKSKSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGFQAP 360
Query: 323 FEKITLLKNKIT 334
+K T L
Sbjct: 361 LKKNTELGTLTY 372
>gi|319898924|ref|YP_004159017.1| Penicillin-binding protein [Bartonella clarridgeiae 73]
gi|319402888|emb|CBI76439.1| Penicillin-binding protein [Bartonella clarridgeiae 73]
Length = 394
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 83/337 (24%), Positives = 141/337 (41%), Gaps = 22/337 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M + L ++ + IF AE + D NT ++ + D + PASLTK
Sbjct: 1 MHRLLRVLFSLIWILIFNEQGQAENFQTSASQLLIFDDNTSTILFKKQSDVAFFPASLTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIV 113
LMTA +VF LK+ +S+NA + K+ + +++ + L+ L++
Sbjct: 61 LMTAEIVFHQLKKGFLNKEQKFKVSENAWRKGGAPSGTTTMFAKEKTEISVFDLLRGLVI 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
+ ND A+ +AE + E F + MN +K LGL +HF+NA G + G + T DM L
Sbjct: 121 VNGNDAAITLAEGIAGNEANFAKLMNKRAKTLGLLNSHFVNATGFPEEGQFITLNDMITL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW--AVGTFLGADGMKTGFTCASGFNIVAS 231
+ I ++P Y + N N + T + +G+ G++ +GF+ V S
Sbjct: 181 ARHIAHEYPDYYALYSEPDFTWNKITQHNKNPLISQVTDVKIEGLGFGYSEETGFSTVIS 240
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY---QQNLSNE 288
A + Q L + G + R K +L N +K Y + N
Sbjct: 241 AYKNQQRLFLAVSGLQNNKERTKEIKRILQWSLTNFDLKKIFTKGEIVGYASVYGGVRNS 300
Query: 289 VPNI----------SEEVCTTQKEIINYNTQMKEAKD 315
VP + +++ K II Y+ +K +
Sbjct: 301 VPLVVQEPISFMLSNKKTLNDVKAIIRYHGPLKAPIN 337
>gi|81427894|ref|YP_394893.1| D-alanyl-D-alanine carboxypeptidase precursor [Lactobacillus sakei
subsp. sakei 23K]
gi|78609535|emb|CAI54581.1| D-alanyl-D-alanine carboxypeptidase precursor [Lactobacillus sakei
subsp. sakei 23K]
Length = 428
Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/384 (16%), Positives = 131/384 (34%), Gaps = 49/384 (12%)
Query: 1 MRQFLVIIAMAMLSNI------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M L++ +A+ ++ + A +D +G V+ E D A
Sbjct: 1 MTGLLLVTPVAVATSATQQGVQAATATSAPQVDASAAIAIDPQSGQVLYEKNADQVLPIA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPIT----ISKNASEYPPSNSTFKKGSTMTLDNALKL 110
S+TK++TAYVV +K+ K I K + + +N + ++ +
Sbjct: 61 SMTKMITAYVVLDQIKQGKLKWNQTTKPDAAIYKLSQDKELTNVPLQADKAYSVRELYQA 120
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------ 158
+++ SAND A+ +A + ++K FV M G+ + G+
Sbjct: 121 MLIASANDAAMMLANLVAGSQKNFVDLMRQQVSQWGIKDAKLYSVSGLNNQYLTGETYPG 180
Query: 159 --VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-----KYPNTNWA----- 206
+ +A ++AI++ + FP+ + + K K N
Sbjct: 181 SAADAENEMSASEVAIVAQHLLKTFPEVLETTKQTAFTFGPKTIDETKMATWNLMLPGQN 240
Query: 207 -VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--RNKVSASLLSMG 263
DG+KTG T +G +A + Q ++ V++ A + R + ++
Sbjct: 241 NAPKDYVVDGLKTGTTDKAGDCFTGTATKDGQRILTVVMHANGSDKGRRFIETNKVMQYV 300
Query: 264 FYNKTDRKKINYI-------IKDFYQQNLSNEVPNISEEVCTTQKEI-----INYNTQMK 311
F N + + D + + + ++++ Q+
Sbjct: 301 FDNWQQTQLVKKGATIKPFATADVKYGRTKTVALETPQAIAMWVPKGTQVANVDWDYQVV 360
Query: 312 EAKDKESHFIDFEKITLLKNKITK 335
+ K +K ++ K
Sbjct: 361 QGGQKRQLTAPVKKAAVIGKVTPK 384
>gi|228477772|ref|ZP_04062400.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus salivarius
SK126]
gi|228250464|gb|EEK09678.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus salivarius
SK126]
Length = 417
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 78/366 (21%), Positives = 143/366 (39%), Gaps = 35/366 (9%)
Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ +++IA+ +L P L+ +T + ++ TG V+ E P A
Sbjct: 3 MKKLQHIIMIALILLGLATPALAQEQTDDFNVSAKHAIAIEATTGKVLYEKDATTPDGVA 62
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLL 111
S+TK++TAY+V+ + + K T + IS ++ T+ L
Sbjct: 63 SMTKILTAYMVYKAVDQGKITWDTEVDISDYPFNLTVDSEVSNVPLDSRKYTVKQLLDAT 122
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
++ SAN A+A+AE + +E FV M K ++ NA G+
Sbjct: 123 LISSANSAAIALAEKISGSESAFVDAMTAQLKEWSITDAKLYNASGLNNKYLGDNRYPGS 182
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA----VGTFLG 212
+ +A D+AI++ + D+PQ + + + K N+ G
Sbjct: 183 KPDDENSMSALDVAIIADHLIKDYPQVLEITKQTETDFEGDNKLTTHNYMLEGQDNYREG 242
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNTRNKVSASLLSMGFYNKT 268
DG+KTG T +G + VA + + SLI V++ G D R + LL N
Sbjct: 243 VDGLKTGTTELAGASFVAHSNENGMSLITVVMNADNGGEDEAARFTATNELLDYVTQNWE 302
Query: 269 DRKKINYI--IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK-ESHFIDFEK 325
+ +K + + IS ++ + I N++ K K ++ +K
Sbjct: 303 IKTLNTKGQIVKKNDIKVADGDRQTISAKLESDLTVIQKINSKNDAVKIKAKTITAPIKK 362
Query: 326 ITLLKN 331
+
Sbjct: 363 GDTIGT 368
>gi|323350405|ref|ZP_08086068.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
VMC66]
gi|322123342|gb|EFX95020.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
VMC66]
Length = 422
Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/375 (17%), Positives = 132/375 (35%), Gaps = 41/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + + +D +G ++ E + P S+T L+
Sbjct: 1 MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + + ++ S+N
Sbjct: 61 TVYLVYEAIDRGNLTADTYVDISDYAYNLTSNPNISNVPLEAKRYKVKDLIAASLMSSSN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FVQ M K G++ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVQMMKAKLKEWGITDATIVNSTGLNTLLLEYATEETEYSASAS 180
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGT 209
+ +A D+A++S + DFPQ +I G N N+
Sbjct: 181 TSKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSNF 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFY 265
G DG+K G + G + VA+ + +I V+L D R +ASL++
Sbjct: 241 RSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQ 300
Query: 266 NKTDRKKINYIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N T + S++ ++ +++ + +++
Sbjct: 301 NFTQTTIVAEGEAYNKSHSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGF 360
Query: 320 FIDFEKITLLKNKIT 334
+K T L
Sbjct: 361 QAPLKKNTELGTLTY 375
>gi|310644848|ref|YP_003949607.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Paenibacillus
polymyxa SC2]
gi|309249799|gb|ADO59366.1| Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
polymyxa SC2]
Length = 313
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 74/281 (26%), Positives = 123/281 (43%), Gaps = 21/281 (7%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
V+I + ++ L L+D +TG ++ + D P A+++KLMT +V
Sbjct: 15 VLIILIFITLGPRLLIGKPNVDADAAVLMDMHTGELLMDVNGDKPMPSANMSKLMTELLV 74
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
++ + + IS+ AS N + + G MT+ + ++V SAND AVA+AE
Sbjct: 75 LEDIRTGRLGWNDEVRISRYASTVGGVNLSLRYGERMTVSELFQSMVVYSANDAAVALAE 134
Query: 126 SLCKTEKKFVQHMNNTSKNLG-LSATHFMNAHGV------VQH------GHYTTARDMAI 172
E FV+ MN + +G + F NA G H TA D A
Sbjct: 135 RSSGNEYAFVKRMNEKAAQIGLSPDSRFSNASGAGQSELGPNHPKDIRGETKMTASDTAK 194
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV--------GTFLGADGMKTGFTCAS 224
L+ + T P+ + +E+K K +N ++ G DG+K G+T +
Sbjct: 195 LASYLITSHPEILRTSSRTQMELKDKGIYISNTNWMLPSLAGPYSYAGTDGLKAGYTSDA 254
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
G+ +A Q + L+AV+LGA + R + + L GF
Sbjct: 255 GYCFTGTAEQHGKRLVAVVLGAPSKEERFEQTRKLFDYGFS 295
>gi|295110604|emb|CBL24557.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
Length = 439
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 71/329 (21%), Positives = 122/329 (37%), Gaps = 18/329 (5%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
A+ ++ A L+D +TG ++ + D PAS TKLMT V
Sbjct: 36 AAVATDSIANWPAAPAVTSETAVLMDADTGAILYDKGMDEYRYPASTTKLMTLLVAIENS 95
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K + T + + SN + G TMT+ + +KSAN++ IAE +
Sbjct: 96 SPKDVVTFTETGV--RDVTWDSSNINAQLGETMTMKDCWFAAYIKSANEVCAQIAEYVGG 153
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHY 187
TE FV+ MN +K LG + THF+NA G+ HY+ A D+A + + F + +
Sbjct: 154 TEANFVEMMNQKAKKLGCTHTHFVNASGLPDENHYSCAEDLAKIMRAGLKNARFRKVLET 213
Query: 188 FQIKGLEIKGKKYPNTNWAVG--------TFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + V + G G KTGF+ + + +A + ++
Sbjct: 214 VSYTIPATNLSAARSLHTHVPLLAKESSLYYEGCIGGKTGFSTEAQNCLAVAAERNGRTY 273
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKK------INYIIKDFYQQNLSNEVPNIS 293
IAV + D S +L F + + + + S + +
Sbjct: 274 IAVTMRDTDLGINCADSTALFDYAFNSFDSIEVDGKAMTVPKGVTAADLTMESKQKGKKT 333
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFID 322
Q + + Y T + +
Sbjct: 334 LNQYYYQGQFVGYVTVKDTPSPEPAQEAK 362
>gi|52143878|ref|YP_082950.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
gi|51977347|gb|AAU18897.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
Length = 374
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 76/308 (24%), Positives = 121/308 (39%), Gaps = 13/308 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ ++G V+ P AS+TK+MTA + K K + +S
Sbjct: 29 NVSARNAVLMEQHSGRVLYGKAEHEPQKIASITKIMTALLAAESGKMK-----ERVLVSN 83
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K G + L++ + L+++S ND A IAE++ + + FV MN +K
Sbjct: 84 EAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQ 143
Query: 145 LGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ THF N HG+ HY++A DMA+L+ + + F K + YP
Sbjct: 144 IGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWK 202
Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + A G KTGFT +G +V +A + LI V L A +L
Sbjct: 203 NKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSASSD---WDDHMNLF 259
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
GF K + + E + +K DK +
Sbjct: 260 DKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSFSVPLTEEEKKSVVLKVELDKSAKL 319
Query: 321 IDFEKITL 328
+D K+
Sbjct: 320 VDGVKVGK 327
>gi|52839376|emb|CAH57481.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
gi|52839378|emb|CAH57482.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
Length = 389
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 69/343 (20%), Positives = 135/343 (39%), Gaps = 31/343 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
T + ++ NTG ++ E P AS+TKL+T Y+V+ L+ L+TP+ IS
Sbjct: 1 FTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSITLSTPVDIS 60
Query: 84 KNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ +++ + T++ L+ +V SAN A+A+AE + +EK FV M
Sbjct: 61 DYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSANSAAIALAEKIAGSEKDFVDMMRA 120
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
G+ +N G+ + +A D+AI++ + +PQ +
Sbjct: 121 KLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLIKKYPQVLE 180
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ +TN+ + G DG+KTG T +G + V + ++ +I V
Sbjct: 181 ITKKPSSTFARMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESFVGTTVEKGMRVITV 240
Query: 243 ILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYII------KDFYQQNLSNEVPNI 292
+L A + R ++SL+ T RK +
Sbjct: 241 VLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQDSKAPVQDGKEDTVTAVA 300
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E++ ++ + ++ D ++ E T++ + +
Sbjct: 301 PEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTVVGHLTYE 343
>gi|332359810|gb|EGJ37624.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK1056]
Length = 422
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/375 (17%), Positives = 132/375 (35%), Gaps = 41/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + + +D +G ++ E + P S+T L+
Sbjct: 1 MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + + ++ S+N
Sbjct: 61 TVYLVYEAIDRGDLTADTYVDISDYAYNLTANPNISNVPLEAKRYKVKDLIAASLMSSSN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FVQ M K G+ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASAS 180
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGT 209
+ +A D+A++S + DFPQ +I G N N+
Sbjct: 181 TSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNF 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFY 265
G DG+K G + G + VA+ + +I V+L D R +ASL++
Sbjct: 241 RSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQ 300
Query: 266 NKTDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N T + N S++ ++ +++ + +++
Sbjct: 301 NFTQTTIVAEGEAYNKSKSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGF 360
Query: 320 FIDFEKITLLKNKIT 334
+K T L
Sbjct: 361 QAPLKKNTELGTLTY 375
>gi|56808710|ref|ZP_00366431.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Streptococcus
pyogenes M49 591]
Length = 401
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 73/341 (21%), Positives = 138/341 (40%), Gaps = 31/341 (9%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
L+ + +++ ++G V+ E P ASLTKL+TAY+V +K + L+
Sbjct: 13 LAADFQVGAEHAIVVEADSGRVLYEKDAKTPDAIASLTKLVTAYLVLDKVKSGQLQLSDQ 72
Query: 80 ITISKNASEYPPSN---STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ +S A E + T ++ + L +V S+N A+A+AE + +E FV
Sbjct: 73 VNLSDYAFELTKDRSLSNVPFDKKTYSVQDLLTATLVASSNSAAIALAEKVAGSELHFVN 132
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYTTARDMAILSWRIKTDFP 182
M + G+++ +NA G+ + +A+D+AI++ + DFP
Sbjct: 133 QMREQLSHWGITSGKILNASGLPNEVLKDHRYPGSALEEENMLSAQDVAIVTMHLLEDFP 192
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + ++ G + N + G DG+KTG T +G +V ++I+
Sbjct: 193 EILEITKQTEVDFAGNSIKSFNQLLPGMAKGRAGVDGLKTGTTDLAGHCLVVTSIENGMR 252
Query: 239 LIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKINYI------IKDFYQQNLSNE 288
LI VIL A NTR + + LL RK + +
Sbjct: 253 LITVILNADGSDKNQNTRFEQANRLLDYVARTYCRRKILKKGSLVSERSLPIQDGQVKEL 312
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+++E+V ++ + + S K ++
Sbjct: 313 PISVAEDVTIILQQGEQVPKPKQFMISETSLLAPITKGEVV 353
>gi|327460573|gb|EGF06908.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK1]
Length = 422
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/375 (17%), Positives = 132/375 (35%), Gaps = 41/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + + +D +G ++ E + P S+T L+
Sbjct: 1 MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + + ++ S+N
Sbjct: 61 TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRYKVKDLIAASLMSSSN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FVQ M K G+ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASAS 180
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGT 209
+ +A D+A++S + DFPQ +I G N N+
Sbjct: 181 TFKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSNF 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFY 265
G DG+K G + G + VA+ + +I V+L D R +ASL++
Sbjct: 241 RSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVDQTDGDPYARFVATASLMNYVSQ 300
Query: 266 NKTDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N T + N S++ ++ +++ + +++
Sbjct: 301 NFTQTTIVAEGEAYNKSKSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGF 360
Query: 320 FIDFEKITLLKNKIT 334
+K T L
Sbjct: 361 QAPLKKNTELGTLTY 375
>gi|311030756|ref|ZP_07708846.1| D-alanyl-D-alanine carboxypeptidase [Bacillus sp. m3-13]
Length = 384
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 73/347 (21%), Positives = 136/347 (39%), Gaps = 22/347 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFL----SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+R+ I +++L + L++ +G +I E AS+
Sbjct: 4 IRKMFSIALVSLLIFSICIPHNVHAEQVGVSARNAVLIEQESGRIIYEKDAHDKQRIASI 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K L + +S+ A S+ K G + L++ + L+++S
Sbjct: 64 TKVMTAILAIESGK-----LDEIVKVSEKAVRAEGSSLYLKPGEKIKLEHLVYGLMLRSG 118
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSW 175
ND AVAIAE + + + FV MN + LG++ T F N HG+ H HY++A DMA+L+
Sbjct: 119 NDSAVAIAEHVGGSLEGFVFMMNEKAAELGMTNTEFANPHGLDDHENHYSSAYDMALLTR 178
Query: 176 RIKTDFP-------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ + G G + A G KTG+T + +
Sbjct: 179 YAMENDKFKEVAGTKVYRAPAAPGESWDRSWTNKHRLVTGMYQYATGGKTGYTKRAKRTL 238
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ +A + +IAV L D K + + F + D + +
Sbjct: 239 ITTASKEGLDVIAVTLNGPDD---WKDHIYMFNRAFVDYKLYDIAEKGELDNVKDDFYKG 295
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++S ++ + N ++K E+ D++ + + +
Sbjct: 296 KVSLSRDIKFPMTQKERENVRIKVT--LETPKKDWKDEGNVPEVVGE 340
>gi|229029678|ref|ZP_04185753.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1271]
gi|228731620|gb|EEL82527.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH1271]
Length = 317
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 72/261 (27%), Positives = 129/261 (49%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D++ G +I ++ + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEIDAKAAMIIDSSNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKMSVKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QRMNEKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QG+ +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGNTRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTKGKTKRFTETNKLMSYAF 313
>gi|227872772|ref|ZP_03991092.1| conserved hypothetical protein [Oribacterium sinus F0268]
gi|227841371|gb|EEJ51681.1| conserved hypothetical protein [Oribacterium sinus F0268]
Length = 464
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 74/352 (21%), Positives = 141/352 (40%), Gaps = 25/352 (7%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAE-----TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+ ++++ +++A ++D TG V+ E D PAS+T
Sbjct: 11 RIFLLLSFCFFILFHSVVAMAASWPTADLTAESAIVVDAETGAVLYEKNGDVREYPASIT 70
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVK 114
K+MTA VV L +T S +A SN+ ++G +T+++ L L++K
Sbjct: 71 KVMTALVVLEHA-----SLEDKVTFSHDAVYNVDRGSSNAQIEEGDVLTVNDCLHALLLK 125
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAN+ A A+AE + + + F + MN +K LG + THF N G+ HYTTARDMA++
Sbjct: 126 SANEAANALAEHVAGSREAFAEMMNEKAKELGCTGTHFQNPSGLQDENHYTTARDMALIG 185
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG-----------TFLGADGMKTGFTCA 223
+ + K+ P N KTG+T
Sbjct: 186 MAAFQNKAFLEIEKNLSHTLGNLKRLPEGNTIYMEHKMMLSNTKFYDKRVVAGKTGYTQI 245
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
+G +++ A + ++ V+L + + + +LL + F ++ + +
Sbjct: 246 AGNTLISLAEDQGRKVVTVVLKDKNP-SHYTDTKALLDLAFSETENQTLGEHPGALEALR 304
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
I+EE + + + ++D + + + + + K
Sbjct: 305 KELVSAGKITEENKIHFLDTVKISLPKGASQDGLQYVFTDIEGDVPASALGK 356
>gi|228900575|ref|ZP_04064797.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
IBL 4222]
gi|228859058|gb|EEN03496.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
IBL 4222]
Length = 309
Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 45 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 104
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 105 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 164
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 165 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 224
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 225 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 284
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 285 MGTSSKTKRFTETNKLMSYAF 305
>gi|153855278|ref|ZP_01996444.1| hypothetical protein DORLON_02458 [Dorea longicatena DSM 13814]
gi|149752277|gb|EDM62208.1| hypothetical protein DORLON_02458 [Dorea longicatena DSM 13814]
Length = 452
Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 73/339 (21%), Positives = 126/339 (37%), Gaps = 34/339 (10%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
L+D ++G V+ D AS TK+MT + L+E I
Sbjct: 79 EPAELYARSAVLMDADSGRVLFGKDTDVVRPMASTTKIMTCILALESLREH---PDQTIE 135
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+S A+ P + +KG + + L L+++S ND AVA+AE + + ++F + MN
Sbjct: 136 VSDQAASQPKVHLGMQKGEVFYIKDLLYSLMLESHNDSAVAVAEGIAGSVEEFAKEMNAK 195
Query: 142 SKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKT---------DFPQYMHYF 188
+ +G THF+ +G+ H TTA D+A + + + Y
Sbjct: 196 AAEIGCKNTHFITPNGLDAEDEGGVHSTTAEDLAKIMRYCIMTSGEKETFLEVTRTKEYQ 255
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ N N + GA KTGFT +G+ V S D++ I +L
Sbjct: 256 FQDADRKRTFSCHNHNAFLDMMDGALSGKTGFTADAGYCYVGSLRWDDRTFIVALLACGW 315
Query: 249 RNT---RNKVSASLLSMGFYNKTDRKKINY--IIKDFYQQNLSNEVP------------- 290
N + K + L+ G + R I + + ++ P
Sbjct: 316 PNNKGYKWKDTRKLMEYGLEHYQYRDIDKKMQIPEIKVAGGVDDKKPYQYCLNVPVKIER 375
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
E ++ +++ AK + EKI +L
Sbjct: 376 PAEENSKILMRDGEELRAKLELAKYWNAPLKKGEKIGML 414
>gi|304391426|ref|ZP_07373368.1| penicillin-binding protein [Ahrensia sp. R2A130]
gi|303295655|gb|EFL90013.1| penicillin-binding protein [Ahrensia sp. R2A130]
Length = 289
Score = 150 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 94/264 (35%), Positives = 136/264 (51%), Gaps = 4/264 (1%)
Query: 1 MRQFLV----IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR ++ + A ++ ++D +G V+ D PASL
Sbjct: 21 MRALVIAALALFATGCTTSSVITAPYEPPTARYAAIVIDAKSGKVLHNTRADAIRFPASL 80
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MT Y+ F L ++ L + I +S A+ P S K G T+ +D AL+ L VKSA
Sbjct: 81 TKMMTMYMAFEALSRRRISLNSEIPVSSYAASKPASKLYLKAGETINVDTALQALAVKSA 140
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND+A A+AE L +E F + M +++LG+ +T F NA G+ TTARDMA LS
Sbjct: 141 NDVATAMAEFLGGSEATFARMMTARARSLGMRSTTFRNASGLPDRLQVTTARDMATLSLA 200
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
++ +PQY HYF KGK N +G GA+G+KTG+T ASGFN+ S + +
Sbjct: 201 LQKRYPQYFHYFGKSTFVWKGKTIRGHNRVLGMLKGANGIKTGYTRASGFNLATSVKRPN 260
Query: 237 QSLIAVILGALDRNTRNKVSASLL 260
+ L+ VILG RN+ LL
Sbjct: 261 KHLVGVILGEDSGKVRNRHMVELL 284
>gi|266622661|ref|ZP_06115596.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
gi|288865598|gb|EFC97896.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
Length = 480
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 73/301 (24%), Positives = 120/301 (39%), Gaps = 33/301 (10%)
Query: 1 MRQFLVII--------AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+ FL I M + P + ++D ++G ++ D P+
Sbjct: 1 MKHFLKKILCWTLISNCFLMTAYAAPAWPAGPDIQAEAGVVIDMDSGAILGGKAYDTPYP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISK----NASEYPPSNSTFKKGSTMTLDNAL 108
PAS+TKL+TA +V K L +T S N + +G +++++ L
Sbjct: 61 PASITKLLTALLVLEHSK-----LDEMVTFSNSAVYNVESDSGNKLNVAEGDQLSVEDCL 115
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L+V S N A A+AE + +++ FV+ MN+ + LG +HF N G+ Y TAR
Sbjct: 116 YSLLVHSCNQAANALAEHVAGSQEAFVKMMNDKAAALGCKDSHFDNPSGLNGDTQYVTAR 175
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGL---------------EIKGKKYPNTNWAVGTFLGA 213
DMA +S + +K E K N + + +
Sbjct: 176 DMAAISRAAFAEPDIIRISAALKHTFPPTINNPEGLTIYAENKLILNTNDSSSQYYYPPV 235
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
G KTG+ +G +V A + + LI+VIL +LL GF + T+
Sbjct: 236 KGGKTGYLLKAGNTLVTYAEKDGKRLISVILKG-SPGQYYLDGKALLEFGFEHFTNYNVA 294
Query: 274 N 274
Sbjct: 295 E 295
>gi|229196199|ref|ZP_04322948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1293]
gi|228587264|gb|EEK45333.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus m1293]
Length = 317
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 69/265 (26%), Positives = 128/265 (48%), Gaps = 12/265 (4%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++ + P I ++D + G +I ++ + + PAS++K+MT Y++ +
Sbjct: 49 LVEKVVPPKYIPPEIDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTVYLLLENVHN 108
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
K P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+E
Sbjct: 109 GKVRWEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSE 168
Query: 132 KKFVQHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHY 187
K FVQ M+ +K +S F NA G+ TA D+A L++ + D+P+ +
Sbjct: 169 KDFVQLMDAKAKQFKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEV 228
Query: 188 FQIKGLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
++ ++ N N G DG+KTGFT ++G+ +A QGD +
Sbjct: 229 THLRQSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRI 288
Query: 240 IAVILGALDRNTRNKVSASLLSMGF 264
I V++G + R + L+S F
Sbjct: 289 ITVVMGTKGKTKRFTETNKLMSYAF 313
>gi|307945901|ref|ZP_07661237.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseibium sp. TrichSKD4]
gi|307771774|gb|EFO30999.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseibium sp. TrichSKD4]
Length = 301
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 86/233 (36%), Positives = 139/233 (59%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+L+ TG + D P PASLTK+MT Y++F + + + L+TP+ +S NA+
Sbjct: 65 RSVLVLNGYTGRELLSENADAPRFPASLTKMMTLYLLFEEVSKGRYTLSTPLNVSANAAS 124
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
PPS K GST+T++ A + L +KSAND+A+A+AE++ +E F + M +K+LGL+
Sbjct: 125 QPPSKIGLKPGSTITVEQAARALAIKSANDVAIAVAENISGSEAAFARKMTQKAKSLGLT 184
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
T F+NA G+ TTARDMA L +K FPQY Y++ + + G+++ TN +G
Sbjct: 185 RTRFVNASGLPNPRQVTTARDMAKLGMALKRRFPQYASYYKARSVTYNGRRFKATNNLIG 244
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
G DG+KTG+ SG+N+VA++ + + L+ V++G + R+ L+
Sbjct: 245 KVAGVDGLKTGYVRLSGYNLVATSRRNGRKLVVVVMGGASESARDTEVTQLIE 297
>gi|229043743|ref|ZP_04191445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH676]
gi|228725596|gb|EEL76851.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus AH676]
Length = 317
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTATDVAQLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313
>gi|229155565|ref|ZP_04283673.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC
4342]
gi|228627883|gb|EEK84602.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC
4342]
Length = 317
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEIDAKAVMIIDASNGDIIYQQNENEAFAPASMSKMMTAYLLLENVHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTKGKTKRFTETNKLMSYAF 313
>gi|304394240|ref|ZP_07376163.1| serine-type D-Ala-D-Ala carboxypeptidase [Ahrensia sp. R2A130]
gi|303293680|gb|EFL88057.1| serine-type D-Ala-D-Ala carboxypeptidase [Ahrensia sp. R2A130]
Length = 412
Score = 150 bits (377), Expect = 4e-34, Method: Composition-based stats.
Identities = 100/316 (31%), Positives = 155/316 (49%), Gaps = 20/316 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR + A L+ L +D ++G V++ W+PASLTKLM
Sbjct: 3 MRSIIAFFLTAWLALPAHALPH---------ISVDLDSGRVLSAQQAFDLWHPASLTKLM 53
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA V F ++ + P+ +S NA + PPS + +G+TM L++ALKLL++KSANDI+
Sbjct: 54 TALVAFRAIESGRLTADHPVIVSDNARKAPPSKMGYSRGTTMRLEDALKLLLIKSANDIS 113
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+AES+ + F Q MN + LG++ ++F+N HG+ TTARDMAIL +
Sbjct: 114 IALAESVSGSVPAFSQAMNAEAARLGMTGSNFVNPHGLHDRRQVTTARDMAILLRVLHKQ 173
Query: 181 FPQYMHYFQ---------IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
+PQY K + + Y + N + F GADG KTGF CASG+N +
Sbjct: 174 YPQYKAMLSTPSLLAPSRTKNGKTIQRVYYSYNLLLERFRGADGFKTGFVCASGYNFAGA 233
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
A + + + A++LG + +R +A L+ GF I + + + N
Sbjct: 234 ATRSGRRIAAIVLGRDGQTSRAVDAAKLIEEGFR--LPTTTGTPITELKPNGAVPSGPRN 291
Query: 292 ISEEVCTTQKEIINYN 307
+ +CT Y
Sbjct: 292 MRSVMCTEAARAARYE 307
>gi|153810801|ref|ZP_01963469.1| hypothetical protein RUMOBE_01185 [Ruminococcus obeum ATCC 29174]
gi|149833197|gb|EDM88279.1| hypothetical protein RUMOBE_01185 [Ruminococcus obeum ATCC 29174]
Length = 393
Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats.
Identities = 71/345 (20%), Positives = 123/345 (35%), Gaps = 30/345 (8%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
++F L+D ++G V+ + + P AS TK+MT + K
Sbjct: 22 SVFASEKSPGNLYALSAVLMDGDSGRVLYQKSGNTPRPNASTTKVMTCILALENGKG--- 78
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ +S NA P G L++ L L+++S ND AVAIAE + + F
Sbjct: 79 --DDYVKVSANAVSQPEVRLGLSIGEQYYLEDLLYSLMLQSHNDSAVAIAECIGGSVDNF 136
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQI 190
MN +K +G THF+ +G+ H+TTA D+A++ +
Sbjct: 137 SAMMNAKAKEIGCKNTHFVTPNGLDAENSGGTHHTTAEDLALIMRYAIHNDVFLKITQTE 196
Query: 191 KG-----LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ + + NTN + G KTG+T +G+ V + + +++ I +LG
Sbjct: 197 EYSFSDLSKKRHFSVHNTNALLHMTDGVLAGKTGYTGDAGYCYVCACQKDNKTFIIALLG 256
Query: 246 ALD---RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ---------QNLSNEVPNIS 293
A +N + + LL+ G N R + S+
Sbjct: 257 AGWPDHKNYKWHDTLELLNYGNSNYEYRSFWQEPELSYIPVENGILNDFGAGSSVYTGGQ 316
Query: 294 EEVCTTQKEIINYNTQMKE----AKDKESHFIDFEKITLLKNKIT 334
V +K + KE + + I
Sbjct: 317 ISVSDNEKNRQILIGSDDRLQYQIRLKEHLSAPVRRGEQIGQIIY 361
>gi|228939114|ref|ZP_04101709.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228958264|ref|ZP_04119992.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228801423|gb|EEM48312.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228820537|gb|EEM66567.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar berliner ATCC 10792]
Length = 309
Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 45 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 104
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 105 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 164
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 165 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 224
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 225 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 284
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 285 MGTSSKTKRFTETNKLMSYAF 305
>gi|229172673|ref|ZP_04300231.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus MM3]
gi|228610805|gb|EEK68069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus MM3]
Length = 317
Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats.
Identities = 73/265 (27%), Positives = 129/265 (48%), Gaps = 12/265 (4%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ + P I ++D + G +I ++ + + PAS++K+MTAY++ +
Sbjct: 49 LAEKVVPPKYIPPEIDAKVAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENIHN 108
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
K P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + KTE
Sbjct: 109 GKVRWEDPVKMSAKAAQTEGARIQVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTE 168
Query: 132 KKFVQHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHY 187
K FVQ MN +K L +S F NA G+ TA D+A L++ + D+P+ +
Sbjct: 169 KDFVQLMNAKAKELKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEV 228
Query: 188 FQIKGLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
++ ++ N N G DG+KTGFT ++G+ +A QGD +
Sbjct: 229 THLRQSQLAFNNINVVSTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRI 288
Query: 240 IAVILGALDRNTRNKVSASLLSMGF 264
I V++G + R + L+S F
Sbjct: 289 ITVVMGTKGKTKRFTETNKLMSYAF 313
>gi|299769193|ref|YP_003731219.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter sp. DR1]
gi|298699281|gb|ADI89846.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter sp. DR1]
Length = 439
Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats.
Identities = 85/314 (27%), Positives = 145/314 (46%), Gaps = 14/314 (4%)
Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS
Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ +K K IT + ++ S K G +++D L LIV
Sbjct: 61 LTKMMVAYIALKEIKAGKLKKEEIITATPVVGVVQWDESQMYLKAGEQISVDQLLAGLIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L
Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPPGITMPDHYTTAHDLSLL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A
Sbjct: 181 GQAVIKETPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240
Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ + L+ ++LG R +++ L+++ + D I +
Sbjct: 241 RPSFSSDLAQRRLLVIVLGTPSAVKRAEIADKLMNLAYTYTRDEVIIPEQKLIAELPVVK 300
Query: 287 NEVPNISEEVCTTQ 300
+ +
Sbjct: 301 STLKMFKVATKQPT 314
>gi|218896938|ref|YP_002445349.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
G9842]
gi|228964967|ref|ZP_04126069.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|218545350|gb|ACK97744.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
G9842]
gi|228794708|gb|EEM42212.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 317
Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313
>gi|229069527|ref|ZP_04202816.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus F65185]
gi|228713666|gb|EEL65552.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus F65185]
Length = 309
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 45 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 104
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 105 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 164
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 165 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLR 224
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 225 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 284
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 285 MGTSSKTKRFTETNKLMSYAF 305
>gi|304407580|ref|ZP_07389232.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
curdlanolyticus YK9]
gi|304343531|gb|EFM09373.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Paenibacillus
curdlanolyticus YK9]
Length = 326
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 68/266 (25%), Positives = 116/266 (43%), Gaps = 23/266 (8%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ L+D NTG I + PAS++KLMT VV ++ K +T
Sbjct: 33 AVPHIEAKSAILIDANTGQTIFAQGANKALPPASMSKLMTELVVLETVRAGKLGWKDQVT 92
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+S A+ + + + G T+ + + V SAND AVA+AE + +E++FV+ MN
Sbjct: 93 VSPYAANVLGAGAGLRNGERHTVKELFESMAVHSANDSAVALAEWIGGSEREFVKLMNEK 152
Query: 142 SKNLGLSATH--------------FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+K +GLS + TARD+A+L+ + +P+ +
Sbjct: 153 AKAIGLSDSTVFANATGLSSSDLAMYAQSAAADGETVMTARDVALLARYMIRSYPEVLTI 212
Query: 188 FQIKGLEIKG-----KKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + TN + G+DG+KTG+T +G+ + +G
Sbjct: 213 TSREAVGLNPGASDDAALRTTNLMLPGERFAYPGSDGLKTGYTERAGYCFTGTTSRGGTR 272
Query: 239 LIAVILGALDRNTRNKVSASLLSMGF 264
LIAV++GA + R + L +GF
Sbjct: 273 LIAVVMGAESADGRFIETERLYDLGF 298
>gi|327462875|gb|EGF09197.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK1057]
Length = 422
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 65/375 (17%), Positives = 131/375 (34%), Gaps = 41/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + + +D +G ++ E + P S+T L+
Sbjct: 1 MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + ++ S+N
Sbjct: 61 TVYLVYEAIDRGDLTADTYVDISDYAYTLTSNPNISNVPLEAKRYKAKDLIAASLMSSSN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FVQ M K G+ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASAS 180
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGT 209
+ +A D+A++S + DFPQ +I G N N+
Sbjct: 181 TSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNF 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFY 265
G DG+K G + G + VA+ + +I V+L D R +ASL++
Sbjct: 241 RSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQ 300
Query: 266 NKTDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N T + N S++ ++ +++ + +++
Sbjct: 301 NFTQTTIVAEGETYNKSNSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGF 360
Query: 320 FIDFEKITLLKNKIT 334
+K T L
Sbjct: 361 QAPLKKNTELGTLTY 375
>gi|258590884|emb|CBE67179.1| putative Serine-type D-Ala-D-Ala carboxypeptidase [NC10 bacterium
'Dutch sediment']
Length = 355
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 80/257 (31%), Positives = 130/257 (50%), Gaps = 18/257 (7%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
F++ E L+D +TG ++ + +PAS TK+MTA ++ + L
Sbjct: 82 FVNDPEALSASSALLMDADTGAILFARHHMERRSPASTTKIMTALLILEEGQ-----LDD 136
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ IS+ A+ + ++G + L + L +++KSAND A+A AE + +E++FV M
Sbjct: 137 KVLISERAAAVSGTGLGLRRGQRVVLRDLLWAILLKSANDAALAAAEHVGGSEEQFVARM 196
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL----- 193
N + +LG+ T F N HG+ HY+TA D+AIL+ + + +
Sbjct: 197 NAKAASLGMQGTQFSNPHGLDHQDHYSTAFDLAILARQALRNPTFARMVQTREAQVAILT 256
Query: 194 -----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+K + N +G F GADG+KTG+T +G +VASA +GD LIAV+L
Sbjct: 257 GRNGSVVKRRVIRTHNQLLGQFSGADGVKTGYTSLAGRCLVASATRGDHQLIAVLLN--- 313
Query: 249 RNTRNKVSASLLSMGFY 265
+ R +A+LL GF
Sbjct: 314 DSRRWVEAAALLEYGFA 330
>gi|168186274|ref|ZP_02620909.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
Eklund]
gi|169295810|gb|EDS77943.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
Eklund]
Length = 375
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 71/358 (19%), Positives = 136/358 (37%), Gaps = 31/358 (8%)
Query: 1 MRQF-----LVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDH 49
M++ ++ I + PF+ E +D+ + V+ E +
Sbjct: 1 MKKLRVVSIILNICLLFNIAFVPFVEAVEPKNKSIYVDARCAIAMDSKSKCVLYEKNSEM 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS TK+MT V + L +S A+ S +KKG ++L L
Sbjct: 61 LVPIASTTKIMTTLVALKY-----GNLDRKFEVSPKAASIRGSKVGYKKGEQISLKELLY 115
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
L+++S ND A+ IAE + + +KF + MN + +G +HF + HG+ HY+TA D
Sbjct: 116 GLMLRSGNDAAITIAEGMSGSVEKFCELMNEYAIEIGAFNSHFESPHGLDSQNHYSTAYD 175
Query: 170 MAILSW----RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+A ++ + + K + Y N N + A+G+KTG+T +G
Sbjct: 176 LARITAKAKENKLFNEIVGVKDVDEKKFGF-TRSYHNINKILYQIPNANGVKTGYTGGAG 234
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285
+V S + D +I V+L R K + + N +K + ++
Sbjct: 235 KCLVTSVKENDDDVIIVVLNCT---PRWKETKKIYDFVKENYDFKKLASKNQVLDKVEDN 291
Query: 286 SNEVPNI--SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL-----KNKITKK 336
N+ + ++ + ++ + S + + ++ K
Sbjct: 292 RGNKINLVCNNDLVIPVGKQEKCEYKIIKPTKLPSRVYKGMNLGKINIYKDGKLVSSK 349
>gi|327468250|gb|EGF13735.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK330]
Length = 422
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 64/375 (17%), Positives = 131/375 (34%), Gaps = 41/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + + +D +G ++ E + P S+T L+
Sbjct: 1 MKRLFLCLLVLVGMTASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + + ++ S+N
Sbjct: 61 TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRYKVKDLIAASLMSSSN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FVQ M K G+ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYGTSAS 180
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGT 209
+ +A D+A++S + DFPQ +I G N N+
Sbjct: 181 TAKKSKDAENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSNF 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFY 265
G DG+K G + G + VA+ + +I V+L D R +ASL++
Sbjct: 241 RSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQ 300
Query: 266 NKTDRKKINYIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N T + S++ ++ +++ + +++
Sbjct: 301 NFTQTTIVAEGEAYNKSHSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGF 360
Query: 320 FIDFEKITLLKNKIT 334
+K T L
Sbjct: 361 QAPLKKNTELGTLTY 375
>gi|56967192|pdb|1XP4|A Chain A, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
Factor (Pbp3) From Streptococcus Pneumoniae
gi|56967193|pdb|1XP4|B Chain B, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
Factor (Pbp3) From Streptococcus Pneumoniae
gi|56967194|pdb|1XP4|C Chain C, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
Factor (Pbp3) From Streptococcus Pneumoniae
gi|56967195|pdb|1XP4|D Chain D, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
Factor (Pbp3) From Streptococcus Pneumoniae
Length = 379
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 69/351 (19%), Positives = 138/351 (39%), Gaps = 31/351 (8%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ ++ T + ++ NTG ++ E P AS+TKL+T Y+V+ L+
Sbjct: 2 VSTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKLITVYLVYEALENGSIT 61
Query: 76 LTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L+TP+ IS + +++ + T++ L+ +V SAN A+A+AE + +EK
Sbjct: 62 LSTPVDISDYPYQLTTNSEASNIPXEARNYTVEELLEATLVSSANSAAIALAEKIAGSEK 121
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIK 178
FV G+ +N G+ + +A D+AI++ +
Sbjct: 122 DFVDXXRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAIVARNLI 181
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQ 234
+PQ + + G +TN+ + G DG+KTG T +G + V + ++
Sbjct: 182 KKYPQVLEITKKPSSTFAGXTITSTNYXLEGXPAYRGGFDGLKTGTTDKAGESFVGTTVE 241
Query: 235 GDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYII------KDFYQQN 284
+I V+L A + R ++SL T RK +
Sbjct: 242 KGXRVITVVLNADHQDNNPYARFTATSSLXDYISSTFTLRKIVQQGDAYQDSKAPVQDGK 301
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ E++ ++ + ++ D ++ E T++ + +
Sbjct: 302 EDTVIAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEAGTVVGHLTYE 352
>gi|228971991|ref|ZP_04132609.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228978601|ref|ZP_04138974.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
Bt407]
gi|228781097|gb|EEM29302.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
Bt407]
gi|228787705|gb|EEM35666.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|326939691|gb|AEA15587.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 317
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313
>gi|260590039|ref|ZP_05855952.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
20583]
gi|260539551|gb|EEX20120.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
20583]
Length = 448
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 60/266 (22%), Positives = 112/266 (42%), Gaps = 12/266 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
A L++ ++G V+ + + PAS TK+MTA ++ + + +T
Sbjct: 72 SGWPSAPEISSASGVLMEASSGQVLFDKSMNEIRYPASTTKVMTALIILENIPDLNKNIT 131
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I + + S + G +T++ L +++ SAN++ +A + + + F
Sbjct: 132 FTDIILPDLAPGN-STINAQVGEVLTVEQCLYAIMLASANEVCTQMAVEVAGSVENFTAM 190
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ------YMHYFQIK 191
MN + +G + THF+NA+G+ HYTTA D+A++ + +
Sbjct: 191 MNAKAAEIGCTNTHFVNANGLPDPNHYTTAYDLALILREAVKNEAFCKIAGAAKYTIPPT 250
Query: 192 GLEIKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ N N + GA KTG T A+ +V +A + D +LI V+L +
Sbjct: 251 NKTAASRNMENHNALLVDGKYYYEGAIAGKTGHTEAARNTLVTAASREDMTLICVVLRSE 310
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKI 273
+ R + +L GF N +
Sbjct: 311 NDE-RFTDTRTLFDYGFDNFHSQSLY 335
>gi|153953884|ref|YP_001394649.1| D-alanyl-D-alanine carboxypeptidase-related protein [Clostridium
kluyveri DSM 555]
gi|219854499|ref|YP_002471621.1| hypothetical protein CKR_1156 [Clostridium kluyveri NBRC 12016]
gi|146346765|gb|EDK33301.1| D-alanyl-D-alanine carboxypeptidase-related protein [Clostridium
kluyveri DSM 555]
gi|219568223|dbj|BAH06207.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 398
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 77/315 (24%), Positives = 132/315 (41%), Gaps = 14/315 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
LD+N+ V+ E AS TK+MTA V + L
Sbjct: 34 AVKEPNVNARCAVALDSNSKVVVYEKNAYELVPMASTTKIMTALVAMKY-----GDLNKK 88
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
I IS A+ S +KKG ++ L L L+++S ND A+AIAE + + ++F + MN
Sbjct: 89 IDISPKAASVRGSTVGYKKGESILLKELLFGLMLRSGNDAAIAIAEGISGSVEEFAKLMN 148
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+ LG+ T F HG+ GHY+TA D+A+++ P + K ++ + K
Sbjct: 149 EYAGELGVINTQFQTPHGLDSEGHYSTAYDLALVTS-AAKKEPLFNEIVSSKDVDGEKNK 207
Query: 200 ----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y N N + A+G+KTG+T +G +V S +I V+L + R +
Sbjct: 208 FSRSYHNINKILWQIPEANGVKTGYTGKAGKCLVTSVAIEKNDIIIVVLNSPG---RWEE 264
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN-ISEEVCTTQKEIINYNTQMKEAK 314
+ + N K + + N + +++ K Y T++ + +
Sbjct: 265 TDKIYEYVNKNYKFVKLFSKGDIAAELKINRNNLKLECEDDIVLPIKNGFKYTTKIIKPQ 324
Query: 315 DKESHFIDFEKITLL 329
+ +KI +L
Sbjct: 325 KIAYNVKKGDKIGML 339
>gi|212702629|ref|ZP_03310757.1| hypothetical protein DESPIG_00657 [Desulfovibrio piger ATCC 29098]
gi|212673901|gb|EEB34384.1| hypothetical protein DESPIG_00657 [Desulfovibrio piger ATCC 29098]
Length = 285
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 2/234 (0%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+++ + G V+ E+ P+ PASLTK+MT YVV +K + T I + +
Sbjct: 38 VMINLSNGKVLYEHNPNLSIPPASLTKVMTMYVVMDRIKLGRLKRNTSIRVHPT-ARVGG 96
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S+ + +T+D L + V S ND A+AI++ + + F MN+ ++ LG++ T
Sbjct: 97 SSMRLRPRQKVTVDQLLTGMAVASGNDAAMAISQHISGNSRNFTHLMNHKARQLGMTRTV 156
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
F N G+ G TTARDMA L+ PQ M Y ++ G+ TN +G
Sbjct: 157 FKNPTGLPAAGQRTTARDMATLARAYLRSHPQAMRYHSLRSFRFNGRTLGATNTMLGI-P 215
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
G DG+KTG+T ASG+NI+ +A +G L+ V++G R R+ V+ SL+ GF
Sbjct: 216 GVDGLKTGWTVASGYNIIVTARRGKTRLLVVVMGGRSRAARDMVAHSLIEAGFK 269
>gi|229127385|ref|ZP_04256380.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
BDRD-Cer4]
gi|229144594|ref|ZP_04272996.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
BDRD-ST24]
gi|296502572|ref|YP_003664272.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
gi|228638834|gb|EEK95262.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
BDRD-ST24]
gi|228656067|gb|EEL11910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
BDRD-Cer4]
gi|296323624|gb|ADH06552.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
Length = 317
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313
>gi|23098797|ref|NP_692263.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis
HTE831]
gi|22777024|dbj|BAC13298.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Oceanobacillus iheyensis HTE831]
Length = 393
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 82/343 (23%), Positives = 138/343 (40%), Gaps = 21/343 (6%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+R+F ++II ++ I+ ++A+ L++ +G ++AE + PAS+
Sbjct: 2 LRKFYIMIIITSLNFFIWTSTTLADEDLSLHSESAILMEAESGQILAEKNANQQMYPASV 61
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+ TA V L+ + IS+ A+E + +G ++L +K L++ S
Sbjct: 62 TKIATAIYVIEN-----GNLSEEVEISEKATEADGTTVFLAEGEKVSLGKLVKGLLINSG 116
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTS-KNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
ND VAIAE + + ++F + M + G+ T+F N HG+ HYTTA D+A ++
Sbjct: 117 NDAGVAIAEHMNGSVREFSKEMTEFFEEKAGIENTNFDNPHGLFDDNHYTTAEDLAKITK 176
Query: 176 RIKTD------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ F ++ K E + + G G K G+ SGF +V
Sbjct: 177 YAMQNEKFVKLFGMKSVDWESKTWETTILNHHRMVKGEIPYDGVTGGKNGYVSRSGFTLV 236
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK-----INYIIKDFYQQN 284
+A Q +LIAV L + + LL GF + K F
Sbjct: 237 TTAEQDGMNLIAVTLKTPLSEQSYEDTVELLDYGFEHYEPFTIDEGTSFMTNGKQFKNSE 296
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
V +V KE + KE + EK
Sbjct: 297 DLTYVHEEGSKVEEEIKEDGKLVIEDNGELLKEFQLDNVEKKQ 339
>gi|228920684|ref|ZP_04084027.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228838985|gb|EEM84283.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 309
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 128/261 (49%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 45 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 104
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 105 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 164
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 165 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 224
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 225 QSQLAFNNINVISTNDMLNRNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 284
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G ++ R + L+S F
Sbjct: 285 MGTSNKTKRFTETNKLMSYAF 305
>gi|206970894|ref|ZP_03231846.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH1134]
gi|229109442|ref|ZP_04239036.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-15]
gi|229178383|ref|ZP_04305752.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 172560W]
gi|206734530|gb|EDZ51700.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH1134]
gi|228605113|gb|EEK62565.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 172560W]
gi|228674009|gb|EEL29259.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-15]
Length = 317
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313
>gi|171777393|ref|ZP_02919182.1| hypothetical protein STRINF_00009 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171283273|gb|EDT48697.1| hypothetical protein STRINF_00009 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 410
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 66/365 (18%), Positives = 136/365 (37%), Gaps = 32/365 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI-AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++A+ + + + ++ +TG V+ E P AS+TK+
Sbjct: 1 MKKVFAVLALLLAFIGNKVAADDTFNVAAKHAIAVEASTGKVLYEKDATTPDGIASMTKI 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA--- 116
+T Y+ + + + T + IS A + ++ +L+
Sbjct: 61 LTVYLTYKEIDKGNLSWDTKVPISDYAYDLTANSDASNVPMEAREYTVEQLVNAAMVASA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HG 162
N A+A+AE + TE KFV M + G++ NA G+
Sbjct: 121 NSAAIALAEKIGGTESKFVDMMQTQLQEWGINDAKLFNASGLNNSYLGDNIYPGSSSTDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +ARD+AI++ + T++P + + +G N+ + G DG+KT
Sbjct: 181 NTLSARDVAIIAQHLITEYPDVLKISNQTTADFEGSTMNTYNYMLKGMPYERDGVDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKIN 274
G T +G + VA++ + +I+V++ A R + + +LL N ++
Sbjct: 241 GTTELAGASFVATSTENGMRIISVVMNADGWQENEFARFEATNALLDYVKSNYEMTTLVD 300
Query: 275 YII-----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
K VP ++ + I + +K + + + K +
Sbjct: 301 AGESTKNSKAKVIDGKEKTVPAVASQELKVV-HRIGTDASVKFSTKIKGYEATINKGDKV 359
Query: 330 KNKIT 334
+ I
Sbjct: 360 GSFIY 364
>gi|206977452|ref|ZP_03238347.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
H3081.97]
gi|206744302|gb|EDZ55714.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
H3081.97]
Length = 317
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 12/265 (4%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++ + P I ++D + G +I ++ + + PAS++K+MTAY++ +
Sbjct: 49 LVEKVVPPKYIPREIDAKAAMIIDASNGDIIYQHNENEAFAPASMSKMMTAYLLLENVHN 108
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
K P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+E
Sbjct: 109 GKVRWEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSE 168
Query: 132 KKFVQHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHY 187
K FVQ MN +K L +S F NA G+ TA D+A L++ + D+P+ +
Sbjct: 169 KDFVQLMNAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVANLAYHLIKDYPEILEV 228
Query: 188 FQIKGLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
++ ++ N N G DG+KTGFT ++G+ +A QGD +
Sbjct: 229 THLRQSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRI 288
Query: 240 IAVILGALDRNTRNKVSASLLSMGF 264
I V++G + R + L+S F
Sbjct: 289 ITVVMGTKGKTKRFTETNKLMSYAF 313
>gi|229096494|ref|ZP_04227465.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-29]
gi|229115468|ref|ZP_04244874.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-3]
gi|228667881|gb|EEL23317.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock1-3]
gi|228686700|gb|EEL40607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-29]
Length = 317
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G VI ++ + + PAS++K+MTAY++ + K
Sbjct: 53 VVPSKYIPPKVDAKAAMIIDASNGDVIYQHNENEAFAPASMSKMMTAYLLLESVHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S+ A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKMSEKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMNAKAKQLEMSEHAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTSSKTKRFTETNKLMSYTF 313
>gi|153813187|ref|ZP_01965855.1| hypothetical protein RUMOBE_03603 [Ruminococcus obeum ATCC 29174]
gi|149830718|gb|EDM85809.1| hypothetical protein RUMOBE_03603 [Ruminococcus obeum ATCC 29174]
Length = 441
Score = 149 bits (375), Expect = 6e-34, Method: Composition-based stats.
Identities = 73/269 (27%), Positives = 112/269 (41%), Gaps = 12/269 (4%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ S+ A L+D +TG V+ + D PAS TK+MT V
Sbjct: 38 VASDSIAGWPAAPAVTSETAVLIDADTGAVLYDKGMDEYRYPASTTKIMTMLVAIENSSP 97
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
K + T I + SN + G TMT+ + +KSAN++ IAE++ TE
Sbjct: 98 KDIVTFTETGI--RDVTWDSSNINAQLGETMTMKDCWMAAYIKSANEVCAQIAETVGGTE 155
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQ 189
FV+ MN +K LG + THF NA G+ HY++A D+A + + F Q M
Sbjct: 156 ANFVEMMNQKAKELGCTHTHFANASGLPDENHYSSAHDLAKIMRACLRNKRFRQVMKCSN 215
Query: 190 IKGLEIKGKKYPNTNWAVG--------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
K + + + + G KTGF+ + +V +A + ++ IA
Sbjct: 216 YKIPATNLSEARVMHTHMPLMAKESNLYYADCIGGKTGFSTDAQHTLVTAAERNGRTYIA 275
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDR 270
V + A D S SL + F N
Sbjct: 276 VTMRAADLGINCTDSTSLFNYAFDNFDTI 304
>gi|255994530|ref|ZP_05427665.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saphenum ATCC
49989]
gi|255993243|gb|EEU03332.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saphenum ATCC
49989]
Length = 447
Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats.
Identities = 69/346 (19%), Positives = 131/346 (37%), Gaps = 31/346 (8%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ ++ + D +TG VI + D PAS TK+MTA +
Sbjct: 23 FFTFTQKGYTAMTPAADANAVLVADCDTGEVIYQRNADKSVAPASTTKIMTALLTIEN-- 80
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L + + A+E + G M + + L L++ SA+D A+ +A ++ +
Sbjct: 81 ---VNLQKVVEV-PQAAEGLKDGINLRTGEKMRIIDLLHGLLIASADDTAIVLAYAVSGS 136
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+KF + MN +K LG T F N +G+ + GH +TA D+ I+S + ++
Sbjct: 137 VEKFAEKMNQKAKELGCKNTTFKNPNGIDEAGHQSTAYDLFIMSNEFMKNKLMRKIVTKL 196
Query: 191 KG-----LEIKGKKYPNTNW---------------AVGTFLGADGMKTGFTCASGFNIVA 230
+ + + N N + GA G+KTG T +G +++
Sbjct: 197 QYTIPATNKSGVRVLQNHNRLLFDTNHNVEVFGQLRPAYYEGALGLKTGDTVNAGACLIS 256
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
A + + +V++G + R S L F +K + K + L E
Sbjct: 257 MAKRHGVEVCSVVMGT-SKKQRFAASIETLDHAFEKYALKKIVKKGEKVAKLKVLQGESD 315
Query: 291 NISEEVCTTQK----EIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +V ++ + K+ K++ + T +
Sbjct: 316 KVDIKVKGSKAIWSLKNAKKLGIYKKVVLKKAITAPVKAGTKVGKL 361
>gi|284029293|ref|YP_003379224.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Kribbella
flavida DSM 17836]
gi|283808586|gb|ADB30425.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Kribbella
flavida DSM 17836]
Length = 380
Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats.
Identities = 55/296 (18%), Positives = 102/296 (34%), Gaps = 11/296 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
S + + Y + D TG V+A P PAS K +TA V+ +
Sbjct: 41 STVVAAGATPPAVHASAYVVADIGTGAVLAAKAPHAKLRPASTLKTLTALVLLP-----R 95
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ + + S G ++D + + + S ND A+ +
Sbjct: 96 LNKKDVVVGTNQDAGIVGSKVGVYPGLRYSVDLLFEGMFLASGNDAVNALVQHDEGGTAG 155
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----PQYMHYFQ 189
VQ MN + +LG TH + G+ G ++A D+A+ + Y
Sbjct: 156 TVQRMNKLAADLGALDTHVTDPTGLDADGQVSSAYDLALFARAGLARRDFAKYAATKYTN 215
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
E + N N + + GA G+KTG+T + + +A + +L+ +L +
Sbjct: 216 FPLAESGTYQVANQNKLLFNYDGALGVKTGYTTLARNTFIGAARRNGHTLVVTMLNSP-- 273
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
+ + LL F N + + + + + S + V
Sbjct: 274 HGVTGDATELLDWAFRNYSTLTPVGTLARPTAAEETSGRNTSKKGPVAPPLPNRSR 329
>gi|229102587|ref|ZP_04233291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-28]
gi|228680814|gb|EEL34987.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-28]
Length = 317
Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats.
Identities = 74/261 (28%), Positives = 129/261 (49%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G VI ++ + + PAS++K+MTAY++ + K
Sbjct: 53 VVPSKYIPPKVDAKAAMIIDASNGDVIYQHNENEAFAPASMSKMMTAYLLLESVHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S+ A++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 113 WEDPVKMSEKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKTEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMNAKAKQLEMSEHAKFANASGLQEPDGSETKMTAADVAKLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNVNVISTNDMLNKNNKSLYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTSSKTKRFTETNKLMSYTF 313
>gi|325695651|gb|EGD37551.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK150]
Length = 422
Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats.
Identities = 65/375 (17%), Positives = 132/375 (35%), Gaps = 41/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + + +D +G ++ E + P S+T L+
Sbjct: 1 MKRLFLCLLVLVGMTANKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + + ++ S+N
Sbjct: 61 TVYLVYEAIDRGDLTADTYVDISDYAYSLTSNPNISNVPLEAKRYKVKDLIAASLMSSSN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FVQ M K G+ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASAS 180
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGT 209
+ +A D+A++S + DFPQ +I G N N+
Sbjct: 181 TSKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNF 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFY 265
G DG+K G + G + VA+ + +I V+L D R +ASL++
Sbjct: 241 RSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQ 300
Query: 266 NKTDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N T + N S++ ++ +++ + +++
Sbjct: 301 NFTQTTIVAEGETYNKSNSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGF 360
Query: 320 FIDFEKITLLKNKIT 334
+K T L
Sbjct: 361 QAPLKKNTELGTLTY 375
>gi|228907701|ref|ZP_04071557.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
IBL 200]
gi|228851934|gb|EEM96732.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
IBL 200]
Length = 309
Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats.
Identities = 73/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 45 AVPPKYIPPKIDAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 104
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+++ L+++SAN+ AVA+AE + KTEK FV
Sbjct: 105 WEDPVKMSVKAAQTEGARIPVQVNDTLTVNDLYHALMIESANNSAVALAEHMAKTEKDFV 164
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 165 QLMNAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 224
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 225 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 284
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 285 MGTSSKTKRFTETNKLMSYAF 305
>gi|862471|gb|AAC36937.1| ORF4 [Salmonella enterica subsp. enterica serovar Typhimurium]
Length = 255
Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats.
Identities = 72/251 (28%), Positives = 116/251 (46%), Gaps = 14/251 (5%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFN 227
D+A+LS I P++ H + K L G N N + DG+KTG T +GFN
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSGAGFN 244
Query: 228 IVASAIQGDQS 238
++ASA+ G +
Sbjct: 245 LIASAVDGQRR 255
>gi|228952354|ref|ZP_04114442.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228807350|gb|EEM53881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 317
Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313
>gi|254469200|ref|ZP_05082605.1| D-alanyl-D-alanine carboxypeptidase, putative [Pseudovibrio sp.
JE062]
gi|211961035|gb|EEA96230.1| D-alanyl-D-alanine carboxypeptidase, putative [Pseudovibrio sp.
JE062]
Length = 372
Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats.
Identities = 68/331 (20%), Positives = 117/331 (35%), Gaps = 8/331 (2%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
MA S + + A K TL D ++ PA+LTKLMTA V +
Sbjct: 1 MAFCSILAASPAQAVEIKAKAATLYDFTNKSLVFSKNSQVLMAPANLTKLMTAVTVQQAI 60
Query: 70 KEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
T +S++A + + S++++++ + LIV SAND A+ +A
Sbjct: 61 HAGDITPQTMFKVSEHAWRTGGAPARVTTMFARLNSSVSVNDLMYGLIVHSANDAAIILA 120
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E L +E+ F Q MN +K++G+ ++F N G H TT D+ +L+ + P+
Sbjct: 121 EGLAGSEENFAQEMNKLAKSIGMENSNFTNPTGFPDENHKTTLEDLTVLAAYVLEHEPEL 180
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ + N N + G DG GF+ GF + + +A I
Sbjct: 181 HSVYAMDRFTWNKITQRNKNPLIRDIQGLDGFGAGFSEREGFAALGTLDSNGHRYVAAIA 240
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISEEVCTTQK 301
+ R + +LL F ++ V + + T
Sbjct: 241 ASPTLQDRVQDMKTLLLPTFSGLKLQQLFRKGELISDAQVYGGKKTTVSLKTNDAVATLI 300
Query: 302 EIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ EK +
Sbjct: 301 NPNEKDKYKLRVVYNGPIPAPIEKGMEVGEL 331
>gi|257886898|ref|ZP_05666551.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
1,141,733]
gi|257822952|gb|EEV49884.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
1,141,733]
Length = 435
Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats.
Identities = 64/350 (18%), Positives = 123/350 (35%), Gaps = 32/350 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L ++ +D +G ++ + + AS+TK++ Y+V +
Sbjct: 20 ASFLPSVAVQAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ G+ +NA G+ + +A+D+A
Sbjct: 140 KISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R +A L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETARLMDYCYDNWSEKELGKANAS 319
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + V + M K + +D +++T
Sbjct: 320 IPSLKTIDVKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITPTLDKKQVT 369
>gi|260588887|ref|ZP_05854800.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
20583]
gi|260540666|gb|EEX21235.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
20583]
Length = 478
Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats.
Identities = 71/335 (21%), Positives = 135/335 (40%), Gaps = 25/335 (7%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK- 72
SN P ++D +T ++ D PAS TK++TA + + +
Sbjct: 59 SNNIPGWPEGPKVMAETAIVMDMDTEEILYAKGIDEKRAPASTTKILTAMLAIEKVPFET 118
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ T + + S + G T+T+ + +++ SAN+++ +AE + T
Sbjct: 119 QITFTDEVNNIEAGSTHIGIK----PGETLTMKDCAYAILLASANEVSSGVAEYIGTTVP 174
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF------PQYMH 186
FV MN +K LG + THF+NA+G+ HYTTARD+AI++ + +
Sbjct: 175 AFVDMMNQRAKELGCTNTHFVNANGLYDENHYTTARDLAIIAKAAFQNETFREVVKTPYY 234
Query: 187 YFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ + + N + + G G KTG+T +G +V A + + L+
Sbjct: 235 IVPKTNITDEERWLNNHHKMILQGSEYYEGCLGGKTGYTEKAGNTLVTYAERNGRKLVCA 294
Query: 243 ILGALDRNTRNKVSASLLSMGFYNK----------TDRKKINYIIKDFYQQNLSNEVPNI 292
+L ++ + + +LL GF + + K + + LS +
Sbjct: 295 LLADVNVVAQYTDTKALLDYGFNSFQRLDTTAVSLSPAKSDKLGKQLEEKGLLSTALETT 354
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
S V E + Y T ++ ++ ++I
Sbjct: 355 SISVPKELTEELTYKTTLENNMLNIDYYYGKQQIG 389
>gi|77405145|ref|ZP_00782244.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
agalactiae H36B]
gi|77176288|gb|EAO79058.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
agalactiae H36B]
Length = 414
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 142/360 (39%), Gaps = 30/360 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ I+ ++ + + + + + +D ++G ++ E + P ASLTK+MT
Sbjct: 6 KIITSILLLSCIFFMPTISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKIMT 65
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
Y+V+ + T + I + +++ + T+ + ++ SAN
Sbjct: 66 VYMVYKEIDNGNLKWNTKVNIXDYPYQLTRESDASNVPLEKRRYTVKQLVDAAMISSANS 125
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHY 164
A+A+AE + TE KFV M + G+ +H +NA G+ +
Sbjct: 126 AAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDENK 185
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMKTGF 220
+ARD+AI+++ + ++P + + + N+ + G G+KTG
Sbjct: 186 MSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKTGT 245
Query: 221 TCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
T +G + +A++ + L+ VI+ A D+ R + SLL+ +
Sbjct: 246 TELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLAKG 305
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ V + E+ + Q K + I+F+K L ITKK
Sbjct: 306 AA---YKGKEASVRDGKEQSVIAVAKNDLKVVQKKNITKQNQLKINFKK--ELTAPITKK 360
>gi|302386883|ref|YP_003822705.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
saccharolyticum WM1]
gi|302197511|gb|ADL05082.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
saccharolyticum WM1]
Length = 431
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 72/261 (27%), Positives = 113/261 (43%), Gaps = 20/261 (7%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P + L+D +TG ++ D + PAS+TKLMTA +V L
Sbjct: 84 PSGITQPEIQSEGAVLMDASTGTLLYSKNGDTRYYPASITKLMTALLVAEKC-----SLP 138
Query: 78 TPITISK---NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+T SK E +G +T++ L L++KSAN++A +AE + + F
Sbjct: 139 DTVTFSKAATTNLESGAVTLGLSEGDKLTVEQCLYGLMLKSANEVANGLAEHVSGSISAF 198
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY-------MHY 187
MN +K LG + T+F+N +G+ GHYTTA DMA+++ +
Sbjct: 199 SALMNVRAKELGCTGTNFVNPNGLNSSGHYTTAHDMALIARAAFQNETVKKVTSTLSYQI 258
Query: 188 FQIKGLEIKGKKYPNTNWAVG---TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
K + + G + G G KTG+T +G +V + LIAVI+
Sbjct: 259 PATKNASARTVSMGHKMLYPGDSRYYPGVIGGKTGYTSLAGNTLVTCVEKNGIRLIAVIM 318
Query: 245 GALDRNTRNKVSASLLSMGFY 265
++T + SLL GF
Sbjct: 319 --KSKSTHYADTKSLLDYGFA 337
>gi|293571656|ref|ZP_06682677.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E980]
gi|291608326|gb|EFF37627.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E980]
Length = 435
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 64/350 (18%), Positives = 122/350 (34%), Gaps = 32/350 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L + +D +G ++ + + AS+TK++ Y+V +
Sbjct: 20 ASFLPAVAVQAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ G+ +NA G+ + +A+D+A
Sbjct: 140 KIAGSEAKFTERMKEQLKDWGIKDAMIVNASGLNNSYLGENRPEGTGENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R +A L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETARLMDYCYDNWSEKELGKANAS 319
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + V + M K + +D +++T
Sbjct: 320 IPSLKTIDVKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITPTLDKKQVT 369
>gi|325689091|gb|EGD31099.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK115]
Length = 422
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/375 (17%), Positives = 129/375 (34%), Gaps = 41/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + +D +G ++ E + P S+T L+
Sbjct: 1 MKRLFLCFLVLVGLTASKVAADDYNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + + ++ SAN
Sbjct: 61 TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRYKVKDLIAASLMSSAN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FVQ M K G+ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETDYTASAS 180
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGT 209
+ +A D+A++S + DFPQ +I G N N+
Sbjct: 181 TAKKSKDTENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSNF 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFY 265
G DG+K G + G + VA+ + +I V+L D R +ASL++
Sbjct: 241 RSGVDGLKAGSSEKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQ 300
Query: 266 NKTDRKKINYIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N T + S++ ++ +++ + ++
Sbjct: 301 NFTQTTIVAEGEAYNKSHSTVIDGKQKAVPAVASKDFTIIERIANQAEHKVEFSTKEQGF 360
Query: 320 FIDFEKITLLKNKIT 334
+K T L
Sbjct: 361 QAPLKKNTELGTLTY 375
>gi|331083423|ref|ZP_08332535.1| hypothetical protein HMPREF0992_01459 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330404116|gb|EGG83664.1| hypothetical protein HMPREF0992_01459 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 478
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 71/335 (21%), Positives = 135/335 (40%), Gaps = 25/335 (7%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK- 72
SN P ++D +T ++ D PAS TK++TA + + +
Sbjct: 59 SNNIPGWPEGPKVMAETAIVMDMDTEEILYAKGIDEKRAPASTTKILTAMLAIEKVPFET 118
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ T + + S + G T+T+ + +++ SAN+++ +AE + T
Sbjct: 119 QITFTDEVNNIEAGSTHIGIK----PGETLTMKDCAYAILLASANEVSSGVAEYIGTTVP 174
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF------PQYMH 186
FV MN +K LG + THF+NA+G+ HYTTARD+AI++ + +
Sbjct: 175 AFVDMMNQRAKELGCTNTHFVNANGLYDENHYTTARDLAIIAKAAFQNETFREVVKTPYY 234
Query: 187 YFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ + + N + + G G KTG+T +G +V A + + L+
Sbjct: 235 IVPKTNITDEERWLNNHHKMILQGSEYYEGCLGGKTGYTEKAGNTLVTYAERNGRKLVCA 294
Query: 243 ILGALDRNTRNKVSASLLSMGFYNK----------TDRKKINYIIKDFYQQNLSNEVPNI 292
+L ++ + + +LL GF + + K + + LS +
Sbjct: 295 LLADVNVVAQYTDTKALLDYGFDSFQRLDTTAVSLSPAKSDKLGKQLEEKGLLSTALETT 354
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
S V E + Y T ++ ++ ++I
Sbjct: 355 SISVPKELTEELTYKTTLENNMLNIDYYYGKQQIG 389
>gi|328947304|ref|YP_004364641.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema succinifaciens
DSM 2489]
gi|328447628|gb|AEB13344.1| Serine-type D-Ala-D-Ala carboxypeptidase [Treponema succinifaciens
DSM 2489]
Length = 479
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 77/358 (21%), Positives = 129/358 (36%), Gaps = 37/358 (10%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ F ++ ++D TG+++ E D PAS+TKL+ YVVF ++
Sbjct: 82 IVSELPFQYVPADLFVNAESAIVVDFATGNILFEKNADVQIPPASMTKLVEMYVVFEAVE 141
Query: 71 EKKAMLTTPITISKNASEYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ L + + + + + +TL L L + S ND ++A+A+
Sbjct: 142 NGEISLDDVVPLPPESWARNLPSDASIMFLDERQKVTLRELLLGLAIASGNDASIAVAKY 201
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YM 185
+C FV+ MN T K +GL T F+ + G + TTA++ A + FP
Sbjct: 202 VCGNMDSFVERMNQTVKKMGLVKTEFVESSG-YSEKNITTAKEFAAFCRKYIERFPFAIT 260
Query: 186 HYFQIKGLEIKGKK-----------------YPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ K L K NTN +G+ G DG+KTGF SGFN+
Sbjct: 261 EFHSQKVLRYPLAKNLPRESAQKNGDSQAVIQYNTNKLLGSLDGCDGLKTGFIYESGFNL 320
Query: 229 VASAIQGDQSLIAVILGALDRNT------RNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+A + I+V + + R K +L+ F +
Sbjct: 321 ALTAERNGVRYISVTMKGPGIGSAQGNIYRVKDGTNLMEYAFSKFSPYIAKQPHNFSVGV 380
Query: 283 QN--------LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + N S + A +S F +FE+ T
Sbjct: 381 AGSSLKSVCLVPAKSENFSVPFISGVSPKEAAQKIHVTANIPKSIFGEFEEGTQFGTL 438
>gi|257890484|ref|ZP_05670137.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
1,231,410]
gi|260558933|ref|ZP_05831120.1| predicted protein [Enterococcus faecium C68]
gi|293559772|ref|ZP_06676292.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1162]
gi|314950187|ref|ZP_07853472.1| beta-lactamase [Enterococcus faecium TX0082]
gi|257826844|gb|EEV53470.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
1,231,410]
gi|260075041|gb|EEW63356.1| predicted protein [Enterococcus faecium C68]
gi|291606255|gb|EFF35669.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1162]
gi|313643497|gb|EFS08077.1| beta-lactamase [Enterococcus faecium TX0082]
Length = 435
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 64/350 (18%), Positives = 122/350 (34%), Gaps = 32/350 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L + +D +G ++ + + AS+TK++ Y+V +
Sbjct: 20 ASFLPAVAVQAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ G+ +NA G+ + +A+D+A
Sbjct: 140 KISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R +A L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETARLMDYCYDNWSEKELGKANAS 319
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + V + M K + +D +++T
Sbjct: 320 IPSLKTIDVKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITPTLDKKQVT 369
>gi|288871299|ref|ZP_06117136.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
gi|288863963|gb|EFC96261.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
Length = 465
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 20/259 (7%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ L+D TG+++ + + PAS+TKLMTA +V L
Sbjct: 104 TVKQPEIQAQGAVLMDAATGNLLYSKNAETKYYPASITKLMTALLVAEKC-----SLDDT 158
Query: 80 ITISK---NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+T SK E +G +T+ L L++KSAN++A +AE + F
Sbjct: 159 VTFSKTAVTNLESGAVTLGLVEGDKLTVRQCLYGLLLKSANEVANGLAEHTAGSISAFAD 218
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-------YMHYFQ 189
MN +K LG + T+F+N +G+ HYTT DMA+++ +
Sbjct: 219 MMNARAKELGCTNTNFVNPNGLNDSNHYTTPHDMALIARAAFQNATVCKVASTLSYQIPA 278
Query: 190 IKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ + + + G G KTG+T +G +V A + LIAVI+ +
Sbjct: 279 TQKAAARTISLGHKMLYPNDSRYYQGVIGGKTGYTSLAGNTLVTCAERDGVRLIAVIMKS 338
Query: 247 LDRNTRNKVSASLLSMGFY 265
+++LL GF
Sbjct: 339 KSTQ--YTDTSALLDYGFA 355
>gi|229079157|ref|ZP_04211706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock4-2]
gi|228704174|gb|EEL56611.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock4-2]
Length = 317
Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 113 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMDAKAKQLKMSEHAKFENASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 293 MGTSSKTKRFTETNKLMSYAF 313
>gi|227551939|ref|ZP_03981988.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecium
TX1330]
gi|257895469|ref|ZP_05675122.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com12]
gi|293378334|ref|ZP_06624503.1| beta-lactamase [Enterococcus faecium PC4.1]
gi|227178940|gb|EEI59912.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecium
TX1330]
gi|257832034|gb|EEV58455.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com12]
gi|292643198|gb|EFF61339.1| beta-lactamase [Enterococcus faecium PC4.1]
Length = 435
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 64/350 (18%), Positives = 122/350 (34%), Gaps = 32/350 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L + +D +G ++ + + AS+TK++ Y+V +
Sbjct: 20 ASFLPAVAVQAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ G+ +NA G+ + +A+D+A
Sbjct: 140 KISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R +A L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETARLMDYCYDNWSEKELGKANAS 319
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + V + M K + +D +++T
Sbjct: 320 IPSLKTIDVKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITPTLDKKQVT 369
>gi|225403123|ref|ZP_03760420.1| hypothetical protein CLOSTASPAR_04451 [Clostridium asparagiforme
DSM 15981]
gi|225043241|gb|EEG53487.1| hypothetical protein CLOSTASPAR_04451 [Clostridium asparagiforme
DSM 15981]
Length = 492
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 71/359 (19%), Positives = 130/359 (36%), Gaps = 44/359 (12%)
Query: 2 RQFLVIIAMAMLSNIF----------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
R+ II + + + + P ++D ++G V+ P+
Sbjct: 3 RKIKRIICLILAAAMSAAASFSAFARPEWPSDTGIMAEAGIVMDQDSGAVLFGQNIHLPF 62
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISK----NASEYPPSNSTFKKGSTMTLDNA 107
PAS+TKL+TA VV K L +T S+ + + + G +++++
Sbjct: 63 APASITKLLTALVVIENSK-----LDDMVTFSQSAVYDVESGSGNKLHMETGDELSVEDC 117
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
L +L++ S+N A A+AE + + + FV+ MN+ K +G + +HF N G+ Y +A
Sbjct: 118 LYMLLLLSSNQAANALAEHVAGSREAFVEMMNDRIKEIGCTESHFANPSGLNDDNQYVSA 177
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN---TNWAV-----------GTFLGA 213
DMA+++ + PN N G
Sbjct: 178 YDMALIAREAFNNETLLKIDSSKSYSIGATANNPNGASFNMEHRLIMAEDTSSQYYCEGT 237
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
KTG+T +G +V + + LIAV+L + S SLL GF N +
Sbjct: 238 MAGKTGYTSIAGNTLVTLTERDGRRLIAVVLKG-TQPQYYLDSKSLLEFGFANFDNINIA 296
Query: 274 N------YIIKDFYQQNLSNEVPNISEE----VCTTQKEIINYNTQMKEAKDKESHFID 322
S E ++ + + + + + + + H
Sbjct: 297 EHETAYTTGEGPVQVGAKSYEPSDLYLDSVAVITVPKGAAFSDADRDLVTELPKDHPKG 355
>gi|293568621|ref|ZP_06679936.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1071]
gi|291588581|gb|EFF20414.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1071]
Length = 435
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 64/350 (18%), Positives = 122/350 (34%), Gaps = 32/350 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L + +D +G ++ + + AS+TK++ Y+V +
Sbjct: 20 ASFLPAVAVQAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ G+ +NA G+ + +A+D+A
Sbjct: 140 KISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R +A L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETARLMDYCYDNWSEKELGKANAS 319
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + V + M K + +D +++T
Sbjct: 320 IPSLKTIDVKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITPTLDKKQVT 369
>gi|227873312|ref|ZP_03991575.1| D-alanyl-D-alanine carboxypeptidase [Oribacterium sinus F0268]
gi|227840841|gb|EEJ51208.1| D-alanyl-D-alanine carboxypeptidase [Oribacterium sinus F0268]
Length = 525
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 70/293 (23%), Positives = 124/293 (42%), Gaps = 24/293 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ V++ + S +F ++A+T + L+D + ++ + + PAS+
Sbjct: 19 YFVLLFSMLFSFVFSQQALADTWPTCVDQIEADGALLMDAKSSTILYAKNENTHYFPASI 78
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK++TA VV ++ + +T ++ E + G +++ + L L++ SA
Sbjct: 79 TKVLTAIVVLEHVENLEEKVTFSQEATRGNLENNSTVIAASPGDKLSVRDCLYSLLLHSA 138
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A A+AE + + +KF + MN + +G + +HF N G+ HYT+A DMA +
Sbjct: 139 NDCANALAEHVAGSNEKFAELMNQKAAEIGCTNSHFTNPSGLNNPEHYTSALDMAKIMQY 198
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG---------------TFLGADGMKTGFT 221
++ KYP+ N + G KTG+T
Sbjct: 199 AISNPTFCQIDATQVYTHGPLIKYPDPNAPENTIYAHHKMMKKSNKEYYSGVFAGKTGYT 258
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
+G +V + +GD +LI VIL + R S L GF N N
Sbjct: 259 LLAGNTLVTACKRGDTTLICVILNGHNSQYR--DSKKLFDFGFANFNSYPAEN 309
>gi|324996133|gb|EGC28044.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK678]
Length = 422
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 64/375 (17%), Positives = 132/375 (35%), Gaps = 41/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + + +D +G ++ E + P S+T L+
Sbjct: 1 MKRLFLCLLVLVGMTTSKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + + ++ S+N
Sbjct: 61 TVYLVYEAIDRGDLTADTYVDISDYAYNLTSNPNISNVPLEAKRYKVKDLIAASLMSSSN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FVQ M K G++ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVQMMKAKLKEWGITDATVVNSTGLNTLLLEYATEETEYSTSAS 180
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGT 209
+ +A D+A++S + DFPQ +I G N N+
Sbjct: 181 TAKKSKDTENKFSAYDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNF 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFY 265
G DG+K G + G + VA+ + +I V+L D R +ASL++
Sbjct: 241 RSGVDGLKAGSSDKGGSSFVATTTENGIRMITVVLDVDQTDGDPYARFVATASLMNYVSQ 300
Query: 266 NKTDRKKINYIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N T + S++ ++ +++ + +++
Sbjct: 301 NFTQTTIVAEGEAYNKSHSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGF 360
Query: 320 FIDFEKITLLKNKIT 334
+K T L
Sbjct: 361 QAPLKKNTELGTLTY 375
>gi|167767426|ref|ZP_02439479.1| hypothetical protein CLOSS21_01945 [Clostridium sp. SS2/1]
gi|167711401|gb|EDS21980.1| hypothetical protein CLOSS21_01945 [Clostridium sp. SS2/1]
gi|291559258|emb|CBL38058.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SSC/2]
Length = 383
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 72/356 (20%), Positives = 142/356 (39%), Gaps = 26/356 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M+ + + ++ +I + AE ++D +G ++ E D AS TK
Sbjct: 1 MKTIVSVFLYVIICSIQIYAVSAEEINLNAKAAVIMDAESGKILYEKSKDQKMPNASTTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
++T + L +SKNA+ P ++G + + L L+++S ND
Sbjct: 61 ILTCLYILKHCD-----LDQMAEVSKNAAMQPKVRLGVREGEKYKVKDLLYGLMLESYND 115
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILS 174
AV +AE + + F + MN ++NLG THF+ +G+ H TTA+D+A +
Sbjct: 116 CAVVLAEHAEGSVENFEKRMNQMAENLGTLNTHFVTPNGLDGIDKKGRHETTAQDLAKIM 175
Query: 175 WRIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
R + Q++ Q K + N N + + G KTG+T +G+
Sbjct: 176 ARCIKN-QQFLEITQTKQYTFTDGSRKRRFICNNHNALLSSMQGVISGKTGYTSKAGYCY 234
Query: 229 VASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQ 282
V + Q + ++ +L + + + K L+ + R+ I + I + +
Sbjct: 235 VGAVKQKNMTMTFSVLASGWPPHKTYKWKDVRKLVQYATDHYERREIIADTSKIKEISIK 294
Query: 283 QNLSNEVPNISEEVCT--TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
L +V + + K+ + ++ + +K+ +K I K
Sbjct: 295 NGLKEKVLLKTGNLKAAFLVKKTDKIKIESILPSFIDAPVKEGQKVGEIKYLINGK 350
>gi|225389445|ref|ZP_03759169.1| hypothetical protein CLOSTASPAR_03193 [Clostridium asparagiforme
DSM 15981]
gi|225044492|gb|EEG54738.1| hypothetical protein CLOSTASPAR_03193 [Clostridium asparagiforme
DSM 15981]
Length = 448
Score = 148 bits (372), Expect = 1e-33, Method: Composition-based stats.
Identities = 61/279 (21%), Positives = 102/279 (36%), Gaps = 26/279 (9%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P L D TG V+ D AS TK+MT +
Sbjct: 57 PAQPDPLKLNAQSAVLADGLTGRVLYGKGEDTIRPMASTTKIMTCILALE-----LGNPD 111
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+T +K A+ P + + G T L + L L+++S ND AV IAE + + F +
Sbjct: 112 DVVTATKEAAGQPKVHLGVQSGQTFYLKDLLYSLMLESHNDAAVMIAEHIGGSVPGFARL 171
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHG---------HYTTARDMAILSWRIKT---DFPQYM 185
MN +K LG T+F+ +G+ H TTA D+A + +++
Sbjct: 172 MNEKAKALGCENTYFITPNGLDAKETDEAGVEHVHSTTAADLARIMAYCVNLSPKRQEFL 231
Query: 186 HYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
Q + N N + G KTGFT +G++ VA+ + +
Sbjct: 232 EITQTQNYFFTDVPGKHSYNCTNHNAFLTMMDGVVSGKTGFTGGAGYSYVAAMEKDGRPY 291
Query: 240 IAVILGA---LDRNTRNKVSASLLSMGFYNKTDRKKINY 275
+ +LG + + + L + G + +
Sbjct: 292 VIALLGCGWPPHKTWKWADARKLFNFGLEHYQMKDVYEE 330
>gi|152975284|ref|YP_001374801.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152024036|gb|ABS21806.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
391-98]
Length = 339
Score = 148 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 75/260 (28%), Positives = 132/260 (50%), Gaps = 12/260 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D + G VI +N + + PAS++K+MTAY++ + + K + IS
Sbjct: 70 PVVEAKAAIIIDASDGEVIYQNNENETFAPASMSKMMTAYLLLENIHKGKVHWEDQVKIS 129
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+++ + + +T+ + L+++SAN+ AVA+AE + KTEK FVQ MN +K
Sbjct: 130 AKSAQTEGAKIPLQMNDVVTVKDLFHALMIQSANNAAVALAEHMAKTEKNFVQIMNQKAK 189
Query: 144 NLGLSA-THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+L LS T F NA G+ A D+A L++ + ++P+ + ++ ++ K
Sbjct: 190 DLELSNKTKFANASGLQEPDGSETKMPAADVAKLAYHLIKEYPEILEVTHLRRSQLAFKN 249
Query: 200 YP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
NT G DG+KTGFT ++G+ +A QGD+ +I V++G +
Sbjct: 250 ISVTSTNEMLNTANKNLHIEGMDGLKTGFTDSAGYCFTGTAKQGDKRIITVVMGTKSQTK 309
Query: 252 RNKVSASLLSMGFYNKTDRK 271
R + L+S GF +RK
Sbjct: 310 RFTETHKLMSYGFEFVNERK 329
>gi|212638873|ref|YP_002315393.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
WK1]
gi|212560353|gb|ACJ33408.1| D-alanyl-D-alanine carboxypeptidase [Anoxybacillus flavithermus
WK1]
Length = 345
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 115/296 (38%), Gaps = 15/296 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L++ TG V+ E AS+TK+MTA + K ++ +T+S+
Sbjct: 2 SVSAKSAILMEQTTGRVLFEKDAHTKRRIASITKIMTAILAIESGKWEEL-----VTVSE 56
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S+ K G + L + + L+++S ND AVAIAE + + + FV MN +
Sbjct: 57 RAVRTEGSSIYLKPGEKIALKHLVYGLMLRSGNDAAVAIAEHVGGSVEGFVFLMNKKAAE 116
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----- 199
+G++ T F N HG+ ++ + L R Q+ K
Sbjct: 117 IGMTNTEFANPHGLDDAENHYSTAYDMALLMRYAMQNEQFREVSGTKLYRAPNPTEDWDR 176
Query: 200 -YPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ N N + + G KTG+T + +V +A + LIAV + A D
Sbjct: 177 IWRNKNKLLTHLYKYCTGGKTGYTKRAKRTLVTTASKDGLDLIAVTIDAGDD---WNDHM 233
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
++ GF + I + Q ++ + + + +++
Sbjct: 234 AMYEHGFAHYELVTVKADEIVEQIQDPFYDKRLFVVRDFIYPVTKKEEALIRLERK 289
>gi|317496761|ref|ZP_07955091.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
5_1_63FAA]
gi|316895773|gb|EFV17925.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
5_1_63FAA]
Length = 383
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 73/356 (20%), Positives = 143/356 (40%), Gaps = 26/356 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M+ + + ++ +I + AE ++D +G ++ E D AS TK
Sbjct: 1 MKTIVSVFLYVIICSIQIYAVSAEEINLNAKAAVIMDAESGKILYEKSKDQKMPNASTTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
++T + L +SKNA+ P ++G + + L L+++S ND
Sbjct: 61 ILTCLYILKHCD-----LDQMAEVSKNAAMQPKVRLGVREGEKYKVKDLLYGLMLESYND 115
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILS 174
AV +AE + +KF + MN ++NLG THF+ +G+ H TTA+D+A +
Sbjct: 116 CAVVLAEHAEGSVEKFEKRMNQMAENLGTLNTHFVTPNGLDGIDKKGRHETTAQDLAKIM 175
Query: 175 WRIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
R + Q++ Q K + N N + + G KTG+T +G+
Sbjct: 176 ARCIKN-QQFLEITQTKQYTFTDGSRKRRFICNNHNALLSSMQGVISGKTGYTSKAGYCY 234
Query: 229 VASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQ 282
V + Q + ++ +L + + + K L+ + R+ I + I + +
Sbjct: 235 VGAVKQKNMTMTFSVLASGWPPHKTYKWKDVRKLVQYATDHYERREIIADTSKIKEISIK 294
Query: 283 QNLSNEVPNISEEVCT--TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
L +V + + K+ + ++ + +K+ +K I K
Sbjct: 295 NGLKEKVLLKTGNLKAAFLVKKTDKIKIESILPSFIDAPVKEGQKVGEIKYLINGK 350
>gi|46202335|ref|ZP_00208483.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
magnetotacticum MS-1]
Length = 404
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 93/257 (36%), Positives = 140/257 (54%), Gaps = 3/257 (1%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+A+ + + AE +D +G VIAE+ P +PASLTK+MTAYV F
Sbjct: 1 MLALGLALPTGMVRAEP---SASLAVDLGSGTVIAESRGGMPHHPASLTKMMTAYVAFGA 57
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+K K IT+S+ A+ + G ++L ALK +IV+SAND AVA+AE +
Sbjct: 58 IKAGKVSQDDIITVSERAASQGGATLDLGPGERISLGAALKAMIVRSANDAAVAVAEHVA 117
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+E F M + LG++++ F NA G+ GH ++ RDMAIL+ I+ DFP + F
Sbjct: 118 GSESAFAVRMTEEAARLGMTSSSFRNATGMTAAGHVSSPRDMAILAMAIERDFPAFRPMF 177
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ KG+ P N +G + GA+GMKTGFTC++G+N+VA A +G + +AV++GA
Sbjct: 178 SSRDTTWKGRVLPTVNGFLGAYAGAEGMKTGFTCSAGYNLVAIAHRGGRRALAVVMGAGS 237
Query: 249 RNTRNKVSASLLSMGFY 265
R L+
Sbjct: 238 SAERLGAIRRLMDQALQ 254
>gi|167748674|ref|ZP_02420801.1| hypothetical protein ANACAC_03448 [Anaerostipes caccae DSM 14662]
gi|167651988|gb|EDR96117.1| hypothetical protein ANACAC_03448 [Anaerostipes caccae DSM 14662]
Length = 374
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 33/300 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA---------------ETNKLPYYTLLDTNTGHVIAENY 46
++ LV++ A+L + A + L+D TG ++
Sbjct: 6 KRLLVMLTAAVLVTAGTVPAKAAERGLATKEDTNADKPSINGVCGILMDAKTGKILYAKN 65
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMT 103
D PAS+TK++T V L + + S++A + K G +
Sbjct: 66 IDKKSYPASITKILTTLVAIENND----DLYSTVKFSRHAVNSIEPGSTHIGIKAGEEIP 121
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
L + L ++++SAN+ +AE + +KF MN +K +G +HFMN +G+ H
Sbjct: 122 LMDVLYGIMLESANEACNGVAEHTSGSIEKFADLMNKKAKEIGCKGSHFMNPNGLHNDKH 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNTNWA----VGTFLGA 213
Y TARDMA+++ + K N + + + G
Sbjct: 182 YVTARDMALITKAALQNPMFRKIACSSHYFMSGTNKEKKGRELWNHHKMVKQTMFLYKGV 241
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
+G KTG+T +G +V A +GD LI+VIL + + L GF N
Sbjct: 242 EGGKTGYTTRAGGTLVTFAKRGDTELISVILRGNGYEL-YRDTIKLFDYGFKNYKSVAPF 300
>gi|218288835|ref|ZP_03493086.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
acidocaldarius LAA1]
gi|218240924|gb|EED08101.1| Serine-type D-Ala-D-Ala carboxypeptidase [Alicyclobacillus
acidocaldarius LAA1]
Length = 289
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 12/263 (4%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ + + + D V+ + D P PAS TKLMTA ++
Sbjct: 22 AMFAVLAPWAQAEATRPPAVNAKAAVVYDATNRKVLYDKRGDEPMYPASTTKLMTAILLV 81
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
P+ IS+ AS P + G+ +T + AL LI+KSAND+A IAE+
Sbjct: 82 QH-----LQPDDPVYISETASRQPRVRLGLRPGTELTAEQALLALIMKSANDVAYGIAET 136
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +++ F + MN ++ +G + T F+ +G+ H T+A+D+A+++ + T +P+ +
Sbjct: 137 IGGSQEGFARMMNVEARLIGCTHTQFVTPNGLHADAHTTSAKDIALITAKAIT-YPRIVR 195
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQ--GDQSLI 240
Q I GK N N + + G KTGFT + + + + + L+
Sbjct: 196 AMQTPQATIAGKTIRNGNRLLYSPPASIGEFIGGKTGFTSRAMYCLATAVRRPSDGHVLV 255
Query: 241 AVILGALDRNTRNKVSASLLSMG 263
+V+ GA ++ + + LL+
Sbjct: 256 SVVFGAPRKSLMYRETVRLLTWA 278
>gi|323487044|ref|ZP_08092353.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum
WAL-14163]
gi|323399635|gb|EGA92024.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum
WAL-14163]
Length = 486
Score = 147 bits (371), Expect = 2e-33, Method: Composition-based stats.
Identities = 73/265 (27%), Positives = 112/265 (42%), Gaps = 25/265 (9%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
L D + E D + PAS+TKLMTA +V L
Sbjct: 91 ASGSLETPVVASQGAVLYDALNNRFLFEQNADTRFYPASITKLMTALLVLERS-----SL 145
Query: 77 TTPITISKN---ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+T S+N E K G ++ + + L++KSAN++A +AE + +
Sbjct: 146 DDTVTFSENAVTNLEAGAVTLKIKAGDKFSVKDCMYALLLKSANEVANGLAEHVAGSVSG 205
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK-------------TD 180
F MN + +LG + THF+N +G+ HYTTARDMA+++ D
Sbjct: 206 FADLMNQKAASLGCTNTHFVNPNGLNDSNHYTTARDMALIAKAAFENQTLSQIASTVSYD 265
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FP ++ L + K N + G G KTG+T +G +V A + + LI
Sbjct: 266 FPATASVPTVRKLTMGHKMVNPAN--GEYYQGIVGGKTGYTSLAGNTLVTCAERDGKRLI 323
Query: 241 AVILGALDRNTRNKVSASLLSMGFY 265
AV+L + T + +LL GF
Sbjct: 324 AVVL--KSKQTHYTDTKALLDYGFA 346
>gi|116627039|ref|YP_819658.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
[Streptococcus thermophilus LMD-9]
gi|116100316|gb|ABJ65462.1| D,D-carboxypeptidase PBP3. Serine peptidase. MEROPS family S11
[Streptococcus thermophilus LMD-9]
gi|312277502|gb|ADQ62159.1| D,D-carboxypeptidase PBP3 [Streptococcus thermophilus ND03]
Length = 417
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 79/369 (21%), Positives = 145/369 (39%), Gaps = 35/369 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ II +A++ ++A+ + ++T TG V+ E P A
Sbjct: 3 MKKLQHIIMIALILIGLATPALAQDQTDSFNVAAKHAIAIETTTGKVLYEKDATTPDGVA 62
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLL 111
S+TK++TAY+V+ + + K T + IS ++ T+ L
Sbjct: 63 SMTKILTAYMVYKAVDQGKITWDTEVGISDYPFNLTVDSEVSNVPLDSRKYTVKQLLDAT 122
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
++ SAN A+A+AE + TE FV M K G++ NA G+
Sbjct: 123 LISSANSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGS 182
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA----VGTFLG 212
+ +A D+AI++ + D+PQ + + ++ K N+ G
Sbjct: 183 KPDDENTMSALDIAIIADHLIKDYPQVLEITKQTEVDFEGDNKLTTHNYMLEGQENYREG 242
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNTRNKVSASLLSMGFYNKT 268
DG+KTG T +G + VA + + SLI V++ G D + R + LL N
Sbjct: 243 VDGLKTGTTELAGASFVAHSNENGMSLITVVMNAYNGGDDESARFTATNELLDYVTQNWE 302
Query: 269 DRKK--INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK-ESHFIDFEK 325
+ I+K + + IS + + + N++ K + ++ +K
Sbjct: 303 IKTLNTNGQIVKKNDIKVADGDRKTISARLESDLTVVQKINSRNDSVKIQAKTVTAPIKK 362
Query: 326 ITLLKNKIT 334
+ I
Sbjct: 363 GDTIGTAIY 371
>gi|331002378|ref|ZP_08325896.1| hypothetical protein HMPREF0491_00758 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330410194|gb|EGG89628.1| hypothetical protein HMPREF0491_00758 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 483
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 77/341 (22%), Positives = 141/341 (41%), Gaps = 23/341 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ + ++ + + + L+D ++G V+ + PAS+TK++TA
Sbjct: 17 FITVFSLPLKALAYVDWPANANILSEGAILMDADSGAVLYGKNIHEHYYPASITKILTAL 76
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
+V L +T SKNA S++ G T+T+ + L ++++SAN+ A
Sbjct: 77 IVVENC-----NLDDIVTFSKNAVYNVEAGSSSAGLDVGDTLTVRDCLYAMLLQSANEAA 131
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + ++F MN + NLG + +HF+N G+ HYT+A D A++S +
Sbjct: 132 NALAEHTAGSIEEFANMMNQKASNLGCTDSHFVNPSGLNSPDHYTSAYDYALISRAAFMN 191
Query: 181 FPQ------YMHYFQIKGLEIKGKKYPNTNWAVG-----TFLGADGMKTGFTCASGFNIV 229
+ G+ N + + + A KTG+T +G +V
Sbjct: 192 PIVTEIDSATYYNLPPSKRVPTGQTIYNHHSMLRKTSGNYYQNAICGKTGYTTLAGNTLV 251
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
A LI V+L T + LL+ GF N + K I + N+ + +
Sbjct: 252 TYARNDQIGLITVVLNGN--KTHYTDTQELLNFGFANFKNIKLSTADITTKFSSNI-SMI 308
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
P+ +E + + + + +DFE + L
Sbjct: 309 PDFNEYIIEPDDNA-SISLPNNADINDIKSTMDFESVAGLP 348
>gi|229090529|ref|ZP_04221765.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
gi|228692796|gb|EEL46519.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
Length = 310
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 78/313 (24%), Positives = 126/313 (40%), Gaps = 17/313 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 5 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 64
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K + +S A S K G + L++ + L+++S
Sbjct: 65 TKIMTALLAAESGKMK-----ERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 120 NDAAQVIAENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 179
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 180 YAMGN-ETFKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 238
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ LI V L A +L GF K + +
Sbjct: 239 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYT 295
Query: 293 SEEVCTTQKEIIN 305
E
Sbjct: 296 KNSFSVPLTEEEK 308
>gi|197303547|ref|ZP_03168586.1| hypothetical protein RUMLAC_02269 [Ruminococcus lactaris ATCC
29176]
gi|197297545|gb|EDY32106.1| hypothetical protein RUMLAC_02269 [Ruminococcus lactaris ATCC
29176]
Length = 434
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/284 (23%), Positives = 115/284 (40%), Gaps = 21/284 (7%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
++ + L+D ++G ++ E P AS TK+MT +
Sbjct: 53 LTVYTDAGESLELYARSAVLMDGDSGRILFEKNGSDPRPMASTTKIMTCILALEASD--- 109
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ IT+S A+ P + +G + L + L L+++S ND AVAIAE + + +
Sbjct: 110 --PSRKITVSSQAASQPKVHLGMTEGQSFYLKDLLYSLMLESHNDAAVAIAEGIDGSVEA 167
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQH----GHYTTARDMAILSWRIKT---------D 180
F Q MN ++ +G T+F++ +G+ H+TTAR++A++
Sbjct: 168 FAQRMNQKAEEIGCKNTYFISPNGLDAQDSQSNHHTTARELALILRYCIMVSPQREAFLK 227
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ M Y + N N + GA KTGFT +G+ V + + D++ I
Sbjct: 228 ITRTMQYTFQDCEKNFSYSCNNHNAFLNMMEGALTGKTGFTADAGYCYVGALQRDDRTFI 287
Query: 241 AVILGALDRNTR---NKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+L N R + L++ G N R F
Sbjct: 288 VALLACGWPNNRNYKWMDTKKLMTYGLENYVYRDFQVKAAPHFV 331
>gi|167746445|ref|ZP_02418572.1| hypothetical protein ANACAC_01155 [Anaerostipes caccae DSM 14662]
gi|167653405|gb|EDR97534.1| hypothetical protein ANACAC_01155 [Anaerostipes caccae DSM 14662]
Length = 383
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 68/358 (18%), Positives = 143/358 (39%), Gaps = 28/358 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ +I L F ++ L+D +G V+ + AS
Sbjct: 1 MKKIFCVIWSLFLCLQLGFHTVRADDTLKLYAKSAILMDAGSGRVLFDKSGKSKMPNAST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK++T + L T+SKNA+ P + + G + + L L+++S
Sbjct: 61 TKILTCLYIIKHC-----NLEEEATVSKNAAAQPQVHLGARAGEKYKVKDLLYGLMLESY 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAI 172
ND AV +AE + + F + +N +++ G +THF+ +G+ H TTA D+A+
Sbjct: 116 NDCAVILAEHAAGSTENFAKKLNAEARSYGAKSTHFVTPNGLDRTDKNGIHSTTAYDLAL 175
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGF 226
+ + + +++ + K N N + GA KTGFT +G+
Sbjct: 176 IMKQCIKN-KEFLEITRAKSHSFHDASGKRSFTCNNHNALLSMMDGAVSGKTGFTSKAGY 234
Query: 227 NIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDF 280
V + + ++IAV+L + + +L+ G N + K I + + +
Sbjct: 235 CYVGAVKKNGMTMIAVVLACGWPPHKTYKWSDVRTLVDYGAKNYSYHKIIPDYSKLTDLY 294
Query: 281 YQQNLSNEVPNISE--EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++V ++ + K+ + + + K + E++ ++ + +
Sbjct: 295 VNGGMEHKVSIEAKGGGMTLLLKKGEKVDIKCQIPKSLNAPVKKKEQVGKIEYVLNGR 352
>gi|317128665|ref|YP_004094947.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
cellulosilyticus DSM 2522]
gi|315473613|gb|ADU30216.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
cellulosilyticus DSM 2522]
Length = 390
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 76/331 (22%), Positives = 135/331 (40%), Gaps = 14/331 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA--ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++ FL+ + + + L+D++T ++ + P PAS+TK
Sbjct: 13 LKLFLLFAIIFSYIDNTSVFAEKKIPEITSEAAILIDSHTEEILFDKNMMEPMYPASITK 72
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
++TA + L +T+S +A + + +TL+ L+ L+V S ND
Sbjct: 73 IVTAIIAIETQD-----LNDIVTVSSDAVRAIGTRVYLLEDEEITLEQLLQGLMVSSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSK-NLGLSAT-HFMNAHGVVQHGHYTTARDMAILSWR 176
A+AIAE + + + F MN+ + +G+S +F N HG+ + H TTA DMA +S
Sbjct: 128 AAIAIAEHIDGSVEAFSDRMNDFVRTEVGVSDITNFTNPHGLFEEDHVTTAYDMAKISAY 187
Query: 177 IKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + N + ++ G+K GF SG+ + +AI
Sbjct: 188 AMKNETFRELVGTHSVEWVGEGWETIIYNHHPLTRSYDEVIGIKNGFVRMSGYTLSTAAI 247
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPN 291
LI+V L + RN K + +LL GF + + + + Y S V +
Sbjct: 248 DEHIELISVTLNSPSRNFAQKDTLTLLDYGFSHYETQVLTFEDEPLLKEYIYPDSVAVTS 307
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
+ E E N KE + + +D
Sbjct: 308 LKGEEIDYSIENGLINITGKENRLITTVELD 338
>gi|229043310|ref|ZP_04191030.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
gi|229144168|ref|ZP_04272582.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
gi|228639176|gb|EEK95592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
gi|228726024|gb|EEL77261.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
Length = 363
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 82/325 (25%), Positives = 126/325 (38%), Gaps = 13/325 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ A + I + I L++ +G V+ P AS+TK+MTA +
Sbjct: 1 MMYASVMPIPTYAKINSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAE 60
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
K K +++S A S K G + L++ + L+++S ND A IAES+
Sbjct: 61 SGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESV 115
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ FV MN +K +G+ THF N HG+ HY++A DMA+L+ + +
Sbjct: 116 GGSIDGFVYLMNQKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKK 174
Query: 187 YFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
F K + YP N + A G KTGFT +G +V +A +G LI V
Sbjct: 175 IFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVT 234
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
L A +L GF K + + E
Sbjct: 235 LSASSD---WDDHMNLFDKGFDRFKQTKVLGQGAIAEINEKKYANHVYTKNSFSVPLTEE 291
Query: 304 INYNTQMKEAKDKESHFIDFEKITL 328
N +K DK + D K+
Sbjct: 292 EKKNVVLKVELDKSTKLTDGVKVGK 316
>gi|30020090|ref|NP_831721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|29895640|gb|AAP08922.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
Length = 279
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 71/261 (27%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 15 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 74
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
P+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 75 WEDPVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 134
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 135 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAGDVAQLAYHLIKDYPEILEVTHLR 194
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 195 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 254
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L+S F
Sbjct: 255 MGTSSKTKRFTETNKLMSYAF 275
>gi|187779546|ref|ZP_02996019.1| hypothetical protein CLOSPO_03142 [Clostridium sporogenes ATCC
15579]
gi|187773171|gb|EDU36973.1| hypothetical protein CLOSPO_03142 [Clostridium sporogenes ATCC
15579]
Length = 378
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 78/341 (22%), Positives = 137/341 (40%), Gaps = 23/341 (6%)
Query: 3 QFLVIIAMAMLSNIFPFLS---------IAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
+F++I+++ + + P + +D +TG V+ E +
Sbjct: 8 KFILILSLIFIVTLIPTKAYGKEESQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPI 67
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK+MT V + L I IS+NA + S +KKG +TL L L++
Sbjct: 68 ASTTKIMTTLVALKY-----GDLDRKIEISENADKIKGSTVGYKKGEKITLRELLYGLML 122
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD---- 169
+S ND A+AIAE + + + F + MN + +GL +HF+ HG+ + HY+TA D
Sbjct: 123 RSGNDAAIAIAEGIAGSVEGFSKLMNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALA 182
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
A + + + + Y N N + ADG+KTG+T +G +V
Sbjct: 183 TATAKKYELFNKIVSSKDVKKEEYSF-TRDYHNINKILWKIPEADGVKTGYTGKAGKCLV 241
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
S+ +I V+L R + + N +K V
Sbjct: 242 TSSKINGNDIIIVVLNCT---PRWNETTKIHDYVKNNYDFKKICTKGDILDQAVFEEGSV 298
Query: 290 PNISE-EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
I++ ++ K NY+ ++ + K+ E +
Sbjct: 299 NIIADKDIIIPFKNGANYSIKINKPKELNWKVKKGEDFGSI 339
>gi|257456802|ref|ZP_05621986.1| D-alanyl-D-alanine carboxypeptidase DacA [Treponema vincentii ATCC
35580]
gi|257445808|gb|EEV20867.1| D-alanyl-D-alanine carboxypeptidase DacA [Treponema vincentii ATCC
35580]
Length = 480
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 77/303 (25%), Positives = 120/303 (39%), Gaps = 22/303 (7%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
++ L+ + ++D +G ++ E PD PASLTKL+ Y V
Sbjct: 66 SLLHLAPCTRDIPQPAAISARSAVVMDAASGALLFEKNPDQSIPPASLTKLVAMYTVMQA 125
Query: 69 LKEKKAMLTTPITISKNASEYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
++ + L+ I K + K +T++ + + V S ND AVA+A
Sbjct: 126 VERGEINLSDRIIPPKESWAVNIPPGSSLMFLGKNQQVTVEELMLGVAVVSGNDAAVALA 185
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
+ FVQ MN LGL THF + +G+ + TTARD A S +P++
Sbjct: 186 IHTAGSVAAFVQRMNEAVAALGLQNTHFEDVNGL-SEYNRTTARDFARFSAVYVRKYPEH 244
Query: 185 -----------MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ P TN + G DG+KTGF SGFNI +A
Sbjct: 245 LARFHSARELTYPQPHNMLKSQTSFRQPATNTLLDKLDGCDGIKTGFIYESGFNIALTAQ 304
Query: 234 QGDQSLIAVILG------ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ IAVILG A + R L+ F + + R N+ ++ +
Sbjct: 305 RDGNRFIAVILGGAGKNMAEGKALREANGKILMEWTFSHFSTRYAQNFPLELPIIPVMGA 364
Query: 288 EVP 290
+ P
Sbjct: 365 KEP 367
>gi|328464600|gb|EGF35965.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus MTCC
5463]
Length = 431
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 71/373 (19%), Positives = 141/373 (37%), Gaps = 46/373 (12%)
Query: 4 FLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
+ +I++ F + A+ + +D+N+G V+ D A
Sbjct: 14 LVALISLVSCGATFSAPAKADVANYQTDQVKLNVKSAIAIDSNSGQVLYAKNADKTLPIA 73
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPIT----ISKNASEYPPSNSTFKKGSTMTLDNALKL 110
S+TKLMT Y+ + +K +K + I K A+ SN K G + T+ +
Sbjct: 74 SMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKVANNAEYSNVPLKMGHSYTIKQLYQA 133
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------- 162
+++SAN A+ + +++ ++K F+ M + K G+ A G+
Sbjct: 134 TLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKWGIKDAKIYTACGLPNGNVGKDAYPG 193
Query: 163 ------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTNWA------ 206
+ +A+DMAI+ + DFP+ + ++ L+ K N NW
Sbjct: 194 VNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLAHLDFKDQGHTTKMANFNWMLKGLSQ 253
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSM 262
DG+KTG T A+G + + LI V++GA R + L++
Sbjct: 254 YDQTYPVDGLKTGTTDAAGACFIGTVNHAGARLITVVMGARHKDGTDPARFMQTKKLMNY 313
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN----TQMKEAKDKES 318
F N + +N+ + + +++ ++ + +K++
Sbjct: 314 VFTKYRPVT-FNAGSQMAGVKNIKVTDGDNATTNLGLKEKTTIWDPADGKTLVAKLNKQT 372
Query: 319 HFIDFEKITLLKN 331
K ++ N
Sbjct: 373 IEAPITKGQVVGN 385
>gi|300853932|ref|YP_003778916.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
13528]
gi|300434047|gb|ADK13814.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium
ljungdahlii DSM 13528]
Length = 408
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 85/360 (23%), Positives = 139/360 (38%), Gaps = 31/360 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ + + +L + +LD TG ++ PD + PA
Sbjct: 1 MKRIVTFALLFLLICSNNPYGVVHAKEMPPPVSADGAVILDAATGQLLYSKNPDTAYPPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S TK+MTA + L + I KN + +G +T+ + L L++
Sbjct: 61 STTKIMTALLTLENT-----NLNDKVIIGKNPPNVDGTRVGLCEGEQLTVKDLLYGLLLA 115
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S ND A A+AE + T KFV MN +K LG T+F+N G+ H T+ARD+A++
Sbjct: 116 SDNDCAEALAEHIGGTMDKFVVKMNKRAKELGAKNTNFVNPTGLFDESHKTSARDLALMM 175
Query: 175 WRIKTDFPQYMHYFQI------KGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCA 223
+ I + ++ N N + + G G KTG+T
Sbjct: 176 RALSKHPEYSKIATTISYTIPATNKSPQPREVWNENKLIQKQSTYYYSGCLGGKTGYTVQ 235
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
S + V++A + Q LI ++ ++ T + SL + GF N T K
Sbjct: 236 SFHSYVSTATRNGQQLIVALIHDKNK-TFFPDAVSLFNFGFNNFTFTKLYQKGALVTTYN 294
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL--------KNKITK 335
+P I+ K + N KDK F F+K ++ +I K
Sbjct: 295 KDGLSIPLIAAYDFYYIKPKDDTNVPQVTLKDKNLMFRFFKKGDIVDEASISFEGKEIGK 354
>gi|290968005|ref|ZP_06559554.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera genomosp.
type_1 str. 28L]
gi|290781911|gb|EFD94490.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera genomosp.
type_1 str. 28L]
Length = 321
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 73/267 (27%), Positives = 125/267 (46%), Gaps = 13/267 (4%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + P LLD NTG ++ + + +PAS TK++T
Sbjct: 29 AFSVPLPEVSSPTAEAEPVTAAESACLLDVNTGKILFSYHGNKWVHPASTTKIVTLLTAL 88
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ + L P+ IS+ A E PS +++ AL ++V S ND AVA+AE+
Sbjct: 89 ---AQGRERLEQPLYISRQAVETEPSRLGLATTDKVSVREALTGMMVVSGNDAAVAVAET 145
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
L + F MN +K +G + + F+N +G+ Q H+TTA DMA ++ ++ ++
Sbjct: 146 LGGSVPAFADMMNGQAKKMGATHSLFLNPNGLTQVHHHTTAIDMARMAAYGMKNYAEFRD 205
Query: 187 YFQIKGLEIKG-------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+K +K Y + ++GADG+KTG+T A+G +VASA + +L
Sbjct: 206 IVGLKSYTMKYLDAHKPKTVYTTNRFLRSGYIGADGIKTGYTRAAGPCLVASATRNGHTL 265
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYN 266
I + R + +A +L GF +
Sbjct: 266 IVALFN---DAARWQDAARILDYGFRH 289
>gi|225388033|ref|ZP_03757757.1| hypothetical protein CLOSTASPAR_01767 [Clostridium asparagiforme
DSM 15981]
gi|225045886|gb|EEG56132.1| hypothetical protein CLOSTASPAR_01767 [Clostridium asparagiforme
DSM 15981]
Length = 510
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 68/282 (24%), Positives = 111/282 (39%), Gaps = 20/282 (7%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
LL+ +TG ++ D + PAS+TKLMTA +V L
Sbjct: 136 TAVEEPVIAAEGAALLNASTGKLLFSKNGDTKFYPASITKLMTALLVAENC-----NLDD 190
Query: 79 PITIS---KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+T S E + +G +T+ L L++KSAN++ A+AE + + KF
Sbjct: 191 TVTFSSTATTNLEAGAVSLNLVEGDKLTVRQCLYALLLKSANEVGNALAEHVAGSNAKFA 250
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY-------MHYF 188
MN + LG + THF N HG+ + HYTT DMA+++ +
Sbjct: 251 DMMNARAAALGCTNTHFTNPHGLNDNDHYTTPNDMALIAKAAFENGTVRTVASTLSYDLP 310
Query: 189 QIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
K + + + G G KTG+T +G +V + + LIAV++
Sbjct: 311 ATKKNAARTISIGHKMLYPNDSRYYAGIIGGKTGYTSKAGNTLVTAVERDGVRLIAVVM- 369
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
++T + +LL GF + N +
Sbjct: 370 -KSKSTHYTDTKALLDYGFELAKQQTTEGADDSGPGTGNPTA 410
>gi|55822070|ref|YP_140511.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
[Streptococcus thermophilus CNRZ1066]
gi|55738055|gb|AAV61696.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
[Streptococcus thermophilus CNRZ1066]
Length = 422
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 79/369 (21%), Positives = 145/369 (39%), Gaps = 35/369 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ II +A++ ++A+ + ++T TG V+ E P A
Sbjct: 8 MKKLQHIIMIALILIGLATPALAQDQTDSFNVAAKHAIAIETTTGKVLYEKDATTPDGVA 67
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLL 111
S+TK++TAY+V+ + + K T + IS ++ T+ L
Sbjct: 68 SMTKILTAYMVYKAVDQGKITWDTEVGISDYPFNLTVNSEVSNVPLDSRKYTVKQLLDAT 127
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
++ SAN A+A+AE + TE FV M K G++ NA G+
Sbjct: 128 LISSANSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGS 187
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA----VGTFLG 212
+ +A D+AI++ + D+PQ + + ++ K N+ G
Sbjct: 188 KPDDENTMSALDIAIIADHLIKDYPQVLEITKQTEVDFEGDNKLTTHNYMLEGQENYREG 247
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNTRNKVSASLLSMGFYNKT 268
DG+KTG T +G + VA + + SLI V++ G D + R + LL N
Sbjct: 248 VDGLKTGTTELAGASFVAHSNENGMSLITVVMNAYNGGDDESARFTATNELLDYVTQNWE 307
Query: 269 DRKK--INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK-ESHFIDFEK 325
+ I+K + + IS + + + N++ K + ++ +K
Sbjct: 308 IKTLNTNGQIVKKNDIKVADGDRKTISARLESDLTVVQKINSRNDSVKIQAKTVTAPIKK 367
Query: 326 ITLLKNKIT 334
+ I
Sbjct: 368 GDTIGTAIY 376
>gi|114705796|ref|ZP_01438699.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
gi|114538642|gb|EAU41763.1| penicillin-binding protein [Fulvimarina pelagi HTCC2506]
Length = 356
Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats.
Identities = 90/253 (35%), Positives = 134/253 (52%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
P + ++D T V+ HPW PAS TKLM+AYV F L+
Sbjct: 12 AVIGLPLILTTPFAHATPALVVDAGTRAVLFAEEAGHPWYPASTTKLMSAYVTFEALRAG 71
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ L TP+TISK A ++ G M L++AL ++V SAN++++++AE + + +
Sbjct: 72 EVSLDTPVTISKRAMTEASLHAGLSAGRAMRLEDALFAMVVGSANEVSISLAERVAGSVE 131
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F MN T+ LG++AT F N +G+ +TTARD+A+L DFP+Y F
Sbjct: 132 AFAARMNATAARLGMTATRFDNPNGLFAASQHTTARDLALLGLAATRDFPEYRELFTTSI 191
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ I GKK N + F G G+KTGF CASG N+VA A + + ++ V+LGA R
Sbjct: 192 VVIDGKKLETENVLLTDFPGTLGLKTGFLCASGRNLVAMAERDGRRILVVLLGATTGRER 251
Query: 253 NKVSASLLSMGFY 265
+ +A L+S F
Sbjct: 252 AERAAKLMSEAFA 264
>gi|332366179|gb|EGJ43934.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK355]
Length = 422
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/375 (17%), Positives = 129/375 (34%), Gaps = 41/375 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + + + +D +G ++ E P S+T L+
Sbjct: 1 MKRLFLCFLVLVGLTASKVAADDYNIAAKSAMAVDATSGKILYEKDATTPIEVGSITNLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + T + IS A P ++ + + + + ++ SAN
Sbjct: 61 TVYLVYEAIDRGDLTADTYVDISDYAYNLTANPNISNVPLEARRYKVKDLIAASLMSSAN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FVQ M K G++ +N+ G+
Sbjct: 121 SATIALAEKVGGSEENFVQMMKAKLKEWGITDATVVNSTGLNTLLLEYASEETDYTASAS 180
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGT 209
+ +A D+A++S + DFPQ +I G N N+
Sbjct: 181 TSKKNKDSENKFSAYDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSNF 240
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFY 265
G DG+K G + G + VA+ + +I V+L D R +ASL++
Sbjct: 241 RSGVDGLKAGSSEKGGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQ 300
Query: 266 NKTDRKKINYIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N T + S++ ++ +++ + ++
Sbjct: 301 NFTQTTIVAEGEAYNKSHSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTKEQGF 360
Query: 320 FIDFEKITLLKNKIT 334
+K T L
Sbjct: 361 QAPLKKNTELGTLTY 375
>gi|260103243|ref|ZP_05753480.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus helveticus
DSM 20075]
gi|111610195|gb|ABH11586.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus
CNRZ32]
gi|260082956|gb|EEW67076.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus helveticus
DSM 20075]
Length = 431
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 68/373 (18%), Positives = 140/373 (37%), Gaps = 46/373 (12%)
Query: 4 FLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
+ +I++ F + A+ + +D+N+G V+ D A
Sbjct: 14 LVALISLVSCGATFSAPAKADVANYQTDQVKLNVKSAIAIDSNSGQVLYAKNADKTLPIA 73
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPIT----ISKNASEYPPSNSTFKKGSTMTLDNALKL 110
S+TKLMT Y+ + +K +K + I K A+ SN K G + T+ +
Sbjct: 74 SMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKVANNAEYSNVPLKMGHSYTIKQLYQA 133
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------- 162
+++SAN A+ + +++ ++K F+ M + K G+ A G+
Sbjct: 134 TLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKWGIKDAKIYTACGLPNGNVGKDAYPG 193
Query: 163 ------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF------ 210
+ +A+DMAI+ + DFP+ + ++ L+ K + +
Sbjct: 194 VNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLAHLDFKDQGHTTKMANFNWMLKGLSQ 253
Query: 211 ----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSM 262
DG+KTG T A+G + + LI V++GA R + L++
Sbjct: 254 YDQAYPVDGLKTGTTDAAGACFIGTVNHAGARLITVVMGARHKDGTDPARFMQTKKLMNY 313
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN----TQMKEAKDKES 318
F N + +N+ + + +++ ++ + +K++
Sbjct: 314 VFTKYRPVT-FNAGSQMAGVKNIKVTDGDNATTNLGLKEKTTIWDPADGKTLVAKLNKQT 372
Query: 319 HFIDFEKITLLKN 331
K ++ N
Sbjct: 373 IEAPITKGQVVGN 385
>gi|303230440|ref|ZP_07317201.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica
ACS-049-V-Sch6]
gi|302514979|gb|EFL56960.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica
ACS-049-V-Sch6]
Length = 279
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 71/272 (26%), Positives = 125/272 (45%), Gaps = 15/272 (5%)
Query: 3 QFLVIIAMA----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+F++ +A + + + + L+D + ++ PD +PAS TK
Sbjct: 9 RFILALAFIGAMLLGTVVHGAAPTPPSTIGEAVVLIDADNKEILFAKNPDKWMHPASTTK 68
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
++T K L TIS A+ SN + G +TL+ L+ ++V S ND
Sbjct: 69 MVTLLTALEL---KGTQLDELATISPYATSMEESNLGVQVGDQITLEGVLEGMMVASGND 125
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----S 174
AV +AE++ + + F + MN + G + F+N HG+ Q GH++TARD+A++
Sbjct: 126 AAVVVAENVSGSVENFAKDMNRIAAKAGAKNSVFLNPHGLTQMGHHSTARDLALIAAYGM 185
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAI 233
Y+++ + TN + + GA+G+KTGFT A+G ++ASA
Sbjct: 186 KYQMFRDKVANDYYKVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIASAT 245
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ ++I V+L + R + L GF
Sbjct: 246 RNGHTMIVVMLN---DDNRWNEAVQFLDYGFK 274
>gi|55820182|ref|YP_138624.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
[Streptococcus thermophilus LMG 18311]
gi|55736167|gb|AAV59809.1| D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
[Streptococcus thermophilus LMG 18311]
Length = 422
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 78/369 (21%), Positives = 145/369 (39%), Gaps = 35/369 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ II +A++ ++A+ + ++T TG V+ E P A
Sbjct: 8 MKKLQHIIMIALILIGLATPALAQDQTDSFNVAAKHAIAIETTTGKVLYEKDATTPDGVA 67
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLL 111
S+TK++TAY+V+ + + K T + IS ++ T+ L
Sbjct: 68 SMTKILTAYMVYKAVDQGKITWDTEVGISDYPFNLTVNSEVSNVPLDSRKYTVKQLLDAT 127
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
++ SAN A+A+AE + TE FV M K G++ NA G+
Sbjct: 128 LISSANSAAIALAEKISGTESTFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGS 187
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA----VGTFLG 212
+ +A D+AI++ + D+PQ + + ++ + N+ G
Sbjct: 188 KPDDENTMSALDIAIIADHLIKDYPQVLEITKQTEVDFEGDNELTTHNYMLEGQENYREG 247
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNTRNKVSASLLSMGFYNKT 268
DG+KTG T +G + VA + + SLI V++ G D + R + LL N
Sbjct: 248 VDGLKTGTTELAGASFVAHSNENGMSLITVVMNAYNGGDDESARFTATNELLDYVTQNWE 307
Query: 269 DRKK--INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK-ESHFIDFEK 325
+ I+K + + IS + + + N++ K + ++ +K
Sbjct: 308 IKTLNTNGQIVKKNDIKVADGDRKTISARLESDLTVVQKINSRNDSVKIQAKTVTAPIKK 367
Query: 326 ITLLKNKIT 334
+ I
Sbjct: 368 GDTIGTAIY 376
>gi|239624021|ref|ZP_04667052.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522052|gb|EEQ61918.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 482
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 66/357 (18%), Positives = 127/357 (35%), Gaps = 37/357 (10%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWN 52
MR+ +I+++ M+ + + A + ++D ++G V+
Sbjct: 1 MRRLSYIIVSLIMVLTMSSITAFARPDWPTDTGVQSEAGIVMDMDSGAVLFAQNIHEQKI 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNAL 108
PAS+TKL+TA VV L +T S +A + ++G +++ L
Sbjct: 61 PASITKLLTALVVIENCD----DLDDKVTFSHDAVYNVESGSGNKLALEEGDVLSVRECL 116
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+++++S+N A A+AE + + FV MN +LG +HF N G+ T+A
Sbjct: 117 YVMLLQSSNQAANALAEYIGGSRSGFVDMMNRKVADLGCQESHFANPSGLNDDTQRTSAY 176
Query: 169 DMAILSWRIKTDFP--------------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214
DMA+++ + + +V + A
Sbjct: 177 DMALIARAAFQNQQLLEISSTRKASIPATINNPDGRTFSMEHKLLITEDENSVEYYPDAV 236
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
KTG+T +G +V A +G + IAV L + + T + ++L GF + +
Sbjct: 237 AGKTGWTSQAGQTLVTYARRGGRGEIAVTLRS-TQKTHYSDTKTILDFGFARFQNVNIAD 295
Query: 275 ------YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ + + + E + D K
Sbjct: 296 NETEYVTGDTPVTIGGETYQPSELYIDKTAVITIPNEAGFTDAERELVTELPKDHPK 352
>gi|229190080|ref|ZP_04317086.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC
10876]
gi|228593409|gb|EEK51222.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus ATCC
10876]
Length = 317
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 70/261 (26%), Positives = 127/261 (48%), Gaps = 12/261 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I + + + PAS++K+MTAY++ + K
Sbjct: 53 VVPPKYIPPEINAKAAMIIDASDGDIIYQYNENEAFAPASMSKMMTAYLLLESIHNGKVR 112
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ +S A++ + + T+T+ + L+++SAN+ AVA+AE + K+EK FV
Sbjct: 113 WEDSVKMSAKAAQTEGARIPVQVNDTLTVKDLYHALMIESANNSAVALAEHMAKSEKDFV 172
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q M+ +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 173 QLMDAKAKQLKMSEHAKFANASGLQEPDGSETKMTAADVAQLAYHLIKDYPEILEVTHLR 232
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 233 QSQLAFNNINVISTNDMLNKNNKSLYIEGMDGLKTGFTDSAGYCFTGTAKQGDNRIITVV 292
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G ++ R + L+S F
Sbjct: 293 MGTSNKTKRFTETNKLMSYAF 313
>gi|311029700|ref|ZP_07707790.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
[Bacillus sp. m3-13]
Length = 414
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 77/318 (24%), Positives = 135/318 (42%), Gaps = 13/318 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ ++ M ++I L+D+ +G+ + E PAS+TK++TA
Sbjct: 10 IIPLLVMVFGNSITVHAEGPGDLFSESVILIDSKSGNTLYEKDSKREMYPASITKIVTAI 69
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ L +T+S+NA + + +G +TL ++ L++ S ND AI
Sbjct: 70 IAIEE-----GNLQDIVTVSENARDQDGTRVYLLEGEKVTLKKLVQGLLINSGNDAGTAI 124
Query: 124 AESLCKTEKKFVQHMNNTSKN-LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
AE L +EK F + MN K +G+ T+F N HG+ H TTA+DMA ++ +
Sbjct: 125 AEHLDGSEKAFAKRMNTFVKEKVGVKNTNFTNPHGLYHPDHVTTAQDMAKIAQYAMKNET 184
Query: 183 QYMHYFQIKGLEIKG---KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ I N + + + G G+K G+ SG +V SA + L
Sbjct: 185 FREIVGTKEMEWIGEGWETTLFNHHRLLWDYEGTTGVKNGYVPESGHTLVTSAKRDGMDL 244
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
I V + A + K + +LL GF N + I K + S +++ V
Sbjct: 245 IVVTMKAASKYYIYKDTMTLLDYGFANF----ITDEIKKGEMVTDASGREYMLAKNVHVA 300
Query: 300 QKEIINYNTQMKEAKDKE 317
+++ N ++ + KD
Sbjct: 301 KRDEETINLRVNKDKDLV 318
>gi|228997557|ref|ZP_04157170.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
gi|228762185|gb|EEM11118.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
Length = 329
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 11/274 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M L + A+L F F K L+D + ++ + D P++ ASL+K+M
Sbjct: 1 MLLILSFLITAILVFYFYFYVNGPLIKAKSAILIDATSEEIVYKKNEDTPFSSASLSKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+V +++ K + IS ++ + +N +T+ + +++ S N A
Sbjct: 61 TEYIVLEQIQKGKIKWDDRVKISNSSIQMEGNNIDITFEDQITIRDLFHAMVLASDNSAA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQHGHYT--TARDMAILSWRI 177
V +AE + K E+ F MN + LGLS T+F NA GV+ + TA D + L+ +
Sbjct: 121 VFLAEHISKNEQDFTNLMNEKATQLGLSNKTYFANATGVINKQEESKITALDASKLAQHL 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNIV 229
TD+P + Q+ + K N + G DG++T F+ +G++
Sbjct: 181 ITDYPMILEITQLTSYQFTFKDIHVFNTNKMLYSLDSKIKFKGVDGLQTSFSNPAGYSFA 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
++A QG++ I++++ A N+ + L + G
Sbjct: 241 STAKQGNKRFISIVMKANGENSAFIEAKKLFTYG 274
>gi|229005188|ref|ZP_04162908.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
gi|228756048|gb|EEM05373.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
Length = 329
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 69/274 (25%), Positives = 127/274 (46%), Gaps = 11/274 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M L + A+L F F K L+D + ++ + D P++ ASL+K+M
Sbjct: 1 MLLILSFLITAILVFYFYFYVNGPLIKAKSAILIDATSEEIVYKKNEDTPFSSASLSKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+V +++ K + IS ++ + +N +T+ + +++ S N A
Sbjct: 61 TEYIVLEQIQKGKIKWDDRVKISNSSIQMEGNNIDITFEDQITIRDLFHAMVLASDNSAA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQHGHYT--TARDMAILSWRI 177
V +AE + K E+ F MN + LGLS T+F NA GV+ + TA D + L+ +
Sbjct: 121 VFLAEHISKNEQDFTNLMNEKATQLGLSNKTYFANATGVINKQEESKITALDASKLAQHL 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNIV 229
TD+P + Q+ + K N + G DG++T F+ +G++
Sbjct: 181 ITDYPMILEITQLTSYQFTFKDIHVFNTNKMLYSLDSKIKFKGVDGLQTSFSNPAGYSFA 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
++A QG++ I++++ A N+ + L + G
Sbjct: 241 STAKQGNKRFISIVMKANGENSAFIEAKKLFTYG 274
>gi|324329337|gb|ADY24597.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 423
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 84/374 (22%), Positives = 141/374 (37%), Gaps = 39/374 (10%)
Query: 1 MRQFLVIIAMAMLS--NIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ I+ + +LS ++ S AE + L D +TG ++ E PD AS
Sbjct: 1 MKKIFSILLVFLLSISSLGVTTSHAEEKIHIEAAAALLFDADTGKILHEQNPDELLAIAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KL+ Y V +KE K T + IS A E +N ++ L
Sbjct: 61 MSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELYHSI 120
Query: 116 ANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
A + +L + +EK F+ N +K LGL F+NA G+
Sbjct: 121 VIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 180
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA----VG 208
+ +ARDM ILS + T +P+ + + + K + N NW
Sbjct: 181 DPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 240
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF N
Sbjct: 241 AYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFNNFE 300
Query: 269 DRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-----SHFI 321
+K Q +E+ K+ ++ DK
Sbjct: 301 KQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPYKIGTEVDKSLAEDGHLVA 360
Query: 322 DFEKITLLKNKITK 335
+K + + +
Sbjct: 361 PIKKGAKVGSITLE 374
>gi|42784563|ref|NP_981810.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus ATCC
10987]
gi|42740495|gb|AAS44418.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus ATCC
10987]
Length = 423
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 85/374 (22%), Positives = 142/374 (37%), Gaps = 39/374 (10%)
Query: 1 MRQFLVIIAMAMLS--NIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ L I+ + +LS ++ S AE + L D +TG ++ E PD AS
Sbjct: 1 MKKILSILLVFLLSISSLGVTTSHAEEKIHIEAAAALLFDADTGKILHEQNPDELLAIAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KL+ Y V +KE K T + IS A E +N ++ L
Sbjct: 61 MSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELYHSI 120
Query: 116 ANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
A + +L + +EK F+ N +K LGL F+NA G+
Sbjct: 121 VIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 180
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA----VG 208
+ +ARDM ILS + T +P+ + + + K + N NW
Sbjct: 181 DPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 240
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF N
Sbjct: 241 AYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFNNFE 300
Query: 269 DRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-----SHFI 321
+K Q +E+ K+ ++ DK
Sbjct: 301 KQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPYKVGTEADKSLAEDGHLVA 360
Query: 322 DFEKITLLKNKITK 335
+K + + +
Sbjct: 361 PIKKGAKVGSITLE 374
>gi|225017092|ref|ZP_03706284.1| hypothetical protein CLOSTMETH_01017 [Clostridium methylpentosum
DSM 5476]
gi|224950149|gb|EEG31358.1| hypothetical protein CLOSTMETH_01017 [Clostridium methylpentosum
DSM 5476]
Length = 445
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 79/373 (21%), Positives = 141/373 (37%), Gaps = 39/373 (10%)
Query: 1 MRQFLVII--AMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M++ + ++ + ++S P + A L++ TG VI E + P
Sbjct: 1 MKRLIFLLLPCIVLVSLFAPLTAQAAYTPDFEINSEAAYLVNMETGKVIYEKNAQTQYLP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAML-TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
AS TK+MTA + + + + T P + SN+ + +++ + L L+
Sbjct: 61 ASTTKIMTAIIALETIDDIDNTMVTAPAYVFDQLYGLSASNADLRVDEQLSMKDLLYALM 120
Query: 113 VKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++SA + A IA+ + + +KFV MN ++ +G + THF+NAHG+ + TTA DM
Sbjct: 121 LRSACEGASIIADYIGEGDIQKFVDMMNAKAEEIGCTNTHFVNAHGLDEPDQLTTAYDMY 180
Query: 172 ILSWRIKTDFPQYMHYFQI------------KGLEIKGKKYPNTNWAVGTF-------LG 212
+++ T+ + +I K E + + N + T
Sbjct: 181 LITNYALTNEQIGARFREIATTYSYTMAATNKHPEPRVISHTNKMMSSNTDLNGGYSRSY 240
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR--NKVSASLLSMGFYNKTDR 270
G+KTG T FN+V A Q + + V LGA +N+ A+L F +
Sbjct: 241 VQGIKTG-TSNEYFNLVTMAKQDGYTYLLVTLGAHGQNSFVTYSDHAALYDWAFKTFESK 299
Query: 271 KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK--------DKESHFID 322
K V TTQ + + + + E+
Sbjct: 300 VLARPGSKTIPNDVKVEFAKGTDSLVLTTQDAVSELLPKDVKEEAVMWDTSSLPETVQAP 359
Query: 323 FEKITLLKNKITK 335
K + K
Sbjct: 360 IRKGDKIGEVQLK 372
>gi|322517678|ref|ZP_08070541.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
vestibularis ATCC 49124]
gi|322123666|gb|EFX95258.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
vestibularis ATCC 49124]
Length = 422
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 77/366 (21%), Positives = 142/366 (38%), Gaps = 35/366 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ II + ++ ++A+ + ++T TG V+ E P A
Sbjct: 8 MKKLQHIIMITLILIGLTTPALAQDQTDDFNVAAKHAIAIETTTGKVLYEKDATTPNGVA 67
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLL 111
S+TK++TAY+V+ + + K T + IS ++ T+ L
Sbjct: 68 SMTKILTAYMVYKAVDQGKINWDTEVNISDYPFNLTVDSEVSNIPLDSRKYTVKQLLDAT 127
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
++ SAN A+A+AE + TE FV M K G++ NA G+
Sbjct: 128 LISSANSAAIALAEKISGTESAFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGS 187
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA----VGTFLG 212
+ +A D+AI++ + D+PQ + + + + K N+ G
Sbjct: 188 KPDDENTMSALDVAIIADHLIKDYPQVLEITKQTETDFERDNKLTTHNYMLEGQDNYREG 247
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNTRNKVSASLLSMGFYNKT 268
DG+KTG T +G + VA + + SLI V++ G D R + LL N
Sbjct: 248 VDGLKTGTTELAGASFVAHSNEHGMSLITVVMNADNGGEDEAARFTATNELLDYVTQNWE 307
Query: 269 DRKKINYI--IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK-ESHFIDFEK 325
+ +K + + IS ++ + + N++ K K ++ +K
Sbjct: 308 IKTLNTKGQIVKKNDIKVADGDSQTISAKLESDLIVVQKINSKNDAVKIKAKTITAPIKK 367
Query: 326 ITLLKN 331
+
Sbjct: 368 GDTIGT 373
>gi|312868004|ref|ZP_07728208.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis F0405]
gi|311096408|gb|EFQ54648.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis F0405]
Length = 413
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 68/364 (18%), Positives = 139/364 (38%), Gaps = 32/364 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++F + + +L P L+ ++ +TG ++ E + + L
Sbjct: 1 MKKFFLSFLTFILLLCSLPYQVVLADELELPAQSAIAVEADTGKILYEKDSEKKRDVGGL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIV 113
+ L+T Y++F + EKK L PI +S+ A + + + + + T++ L L+V
Sbjct: 61 STLLTTYLIFEAIHEKKLSLKDPIKLSEKALALNYIEGAGTLPMEANQYTVEQLLTALLV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-----------G 162
+++ A+A+AE + +EK FV+ M G+ + H +NA G+
Sbjct: 121 GNSSTAALALAEKVGGSEKSFVEKMKQKLTEWGIQSPHLINATGLNTQTISGDPDGKEDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+A+++ + DFP+ Y + N N + G DG++
Sbjct: 181 NQLSAYDIAVIAKHLLQDFPEVTKYTSKPTALFSNTQIENPNLMLEGMPNYRSGVDGLRV 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
+ G AS Q +I V+LG D R ++SL++ +
Sbjct: 241 SNSNKGGITFAASTTQNGIHMITVVLGVDAVDGDPYARFVATSSLMNYVVRTFVPSIVVK 300
Query: 275 YIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ ++ +K+ +++ ++ES + T
Sbjct: 301 EGDPYGKSKATIMDGKSETVLAVAKKDFYIVEKQGNQAEPKIQFKSNQESFRAPVKSGTS 360
Query: 329 LKNK 332
L
Sbjct: 361 LGKL 364
>gi|229029247|ref|ZP_04185338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
gi|228732060|gb|EEL82951.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
Length = 366
Score = 147 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 77/328 (23%), Positives = 127/328 (38%), Gaps = 13/328 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++I A + I + + L++ +G V+ AS+TK+MTA +
Sbjct: 1 MLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHESQKIASITKIMTALL 60
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
K K +++S A S K G + L++ + L+++S ND A IA
Sbjct: 61 AAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIA 115
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQ 183
E++ + + FV MN +K +G+ THF N HG+ HY++A DMA+L+ +
Sbjct: 116 ENVGGSIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ET 174
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ F K + YP N + A G KTGFT +G +V +A + LI
Sbjct: 175 FKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLI 234
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
V L A +L GF + +
Sbjct: 235 VVTLSASSD---WDDHMNLFDKGFERFKQTNVVGQGALAEITEKKYANHVYTKNSFAVPL 291
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKITL 328
E + +K DK + D K+
Sbjct: 292 TEQERKDVVLKVELDKSAKLKDGVKVGK 319
>gi|300854319|ref|YP_003779303.1| D-alanyl-D-alanine carboxypeptidase-like protein [Clostridium
ljungdahlii DSM 13528]
gi|300434434|gb|ADK14201.1| D-alanyl-D-alanine carboxypeptidase related protein [Clostridium
ljungdahlii DSM 13528]
Length = 367
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 74/341 (21%), Positives = 138/341 (40%), Gaps = 21/341 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA---------ETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
+ I+ +L NI + A +D+ + ++ +
Sbjct: 5 KSLSYIVITFILFNICSYTVFADDKNSSFREPNINARCAIAMDSKSKVIMYQKNASELVP 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
AS TK+MT V + K L + IS ++ S +KKG ++TL L L+
Sbjct: 65 MASTTKIMTVLVAIKYGK-----LDEKVQISSRSAGIRGSVVGYKKGESITLKELLYGLM 119
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
++S ND A+AI+E + + ++FV+ MN + +G+ THF HG+ + HYTTA D+A+
Sbjct: 120 LRSGNDAAIAISEGVSGSVEEFVKLMNEYASEIGVINTHFKTPHGLDKEEHYTTAYDLAV 179
Query: 173 LSWRIKTDFPQYMHYFQIK---GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
L+ K + + Y N N + A+G+KTG+T +G +V
Sbjct: 180 LTSIAKNNTLFNEIVSSKDVDGPQNGFTRSYHNINKILWKIPDANGVKTGYTGKAGKCLV 239
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
S +I V+L R + + + N K + K + ++
Sbjct: 240 TSTKVQGNDVIIVVLNCP---RRWEETEKIYKYVDKNFKFNKLFSKGDKALELRVNKKDL 296
Query: 290 PN-ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
++V K + ++ + + + ++I +L
Sbjct: 297 KLECEDDVIVPIKNGFKCSVKIIKPQRIKYSVNKGDRIGML 337
>gi|291532593|emb|CBL05706.1| D-alanyl-D-alanine carboxypeptidase [Megamonas hypermegale ART12/1]
Length = 424
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 84/334 (25%), Positives = 145/334 (43%), Gaps = 15/334 (4%)
Query: 2 RQFLVIIAMAMLSN--IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++ +I ++ +L L+D + V+ D +PAS TK+
Sbjct: 27 KKIAIIFSLCLLICNIALAKTLPNPDTSAVSACLIDADDNGVLYGKDEDKIMHPASTTKI 86
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTA + K L P+ I+ A PS+ + G +TL AL +++ S ND
Sbjct: 87 MTAILALESGK-----LDEPLVITPEAVNTEPSSLGLRLGDKITLREALTGMMIVSGNDA 141
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
AVA+A+++ + F + MN+ +K LG THF+N HG+ GHY+TA DMAI++
Sbjct: 142 AVAVAQTVAGSVPAFAKMMNDKAKELGAVNTHFLNPHGLTAQGHYSTAHDMAIIASYAMK 201
Query: 180 DFP----QYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQ 234
+ +K ++ + TN + + F GA+G+KTGFT A+G +VASA +
Sbjct: 202 KPEFREIVSKKAYNMKYMDGHTEYVTTTNRFLKSGFEGANGIKTGFTNAAGDCLVASATR 261
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
G ++LIAV + R + + L GF + + + N++
Sbjct: 262 GQKTLIAVFYN---DDYRWDDAPTWLEFGFSFYDPSELQDKTVVSKQNVIKLNKITEQRI 318
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + + K K + + +
Sbjct: 319 KHSRETNKNLAALDAAIVNKAKSLNNKTIDVVDT 352
>gi|258614356|ref|ZP_05712126.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium DO]
gi|261209455|ref|ZP_05923818.1| predicted protein [Enterococcus faecium TC 6]
gi|289567521|ref|ZP_06447868.1| predicted protein [Enterococcus faecium D344SRF]
gi|294616358|ref|ZP_06696151.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1636]
gi|260076583|gb|EEW64347.1| predicted protein [Enterococcus faecium TC 6]
gi|289160683|gb|EFD08636.1| predicted protein [Enterococcus faecium D344SRF]
gi|291590872|gb|EFF22588.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1636]
Length = 435
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 63/350 (18%), Positives = 121/350 (34%), Gaps = 32/350 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L + +D +G ++ + + AS+TK++ Y+V +
Sbjct: 20 ASFLPAVAVQAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ G+ +NA G+ + +A+D+A
Sbjct: 140 KISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R + L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANAS 319
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + V + M K + +D +++T
Sbjct: 320 IPSLKTIDVKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITPTLDKKQVT 369
>gi|225867886|ref|YP_002743834.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp.
zooepidemicus]
gi|225701162|emb|CAW98055.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
subsp. zooepidemicus]
Length = 412
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 67/366 (18%), Positives = 143/366 (39%), Gaps = 32/366 (8%)
Query: 1 MRQFLVIIAMAMLSNIF-PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ L+ + + +S + P + + ++ ++G ++ E D + ASL+K+
Sbjct: 1 MKKVLIALTILAISCLAYPAQADHYDISAKHAIAVELDSGKILYEKDADKTVSVASLSKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+TAY+V+ ++ K + +TIS ++ T+ LK LIV +A
Sbjct: 61 LTAYLVYKEVQAGKLKWDSSVTISNYPYELTTNYTISNVPLDARKYTVKELLKALIVTNA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--------------G 162
N A+A+AE + TE KFV M K G++ +NA G+ H
Sbjct: 121 NSPAIALAEKIGGTEAKFVDKMIAQLKEWGITDAKVVNASGLPNHILGEHIYPGSSLDDD 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+A+++ + +FP+ + E ++ + N+ + G DG+
Sbjct: 181 NQFSAADLALVTSHLLKEFPEVLKLSSQVQAEFNHQQIFSYNYMLKGMPNYRDGVDGLFV 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKIN 274
++ G + +A++++ + +I V+L A + + LL + +
Sbjct: 241 SYSEKGGSSFLATSVENNMRIITVVLNADHAQDNDTAVFTATNQLLQYVLTHFKKVVVLE 300
Query: 275 YIIKDFYQQNLSNEVPNI------SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
D + + P +++ + T + + K +K
Sbjct: 301 KGKPDQLKALPVLDSPQKKIQLVPKKKLTMIKALDDKSKTTFQISDTKNPLVAPIQKGQT 360
Query: 329 LKNKIT 334
L
Sbjct: 361 LAKATL 366
>gi|311068836|ref|YP_003973759.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
gi|310869353|gb|ADP32828.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
Length = 383
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 61/318 (19%), Positives = 115/318 (36%), Gaps = 11/318 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+++ A + A ++D +G V+ AS+TK+MTA
Sbjct: 10 IILVTAFLLTFIKEHKAYAAINVSAKSAIVIDGASGRVLFAKDEHEKRRIASITKIMTAV 69
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ K + +T+S NA S K+G + L + + L+++S ND A AI
Sbjct: 70 LAIESGK-----MEETVTVSANAVRTEGSAIYLKEGQKVKLKDLVYGLMLRSGNDAAAAI 124
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + + FV MN ++ +G+ T F N HG+ H ++ + + +
Sbjct: 125 AEHVGGSLGGFVYMMNQKAEQIGMENTRFQNPHGLDDHENHYSTAYDMAILTKYAMKLKD 184
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
Y K + + + N G + + G KTG+T + +V++A + LI
Sbjct: 185 YQTISGTKVYKAETMESVWKNKNKLLTGLYQYSTGGKTGYTKLAKRTLVSTASKDGTDLI 244
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AV + + ++ F + ++ I +V
Sbjct: 245 AVTINDPND---WDDHMNMFEYVFNHYKTYIVAKKGDIPKLKETFYGSRAFIKRDVTYLL 301
Query: 301 KEIINYNTQMKEAKDKES 318
E ++ K
Sbjct: 302 NEAEKDEVKINTTLLKPK 319
>gi|226952491|ref|ZP_03822955.1| D-ala-D-ala-carboxypeptidase, penicillin-binding protein
[Acinetobacter sp. ATCC 27244]
gi|226836762|gb|EEH69145.1| D-ala-D-ala-carboxypeptidase, penicillin-binding protein
[Acinetobacter sp. ATCC 27244]
Length = 445
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 86/334 (25%), Positives = 154/334 (46%), Gaps = 11/334 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L++ ET + ++++D +G +IAE+ PASLTK+M AYV ++
Sbjct: 25 LAHATLLNISPETVEAQAWSIVDAQSGQIIAEHNSHVQRAPASLTKMMVAYVALKEIEAG 84
Query: 73 KAMLTTPITIS--KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
K T + N + S K+G +++D L LIV SAND A+ +AE + +
Sbjct: 85 KLRKEDVTTATSVVNTVMWDESQMYLKEGEQISVDQLLAGLIVMSANDAALTLAEKISGS 144
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+F+ MN ++ LG+ THF N G+ HY+TA D+ +L+ I T P+Y++Y ++
Sbjct: 145 VPQFIIRMNQEAQALGMKDTHFSNPAGITMPDHYSTAADLGLLAQAIVTKTPEYLYYSKM 204
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVI 243
+ + TN A+ ADG+KTGFT A+G+N+ +A + + LI ++
Sbjct: 205 PSFSYNQRFHRATNLALKIDPTADGLKTGFTKAAGYNLALTAERPTLNPHIDKRRLIVIV 264
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
LG + TR +V+ L+++ + D + I + + + E
Sbjct: 265 LGTPNAITRAEVANKLMNLAYAYTRDEEVIPKHQLIAELPVIRSTLKIFKVETQQPTIVT 324
Query: 304 IN-YNTQMKEAKDKESHFID-FEKITLLKNKITK 335
+ Y+ ++ + + KI +
Sbjct: 325 TSLYDQATPIDLNQFDPLTQRLQVVDQNGVKIIE 358
>gi|160935578|ref|ZP_02082953.1| hypothetical protein CLOBOL_00468 [Clostridium bolteae ATCC
BAA-613]
gi|158441322|gb|EDP19032.1| hypothetical protein CLOBOL_00468 [Clostridium bolteae ATCC
BAA-613]
Length = 418
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 67/395 (16%), Positives = 135/395 (34%), Gaps = 64/395 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------------------NKLPYYTLLDTNTGHVI 42
M+Q++ +I + + + A++ L+D +TG ++
Sbjct: 1 MKQWIFLITLTISLVCTQMNAAADSWTSVPATKEVREDGDFLKLYAQSAVLMDGDTGRIL 60
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
D AS TK+MT + + + + S NA+ P + ++G
Sbjct: 61 YGKGQDIIRPMASTTKIMTCILALENGRGE-----DAVKASSNAASQPKVHLGVREGEEY 115
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--- 159
L++ L L+++S ND AV IAE + + + F MN + LG T+F+ +G+
Sbjct: 116 RLEDLLYALMLESYNDAAVMIAEHIGGSVEGFAAMMNEKAAGLGCGDTYFITPNGLDGVK 175
Query: 160 ------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---------YPNTN 204
+H H TTA D+A + T+ P + +I + N N
Sbjct: 176 TDEQGKEHIHSTTASDLARIMRYCVTESPAKDEFLKITQTQNHYFTDMAGKRSFNCYNHN 235
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLS 261
+ G KTGFT +G++ V + ++ + +LG + + + L +
Sbjct: 236 AFLTMMEGVLSGKTGFTGGAGYSYVGAMENQGRTYVIALLGCGWPPHKTYKWSDARKLYT 295
Query: 262 MGFYNKTDRKKINYIIKDFY-------QQNLSNEVPNISEE---------VCTTQKEIIN 305
G + + + + + + E
Sbjct: 296 YGLEHFKMKDVFQEETFARVPVSGGLCWKEGEGAIDQVELSMMLNPDDMHLTLLMGEGEE 355
Query: 306 YNTQMKEAKDKESHFIDFEKITL----LKNKITKK 336
K + + +++ L + K+
Sbjct: 356 ARVVKKVPSILMAPVREGQQVGTVDYYLGEVLVKR 390
>gi|322390982|ref|ZP_08064488.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis ATCC 903]
gi|321142357|gb|EFX37829.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis ATCC 903]
Length = 413
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 69/364 (18%), Positives = 140/364 (38%), Gaps = 32/364 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFP---FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++F + + +L P L+ ++ +TG ++ E + + L
Sbjct: 1 MKKFFLSFLTFILLLCSLPYQVVLADELDLPAQSAIAVEADTGKILYEKDSEKKRDVGGL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIV 113
+ L+T Y++F + EKK L PI +S+ A ++ + + + + T+D L L+V
Sbjct: 61 STLLTTYLIFEAIHEKKLSLKDPIKLSEKALALNDIEGAGTLPMEANQYTVDQLLTALLV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-----------G 162
+++ A+A+AE + +EK FV+ M G+ + H +NA G+
Sbjct: 121 GNSSTAALALAEKVGGSEKSFVEKMKQKLSEWGIQSPHLINATGLNTQTINGDPDGKEDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+A+++ + DFP+ Y + N N + G DG++
Sbjct: 181 NQLSAYDIAVIAKHLLQDFPEVTKYTSKPTALFSNTQIENPNLMLEGMPNYRSGVDGLRV 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
+ G AS Q +I V+LG D R ++SL++ +
Sbjct: 241 SNSTKGGITFAASTTQNGIHMITVVLGVEAVDGDPYARFVATSSLMNYVVRTFVSSIVVK 300
Query: 275 YIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ ++ +K+ +++ ++ES + T
Sbjct: 301 EGDPYGKSKATIMDGKSETVLAVAKKDFYIVEKQGSQAEPKIQFKSNQESFRAPVKSGTS 360
Query: 329 LKNK 332
L
Sbjct: 361 LGKL 364
>gi|161507933|ref|YP_001577897.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus DPC
4571]
gi|160348922|gb|ABX27596.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus DPC
4571]
Length = 431
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 71/373 (19%), Positives = 140/373 (37%), Gaps = 46/373 (12%)
Query: 4 FLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
+ +I++ F A+ + +D+N+G V+ D A
Sbjct: 14 LVALISLVSCGATFSAPVKADGANYQTDQVKLNVKSAIAIDSNSGQVLYAKNADKTLPIA 73
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPIT----ISKNASEYPPSNSTFKKGSTMTLDNALKL 110
S+TKLMT Y+ + +K +K + I K A+ SN K G + T+ +
Sbjct: 74 SMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKVANNAEYSNVPLKMGHSYTIKQLYQA 133
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------- 162
+++SAN A+ + +++ ++K F+ M + K G+ A G+
Sbjct: 134 TLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKWGIKDAKIYTACGLPNGNVGKDAYPG 193
Query: 163 ------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTNWA------ 206
+ +A+DMAI+ + DFP+ + ++ L+ K N NW
Sbjct: 194 VNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLAHLDFKDQGHTTKMANFNWMLKGLSQ 253
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSM 262
DG+KTG T A+G + + LI V++GA R + L++
Sbjct: 254 YDQTYPVDGLKTGTTDAAGACFIGTVNHAGARLITVVMGARHKDGTDPARFMQTKKLMNY 313
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN----TQMKEAKDKES 318
F N + +N+ + + +++ ++ + +K++
Sbjct: 314 VFTKYRPVT-FNAGSQMAGVKNIKVTDGDNATTNLGLKEKTTIWDPADGKTLVAKLNKQT 372
Query: 319 HFIDFEKITLLKN 331
K ++ N
Sbjct: 373 IEAPITKGQVVGN 385
>gi|254975737|ref|ZP_05272209.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-66c26]
gi|255093124|ref|ZP_05322602.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CIP
107932]
gi|255314866|ref|ZP_05356449.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-76w55]
gi|255517540|ref|ZP_05385216.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-97b34]
gi|255650651|ref|ZP_05397553.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-37x79]
gi|306520578|ref|ZP_07406925.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-32g58]
Length = 394
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 80/358 (22%), Positives = 153/358 (42%), Gaps = 30/358 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++ + + + + + ++ L+D TG V+ PD ASL+K
Sbjct: 5 LKKIISLAMILVFIIPNYSYADGKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSK 64
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND
Sbjct: 65 MMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGND 124
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTTAR 168
A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +TA+
Sbjct: 125 AAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAK 184
Query: 169 DMAILSWRIKTDFPQYM---HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
D+AIL + + + + + + + NTN + DG+KTG+T +G
Sbjct: 185 DIAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAG 244
Query: 226 FNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
+ + S + + +I V+LG +N R S +LL G N +K I+
Sbjct: 245 YCLSFSMVVNKNEKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKDSF 304
Query: 276 -IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
K +E+ T K+ + +++K + +K +
Sbjct: 305 IGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVKIK----NIEYPVKKGDTMGVI 358
>gi|195941738|ref|ZP_03087120.1| serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Borrelia
burgdorferi 80a]
gi|218249458|ref|YP_002375112.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi ZS7]
gi|226321911|ref|ZP_03797437.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
Bol26]
gi|218164646|gb|ACK74707.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi ZS7]
gi|226233100|gb|EEH31853.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
Bol26]
gi|312148150|gb|ADQ30809.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi JD1]
gi|312149468|gb|ADQ29539.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi N40]
Length = 396
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 84/351 (23%), Positives = 136/351 (38%), Gaps = 28/351 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M L +I N+F + L+D +T ++ P+ + PASLT
Sbjct: 1 MLLTLFLIFFPFCYNLFAVNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLVFPPASLT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN----STFKKGSTMTLDNALKLLIV 113
K++T Y +++ L + + IS +AS Y +KG + + LK L V
Sbjct: 61 KIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLSV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND ++AIAE + FV MN NLGL HF+ G + TA DMA
Sbjct: 121 SSGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSG-YSSENKITALDMAFF 179
Query: 174 SWRIKTDFPQYMHYFQIKGL--------------EIKGKKYPNTNWAVGTFLGADGMKTG 219
F ++ +K + K N N + + +DG+KTG
Sbjct: 180 VKSYIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKTG 239
Query: 220 FTCASGFNIVASAIQGDQSLIAVILG------ALDRNTRNKVSASLLSMGFYNKTDRKKI 273
+ SG N+VA+A +G++ LIAV+LG R+ ++ +L GF + I
Sbjct: 240 YIKESGLNLVATAKKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGFNKYSKFPLI 299
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
+ + Y + E + + DK + +
Sbjct: 300 VKLKEKVYNGTVDTVALFSKEPFYYILTKDEFDKINISYTVDKLVAPLSGD 350
>gi|166031716|ref|ZP_02234545.1| hypothetical protein DORFOR_01416 [Dorea formicigenerans ATCC
27755]
gi|166028169|gb|EDR46926.1| hypothetical protein DORFOR_01416 [Dorea formicigenerans ATCC
27755]
Length = 430
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 70/344 (20%), Positives = 132/344 (38%), Gaps = 35/344 (10%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ L+D ++G V+ + AS TK+MT + + + +T
Sbjct: 48 EPQNLYAQSAVLMDADSGRVLFGKEEEAIRPMASTTKIMTCIIALEHMTD-----NEIVT 102
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
S A+ P + ++G L + L L+++S ND AV +AE + + + FV+ MN
Sbjct: 103 ASAYAASQPKVHLGVREGQQFYLRDILFSLMLESHNDSAVMVAEEIAGSVEAFVKMMNEK 162
Query: 142 SKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQ---YMHYFQIKGLE 194
++ LGL+ THF+ +G+ H TTA ++A + D P+ ++ K
Sbjct: 163 AEELGLTKTHFVTPNGLDGEDEGGVHATTAMELAKIMKYCIMDSPEKEMFLDITGTKEYH 222
Query: 195 IKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ N N + GA KTGFT +G+ V + + +++ I +L
Sbjct: 223 FRDLKGTSSYTCTNHNAFLTMMDGAISGKTGFTADAGYCYVGALRRDERTFIVALLACGW 282
Query: 249 RNT---RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE---------- 295
N + + L+ G N R + K S NI ++
Sbjct: 283 PNHKGYKWSDTKKLMEYGLANYEYRNVWQELPKQEIVVKDSGNDQNIYQKNSVAEVEIQQ 342
Query: 296 ----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + N ++ K + +K+ ++ + K
Sbjct: 343 KPEVLKVLLRTDENVEISVQMEKALSAPVEKGQKVGEVRYILDK 386
>gi|257883085|ref|ZP_05662738.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
1,231,502]
gi|257818743|gb|EEV46071.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
1,231,502]
Length = 435
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 63/350 (18%), Positives = 121/350 (34%), Gaps = 32/350 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L + +D +G ++ + + AS+TK++ Y+V +
Sbjct: 20 ASFLPAVAVQAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ G+ +NA G+ + +A+D+A
Sbjct: 140 KISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R + L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANAS 319
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + V + M K + +D +++T
Sbjct: 320 IPSLKTIDVKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITPTLDKKQVT 369
>gi|228991455|ref|ZP_04151407.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
12442]
gi|228768257|gb|EEM16868.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
12442]
Length = 329
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 69/274 (25%), Positives = 129/274 (47%), Gaps = 11/274 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M L + A+L F F + K L+D + ++ + D P++ ASL+K+M
Sbjct: 1 MLLILSFLITAILVFYFYFYVNGPSIKAKSAILIDATSEEIVYKKNEDTPFSSASLSKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+V +++ K + IS ++ + +N +T+ + +++ S N A
Sbjct: 61 TEYIVLEQIQKGKIKWDDRVKISNSSIQMEGNNIDITFEDQITIRDLFHAMVLASDNSAA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQHGHYT--TARDMAILSWRI 177
V +AE + K+E+ F MN + LGLS T+F NA GV+ + TA D + L+ +
Sbjct: 121 VFLAEHISKSEQDFTNLMNEKATQLGLSNKTYFANATGVINKQKESKITALDASKLAQHL 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNIV 229
TD+P + Q+ + K N + G DG++T F+ +G++
Sbjct: 181 ITDYPMILEITQLTSYQFTFKDIHVFNTNKMLYSLDSKIKFKGVDGLQTSFSNPAGYSFA 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
++A QG++ I++++ A N+ + L + G
Sbjct: 241 STAKQGNKRFISIVMEANGENSAFIETKKLFTYG 274
>gi|317470930|ref|ZP_07930309.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
gi|316901581|gb|EFV23516.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
Length = 374
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 69/300 (23%), Positives = 118/300 (39%), Gaps = 33/300 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA---------------ETNKLPYYTLLDTNTGHVIAENY 46
++ LV++ A+L + A + L+D TG ++
Sbjct: 6 KRLLVMLTAAVLVTAGTVPAKAAERGLATKEDTNADKPSINGVCGILMDAKTGKILYAKN 65
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMT 103
D PAS+TK++T V L + + S++A + K G +
Sbjct: 66 IDKKSYPASITKILTTLVAIENND----DLYSTVKFSRHAVNSIEPGSTHIGIKAGEEIP 121
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
L + L ++++SAN+ +AE + +KF MN +K +G +HFMN +G+ H
Sbjct: 122 LMDVLYGIMLESANEACNGVAEHTSGSIEKFADLMNKKAKEIGCKGSHFMNPNGLHNDKH 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------YPNTNWA----VGTFLGA 213
Y TARDMA+++ + K N + + + G
Sbjct: 182 YVTARDMALITKAALQNPMFRKIACSSHYFMSGTNKEKKGRELWNHHKMVKQTMFLYKGV 241
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
+G KTG+T +G +V A +G+ LI+VIL + + L GF N
Sbjct: 242 EGGKTGYTTRAGGTLVTFAKRGETELISVILRGNGYEL-YRDTIKLFDYGFKNYKSVAPF 300
>gi|157692820|ref|YP_001487282.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
SAFR-032]
gi|157681578|gb|ABV62722.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
SAFR-032]
Length = 385
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 70/327 (21%), Positives = 134/327 (40%), Gaps = 16/327 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ ++ + L+D +G V+ AS+TK+MTA + K K
Sbjct: 22 FSSHAKADVSLSVSARSAILIDGQSGRVLFGKDEHEKRRIASITKIMTAVLAIESGKMK- 80
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ +SK A + S+ K+G ++L++ L+++S ND AVAIAE + + +
Sbjct: 81 ----DTVKVSKRAIQAEGSSIYLKEGQKVSLEDLTYGLMLRSGNDAAVAIAEHVGGSLEG 136
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F+ MN + LG+ T+F N HG+ H ++ ++ + R + QY
Sbjct: 137 FIFMMNQKASELGMENTNFQNPHGLDDHKNHYSSAYDMAILTRYAMEHKQYQKIAGTTFY 196
Query: 194 EIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ K + N G + + G KTG+T + +V++A +G+ +LIAV + A D
Sbjct: 197 KAKTMEGYWKNKNKLLTGLYQYSTGGKTGYTKLAKRTLVSTAAKGNAALIAVTINAPDD- 255
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV----CTTQKEIINY 306
K S+ F + + + I +V +K+++
Sbjct: 256 --WKDHISMFEYAFDHYKTYVLAEKGRLASLKGTFYEKKAFIKRDVDYFLNEDEKKLVEI 313
Query: 307 NTQMKEAKDKESHFIDFEKITLLKNKI 333
T+M + K + + ++
Sbjct: 314 ETEMLTPQKKWAKNAEAIP-DVVGKMT 339
>gi|260683741|ref|YP_003215026.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
gi|260687401|ref|YP_003218535.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
gi|260209904|emb|CBA63846.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
gi|260213418|emb|CBE05068.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
Length = 397
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 80/358 (22%), Positives = 153/358 (42%), Gaps = 30/358 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++ + + + + + ++ L+D TG V+ PD ASL+K
Sbjct: 8 LKKIISLAMILVFIIPNYSYADGKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND
Sbjct: 68 MMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTTAR 168
A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +TA+
Sbjct: 128 AAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAK 187
Query: 169 DMAILSWRIKTDFPQYM---HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
D+AIL + + + + + + + NTN + DG+KTG+T +G
Sbjct: 188 DIAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAG 247
Query: 226 FNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
+ + S + + +I V+LG +N R S +LL G N +K I+
Sbjct: 248 YCLSFSMVVNKNEKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKDSF 307
Query: 276 -IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
K +E+ T K+ + +++K + +K +
Sbjct: 308 IGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVKIK----NIEYPVKKGDTMGVI 361
>gi|229109023|ref|ZP_04238624.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
gi|229126883|ref|ZP_04255895.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
gi|228656823|gb|EEL12649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
gi|228674492|gb|EEL29735.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
Length = 363
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 79/308 (25%), Positives = 120/308 (38%), Gaps = 13/308 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +G V+ P AS+TK+MTA + K K +++S
Sbjct: 18 NVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAESGKMK-----EMVSVSN 72
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K G + L++ + L+++S ND A IAES+ + FV MN +K
Sbjct: 73 EAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKE 132
Query: 145 LGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ THF N HG+ HY++A DMA+L+ + + F K + YP
Sbjct: 133 IGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWK 191
Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + A G KTGFT +G +V +A +G LI V L A +L
Sbjct: 192 NKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVTLSASSD---WDDHMNLF 248
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
GF K + + E N +K DK +
Sbjct: 249 DKGFDRFKQTKVLGQGAIAEINEKKYANHVYTKNSFSVPLTEEEKKNVVLKVELDKSTKL 308
Query: 321 IDFEKITL 328
D K+
Sbjct: 309 TDGVKVGK 316
>gi|325123015|gb|ADY82538.1| putative D-ala-D-ala-carboxypeptidase, penicillin-binding protein
[Acinetobacter calcoaceticus PHEA-2]
Length = 440
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 84/302 (27%), Positives = 143/302 (47%), Gaps = 9/302 (2%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
I L+N E+ + +T++DT +G +IAE+ PASLTK+M AY+
Sbjct: 14 IFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPASLTKMMVAYIALK 73
Query: 68 FLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+K K IT + + ++ S K G +++D L LIV SAND AV +AE
Sbjct: 74 EIKAGKLKKEEIITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSANDAAVTLAE 133
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+ +FVQ MN ++ LG+ THF N G+ H+TTA D+++LS + P+Y+
Sbjct: 134 KISGDVPRFVQRMNQEAQALGMKDTHFSNPAGITMPDHFTTAHDLSLLSQALIKQTPEYL 193
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-------DQS 238
HY ++ + + TN A+ DG+KTG+T A+G+N+ +A + +
Sbjct: 194 HYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPSFSSDLTQRR 253
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
L+ ++LG R +++ L+++ + D I + + + E
Sbjct: 254 LLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVIIPEQKLIAELPVVKSTLKMFKVETKQ 313
Query: 299 TQ 300
Sbjct: 314 PT 315
>gi|294623044|ref|ZP_06701933.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium U0317]
gi|291597600|gb|EFF28762.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium U0317]
Length = 435
Score = 146 bits (368), Expect = 4e-33, Method: Composition-based stats.
Identities = 63/350 (18%), Positives = 121/350 (34%), Gaps = 32/350 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L + +D +G ++ + + AS+TK++ Y+V +
Sbjct: 20 ASFLPAVAVQAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ G+ +NA G+ + +A+D+A
Sbjct: 140 KISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTVENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R + L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANAS 319
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + V + M K + +D +++T
Sbjct: 320 IPSLKTIDVKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITPTLDKKQVT 369
>gi|325292852|ref|YP_004278716.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
gi|325060705|gb|ADY64396.1| D-alanyl-D-alanine carboxypeptidase [Agrobacterium sp. H13-3]
Length = 390
Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats.
Identities = 66/326 (20%), Positives = 121/326 (37%), Gaps = 10/326 (3%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ K ++D TG V+ + + PASL KLMT V+ L + +
Sbjct: 26 AQAQTQTAPFIAKAEQAYMIDAETGTVLLSQNENQSFPPASLAKLMTVEVILDALAKGQV 85
Query: 75 MLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
T +S+ A S S++++++ L +IV++AND + +AE +
Sbjct: 86 TPETAYPVSEYAWRTGGAPSRTSTMFAALKSSVSVNDLLTGIIVQNANDGCIIVAEGMAG 145
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
++ F + M + LG++ + F N+ G+ G+ TTA+DM +L+ ++ +P F
Sbjct: 146 SDSAFAKRMTVRAGELGMNRSVFANSTGLPDPGNQTTAKDMVLLAQHLRDTYPDRYGLFT 205
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
E N N +G G DG+ GF SGF V SA + + + + D
Sbjct: 206 KPDFEWNRIFQRNKNSLLG--NGIDGLGLGFAEGSGFAAVVSAEREGRRVYLALGSIADD 263
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIK---DFYQQNLSNEVPNISEEVCTTQKEIINY 306
TR + ++ G R + + E + + N
Sbjct: 264 KTRQDEARRVVDWGLTAFEKRHLFAKDEAVGSVSVYGGDVSHIDLSPREDVSVLVPVNNP 323
Query: 307 NTQMKEAKDKESHFIDFEKITLLKNK 332
+ + +
Sbjct: 324 ERISGRIVYRWPLNAPLDTGANVGTL 349
>gi|255656129|ref|ZP_05401538.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-23m63]
Length = 394
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 80/356 (22%), Positives = 154/356 (43%), Gaps = 30/356 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++ + + + + + ++ L+D TG V+ PD ASL+K
Sbjct: 5 LKKIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSK 64
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND
Sbjct: 65 MMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGND 124
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTTAR 168
A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +TA+
Sbjct: 125 AAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAK 184
Query: 169 DMAILSWRIKTDFPQYM---HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
D+AIL + ++ + + + + + NTN + DG+KTG+T +G
Sbjct: 185 DIAILGKYMFDNYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAG 244
Query: 226 FNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
+ + S + + +I V+LG +N R S +LL G N +K I+
Sbjct: 245 YCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKDSF 304
Query: 276 -IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
K +E+ T K+ + +++K + +K +
Sbjct: 305 IGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVKIK----NIEYPVKKGDTMG 356
>gi|223889041|ref|ZP_03623632.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 64b]
gi|223885857|gb|EEF56956.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 64b]
Length = 388
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 84/351 (23%), Positives = 136/351 (38%), Gaps = 28/351 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M L +I N+F + L+D +T ++ P+ + PASLT
Sbjct: 1 MLLTLFLIFFPFCYNLFAVNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLVFPPASLT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN----STFKKGSTMTLDNALKLLIV 113
K++T Y +++ L + + IS +AS Y +KG + + LK L V
Sbjct: 61 KIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLSV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND ++AIAE + FV MN NLGL HF+ G + TA DMA
Sbjct: 121 SSGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSG-YSSENKITALDMAFF 179
Query: 174 SWRIKTDFPQYMHYFQIKGL--------------EIKGKKYPNTNWAVGTFLGADGMKTG 219
F ++ +K + K N N + + +DG+KTG
Sbjct: 180 VKSYIEKFKFMLNIHSLKYFIYPKSRNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKTG 239
Query: 220 FTCASGFNIVASAIQGDQSLIAVILG------ALDRNTRNKVSASLLSMGFYNKTDRKKI 273
+ SG N+VA+A +G++ LIAV+LG R+ ++ +L GF + I
Sbjct: 240 YIKESGLNLVATAKKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGFNKYSKFPLI 299
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
+ + Y + E + + DK + +
Sbjct: 300 VKLKEKVYNGTVDTVALFSKEPFYYILTKDEFDKINISYTVDKLVAPLSGD 350
>gi|196231311|ref|ZP_03130170.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
Ellin428]
gi|196224647|gb|EDY19158.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
Ellin428]
Length = 295
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 11/254 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
FP LLD TG +I E D AS KL+T+ +V
Sbjct: 48 AFPVADGVPKITAGSAILLDAKTGKIIFEMNADQRRPVASTQKLLTSLIVAE-----TGD 102
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L + + + + P+ K G+ + + L +L+V S ND+A A+A + + F
Sbjct: 103 LDHKVHVEASDTWAEPTMLYIKPGNVYSRYDFLNVLLVHSMNDVARALARDNAGSLENFA 162
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIK 191
MN + LG+ ++F+N +G+ G Y+TARDMA +
Sbjct: 163 ARMNAKASELGMRNSNFVNPNGLPIPGQYSTARDMAQVALAAYRNPIIRGIVCQKSVTWH 222
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + + + TN + + +GMKTG+T A+G +++SA + +IAV+LG D
Sbjct: 223 YNDGRVRVFETTNQVLKRYPLCNGMKTGYTEAAGHCLISSASHNGRDVIAVVLG--DNKN 280
Query: 252 RNKVSASLLSMGFY 265
S LL+ G
Sbjct: 281 IWNDSYKLLAFGLS 294
>gi|294620209|ref|ZP_06699543.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1679]
gi|314940169|ref|ZP_07847347.1| beta-lactamase [Enterococcus faecium TX0133a04]
gi|314942414|ref|ZP_07849257.1| beta-lactamase [Enterococcus faecium TX0133C]
gi|314952310|ref|ZP_07855321.1| beta-lactamase [Enterococcus faecium TX0133A]
gi|314994247|ref|ZP_07859550.1| beta-lactamase [Enterococcus faecium TX0133B]
gi|314997162|ref|ZP_07862148.1| beta-lactamase [Enterococcus faecium TX0133a01]
gi|291593562|gb|EFF25102.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium E1679]
gi|313588736|gb|EFR67581.1| beta-lactamase [Enterococcus faecium TX0133a01]
gi|313591334|gb|EFR70179.1| beta-lactamase [Enterococcus faecium TX0133B]
gi|313595569|gb|EFR74414.1| beta-lactamase [Enterococcus faecium TX0133A]
gi|313598814|gb|EFR77659.1| beta-lactamase [Enterococcus faecium TX0133C]
gi|313640608|gb|EFS05188.1| beta-lactamase [Enterococcus faecium TX0133a04]
Length = 435
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 63/350 (18%), Positives = 121/350 (34%), Gaps = 32/350 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L + +D +G ++ + + AS+TK++ Y+V +
Sbjct: 20 ASFLPAVAVQAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ G+ +NA G+ + +A+D+A
Sbjct: 140 KISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R + L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANAS 319
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + V + M K + +D +++T
Sbjct: 320 IPSLKTIDVKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITPTLDKKQVT 369
>gi|296450439|ref|ZP_06892195.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
difficile NAP08]
gi|296879438|ref|ZP_06903432.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
difficile NAP07]
gi|296260700|gb|EFH07539.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
difficile NAP08]
gi|296429584|gb|EFH15437.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
difficile NAP07]
Length = 397
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 80/356 (22%), Positives = 154/356 (43%), Gaps = 30/356 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++ + + + + + ++ L+D TG V+ PD ASL+K
Sbjct: 8 LKKIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND
Sbjct: 68 MMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTTAR 168
A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +TA+
Sbjct: 128 AAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAK 187
Query: 169 DMAILSWRIKTDFPQYM---HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
D+AIL + ++ + + + + + NTN + DG+KTG+T +G
Sbjct: 188 DIAILGKYMFDNYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAG 247
Query: 226 FNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
+ + S + + +I V+LG +N R S +LL G N +K I+
Sbjct: 248 YCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKDSF 307
Query: 276 -IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
K +E+ T K+ + +++K + +K +
Sbjct: 308 IGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVKIK----NIEYPVKKGDTMG 359
>gi|118471047|ref|YP_886038.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
MC2 155]
gi|118172334|gb|ABK73230.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
MC2 155]
Length = 397
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 65/283 (22%), Positives = 108/283 (38%), Gaps = 11/283 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + E + + D +TG VIA P PAS+ K++TA +
Sbjct: 76 VITAPNTPPVPEDVSAEAWIVADMDTGDVIAARDPHGRHRPASIIKVLTATAALNE---- 131
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + +++ + + G T+++ L L++ S ND A A+A
Sbjct: 132 -LNLNKRVAGTQDDANAEGTRVGVGPGGQYTINDLLHGLLMYSGNDAAHALAM-QLGGWD 189
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----PQYMHYF 188
+Q +N + LG T G+ G T+A D+A+ + + +
Sbjct: 190 PALQKLNTLAAKLGGRDTRAATPSGLDGPGMSTSAYDIALFYRYAWQNPVFADIVHTQSY 249
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GAL 247
Q G + N N + + GA G KTG+T +G V +A + + LIAV+L G
Sbjct: 250 QFPGRDGGSYPIENDNKLLANYPGALGGKTGYTDDAGQTFVGAAERDGRRLIAVLLKGTR 309
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
+ +A LL GF K + D E P
Sbjct: 310 VPIAPWEQAARLLDYGFATPPGTKVGTLVDPDPSLAPKQAEEP 352
>gi|308174109|ref|YP_003920814.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens DSM
7]
gi|307606973|emb|CBI43344.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
[Bacillus amyloliquefaciens DSM 7]
gi|328552762|gb|AEB23254.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
TA208]
gi|328912440|gb|AEB64036.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5*)
[Bacillus amyloliquefaciens LL3]
Length = 383
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 67/318 (21%), Positives = 119/318 (37%), Gaps = 11/318 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
FL+ + L+D +G V+ H AS+TK+MTA
Sbjct: 10 FLLTFVILFSITDGNTAHAQIHVSAKSAILIDGTSGRVLFAKDEHHKRRIASITKIMTAV 69
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ K +K +T+S NA + S + G + L + + L+++S ND A AI
Sbjct: 70 LAIESGKMEK-----TVTVSPNAVKTEGSAIYLQPGQKVKLKDLVYGLMLRSGNDAAAAI 124
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + + FV MN ++ +G+ T F N HG+ H + + L + +
Sbjct: 125 AEYVGGSLDGFVFMMNQKAEQIGMENTKFQNPHGLDDHENLYSTAYDMALLTKYAMKIKE 184
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
Y K + + N G + + G KTG+T + +V++A + LI
Sbjct: 185 YRTVSGTKVYKAETMDRVWKNKNKLLTGLYPYSTGGKTGYTKIAKRTLVSTASKDGTDLI 244
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AV + D ++ + F N ++ + I+ +V
Sbjct: 245 AVTINDPDD---WDDHMNMFNYVFENYKTYVVAKKGGIPKLKKTFYGKHAFITRDVKYLL 301
Query: 301 KEIINYNTQMKEAKDKES 318
KE + ++ K
Sbjct: 302 KEDEIDDVKISTTLIKPK 319
>gi|229016825|ref|ZP_04173754.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
gi|229023030|ref|ZP_04179546.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
gi|228738278|gb|EEL88758.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
gi|228744477|gb|EEL94550.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
Length = 362
Score = 146 bits (367), Expect = 5e-33, Method: Composition-based stats.
Identities = 76/307 (24%), Positives = 121/307 (39%), Gaps = 13/307 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L++ +G V+ P AS+TK+MTA + K K+ +++S
Sbjct: 18 VSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTALLAAESGKMKEL-----VSVSNE 72
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A S K G + L++ + L+++S ND A IAE++ + + FV MN +K +
Sbjct: 73 AVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKEI 132
Query: 146 GLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
G+ THF N HG+ HY++A DMA+L+ + + F K + YP N
Sbjct: 133 GMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWKN 191
Query: 205 WAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+ A G KTGFT +G +V +A + LI V L A +L
Sbjct: 192 KHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSASSD---WDDHMNLFD 248
Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
GF + + + E + +K DK +
Sbjct: 249 KGFEHFKQTTVLGQGALAEINEKKYANHVYTKNSFSVPLTEEERKSVLLKVELDKSAKLT 308
Query: 322 DFEKITL 328
D KI
Sbjct: 309 DGVKIGK 315
>gi|238019958|ref|ZP_04600384.1| hypothetical protein VEIDISOL_01834 [Veillonella dispar ATCC 17748]
gi|237863482|gb|EEP64772.1| hypothetical protein VEIDISOL_01834 [Veillonella dispar ATCC 17748]
Length = 285
Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 73/275 (26%), Positives = 128/275 (46%), Gaps = 16/275 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+++ +++IA + +S + L+D +T ++ PD +PAS
Sbjct: 12 LKRLILMIAFIGAVILGASISHAAYIAPPSTVGEAVVLIDADTKEILFAKNPDKWMHPAS 71
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
TK++T K L TIS A+ SN + G +TL+ L+ ++V S
Sbjct: 72 TTKMVTLLTALEL---KGTQLDELATISSYATSMEESNLGVRVGDQITLEGVLEGMMVAS 128
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-- 173
ND AV +AE++ + + F + MN + G + F+N HG+ Q GH++TARD+A++
Sbjct: 129 GNDAAVVVAENVSGSVENFAKDMNRVAAKAGAKNSVFLNPHGLTQMGHHSTARDLAMIAA 188
Query: 174 --SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVA 230
Y+++ + TN + + GA+G+KTGFT A+G ++A
Sbjct: 189 YGMKYQMFRDKVANDYYKVPYQNRTPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIA 248
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
SA + ++I V+L + R + L GF
Sbjct: 249 SATRNGHTMIVVMLN---DDNRWDEAVQFLDYGFK 280
>gi|164686325|ref|ZP_02210355.1| hypothetical protein CLOBAR_02763 [Clostridium bartlettii DSM
16795]
gi|164601927|gb|EDQ95392.1| hypothetical protein CLOBAR_02763 [Clostridium bartlettii DSM
16795]
Length = 442
Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 90/365 (24%), Positives = 148/365 (40%), Gaps = 40/365 (10%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ + + + Y ++D TG V+ D PAS TK+ TAY+
Sbjct: 1 MITLINSSIVAFADETYDNVDLMANYGVVIDYETGKVLGGKNIDSKVYPASTTKIWTAYL 60
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
V +K L P+ I++ S+ + G T+ L+ L++ S+ND AV +A
Sbjct: 61 VVKNVK----NLDEPVEITE-PPGVDGSSMYLEVGEIFTVRELLQGLLIHSSNDAAVVLA 115
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
+ + + + F Q MN +K G THF N HG+ HYTT DMA+L+ + ++
Sbjct: 116 KYVSGSTQDFAQLMNKEAKKAGALNTHFNNPHGLPDDNHYTTPYDMAMLARKAMSEKVIR 175
Query: 185 ---------MHYFQIKGLEIKGKKY-PNTNWA--------------VGTFLGADGMKTGF 220
+I +Y NTN + DG+KTG+
Sbjct: 176 EIVSTKSISFKQQNTATSKINTSRYFTNTNLFLTSNDKITYRKQSIPIKYDIVDGIKTGY 235
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD- 279
T +G +++SA++ D +IA + + N S +LL GF N T + IN
Sbjct: 236 TDLAGRCLLSSAVKNDMRVIAAVFKSFGTNV-YVDSRTLLDYGFENYTSKTIINKDDYTK 294
Query: 280 -----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL----K 330
F ++ P S ++ E N + KE D + +K+ L
Sbjct: 295 TKRVLFTKEKEFIYQPKSSYKLILKNGEAQNSDYTYKENLDYHLPIYEGDKVGTLDVYNG 354
Query: 331 NKITK 335
NK+ K
Sbjct: 355 NKLEK 359
>gi|293553827|ref|ZP_06674442.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterococcus faecium
E1039]
gi|291602033|gb|EFF32270.1| D-alanyl-D-alanine carboxypeptidase DacA [Enterococcus faecium
E1039]
Length = 435
Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 63/350 (18%), Positives = 121/350 (34%), Gaps = 32/350 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L + +D +G ++ + + AS+TK++ Y+V +
Sbjct: 20 ASFLPAVAVQAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ G+ +NA G+ + +A+D+A
Sbjct: 140 KISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R + L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANAS 319
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + V + M K + +D +++T
Sbjct: 320 IPSLKTIDVKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITPTLDKKQVT 369
>gi|89097521|ref|ZP_01170410.1| hypothetical protein B14911_28020 [Bacillus sp. NRRL B-14911]
gi|89087817|gb|EAR66929.1| hypothetical protein B14911_28020 [Bacillus sp. NRRL B-14911]
Length = 387
Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats.
Identities = 65/288 (22%), Positives = 117/288 (40%), Gaps = 17/288 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++FL + + ML+ ++A L+D+ + ++ PAS
Sbjct: 1 MKKFLSALMVFMLTVHAGQSAVAKEEKEPAIVSEAAVLIDSQSNAILYSKNGSDRMYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
LTK+ TA L +T+S++A E + ++G TL + ++ +++ S
Sbjct: 61 LTKIATAIYAIKK-----GNLDDMVTVSRSAVETEGTKVYLEEGEKTTLRHLIEGMLINS 115
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTS-KNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
ND A AIAE + +++ +++N K + + THF N HG+ HYTTA DMA+++
Sbjct: 116 GNDAAAAIAEHIDGNIEEYERNLNTFLEKEVHVHNTHFTNPHGLFDERHYTTAEDMALIT 175
Query: 175 WRIKTDFPQYMHY------FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ Y + + + + + G G KTGF S +
Sbjct: 176 SYALKNNTFRTIYGTKELAWDGESWDTTIFTHHRMLKGEVPYTGITGGKTGFVNESKQTL 235
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
SA G L A+++ A + + +L GF
Sbjct: 236 ATSAENGKIQLTAIVMKADFKRDIYNDTKTLFDYGFSRFKSSVISKET 283
>gi|229172207|ref|ZP_04299771.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
gi|228611195|gb|EEK68453.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
Length = 362
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 76/308 (24%), Positives = 119/308 (38%), Gaps = 13/308 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +G V+ P AS+TK+MTA + K K +++S
Sbjct: 17 NVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAESGKMK-----EMVSVSN 71
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K G + L++ + L+++S ND A IAE++ + + FV MN +K
Sbjct: 72 EAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQ 131
Query: 145 LGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ THF N HG+ HY++A DMA+L+ + + F K + YP
Sbjct: 132 IGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWK 190
Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + A G KTGFT +G +V +A + LI V L A +L
Sbjct: 191 NKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSASSD---WDDHMNLF 247
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
GF + + E N +K DK +
Sbjct: 248 DKGFERFKQTNVVGQGALAEITEKKYANHVYTKNSFAVPLTEQERKNVVLKVELDKSAKL 307
Query: 321 IDFEKITL 328
D K+
Sbjct: 308 KDGVKVGK 315
>gi|303228596|ref|ZP_07315422.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica
ACS-134-V-Col7a]
gi|302516688|gb|EFL58604.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella atypica
ACS-134-V-Col7a]
Length = 279
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 71/271 (26%), Positives = 123/271 (45%), Gaps = 15/271 (5%)
Query: 4 FLVIIAMA----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
F++ +A + + + L+D + ++ PD +PAS TK+
Sbjct: 10 FILALAFIGAMLLGTVAHGAAPTPPSTIGEAVVLIDADNKEILFAKNPDKWMHPASTTKM 69
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+T K L TIS A+ SN + G +TL+ L+ ++V S ND
Sbjct: 70 VTLLTALEL---KGTQLDELATISPYATSMEESNLGVQVGDQITLEGVLEGMMVASGNDA 126
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----SW 175
AV +AE++ + + F + MN + G + F+N HG+ Q GH++TARD+A++
Sbjct: 127 AVVVAENVSGSVENFAKDMNRIAAKAGAKNSVFLNPHGLTQMGHHSTARDLALIAAYGMK 186
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQ 234
Y+++ + TN + + GA+G+KTGFT A+G ++ASA +
Sbjct: 187 YQMFRDKVANDYYKVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIASATR 246
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++I V+L + R + L GF
Sbjct: 247 NGHTMIVVMLN---DDNRWNEAVQFLDYGFK 274
>gi|253682141|ref|ZP_04862938.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
str. 1873]
gi|253561853|gb|EES91305.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
str. 1873]
Length = 377
Score = 145 bits (366), Expect = 6e-33, Method: Composition-based stats.
Identities = 76/346 (21%), Positives = 140/346 (40%), Gaps = 26/346 (7%)
Query: 1 MRQ---FLVIIAMAMLSNI-FPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDH 49
M++ ++++M +L NI F + A T +D+ T V+ E D
Sbjct: 1 MKKRILIFMVLSMCLLFNITFAYNVQAITPKNKLIYINARSAIAIDSKTKCVLYEKNSDM 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS TK+MT V + L +S A+ S +KKG +++L L
Sbjct: 61 LLPIASTTKIMTTLVALKY-----GNLDDKFEVSSKAANIRGSQVGYKKGESISLKELLY 115
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
L+++S ND A+ IAE L + +KF + MN + +G +HF + HG+ HY+TA D
Sbjct: 116 GLMLRSGNDAAITIAEGLSGSVEKFCELMNEYAVEIGALNSHFESPHGLDSQNHYSTAYD 175
Query: 170 MAILSW----RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+A ++ + + + K + Y N N + A+G+KTG+T +G
Sbjct: 176 LARITAKAKENELFNKIVAVKDVEAKEYGF-TRSYHNINKILYQIPNANGVKTGYTGGAG 234
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK--DFYQQ 283
+V S D +I V+L R K + + N +K + +
Sbjct: 235 KCLVTSVKDNDDDIIIVVLNCT---PRWKETGKIYKFVKENYDFKKITSKNQVIGNIIYN 291
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
++++ + + ++ + K S+ + +
Sbjct: 292 GNKKIDLICNKDIVVPVGKQEHCEFKIVKPKSIPSNVYKGMDLGKI 337
>gi|228996680|ref|ZP_04156317.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
gi|228762999|gb|EEM11909.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
Length = 361
Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats.
Identities = 80/331 (24%), Positives = 131/331 (39%), Gaps = 13/331 (3%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
M + L++ ++G V+ AS+TK+MTA +
Sbjct: 1 MCASVIPIHTYAQMNDVSAHNAILMEEHSGRVLYGKLEHESQKIASITKIMTALLAAESG 60
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K K+ + IS A S + G + L++ + L+++S ND A AIAE++
Sbjct: 61 KMKEVVP-----ISDKAVRVEGSAIYLQPGKKVPLEDLVYGLMLRSGNDAAQAIAENVGG 115
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+ + + F
Sbjct: 116 SIEGFVYLMNEKAKQIGMKDTHFSNPHGLDGDGTHYSSAYDMALLTRYAMGN-ETFRKIF 174
Query: 189 QIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
K + K YP N + A G KTGFT +G +V +A + LI V L
Sbjct: 175 GTKTYQSKMWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLN 234
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
A + L GF K + Q+ I + +
Sbjct: 235 ASND---WDDHMYLFDQGFKQYELTKVLRQGALSGLQEKKYTNHVYIKNDFAIPLTKDEK 291
Query: 306 YNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+K D+ + +D EK+ I ++
Sbjct: 292 KQVMLKVELDRSAKLVDGEKVGKTIVYINEE 322
>gi|283797579|ref|ZP_06346732.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
gi|291074687|gb|EFE12051.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
Length = 569
Score = 145 bits (366), Expect = 7e-33, Method: Composition-based stats.
Identities = 71/299 (23%), Positives = 125/299 (41%), Gaps = 34/299 (11%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPW 51
M+Q + I+ + + + + A + + ++D ++G V+ +
Sbjct: 1 MKQKFIRTILCFFLTAAVSAHPAYASQEWPSDVSIEADAGIVMDADSGTVLYGKNIHDTY 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108
+PAS+TK++T+ +V L +T SKNA S++ + G T+ + L
Sbjct: 61 SPASITKVLTSIIVLENCD-----LDEMVTFSKNAIYNVEADSSSAGYDTGDQATVRDCL 115
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L++KSAN+ A A+AE + T + F + MN +K LG +HF N G+ HY +A
Sbjct: 116 YALLLKSANEAANALAEHVAGTTEAFAEMMNEKAKELGCVDSHFANPSGLNDENHYVSAY 175
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-------------KKYPNTNWAVGTFLGADG 215
DMA+++ + + E+ K N+ G
Sbjct: 176 DMALITRY-AFENEIFEEIISTTYYELPPNARNPEGLGVSPGNKLIKKNFPEYR-PDVIG 233
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
KTG+T + +V A Q D +LI V+L + ++ +L GF N N
Sbjct: 234 GKTGYTSIALNTLVTGARQDDTTLITVVLHSRGTT--YSDTSRMLDFGFGNFRSVSLEN 290
>gi|240146057|ref|ZP_04744658.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
L1-82]
gi|257201873|gb|EEV00158.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
L1-82]
Length = 414
Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats.
Identities = 69/346 (19%), Positives = 129/346 (37%), Gaps = 34/346 (9%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ L+D ++G ++ E AS TK++T + L
Sbjct: 38 TEKPDQNSLYAKAAVLMDADSGRILYEKNGHQAMANASTTKILTCIIALENCD-----LD 92
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ +T+S A+ P + ++G L + L L+++S ND AVAIAE + T F +
Sbjct: 93 SEVTVSTLAASQPKVHLGMREGQKFYLKDLLYGLMLESYNDCAVAIAEHIAGTTGDFAKL 152
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN+ ++ +G ++F+ +G+ H+TTA D++++ + I
Sbjct: 153 MNDKAEEIGCEDSYFITPNGLDAKNENGFHHTTAADLSLIMRYCIKTSEMAEQFLTITRE 212
Query: 194 EI---------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
N N + GA KTGFT +G+ V + + D++ I +L
Sbjct: 213 GQYQFSDIDGKNSYTCCNHNAFLQMMDGALSGKTGFTGNAGYCYVGALKRDDRTFIVALL 272
Query: 245 GALDRNT---RNKVSASLLSMG---FYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
N + + L+ G F + + + Q + + I EEV T
Sbjct: 273 ACGWPNNKTYKWADTKKLMQYGISRFRKISLDEIELDAGEYAPVQVVDGQGTKIGEEVTT 332
Query: 299 -TQKEIINYNTQMKEAKDKESHF---------IDFEKITLLKNKIT 334
+ + N ++ KD+E H + +
Sbjct: 333 ELEVAPVKENVELLIEKDQEVHIEYQLSRKLYAPVTEGDFIGEITY 378
>gi|160937986|ref|ZP_02085343.1| hypothetical protein CLOBOL_02879 [Clostridium bolteae ATCC
BAA-613]
gi|158438980|gb|EDP16735.1| hypothetical protein CLOBOL_02879 [Clostridium bolteae ATCC
BAA-613]
Length = 492
Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats.
Identities = 68/341 (19%), Positives = 130/341 (38%), Gaps = 24/341 (7%)
Query: 1 MRQFLVII-AMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPDHPWN 52
MR+ II ++ M+ ++ + A+ + ++D ++G V+
Sbjct: 15 MRRISYIITSLIMVFSMATITAFAKPDWPIDTGIQSEAGIVMDMDSGAVLFAQNIHEQKI 74
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS+TKL+TA VV + A +T N + ++G +++ L ++
Sbjct: 75 PASITKLLTALVVIENTNDLDAPVTFSHDAIYNVESGAGNKFNLEEGDVLSVRQCLYAML 134
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
++S+N A A+AE + + + FV MN LG + +HF N G+ TTA DMAI
Sbjct: 135 LQSSNQSANALAEYVAGSRQAFVDMMNQRIAELGCNESHFANPSGLNDDTQRTTAYDMAI 194
Query: 173 LSWRIKTDFPQ------YMHYFQIKGLEIKGKKYPNTNWA-----VGTFLGADGMKTGFT 221
++ + G+ + + + A KTG+T
Sbjct: 195 IARACFQNPTVLEIASARTSTIPATANNPNGRTFSIEHKMLLSDDSNYYPDAIAGKTGWT 254
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+G +V A + + IAV L + + T + ++L F + + +
Sbjct: 255 SQAGQTLVTYARREGRGQIAVTLKS-TQKTHYSDTKTILDFCFAKFKNVNIAD----NEI 309
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
+ + I+ E + I + D + D
Sbjct: 310 EYVTGDTPVTIAGETYDPSELSIESGAVITIPNDAQFTDAD 350
>gi|255307153|ref|ZP_05351324.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile ATCC
43255]
Length = 394
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 80/356 (22%), Positives = 153/356 (42%), Gaps = 30/356 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++ + + + + + ++ L+D TG V+ PD ASL+K
Sbjct: 5 LKKIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSK 64
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND
Sbjct: 65 MMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGND 124
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTTAR 168
A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +TA+
Sbjct: 125 AAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAK 184
Query: 169 DMAILSWRIKTDFPQYM---HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
D+AIL + + + + + + + NTN + DG+KTG+T +G
Sbjct: 185 DIAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAG 244
Query: 226 FNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
+ + S + + +I V+LG +N R S +LL G N +K I+
Sbjct: 245 YCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKDSF 304
Query: 276 -IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
K +E+ T K+ + +++K + +K +
Sbjct: 305 IGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVKIK----NIEYPVKKGDTMG 356
>gi|298251261|ref|ZP_06975064.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
gi|297545853|gb|EFH79721.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
Length = 338
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 73/265 (27%), Positives = 123/265 (46%), Gaps = 16/265 (6%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
++ + A LLDT+TG+V+ + + P AS TK+MTA VV K+
Sbjct: 67 SVLTVVGGAPPIDAKAAYLLDTDTGNVLDDQNAEQPLPMASTTKIMTALVVIEAANLKQ- 125
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+T I + ++ SN+ G T+T+++ L L++ S +D A+ +A ++ + F
Sbjct: 126 EVTVSPDIPQYVFQHNGSNAKLVPGDTLTINDLLYALMLPSGDDAAIVLARAVAGSSDAF 185
Query: 135 VQHMNNTSKNLGLSATHFMNAHGV--------VQHGHYTTARDMAILSWRIKTDFPQ--- 183
V MN + L THF+N G+ GHY++ARD+A L+ ++
Sbjct: 186 VGMMNCFALRHHLFQTHFINPDGLTYYDANGKPLPGHYSSARDLARLTAYALSNPLFAKI 245
Query: 184 --YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
Y + + NTN + G+KTGFT +G+ +V SA + L+
Sbjct: 246 VGTRQYDLAWSPKHGAYHWTNTNDLFNLYPATTGVKTGFTNEAGYCLVFSATRDHHHLVG 305
Query: 242 VILGAL--DRNTRNKVSASLLSMGF 264
+L + D N R + + +LL GF
Sbjct: 306 TVLFSSDTDTNQRFRDAKTLLEWGF 330
>gi|295089928|emb|CBK76035.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
saccharolyticum K10]
Length = 569
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 71/299 (23%), Positives = 125/299 (41%), Gaps = 34/299 (11%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPW 51
M+Q + I+ + + + + A + + ++D ++G V+ +
Sbjct: 1 MKQKFIRTILCFFLTAAVSAHPAYASQEWPSDVSIEADAGIVMDADSGTVLYGKNIHDTY 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108
+PAS+TK++T+ +V L +T SKNA S++ + G T+ + L
Sbjct: 61 SPASITKVLTSIIVLENCD-----LDEMVTFSKNAVYNVEADSSSAGYDTGDQATVRDCL 115
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L++KSAN+ A A+AE + T + F + MN +K LG +HF N G+ HY +A
Sbjct: 116 YALLLKSANEAANALAEHVAGTTEAFAEMMNEKAKELGCVDSHFANPSGLNDENHYVSAY 175
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-------------KKYPNTNWAVGTFLGADG 215
DMA+++ + + E+ K N+ G
Sbjct: 176 DMALITRY-AFENEIFEEIISTTYYELPPNARNPEGLGVSPGNKLIKKNFPEYR-PDVIG 233
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
KTG+T + +V A Q D +LI V+L + ++ +L GF N N
Sbjct: 234 GKTGYTSIALNTLVTGARQDDTTLITVVLHSRGTT--YSDTSRMLDFGFGNFRSVSLEN 290
>gi|295115036|emb|CBL35883.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SM4/1]
Length = 569
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 71/299 (23%), Positives = 125/299 (41%), Gaps = 34/299 (11%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPW 51
M+Q + I+ + + + + A + + ++D ++G V+ +
Sbjct: 1 MKQKFIRTILCFFLTAAVSAHPAYASQEWPSDVSIEADAGIVMDADSGTVLYGKNIHDTY 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNAL 108
+PAS+TK++T+ +V L +T SKNA S++ + G T+ + L
Sbjct: 61 SPASITKVLTSIIVLENCD-----LDEMVTFSKNAVYNVEADSSSAGYDTGDQATVRDCL 115
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L++KSAN+ A A+AE + T + F + MN +K LG +HF N G+ HY +A
Sbjct: 116 YALLLKSANEAANALAEHVAGTTEAFAEMMNEKAKELGCVDSHFANPSGLNDENHYVSAY 175
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKG-------------KKYPNTNWAVGTFLGADG 215
DMA+++ + + E+ K N+ G
Sbjct: 176 DMALITRY-AFENEIFEEIISTTYYELPPNARNPEGLGVSPGNKLIKKNFPEYR-PDVIG 233
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
KTG+T + +V A Q D +LI V+L + ++ +L GF N N
Sbjct: 234 GKTGYTSIALNTLVTGARQDDTTLITVVLHSRGTT--YSDTSRMLDFGFGNFRSVSLEN 290
>gi|257898083|ref|ZP_05677736.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com15]
gi|257835995|gb|EEV61069.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium Com15]
Length = 435
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 63/350 (18%), Positives = 121/350 (34%), Gaps = 32/350 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L + +D +G ++ + + AS+TK++ Y+V +
Sbjct: 20 ASFLPAVAVQAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWDDKVSISDYAENLSVTPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ + +NA G+ + +A+D+A
Sbjct: 140 KISGSEAKFTERMKEQLKDWDIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R +A L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETARLMDYCYDNWSEKELGKANAS 319
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + V + M K + +D +++T
Sbjct: 320 IPSLKTIDVKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITPTLDKKQVT 369
>gi|126699758|ref|YP_001088655.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile 630]
gi|115251195|emb|CAJ69026.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium difficile]
Length = 397
Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats.
Identities = 80/356 (22%), Positives = 153/356 (42%), Gaps = 30/356 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++ + + + + + ++ L+D TG V+ PD ASL+K
Sbjct: 8 LKKIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSK 67
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND
Sbjct: 68 MMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGND 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTTAR 168
A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +TA+
Sbjct: 128 AAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAK 187
Query: 169 DMAILSWRIKTDFPQYM---HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
D+AIL + + + + + + + NTN + DG+KTG+T +G
Sbjct: 188 DIAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAG 247
Query: 226 FNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
+ + S + + +I V+LG +N R S +LL G N +K I+
Sbjct: 248 YCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKDSF 307
Query: 276 -IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
K +E+ T K+ + +++K + +K +
Sbjct: 308 IGKKYIKGMKELEVTLKAKDELYTILKDDESIKSEVKIK----NIEYPVKKGDTMG 359
>gi|319405647|emb|CBI79270.1| Penicillin-binding protein [Bartonella sp. AR 15-3]
Length = 390
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 81/352 (23%), Positives = 140/352 (39%), Gaps = 21/352 (5%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ + +L + + D NT ++ E D + PASL KLMTA V
Sbjct: 7 VLFSLVWILVFNEQGQTKKFQTSALQLLIFDDNTDTILFEKQSDVVFFPASLVKLMTAEV 66
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDI 119
VF LK+ T +S+NA + K+ + +++ + L+ LI+ + ND
Sbjct: 67 VFYQLKKGFLNKTQKFKVSENAWRKGGAPSGTTTMFAKEKTEISVFDLLRGLIIVNGNDA 126
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ +AE + E F + MN +K LGL +HF+NA G+ + G + T RD+ L+ I
Sbjct: 127 AITLAEGIAGNEANFAKLMNKRAKTLGLLQSHFVNATGLPEKGQFITLRDIITLARHISR 186
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
++P Y ++ N N + +G+ G++ GF+ V SA + +
Sbjct: 187 EYPDYYALYREPKFTWNKITQHNKNSLLFQENDIEIEGLGFGYSEEIGFSTVVSACKKQR 246
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY---QQNLSNEVPNI-- 292
+ + G ++ R K +L + Y N VP I
Sbjct: 247 RIFLAVNGLQNKKERTKEIERILEWAMTAFDLKTVFTRGETVGYASVYGGAQNSVPLIVK 306
Query: 293 --------SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ K II Y+ +K I +I K + +K
Sbjct: 307 EPISFMLSKQKTFNDVKAIIQYHGPLKAPITI-GEKIGIIQIFSDKQLLVEK 357
>gi|163943071|ref|YP_001647955.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
gi|163865268|gb|ABY46327.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
Length = 423
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 82/332 (24%), Positives = 133/332 (40%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T +TIS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS I T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW ++ GADG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S +L+ GF N +K K N I +++ P V TT+ +Y
Sbjct: 283 ERFTESRALIEYGFNNFEKQKLKIDKNNKISVVKGKEDYVTVAPEKEVTVVTTKGSKSSY 342
Query: 307 NTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K +K + + + +
Sbjct: 343 KISTEADKSLAEDGHLVAPIKKDAKVGSIVLE 374
>gi|228900148|ref|ZP_04064381.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
4222]
gi|228859554|gb|EEN03981.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
4222]
Length = 362
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 78/308 (25%), Positives = 118/308 (38%), Gaps = 13/308 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +G V+ P AS+TK+MTA + K K +++S
Sbjct: 17 NVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAESGKMK-----EMVSVSN 71
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K G + L++ + L+++S ND A IAES+ + FV MN +K
Sbjct: 72 EAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNEKAKE 131
Query: 145 LGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ THF N HG+ HY++A DMA+L+ + + F K + YP
Sbjct: 132 IGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGNES-FKKIFGTKTYKSDSWDYPWK 190
Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + A G KTGFT +G +V +A + LI V L A +L
Sbjct: 191 NKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSASSD---WDDHMNLF 247
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
GF K + + E N +K DK
Sbjct: 248 DKGFERFKQTKVLGQGAIAEINEKKYANHVYTKNSFSVPLTEEERKNVLLKVELDKSITL 307
Query: 321 IDFEKITL 328
D K+
Sbjct: 308 EDGVKVGK 315
>gi|291543602|emb|CBL16711.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13]
Length = 376
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 78/318 (24%), Positives = 127/318 (39%), Gaps = 3/318 (0%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
P A Y LL+ TG ++ E ++ KLMT + L+
Sbjct: 20 LPEPGAAAGKPCRAYALLEARTGQLLLEENSSESLPMGTMAKLMTMLLTAEALESGALSE 79
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T +T S A+ ++ G MT+ + L+ +I+ +AND AVA+AE++ TE++FV
Sbjct: 80 NTAVTASPAANAQKGASIWLMPGEKMTVGDLLRGMIIGNANDAAVALAEAVSGTEEQFVM 139
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI-LSWRIKTDFPQYMHYFQIKGLEI 195
MN LGL +T F A G+ + G TTA D+ + L
Sbjct: 140 DMNARGFELGLRSTVFTCASGLSEEGQVTTAADLGRLCCKLTEYPVLTPYMTTWRTFLRG 199
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ + N N V ++ G GMK G +G+ + A+A +GD +AV+LG + R +
Sbjct: 200 EQTELVNENTLVRSYDGLLGMKAGHGERTGYTLAAAAQRGDGIYVAVVLGCQEDADRFSI 259
Query: 256 SASLLSMGFYNK--TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
+ +LLS GF + T +K + ++ + + T
Sbjct: 260 AKTLLSKGFGSYQVTTPAFSGEFLKPLQVLHGTDTAVEVEAQGLTGITVPKGNAGLQTVL 319
Query: 314 KDKESHFIDFEKITLLKN 331
E K L
Sbjct: 320 VLPEYVEAPVSKGQQLGT 337
>gi|194016923|ref|ZP_03055536.1| D-alanyl-D-alanine carboxypeptidase DacB (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 5*)
(PBP-5*) [Bacillus pumilus ATCC 7061]
gi|194011529|gb|EDW21098.1| D-alanyl-D-alanine carboxypeptidase DacB (DD-peptidase)
(DD-carboxypeptidase) (Penicillin-binding protein 5*)
(PBP-5*) [Bacillus pumilus ATCC 7061]
Length = 383
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 71/327 (21%), Positives = 133/327 (40%), Gaps = 16/327 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ ++ + L+D +G V+ AS+TK+MTA + K K
Sbjct: 20 FSSHAKADMSLSVSARSAILIDGQSGRVLFGKDEHEKRRIASITKIMTAVLAIESGKMK- 78
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ +SK A + S+ K+G ++L++ L+++S ND AVAIAE + + +
Sbjct: 79 ----DTVKVSKRAIQAEGSSIYLKEGQKVSLEDLTYGLMLRSGNDAAVAIAEHVGGSLEG 134
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F+ MN + LG+ T+F N HG+ H H+ ++ + + + QY
Sbjct: 135 FIFMMNQKASELGMENTNFQNPHGLDDHKHHYSSAYDMAILTKYAMEHKQYQKIAGTTFY 194
Query: 194 EIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ K + N G + + G KTG+T + +V++A +GD +LIAV + A D
Sbjct: 195 KAKTMEGYWKNKNKLVTGLYKYSTGGKTGYTKLAKRTLVSTAAKGDAALIAVTINAPDD- 253
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV----CTTQKEIINY 306
K S+ F + + + I +V +K+++
Sbjct: 254 --WKDHISMFEYAFDHYKTYVLAEKGRLASLKGTFYEKKAFIKRDVDYFLNEDEKKLVEI 311
Query: 307 NTQMKEAKDKESHFIDFEKITLLKNKI 333
T+M + K + ++
Sbjct: 312 ETEMLTPQKKWKKNAEAIP-DVVGKMT 337
>gi|164687904|ref|ZP_02211932.1| hypothetical protein CLOBAR_01549 [Clostridium bartlettii DSM
16795]
gi|164602317|gb|EDQ95782.1| hypothetical protein CLOBAR_01549 [Clostridium bartlettii DSM
16795]
Length = 399
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 79/353 (22%), Positives = 144/353 (40%), Gaps = 24/353 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ L+ I + + + L+D T + E PD ASL+K+MT
Sbjct: 10 KVLLLSIILNIFTTSISLAYDNIDRYSKGSILIDQLTNRTLYEKNPDKKMPLASLSKMMT 69
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ +KE K I I + ++ S+ K G + L + L++ S ND A+
Sbjct: 70 FLIAIESIKEGKVKENDIIEIDQEIAKVKGSSYKLKVGEKVPLIELMNGLMIVSGNDAAI 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----------GHYTTARDMA 171
AIA+ + + FV+ MN +K LG+ T F+N +G+ + + +T RD++
Sbjct: 130 AIAKHIGGSVDDFVKIMNKKTKELGMKNTSFVNPNGLPIYSLKEPSKPPKENISTPRDIS 189
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNI 228
IL+ + ++ + + K + ++ NTN + DG+KTG+T +G+ +
Sbjct: 190 ILAKYMFDNYEKEVTSITDKQVYSYPERGFCKNNTNVLLQLIPDVDGVKTGYTGNAGYCL 249
Query: 229 VASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
S D LI V+LG +N R + S SLL G N + +
Sbjct: 250 CFSMKTHKDDKNDCDNRLIGVVLGTNHKNKRTQASMSLLEYGKQNFKTKNIAQK--DELV 307
Query: 282 QQNLSNEVPNISEEVCTTQKEII--NYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +P++ + + I N + +K + ++ LL
Sbjct: 308 GKKYICGIPDMEVTLKAEEALYIVCNEDEDIKSEVTLKEINYPIKQGELLGVI 360
>gi|291459956|ref|ZP_06599346.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291417297|gb|EFE91016.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 509
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 77/280 (27%), Positives = 122/280 (43%), Gaps = 22/280 (7%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+LS+ + L+D +TG V+ E + PAS+TK+MTA VV
Sbjct: 25 CFLLSSYAELSWPSADLTAVSAALMDADTGAVLFEKNGEQRMYPASITKVMTALVVLKHA 84
Query: 70 KEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L ++ S +A Y SN+ +G +T+ + L L++KSAN+ A A+AE
Sbjct: 85 -----NLEDQVSFSHDAVYNVDYGSSNAQIDEGDVLTVSDCLHALLLKSANEAANALAEH 139
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ + +KF + MN + LG S THF N G+ HYTTA DMA++ D +++
Sbjct: 140 VAGSREKFAEMMNEEAAALGCSGTHFSNPSGLFSEDHYTTAHDMALIGQAAFRD-KRFLD 198
Query: 187 YFQIKGLEIKGK-------KYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ K +KG + KTGFT +G ++ A
Sbjct: 199 IEKEKSYTLKGCRRNPEGITIYMEHKMLLQNSPYYDERVVAGKTGFTKDAGNTLLTLAQS 258
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G + LIAV+LG + +L +GF ++
Sbjct: 259 GKRRLIAVVLGDKTPY-HYSDTRALFDLGFGQTENQPLAE 297
>gi|298246708|ref|ZP_06970513.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
gi|297549367|gb|EFH83233.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
Length = 338
Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats.
Identities = 73/265 (27%), Positives = 121/265 (45%), Gaps = 16/265 (6%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
++ + A LLD +TG+V+ + + P AS TK+MTA VV KK
Sbjct: 67 SVLTVMGGAPPIDAKAAYLLDIDTGNVLDDQNAEQPLPMASTTKIMTALVVIEAANLKKE 126
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
T I + ++ SN+ G T+T+++ L L++ S +D A+ +A ++ + F
Sbjct: 127 A-TVSPDIPQYVFQHNGSNAKLMPGDTLTINDLLYALMLPSGDDAAIVLARAVAGSSDAF 185
Query: 135 VQHMNNTSKNLGLSATHFMNAHGV--------VQHGHYTTARDMAILSWRIKTDFPQ--- 183
V MN + L THF+N G+ GHY++ARD+A L+ ++
Sbjct: 186 VGMMNRFALRHHLFQTHFINPDGLTYYDANGNPLPGHYSSARDLARLTAYALSNPLFAKI 245
Query: 184 --YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
Y + + NTN + G+KTGFT +G+ +V SA + L+
Sbjct: 246 VGTRQYDLAWSPKHGAYHWANTNDLFNLYPATTGVKTGFTNEAGYCLVFSATRDHHHLVG 305
Query: 242 VILGAL--DRNTRNKVSASLLSMGF 264
+L + D N R + + +LL GF
Sbjct: 306 TVLFSSNTDTNQRFRDAKTLLEWGF 330
>gi|225871199|ref|YP_002747146.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi
4047]
gi|225700603|emb|CAW95132.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
subsp. equi 4047]
Length = 412
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 67/366 (18%), Positives = 145/366 (39%), Gaps = 32/366 (8%)
Query: 1 MRQFLVIIAMAMLSNIF-PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ L+ + + +S + P + + ++ ++G ++ E D + ASL+K+
Sbjct: 1 MKKVLIALTILAISCLAYPAQADHYDISAKHAIAVELDSGKILYEKDADKTVSVASLSKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+TAY+V+ ++ K + +TIS + ++ T+ LK LIV +A
Sbjct: 61 LTAYLVYKEVQAGKLKWDSSVTISNYPYKLTTNYTISNVPLDARKYTVKELLKALIVTNA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--------------G 162
N A+A+AE + TE KFV M K+ G++ +NA G+ H
Sbjct: 121 NSPAIALAEKIGGTEAKFVDKMIAQLKDWGITGAKVVNASGLPNHILGEHIYPGSSLDDD 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+A+++ + +FP+ + E ++ + N+ + G DG+
Sbjct: 181 NQFSAADLALVTSHLLKEFPEVLKLSSQVQAEFNHQQIFSYNYMLKGMPNYRDGVDGLFV 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKIN 274
++ G + +A++++ + +I V+L A + + LL + +
Sbjct: 241 SYSEKGGSSFLATSVENNMRIITVVLNADHAQDNDTAVFTATNQLLQYVLTHFKKVVVLE 300
Query: 275 YIIKDFYQQNLSNEVPNI------SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
D + + P +++ + T + + K +K
Sbjct: 301 KGKPDQLKALPVLDSPQKKIQLVPKKKLTMIKALDDKSKTTFQVSDTKNPLVAPIQKGQT 360
Query: 329 LKNKIT 334
L
Sbjct: 361 LAKATL 366
>gi|111115435|ref|YP_710053.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii PKo]
gi|216263478|ref|ZP_03435473.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii ACA-1]
gi|110890709|gb|ABH01877.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii PKo]
gi|215980322|gb|EEC21143.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia afzelii ACA-1]
Length = 401
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 80/321 (24%), Positives = 128/321 (39%), Gaps = 25/321 (7%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L+D +T V+ P+ + PASLTK++T Y +++ L + + IS +AS
Sbjct: 40 AKSIVLMDFDTKRVLYSKNPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99
Query: 88 EYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
Y +KG + + LK L V S ND ++AIAE + FV MN +
Sbjct: 100 YYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDASIAIAEFVVGDLNSFVNLMNINAF 159
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----- 198
NLGL HF+ G + TA DMA + F ++ +K
Sbjct: 160 NLGLFNMHFVEPSGYSN-ENKITALDMAFFAKSYVEKFKFMLNIHSLKYFVYPKSKNLGT 218
Query: 199 ---------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K N N + + +DG+KTG+ SG N+VA+A++G++ LIAV+LG
Sbjct: 219 TLSSKFLNLKQRNANLLIDDYPYSDGLKTGYIKESGLNLVATALKGERRLIAVVLGVEKG 278
Query: 250 NTRNKV------SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
R + +L GF + I + + Y + E +
Sbjct: 279 INRFGEKMRALIAKNLFEYGFNEYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYVLTKD 338
Query: 304 INYNTQMKEAKDKESHFIDFE 324
+ DK + +
Sbjct: 339 EFDKINISYTVDKLVAPLSGD 359
>gi|255101277|ref|ZP_05330254.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile
QCD-63q42]
Length = 394
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 82/355 (23%), Positives = 157/355 (44%), Gaps = 25/355 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++ + + + + + ++ L+D TG V+ PD ASL+K
Sbjct: 5 LKKIISLAMILVFIIPNYSYADDKSVDKYSKTSILIDQETGRVLYSKEPDMKVPLASLSK 64
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+MT + ++ K+ T + I K+ + S+ K G + L ++ L++ S ND
Sbjct: 65 MMTFLLAIEAIENKEVKETDKVKIDKSIASVKGSSYKLKDGEEVPLIELMRGLMIVSGND 124
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV----------VQHGHYTTAR 168
A+AIA+ +CKT++ FV MN +K +G+S THF+N +G+ + +TA+
Sbjct: 125 AAIAIAKHICKTKEAFVDRMNKKAKEIGMSNTHFLNPNGLPIYDLSNPKKPAKENISTAK 184
Query: 169 DMAILSWRIKTDFPQYM---HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
D+AIL + + + + + + + NTN + DG+KTG+T +G
Sbjct: 185 DIAILGKYMFDHYEKQVTAITDMETYTNSDRSFEKSNTNALLRIIPEVDGIKTGYTGNAG 244
Query: 226 FNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
+ + S + + +I V+LG +N R S +LL G N +K I+
Sbjct: 245 YCLSFSMVVNKNDKNEKKRRVIGVVLGTNHKNKRTSASLALLKYGKENFNMKKVIDKDSF 304
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
I K + + EV +++ T + + K+ E + + ++K
Sbjct: 305 IGKKYIKGMKELEVTLKAKDELYTILKGDESIKSEVKIKNIEYPVKKGDTMGIIK 359
>gi|319404207|emb|CBI77800.1| Penicillin-binding protein [Bartonella rochalimae ATCC BAA-1498]
Length = 390
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 75/337 (22%), Positives = 130/337 (38%), Gaps = 11/337 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ + +L + +LD NT ++ E D + PASL KLMTA V
Sbjct: 7 VLFSLIWILIFNEQGQTKKFQTSALQLLILDDNTDTILFEKQSDIVFFPASLAKLMTAEV 66
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDI 119
VF LK+ T +S+NA + K+ + +++ + L L++ + ND
Sbjct: 67 VFYQLKKGFLNKTQKFKVSENAWRKGGAPSGTTTMFAKEKTEISIFDLLHGLVIVNGNDA 126
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
AV +AE + E F + MN +K LGL +HF+NA G+ + G +TT RD+ L I
Sbjct: 127 AVILAEGIAGNEANFAKLMNKRAKTLGLLHSHFVNATGLPEKGQFTTLRDIITLVRHIAR 186
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
++P Y ++ N N + +G+ G++ GF+ V SA Q
Sbjct: 187 EYPDYYALYREPNFTWNKITQRNKNSLIFQENDVKIEGLGFGYSEEVGFSTVISAYNNQQ 246
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
+ I G ++ R K +L + Y ++ +
Sbjct: 247 RIFLAINGLQNKQERTKEVKRILEWAMTAFDLKTVFTRDEVVGYASVYGGAQNSVPLIVK 306
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
E + + N+N + +
Sbjct: 307 EPISFMLLKQKNFNDVNAIIQYHGPLKAPVTTGQKVG 343
>gi|257879976|ref|ZP_05659629.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
1,230,933]
gi|257893087|ref|ZP_05672740.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
1,231,408]
gi|257814204|gb|EEV42962.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
1,230,933]
gi|257829466|gb|EEV56073.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
1,231,408]
Length = 435
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 63/350 (18%), Positives = 121/350 (34%), Gaps = 32/350 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L + +D +G ++ + + AS+TK++ Y+V +
Sbjct: 20 ASFLPAVAVQAEDTFKVNAKAAFAVDAQSGKILYDQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWGDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ G+ +NA G+ + +A+D+A
Sbjct: 140 KISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEGTGENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R + L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANAS 319
Query: 279 -DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + V + M K + +D +++T
Sbjct: 320 IPSLKTIDVKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITPTLDKKQVT 369
>gi|229020609|ref|ZP_04177345.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
gi|228740670|gb|EEL90932.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
Length = 425
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 89/374 (23%), Positives = 148/374 (39%), Gaps = 39/374 (10%)
Query: 1 MRQFLVIIAMAMLS--NIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ L I+ + +LS ++ S AE + L D +TG ++ E PD AS
Sbjct: 3 MKKILSILLVFLLSISSLGVTTSHAEEKIHIEAAAALLFDADTGKILHEQNPDELLAIAS 62
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KL+ Y V +KE K T + IS A E +N ++ L
Sbjct: 63 MSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELYHSI 122
Query: 116 ANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
A + +L + +EK F+ N +K LGL F+NA G+
Sbjct: 123 VIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 182
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA----VG 208
+ +ARDM ILS I T +P+ + + + K + N NW
Sbjct: 183 DPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 242
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G+DG+KTG + +G+ +A +GD LI+VI+ + R S +L+ GF N
Sbjct: 243 AYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMDERFTESRALIEYGFNNFE 302
Query: 269 DRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES---HFI 321
+K K N I +++ P V T + Y + K
Sbjct: 303 KQKLKVDKNNKISVVKGKEDYVTVAPEKEVIVVTAKGNKAPYKISTEADKSLAEDGHLVA 362
Query: 322 DFEKITLLKNKITK 335
+K + + + +
Sbjct: 363 PIKKDAKVSSIVLE 376
>gi|258512050|ref|YP_003185484.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257478776|gb|ACV59095.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 290
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 66/261 (25%), Positives = 119/261 (45%), Gaps = 12/261 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + + D V+ + D P PAS TKLMTA ++
Sbjct: 25 FAVLAPWAQAETTRPPAVNAKAAVVYDATDRKVLYDKRGDEPMYPASTTKLMTAILLVQH 84
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
P+ IS+ AS P + G+ +T + AL LI+KSAND+A IAE++
Sbjct: 85 -----LQPDDPVYISETASRQPRVRLGLRPGTELTAEQALLALIMKSANDVAYGIAETIG 139
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+++ F + MN ++ +G + T F+ +G+ H T+A+D+A+++ + T +P+ +
Sbjct: 140 GSQEGFARMMNVEARLIGCTHTQFVTPNGLHADAHTTSAKDIALITAKAIT-YPRIVRAM 198
Query: 189 QIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQ--GDQSLIAV 242
Q I GK N N + + G KTGFT + + + + + L++V
Sbjct: 199 QTPQATIAGKTIRNGNRLLYSPPASIGEFIGGKTGFTSRAMYCLATAVRRPYDGHILVSV 258
Query: 243 ILGALDRNTRNKVSASLLSMG 263
+ GA ++ + + LL+
Sbjct: 259 VFGAPRKSLMYRETVRLLTWA 279
>gi|229160519|ref|ZP_04288514.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
gi|228622929|gb|EEK79760.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
Length = 362
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 75/308 (24%), Positives = 119/308 (38%), Gaps = 13/308 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +G V+ AS+TK+MTA + K K +++S
Sbjct: 17 NVSARNAVLMEQQSGRVLYGKAEHESQKIASITKIMTALLAAESGKMK-----EMVSVSN 71
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K G + L++ + L+++S ND A IAE++ + + FV MN +K
Sbjct: 72 EAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQ 131
Query: 145 LGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ THF N HG+ HY++A DMA+L+ + + F K + YP
Sbjct: 132 IGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWK 190
Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + A G KTGFT +G +V +A + LI V L A +L
Sbjct: 191 NKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSASSD---WDDHMNLF 247
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
GF K + + E + +K DK +
Sbjct: 248 DKGFERFKQTKVLGQGALAEINEKKYANHVYTKNSFSVPLTEEEKKSVVLKVELDKSTKL 307
Query: 321 IDFEKITL 328
D K+
Sbjct: 308 TDGVKVGK 315
>gi|195978796|ref|YP_002124040.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.1 [Streptococcus
equi subsp. zooepidemicus MGCS10565]
gi|195975501|gb|ACG63027.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.1 [Streptococcus
equi subsp. zooepidemicus MGCS10565]
Length = 428
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 65/366 (17%), Positives = 140/366 (38%), Gaps = 32/366 (8%)
Query: 1 MRQFLVIIA-MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ L+ + +A+ +P + + ++ ++G ++ E D + ASL+K+
Sbjct: 17 MKKVLIALTILAISCLAYPAQADHYDISAKHAIAVELDSGKILYEKDADKTVSVASLSKV 76
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+TAY+V+ ++ K + +TIS ++ T+ LK LIV +A
Sbjct: 77 LTAYLVYKEVQAGKLKWDSSVTISNYPYELTTNYTISNVPLDARKYTVKELLKALIVTNA 136
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--------------G 162
N A+A+AE + TE KFV M K+ G++ +NA G+ H
Sbjct: 137 NSPAIALAEKIGGTEAKFVDKMIAQLKDWGITGAKVVNASGLPNHILGEHIYPGSSLDDD 196
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+A+++ + +FP+ + E ++ + N+ + G DG+
Sbjct: 197 NQFSAADLALVTSHLLKEFPEVLKLSSQVQAEFNHQQIFSYNYMLKGMPNYRDGVDGLFV 256
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKIN 274
++ G + +A++++ + +I V+L A + + LL + +
Sbjct: 257 SYSEKGGSSFLATSVENNMRIITVVLNADHAQDNDTAVFTATNQLLQYVLTHFKKVVVLE 316
Query: 275 YIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+++ + T + + K +K
Sbjct: 317 KGKPDQLKALPVLDSPQKKVQLVPKKKLTMIKALDDKSKTTFQISDTKNPLVAPIQKGQT 376
Query: 329 LKNKIT 334
L
Sbjct: 377 LAKATL 382
>gi|152975589|ref|YP_001375106.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152024341|gb|ABS22111.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
391-98]
Length = 337
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 61/276 (22%), Positives = 117/276 (42%), Gaps = 12/276 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M FL ++ + F + L+D ++G ++ + P+ L+KLM
Sbjct: 8 MLIFLSLLITIAIVLYFYIYVNGPAIQSQSAILIDADSGEIVYKKNETSPFPSGDLSKLM 67
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y++ + + I N+ ++ S +T+ + + + N A
Sbjct: 68 TEYILLERIHNGTLKWEDEVIIKDNSFHIGANDIGTTVKSDITIRDLFHAVALTGNNRAA 127
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLG-LSATHFMNAHGVVQHGHYT---TARDMAILSWR 176
+A+AE + E+ F++ MN ++ LG T+F+N GV TA D + L+ +
Sbjct: 128 LALAEHISTNEENFIKLMNEKARQLGLSKDTYFINVTGVSNKQEQFSKITALDASKLARQ 187
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNI 228
+ D+P + + + K N + DG++T F+ +G++
Sbjct: 188 LLYDYPTILKSSSMTSYQFIFKDIHVFNTNRMLYSLDKNVKLKSVDGLQTSFSPTTGYSF 247
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
V +A + D+ LI+V+LGA N+ S L + GF
Sbjct: 248 VGTAKEKDRRLISVVLGAKGENSSFIESKKLFNYGF 283
>gi|219685272|ref|ZP_03540092.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii Far04]
gi|219673368|gb|EED30387.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii Far04]
Length = 392
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 77/321 (23%), Positives = 123/321 (38%), Gaps = 25/321 (7%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L+D +T ++ P+ + PASLTK++T Y +++ L + + IS +AS
Sbjct: 31 AKSIVLMDFDTKRILYSKNPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 90
Query: 88 EYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
Y +KG + + LK L V S ND ++AIAE + FV MN
Sbjct: 91 YYNAPLNSSLMFLEKGQIVNFEEILKGLSVSSGNDASIAIAEFVVGDLNSFVNLMNINVL 150
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----- 198
NLGL HF+ G + TA DM+ F ++ +K
Sbjct: 151 NLGLLNMHFVEPSGYSN-ENKITALDMSFFVKSYIEKFKFMLNIHSLKYFVYPKSKNLGT 209
Query: 199 ---------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K N N + + +DG+KTG+ SG N+VA+A + + LIAV+LG
Sbjct: 210 TLSSKFLNLKQKNANLLISDYPYSDGLKTGYIKESGLNLVATAQKDGRRLIAVVLGVEKG 269
Query: 250 NTRNKV------SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
R + L GF + I + + Y + E +
Sbjct: 270 INRFGEKMRALIAKDLFEYGFNEYSKFSLIVKLKEKVYNGTVDTVALFSKEPFYYVLTKD 329
Query: 304 INYNTQMKEAKDKESHFIDFE 324
++ DK + +
Sbjct: 330 EFDKLKISYTVDKLVAPLSGD 350
>gi|323691411|ref|ZP_08105685.1| hypothetical protein HMPREF9475_00547 [Clostridium symbiosum
WAL-14673]
gi|323504554|gb|EGB20342.1| hypothetical protein HMPREF9475_00547 [Clostridium symbiosum
WAL-14673]
Length = 513
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 75/353 (21%), Positives = 133/353 (37%), Gaps = 39/353 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ + ++ ++ P + + ++D ++ VI
Sbjct: 33 MKKLMSLLLSIIMILAGPAMTSYAKPDWPADTGIQSEAGIVMDMDSKTVIFGQNIHVQKA 92
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNAL 108
PAS+TKL+TA VV L +T S +A + + + G MT+ + L
Sbjct: 93 PASITKLLTALVVIENA-----NLDDMVTFSDDAIHNVEEGAGNKNALEPGDKMTVKDCL 147
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+++ S+N A A+AE + + FV MN K LG +HF N G+ TT
Sbjct: 148 YHMLLTSSNQSANALAEHVAGSRDAFVAMMNEKVKELGCENSHFANPSGLNDDTQLTTVY 207
Query: 169 DMAILSWRIKTD-----------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
DMA++ + + G+ IK + T + A K
Sbjct: 208 DMALIGTAAYENPVLLEIGSAKSYRLPPTANNPDGVTIKMEHKMLTEGDPNYYQAAIAGK 267
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN--- 274
TGFT +G +V A + D+ LIAV + + T + + +LL GF + K
Sbjct: 268 TGFTSIAGQTLVTYASKDDRKLIAVTMKS-TEFTHYQDTKALLDFGFDRFKNIKIAENET 326
Query: 275 ---YIIKDFYQQNLSNEVPNISEE----VCTTQKEIINYNTQMKEAKDKESHF 320
+ + S E ++S + + + + + K E+H
Sbjct: 327 SYTTGDQPVELGDSSYEPSDLSIDPKAVITVPKDAQFSDTDKNVVTKLPENHP 379
>gi|294649783|ref|ZP_06727186.1| D-ala-D-ala-carboxypeptidase [Acinetobacter haemolyticus ATCC
19194]
gi|292824334|gb|EFF83134.1| D-ala-D-ala-carboxypeptidase [Acinetobacter haemolyticus ATCC
19194]
Length = 438
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 85/325 (26%), Positives = 151/325 (46%), Gaps = 11/325 (3%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
ET + ++++D +G +IAE+ PASLTK+M AYV ++ K IT
Sbjct: 27 SPETVEAQAWSIVDAQSGQIIAEHNSHVQRAPASLTKMMVAYVALKEIEAGKLRKEDVIT 86
Query: 82 IS--KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ N + S K+G +++D L LIV SAND A+ +AE + + +F+ MN
Sbjct: 87 ATSVVNTVMWDESQMYLKEGEQISVDQLLAGLIVMSANDAALTLAERISGSVPQFIIRMN 146
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ LG+ THF N G+ HY+TA D+ +L+ I T P+Y++Y ++ +
Sbjct: 147 QEAQALGMKDTHFSNPAGITMPDHYSTAADLGLLAQAIVTKTPEYLYYSKMPSFSYNQRF 206
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTR 252
+ TN A+ ADG+KTGFT A+G+N+ +A + + LI ++LG + R
Sbjct: 207 HRATNLALKMDSTADGLKTGFTKAAGYNLALTAERPTLNPHIDKRRLIVIVLGTPNAIKR 266
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN-YNTQMK 311
+V+ L+++ + D + I + + + E + Y+
Sbjct: 267 AEVANKLMNLAYAYTRDEEVIPKHQLIAELPVIRSTLKIFKVETQQPTIVTTSLYDQATP 326
Query: 312 EAKDKESHFID-FEKITLLKNKITK 335
++ + + KI +
Sbjct: 327 IDLNQFDPLTQRLQVVDENGVKIIE 351
>gi|167766432|ref|ZP_02438485.1| hypothetical protein CLOSS21_00937 [Clostridium sp. SS2/1]
gi|317498290|ref|ZP_07956589.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
5_1_63FAA]
gi|167711841|gb|EDS22420.1| hypothetical protein CLOSS21_00937 [Clostridium sp. SS2/1]
gi|291560872|emb|CBL39672.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SSC/2]
gi|316894499|gb|EFV16682.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
5_1_63FAA]
Length = 374
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 79/343 (23%), Positives = 134/343 (39%), Gaps = 30/343 (8%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++ + ++D +G ++ D PAS+TK++T V K
Sbjct: 35 VATAEKTTAKQPKIYGRSGIVIDAKSGKILYAKKVDDRHYPASITKILTTLVAIENNK-- 92
Query: 73 KAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L +T S A + K G + L + L ++++SAN+ AE
Sbjct: 93 --DLYDEVTFSSYAVNSIEPGSTHIGIKAGEKIPLIDVLNAIMLESANEACNGAAEHTAG 150
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM---- 185
T KKFV+ MN K LG + +HF+ +G+ HY TARDMA +S +
Sbjct: 151 TTKKFVELMNKKVKELGCTGSHFVTTNGLHDDDHYVTARDMAKISKAALENETFRYVACK 210
Query: 186 --HYFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+Y + GK+ N + + + G +G KTG+T +G +V A +GDQ L
Sbjct: 211 PNYYIAPTNKDKHGKELWNHHKMVKRTMFNYDGVEGGKTGYTTKAGGTLVTFAKRGDQEL 270
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN----------YIIKDFYQQNLSNEV 289
I V L A + + +L+ GF N Y + ++
Sbjct: 271 IVVDLCAHGYEL-YEDTIKMLNYGFNNYKTIAPFKTMNTVLKDDTYGFLKTGNELSPYKI 329
Query: 290 P--NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
P ++++ +K K +K D ++I +K
Sbjct: 330 PLKHLNDVTVMLEKNQSASKLTYKCKDNKYIISYDGKQIGSVK 372
>gi|228964541|ref|ZP_04125651.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228795141|gb|EEM42637.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 362
Score = 145 bits (364), Expect = 1e-32, Method: Composition-based stats.
Identities = 78/308 (25%), Positives = 118/308 (38%), Gaps = 13/308 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +G V+ P AS+TK+MTA + K K +++S
Sbjct: 17 NVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAESGKMK-----EMVSVSN 71
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K G + L++ + L+++S ND A IAES+ + FV MN +K
Sbjct: 72 EAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNEKAKK 131
Query: 145 LGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ THF N HG+ HY++A DMA+L+ + + F K + YP
Sbjct: 132 IGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGNES-FKKIFGTKTYKSDSWDYPWK 190
Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + A G KTGFT +G +V +A + LI V L A +L
Sbjct: 191 NKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSASSD---WDDHMNLF 247
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
GF K + + E N +K DK
Sbjct: 248 DKGFERFKQTKVLGQGAIAEINEKKYANHVYTKNSFSVPLTEEERKNVLLKVELDKSITL 307
Query: 321 IDFEKITL 328
D K+
Sbjct: 308 EDGVKVGK 315
>gi|322374184|ref|ZP_08048717.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
gi|321276889|gb|EFX53961.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
Length = 417
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 75/368 (20%), Positives = 143/368 (38%), Gaps = 39/368 (10%)
Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ ++++A+ ++ + P L+ +T + +++ TG V+ E P A
Sbjct: 3 MKKLQHIIMVALILIGLVTPALAQEQTDDFNVAAKHAIAIESTTGKVLYEKDATTPDGVA 62
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLL 111
S+TK++TAY+V+ + + K T + IS ++ T+ L
Sbjct: 63 SMTKILTAYMVYKAIDQGKITWDTEVNISDYPFNLTVDSEVSNVPLDSRKYTVKQLLDAT 122
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
++ SAN A+A+AE + TE FV M K G++ NA G+
Sbjct: 123 LISSANSAAIALAEKISGTESAFVDTMKAQLKKWGITDAKLYNASGLNNKYLGDNRYPGS 182
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA----VGTFLG 212
+ +A D+AI++ + D+PQ + + ++ K N+ G
Sbjct: 183 KPDDENTMSALDVAIIADHLIKDYPQVLDITKQGEVDFEGDNKLTTHNYMLEGQDNYREG 242
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNTRNKVSASLLSMGFYNKT 268
DG+KTG T +G + VA + + SLI V++ G D R + LL +
Sbjct: 243 VDGLKTGTTELAGASFVAHSNENGMSLITVVMNADNGGEDEAARFTATNDLLDYVVQHWK 302
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH-----FIDF 323
K ++N +S+ V + + ++ D +
Sbjct: 303 INKLNTKGQ--IVKKNDIKVADGVSKTVSAKLESDLTVVQKINSQNDTVNIKAKTVTAPI 360
Query: 324 EKITLLKN 331
+K +
Sbjct: 361 KKGDTIGT 368
>gi|229010872|ref|ZP_04168069.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
gi|229132375|ref|ZP_04261229.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
gi|228651081|gb|EEL07062.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
gi|228750546|gb|EEM00375.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
Length = 362
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 80/324 (24%), Positives = 129/324 (39%), Gaps = 16/324 (4%)
Query: 12 MLSNIFPFLSIAE---TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
M +++ P + A+ L++ +G V+ P AS+TK+MTA +
Sbjct: 1 MYASVMPIPAYAKMNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTALLAAES 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
K K+ +++S A S K G + L++ + L+++S ND A IAE++
Sbjct: 61 GKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+ + +
Sbjct: 116 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKI 174
Query: 188 FQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F K + YP N + A G KTGFT +G +V +A + LI V L
Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
A +L GF K + + E
Sbjct: 235 SASSD---WDDHMNLFDKGFERYKQAKVLGQGALAEINEKKYANHVYTKNSFSVPLTEEE 291
Query: 305 NYNTQMKEAKDKESHFIDFEKITL 328
+ +K DK + D KI
Sbjct: 292 RKSVLLKVELDKSAKLTDGVKIGK 315
>gi|302385106|ref|YP_003820928.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
saccharolyticum WM1]
gi|302195734|gb|ADL03305.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
saccharolyticum WM1]
Length = 479
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 70/356 (19%), Positives = 127/356 (35%), Gaps = 41/356 (11%)
Query: 2 RQFLVIIAMAMLSNIF-------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ V+I+ ++S +F P + ++D ++G V+ P+ PA
Sbjct: 3 RRIKVLISCILVSQLFLMTVYAKPDWPSDTGIQAEAGIVIDGDSGAVLFGQNIHAPYPPA 62
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNALKL 110
S+TK++TA +V L +T SK++ + G +++++ L
Sbjct: 63 SITKILTALIVLENAD-----LNDMVTFSKDSVYNVEEGSGNKLNVDTGDKLSVEDCLYS 117
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
LI+ S N A A+AE + + + FV MN K LG +HF N G+ Y TA DM
Sbjct: 118 LILHSCNQAANALAEHVAGSREAFVSMMNEKIKELGCVESHFDNPSGLNGDTQYVTAYDM 177
Query: 171 AILSWRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNW--------AVGTFLGADGM 216
A+++ ++ +G N + + A
Sbjct: 178 ALIAKAAYSNKKLVEISSAISRNIPPTANNPEGLTIYNEHRLVKTKDTKSEFYCPSAVAG 237
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY- 275
KTG+ +G +V Q + LI+VIL +LL GF +
Sbjct: 238 KTGYLIKAGNTLVTYGEQDGKRLISVILKG-SPKQYFIDGKALLEFGFSRFENFPVTGPE 296
Query: 276 -----IIKDFYQQNLSNEVPNISEE----VCTTQKEIINYNTQMKEAKDKESHFID 322
+ S + ++ E + + ++ + E
Sbjct: 297 TGYLSGEEPVEINGTSYKPSDLELEPDQVITLPKGAELSQADKTLVTDLPEGSPKG 352
>gi|229189650|ref|ZP_04316665.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
gi|228593914|gb|EEK51718.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
Length = 363
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 77/308 (25%), Positives = 118/308 (38%), Gaps = 13/308 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +G V+ P AS+TK+MTA + K K +++S
Sbjct: 18 NVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAESGKMK-----EMVSVSN 72
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K G + L++ + L+++S ND A IAES+ + FV MN +K
Sbjct: 73 EAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKE 132
Query: 145 LGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ THF N HG+ HY++A DMA+L+ + + F K + YP
Sbjct: 133 IGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWK 191
Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + A G KTGFT +G +V +A + LI V L A +L
Sbjct: 192 NKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSASSD---WDDHMNLF 248
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
GF K + + E N +K K +
Sbjct: 249 DKGFERFKQTKVLGQGAIAEINEKKYANHVYTKNSFSVPLTEEEKKNVVLKVELHKSTKL 308
Query: 321 IDFEKITL 328
D K+
Sbjct: 309 TDGVKVGK 316
>gi|220928795|ref|YP_002505704.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulolyticum H10]
gi|219999123|gb|ACL75724.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulolyticum H10]
Length = 440
Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats.
Identities = 87/366 (23%), Positives = 145/366 (39%), Gaps = 36/366 (9%)
Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ L +II++ +L + P S Y L+D TG V+ E+ PD W PAS TK
Sbjct: 1 MKKVLATLIISLTILLQVSPAFSANLDIDAASYILMDAKTGSVLYEHKPDLKWRPASTTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ TA V + M + ++ N G M+L++ L L++ SAN+
Sbjct: 61 IATALVALKEGNMDQVMTASNEAVTD--IGVGGMNIGIMPGEQMSLNDLLHALLIVSANE 118
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILS 174
A I+E+L + KF++ MN S +G T F N G+ H+++ARD+A+++
Sbjct: 119 TANIISENLYNDKSKFLEEMNKVSAEVGAKNTTFTNPSGIDEYEKDANHFSSARDLALIA 178
Query: 175 WRIKT---------DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-----------AD 214
M K N G
Sbjct: 179 KECLKYPVFREIVEQKQLNMLPPTNKHKTWNVLNTTNKLLGQSFKYGPETGDDRNQFTIT 238
Query: 215 GMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTR--NKVSASLLSMGFYNKTDRK 271
G+KTG T +G N ++SA + LI+V+LG ++ R + +LL+ G+ N + +
Sbjct: 239 GLKTGSTLRAGANFISSAVNKDGLELISVVLGVNNKPNRSVFDFTKTLLTAGYENYSRQM 298
Query: 272 KINYIIKDFYQ-----QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
I+ K N + E+ + N K+ + +K
Sbjct: 299 IIDRSTKIQEITVKDAANGDKVALITNGEIEALLPKDKNEWRLNKKINITQDIKAPVKKG 358
Query: 327 TLLKNK 332
T+L N
Sbjct: 359 TVLGNI 364
>gi|229199512|ref|ZP_04326173.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
gi|228583917|gb|EEK42074.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
Length = 425
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 85/374 (22%), Positives = 142/374 (37%), Gaps = 39/374 (10%)
Query: 1 MRQFLVIIAMAMLS--NIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ I+ + +LS ++ S AE + L D +TG ++ E PD AS
Sbjct: 3 MKKIFSILLVFLLSISSLGVTTSHAEEKIHIEAAAALLFDADTGKILHEQNPDELLAIAS 62
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KL+ Y V +KE K T + IS A E +N ++ L
Sbjct: 63 MSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELYHSI 122
Query: 116 ANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
A + +L + +EK F+ N +K LGL F+NA G+
Sbjct: 123 VIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 182
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA----VG 208
+ +ARDM ILS + T +P+ + + + K + N NW
Sbjct: 183 DPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 242
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ GADG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF N
Sbjct: 243 AYEGADGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFNNFE 302
Query: 269 DRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-----SHFI 321
+K Q +E+ K+ ++ DK
Sbjct: 303 KQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPYKIGTEVDKSLAEDGHLIA 362
Query: 322 DFEKITLLKNKITK 335
+K + + +
Sbjct: 363 PIKKDAKVGSITLE 376
>gi|255656482|ref|ZP_05401891.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
penicillin-binding protein) [Clostridium difficile
QCD-23m63]
gi|296450072|ref|ZP_06891834.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
difficile NAP08]
gi|296878453|ref|ZP_06902459.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
difficile NAP07]
gi|296261080|gb|EFH07913.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
difficile NAP08]
gi|296430537|gb|EFH16378.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
difficile NAP07]
Length = 429
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 82/353 (23%), Positives = 139/353 (39%), Gaps = 38/353 (10%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ S+ F + + L+D +G ++ + PAS TK+ TA +V
Sbjct: 15 FTSFLGSSNISFADNEPSIVAKHAVLMDYESGKILYNKDGNSKLYPASTTKVWTACLVLK 74
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+K L I I KN + S+ K+G + T+ L L+V SAND A +A +
Sbjct: 75 EVK----DLNQVIEI-KNLPQIDGSSMYLKEGESFTVKQLLNALLVHSANDAAFVLARYV 129
Query: 128 -CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD------ 180
+KF+ MN+ +K +G + THF N HG+ HYTTA DMA+++ +
Sbjct: 130 GGGDVQKFIDLMNSEAKKIGATNTHFNNPHGLPDPNHYTTAHDMALIAREAMNNDTFRQI 189
Query: 181 --------------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
+ K L K + DG+KTG+T A+G
Sbjct: 190 VKTKSLKFEATKAYPYERYFVNTNKFLTSHDKITYKGQPINIKYDIVDGIKTGYTDAAGK 249
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------DRKKINYIIKDF 280
+++SA++ + +I + + S L+ GF N K + F
Sbjct: 250 CLLSSAVKDGRRVIVAVFNS-TNADLYLDSRILIDYGFDNFKCATIVDKEKYTDTKKVLF 308
Query: 281 YQQNLSNEVPNISEEVCTTQKEII-NYNTQMKEAKDKESHFIDFEKITLLKNK 332
+Q+ P S + + E NY+T+ + K + +K +
Sbjct: 309 TKQHELVYEPKNSYRIFLEKNESQGNYDTKTELNK----IDLPIKKGAKVGTL 357
>gi|323483146|ref|ZP_08088538.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum
WAL-14163]
gi|323403566|gb|EGA95872.1| D-alanyl-D-alanine carboxypeptidase [Clostridium symbiosum
WAL-14163]
Length = 512
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 75/353 (21%), Positives = 133/353 (37%), Gaps = 39/353 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ + ++ ++ P + + ++D ++ VI
Sbjct: 33 MKKLMSLLLSIIMILAGPAMTSYAKPDWPADTGIQSEAGIVMDMDSKTVIFGQNIHVQKA 92
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNAL 108
PAS+TKL+TA VV L +T S +A + + + G MT+ + L
Sbjct: 93 PASITKLLTALVVIENA-----NLDDMVTFSDDAIHNVEEGAGNKNALEPGDKMTVKDCL 147
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+++ S+N A A+AE + + FV MN K LG +HF N G+ TT
Sbjct: 148 YHMLLTSSNQSANALAEHVAGSRDAFVAMMNEKVKELGCENSHFANPSGLNDDTQLTTVY 207
Query: 169 DMAILSWRIKTD-----------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
DMA++ + + G+ IK + T + A K
Sbjct: 208 DMALIGTAAYENPVLLEIGSAKSYRLPPTANNPDGVTIKMEHKMLTEGDPNYYQAAIAGK 267
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN--- 274
TGFT +G +V A + D+ LIAV + + T + + +LL GF + K
Sbjct: 268 TGFTSIAGQTLVTYASKDDRKLIAVTMKS-TEFTHYQDTKALLDFGFDRFKNIKIAENET 326
Query: 275 ---YIIKDFYQQNLSNEVPNISEE----VCTTQKEIINYNTQMKEAKDKESHF 320
+ + S E ++S + + + + + K E+H
Sbjct: 327 SYTTGDQPVELGDSSYEPSDLSIDPKAVITVPKDAQFSDTDKNVVTKLPENHP 379
>gi|228984648|ref|ZP_04144821.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228775042|gb|EEM23435.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 362
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 76/308 (24%), Positives = 120/308 (38%), Gaps = 13/308 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +G V+ P AS+TK+MTA + K K +++S
Sbjct: 17 NVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAESGKMK-----EMVSVSN 71
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K G + L++ + L+++S ND A IAE++ + + FV MN +K
Sbjct: 72 EAVRVEGSAIYLKPGQKVKLEDIVYGLMLRSGNDAAQVIAENVGGSIEGFVYLMNEKAKQ 131
Query: 145 LGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ THF N HG+ HY++A DMA+L+ + + F K + YP
Sbjct: 132 IGMKDTHFSNPHGLDGDGSHYSSAYDMALLTRYAMGN-ETFKKIFGTKTYKSDSWDYPWK 190
Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + A G KTGFT +G +V +A + + LI V L A +L
Sbjct: 191 NKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDELDLIVVTLSASSD---WDDHMNLF 247
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
GF + + E N +K DK +
Sbjct: 248 DKGFERFKQTNVVGQGALAEITEKKYANHVYTKNSFAVPLTEQERKNVVLKVELDKSAKL 307
Query: 321 IDFEKITL 328
D K+
Sbjct: 308 KDGVKVGK 315
>gi|163939383|ref|YP_001644267.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
gi|163861580|gb|ABY42639.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
Length = 374
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 80/324 (24%), Positives = 129/324 (39%), Gaps = 16/324 (4%)
Query: 12 MLSNIFPFLSIAE---TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
M +++ P + A+ L++ +G V+ P AS+TK+MTA +
Sbjct: 13 MYASVMPIPAYAKMNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTALLAAES 72
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
K K+ +++S A S K G + L++ + L+++S ND A IAE++
Sbjct: 73 GKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 127
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+ + +
Sbjct: 128 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKI 186
Query: 188 FQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F K + YP N + A G KTGFT +G +V +A + LI V L
Sbjct: 187 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 246
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
A +L GF K + + E
Sbjct: 247 SASSD---WDDHMNLFDKGFERYKQAKVLGQGALAEINEKKYANHVYTKNSFSVPLTEEE 303
Query: 305 NYNTQMKEAKDKESHFIDFEKITL 328
+ +K DK + D KI
Sbjct: 304 RKSVLLKVELDKSAKLTDGVKIGK 327
>gi|227892363|ref|ZP_04010168.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus
salivarius ATCC 11741]
gi|227865770|gb|EEJ73191.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus
salivarius ATCC 11741]
Length = 417
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 62/369 (16%), Positives = 145/369 (39%), Gaps = 39/369 (10%)
Query: 1 MRQFLVIIAMAMLSNI--------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
+++ + +++ + +D TG +I +
Sbjct: 5 LKKLGISFLTSLMVVTGIGQGFINADQTLPQLDLEAKSAIAVDAKTGQIIYAKDDKQTYP 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KL+TAY++ + + + T +T + ++ +N ++G + T+
Sbjct: 65 VASMSKLLTAYILLQAIHKGEITWETRVTPTATEVDISNNTELTNVPLQEGHSYTIRQLY 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------- 159
+ ++V SAN + I ++ T+ KF+ M T+K+LG++ +A+G+
Sbjct: 125 QAMLVGSANAATMLIGNAISGTQTKFIDKMRETAKSLGITDAKIYSANGLTAKYLGDEIY 184
Query: 160 -----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----KYPNTNWAVGTF 210
+ + RDMAI+S ++ ++P+ + ++ ++ NTN +
Sbjct: 185 PNTDENAENEFSVRDMAIISQKLIKEYPEILETTKLTMIDFNDNGEITTVNNTNELLQDD 244
Query: 211 LG--ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK- 267
DG+KTG + A+G+ ++ + +I VI GA D + R + +LL+ + N
Sbjct: 245 SNLEVDGLKTGTSDAAGYCFASTTNKDGHRIITVIAGAKDNDARFDQTKNLLNYIYNNYD 304
Query: 268 -----TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T++ I + +Q+ + + + + K
Sbjct: 305 YLAISTNQALRQDIKVKYGKQSSISTIIGNDLSLWVPKNTRAKALQIKLTPKS-SKIEAP 363
Query: 323 FEKITLLKN 331
++ + +
Sbjct: 364 IKQGETVGD 372
>gi|205373761|ref|ZP_03226563.1| penicilin binding protein (putative D-alanyl-D-alanine
carboxypeptidase) [Bacillus coahuilensis m4-4]
Length = 322
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/285 (21%), Positives = 119/285 (41%), Gaps = 8/285 (2%)
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT ++ +++ + + S+ A+ S + G MT++ LK + + SAND
Sbjct: 1 MTMILIMEAIEKGQINWEDKVRTSEYAASMGGSQIFLEPGEEMTVEEMLKGIAIGSANDA 60
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW---- 175
+VA+AE + +E+ FV+ MNN + L L T F N G+ H+++A DMA+++
Sbjct: 61 SVAMAEFIAGSEEAFVEMMNNKVEELKLKDTVFQNPTGLPADNHFSSAYDMAMMAKELLK 120
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
K + ++ + NTN V + G DG+KTG+T + + + A+A G
Sbjct: 121 YEKITQFTGTYEDYLRENTDEKFWLVNTNKLVRFYDGVDGLKTGYTSEAKYCLTATAKVG 180
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPN 291
+ ++AV+ G RN + +L F + + + +
Sbjct: 181 NMRVVAVVFGEPTPKERNAEVSKMLDYAFSQFMTHPMYEKGKEISEAKVSKGKENTVIGM 240
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+E + K+ ++ + +K + +K
Sbjct: 241 TNESISLLTKKGEKLEGIEEKIVMNKELKAPIKKGDDIGTITIQK 285
>gi|257884114|ref|ZP_05663767.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
1,231,501]
gi|257819952|gb|EEV47100.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecium
1,231,501]
Length = 435
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 64/355 (18%), Positives = 120/355 (33%), Gaps = 32/355 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L + +D +G ++ + AS+TK++ Y+V +
Sbjct: 20 ASFLPAVAVQAEDTFKVNAKAAFAVDAQSGKILYNQDGEKTMGIASITKIIGLYIVLDQV 79
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
KE K ++IS A + +K L + A A +L +
Sbjct: 80 KEGKLSWDDKVSISDYAENLSITPDLSNVPLHKENTYTVKELFDSAIIQSANASMVALAE 139
Query: 130 T----EKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMA 171
E KF + M K+ G+ +NA G+ + +A+D+A
Sbjct: 140 KISGSEAKFTERMKEQLKDWGIKDATIVNASGLNNSYLGENRPEDTGENDENQMSAQDVA 199
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTC 222
I++ + DFP+ + N NW + F G DG+KTG T
Sbjct: 200 IVARHLILDFPEILDVSSTTTQMFGENTQSPVEMVNWNWMLPGFVNYKEGVDGLKTGTTE 259
Query: 223 ASGFNIVASAIQGDQSLIAVILGALD----RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G V + + DQ +I V+L A + R + L+ + N ++++
Sbjct: 260 LAGACFVGTITKNDQRIITVVLNADGHAENPSARFNETDRLMDYCYDNWSEKELGKANAS 319
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ + V K + + K + +K + N+I
Sbjct: 320 IPSLKTID-VKDGKESTVPVVLKSPVKVWVRNDMDTGKLTITSTLDKKQVTDNEI 373
>gi|290581230|ref|YP_003485622.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus mutans
NN2025]
gi|254998129|dbj|BAH88730.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus mutans
NN2025]
Length = 413
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 71/368 (19%), Positives = 144/368 (39%), Gaps = 33/368 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ + ++ + + F + + ++ NTG ++ E D AS+TK+
Sbjct: 1 MKKIVCLLFILISLIGFGVKAEENFDVSAKHAIAVEANTGKILYEKDADTTAGIASITKM 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ +K ++ + IS + +++ T+ ++ ++ SA
Sbjct: 61 LTVYMVYKEIKSGDLTWSSKVKISDYPYSLTKDYSASNVPMDAREYTVKELVEASMIASA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HG 162
N A+A+AE + TE KFV M + G++ +NA G+
Sbjct: 121 NSAAIALAEKVGGTEPKFVDMMKKQLQEWGITDAKLVNASGLNNKTLGDHIYPDSSSEDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +ARD+AI++ + +FPQ + + + G K N+ + G DG+KT
Sbjct: 181 NMMSARDVAIVAHHLIKEFPQVLKITEKTNSDFSGNKMETYNYMLPNMPYAREGVDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILG-----ALDRNTRNKVSASLLSMGFYNKTDRKKI 273
G T +G VA++ + LI+V+L + D R + + +LL+ I
Sbjct: 241 GTTELAGACFVATSKENGMRLISVVLNADKSDSDDDAARFQATNNLLNYVNNTYEPITLI 300
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + Q ++ + + A K + +K
Sbjct: 301 HKGQTYQGSKVKVIDGKRTTVPAVAKKNFTVIQNKLSHKKNTVSIASKKNGYTAVIKKGQ 360
Query: 328 LLKNKITK 335
L+ K
Sbjct: 361 LVAKATFK 368
>gi|296877427|ref|ZP_06901464.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis ATCC 15912]
gi|296431588|gb|EFH17398.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis ATCC 15912]
Length = 413
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 64/364 (17%), Positives = 133/364 (36%), Gaps = 32/364 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++F + + +L P + + ++ +TG ++ E D L
Sbjct: 1 MKKFFLSFLTFILLLCSLPPQRIFANEPDLPVQSAIAVEADTGKILYEKDSDKKREVGGL 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIV 113
+ L+T Y++F + +KK L PI +S+ A ++ + + + + T+D L L+V
Sbjct: 61 STLLTTYLIFEAIHDKKLSLKDPIKLSEEALALNDIKGAGTLPIEANQYTVDQLLIALLV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-----------G 162
+++ A A+AE + +EK FV+ M G+ + H +NA G+
Sbjct: 121 GNSSTAAFALAEKVGGSEKSFVEKMKQKLAEWGIQSPHLINATGLNTQTISGDPDGKEDE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+A+++ + DFP+ Y + N N + G DG++
Sbjct: 181 NQLSAYDIAVIAKHLLQDFPEVTKYTSKPTALFSNTQIENPNLMLEGMPNYRSGVDGLRV 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKIN 274
+ G AS Q +I V+LG D R ++SL++ +
Sbjct: 241 SNSTKGGITFAASTTQNGIHMITVVLGVEAVDGDPYARFVATSSLMNYVVRTFVSSIVVK 300
Query: 275 ------YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ ++ K+ +++ + +
Sbjct: 301 RGDTYGKSKVAITDGKFESVSAVAKKDFYVVVKQGNQTEPKIQFKSSQNQFKAPVKSGDD 360
Query: 329 LKNK 332
+
Sbjct: 361 VGIL 364
>gi|253580937|ref|ZP_04858199.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847779|gb|EES75747.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 411
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 71/265 (26%), Positives = 113/265 (42%), Gaps = 20/265 (7%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ L+D T ++ PAS+TK+MTA + + + I
Sbjct: 60 PTGPNIEGQSAVLMDAVTDTILYSKNAKDKLYPASITKIMTALLACEY-----LNMDDTI 114
Query: 81 TISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
T+S+ A+ S+ + G T++ AL L+++SAN++A+A+AE + KKFV+
Sbjct: 115 TMSQEAAYGIEAGSSSIYAETGEVFTVEQALMALMLESANEMALALAEKTSGSVKKFVEL 174
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----------PQYMHY 187
MN + LG THF N +G+ HYTTA DM ++ + +
Sbjct: 175 MNQRAAQLGCKNTHFNNPNGLPDETHYTTAGDMMKIAKAAWYNPRFRKFVTTQVYEIPPT 234
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ + + G G KTG+T A+G +V A +G+ LIAV+L
Sbjct: 235 NKQSETRYLLNHHKMMPGQSYAYDGVLGGKTGYTDAAGSTLVTYAKRGNSILIAVVLN-- 292
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKK 272
N + SLL GF N
Sbjct: 293 STNGAFPDTTSLLDYGFDNFEKVDL 317
>gi|298245363|ref|ZP_06969169.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
gi|297552844|gb|EFH86709.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
Length = 633
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 74/296 (25%), Positives = 102/296 (34%), Gaps = 21/296 (7%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+LD +TG + P S TKLMTAY+ ITI+
Sbjct: 284 PPVYANAAYVLDADTGKTLYAQNPLMHLPMLSTTKLMTAYLA-----AHMGKPDQRITIT 338
Query: 84 K-------NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
N S KKG T TL L L++ S ND A+ IA++L FV
Sbjct: 339 DAIDRDLQNDLSADSSLMGVKKGETYTLKELLYGLMLVSGNDAAIVIADALSGNVPAFVA 398
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-----KTDFPQYMHYFQIK 191
MN L TH+MN HG++ HY++A D+A + + HY
Sbjct: 399 KMNQQLGTWNLHNTHYMNPHGLIVPNHYSSAHDLAYIGRYSLSDPLIHEVSATQHYLIPG 458
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ N N + + G DG K G+ FN V S ++ LI V L D
Sbjct: 459 NGDHAAHDMYNGNQFLWWYPGVDGGKPGWDGEKNFNQVISCVRNQHHLIGVTLHTSD--- 515
Query: 252 RNKVSASLLSMGFYNKTDRKK-INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
L++ GF I + N +E Y
Sbjct: 516 WWTDMRDLMNWGFNTYDWISPAIEDLKHPIPYDTDWNYFTKDKKENTIPMANGGRY 571
>gi|229058203|ref|ZP_04196591.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
gi|228720067|gb|EEL71651.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
Length = 362
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 80/324 (24%), Positives = 128/324 (39%), Gaps = 16/324 (4%)
Query: 12 MLSNIFPFLSIAE---TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
M +++ P + A+ L++ +G V+ P AS+TK+MTA +
Sbjct: 1 MYASVIPIPAYAKMNGGVSARNAVLMEQQSGRVLYGKLEHEPQKIASITKIMTALLAAES 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
K K+ +++S A S K G + L++ + L+++S ND A IAE++
Sbjct: 61 GKMKEL-----VSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAENVG 115
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+ + +
Sbjct: 116 GSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKI 174
Query: 188 FQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F K + YP N + A G KTGFT +G +V +A + LI V L
Sbjct: 175 FGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTL 234
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
A +L GF K + + E
Sbjct: 235 SASSD---WDDHMNLFDKGFERYKQAKVLGQGAIAEINEKKYANHVYTKNSFSVPLTEEE 291
Query: 305 NYNTQMKEAKDKESHFIDFEKITL 328
+ +K DK D KI
Sbjct: 292 RKSVLLKVELDKSEKLTDGVKIGK 315
>gi|126700114|ref|YP_001089011.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
penicillin-binding protein) [Clostridium difficile 630]
gi|255101659|ref|ZP_05330636.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
penicillin-binding protein) [Clostridium difficile
QCD-63q42]
gi|255307527|ref|ZP_05351698.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
penicillin-binding protein) [Clostridium difficile ATCC
43255]
gi|115251551|emb|CAJ69384.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
penicillin-binding protein) [Clostridium difficile]
Length = 429
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 81/353 (22%), Positives = 137/353 (38%), Gaps = 38/353 (10%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ S+ F + L+D +G ++ + PAS TK+ TA +V
Sbjct: 15 FTSFLGSSNISFADNEPAIVAKHAVLMDYESGKILYNKDGNSKLYPASTTKVWTACLVLK 74
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+K L I I K+ + S+ K G + T+ L L+V SAND A +A +
Sbjct: 75 EVK----DLNQVIEI-KDLPQIDGSSMYLKNGESFTVKQLLDALLVHSANDAAFVLARYV 129
Query: 128 -CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD------ 180
+KF+ MN+ +K +G + THF N HG+ HYTTA DMA+++ +
Sbjct: 130 GGGNVQKFIDLMNSEAKKIGATNTHFNNPHGLPDPNHYTTAHDMALIAREAMNNDTFRQI 189
Query: 181 --------------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
+ K L K + DG+KTG+T A+G
Sbjct: 190 VKTKSLKFEATKAYPYERYFVNTNKFLTSHDKITYKGQPINIKYDIVDGIKTGYTDAAGK 249
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------DRKKINYIIKDF 280
+++SA++ + +I + + S L+ GF N K + F
Sbjct: 250 CLLSSAVKDGRRVIVAVFNS-TNADLYLDSRILIDYGFDNFKCATIVDKEKYTDTKKVLF 308
Query: 281 YQQNLSNEVPNISEEVCTTQKEII-NYNTQMKEAKDKESHFIDFEKITLLKNK 332
+Q+ P S + + E NY+T+ + K + +K +
Sbjct: 309 TKQHELIYEPKNSYRIFLEKDESQGNYDTKTELNK----IDLPIKKGAKVGTL 357
>gi|319407217|emb|CBI80856.1| Penicillin-binding protein [Bartonella sp. 1-1C]
Length = 390
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 73/337 (21%), Positives = 130/337 (38%), Gaps = 11/337 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ + +L + +LD NT ++ E D + PASL KLMTA V
Sbjct: 7 VLFSLIWILIFNEQGQTKKFQTSALQLLILDDNTDTILFEKQSDVVFFPASLAKLMTAEV 66
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDI 119
VF LK+ T +S+NA + K+ + +++ + L L++ + ND
Sbjct: 67 VFYQLKKGLLNKTQKFKVSENAWRKGGAPSGATTMFAKEKTEISVFDLLHGLVIVNGNDA 126
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ +AE + + F + MN +K LGL +HF+NA G+ + G +TT RD+ L I
Sbjct: 127 AITLAEGIAGNDANFAKLMNKRAKTLGLLNSHFVNATGLPEKGQFTTLRDIITLVRHIAR 186
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNW--AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
++P Y ++ N N + +G+ G++ GF+ V SA Q
Sbjct: 187 EYPDYYALYREPNFTWNKITQRNKNSLIFQENDVKIEGLGFGYSEEVGFSTVISAYNNQQ 246
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNIS 293
+ I G ++ R K +L + Y ++ +
Sbjct: 247 RIFLAINGLQNKQERTKEVKRILEWAMTAFDLKTVFTRDETVGYASVYGGAKNSVPLIVK 306
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
E + + N+N + +
Sbjct: 307 EPINFMLLKQKNFNDVNAIIQYHGPLKAPVTLGQKVG 343
>gi|323466012|gb|ADX69699.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus helveticus H10]
Length = 457
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 68/373 (18%), Positives = 139/373 (37%), Gaps = 46/373 (12%)
Query: 4 FLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
+ +I++ F A+ + +D+N+G V+ D A
Sbjct: 40 LVALISLVSCGATFSAPVKADVANYQTDQVKLNVKSAIAIDSNSGQVLYAKNADKTLPIA 99
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPIT----ISKNASEYPPSNSTFKKGSTMTLDNALKL 110
S+TKLMT Y+ + +K +K + I K A+ SN K G + T+ +
Sbjct: 100 SMTKLMTVYLTLNAIKNQKLAWDQKVKPTASIVKVANNAEYSNVPLKMGHSYTIKQLYQA 159
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-------- 162
+++SAN A+ + +++ ++K F+ M + K G+ A G+
Sbjct: 160 TLIESANGAAMLLGQTIAGSQKAFIDQMRSQVKKWGIKDAKIYTACGLPNGNVGKDAYPG 219
Query: 163 ------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF------ 210
+ +A+DMAI+ + DFP+ + ++ L+ K + +
Sbjct: 220 VNKNAENSMSAKDMAIVGQNLIQDFPEVLDTTKLAHLDFKDQGHTTKMANFNWMLKGLSQ 279
Query: 211 ----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSM 262
DG+KTG T A+G + + LI V++GA R + L++
Sbjct: 280 YDQAYPVDGLKTGTTDAAGACFIGTVNHAGARLITVVMGARHKDGTDPARFMQTKKLMNY 339
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN----TQMKEAKDKES 318
F N + +N+ + + +++ ++ + +K++
Sbjct: 340 VFTKYRPVT-FNAGSQMAGVKNIKVTDGDNATTNLGLKEKTTIWDPADGKTLVAKLNKQT 398
Query: 319 HFIDFEKITLLKN 331
K ++ N
Sbjct: 399 IEAPITKGQVVGN 411
>gi|254976092|ref|ZP_05272564.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
penicillin-binding protein) [Clostridium difficile
QCD-66c26]
gi|255093481|ref|ZP_05322959.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
penicillin-binding protein) [Clostridium difficile CIP
107932]
gi|255315225|ref|ZP_05356808.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
penicillin-binding protein) [Clostridium difficile
QCD-76w55]
gi|255517894|ref|ZP_05385570.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
penicillin-binding protein) [Clostridium difficile
QCD-97b34]
gi|255651009|ref|ZP_05397911.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
penicillin-binding protein) [Clostridium difficile
QCD-37x79]
gi|260684078|ref|YP_003215363.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile CD196]
gi|260687737|ref|YP_003218871.1| D-alanyl-D-alanine carboxypeptidase [Clostridium difficile R20291]
gi|260210241|emb|CBA64492.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
penicillin-binding protein) [Clostridium difficile
CD196]
gi|260213754|emb|CBE05676.1| D-alanyl-D-alanine carboxypeptidase (putative sporulation-specific
penicillin-binding protein) [Clostridium difficile
R20291]
Length = 429
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 81/353 (22%), Positives = 137/353 (38%), Gaps = 38/353 (10%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ S+ F + L+D +G ++ + PAS TK+ TA +V
Sbjct: 15 FTSFLGSSNISFADNEPAIVAKHAVLMDYESGKILYNKDGNSKLYPASTTKVWTACLVLK 74
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+K L I I K+ + S+ K G + T+ L L+V SAND A +A +
Sbjct: 75 EVK----DLNQVIEI-KDLPQIDGSSMYLKNGESFTVKQLLDALLVHSANDAAFVLARYV 129
Query: 128 -CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD------ 180
+KF+ MN+ +K +G + THF N HG+ HYTTA DMA+++ +
Sbjct: 130 GGGNVQKFIDLMNSEAKKIGATNTHFNNPHGLPDPNHYTTAHDMALIAREAMNNDTFRQI 189
Query: 181 --------------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
+ K L K + DG+KTG+T A+G
Sbjct: 190 VKTKSLKFEATKAYPYERYFVNTNKFLTSHDKITYKGQPINIKYDIVDGIKTGYTDAAGK 249
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------DRKKINYIIKDF 280
+++SA++ + +I + + S L+ GF N K + F
Sbjct: 250 CLLSSAVKDGRRVIVAVFNS-TNADLYLDSRILIDYGFDNFKCATIVDKEKYTDTKKVLF 308
Query: 281 YQQNLSNEVPNISEEVCTTQKEII-NYNTQMKEAKDKESHFIDFEKITLLKNK 332
+Q+ P S + + E NY+T+ + K + +K +
Sbjct: 309 TKQHELIYEPKNSYRIFLEKDESQGNYDTKTELNK----IDLPIKKGAKVGTL 357
>gi|302024467|ref|ZP_07249678.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 05HAS68]
Length = 402
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 62/357 (17%), Positives = 136/357 (38%), Gaps = 31/357 (8%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
M P L+ + + ++ ++G ++ E + + AS++K ++ Y+V+ L
Sbjct: 1 MLYFFTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASISKTLSIYLVYEAL 60
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKG---STMTLDNALKLLIVKSANDIAVAIAES 126
+ + L T + IS + + ++ + L ++ S+N +A+AE
Sbjct: 61 AKGEITLDTMVDISDYPYSLTSNTELSNVNLDARSYSVRDLLNASLITSSNSAIIALAEK 120
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAI 172
+ +E FV M + G++ T +N G+ + +A D+AI
Sbjct: 121 IAGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDVAI 180
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNI 228
++ R+ D+PQ + + + G Y +TN + G DG+KTG + ++G +
Sbjct: 181 IARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSF 240
Query: 229 VASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIK------ 278
+A+ Q +I V+L A R + L++ + N + +
Sbjct: 241 LATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSLVTLVKKGEAFEDSKI 300
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ Q++ + D + + TL+ K
Sbjct: 301 KVFNGEKETSPVVAAADLTVVQRKQTDNVPTATFTTDIKEIDAPLKAGTLVSKLQLK 357
>gi|291539057|emb|CBL12168.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4]
Length = 423
Score = 144 bits (362), Expect = 2e-32, Method: Composition-based stats.
Identities = 69/346 (19%), Positives = 129/346 (37%), Gaps = 34/346 (9%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ L+D ++G ++ E AS TK++T + L
Sbjct: 47 TEKPDQNSLYAKAAVLMDADSGSILYEKNGHQAMANASTTKILTCIIALENCD-----LD 101
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ +T+S A+ P + ++G L + L L+++S ND AVAIAE + T F +
Sbjct: 102 SEVTVSTLAASQPKVHLGMREGQKFYLKDLLYGLMLESYNDCAVAIAEHIAGTTGDFAKL 161
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN+ ++ +G ++F+ +G+ H+TTA D++++ + I
Sbjct: 162 MNDKAEEIGCEDSYFITPNGLDAKNENGFHHTTAADLSLIMRYCIKTSEMAEQFLTITRE 221
Query: 194 EI---------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
N N + GA KTGFT +G+ V + + D++ I +L
Sbjct: 222 GQYQFSDIDGKNSYTCCNHNAFLQMMDGALSGKTGFTGNAGYCYVGALKRDDRTFIVALL 281
Query: 245 GALDRNT---RNKVSASLLSMG---FYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
N + + L+ G F + + + Q + + I EEV T
Sbjct: 282 ACGWPNNKTYKWADTKKLMQYGISRFRKISLDEIELDAGEYAPVQVVDGQGTKIGEEVTT 341
Query: 299 -TQKEIINYNTQMKEAKDKESHF---------IDFEKITLLKNKIT 334
+ + N ++ KD+E H + +
Sbjct: 342 ELEVAPVKENVELLIEKDQEVHIEYQLSRKLYAPVTEGDFIGEITY 387
>gi|92110365|emb|CAJ87634.1| putative penicillin binding protein 6b [Escherichia coli]
Length = 335
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 76/286 (26%), Positives = 128/286 (44%), Gaps = 11/286 (3%)
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLL 111
KLMT YVV + + +T+ ++A K+G +++ + + L
Sbjct: 13 KLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGL 72
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
IV S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A
Sbjct: 73 IVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLA 132
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVA 230
+LS I P++ H + K L G N N + DG+KTG T +GFN++A
Sbjct: 133 VLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIA 192
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLS 286
SA+ G + LIAV++GA R + + LL G N T + ++ K + +
Sbjct: 193 SAVDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKE 252
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
N +E + + + K D + +
Sbjct: 253 NIALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 298
>gi|206975818|ref|ZP_03236729.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
H3081.97]
gi|217962879|ref|YP_002341457.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
AH187]
gi|206745912|gb|EDZ57308.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
H3081.97]
gi|217067221|gb|ACJ81471.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
AH187]
Length = 423
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 83/374 (22%), Positives = 141/374 (37%), Gaps = 39/374 (10%)
Query: 1 MRQFLVIIAMAMLS--NIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ I+ + +LS ++ S AE + L D +TG ++ E PD AS
Sbjct: 1 MKKIFSILLVFLLSISSLVVTTSHAEEKIHIEAAAALLFDADTGKILHEQNPDELLAIAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KL+ Y V +KE K T + +S A E +N ++ L
Sbjct: 61 MSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSNVPFEKGRQYTVRELYHSI 120
Query: 116 ANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
A + +L + +EK F+ N +K LGL F+NA G+
Sbjct: 121 VIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 180
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA----VG 208
+ +ARDM ILS + T +P+ + + + K + N NW
Sbjct: 181 DPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 240
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF N
Sbjct: 241 AYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFNNFE 300
Query: 269 DRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-----SHFI 321
+K Q +E+ K+ ++ DK
Sbjct: 301 KQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPYKIGTEVDKSLAEDGHLIA 360
Query: 322 DFEKITLLKNKITK 335
+K + + +
Sbjct: 361 PIKKDAKVGSITLE 374
>gi|225552024|ref|ZP_03772964.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia sp. SV1]
gi|225371022|gb|EEH00452.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia sp. SV1]
Length = 405
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 81/352 (23%), Positives = 135/352 (38%), Gaps = 31/352 (8%)
Query: 3 QFLVIIAMAM------LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ L+ + + L + + L+D +T ++ P+ + PASL
Sbjct: 9 KLLLTLFLIFSPFCYNLFAVNLAEINKLSEYAKSIVLMDFDTKRILYSKKPNLVFPPASL 68
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN----STFKKGSTMTLDNALKLLI 112
TK++T Y +++ L + + IS +AS Y +KG + + LK L
Sbjct: 69 TKIVTIYTALIEAEKRNIKLKSIVPISDSASYYNAPPNSSLMFLEKGQIVNFEEILKGLS 128
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V S ND ++AIAE + FV MN NLGL HF+ G + TA DMA
Sbjct: 129 VSSGNDSSIAIAEFVVGNLNSFVNLMNINVLNLGLFNMHFVEPSG-YSSENKITALDMAF 187
Query: 173 LSWRIKTDFPQYMHYFQIKGL--------------EIKGKKYPNTNWAVGTFLGADGMKT 218
F ++ +K + K N N + + +DG+KT
Sbjct: 188 FVKSYIEKFKFMLNIHSLKYFIYPKSKNLGTALSSKFLNLKQRNANLLIYDYPYSDGIKT 247
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILG------ALDRNTRNKVSASLLSMGFYNKTDRKK 272
G+ SG N+VA+A +G++ LIAV+LG R+ ++ +L GF +
Sbjct: 248 GYIKESGLNLVATAKKGERRLIAVVLGVEKGINGFGEKMRSSIAKNLFEYGFNEYSKFPL 307
Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
I + + Y E + + DK + +
Sbjct: 308 IVKLKEKVYNGTADTVALFSKEPFYYILTKDEFDKINISYTVDKLVAPLSGD 359
>gi|293375502|ref|ZP_06621781.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter
sanguinis PC909]
gi|325844936|ref|ZP_08168301.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
gi|292645902|gb|EFF63933.1| putative D-alanyl-D-alanine carboxypeptidase [Turicibacter
sanguinis PC909]
gi|325488986|gb|EGC91375.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
Length = 368
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 80/316 (25%), Positives = 133/316 (42%), Gaps = 17/316 (5%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ A L++ TG V+ E PD AS+TK++T+ V + L
Sbjct: 23 QTANAMGISSTCGILMEQTTGRVLFEKCPDEQMYIASITKILTSIVAIENGQ-----LDE 77
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S NA+ S+ G M L + + L+++S ND A+ IAE++ E FV+ M
Sbjct: 78 WVEVSDNATRQVGSSLYLALGDQMKLIDVIYGLMLRSGNDGAMVIAEAVGGDEAGFVKMM 137
Query: 139 NNTSKNLGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQY----MHYFQIKGL 193
N +K +G+ + F N G+ + + +TARDMAIL + +
Sbjct: 138 NEKAKEIGMKNSIFQNPSGLDETTYNLSTARDMAILMQYAMNNPIFREVTGTETHKATSK 197
Query: 194 EIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ N + G + A G KTGFT + +V SA + D L+ V L A D
Sbjct: 198 NGTPYVWHNKHKLVTGYYEYAIGGKTGFTERARRTLVTSARKDDLELVVVTLKAGDD--- 254
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE--IINYNTQM 310
SL + GF N +K I + + S E + + V K+ + T++
Sbjct: 255 WNDHMSLFNYGFDNYELKKVIEAGQL-YGEDLNSTEKLYVKDTVYLAVKKDGSESVTTEL 313
Query: 311 KEAKDKESHFIDFEKI 326
+ ++ + KI
Sbjct: 314 VLYESPKTDEVGTLKI 329
>gi|291563060|emb|CBL41876.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SS3/4]
Length = 461
Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats.
Identities = 69/337 (20%), Positives = 118/337 (35%), Gaps = 34/337 (10%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ LLD +TG ++ AS TK+MT + L T +
Sbjct: 91 TDPLNLNAHAAVLLDGDTGRILYGKNEKKVLPMASTTKIMTCILALENS-----GLDTEV 145
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
IS A+ P KG L++ L L+++S ND AVAIAE++ + + F MN
Sbjct: 146 EISDRAASMPEVKLHAGKGEKYRLEDLLYSLMLESHNDTAVAIAEAVGGSVENFADMMNG 205
Query: 141 TSKNLGLSATHFMNAHGVVQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
+ LG T+F+ +G+ H TTA D+A + + P + I
Sbjct: 206 KAAELGCDDTYFLTPNGLDAEDKESGKIHSTTAADLARILRYCISLSPAKEEFLAITRAP 265
Query: 195 ---------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ N N + + GA KTGFT +G+ V + + ++ IA +L
Sbjct: 266 SHAFSDLSGTRSFSCVNHNALLTSMEGAVSGKTGFTGKAGYCYVGAVKKDEKLFIAALLD 325
Query: 246 ALDRNTR---NKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNI------- 292
R + L++ G N ++ + +N +
Sbjct: 326 CGWPPHRTYKWQDMRKLVTYGDKNFEYKEIEKTGLGEETAVLVENGVESRVKVEIGTEHA 385
Query: 293 -SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + K AK + + +
Sbjct: 386 DRNSLRVLLGNDEKVQVRTKIAKSLHAPVREGTPVGQ 422
>gi|154483906|ref|ZP_02026354.1| hypothetical protein EUBVEN_01611 [Eubacterium ventriosum ATCC
27560]
gi|149735397|gb|EDM51283.1| hypothetical protein EUBVEN_01611 [Eubacterium ventriosum ATCC
27560]
Length = 494
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 78/352 (22%), Positives = 142/352 (40%), Gaps = 33/352 (9%)
Query: 1 MRQFL--VIIAMAMLSNIF---------------PFLSIAETNKLPYYTLLDTNTGHVIA 43
M++ + ++I + ++S+ + L++ +TG V+
Sbjct: 12 MKKIISKILIVILLISSCIGTINVEPVTVNAATKTNWPKGPSIYGQTGVLIEASTGTVLY 71
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
+ + PAS+TK+MTA + K + + T + ++ +Y +N G MT
Sbjct: 72 DKKCNKKMYPASITKIMTALLTIENCKMDE--MVTFSDATIHSIQYGDANMGCSVGEKMT 129
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ + L L+++SAN++A A+ E + + K F + MN +K G THF NA+G+ H
Sbjct: 130 VKDCLYALMLQSANEVATALGEHIAGSTKNFAEMMNKRAKEAGALNTHFANANGLHDPNH 189
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN------------TNWAVGTFL 211
Y TA DMA+++ + + + IK + +
Sbjct: 190 YVTAYDMAMITR-AASKYSVFNDIVNTTTYTIKHNNKRKTDATAIQRHKMVWPTSGYYYD 248
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
G G KTGFT SG +V A + +LIAV+L + N K + LL GF N +
Sbjct: 249 GIIGGKTGFTDQSGTTLVTYAKRNGMTLIAVVLHSNGTNV-YKDTKELLDYGFNNFGLQN 307
Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323
N + ++ + P + + N + + + F
Sbjct: 308 VSNNDQRFDSDNKVTLQSPFCNTTDSIYIDKTSNIVLPKTAKFSQLTSDVKF 359
>gi|319651403|ref|ZP_08005532.1| DacB protein [Bacillus sp. 2_A_57_CT2]
gi|317396934|gb|EFV77643.1| DacB protein [Bacillus sp. 2_A_57_CT2]
Length = 374
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 65/323 (20%), Positives = 123/323 (38%), Gaps = 16/323 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++A A++ P + A + L++ ++G ++ + + AS+TK+MTA +
Sbjct: 1 MVLATALMMMNIPQKAEASVSVSARSAILMEQDSGRILYQKDANEVRRIASITKIMTAIL 60
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
K + + +S A S+ K G + L++ + L+++S ND AVAIA
Sbjct: 61 AIESGK-----MDDMVKVSDRAVRAEGSSIYLKAGEKIKLEDLVYGLMLRSGNDSAVAIA 115
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + + + F MN ++ +G+ THF N HG+ H + + L R + Y
Sbjct: 116 EHVGGSLEGFGFLMNKKAEEIGMKNTHFANPHGLDDHEDHYSTAYDMALLTRYAMNNETY 175
Query: 185 MHYFQIKGLEIKGKK------YPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQ 237
K + N N + + G KTG+T + +V +A +G
Sbjct: 176 QKIAGTKVHRAPNPNESWDRVWKNKNRLLTELYEYCTGGKTGYTKRAKRTLVTTASKGSL 235
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
+LIAV L D ++ F + + I D + +
Sbjct: 236 NLIAVTLNGPDD---WNDHINMYETAFKTYDIVEVLPEGIIDDIDEEYYKGKVYLKHPYH 292
Query: 298 TTQKEIINYNTQMKEAKDKESHF 320
+ ++ K
Sbjct: 293 YPVLKGEKDKFKINIELQKPETE 315
>gi|312862634|ref|ZP_07722875.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
vestibularis F0396]
gi|311101894|gb|EFQ60096.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
vestibularis F0396]
Length = 417
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 77/366 (21%), Positives = 144/366 (39%), Gaps = 35/366 (9%)
Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ +++I + ++ P L+ +T + ++T TG V+ E P A
Sbjct: 3 MKKLQHIIMITLILIGLATPALAQEQTDDFNVAAKHAIAIETTTGKVLYEKDATTPDGVA 62
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLL 111
S+TK++TAY+V+ + + K T + IS ++ T+ L
Sbjct: 63 SMTKILTAYMVYKAVDQGKINWDTEVDISDYPFNLTVDSEVSNIPLDSRKYTVKQLLDAT 122
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
++ SAN A+A+AE + TE FV M K G++ NA G+
Sbjct: 123 LISSANSAAIALAEKISGTESAFVDTMTAQLKEWGITDAKLFNASGLNNKYLGDNRYPGS 182
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA----VGTFLG 212
+ +A D+AI++ + D+PQ + + + K N+ G
Sbjct: 183 KPDDENTMSALDVAIIADHLIKDYPQVLEITKQTETDFEGDNKLTTHNYMLEGQDNYREG 242
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNTRNKVSASLLSMGFYNKT 268
DG+KTG T +G + VA + + SLI +++ G D R + LL N
Sbjct: 243 VDGLKTGTTELAGASFVAHSNEHGMSLITIVMNADNGGEDEAARFTATNELLDYVTQNWE 302
Query: 269 DRKKINYI--IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK-ESHFIDFEK 325
+ +K + + IS ++ + + N++ K K ++ +K
Sbjct: 303 IKTLNTKGQIVKKNDIKVADRDSQTISAKLESDLIVVQKINSKNDAVKIKAKTITAPIKK 362
Query: 326 ITLLKN 331
+
Sbjct: 363 GNTIGT 368
>gi|24378762|ref|NP_720717.1| putative D-alanyl-D-alanine carboxypeptidase; penicillin-binding
protein [Streptococcus mutans UA159]
gi|24376631|gb|AAN58023.1|AE014874_9 putative D-alanyl-D-alanine carboxypeptidase; penicillin-binding
protein [Streptococcus mutans UA159]
Length = 414
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 71/368 (19%), Positives = 144/368 (39%), Gaps = 33/368 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ + ++ + + F + + ++ NTG ++ E D AS+TK+
Sbjct: 2 MKKIVCLLFILISLIGFGVKAEENFDVSAKHAIAVEANTGKILYEKDADTTAGIASITKM 61
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ +K ++ + IS + +++ T+ ++ ++ SA
Sbjct: 62 LTVYMVYKEIKSGDLTWSSKVKISDYPYSLTKDYSASNVPMDAREYTVKELVEASMIASA 121
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HG 162
N A+A+AE + TE KFV M + G++ +NA G+
Sbjct: 122 NSAAIALAEKVGGTEPKFVDMMKKQLQEWGITDAKLVNASGLNNKTLGDHIYPDSSSEDE 181
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +ARD+AI++ + +FPQ + + + G K N+ + G DG+KT
Sbjct: 182 NMMSARDVAIVAHHLIKEFPQVLKITEKTNSDFSGNKMETYNYMLPNMPYAREGVDGLKT 241
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILG-----ALDRNTRNKVSASLLSMGFYNKTDRKKI 273
G T +G VA++ + LI+V+L + D R + + +LL+ I
Sbjct: 242 GTTELAGACFVATSKENGMRLISVVLNADKSDSDDDAARFQATNNLLNYVNNTYEPITLI 301
Query: 274 NYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + Q ++ + + A K + +K
Sbjct: 302 HKGQTYQGSKVKVIDGKRTTVPAVAKKNFTVIQNKLSHKKNTVSIASKKNGYTAVIKKGQ 361
Query: 328 LLKNKITK 335
L+ K
Sbjct: 362 LVAKATFK 369
>gi|228951945|ref|ZP_04114043.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229069121|ref|ZP_04202413.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
gi|229078751|ref|ZP_04211305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
gi|229177976|ref|ZP_04305348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
gi|228605464|gb|EEK62913.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
gi|228704624|gb|EEL57056.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
gi|228714066|gb|EEL65949.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
gi|228807868|gb|EEM54389.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 363
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 77/308 (25%), Positives = 117/308 (37%), Gaps = 13/308 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +G V+ P AS+TK+MTA + K K +++S
Sbjct: 18 NVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAESGKMK-----EMVSVSN 72
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K G + L++ + L+++S ND A IAES+ + FV MN +K
Sbjct: 73 EAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKE 132
Query: 145 LGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ THF N HG+ HY++A DMA+L+ + + F K + YP
Sbjct: 133 IGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWK 191
Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + A G KTGFT +G +V +A + LI V L A +L
Sbjct: 192 NKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKDGLDLIVVTLSASSD---WDDHMNLF 248
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
GF K + + E N +K K
Sbjct: 249 DKGFERFKQTKVLGQGAIAEINEKKYANHVYTKNSFSVPLTEEEKKNVVLKVELHKSIKL 308
Query: 321 IDFEKITL 328
D K+
Sbjct: 309 TDGVKVGK 316
>gi|199597923|ref|ZP_03211348.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus HN001]
gi|258507249|ref|YP_003170000.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus GG]
gi|199591180|gb|EDY99261.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus HN001]
gi|257147176|emb|CAR86149.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus GG]
gi|259648615|dbj|BAI40777.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus GG]
Length = 436
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 59/387 (15%), Positives = 123/387 (31%), Gaps = 55/387 (14%)
Query: 1 MRQFLVIIAMAMLSNIF------------PFLSIAETNKLPYYTLLDTNTGHVIAENYPD 48
M++ L + AM++ + S ++ TG V+
Sbjct: 1 MKKLLRGLVAAMVAVLMIGGAAPAVSVAAAESSDTNLVNAKAAVAIEPTTGKVLYAKNAS 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TK+++ +V +K K +T+ ++ ++
Sbjct: 61 TVLPIASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIWTISQDRDLSNVPLRRDGSYSV 120
Query: 109 KLLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------ 158
+ L S A A ++ +++KFV M+ K+ G++ +N G+
Sbjct: 121 RELYDASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLKSWGITDAKIVNVTGLNNSQLK 180
Query: 159 --------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW 205
+ +A+DMA ++ + D P+ + I + N +W
Sbjct: 181 DAKVPGTGDNAENEMSAKDMAQVAQHLIKDHPEVLKTTSIARQTFRKGTDDAINMENWDW 240
Query: 206 A------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSA 257
L DG+KTG + A+G + + +I V+L A + R +
Sbjct: 241 MLKGLVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVVLHANGDAKTRRFDETK 300
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSN------------EVPNISEEVCTTQKEIIN 305
L++ N N ++ ++ K+ +
Sbjct: 301 KLMTHVLENWKTITLANAGQSIKGYSKVNVNRGASRTTPIAPSAKAVAVVPTDASKKTLK 360
Query: 306 YNTQMKEAKDKESHFIDFEKITLLKNK 332
Y + K + +K T + N
Sbjct: 361 YTYTPAKGVKKNTIEAPVKKGTTIGNL 387
>gi|51598858|ref|YP_073046.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBi]
gi|51573429|gb|AAU07454.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBi]
Length = 401
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 78/321 (24%), Positives = 124/321 (38%), Gaps = 25/321 (7%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L+D +T ++ P+ + PASLTK++T Y +++ L + + IS +AS
Sbjct: 40 AKSIVLMDFDTKRILYSKNPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99
Query: 88 EYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
Y +KG + + LK L V S ND ++AIAE + FV MN
Sbjct: 100 YYNAPLNSSLMFLEKGQIVNFEEILKGLSVSSGNDASIAIAEFVVGDLNSFVNLMNINVL 159
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----- 198
NLGL HF+ G + TA DMA F ++ +K
Sbjct: 160 NLGLFNMHFVEPSGYSN-ENKITALDMAFFVKSYIEKFKFMLNIHSLKYFVYPKSKNLGT 218
Query: 199 ---------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL-- 247
K N N + + +DG+KTG+ SG N+VA+A + + LIAV+LG
Sbjct: 219 TLSSKFLNLKQKNANLLISDYPYSDGLKTGYIKESGLNLVATAQKDGRRLIAVVLGVKKG 278
Query: 248 ----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
R ++ L GF + I + + Y + E +
Sbjct: 279 INGLGEKMRALIAKDLFEYGFNEYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYVLTKD 338
Query: 304 INYNTQMKEAKDKESHFIDFE 324
++ DK + +
Sbjct: 339 EFDKLKISYTVDKLVAPLSGD 359
>gi|225163790|ref|ZP_03726088.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutaceae bacterium
TAV2]
gi|224801583|gb|EEG19881.1| Serine-type D-Ala-D-Ala carboxypeptidase [Opitutaceae bacterium
TAV2]
Length = 310
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 82/284 (28%), Positives = 133/284 (46%), Gaps = 20/284 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---------KLPYYTLLDTNTGHVIAENYPDHPW 51
MR L + + +++ A+ Y + D TG V+ E D P
Sbjct: 1 MRIILPFVLGLLAASLASPAHAAKPAAVPPPATTGAHRGYIVTDAATGRVLLEENSDAPN 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TKLMT VV + ++ TP+TIS A S + T+D+ L L
Sbjct: 61 PPASVTKLMTFLVVHDKITARQLSFDTPVTISLEAQRMGGSQVYLETQERFTVDDLLYAL 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------QHGHYT 165
+V+SAND A+A+AE+ + + FV+ MN + LG++ T + HG+ Q
Sbjct: 121 MVQSANDAAIALAEAAAGSREAFVELMNTRAHQLGMTHTTWRTPHGLPPNTSLGQEPDLA 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVGTFLGADGMKTGFT 221
+ RD+A+LS + + + Y K + + N N + G DG+KTG+
Sbjct: 181 SPRDIALLSRHLLLN-TDILRYTSTKTRDFRPGPKVQAMKNHNHLLWRVNGCDGLKTGYY 239
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+GF++ A+ + D+ +I V LG +R R+ + ASL+ GF
Sbjct: 240 AKAGFSLAATVQRNDRRIIVVTLGVPERKQRDVLVASLIEKGFA 283
>gi|301299390|ref|ZP_07205670.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852996|gb|EFK80600.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 402
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 61/337 (18%), Positives = 139/337 (41%), Gaps = 31/337 (9%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS- 83
+ +D TG +I + AS++KL+TAY++ + + + T +T +
Sbjct: 22 DLEAKSAIAVDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIHKGEITWETRVTPTA 81
Query: 84 ---KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
++ +N ++G + T+ + ++V SAN + I ++ T+ KF+ M
Sbjct: 82 TEVDISNNTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDKMRE 141
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
T+K+LG++ +A+G+ + + RDMAI+S ++ ++P+ +
Sbjct: 142 TAKSLGITDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIKEYPEILE 201
Query: 187 YFQIKGLEIKGK----KYPNTNWAVGTFLG--ADGMKTGFTCASGFNIVASAIQGDQSLI 240
++ ++ NTN + DG+KTG + A+G+ ++ + +I
Sbjct: 202 TTKLTKIDFNDNGEITTVNNTNELLQDDSNLEVDGLKTGTSDAAGYCFASTTNKDGHRII 261
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNK------TDRKKINYIIKDFYQQNLSNEVPNISE 294
VI GA D + R + +LL+ + N T++ + + +Q+ + +
Sbjct: 262 TVIAGAKDNDARFDQTKNLLNYIYNNYDYLAISTNQALRQDVKVKYGKQSSISTIIGNDL 321
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ + K + ++ + +
Sbjct: 322 SLWVPKNTRAKALQIKLTPKS-STIEAPIKQGETVGD 357
>gi|300854527|ref|YP_003779511.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
13528]
gi|300434642|gb|ADK14409.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium
ljungdahlii DSM 13528]
Length = 413
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 81/342 (23%), Positives = 137/342 (40%), Gaps = 13/342 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
I + N+ S A +D T +I E D PAS TKL+TA
Sbjct: 10 LTFIFIFCLSFNVLADNSTALPEIYGKAAITVDMQTNEIIYEKNADIKMYPASTTKLLTA 69
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
++ K + T S+ S + G TM+ ++ + L++ SAND+A
Sbjct: 70 ILLEKNKKPGDMLTYTADAKSQPPSSLNRDLHAIEVGDTMSAEDVMDGLLMYSANDLAYV 129
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR----IK 178
+AE++ K F MN KNL L THF+ +G+ HYTT DM++++ + +
Sbjct: 130 VAENVSKDAPTFSDKMNEEVKNLNLKNTHFVTPNGLHNPNHYTTPYDMSVIARQAFKIPR 189
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
IK + NTN +G G KTG+T +G +VA + +
Sbjct: 190 IQKAMERPANTIKTTKGLAFPIKNTNKLLGK-DGCIAGKTGYTDPAGRCLVAIYNRNGRE 248
Query: 239 LIAVILGA---LDRNTRNKVSASLLSMGFYNKT---DRKKINYIIKDFYQQNLSNEVPNI 292
++ V++G+ + +++ + + ++K K+ +S
Sbjct: 249 MVGVVMGSVYDPADSYVFNDMEKIINWSYSKQPVVLNKKDSIIGRKEVSYNPISFIGIKK 308
Query: 293 SEEVCTTQKEIINYNTQMKEAKD-KESHFIDFEKITLLKNKI 333
S EV K+ + Y KD KE I + LK ++
Sbjct: 309 SLEVPIKIKDDVTYYDNDLNKKDLKEIISIKNTSVEALKGEV 350
>gi|239623520|ref|ZP_04666551.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239521551|gb|EEQ61417.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 427
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 65/342 (19%), Positives = 124/342 (36%), Gaps = 42/342 (12%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D ++G ++ D AS TK+MT + L +T S
Sbjct: 45 KLYAQSAVLMDGSSGRILYGKGQDIIRPMASTTKIMTCILALE-----LGNLDDKVTASS 99
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ P + + G L++ L L+++S ND AV IAE++ + + F MN ++
Sbjct: 100 YAASQPKVHLGVRSGEEYRLEDLLYALMLESYNDAAVMIAENIGGSVEDFAALMNQKAEE 159
Query: 145 LGLSATHFMNAHGVV---------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
LG T+F+ +G+ +H H TTA D+A + + P+ + I +
Sbjct: 160 LGCRDTYFITPNGLDGVKKDKDGVEHIHSTTAADLAAIMRYCVMESPKKEEFLSITRTQN 219
Query: 196 KGKK---------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
N N + G KTGFT +G++ V + ++ + +LG
Sbjct: 220 HTFTDSSGRRSYSCFNHNAFLNMMEGVLSGKTGFTGGAGYSYVGAMENDGRTYVIALLGC 279
Query: 247 ---LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY--------------QQNLSNEV 289
+ + + L + G + + + Q++ +
Sbjct: 280 GWPPHKTYKWADARKLYTYGLEHFQLKDVFREEVLPDIPVTGGLCWEEEGTCQESTGASL 339
Query: 290 PNISEEVCTT--QKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+EE+ E K ++ + +KI +
Sbjct: 340 HLKAEEMHLPLLLGEDEEVQVTKKIPAVLQAPVREGQKIGTI 381
>gi|222098861|ref|YP_002532919.1| d-alanyl-d-alanine carboxypeptidase, putative [Bacillus cereus Q1]
gi|221242920|gb|ACM15630.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus Q1]
Length = 423
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 79/377 (20%), Positives = 138/377 (36%), Gaps = 45/377 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGHVIAENYPDHPWN 52
M++ I+ + +LS ++ T+ ++ TG ++ E PD
Sbjct: 1 MKKIFSILLVFLLSISSLGVT---TSHAEEKIHIEAAAALLFDADTGKILHEQNPDELLA 57
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
AS++KL+ Y V +KE K T + +S A E +N ++ L
Sbjct: 58 IASMSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSNVPFEKGRQYTVRELY 117
Query: 113 VKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV---------- 158
A + +L + +EK F+ N +K LGL F+NA G+
Sbjct: 118 HSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHP 177
Query: 159 ----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA--- 206
+ +ARDM ILS + T +P+ + + + K + N NW
Sbjct: 178 EGTNPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPG 237
Query: 207 -VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF
Sbjct: 238 AAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFN 297
Query: 266 NKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-----S 318
N +K Q +E+ K+ ++ DK
Sbjct: 298 NFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPYKIGTEVDKSLAEDGH 357
Query: 319 HFIDFEKITLLKNKITK 335
+K + + +
Sbjct: 358 LIAPIKKDAKVGSITLE 374
>gi|154686564|ref|YP_001421725.1| DacB [Bacillus amyloliquefaciens FZB42]
gi|154352415|gb|ABS74494.1| DacB [Bacillus amyloliquefaciens FZB42]
Length = 383
Score = 143 bits (361), Expect = 3e-32, Method: Composition-based stats.
Identities = 64/318 (20%), Positives = 119/318 (37%), Gaps = 11/318 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
FL+ + ++D +G V+ H AS+TK+MTA
Sbjct: 10 FLLTFVILFSITDGNTAHAQIHVSAKSAIIIDGASGRVLFAKDEHHKRRIASITKIMTAV 69
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ K + +T+S NA + S + G + L + + L+++S ND A AI
Sbjct: 70 LAIESGK-----MEETVTVSPNAVKTEGSAIYLQPGQKVKLKDLVYGLMLRSGNDAAAAI 124
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + + FV MN ++ +G+ T F N HG+ H + + L + +
Sbjct: 125 AEYVGGSLDGFVFMMNKKAEQIGMENTKFQNPHGLDDHENLYSTAYDMALLTKYAMKIKE 184
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
Y K + + N G + + G KTG+T + +V++A + LI
Sbjct: 185 YRTVSGTKVYKAETMDRVWKNKNKLLTGLYRYSTGGKTGYTKIAKRTLVSTASKDGTDLI 244
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AV + D ++ + F + ++ + I+ +V
Sbjct: 245 AVTINDPDD---WDDHMNMFNYVFEHYKTYVVAKKGGIPKLKKTFYGKRAFIARDVKYLL 301
Query: 301 KEIINYNTQMKEAKDKES 318
KE + +++ K
Sbjct: 302 KEDEIDDVKIRTTLIKPK 319
>gi|291536086|emb|CBL09198.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1]
Length = 414
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 69/323 (21%), Positives = 127/323 (39%), Gaps = 25/323 (7%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ L+D ++G ++ E AS TK++T + L
Sbjct: 38 TEKPDQNSLYAKAAVLMDADSGRILYEKNGHQAMANASTTKILTCIIALENCD-----LD 92
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ +T+S A+ P + ++G L + L L+++S ND AVAIAE + T F +
Sbjct: 93 SEVTVSTLAASQPKVHLGMREGQKFYLKDLLYGLMLESYNDCAVAIAEHIAGTTGDFAKL 152
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN+ ++ +G ++F+ +G+ H+TTA D++++ + I
Sbjct: 153 MNDKAEEIGCEDSYFITPNGLDAKNENGFHHTTAADLSLIMRYCIKTSEMAEQFLTITRE 212
Query: 194 EI---------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
N N + GA KTGFT +G+ V + + D++ I +L
Sbjct: 213 GQYQFSDIDGKNSYTCCNHNAFLQMMDGALSGKTGFTGNAGYCYVGALKRDDRTFIVALL 272
Query: 245 GALDRNT---RNKVSASLLSMG---FYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
N + + L+ G F + + + Q + + I EEV T
Sbjct: 273 ACGWPNNKTYKWADTKKLMQYGISRFRKISLDEIELDAGECAPVQVVDGQGTKIGEEVTT 332
Query: 299 -TQKEIINYNTQMKEAKDKESHF 320
+ + N ++ KD+E H
Sbjct: 333 ELEVAPVKENVELLIEKDQEVHI 355
>gi|168334024|ref|ZP_02692243.1| D-alanyl-D-alanine carboxypeptidase [Epulopiscium sp. 'N.t.
morphotype B']
Length = 426
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 79/363 (21%), Positives = 137/363 (37%), Gaps = 35/363 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M + L+ I + + IFP + IA L+D TG ++ E + + PAS+T
Sbjct: 1 MNKQLIKIMLCVFLLIFPKICIAQEVPKINAEAAILMDAKTGTILYEKNAYNRYYPASIT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
KLMTAY+ IT S + + + S ++G + +D AL L++
Sbjct: 61 KLMTAYLAIQH-----LNPNDYITFSNHAVTSIDSDSSRIGMREGEKLLVDQALHALLLD 115
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND+A A+ E++ T + F Q M T+ + G +AT+F N HG+ HYTT DMA+++
Sbjct: 116 SANDVANALGEAVSGTTENFAQLMTKTAHDFGATATNFANPHGLHNSKHYTTPYDMALIT 175
Query: 175 WRIKTDFPQYMHYFQIKGLEI------------KGKKYPNTNWAVGTF-LGADGMKTGFT 221
I D + N + KTG+T
Sbjct: 176 KAIYNDEYLREIMDTPTYQIPSTNLSNKTIYLSQSHALMNPIRDSQRYREDVILGKTGYT 235
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+G +V +G+ LI VI+ + +LL GF + T
Sbjct: 236 TPAGNTLVTVGKRGEVELIVVIMKGH-LQNYYNDTNALLDYGFKSYTALNLNTPNEVITV 294
Query: 282 QQNLSNEVPNI----------SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
S + + +++ + + +E+ + ++ +
Sbjct: 295 APLYSIQSGKLFEVATCEISTKDKISIVVRSNVYKKDLEVIMDLEENLRLGAKEGDTVGT 354
Query: 332 KIT 334
Sbjct: 355 ITY 357
>gi|228920278|ref|ZP_04083626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228839477|gb|EEM84770.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 363
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 79/308 (25%), Positives = 119/308 (38%), Gaps = 13/308 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +G V+ P AS+TK+MTA + K K +++S
Sbjct: 18 NVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAQSGKMK-----EMVSVSN 72
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K G + L++ + L+++S ND A IAES+ + FV MN +K
Sbjct: 73 EAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKE 132
Query: 145 LGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ THF N HG+ HY++A DMA+L+ + + F K + YP
Sbjct: 133 IGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWK 191
Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + A G KTGFT +G +V +A +G LI V L A +L
Sbjct: 192 NKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVTLSASSD---WDDHMNLF 248
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
GF K + + E N +K DK
Sbjct: 249 DKGFERFKQTKVLGQGAIAEINEKKYANHVYTKNSFSVPLTEEERKNVLLKVELDKSIKL 308
Query: 321 IDFEKITL 328
D K+
Sbjct: 309 EDGVKVGK 316
>gi|229014554|ref|ZP_04171670.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
gi|228746706|gb|EEL96593.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
Length = 425
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 81/332 (24%), Positives = 131/332 (39%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T +TIS A E +N
Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 104
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS I T +P+ + + +
Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKIIITKYPEMLEDTKQRFRNFPDNH 224
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW ++ GADG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 225 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 284
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S +L+ GF N +K K N I +++ P V T + Y
Sbjct: 285 ERFTESRALIEYGFNNFEKQKLKIDKNNKISVVKGKEDYVTVAPEKEVTVVTAKGSKSPY 344
Query: 307 NTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K +K + + + +
Sbjct: 345 KISTEADKSLTEDGHLVAPIKKDAKVGSIVLE 376
>gi|323341544|ref|ZP_08081782.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus ruminis
ATCC 25644]
gi|323091028|gb|EFZ33662.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus ruminis
ATCC 25644]
Length = 448
Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats.
Identities = 69/355 (19%), Positives = 126/355 (35%), Gaps = 44/355 (12%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS- 83
+ +D TG ++ + AS++KLMT Y+V +K K I
Sbjct: 50 NLDVKAAIAVDAKTGQILYAKNAEQALPVASMSKLMTVYLVLQAIKNGKLSWNQEILPDA 109
Query: 84 ---KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
K + + SN K T+ + ++ SAN A+A+A ++ T K F+ M
Sbjct: 110 ASQKVSQDTQLSNVPLKADHKYTVKALYQATLIYSANGAAMALANAVGGTHKNFIDMMRK 169
Query: 141 TSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMH 186
++ +G++ A+G+ + +A+DMAI+S R+ D+P+ +
Sbjct: 170 EARKMGINDAEIYTANGLTNDEVFDAKYPGASDNAENKFSAKDMAIISQRLIEDYPEVLE 229
Query: 187 YFQIKGLEIKG----KKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+I ++ N NW + L DG+KTG + ++G + +
Sbjct: 230 TTKITRMKFNNGTDETTMENWNWMLPGLAKAYSELPVDGLKTGTSDSAGACFTGTVNKDG 289
Query: 237 QSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKK------INYIIKDFYQQNLS 286
LI V+LGA + R + L+S + N + N Y
Sbjct: 290 HRLITVVLGAKHDSQEDLSRFVETQKLMSYCYNNYSYETIKAGKAFKNAASLPVYHGKDL 349
Query: 287 NEVPNISEEVCTTQKEII---NYNTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K + N ++ K +K + K
Sbjct: 350 KVAVSSKNGTDVWLKSSVSSANLVAKLSGDKKLYKDGGLVAPLKKGQTVGELSVK 404
>gi|219684372|ref|ZP_03539316.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBr]
gi|219672361|gb|EED29414.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia garinii PBr]
Length = 392
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 78/321 (24%), Positives = 122/321 (38%), Gaps = 25/321 (7%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L+D +T ++ P+ + PASLTK++T Y +++ L + + IS AS
Sbjct: 31 AKSIVLMDFDTKRILYSKNPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDAAS 90
Query: 88 EYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
Y +KG + + LK L V S ND ++AIAE + FV MN
Sbjct: 91 YYNAPLNSSLMFLEKGQIVNFEEILKGLSVSSGNDASIAIAEFVVGDLNSFVNLMNINVL 150
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----- 198
NLGL HF+ G + TA DMA F ++ +K
Sbjct: 151 NLGLLNMHFVEPSGYSN-ENKITALDMAFFVKSYIEKFKFMLNIHSLKYFVYPKSKNLGT 209
Query: 199 ---------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K N N + + +DG+KTG+ SG N+VA+A + + LIAV+LG
Sbjct: 210 TLSSKFLNLKQKNANLLISDYPYSDGLKTGYIKESGLNLVATAQKYGRRLIAVVLGVEKG 269
Query: 250 NTRNKV------SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
R + L GF + I + + Y + E +
Sbjct: 270 INRFGEKMRALIAKDLFEYGFNEYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYVLTKD 329
Query: 304 INYNTQMKEAKDKESHFIDFE 324
++ DK + +
Sbjct: 330 EFDKLKISYTVDKLVAPLSGD 350
>gi|228957844|ref|ZP_04119584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228801760|gb|EEM48637.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 363
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 80/308 (25%), Positives = 120/308 (38%), Gaps = 13/308 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +G V+ P AS+TK+MTA + K KK +++S
Sbjct: 18 NVSARNAVLMEQQSGRVLYGKAEHEPQKIASITKIMTALLAAESGKMKK-----MVSVSN 72
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A S K G + L++ + L+++S ND A IAES+ + FV MN +K
Sbjct: 73 EAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGNDAAQVIAESVGGSIDGFVYLMNQKAKE 132
Query: 145 LGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ THF N HG+ HY++A DMA+L+ + + F K + YP
Sbjct: 133 IGMKDTHFSNPHGLDGDGSHYSSAYDMALLTKYAMGN-ETFKKIFGTKTYKSDSWDYPWK 191
Query: 204 NWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + A G KTGFT +G +V +A +G LI V L A +L
Sbjct: 192 NKHKLVTSYYEFATGGKTGFTKKAGRTLVTTASKGGLDLIVVTLSASSD---WDDHMNLF 248
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
GF K + + E N +K DK
Sbjct: 249 DKGFERFKQTKVLGQGAIAEINEKKYANHVYTKNSFSVPLTEEERKNVLLKVELDKSIKL 308
Query: 321 IDFEKITL 328
D K+
Sbjct: 309 EDGVKVGK 316
>gi|89099074|ref|ZP_01171953.1| DacB [Bacillus sp. NRRL B-14911]
gi|89086204|gb|EAR65326.1| DacB [Bacillus sp. NRRL B-14911]
Length = 376
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 73/340 (21%), Positives = 130/340 (38%), Gaps = 17/340 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L IA + +N+ + A + L++ +TG ++ E AS+TK+MTA
Sbjct: 2 LLSCIAAVLAANLPAKVQAAYSASSGSAILMEQSTGRILYEKDAYTKKRIASITKIMTAI 61
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ K L T +S+ A S+ + G + L++ + L+++S ND AVAI
Sbjct: 62 LAIESGK-----LDTKAKVSEKAVRAEGSSIYLQPGEKILLEDLVYGLMLRSGNDSAVAI 116
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + + + FV MN ++ +G+ THF N HG+ H + + + R +
Sbjct: 117 AEHVGGSLEGFVYLMNKKAEEIGMINTHFANPHGLDDHEEHYSTAYDMAVLTRYAMNNET 176
Query: 184 YMHYFQIKGLEIKGKK------YPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
Y K + N N + G KTG+T + +V +A +
Sbjct: 177 YRKIAGTKMHRAPNPNESWDRVWKNKNRLLTEMYEYCTGGKTGYTKRAKRTLVTTASKDG 236
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296
LIAV L D + GF + +K + + + + +
Sbjct: 237 LDLIAVTLNGPDD---WNDHIGMYESGFKEYSLKKVVEQGGIRELEDTAYEKKAFLKTDY 293
Query: 297 CTT--QKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ E + + K K S D + ++ I
Sbjct: 294 SYPASENEKDLFRVEYKMLKPSGSWKEDKDFPDVVGRAIV 333
>gi|228911227|ref|ZP_04075032.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
200]
gi|228848403|gb|EEM93252.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
200]
Length = 423
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 81/377 (21%), Positives = 141/377 (37%), Gaps = 45/377 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGHVIAENYPDHPWN 52
M++ L I+ + +LS ++ T+ ++ TG ++ E PD
Sbjct: 1 MKKILSILLLFVLSISSLGVT---TSHAEEKIHIEAAAALLFDADTGKILHEQNPDELLA 57
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
AS++KL+ Y V +KE K T + IS A E +N +K L
Sbjct: 58 IASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVKELY 117
Query: 113 VKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV---------- 158
A + +L + +EK F+ N +K LGL F+N+ G+
Sbjct: 118 HSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNSTGLNNADLKGKHP 177
Query: 159 ----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA--- 206
+ +ARDM IL+ I T +P+ + + + K + N NW
Sbjct: 178 EGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPG 237
Query: 207 -VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF
Sbjct: 238 AAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFN 297
Query: 266 NKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-----S 318
N +K + +E+ K+ ++ DK
Sbjct: 298 NFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPYKIGTELDKSLAEDGH 357
Query: 319 HFIDFEKITLLKNKITK 335
+K T + + +
Sbjct: 358 LVAPVKKDTKVGSITLE 374
>gi|229142132|ref|ZP_04270657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
gi|228641421|gb|EEK97727.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
Length = 425
Score = 143 bits (360), Expect = 4e-32, Method: Composition-based stats.
Identities = 83/374 (22%), Positives = 141/374 (37%), Gaps = 39/374 (10%)
Query: 1 MRQFLVIIAMAMLS--NIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ I+ + +LS ++ S AE + L D +TG ++ E PD AS
Sbjct: 3 MKKIFSILLVFLLSISSLVVTTSHAEEKIHIEAAAALLFDADTGKILHEQNPDELLAIAS 62
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
++KL+ Y V +KE K T + +S A E +N ++ L
Sbjct: 63 MSKLIVVYAVLEAIKEGKITWDTKVNVSDYAYEVSRNNEFSNVPFEKGRQYTVRELYHSI 122
Query: 116 ANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
A + +L + +EK F+ N +K LGL F+NA G+
Sbjct: 123 VIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHPEGT 182
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA----VG 208
+ +ARDM ILS + T +P+ + + + K + N NW
Sbjct: 183 DPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPGAAF 242
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF N
Sbjct: 243 AYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFNNFE 302
Query: 269 DRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-----SHFI 321
+K Q +E+ K+ ++ DK
Sbjct: 303 KQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPYKIGTEVDKSLAEDGHLIA 362
Query: 322 DFEKITLLKNKITK 335
+K + + +
Sbjct: 363 PIKKDAKVGSITLE 376
>gi|152974993|ref|YP_001374510.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023745|gb|ABS21515.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
391-98]
Length = 373
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 78/336 (23%), Positives = 131/336 (38%), Gaps = 16/336 (4%)
Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++ + ++ M M + + L++ ++G V+ P AS+T
Sbjct: 1 MKRAWVIVALLIMCMHTMPNSTYAQMNNVSAHNAVLMEEHSGRVLYGKREHEPQKIASIT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MTA + K K ++IS A S K G + L++ + L+++S N
Sbjct: 61 KIMTALLAAESGKMK-----EMVSISNKAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSGN 115
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWR 176
D A AIAE + + + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 116 DAAQAIAEKVGGSIEGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGTHYSSAYDMALLTKY 175
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAI 233
+ + F K + + YP N + A G KTGFT +G +V +A
Sbjct: 176 AMGN-ETFRKIFGTKTYQSESWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTAS 234
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ I V L A L GF K + ++
Sbjct: 235 KNGLDFIVVTLKASSD---WDDHMYLFDQGFKRYKLTKVLAQGAFPELKEKKYAHHVYTK 291
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
++ DK ++ D K+ +
Sbjct: 292 NGFAVPLASDEKNKVLLRVELDKRANLKDGNKVGKI 327
>gi|320538339|ref|ZP_08038220.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema phagedenis
F0421]
gi|320144838|gb|EFW36573.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema phagedenis
F0421]
Length = 478
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 72/274 (26%), Positives = 114/274 (41%), Gaps = 21/274 (7%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ A + + +TG ++ E D PASLTKL+ YV + + L
Sbjct: 84 QNPAPILAAQSVIVANADTGQLLYEYQADRKIPPASLTKLVAMYVAMQAIDSGEITLDQV 143
Query: 80 ITISKNASEYPPSNS----TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ + + +T+ L+ + V S ND A+A+A ++ + KFV
Sbjct: 144 VVPPRESWAENIPPGSSLLFLGPNQQLTVSELLRGMAVVSGNDAAIALAHAVSGSVPKFV 203
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-YFQIKGLE 194
+ M+ K LGL T F G+ +YTTARD A ++P+ + + ++ L
Sbjct: 204 ERMSQAVKTLGLKHTVFTEPSGL-SEENYTTARDFARFCLVYIREYPENLERFHALQELT 262
Query: 195 IK---------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
P TN +G G DG+KTGF SGFNI + + ++AVILG
Sbjct: 263 YPLSHNVKNLISITQPATNTLLGKLKGCDGLKTGFIYESGFNIALTCKRAGTRILAVILG 322
Query: 246 ------ALDRNTRNKVSASLLSMGFYNKTDRKKI 273
A R R K +++ F+N I
Sbjct: 323 GAGKTIAQGRAIREKDGEKIMNWAFHNFQTYPLI 356
>gi|291542266|emb|CBL15376.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63]
Length = 374
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 69/342 (20%), Positives = 127/342 (37%), Gaps = 20/342 (5%)
Query: 1 MRQFL-VIIAMAMLSNIFPFLSI---AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ + + + M + + T + L + VI D PAS
Sbjct: 1 MKKIISLAVCFVMPFVLMGAKNAEDTPPTTSAQAFVLYCPDNNTVICSKNADERMKPAST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MT+ + + +T K S+ K G + L + +++ S
Sbjct: 61 TKIMTSLITLEEAASCNSEVT-----FKQEMVAEGSSMYLKVGEKVRLSDLASGMMMASG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND A A A ++ + +KF Q MN +K +G++ T+F+ G+ HY++A+DMA+L
Sbjct: 116 NDAANAAAYTISGSSEKFSQRMNEKAKQIGMTNTNFVTPSGLDDDNHYSSAKDMALLMSY 175
Query: 177 IKTDFPQYMHYFQIK------GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + + K Y N N + + G KTG+T +G +V+
Sbjct: 176 ALENDDFANLTAKKSVTVEFLEPKTKKTAYANHNRLLSLYPYCTGGKTGYTTVAGRCLVS 235
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR--KKINYIIKDFYQQNLSNE 288
SA + +L+ V L + SL F K ++ +
Sbjct: 236 SAKKDGVTLVCVTLNDRND---WNDHISLYDYAFEKYRGVDCKDADFCADIPCVGGDKDS 292
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
V E+ T + + + K+ + EK +
Sbjct: 293 VTVTGEKNNTIVLKREDCDKIKKKIFIDSFLYAPIEKNESVG 334
>gi|253752532|ref|YP_003025673.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis SC84]
gi|253754358|ref|YP_003027499.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis P1/7]
gi|251816821|emb|CAZ52465.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus suis
SC84]
gi|251820604|emb|CAR47361.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus suis
P1/7]
gi|319758942|gb|ADV70884.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis JS14]
Length = 413
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 62/356 (17%), Positives = 137/356 (38%), Gaps = 31/356 (8%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ P L+ + + ++ ++G ++ E + + AS++K ++ Y+V+ L
Sbjct: 13 AVFLTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASISKTLSIYLVYEALA 72
Query: 71 EKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+ + L T + IS ++ + ++ + L ++ S+N +A+AE +
Sbjct: 73 KGEITLDTMVDISDYPYSLTSNTELSNVNLDERSYSVRDLLNASLITSSNSAIIALAEKI 132
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAIL 173
+E FV M + G++ T +N G+ + +A D+AI+
Sbjct: 133 AGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDVAII 192
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIV 229
+ R+ D+PQ + + + G Y +TN + G DG+KTG + ++G + +
Sbjct: 193 ARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFL 252
Query: 230 ASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIK------D 279
A+ Q +I V+L A R + L++ + N + +
Sbjct: 253 ATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSLVTLVKKSEAFGDSKIK 312
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ Q+ + D + + TL+ K
Sbjct: 313 VFNGEKETSPVVAAADLTVVQRNQTDNVPTATFTTDIKEIDAPLKAGTLVSKLQLK 368
>gi|213162143|ref|ZP_03347853.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
Length = 247
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 7/232 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A S K G +++ + K +I++S ND
Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIV 229
D P + K + PN N T L DGMKTG T +G+N+V
Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGAGYNLV 247
>gi|228988616|ref|ZP_04148702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228771067|gb|EEM19547.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 423
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 81/377 (21%), Positives = 138/377 (36%), Gaps = 45/377 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGHVIAENYPDHPWN 52
M++ L I+ +LS ++ T+ ++ TG ++ E PD
Sbjct: 1 MKKILSILLAFLLSISSLGVT---TSHAEEKIHIEAAAALLFDADTGKILHEQNPDELLA 57
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
AS++KL+ Y V +KE K T + IS A E +N ++ L
Sbjct: 58 IASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSNVPFEKGRQYTVRELY 117
Query: 113 VKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGV---------- 158
A + +L + +EK F+ N +K LGL F+NA G+
Sbjct: 118 HSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFVNATGLNNADLKGKHP 177
Query: 159 ----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA--- 206
+ +ARDM ILS + T +P+ + + + K + N NW
Sbjct: 178 EGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNHPKPIRMENWNWMLPG 237
Query: 207 -VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ G DG+KTG + +G+ +A +GD LI+VI+ + R S L+ GF
Sbjct: 238 AAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMDERFTESRELIEYGFN 297
Query: 266 NKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE-----S 318
N +K Q +E+ K+ ++ DK
Sbjct: 298 NFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPYKIGTEVDKSLAEDGH 357
Query: 319 HFIDFEKITLLKNKITK 335
+K + + +
Sbjct: 358 LVAPIKKDAKVGSITLE 374
>gi|116514484|ref|YP_813390.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116093799|gb|ABJ58952.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|325126190|gb|ADY85520.1| D-alanyl-d-alanine carboxypeptidase [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
Length = 428
Score = 143 bits (359), Expect = 4e-32, Method: Composition-based stats.
Identities = 67/339 (19%), Positives = 127/339 (37%), Gaps = 34/339 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT--- 81
+ +D ++G ++ P AS+TKL+T Y+ +K+ K T+
Sbjct: 43 NLDVKAAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTA 102
Query: 82 -ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I+K + SN G T+ + +++SAN A+ +A+++ + F++ M
Sbjct: 103 AIAKISQNTEYSNVPLTSGHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFIKKMRK 162
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ G+ NA G+ + +A DMAI+ ++ DFP+ +
Sbjct: 163 LLTSWGIKDAKIYNACGLANGSLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQ 222
Query: 187 YFQIKGLEI----KGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQGD 236
I + N NW + L DG+KTG T +G + +
Sbjct: 223 TTSITSATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNG 282
Query: 237 QSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+I V+LGA N +R +A L+ + N T E
Sbjct: 283 HRIITVVLGAKHANSQDPSRFVQTAKLMHYVYQNYTAVTLKKGSSISGANTVKVPEGKET 342
Query: 293 SEEVCTTQKEIINYN--TQMKEAKDKESHFIDFEKITLL 329
S +V + I ++++ + K + +K + +
Sbjct: 343 SSKVVLGKTVTIWAKQGSKLQTSLSKTAVSAPVKKGSKV 381
>gi|210614210|ref|ZP_03290105.1| hypothetical protein CLONEX_02318 [Clostridium nexile DSM 1787]
gi|210150787|gb|EEA81795.1| hypothetical protein CLONEX_02318 [Clostridium nexile DSM 1787]
Length = 469
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 67/338 (19%), Positives = 133/338 (39%), Gaps = 18/338 (5%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN + ++D ++G ++ D PAS+TK++TA V +
Sbjct: 56 SNALAGWPVGPNIYSESGIVMDMDSGAILYAKKIDDQHYPASITKILTAVVALENSQLTD 115
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ T I + EY ++ K G +++++AL +++ SAN+++ AIA S+
Sbjct: 116 RVKFTQNCI--DFLEYGDAHIGMKVGEEISMEDALYGMLLASANEVSYAIANSVNGGYDN 173
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F+ MN LG + +HF+NA+G+ HYT+A DMA++ + ++ +
Sbjct: 174 FINMMNEKVAELGGTNSHFVNANGLHNDEHYTSAHDMALIGA-AAFKYEEFRKITGTRQY 232
Query: 194 EIKGKKYPNTNWAVG------------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
I + + + G KTG+T + +V A + D++L+A
Sbjct: 233 TIGPTALTSESRTFQQNHKMLFQGNRNYYEYCVGGKTGYTDQALTTLVTFATKDDKNLVA 292
Query: 242 VILGAL-DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
V L + ++L F N + + D +++ + T
Sbjct: 293 VTLRVHGGGQNAYVDTRAMLDYAFDNFSKVPVTKEQVTDKNIKSVDENAYVMLPSGVTFD 352
Query: 301 KEIINYNTQMKEAKDKES--HFIDFEKITLLKNKITKK 336
K + + + +++ + IT K
Sbjct: 353 KLDATLQEPTELGDKSGTLIYTYQGQEVGKVPVTITDK 390
>gi|104774384|ref|YP_619364.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|103423465|emb|CAI98355.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 428
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 67/339 (19%), Positives = 127/339 (37%), Gaps = 34/339 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT--- 81
+ +D ++G ++ P AS+TKL+T Y+ +K+ K T+
Sbjct: 43 NLDVKAAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTA 102
Query: 82 -ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I+K + SN G T+ + +++SAN A+ +A+++ + F++ M
Sbjct: 103 AIAKISQNTEYSNVPLTSGHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFIKKMRK 162
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ G+ NA G+ + +A DMAI+ ++ DFP+ +
Sbjct: 163 LLTSWGIKDAKIYNACGLANGSLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQ 222
Query: 187 YFQIKGLEI----KGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQGD 236
I + N NW + L DG+KTG T +G + +
Sbjct: 223 TTSITSATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNG 282
Query: 237 QSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+I V+LGA N +R +A L+ + N T E
Sbjct: 283 HRIITVVLGAKHANSQDPSRFVQTAKLMHYVYQNYTAITLKKGSSISGANTVKVPEGKET 342
Query: 293 SEEVCTTQKEIINYN--TQMKEAKDKESHFIDFEKITLL 329
S +V + I ++++ + K + +K + +
Sbjct: 343 SSKVVLGKTVTIWAKQGSKLQTSLSKTAVSAPVKKGSKV 381
>gi|239625589|ref|ZP_04668620.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519819|gb|EEQ59685.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 391
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 68/256 (26%), Positives = 107/256 (41%), Gaps = 21/256 (8%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ LLD TG+V+ D + PAS+TKLMTA +V L +T S
Sbjct: 9 PAIEAEGAALLDAATGNVLFSKNGDTKFYPASITKLMTALLVAENC-----NLDDKVTFS 63
Query: 84 KNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
A+ + G MT+ L L++KSAN++ A+AE + + KF + MN
Sbjct: 64 STATTNLESGAVSINMTAGDVMTVRQCLYALLLKSANEVGNALAEHVAGSNAKFAEMMNA 123
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL------- 193
+ LG + THF N HG+ HYTT RDMA+++ +
Sbjct: 124 KAAALGCTNTHFTNPHGLNDTNHYTTPRDMALIARAAFQNDTVKTVASTRTYTLPPTIKN 183
Query: 194 ----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ + G G KTG+T +G +V + + LIAV++ +
Sbjct: 184 PSGLTVTMGHKMLNPSDSRYYPGVIGGKTGYTSKAGNTLVTAVEKDGVRLIAVVM--KSK 241
Query: 250 NTRNKVSASLLSMGFY 265
+T + ++ GF
Sbjct: 242 STHYTDTKAMFDYGFE 257
>gi|15674465|ref|NP_268639.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes M1 GAS]
gi|13621563|gb|AAK33360.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
[Streptococcus pyogenes M1 GAS]
Length = 410
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 70/364 (19%), Positives = 142/364 (39%), Gaps = 29/364 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + +D +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+AI++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKI-- 273
++ +G + VA++++ +I V+L A D K + LL N + I
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQLIEN 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ--MKEAKDKESHFIDFEKITLLKN 331
N +K Y + + + + + I+ T+ + K + K +L
Sbjct: 302 NKPVKTLYVLDSPEKTVKLVAQNSLFFIKPIHTKTKNTVHITKKSSTMIAPLSKGQVLGR 361
Query: 332 KITK 335
+
Sbjct: 362 ATLQ 365
>gi|56807642|ref|ZP_00365536.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Streptococcus
pyogenes M49 591]
Length = 410
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 69/364 (18%), Positives = 142/364 (39%), Gaps = 29/364 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + +D +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+A+++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAVIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKI-- 273
++ +G + VA++++ +I V+L A D K + LL N + I
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQLIEN 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ--MKEAKDKESHFIDFEKITLLKN 331
N +K Y + + + + + I+ T+ + K + K +L
Sbjct: 302 NKPVKTLYVLDSPEKTVKLVAQNSLFFIKPIHTKTKNTVHITKKSSTMIAPLSKGQVLGR 361
Query: 332 KITK 335
+
Sbjct: 362 ATLQ 365
>gi|253756292|ref|YP_003029432.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis BM407]
gi|251818756|emb|CAZ56593.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus suis
BM407]
Length = 413
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 62/356 (17%), Positives = 137/356 (38%), Gaps = 31/356 (8%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ P L+ + + ++ ++G ++ E + + AS++K ++ Y+V+ L
Sbjct: 13 AVFLTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASISKTLSIYLVYEALA 72
Query: 71 EKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+ + L T + IS ++ + ++ + L ++ S+N +A+AE +
Sbjct: 73 KGEITLDTMVDISDYPYSLTSNTELSNVNLDERSYSVRDLLNASLITSSNSAIIALAEKI 132
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAIL 173
+E FV M + G++ T +N G+ + +A D+AI+
Sbjct: 133 AGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPSSSPEDVNMFSALDVAII 192
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIV 229
+ R+ D+PQ + + + G Y +TN + G DG+KTG + ++G + +
Sbjct: 193 ARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFL 252
Query: 230 ASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIK------D 279
A+ Q +I V+L A R + L++ + N + +
Sbjct: 253 ATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSLVTLVKKSEAFGDSKIK 312
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ Q+ + D + + TL+ K
Sbjct: 313 VFNGEKETSPVVAAADLTVVQRNQTDNVPTATFTTDIKEIDAPLKAGTLVSKLQLK 368
>gi|254472024|ref|ZP_05085425.1| D-alanyl-D-alanine carboxypeptidase protein [Pseudovibrio sp.
JE062]
gi|211959226|gb|EEA94425.1| D-alanyl-D-alanine carboxypeptidase protein [Pseudovibrio sp.
JE062]
Length = 352
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 99/251 (39%), Positives = 142/251 (56%), Gaps = 1/251 (0%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
A+ + + S+A + P LL+ +T V+ PW PAS TKLMTA V F L
Sbjct: 13 AALGLILISYGSLAPASATPS-LLLNLDTQSVLYAEDAGDPWYPASTTKLMTALVTFEAL 71
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
++ T + +S A S K GS MTL +A+ ++V SAND+AVA+AES+
Sbjct: 72 ANREIDHETSVVMSPWAMRQASLKSGLKVGSVMTLQDAIYAVLVGSANDVAVALAESVAG 131
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+E+ FVQ MN T++ LG++A+HF NA+G+ T+ARD+A+L+ I +PQY F
Sbjct: 132 SEEAFVQRMNATARRLGMTASHFANANGLFDATQQTSARDLAVLAREIYLGYPQYHDVFA 191
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ I GK + N + G GMKTGF C+SG NIVA +G Q +AV+LGA
Sbjct: 192 TSKVTIDGKAITSFNELLTRLPGTVGMKTGFVCSSGRNIVALTDRGGQRYMAVVLGATTG 251
Query: 250 NTRNKVSASLL 260
R++ +A LL
Sbjct: 252 RERSERAAKLL 262
>gi|71910062|ref|YP_281612.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS5005]
gi|71852844|gb|AAZ50867.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS5005]
Length = 410
Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats.
Identities = 70/364 (19%), Positives = 142/364 (39%), Gaps = 29/364 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + +D +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+AI++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKI-- 273
++ +G + VA++++ +I V+L A D K + LL N + I
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQLIEN 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ--MKEAKDKESHFIDFEKITLLKN 331
N +K Y + + + + + I+ T+ + K + K +L
Sbjct: 302 NKPVKTLYVLDSPKKTVKLVAQNSLFFIKPIHTKTKNTVHITKKSSTMIAPLSKGQVLGR 361
Query: 332 KITK 335
+
Sbjct: 362 ATLQ 365
>gi|313893802|ref|ZP_07827368.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. oral
taxon 158 str. F0412]
gi|313441366|gb|EFR59792.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. oral
taxon 158 str. F0412]
Length = 268
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 72/268 (26%), Positives = 124/268 (46%), Gaps = 13/268 (4%)
Query: 5 LVIIAMAMLSNIFPFLS--IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ I +L + + + + L+D +T ++ PD +PAS TK++T
Sbjct: 2 IAFIGATLLGSSISYAAYIAPPSTVGEAVVLIDADTKEILFAKNPDKWMHPASTTKMVTL 61
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
K L TIS A+ SN + G +TL+ L+ ++V S ND AV
Sbjct: 62 LTALEL---KGTQLDELATISSYATSMEESNLGVRVGDQITLEAVLEGMMVASGNDAAVV 118
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIK 178
+AE++ + +KF + M + G + F+N HG+ Q GH++TARD+A++
Sbjct: 119 VAENVSGSVEKFGKDMTRIAAKAGAKNSVFLNPHGLTQMGHHSTARDLAMIAAYGMKYQM 178
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQ 237
Y+++ TN + + GA+G+KTGFT A+G ++ASA +
Sbjct: 179 FRDKVANDYYKVPYQNRAPVTIRTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRNGH 238
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFY 265
++I V+L + R + + L GF
Sbjct: 239 TMIVVMLN---DDNRWEEAVQFLDYGFK 263
>gi|90961063|ref|YP_534979.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
salivarius UCC118]
gi|90820257|gb|ABD98896.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
salivarius UCC118]
Length = 418
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 64/359 (17%), Positives = 148/359 (41%), Gaps = 32/359 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+++ + LS I ++ + + +D TG +I + AS++KL+TA
Sbjct: 16 LIIVTGVGQLSLIKADQTLPQLDLEAKSAIAIDAKTGQIIYAKDDKQTYPVASMSKLLTA 75
Query: 63 YVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
Y++ + + + T +T + ++ +N ++G + T+ + ++V SAN
Sbjct: 76 YILLQAIHKGEVTWETKVTPTATEVDISNNTELTNVPLQEGHSYTIRQLYQAMLVGSANA 135
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHY 164
+ I ++ T+ KF+ M T+K+LG++ +A+G+ +
Sbjct: 136 ATMLIGNAISGTQTKFIDKMRETAKSLGITDAKIYSANGLTAKYLGDEIYPNTDENAENE 195
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----KYPNTNWAVGTFLG--ADGMKT 218
+ RDMAI+S ++ ++P+ + ++ ++ NTN + DG+KT
Sbjct: 196 FSVRDMAIISQKLIKEYPEILETTKLTKIDFNDNGEITTVNNTNELLQDDSNLEIDGLKT 255
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK------TDRKK 272
G + A+G+ ++ + +I VI GA D + R + +LL+ + N T++
Sbjct: 256 GTSDAAGYCFASTTNKDGHRIITVIAGAKDNDARFDQTKNLLNYIYNNYDYLAISTNQAL 315
Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ +Q+ + + + + K + ++ + +
Sbjct: 316 RQDAKVKYGKQSSVSAIIGNDLSLWVPKNTREKALQIKLTPKS-STIEAPIKQGETVGD 373
>gi|300812512|ref|ZP_07092935.1| beta-lactamase [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496511|gb|EFK31610.1| beta-lactamase [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 428
Score = 142 bits (358), Expect = 5e-32, Method: Composition-based stats.
Identities = 68/339 (20%), Positives = 127/339 (37%), Gaps = 34/339 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT--- 81
+ +D ++G ++ P AS+TKL+T Y+ +K+ K T+
Sbjct: 43 NLDVKAAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTA 102
Query: 82 -ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I+K + SN G T+ + +++SAN A+ +A+++ + FV+ M
Sbjct: 103 AIAKISQNTEYSNVPLTSGHAYTIKELYRATLIESANGAALTLAQAVSGDQVTFVKKMRE 162
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ G+ NA G+ + +A DMAI+ ++ DFP+ +
Sbjct: 163 LLTSWGIKDAKIYNACGLANGSLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQ 222
Query: 187 YFQIKGLEI----KGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQGD 236
I + N NW + L DG+KTG T +G + +
Sbjct: 223 TTSITSATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNG 282
Query: 237 QSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+I V+LGA N +R +A L+ + N T E
Sbjct: 283 HRIITVVLGAKHANSQDPSRFVQTAKLMHYVYQNYTAVTLKKGSSISGANTVKVPEGKET 342
Query: 293 SEEVCTTQKEIINYN--TQMKEAKDKESHFIDFEKITLL 329
S +V + I ++++ + K + +K + +
Sbjct: 343 SSKVVLGKTVTIWAKQGSKLQTSLSKTAVSAPVKKGSKM 381
>gi|313124231|ref|YP_004034490.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280794|gb|ADQ61513.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 428
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 67/339 (19%), Positives = 126/339 (37%), Gaps = 34/339 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT--- 81
+ +D ++G ++ P AS+TKL+T Y+ +K+ K T+
Sbjct: 43 NLDVKAAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTAKPTA 102
Query: 82 -ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I+K + SN T+ + +++SAN A+ +A+++ + FV+ M
Sbjct: 103 AIAKISQNTEYSNVPLTSSHAYTIKELYRATLIESANGAAMTLAQAVSGDQVTFVKKMRK 162
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ G+ NA G+ + +A DMAI+ ++ DFP+ +
Sbjct: 163 LLTSWGIKDAKIYNACGLANGNLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQ 222
Query: 187 YFQIKGLEI----KGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQGD 236
I + N NW + L DG+KTG T +G + +
Sbjct: 223 TTSITSATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNG 282
Query: 237 QSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+I V+LGA N +R +A L+ + N T E
Sbjct: 283 HRIITVVLGAKHANSQDPSRFVQTAKLMHYVYQNYTAVTLKKGSSISGANTVKVPEGKET 342
Query: 293 SEEVCTTQKEIINYN--TQMKEAKDKESHFIDFEKITLL 329
S +V + I ++++ + K + +K + +
Sbjct: 343 SSKVVLDKTVTIWAKQGSKLQTSLSKTTVSAPVKKGSKV 381
>gi|120402569|ref|YP_952398.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii
PYR-1]
gi|119955387|gb|ABM12392.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii
PYR-1]
Length = 403
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 60/283 (21%), Positives = 103/283 (36%), Gaps = 13/283 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + + D ++G VIA P PAS+ K++TA
Sbjct: 80 VITAPGTPPVPADVSAEAWLVADLDSGDVIAARDPHGRHRPASIIKVLTAMQAI-----N 134
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L I ++ + + G ++++ L L++ S ND A A+A + +
Sbjct: 135 DLPLHKVIPGTEEDAAQEGTKVGVGPGGFYSINDLLHGLLMYSGNDAAHALAMQMGGMQT 194
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+ +N + LG T G+ G T+A D+ + P + +
Sbjct: 195 ALNK-INALAGKLGARDTRVATPSGLDGPGMSTSAYDIGLFYRY-AWQNPVFTDIVATRS 252
Query: 193 LEIK-----GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GA 246
G N N + + GA G KTGFT +G V +A + + L+AV+L G
Sbjct: 253 SNFPGRDGAGYPIENDNKLLANYPGALGGKTGFTDDAGQTFVGAATRDGRRLVAVLLRGT 312
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
+ +A LL GF K + I D +
Sbjct: 313 RQPIAPWEQAARLLDYGFATAPGTKVGSLIEPDPSLGVTRADP 355
>gi|229136205|ref|ZP_04264956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
gi|228647258|gb|EEL03342.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
Length = 425
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 81/332 (24%), Positives = 130/332 (39%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T +TIS A E +N
Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 104
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS I T +P+ + + +
Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKIIITKYPEMLEDTKQRFRNFPDNH 224
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + GADG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 225 PKPIRMENWNWMLPGAAFAYEGADGLKTGSSDTAGYGFTITATRGDLRLISVIIKTKSMD 284
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S +L+ GF N +K K N I +++ P V T + Y
Sbjct: 285 ERFTESRALIEYGFNNFEKQKLKIDKNNKISVVKGKEDYVTVAPEKEVTVVTAKGSKSPY 344
Query: 307 NTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K +K + + + +
Sbjct: 345 KISTEADKSLAEDGHLVAPIKKDAKVGSIVLE 376
>gi|300214001|gb|ADJ78417.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
salivarius CECT 5713]
Length = 385
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 61/337 (18%), Positives = 139/337 (41%), Gaps = 31/337 (9%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS- 83
+ +D TG +I + AS++KL+TAY++ + + + T +T +
Sbjct: 5 DLEAKSAIAVDAKTGQIIYAKDDKQTYPVASMSKLLTAYILLQAIHKGEVTWETKVTPTA 64
Query: 84 ---KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
++ +N ++G + T+ + ++V SAN + I ++ T+ KF+ M
Sbjct: 65 TEVDISNNTELTNVPLQEGHSYTIRQLYQAMLVGSANAATMLIGNAISGTQTKFIDKMRE 124
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
T+K+LG++ +A+G+ + + RDMAI+S ++ ++P+ +
Sbjct: 125 TAKSLGITDAKIYSANGLTAKYLGDEIYPNTDENAENEFSVRDMAIISQKLIEEYPEILE 184
Query: 187 YFQIKGLEIKGK----KYPNTNWAVGTFLG--ADGMKTGFTCASGFNIVASAIQGDQSLI 240
++ ++ NTN + DG+KTG + A+G+ ++ + +I
Sbjct: 185 TTKLTKIDFNDNGEITTVNNTNELLQDDSNLEVDGLKTGTSDAAGYCFASTTNKDGHRII 244
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNK------TDRKKINYIIKDFYQQNLSNEVPNISE 294
VI GA D + R + +LL+ + N T++ + + +Q+ + +
Sbjct: 245 TVIAGAKDNDARFDQTKNLLNYIYNNYDYLAISTNQALRQDVKVKYGKQSSVSTIIGNDL 304
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ + K + ++ + +
Sbjct: 305 SLWVPKNTREKALQIKLTPKS-STIEAPIKQGETVGD 340
>gi|269797345|ref|YP_003311245.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Veillonella
parvula DSM 2008]
gi|269093974|gb|ACZ23965.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Veillonella
parvula DSM 2008]
Length = 285
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 72/274 (26%), Positives = 126/274 (45%), Gaps = 16/274 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
++ ++ I + I ++ + L+D +T ++ PD +PAS
Sbjct: 13 KKLVLAITFIGIVFIGAGVAQAAYITPPSTIGEAVVLIDADTKEILFAKNPDKWMHPAST 72
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK++T K L TIS A+ SN + G +TL+ L+ ++V S
Sbjct: 73 TKMVTLLTALEL---KGTQLDELATISSYATSMEESNLGVRVGDQITLEGVLEGMMVASG 129
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--- 173
ND AV +AE++ + KF + M + G + F+N HG+ Q GH++TARD+A++
Sbjct: 130 NDAAVVVAENVSGSVDKFAKDMTRIAAKAGAKNSVFLNPHGLTQKGHHSTARDLAMIAAY 189
Query: 174 -SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVAS 231
Y+++ + TN + + GA+G+KTGFT A+G ++AS
Sbjct: 190 GMKYQMFRDKVANDYYKVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIAS 249
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A + ++I V+L + R + + L GF
Sbjct: 250 ATRKGHTMIVVMLN---DDNRWEEAVQFLDYGFK 280
>gi|146321721|ref|YP_001201432.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 98HAH33]
gi|145692527|gb|ABP93032.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 98HAH33]
gi|292559140|gb|ADE32141.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus suis GZ1]
Length = 415
Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats.
Identities = 62/356 (17%), Positives = 137/356 (38%), Gaps = 31/356 (8%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ P L+ + + ++ ++G ++ E + + AS++K ++ Y+V+ L
Sbjct: 15 AVFLTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASISKTLSIYLVYEALA 74
Query: 71 EKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+ + L T + IS ++ + ++ + L ++ S+N +A+AE +
Sbjct: 75 KGEITLDTMVDISDYPYSLTSNTELSNVNLDERSYSVRDLLNASLITSSNSAIIALAEKI 134
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAIL 173
+E FV M + G++ T +N G+ + +A D+AI+
Sbjct: 135 AGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDVAII 194
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIV 229
+ R+ D+PQ + + + G Y +TN + G DG+KTG + ++G + +
Sbjct: 195 ARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFL 254
Query: 230 ASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIK------D 279
A+ Q +I V+L A R + L++ + N + +
Sbjct: 255 ATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSLVTLVKKSEAFGDSKIK 314
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ Q+ + D + + TL+ K
Sbjct: 315 VFNGEKETSPVVAAADLTVVQRNQTDNVPTATFTTDIKEIDAPLKAGTLVSKLQLK 370
>gi|269925806|ref|YP_003322429.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermobaculum terrenum
ATCC BAA-798]
gi|269789466|gb|ACZ41607.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermobaculum terrenum
ATCC BAA-798]
Length = 334
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 71/303 (23%), Positives = 120/303 (39%), Gaps = 36/303 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIA-----------ETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
FL++IA ++ ++ ++D TG ++ P+
Sbjct: 21 FLLLIAGIIVPISTANAALPASNAVVLPYPEPEITAKSALVMDRRTGKILWAYKPNKKLA 80
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
AS K+MTA + + I + S + + G +TL + LK +
Sbjct: 81 MASTAKMMTAILALQYAD-----PNEVIKVYPR-DLVGGSTAYLRAGEKLTLTDLLKAAL 134
Query: 113 VKSANDIAVAIAESLCKTE---------KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S ND AV IA+ + + + FV MN + LGL T F +G G
Sbjct: 135 IPSGNDAAVTIADYVGRKYLGGVGDNGIQVFVDEMNAKAHELGLDHTVFRTPNGFDAPGQ 194
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-------KKYPNTNWAVGTFLGADGM 216
Y+TA D+A L + + + I +TN + + G G+
Sbjct: 195 YSTALDLAKLGRELLDNPLLSSIVGTYRTRVIGHLGGKPVYHTLVSTNDLLPIYPGMQGI 254
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
KTG T A+G N+V+ +G+ LIAV+LG+ D R + ++L F + + + I I
Sbjct: 255 KTGTTPAAGENLVSYVKRGNIELIAVVLGSQD---RFADTRAILDWMFSSYSLAESILPI 311
Query: 277 IKD 279
Sbjct: 312 TSP 314
>gi|291547442|emb|CBL20550.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
Length = 429
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 73/263 (27%), Positives = 117/263 (44%), Gaps = 18/263 (6%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ L+D NT V+ D PAS+TK++T + T I
Sbjct: 78 PKGPGIEAQAAVLMDVNTEAVLYSKNADTQLYPASITKILTTLLACEN-----LNAKTNI 132
Query: 81 TISKN---ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
T+S+ + S+ G T D AL ++++SAN+++VAIAE + + KKF +
Sbjct: 133 TVSEKASTSVTAGDSSIYAAPGEKFTRDQALMAVMLQSANEMSVAIAEEVSGSVKKFAEL 192
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD------FPQYMHYFQIK 191
MN +K G THF N +G+ HYTTA DMA ++ + + +
Sbjct: 193 MNWRAKLFGCKNTHFNNPNGLPDENHYTTASDMAKIAKSAWLNPLFRRYCTKRYYEIPPT 252
Query: 192 GLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ ++ N + + + G G KTG+T ASG +V +G+ +L+AVIL +
Sbjct: 253 NKFAEARQLLNHHKMMKNGEYYYEGVRGGKTGYTDASGNTLVTYCKRGNITLVAVILNST 312
Query: 248 DRNTRNKVSASLLSMGFYNKTDR 270
+ASL + GF N
Sbjct: 313 SAANAYSDTASLFNYGFENFEKV 335
>gi|229170094|ref|ZP_04297784.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
gi|228613378|gb|EEK70513.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
Length = 425
Score = 142 bits (358), Expect = 7e-32, Method: Composition-based stats.
Identities = 81/332 (24%), Positives = 131/332 (39%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T +TIS A E +N
Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVTISDYAYEVSRNNEFSN 104
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS I T +P+ + + +
Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 224
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW ++ GADG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 225 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 284
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S +L+ GF N +K K N I +++ P V T + Y
Sbjct: 285 ERFTESRALIEYGFNNFEKQKLKVDKNNKISVVKGKEDYVTVAPEKEVTVVTAKGNKAPY 344
Query: 307 NTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K +K + + + +
Sbjct: 345 KISAEADKSLAEDGHLVAPIKKDAKVGSIVLE 376
>gi|226325575|ref|ZP_03801093.1| hypothetical protein COPCOM_03380 [Coprococcus comes ATCC 27758]
gi|225206058|gb|EEG88412.1| hypothetical protein COPCOM_03380 [Coprococcus comes ATCC 27758]
Length = 472
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 73/301 (24%), Positives = 122/301 (40%), Gaps = 22/301 (7%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ SN +++ +G ++ D PAS+TK++TA V
Sbjct: 62 IASNELENWPEGPATYGEAGIVMEAKSGAILYAKNIDGKAYPASITKILTALVALEN--- 118
Query: 72 KKAMLTTPITI---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
L ITI S + + G ++L++AL L++ SAN++A AIAE++
Sbjct: 119 --GNLDDKITITQNSVDCVAEGDAYIGMIAGEEISLNDALHALLMASANEVAYAIAENVG 176
Query: 129 K-TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
FV MN +K LG + F N +G+ HYTTARDMA+++ + + ++
Sbjct: 177 GLGYDGFVAKMNERAKELGAVNSDFENPNGLNAQNHYTTARDMALITQELLENHEEFKTI 236
Query: 188 FQIKGLEIKGKKYPNTNWAV------------GTFLGADGMKTGFTCASGFNIVASAIQG 235
Q + I N + KTG+T + +V+ A
Sbjct: 237 AQTQQYTIGATNLVNQARTFQQSDMMFYEGNDYYYPKTIAGKTGYTDEALNTLVSCAADD 296
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
+ LI+V+L +N S +LL GF N +Y +++ N + E
Sbjct: 297 NLELISVVLKTHGKNV-YPDSINLLEYGFNNFAKYTIADYEDSADFKEIDPNAYVVLPEN 355
Query: 296 V 296
V
Sbjct: 356 V 356
>gi|213857663|ref|ZP_03384634.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
Length = 266
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 73/252 (28%), Positives = 115/252 (45%), Gaps = 14/252 (5%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ +S + Y L+D N+G V+AE D +PASL
Sbjct: 15 LTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 74
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKL 110
TK+MT+YV+ +K K T +T+ +A K G + + ++
Sbjct: 75 TKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRG 134
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDM
Sbjct: 135 INLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDM 194
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIV 229
A++ + D P ++ K G + N N + DG+KTG T +G+N+V
Sbjct: 195 ALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLV 254
Query: 230 ASAIQGDQSLIA 241
ASA +G LI+
Sbjct: 255 ASATEGQMRLIS 266
>gi|19745420|ref|NP_606556.1| penicillin-binding protein [Streptococcus pyogenes MGAS8232]
gi|139473105|ref|YP_001127820.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str.
Manfredo]
gi|19747531|gb|AAL97055.1| putative penicillin-binding protein [Streptococcus pyogenes
MGAS8232]
gi|134271351|emb|CAM29569.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
pyogenes str. Manfredo]
Length = 410
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 69/364 (18%), Positives = 141/364 (38%), Gaps = 29/364 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + +D +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+AI++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAIIARHLLLEFPEVLKLSSKSSTIFDGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKI-- 273
++ +G + VA++++ +I V+L A D K + LL N + I
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQLIEN 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ--MKEAKDKESHFIDFEKITLLKN 331
N +K + + + + + I+ T+ + K + K +L
Sbjct: 302 NKPVKTLSVLDSPEKTVKLVAQNSLFFIKPIHTKTKNTVHITKKSSTMIAPLSKGQVLGR 361
Query: 332 KITK 335
+
Sbjct: 362 ATLQ 365
>gi|325685760|gb|EGD27835.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 428
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 67/339 (19%), Positives = 127/339 (37%), Gaps = 34/339 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT--- 81
+ +D ++G ++ P AS+TKL+T Y+ +K+ K T+
Sbjct: 43 NLDVKAAIAVDADSGQILYAKNATTPRQIASMTKLVTVYLTLQAIKQGKLSWTSTSKPTA 102
Query: 82 -ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I+K + SN T+ + + +++SAN A+ +A+++ + FV+ M
Sbjct: 103 AIAKISQNTEYSNVPLTSSRAYTIKDLYRATLIESANGAAMTLAQAVSGDQVTFVKKMRK 162
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ G+ NA G+ + +A DMAI+ ++ DFP+ +
Sbjct: 163 LLTSWGIKDAKIYNACGLANGNLGSAAYPGVGKDVENEMSATDMAIVCQKLLKDFPEVLQ 222
Query: 187 YFQIKGLEI----KGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQGD 236
I + N NW + L DG+KTG T +G + +
Sbjct: 223 TTSITSATFSSGSTQSQMTNWNWMLKGLSSYYSDLPVDGLKTGTTDKAGACFAGTVKKNG 282
Query: 237 QSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+I V+LGA N +R +A L+ + N T E
Sbjct: 283 HRIITVVLGAKHANSQDPSRFVQTAKLMHYVYQNYTAVTLKKGSSISGANTVKVPEGKET 342
Query: 293 SEEVCTTQKEIINYN--TQMKEAKDKESHFIDFEKITLL 329
S +V + I ++++ + K + +K + +
Sbjct: 343 SSKVVLDKTVTIWAKQGSKLQTSLSKTTVSAPVKKGSKV 381
>gi|254504922|ref|ZP_05117073.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
DFL-11]
gi|222440993|gb|EEE47672.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
DFL-11]
Length = 374
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 69/332 (20%), Positives = 122/332 (36%), Gaps = 12/332 (3%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
M + I + T K P L + +G V+ D P+ P +L K+MTA VF L
Sbjct: 1 MLLAFAIVGVQAEQLTTKAPKALLYEPASGTVLFAKDADVPFAPGALVKVMTAATVFKAL 60
Query: 70 KEKKAMLTTPITISKNASEY------PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + T+S++A + S +++++ LK L+V + ND A+ +
Sbjct: 61 SDGELTQDQLCTVSEHAWRTGGAPSGRGATMFAAIKSEISVEDLLKGLLVHNGNDSAIIL 120
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE L +E F MN + +G++ ++F N G + TT RD L + + +
Sbjct: 121 AECLDGSETAFADRMNALAAEIGMANSNFGNPTGYEEAVSTTTVRDQVRLGEYLVEEHTE 180
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
F I N N +G DG+ G G++ + S + + +IA +
Sbjct: 181 RYSMFAIPEFTWNNIFQRNKNPLLGEIRNLDGLGGGAHSEDGYSGLGSIDRNGRRIIAAV 240
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF---YQQNLSNEVPNISE---EVC 297
G N R + + + + VP ISE +V
Sbjct: 241 AGLTSDNHRLAALKEIFEGTWEFYAVKTVFTAGETVAEGRVFGGVDGTVPLISEADIDVF 300
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + Y ++ + L
Sbjct: 301 LPRGGTLEYRLRVVYLGPLVAPIAAGTPAGEL 332
>gi|226305499|ref|YP_002765459.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4]
gi|226184616|dbj|BAH32720.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus
erythropolis PR4]
Length = 437
Score = 142 bits (357), Expect = 7e-32, Method: Composition-based stats.
Identities = 66/331 (19%), Positives = 114/331 (34%), Gaps = 29/331 (8%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + L D TG V+A P + PAS K++ A V L T
Sbjct: 106 APPLPADIAASGWVLADAETGEVLAAKDPHGRYRPASTIKMLLALVALDE-----LDLDT 160
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
IT + ++ S KG T ++ L++ S ND A A+A L + M
Sbjct: 161 EITATAEDADAEGSAVGIGKGGKYTNRQLMQGLVMASGNDAAHALARQLGGDAAAVSK-M 219
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK------- 191
N + LG T G+ G ++ D+A++ +
Sbjct: 220 NALAVELGALDTRTATPSGLDGPGMSSSPYDLAVIFHTALQNPTFAGLIHTETVEFPGFP 279
Query: 192 -------GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ G N N + + GA G KTGFT + V +A + + L+ ++
Sbjct: 280 KDPTIPDDQDRPGFTLANDNQLLYNYDGALGGKTGFTDDARHTYVGAAERNGRKLLVTLM 339
Query: 245 GALDRNTR-NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
G + R + +A LL G+ + + ++ + P+++
Sbjct: 340 GGEAKPIRPWEQAARLLDYGYA-----LPASTTVGSLTDRSTDDATPDVTRTPSAAAPGS 394
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
I+ A D ES D I + +
Sbjct: 395 ISAAP---TATDTESDTTDRILIGAVGGVVV 422
>gi|302335720|ref|YP_003800927.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli
DSM 7084]
gi|301319560|gb|ADK68047.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli
DSM 7084]
Length = 383
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 58/267 (21%), Positives = 121/267 (45%), Gaps = 10/267 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L +A+ + + + + + ++D + G+V+A P+ AS+TK+MTA V
Sbjct: 14 LTTFLVAVSPCAYAAETTPQVTEAQSFEIIDQD-GNVLASKDPNRRMAMASITKIMTAMV 72
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
K + +I+ + + T + ++ ++V S ND A+ +A
Sbjct: 73 ALDSGK----SMGDVCSITDVTLPEGAQLAGYTSADAPTFGDLMRTMLVYSGNDAALNVA 128
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
++ TE+ FV+ MN ++ +G+ THF N HG+ + HY+ A D+A++ ++P
Sbjct: 129 YAVAGTEEAFVELMNKKAREIGMEDTHFSNPHGLEEDDHYSCAHDLALMGKYALENYPFI 188
Query: 185 MHYFQIKGLEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ L + + K + +T+ + ++ G G+KTG +G + S+ + L
Sbjct: 189 ARTVMTRRLTVTVGGQQKTFESTDELMDSYGGLCGIKTGK-VEAGTTFLGSSKRHGLQLF 247
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNK 267
+ +LG + R + L+ +
Sbjct: 248 SCVLGCTTDDGRFTDTRILMDWAYDEY 274
>gi|171910636|ref|ZP_02926106.1| D-alanyl-D-alanine carboxypeptidase [Verrucomicrobium spinosum DSM
4136]
Length = 373
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 71/248 (28%), Positives = 107/248 (43%), Gaps = 10/248 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
A + ++D TG V+ E D AS KL+TA ++ L +T
Sbjct: 131 PAPKVQAERVIVVDAGTGEVLFEKNADRKAPVASTQKLLTALLLTE-----DGNLDQILT 185
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ + ++ P K G L L+VKS+NDIA A+A T +FV+ MN
Sbjct: 186 VEPDDTKCAPVRLGIKAGEQYPRRQLLTALLVKSSNDIAQALARDNAGTMDEFVKKMNAR 245
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAI----LSWRIKTDFPQYMHYFQIKGLEIKG 197
+ LG+ T F+N HG+ G Y+TARDMA + F K +
Sbjct: 246 AAELGMKDTRFLNPHGLPADGQYSTARDMARVALTVDAVPDIRRMISTKSFVFKKNDGSW 305
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
NTN + + DGMKTG+ A+G+ +++S + + I V+L + K S
Sbjct: 306 INLENTNRVLRNYAFCDGMKTGYAQAAGYCLISSGEKDNHRRIVVVL-SDTSQAVWKDSQ 364
Query: 258 SLLSMGFY 265
SLL
Sbjct: 365 SLLEWSLK 372
>gi|262370309|ref|ZP_06063635.1| penicillin-binding protein 6B [Acinetobacter johnsonii SH046]
gi|262314651|gb|EEY95692.1| penicillin-binding protein 6B [Acinetobacter johnsonii SH046]
Length = 436
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 79/314 (25%), Positives = 144/314 (45%), Gaps = 14/314 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ + IA + ET + +T+ D+ +G VIAE+ PAS
Sbjct: 1 MKAVIYFIATLFALCSSFTQAALLNIVPETVEAQAWTVFDSQSGQVIAEHNSHVQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ + K + +T + + + S K+G +++D L L+V
Sbjct: 61 LTKMMVAYIALKEINAGKLNKSEILTATPVVSTVMWDESQMYLKQGEQISVDQLLAGLVV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + FV MN +K LG++ THF N G+ HY+TA D+A+L
Sbjct: 121 MSANDAAVTLAERISGDIPNFVARMNQEAKALGMTETHFQNPAGITMPEHYSTAHDLALL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + P Y++Y + + + + TN + DG+KTG+T A+G+N+ +A
Sbjct: 181 GQALVNETPDYLYYSKQQSFSYNQRFHRATNVLLKQDPTVDGLKTGYTKAAGYNLALTAN 240
Query: 234 Q-------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ ++ L+ ++LG R +V+ +L+++ + + + +
Sbjct: 241 RPTMNPDNPNRRLVVIVLGTESATKRAEVAHNLMNLSYTYTRNEVALKDKQIIAELPVVK 300
Query: 287 NEVPNISEEVCTTQ 300
+ + E +
Sbjct: 301 STLKMFKVESKQPK 314
>gi|323483957|ref|ZP_08089330.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
WAL-14163]
gi|323693446|ref|ZP_08107657.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
WAL-14673]
gi|323402673|gb|EGA94998.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
WAL-14163]
gi|323502501|gb|EGB18352.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
WAL-14673]
Length = 431
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 122/344 (35%), Gaps = 36/344 (10%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
L+D +TG ++ AS TK+MT + +
Sbjct: 64 AGPKLCAQSAVLMDASTGRILYGKEETIKRPMASTTKIMTCILALEQ-----GNPEDMVE 118
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
IS A+ P + G L + L L+++S ND AVA+AE + T + F + MN
Sbjct: 119 ISSYAASMPDVQLNIRAGEKYRLQDLLYSLMLESHNDSAVAVAEHIGGTVEGFAEMMNQK 178
Query: 142 SKNLGLSATHFMNAHGVVQHG------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
++++G + T F+ +G+ H TTA D+A + P+ + +I
Sbjct: 179 ARDIGCTDTCFVTPNGLDGTRKADGEPHSTTAADLARIMRYCVEQSPKSREFLEITRTAS 238
Query: 196 KGKK---------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ N N + A KTGFT +G+ VA+ + D+ +LG
Sbjct: 239 RTITDESGKRSFYLGNHNALLSMMPEALSGKTGFTGNAGYCYVAALKKDDKEFTVALLGC 298
Query: 247 ---LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ--- 300
+ + + + F + + + + + + +C +
Sbjct: 299 GWPPHKTYKWEDMRKIAGFAFDSYDYYEIFEKNKTFPSLKIIDGKKDEVPLSLCLGEQDQ 358
Query: 301 ------KEIINYNTQMKEAKDKESHFIDFEKIT----LLKNKIT 334
+E + + + K+ ++ + + N++
Sbjct: 359 TLKVLMREDETTDIRYEYPKELKAPVKAGTPVGSASYYVGNELV 402
>gi|257869614|ref|ZP_05649267.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus gallinarum EG2]
gi|257803778|gb|EEV32600.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus gallinarum EG2]
Length = 444
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 69/363 (19%), Positives = 131/363 (36%), Gaps = 43/363 (11%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + +D +TG ++ + + P AS+TK+++ Y+V +KE K
Sbjct: 33 TTFTAEEIKNFSIDAKAAFSVDFDTGKILYDQEGETPMGIASVTKIISLYLVAEQVKEGK 92
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT--- 130
PI IS+ AS+ + + +K L S A A +L +
Sbjct: 93 LTWEDPIEISQYASDLSVTPDLSNVPLHRDVQYTVKDLYEASYIQSANAAVVALAEKIAG 152
Query: 131 -EKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYTTARDMAILSW 175
E FV M + G++ +NA G+ + +A+D+AI++
Sbjct: 153 SEPAFVDQMKDKLTEWGITDAKIVNASGLNNTYLGENLYPGSTSTDENELSAKDVAIVAR 212
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTCASGF 226
+ DFP+ + Y N NW + F G DG+KTG T +G
Sbjct: 213 HLLQDFPEVLEVTSTVTKTFGEGSYSPVEMVNWNWMLPGFINAKDGVDGLKTGTTDLAGA 272
Query: 227 NIVASAIQGDQSLIAVILG----ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK---- 278
V +A++ Q +I V+L A + + R + L+ F ++ +
Sbjct: 273 CFVGTAVRDGQRIITVVLNVNGHAENPSVRFTETGKLMDYSFDAWEQVPILSAGDQLADT 332
Query: 279 ---DFYQQNLSNEVPNISEEVCTTQKE---IINYNTQMKEAK--DKESHFIDFEKITLLK 330
+ +++ ++ ++ T + K ++E+ K T L
Sbjct: 333 KTVAVKNGKELTVPIAVKKDLSVWVRKDMDPKDFTTTIDYNKTMNEETVSAPVAKATNLG 392
Query: 331 NKI 333
Sbjct: 393 KVT 395
>gi|253578829|ref|ZP_04856100.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849772|gb|EES77731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 421
Score = 142 bits (357), Expect = 8e-32, Method: Composition-based stats.
Identities = 70/350 (20%), Positives = 132/350 (37%), Gaps = 35/350 (10%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P L+D +G V+ E + P AS TK++T V
Sbjct: 47 MTPVAEEPAELYALSAVLMDGESGRVLYEKDGERPLANASTTKVLTCIVALENSPG---- 102
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ +S+NA+ P +KG L++ L L++KS ND AVAIAE + + F
Sbjct: 103 -DDYVQVSQNAASQPEVKLGLQKGEQYYLEDLLYSLMLKSHNDTAVAIAEHCGGSVEGFA 161
Query: 136 QHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ +N +K +G T+F+ +G+ H+TTA+D+A++ + ++H Q +
Sbjct: 162 RMLNRKAKQIGCKNTYFITPNGLDAEDENGKHHTTAKDLALIMRYAIKN-ETFLHIAQTR 220
Query: 192 GLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ N N + G KTG+T +G+ V + + ++ I +LG
Sbjct: 221 DYTFSEITGKRTFSVHNANAFLDMRDGVLAGKTGYTSQAGYCYVCAWEKEGKTFIVSLLG 280
Query: 246 ALDRNT---RNKVSASLLSMGFYNKTDRKKINYIIK-DFYQQNLSNEVPNISEEVCT--- 298
N + + LL G YN + + +I ++
Sbjct: 281 CGWPNHKTYKWSDTEKLLDFGDYNYEYETYWKEPQTGKILVTDGVEDDQDIGTKIYLRGK 340
Query: 299 ------------TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
K+ +++ + + + EK+ + + K
Sbjct: 341 CSVTAYDREKEVLLKKGETVICKIEIPQKVSAPVLKGEKLGRIAYYLDGK 390
>gi|187918466|ref|YP_001884029.1| D-alanyl-D-alanine carboxypeptidase [Borrelia hermsii DAH]
gi|119861314|gb|AAX17109.1| D-alanyl-D-alanine carboxypeptidase [Borrelia hermsii DAH]
Length = 316
Score = 142 bits (357), Expect = 9e-32, Method: Composition-based stats.
Identities = 88/315 (27%), Positives = 132/315 (41%), Gaps = 33/315 (10%)
Query: 1 MRQFLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+ I++ +L +IF F T L+D +T + P+ + P
Sbjct: 1 MKIVFTILSFLILFSIFGKLFSIDLFDIERVTEDAKSVVLIDYDTKRIFYAKNPNLVFPP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNALK 109
ASLTKL+T Y ++K L T + IS AS Y S ++G + + LK
Sbjct: 61 ASLTKLVTIYTALVEARKKNIDLKTIVPISSAASYYNLPLGSSLMFLEEGHKVNFEELLK 120
Query: 110 LLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L++ S ND A+AIAE + FV MN NLGL +F++ G T A
Sbjct: 121 GLVISSGNDAAIAIAEFIVGKNLSNFVNLMNINVLNLGLVNMNFVDTSGYCNGNQIT-AL 179
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGK--------------KYPNTNWAVGTFLGAD 214
+MA+ + +F + +K K N N + + AD
Sbjct: 180 EMALFARTYIEEFEFMLAIHSLKDFIYPRSENLGNTSSSKMLNLKQENRNVLIFNYPYAD 239
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILG------ALDRNTRNKVSASLLSMGFYNKT 268
G+KTG+ SG N+VA+A + D LIAV+LG ++ R ++ L GF N +
Sbjct: 240 GLKTGYIKTSGLNLVATAKKDDIRLIAVVLGVNKGINSVGEKKRALIAQKLFEYGFSNYS 299
Query: 269 DRKKINYIIKDFYQQ 283
I I K Y
Sbjct: 300 RFPFIGKIRKKIYNG 314
>gi|320354992|ref|YP_004196331.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobulbus
propionicus DSM 2032]
gi|320123494|gb|ADW19040.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobulbus
propionicus DSM 2032]
Length = 422
Score = 142 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 62/261 (23%), Positives = 102/261 (39%), Gaps = 8/261 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
I + ++D +G + E D+P PAS K++TA +
Sbjct: 164 VAAGDLAPIEKQISARSVMVMDAESGESLFEKMADNPRQPASTIKIVTAMIALK-----S 218
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
I +S+ A++ P S ++ + +++ SAND +VA+AE + +E K
Sbjct: 219 LRNDDVINVSRRAADMPSSKIFLDPNRNYQANDLINAVLLASANDASVALAEKIAGSEDK 278
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F M ++K G T A G+ G +TARD+A L +
Sbjct: 279 FATLMTLSAKMWGAKNTICRTASGLTADGQQSTARDLANLFRFAMQHDEFSRRMRERSIC 338
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
GK N N A+ GA G KTG+T A+ V + Q+++ I+G+
Sbjct: 339 TSYGKTLRNHNKALWRLDGAVGGKTGYTIAARQTYVGQFSREGQTIVVAIMGSES---MW 395
Query: 254 KVSASLLSMGFYNKTDRKKIN 274
L+ GF K +
Sbjct: 396 ADLEKLVDYGFRRKKQEQLAQ 416
>gi|157150235|ref|YP_001450989.1| penicillin-binding protein 3 [Streptococcus gordonii str. Challis
substr. CH1]
gi|157075029|gb|ABV09712.1| penicillin-binding protein 3 [Streptococcus gordonii str. Challis
substr. CH1]
Length = 412
Score = 142 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 72/367 (19%), Positives = 147/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ +V++ + + + + D NTG ++ E P SLTKL
Sbjct: 1 MKKIIVLLFTCLFCSFCTLVSADDFDVAAKNAIAFDVNTGKILYEKEATTPVPIGSLTKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
++AY+V+ +K +K + + + IS+ A + ++ + +++ L+ ++ +A
Sbjct: 61 LSAYLVYDAIKAEKITMDSQVEISEYALKLTTNYDISNLPLDKGSYSVEELLEASLIANA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N +A+AE + +EKKFV M K G+S +N+ G+
Sbjct: 121 NSATIALAEKIAGSEKKFVDLMKAKLKEWGISDAKIVNSTGLNNSHLGDNIYPNSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A DMA++S+ + D+PQ ++ + G + ++N+ + G DG+KT
Sbjct: 181 NQLSAYDMALISYHLIKDYPQVLNITEKTSFNFDGLEVNSSNYMLKDMPSYRKGVDGLKT 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKIN 274
G + G + +ASA + D LI V+L + +AS++ N
Sbjct: 241 GISDQGGLSFIASANERDMRLITVVLNVENAEEDIKALFLATASIMDYIANNFVVTTLAE 300
Query: 275 YIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ S ++ Q+ + ++ K+K+ T
Sbjct: 301 KGTPYEDSHISVINGSEDQIKVVASNDLNIIQRIGSDSEPKVTFKKNKQEFKAPLAAHTP 360
Query: 329 LKNKITK 335
+ K
Sbjct: 361 IGTLSYK 367
>gi|94989757|ref|YP_597857.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS10270]
gi|94543265|gb|ABF33313.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS10270]
Length = 410
Score = 142 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 69/364 (18%), Positives = 141/364 (38%), Gaps = 29/364 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + +D +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAERIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+AI++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKI-- 273
++ +G + VA++++ +I V+L A D K + LL N + I
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQLIEN 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ--MKEAKDKESHFIDFEKITLLKN 331
N +K + + + + + I+ T+ + K + K +L
Sbjct: 302 NKPVKTLSVLDSPEKTVKLVAQNSLFFIKPIHTKTKNTVHITKKSSTMIAPLSKGQVLGR 361
Query: 332 KITK 335
+
Sbjct: 362 ATLQ 365
>gi|300814763|ref|ZP_07095011.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300511150|gb|EFK38402.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 446
Score = 142 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 73/320 (22%), Positives = 136/320 (42%), Gaps = 17/320 (5%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
Y L D +G ++ D AS +KL++ +VVF +K+ + +TI + +S
Sbjct: 83 SKSYLLGDYQSGKILEAYNIDEVRPMASTSKLVSIFVVFDKIKDGTISKSDELTIDRESS 142
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
S K+ MT+D+ +K +V S ND A+A+ + + + F MN K+LGL
Sbjct: 143 ILGGSTFKLKENDKMTVDDLIKASMVVSGNDAITALAKHISGSVEAFSVLMNKKCKDLGL 202
Query: 148 SATHFMNAHGVVQH----GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--P 201
H +N G+ + + T R+M ILS + +P+ ++Y + L+ + + +
Sbjct: 203 KNAHMVNPTGLTNYAIEDYNKMTTREMFILSCELIKYYPEILNYTKEAYLKDEDRNFLEY 262
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-------SLIAVILGALDRNTRNK 254
NTN +G DG+KTG+T ASG ++++ ++ L+ ++ G R
Sbjct: 263 NTNPILGIVPEIDGLKTGYTNASGRTVISTGLKKGIEGKSKDLRLVGIVTGCNGDWQRYV 322
Query: 255 VSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
L+S GF N + + I + + N +
Sbjct: 323 AIKRLMSKGFDNYEYTIFGTESKPIQNINVENAQDAQTPVFIKSKGYALVNKKENIKKDI 382
Query: 311 KEAKDKESHFIDFEKITLLK 330
K + ++ +K+ +K
Sbjct: 383 KIISELKAPIEAGKKVGTIK 402
>gi|145225445|ref|YP_001136123.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum
PYR-GCK]
gi|315445798|ref|YP_004078677.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
gi|145217931|gb|ABP47335.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum
PYR-GCK]
gi|315264101|gb|ADU00843.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
Length = 407
Score = 142 bits (356), Expect = 9e-32, Method: Composition-based stats.
Identities = 60/297 (20%), Positives = 105/297 (35%), Gaps = 11/297 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + + D ++G VIA P PAS+ K++TA
Sbjct: 80 VITAPGTPPVPGDVSAEAWLVADLDSGDVIAARDPHGRHRPASIIKVLTAMQALR----- 134
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + + + +G T+++ L L++ S ND A A+A + +
Sbjct: 135 DLPLMKTVPGTPEDAAQEGTKVGVGEGGVYTVNDLLHGLLMYSGNDAAHALAMQMGGMDT 194
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----PQYMHYF 188
+ +N ++ LG T G+ G T+ DM + +
Sbjct: 195 ALNK-INVLAQKLGARDTRVATPSGLDGPGMSTSVYDMGLFYRYAWHNPVFADIVATRAT 253
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GAL 247
Q G E G N N + + GA G KTG+T +G V +A + + L+AV++ G
Sbjct: 254 QFPGREGAGYPIENDNKLLANYPGALGGKTGYTDDAGQTFVGAAERDGRRLVAVLMRGTR 313
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
+ +A LL GF K I D + + +
Sbjct: 314 QPIAPWEQAARLLDYGFATAPGTKVGTLIEPDPSLGVDRADPAVAALTKTNANANAV 370
>gi|229550853|ref|ZP_04439578.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus rhamnosus
LMS2-1]
gi|258538436|ref|YP_003172935.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus Lc
705]
gi|229315803|gb|EEN81776.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus rhamnosus
LMS2-1]
gi|257150112|emb|CAR89084.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus Lc
705]
Length = 436
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/387 (15%), Positives = 123/387 (31%), Gaps = 55/387 (14%)
Query: 1 MRQFLVIIAMAMLSNIF------------PFLSIAETNKLPYYTLLDTNTGHVIAENYPD 48
M++ L + AM++ + S ++ TG V+
Sbjct: 1 MKKLLRGLVAAMVAVLMIGGAAPAASVAAAESSDTNLVNAKAAVAIEPTTGKVLYAKNAS 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TK+++ +V +K K +T+ ++ ++
Sbjct: 61 TVLPIASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIWTISQDRDLSNVPLRRDGSYSV 120
Query: 109 KLLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------ 158
+ L S A A ++ +++KFV M+ K+ G++ +N G+
Sbjct: 121 RELYDASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLKSWGITDAKIVNVTGLNNSQLK 180
Query: 159 --------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW 205
+ +A+DMA ++ + D P+ + I + N +W
Sbjct: 181 DAKVPGTGDNAENEMSAKDMAQVAQHLIKDHPEVLKTTSIAKQTFRKGTDDAINMENWDW 240
Query: 206 A------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSA 257
L DG+KTG + A+G + + +I V+L A + R +
Sbjct: 241 MLKGLVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVVLHANGDAKTRRFDETK 300
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNE---------VPNISEEVCTT---QKEIIN 305
L++ N N ++ P+ K+ +
Sbjct: 301 KLMTHVLENWKTITLANAGQSIKGYSKVNVNRGASRTTPIAPSAKAVAVVPADASKKTLK 360
Query: 306 YNTQMKEAKDKESHFIDFEKITLLKNK 332
Y + K + +K T + N
Sbjct: 361 YTYTPAKGVKKNTIEAPVKKGTTIGNL 387
>gi|315650677|ref|ZP_07903733.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
3986]
gi|315487054|gb|EFU77380.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
3986]
Length = 466
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 72/323 (22%), Positives = 137/323 (42%), Gaps = 24/323 (7%)
Query: 4 FLVIIAMAMLSNIFPFLS----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+++++++++S +++ + + +TG + E D + PAS+TK+
Sbjct: 11 LVLVLSISVISFAPEYMAVYADTKPDISAQGAAVYNADTGEFLYEKNGDKQFYPASITKI 70
Query: 60 MTAYVVFSFLKEKKAMLTTPITISK---NASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
MT + L IT S+ E ++ G TM++ +AL +++ SA
Sbjct: 71 MTGLLTVEQA-----NLDDTITFSRSATTNLESGSTSLGVVAGDTMSVRDALYGMMLASA 125
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
N+++ +AE + + F MNN +K LG + T+F+N +G+ H TTA+DMA+++
Sbjct: 126 NEVSNGLAEHVGGSVAGFANMMNNRAKELGATHTNFVNPNGLNNQNHVTTAKDMALIAAA 185
Query: 177 IKTDFPQY-------MHYFQIKGLEIKG--KKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ + K K + ++ G G KTG+T ++G
Sbjct: 186 AFRNPTFRAVAGASSYSFPATKSKPTPKLIKMHHKMVTGEISYAGVIGGKTGYTKSAGNT 245
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLS 286
+V +A + LI V+L T + LL GF D + ++
Sbjct: 246 LVTAAERNGVRLIVVVLKCNG--THYTDTRKLLDYGFSIASKDTGRAVAKKQEAAPAKKQ 303
Query: 287 NEVPNISEEVCTTQKEIINYNTQ 309
P +EV T+K+ T+
Sbjct: 304 EVAPVKKQEVAVTKKQEAAPKTE 326
>gi|160893432|ref|ZP_02074217.1| hypothetical protein CLOL250_00982 [Clostridium sp. L2-50]
gi|156864827|gb|EDO58258.1| hypothetical protein CLOL250_00982 [Clostridium sp. L2-50]
Length = 533
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 70/326 (21%), Positives = 138/326 (42%), Gaps = 28/326 (8%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
A Y +LD NTG+++ + PAS+TKL+T + K LT +T
Sbjct: 91 KAPELASNYAIVLDANTGNILYQKNAFDKQYPASITKLLTFLLAIENTK-----LTDTVT 145
Query: 82 ISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC-KTEKKFVQH 137
+S +A S+ +G +++++AL ++++SAN++A I E + + + F +
Sbjct: 146 MSHDAVFGIDRGSSHIGLDEGEQISMEDALYGMMLESANEVAWGIGEFVSGGSIEDFAKM 205
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ------------YM 185
MN + LG THF+NA+G+ HYTT DMA+++
Sbjct: 206 MNERAVELGCLGTHFVNANGLPDENHYTTCYDMALITKACLKHDEFRKITGTRNHVIGPT 265
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ + + + K N + + + +G KTG+T + +V + +GD LI V++
Sbjct: 266 NICEEERQLWQHCKMTNPD-SKYYYEYCEGGKTGYTNDALNTLVTWSKKGDTELICVLMN 324
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE------VPNISEEVCTT 299
S ++ F N + + + D Q + + + + + ++
Sbjct: 325 CNGAANTYTDSKAIYEYCFRNYSLQTPLADYTFDSTQTSQTLDYLNSYYKADSASDITLQ 384
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEK 325
+ N + K ++ I++ K
Sbjct: 385 IDKDYKLNFNKNDDIKKLTYSIEYNK 410
>gi|262283277|ref|ZP_06061043.1| penicillin-binding protein 3 [Streptococcus sp. 2_1_36FAA]
gi|262260768|gb|EEY79468.1| penicillin-binding protein 3 [Streptococcus sp. 2_1_36FAA]
Length = 412
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 73/367 (19%), Positives = 147/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ +V++ + + + P + + D NTG ++ E P SLTKL
Sbjct: 1 MKKIIVLLFICLFCSFCPLVSADDFDVAAKNAIAFDLNTGKILYEKEATSPVPIGSLTKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNA---SEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
++AY+V+ +K +K + + + IS+ A + ++ + +++ L+ ++ +A
Sbjct: 61 LSAYLVYDAIKAEKITMDSQVEISEYALKLTTNYDISNLPLDKGSYSVEELLEASLIANA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N +A+AE + +EKKFV M K G+S +N+ G+
Sbjct: 121 NSATIALAEKISGSEKKFVDLMKAKLKEWGISDAKIVNSTGLNNSHLGDNIYPNSKKDEE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A DMA++S+ + D+PQ ++ + G + ++N+ + G DG+K
Sbjct: 181 NQLSAYDMALISYHLIKDYPQVLNITEKTSFNFDGLEVNSSNYMLKDMPSYRKGVDGLKI 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASLLSMGFYNKTDRKKIN 274
G + G + +ASA + D LI V+L + +AS++ N
Sbjct: 241 GISDQGGLSFIASANERDMRLITVVLNVENAEEDIKALFLATASVMDYIANNFVVTTLAE 300
Query: 275 YIIK------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
N S + Q+ + ++ K+K+ T
Sbjct: 301 KGTPYEDSHISIINGNEDQIKAIASNNLNIIQRIGSDLEPKVTFKKNKQEFKAPLAAHTP 360
Query: 329 LKNKITK 335
+ K
Sbjct: 361 IGTLSYK 367
>gi|146319524|ref|YP_001199236.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 05ZYH33]
gi|145690330|gb|ABP90836.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus suis 05ZYH33]
Length = 415
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/356 (17%), Positives = 137/356 (38%), Gaps = 31/356 (8%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ P L+ + + ++ ++G ++ E + + AS++K ++ Y+V+ L
Sbjct: 15 AVFLTSTPILAEDFSVAAKHAIAVEVSSGKILYEQDAETKASIASISKTLSIYLVYEALA 74
Query: 71 EKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+ + L T + IS ++ + ++ + L ++ S+N +A+AE +
Sbjct: 75 KGEITLNTMVDISDYPYSLTSNTELSNVNLDERSYSVRDLLNASLITSSNSAIIALAEKI 134
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAIL 173
+E FV M + G++ T +N G+ + +A D+AI+
Sbjct: 135 AGSEAAFVDRMKAKVQEWGITDTKIVNVSGLDNTDLGENIYPGSSPEDVNMFSALDVAII 194
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIV 229
+ R+ D+PQ + + + G Y +TN + G DG+KTG + ++G + +
Sbjct: 195 ARRLILDYPQVLDITSLNAYDFGGYTYYSTNQMLSDGTHARGGVDGLKTGTSNSAGSSFL 254
Query: 230 ASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIK------D 279
A+ Q +I V+L A R + L++ + N + +
Sbjct: 255 ATTQQAGMRIITVVLNANDGLTSPENRFVATNDLMNYVYSNFSLVTLVKKSEAFGDSKIK 314
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + ++ Q+ + D + + TL+ K
Sbjct: 315 VFNGEKETSPVVAAADLTVVQRNQTDNVPTATFTTDIKEIDAPLKAGTLVSKLQLK 370
>gi|229065037|ref|ZP_04200334.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
gi|228716242|gb|EEL67956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
Length = 425
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 80/332 (24%), Positives = 129/332 (38%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 45 TGKILHEQNPDELLAIASMSKLIVIYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 104
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 105 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 164
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS I T +P+ + + +
Sbjct: 165 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 224
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + GADG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 225 PKPIRMENWNWMLPGAAFAYEGADGLKTGSSDTAGYGFTITATRGDLRLISVIIKTKSMD 284
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S +L+ GF N +K K N I +++ P V T + Y
Sbjct: 285 ERFTESRALIEYGFNNFEKQKLKIDKNNKISVVKGKEDYVTVAPEKEVTVVTAKGSKSPY 344
Query: 307 NTQMKEAKD---KESHFIDFEKITLLKNKITK 335
+ K +K + + + +
Sbjct: 345 KISTEADKSFAEDGHLVAPIKKDAKVGSIVLE 376
>gi|257867724|ref|ZP_05647377.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
EC30]
gi|257874051|ref|ZP_05653704.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
EC10]
gi|257801807|gb|EEV30710.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
EC30]
gi|257808215|gb|EEV37037.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
EC10]
Length = 444
Score = 142 bits (356), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/341 (18%), Positives = 129/341 (37%), Gaps = 46/341 (13%)
Query: 4 FLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPDHPW 51
F+ +A+ + + P +S A + +D +TG V+ + +
Sbjct: 11 FVAALAILFAAVVIPLVSYADDTAMSIEEIQDFSIDAKAAYSIDFDTGKVLYDQDGETAM 70
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS+TK+++ Y+V +++ P+ IS A+ S + + +K L
Sbjct: 71 GIASITKIISLYLVAEQVEQGTIAWDDPVPISDYAANLSVSPNLSNVPLHQDVTYTVKDL 130
Query: 112 IVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------- 160
S A A +L + +E FV M ++ G++ +NA G+
Sbjct: 131 YDASYIQSANAAIVALAELIAGSESAFVDLMQEKVQSWGITDAKIVNASGLNNAYLGENI 190
Query: 161 -------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVG 208
+ +A+D+A+++ + DFP + + + Y N NW +
Sbjct: 191 YPGSTSTDENELSAKDVALIARHLLQDFPDVLEVTSLSTKQFGEGSYSPVEMVNWNWMLP 250
Query: 209 TF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG----ALDRNTRNKVSASLL 260
F G DG+KTG T +G V +A++ Q +I V+L A + + R + L+
Sbjct: 251 GFTNTKDGVDGLKTGTTDMAGACFVGTAVKDGQRIITVVLNVNGHAENPSVRFIETGRLM 310
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301
F + + ++ ++ +E+
Sbjct: 311 DYSFDAWEQVEIL---PENAQLEDTQTVAVKDGKELSVPVA 348
>gi|262172042|ref|ZP_06039720.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451]
gi|261893118|gb|EEY39104.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus MB-451]
Length = 317
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 68/280 (24%), Positives = 121/280 (43%), Gaps = 9/280 (3%)
Query: 64 VVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ +K L + ISKNA S + G+T+ + + + +I++S ND
Sbjct: 1 MIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDAC 60
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + +E FV MN + +LG+ +HF N+HG+ Y+T D+A+L + D
Sbjct: 61 VAMAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRD 120
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+ + + G N N + DG+KTG T +G+N+V+SA +G+ L
Sbjct: 121 VPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRL 180
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE 295
+AV++G + N R S LLS GF + + + + ++
Sbjct: 181 VAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIWMGDKDTVALGVDKD 240
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T + +KE +K ++ +
Sbjct: 241 TYVTLPRGQAKDLTASFVLEKE-LKAPLKKGDVVGTLYYQ 279
>gi|221194412|ref|ZP_03567469.1| D-alanyl-D-alanine carboxypeptidase [Atopobium rimae ATCC 49626]
gi|221185316|gb|EEE17706.1| D-alanyl-D-alanine carboxypeptidase [Atopobium rimae ATCC 49626]
Length = 381
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 70/286 (24%), Positives = 127/286 (44%), Gaps = 18/286 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS--------IAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M + ++++A L+ + E + L D + G+V+ PD
Sbjct: 1 MFLLVAVMSLAPLALGISQYAYAADDTAAEPEITEAQSAILED-DQGNVLWSKDPDRKMG 59
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
AS+TK+MTA V L P I E + + TL L++L+
Sbjct: 60 MASITKVMTAMVALDSG----IDLDKPCNIVSVDLEEGSVLANYSTSEHPTLRELLQVLL 115
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V SAND+A IA ++ +++ F MN + +G++ THF N HG+ HY+TARD+A+
Sbjct: 116 VHSANDVAYNIAINVAGSQEAFADLMNKKAAEIGMTNTHFSNPHGLDADDHYSTARDLAL 175
Query: 173 LSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
++ + +P + + + +P+T+ + T+ G G+KTG + SG
Sbjct: 176 MARYAREHYPFLASTVSMTSVTATVQGEEVTWPSTDKLLSTYPGMLGLKTG-SEDSGTAF 234
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
+ +A + +L + +LG + R + + G+ + T N
Sbjct: 235 LGAARRNGVTLYSCVLGCATDSGRFADTRIMYDWGYAHFTRIPACN 280
>gi|21909750|ref|NP_664018.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
pyogenes MGAS315]
gi|28895132|ref|NP_801482.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
[Streptococcus pyogenes SSI-1]
gi|94987881|ref|YP_595982.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS9429]
gi|21903934|gb|AAM78821.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
pyogenes MGAS315]
gi|28810377|dbj|BAC63315.1| putative penicillin-binding protein (D-alanyl-D-alanine
carboxypeptidase) [Streptococcus pyogenes SSI-1]
gi|94541389|gb|ABF31438.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS9429]
Length = 410
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 69/364 (18%), Positives = 141/364 (38%), Gaps = 29/364 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + +D +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+AI++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKI-- 273
++ +G + VA++++ +I V+L A D K + LL N + I
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQLIEN 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ--MKEAKDKESHFIDFEKITLLKN 331
N +K + + + + + I+ T+ + K + K +L
Sbjct: 302 NKPVKTLSVLDSPEKTVKLVAQNSLFFIKPIHTKTKNTVHITKKSSTMIAPLSKGQVLGR 361
Query: 332 KITK 335
+
Sbjct: 362 ATLQ 365
>gi|325478993|gb|EGC82094.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 403
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 80/357 (22%), Positives = 160/357 (44%), Gaps = 29/357 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE--------TNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
R+F + +++ +F ++ A+ + Y + + TG + E D
Sbjct: 4 RKFRLASLLSIFIFLFTSMAYAKGEGRIVGLDENVSAYLIGNEETGDIYYEKNADEVRPI 63
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYPPSNSTFKKGSTMTLDNALKL 110
ASLTKLMT Y+V ++E K L T + + + + S+ K+ T +++ L+
Sbjct: 64 ASLTKLMTFYLVRDAIEEGKISLDTNVKADKRAEELTSWEYSSLGLKENETYSVEELLQG 123
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---VQHGHYTTA 167
LI S ND A +A+++ +E+ F + MN +K LGL + + NA G+ + ++A
Sbjct: 124 LIAVSGNDCAHLLAKAVSGSEEAFTKKMNEKAKELGLESQKYYNASGIDTEDDKENVSSA 183
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--LGADGMKTGFTCASG 225
RD+ LS + +P ++Y + + I GK + G DG+KTG T +G
Sbjct: 184 RDLYKLSMDLVKKYPDILNYSSMDEVNIPGKGIKKDSTIPLKNEIDGVDGLKTGTTEKAG 243
Query: 226 FNIVASAIQ------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
+ ++ + D + V+LGA +++ R+ V + L+ + K ++
Sbjct: 244 YCLITTLDMKELDGNDDFRCLGVVLGADEKDIRDSVMSDLIYYVSRYYSCEKVLDTNRSV 303
Query: 280 FYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ +S + I +E++ K+ + +T++ K+ +K +L +
Sbjct: 304 ESVEEVSAKQGYIDLYPAEDLTIISKDKKHVSTKINLDKN---IKAPIKKGQVLGSV 357
>gi|189218825|ref|YP_001939466.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum
V4]
gi|189185683|gb|ACD82868.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum
V4]
Length = 241
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 67/247 (27%), Positives = 108/247 (43%), Gaps = 11/247 (4%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L D T V+ D P+ PAS TKLMTA +V+ K + I K + P
Sbjct: 1 MLYDATTHKVLFAKNDDVPFAPASTTKLMTALLVYEKTGFKG-----DVRIKKEDTLVQP 55
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S+ G ++++ ++ L++ S ND A+A+A + + +KFV+ MN +++LG TH
Sbjct: 56 SHVPLIAGEVISVNQLVEELLIGSCNDAALALARACSGSVEKFVEEMNQKAQSLGCVNTH 115
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---GKKYPNTNWAVG 208
F+N HG+ + G YTTARD+ + K + N N +G
Sbjct: 116 FVNPHGLFEPGQYTTARDLMRIFQAAIKIPAINQICQTRKIHFQNGGISRVMYNHNRLLG 175
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
++G KTG+T S A+ + +L +L + D+ + L GF
Sbjct: 176 RYMGMGPAKTGWTRISLHTYAAACERNGHTLYLTLLHSPDK---WYDARLLFDYGFAQLK 232
Query: 269 DRKKINY 275
R
Sbjct: 233 PRYTAEE 239
>gi|254693780|ref|ZP_05155608.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family protein [Brucella
abortus bv. 3 str. Tulya]
Length = 361
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 73/220 (33%), Positives = 115/220 (52%), Gaps = 1/220 (0%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ ++ PASL K+MT Y+ F LK + + ISKNA+ K G T
Sbjct: 2 LGQDDASAQHAPASLAKMMTLYLTFEALKTGRLHWDDALPISKNAASKVRMKLWLKAGDT 61
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-Q 160
++ +A+ +I+ SAND A + E L +E F + M ++ +G+ +T F N G+
Sbjct: 62 ISTRDAVNGMIIVSANDAATVMGEYLAGSEAAFARLMTQRARQIGMKSTIFANPSGLTAN 121
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
TTARDMA+L ++ DFP+ F + +G+ Y N + + G DG+KTG+
Sbjct: 122 VSQLTTARDMAVLGMALRRDFPEEYALFSQRSFTFRGRVYNGHNNLMYRYAGVDGIKTGY 181
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
T SG+N+V+SA ++ L+ V+LGA R+ A LL
Sbjct: 182 TNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLL 221
>gi|229489552|ref|ZP_04383415.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus erythropolis
SK121]
gi|229323649|gb|EEN89407.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus erythropolis
SK121]
Length = 429
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 66/331 (19%), Positives = 115/331 (34%), Gaps = 29/331 (8%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + L D TG V+A P + PAS K++ A V L T
Sbjct: 98 APPLPADIAASGWVLADAETGEVLAAKDPHGRYRPASTIKMLLALVALDE-----LDLDT 152
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
IT + ++ S KG T ++ L++ S ND A A+A L + M
Sbjct: 153 EITATAEDADAEGSAVGIGKGGKYTNRQLMQGLVMASGNDAAHALARQLGGDAAAVSK-M 211
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK------- 191
N + LG T G+ G +++ D+A++ +
Sbjct: 212 NALAAELGALDTRTATPSGLDGPGMSSSSYDLAVIFHTALQNPTFAGLIHTETVEFPGFP 271
Query: 192 -------GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ G N N + + GA G KTGFT + V +A + + L+ ++
Sbjct: 272 KDPTIPDDQDRPGFTLANDNQLLYNYDGALGGKTGFTDDARHTYVGAAERNGRKLLVTLM 331
Query: 245 GALDRNTR-NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
G + R + +A LL G+ + + ++ + P+++
Sbjct: 332 GGEAKPIRPWEQAARLLDYGYA-----LPASTTVGSLTDRSTDDASPDVTRTPSAAAPGS 386
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
I+ A D ES D I + +
Sbjct: 387 ISAAP---TATDAESDTTDRILIGAVGGVVV 414
>gi|291550439|emb|CBL26701.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14]
Length = 452
Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/345 (17%), Positives = 123/345 (35%), Gaps = 35/345 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D ++G ++ AS TK+MT + +T+S
Sbjct: 63 QLYALSAVLMDADSGRILFSKNGQEERAMASTTKIMTCILALESSIMD--SENQIVTVSD 120
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ P + G L + L L+++S ND VAIAE++ + +KF MN ++
Sbjct: 121 QAATQPKVHLGMVAGERFYLKDLLYSLMLESHNDSGVAIAEAVAGSVEKFADLMNQKART 180
Query: 145 LGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----- 195
+G +T+F+ +G+ H+TTA D+A + + + + I E
Sbjct: 181 IGCYSTYFITPNGLDAADSNGIHHTTAEDLARIMRYCIMNSKKQEDFLTITRTETYQFQD 240
Query: 196 ----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ N N + GA KTGFT +G+ V + + +++ I +L N
Sbjct: 241 VEGKRSFSCYNHNAFLNMMDGALSGKTGFTSDAGYCYVGALRRDERTFIVALLACGWPNN 300
Query: 252 ---RNKVSASLLSMGFYNKTDR-----------------KKINYIIKDFYQQNLSNEVPN 291
+ +L++ + + K + I + +
Sbjct: 301 KSYKWSDMRTLMTYALDHYQYKTFEIELPVRQIFINNGIKARSDTIAYPGKNGTKISLTA 360
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
V KE + + ++ ++ ++ + K
Sbjct: 361 NLTPVSFLLKEDETISVDYEIPDQLDAPVRKGMQVGRIRCTLNDK 405
>gi|282883288|ref|ZP_06291884.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus
lacrimalis 315-B]
gi|281296856|gb|EFA89356.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus
lacrimalis 315-B]
Length = 446
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 73/320 (22%), Positives = 136/320 (42%), Gaps = 17/320 (5%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
Y L D +G ++ D AS +KL++ +VVF +K+ + +TI + +S
Sbjct: 83 SKSYLLGDYQSGKILEAYNIDEVRPMASTSKLVSIFVVFDKIKDGTISKSDELTIDRESS 142
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
S K+ MT+D+ +K +V S ND A+A+ + + + F MN K+LGL
Sbjct: 143 LLGGSTFKLKENDKMTVDDLIKASMVVSGNDAITALAKHISGSVEAFSVLMNKKCKDLGL 202
Query: 148 SATHFMNAHGVVQH----GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--P 201
H +N G+ + + T R+M ILS + +P+ ++Y + L+ + + +
Sbjct: 203 KNAHMVNPTGLTNYAIEDYNKMTTREMFILSCELIKYYPEILNYTKEAYLKDEDRNFLEY 262
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-------SLIAVILGALDRNTRNK 254
NTN +G DG+KTG+T ASG ++++ ++ L+ ++ G R
Sbjct: 263 NTNPILGIVPEIDGLKTGYTNASGRTVISTGLKKGIEGKSKDLRLVGIVTGCNGDWQRYV 322
Query: 255 VSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
L+S GF N + + I + + N +
Sbjct: 323 AIKRLMSKGFDNYEYTIFGTESKPIQNINVENAQDAQTPVFIKIKGYALVNKKENIKKDI 382
Query: 311 KEAKDKESHFIDFEKITLLK 330
K + ++ +K+ +K
Sbjct: 383 KIISELKAPIEAGKKVGTIK 402
>gi|50913625|ref|YP_059597.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS10394]
gi|50902699|gb|AAT86414.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS10394]
Length = 410
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 69/364 (18%), Positives = 141/364 (38%), Gaps = 29/364 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + +D +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYMVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+AI++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAIIARHLLLEFPEVLKLSSKSSTIFDGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKI-- 273
++ +G + VA++++ +I V+L A D K + LL N + I
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQLIEN 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ--MKEAKDKESHFIDFEKITLLKN 331
N +K + + + + + I+ T+ + K + K +L
Sbjct: 302 NKPVKTLSVLDSPEKTVKLVAQNSLFFIKPIHTKTKNTVHITKKSSTMIAPLSKGQVLGR 361
Query: 332 KITK 335
+
Sbjct: 362 ATLQ 365
>gi|77409053|ref|ZP_00785771.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
agalactiae COH1]
gi|77172347|gb|EAO75498.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
agalactiae COH1]
Length = 395
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 71/344 (20%), Positives = 135/344 (39%), Gaps = 30/344 (8%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ + + +D ++G ++ E + P ASLTK+MT Y+V+ +
Sbjct: 3 TISAESFNASAKHALAVDLDSGKILYEKDANKPAAIASLTKIMTVYMVYKEIDNGNLKWN 62
Query: 78 TPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
T + IS + +++ + T+ + ++ SAN A+A+AE + TE KF
Sbjct: 63 TKVNISDYPYQLTRESDASNVPLEKRRYTVKQLVDAAMISSANSAAIALAEHISGTESKF 122
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTD 180
V M + G+ +H +NA G+ + +ARD+AI ++ + +
Sbjct: 123 VDKMTAQLEKWGIHDSHLVNASGLNNSMLGNHIYPKSSQNDENKMSARDIAIAAYHLVNE 182
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGD 236
+P + + + N+ + G G+KTG T +G + +A++ +
Sbjct: 183 YPSILKITSKSVAKFDKDIMHSYNYMLPDMPVFRPGITGLKTGTTELAGQSFIATSTESG 242
Query: 237 QSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
L+ VI+ A D+ R + SLL+ + + V +
Sbjct: 243 MRLLTVIMHADKADKDKYARFTATNSLLNYITNTYEPNLVLAKGAA---YKGKEASVRDG 299
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
E+ + Q K + I+F+K L ITKK
Sbjct: 300 KEQSVIAVAKNDLKVVQKKNITKQNQLKINFKK--ELTAPITKK 341
>gi|326201672|ref|ZP_08191543.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
papyrosolvens DSM 2782]
gi|325988272|gb|EGD49097.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
papyrosolvens DSM 2782]
Length = 440
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 86/366 (23%), Positives = 142/366 (38%), Gaps = 36/366 (9%)
Query: 1 MRQFL--VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ L +I++ +L + P Y L+D TG V+ E PD W PAS TK
Sbjct: 1 MKKVLATLIVSFILLFQVTPAFCANLDIDAASYILMDAKTGSVLYEYKPDLKWRPASTTK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ TA V K + M + +S N G M+L+N L L++ SAN+
Sbjct: 61 IATALVALKEGKLDQMMTASNEAVSD--IGVGGMNIGIMPGEQMSLNNLLHALLIVSANE 118
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAIL- 173
A I+E+L + KF+ MN + + G T F N G+ H+++ARD+A++
Sbjct: 119 TANIISENLFNDKTKFLAEMNKFAADAGAKNTTFTNPCGIDEYEKDADHFSSARDLALIA 178
Query: 174 --------SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-----------AD 214
I K N G
Sbjct: 179 KECLKYPLFREIIGQKQLSTLPATNKHKTWNILNNTNKLLGKSFKYGPETGDDRNQYTIT 238
Query: 215 GMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRNTR--NKVSASLLSMGFYNKTDRK 271
G+KTG T +G N ++SA + LI+V+LG ++ R + +LL G+ N + +
Sbjct: 239 GLKTGSTSRAGANFISSAVNKDGLELISVVLGVNNKPNRSVFDFTKTLLKAGYENYSRQM 298
Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK-----ESHFIDFEKI 326
I+ K + + + E + N + + DK + +K
Sbjct: 299 IIDRSTKIQEITVKDAADGDKVDLITNGVIEALLPNDKTQWQLDKKINIRQDVKAPVKKG 358
Query: 327 TLLKNK 332
T+L +
Sbjct: 359 TVLGSI 364
>gi|298244964|ref|ZP_06968770.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
gi|297552445|gb|EFH86310.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
Length = 319
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 15/251 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ L+D GHV+ + + + AS TK+MTA + L IT+
Sbjct: 69 PVLQAKVAYLVDMQNGHVLYDIHGEQAAPMASTTKIMTALIAIQ-----TGNLDQEITVK 123
Query: 84 KNASEYP----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++A + SN+ G TL L L++ S D A+AI+++L + + FV MN
Sbjct: 124 RDAYLHVIELGSSNAGLVPGEQFTLRELLYGLMLPSGGDAAIAISDALAGSPENFVVRMN 183
Query: 140 NTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQIKG-----L 193
+ L L TH+ N G+ HY++A D+ L+ T+
Sbjct: 184 LFASRLHLFQTHYTNVDGLTSEDTHYSSAADLTRLTRYALTNPIFRQIVDTPTYTLPTTK 243
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ + NTN + T+ G G+KTG T +G+ +V A + SLI V+L + D+ R+
Sbjct: 244 QHGPHTWTNTNTLLSTYKGMLGVKTGHTDLAGYCLVFEAQRNGHSLIGVVLNSPDQAIRD 303
Query: 254 KVSASLLSMGF 264
+ + LL+ GF
Sbjct: 304 QDVSKLLNWGF 314
>gi|322381780|ref|ZP_08055734.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321154168|gb|EFX46490.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 386
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 70/267 (26%), Positives = 116/267 (43%), Gaps = 16/267 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L+D ++G ++ D AS TK+MTA + + L+ + + K
Sbjct: 21 STHAEAAALIDVHSGRILYSQSGDKEMRVASTTKIMTAIIAIEQGR-----LSDMVKVGK 75
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NA+ S+ K G M+L N L ++++S ND A+ IAE + + + F MN +
Sbjct: 76 NAAGKEGSSLYLKLGEEMSLHNLLYGMMLRSGNDAAITIAEHIGGSIEGFAYLMNEKASL 135
Query: 145 LGLSATHFMNAHGVVQ---HGHYTTARDMAILSWRIKTDF----PQYMHYFQIKGLEIKG 197
LG++ THF N G+ HY++A DMA L+ + +
Sbjct: 136 LGMAHTHFTNPSGLDDGKEMKHYSSANDMAKLTAYALKNPVFRDIVKTKTKKAPNPNANW 195
Query: 198 -KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ N N + + GADG+KTG+T + +V+SA +G+Q L AV L +
Sbjct: 196 DYSWSNKNKMLNLYEGADGVKTGYTKLAYRCLVSSATRGNQQLAAVTLNDGND---WADH 252
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQ 283
A LL GF ++ +
Sbjct: 253 AKLLDYGFETYPLKQVLQKGETVSGTN 279
>gi|167462338|ref|ZP_02327427.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 395
Score = 141 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 70/267 (26%), Positives = 116/267 (43%), Gaps = 16/267 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L+D ++G ++ D AS TK+MTA + + L+ + + K
Sbjct: 30 STHAEAAALIDVHSGRILYSQSGDKEMRVASTTKIMTAIIAIEQGR-----LSDMVKVGK 84
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
NA+ S+ K G M+L N L ++++S ND A+ IAE + + + F MN +
Sbjct: 85 NAAGKEGSSLYLKLGEEMSLHNLLYGMMLRSGNDAAITIAEHIGGSIEGFAYLMNEKASL 144
Query: 145 LGLSATHFMNAHGVVQ---HGHYTTARDMAILSWRIKTDF----PQYMHYFQIKGLEIKG 197
LG++ THF N G+ HY++A DMA L+ + +
Sbjct: 145 LGMAHTHFTNPSGLDDGKEMKHYSSANDMAKLTAYALKNPVFRDIVKTKTKKAPNPNANW 204
Query: 198 -KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ N N + + GADG+KTG+T + +V+SA +G+Q L AV L +
Sbjct: 205 DYSWSNKNKMLNLYEGADGVKTGYTKLAYRCLVSSATRGNQQLAAVTLNDGND---WADH 261
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQ 283
A LL GF ++ +
Sbjct: 262 AKLLDYGFETYPLKQVLQKGETVSGTN 288
>gi|312199939|ref|YP_004020000.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp.
EuI1c]
gi|311231275|gb|ADP84130.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp.
EuI1c]
Length = 437
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/284 (21%), Positives = 114/284 (40%), Gaps = 12/284 (4%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A L+ S+ + + D +TG ++A D PAS K++TA VV
Sbjct: 61 AALAVGAGATSLPGQLTSAGWLVADADTGQILAAKGADTRDLPASTMKILTALVVLP--- 117
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+T+ ++A + G + + + +++ S ND VA+ +++
Sbjct: 118 --GLAPDRRVTVGRDAVTVDGTKVGLVPGQSYLVRDLATAMLIASGNDATVALVDAV-GG 174
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
V MN + +LG + TH ++ G+ G ++ RD+AIL +
Sbjct: 175 RDAVVARMNALAASLGATDTHAVDPTGLDAPGQLSSVRDLAILGRAAIAQPVISRYLTIP 234
Query: 191 K----GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ + N N +G + G G+K G+T A+ V +A +G ++L+ +L A
Sbjct: 235 RAVLPTPNGGSFEIQNHNLLLGRYPGTLGVKNGYTVAADATYVGAARRGGRTLVVALLRA 294
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
+ +LL GF N + + + +EVP
Sbjct: 295 --APNYAADARALLDWGFANDGVAAPVGMLPAPPPAPTVGDEVP 336
>gi|325679044|ref|ZP_08158638.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus
albus 8]
gi|324109168|gb|EGC03390.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus
albus 8]
Length = 359
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 69/334 (20%), Positives = 119/334 (35%), Gaps = 18/334 (5%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L ++ + +S I + + T V+ E D AS TK+M+A +
Sbjct: 15 LALMLIFSISRINVSAEELPDVSAKAAIVYNGATDEVLFEKNADEQLPMASTTKIMSALI 74
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
V L + A S+ +KG ++L + +++ S ND A A A
Sbjct: 75 VLEQND-----LDERFIVDSQAIMTEGSSMGLQKGDEVSLRDLACGMLLPSGNDAANAAA 129
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--GHYTTARDMAILSWRIKTDFP 182
+ + FV+ MN + +GL THF+ G+ + HY+TARDMA L+ D
Sbjct: 130 VRVAGSVDAFVELMNRRAAEMGLFDTHFVTPSGLDDYTDDHYSTARDMAKLAAEAMKDQN 189
Query: 183 QYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
K + N+N + G G+KTGFT + +V+S ++
Sbjct: 190 FRDICSLQKAKVFFGDPPYDRWLINSNKLLKI-SGITGIKTGFTDKARRCLVSSCMREGC 248
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
LI V L D + +L F + +E+ ++
Sbjct: 249 ELICVTLNDPDD---WRDHMALFDHCFGKVEQMRIRPRNSAVKIPVADGSEIVCEIPDMV 305
Query: 298 TTQKE--IINYNTQMKEAKDKESHFIDFEKITLL 329
T +++ EK+ +
Sbjct: 306 MTMMPETAQKVESRLFLPHFIYRPIKKDEKLGEV 339
>gi|331269468|ref|YP_004395960.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
BKT015925]
gi|329126018|gb|AEB75963.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
BKT015925]
Length = 381
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 67/310 (21%), Positives = 127/310 (40%), Gaps = 15/310 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+D+ T V+ E + AS TK+MT V + L +S
Sbjct: 42 IDARSAIAIDSKTKCVLYEKNAEMLLPIASTTKIMTTLVALKY-----GNLDDKFQVSAK 96
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A+ S +KKG ++ L L L+++S ND A+ IAE L + +KF + MN + +
Sbjct: 97 AASIRGSQVGYKKGESVALKELLYGLMLRSGNDAAITIAEGLSGSVEKFCELMNEYAVEI 156
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSW----RIKTDFPQYMHYFQIKGLEIKGKKYP 201
G +HF + HG+ HY+TA D+A ++ + + + K + Y
Sbjct: 157 GALNSHFESPHGLDSQNHYSTAYDLARITAKAKENELFNKIVGVKDVEAKEYGF-TRSYH 215
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N N + A+G+KTG+T +G +V S D +I V+L R K + +
Sbjct: 216 NINKILYQIPNANGVKTGYTGGAGKCLVTSVKDHDDDIIIVVLNCT---PRWKETGKIYK 272
Query: 262 MGFYNKTDRKKINY--IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N +K + ++ + ++ +++ + + ++ + K+ S+
Sbjct: 273 FVKENYDFKKIASKNQVVDNIVYKDNKKINLISDKDIVVPVGKQEHCEFKVVKPKNIPSN 332
Query: 320 FIDFEKITLL 329
+ +
Sbjct: 333 VYKGMDLGKI 342
>gi|306828006|ref|ZP_07461272.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
ATCC 10782]
gi|304429787|gb|EFM32830.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
ATCC 10782]
Length = 410
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 69/364 (18%), Positives = 141/364 (38%), Gaps = 29/364 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + +D +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHVIAVDLESGKVLYEKDAKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+AI++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAIIARHLLLEFPEVLKLSSKSSTIFDGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKI-- 273
++ +G + VA++++ +I V+L A D K + LL N + I
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQLIEN 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ--MKEAKDKESHFIDFEKITLLKN 331
N +K + + + + + I+ T+ + K + K +L
Sbjct: 302 NKPVKTLSVLDSPEKTVKLVAQNSLFFIKPIHTKTKNTVHITKKSSTMIAPLSKGQVLGR 361
Query: 332 KITK 335
+
Sbjct: 362 ATLQ 365
>gi|225574473|ref|ZP_03783083.1| hypothetical protein RUMHYD_02548 [Blautia hydrogenotrophica DSM
10507]
gi|225038323|gb|EEG48569.1| hypothetical protein RUMHYD_02548 [Blautia hydrogenotrophica DSM
10507]
Length = 409
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/313 (19%), Positives = 119/313 (38%), Gaps = 22/313 (7%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ +N +++ +T ++ D P+S+TK+MT +
Sbjct: 38 IATNSIEGWPQGPDITSNAAVIMEDSTNTILYAKNKDAALYPSSITKIMTTLIALENS-- 95
Query: 72 KKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
L +T+++ + + + + G T T++ L +++ SANDI+ IAE +
Sbjct: 96 ---SLADTVTMTQTGTAASGNGSVSLNAQVGETFTMEQCLYAIMLGSANDISTQIAEQVG 152
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ + FV MN +K+LG + T+F N G+ +TA D+A++ +
Sbjct: 153 GSVENFVTMMNQKAKDLGCTNTNFTNPTGLPDEKQTSTAYDLALIMQAALKNESFQTIAS 212
Query: 189 QIKGL------EIKGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + N + + G G K+G+T ASG + A A +
Sbjct: 213 AMTYTIPATNLTSAERNLTNNFPLSTATSASYYEGTLGGKSGYTEASGSTLAAGASRNGT 272
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
+LI V+L + + +LL GF N + + + + S +
Sbjct: 273 TLICVVL-SGTEQQVPPEAITLLDYGFSNFQTISVTDEL--NTISGGTAVIPSTASADDV 329
Query: 298 TTQKEIINYNTQM 310
T + +
Sbjct: 330 TVENTGTTDDGIS 342
>gi|257876629|ref|ZP_05656282.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
EC20]
gi|257810795|gb|EEV39615.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus casseliflavus
EC20]
Length = 444
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 64/341 (18%), Positives = 128/341 (37%), Gaps = 46/341 (13%)
Query: 4 FLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPDHPW 51
F+ +A+ + P +S A + +D +TG V+ + +
Sbjct: 11 FVAALAILFAAVGIPLVSYADDTAMSIEEIQDFSIDAKAAYSIDFDTGKVLYDQDGETAM 70
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS+TK+++ Y+V +++ P+ IS A+ S + + +K L
Sbjct: 71 GIASITKIISLYLVAEQVEQGTIAWDDPVPISDYAANLSVSPNLSNVPLHQDVTYTVKDL 130
Query: 112 IVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------- 160
S A A +L + +E FV M ++ G++ +NA G+
Sbjct: 131 YDASYIQSANAAIVALAELIAGSESAFVDLMQEKVQSWGITDAKIVNASGLNNAYLGENI 190
Query: 161 -------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVG 208
+ +A+D+A+++ + DFP + + + Y N NW +
Sbjct: 191 YPGSTSTDENELSAKDVALIARHLLQDFPDVLEVTSLSTKQFGEGSYSPVEMVNWNWMLP 250
Query: 209 TF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG----ALDRNTRNKVSASLL 260
F G DG+KTG T +G V +A++ Q +I V+L A + + R + L+
Sbjct: 251 GFTNTKDGVDGLKTGTTDMAGACFVGTAVKDGQRIITVVLNVNGHAENPSVRFIETGRLM 310
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301
F + + ++ ++ +E+
Sbjct: 311 DYSFDAWEQVEIL---PENAQLEDTQTVAVKDGKELSVPVA 348
>gi|52140174|ref|YP_086656.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala
carboxypeptidase) [Bacillus cereus E33L]
gi|51973643|gb|AAU15193.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala
carboxypeptidase) [Bacillus cereus E33L]
Length = 418
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 77/332 (23%), Positives = 125/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S L+ GF N +K K N I +++ P V + Y
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKINKNNTISVVQGKEDQVTVTPEKEITVIAKKGSKDPY 342
Query: 307 NTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPVKKGAKVGSITLE 374
>gi|317056794|ref|YP_004105261.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
albus 7]
gi|315449063|gb|ADU22627.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
albus 7]
Length = 387
Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats.
Identities = 75/344 (21%), Positives = 130/344 (37%), Gaps = 12/344 (3%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK---------LPYYTLLDTNTGHVIAENYPDHPWN 52
+ F+ I+ + + + S AE ++ NTG V+ E
Sbjct: 6 KLFVFILCLILSGCMMSECSFAEKVSVEDMLYAMPAREIIAVECNTGQVLFEKNSCEKTE 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
+ L KLM + LK + LT +T+S NA+ P K ++ + LK +
Sbjct: 66 ISHLAKLMLVLLAAEKLKSGELSLTDTVTVSANANSMPAPQIWLDKNEKISAEELLKAIT 125
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ +AND AVA+AE + + V MN +K L + T + + G+ A +
Sbjct: 126 IGNANDAAVALAEHIFGSTDNAVTQMNRKAKLLDMKLTEYADVCGLDSRTVADAADTAKL 185
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
S +K D I + + N N V T+ G GMK + A+G V +A
Sbjct: 186 ASELVKYDILTDYFKTWIDRVRSGKAELVNLNRLVRTYKGISGMKACSSSAAGECSVVTA 245
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK---INYIIKDFYQQNLSNEV 289
+GD + V+LG DR+ + ++ LL M F + + + + N V
Sbjct: 246 SRGDMEVAVVVLGCTDRSMCDDIAQKLLDMSFDMYSLYTPEISEDMLDDIPVEGGEKNSV 305
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
P E+ + + + ++ E + I
Sbjct: 306 PVTFGELFPVAVPSGSSGSIDISFEKEDILTAPVEMGQICGKLI 349
>gi|75764308|ref|ZP_00743843.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|74488202|gb|EAO51883.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
thuringiensis serovar israelensis ATCC 35646]
Length = 349
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 78/295 (26%), Positives = 124/295 (42%), Gaps = 17/295 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ +G V+ P AS+
Sbjct: 51 MRRICVIITLLIMYASVMPIPTYAKMNSNVSARNAVLMEQQSGRVLYGKAEHEPQKIASI 110
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K +++S A S K G + L++ + L+++S
Sbjct: 111 TKIMTALLAAESGKMK-----EMVSVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 165
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAES+ + FV MN +K +G+ THF N HG+ HY++A DMA+L+
Sbjct: 166 NDAAQVIAESVGGSIDGFVYLMNEKAKEIGMKDTHFSNPHGLDGDGSHYSSAYDMALLTK 225
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV---GTFLGADGMKTGFTCASGFNIVASA 232
+ + F K + YP N + A G KTGFT +G +V +A
Sbjct: 226 YAMGNES-FKKIFGTKTYKSDSWDYPWKNKHKLVTSYYEFATGGKTGFTKKAGRTLVTTA 284
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ LI V L A +L GF K + +
Sbjct: 285 SKDGLDLIVVTLSASSD---WDDHMNLFDKGFERFKQTKVLGQGAIAEINEKKYA 336
>gi|291563035|emb|CBL41851.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SS3/4]
Length = 459
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/261 (26%), Positives = 107/261 (40%), Gaps = 20/261 (7%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
T L D G V+ E D PAS TKLMTA +V L +T S
Sbjct: 93 PTISAEAGILYDVTNGRVLFEKNADEKLAPASTTKLMTALLVLEKA-----NLDDKVTFS 147
Query: 84 K---NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
K E +G +++ ++L L++KSAN++A +AE + + F + MN
Sbjct: 148 KTAVTNLESGAVKIGLVEGDQVSVKDSLYALLLKSANEVANGLAEHVSGSISAFAELMNA 207
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR-------IKTDFPQYMHYFQIK-- 191
+ LG + THF+N +G+ YTT RDMA ++ + D + K
Sbjct: 208 RAAELGCTNTHFVNPNGLNSDQQYTTCRDMAKIAAAAFANKTLCEIDSTLSYKFPATKAA 267
Query: 192 -GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
I + G G KTG+T +G +V + ++AVIL ++
Sbjct: 268 AARTITPGHKMLYPNDSRYYAGIVGGKTGYTSKAGNTLVTCVEKNGVRMVAVIL--KSKS 325
Query: 251 TRNKVSASLLSMGFYNKTDRK 271
T + + +L G+ K
Sbjct: 326 THYEDTKKMLDYGYQYVNTEK 346
>gi|262165190|ref|ZP_06032927.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
gi|262024906|gb|EEY43574.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
Length = 317
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 68/280 (24%), Positives = 121/280 (43%), Gaps = 9/280 (3%)
Query: 64 VVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ +K L + ISKNA S + G+T+ + + + +I++S ND
Sbjct: 1 MIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFIEVGTTVKVSDLNRGIIIQSGNDAC 60
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + +E FV MN + +LG+ +HF N+HG+ Y+T D+A+L + D
Sbjct: 61 VAMAEHVAGSEDAFVDLMNAWASSLGMKDSHFTNSHGLDDPNLYSTPYDLALLGQALIRD 120
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+ + + G N N + DG+KTG T +G+N+V+SA +G+ L
Sbjct: 121 VPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRL 180
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE 295
+AV++G + N R S LLS GF + + + + ++
Sbjct: 181 VAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIWMGDKDTIALGVDKD 240
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T + +KE +K ++ +
Sbjct: 241 TYVTLPRGQAKDLTASFVLEKE-LKAPLKKGDVVGTLYYQ 279
>gi|315652015|ref|ZP_07905016.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
3986]
gi|315485662|gb|EFU76043.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
3986]
Length = 492
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 75/306 (24%), Positives = 130/306 (42%), Gaps = 29/306 (9%)
Query: 1 MRQFLVIIAMAMLS-NIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPWN 52
+++ + + +A+++ I P + A L+D ++G VI +
Sbjct: 13 LKKITLTLFLALITMFILPLKAFAYVDWPENVNVLSEGAILMDADSGAVIYGKNMHEHYY 72
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALK 109
PAS+TK++TA +V L +T S+NA S++ G T+T+ + L
Sbjct: 73 PASITKILTALIVVENC-----NLDDTVTFSRNAVYNVESGSSSAGIDVGDTLTVRDCLY 127
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
++++SAN+ A A+AE + F + MN+ + +LG +HF N G+ HYT+A D
Sbjct: 128 AMLLQSANEAANALAEHTAGSIDAFAKMMNDKAASLGCKDSHFANPSGLNDPEHYTSAYD 187
Query: 170 MAILSWRIKTDFPQ-------YMHYFQIKGLEIKGKKYPNTNWAVG----TFLGADGMKT 218
A++S + Y + + Y + + + A KT
Sbjct: 188 YALISRAAFKNPTVTEIDSATYYNLPPTSRVPTGQTLYSHHSMLRKNSGNYYKNAICGKT 247
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
G+T +G +V A LI V+L T + SLL GF N D K + I
Sbjct: 248 GYTTLAGNTLVTYARTDKIGLITVVLNGN--KTHYIDTQSLLDFGFANFKDIKLKSSSIG 305
Query: 279 DFYQQN 284
++ N
Sbjct: 306 TSFKSN 311
>gi|295108761|emb|CBL22714.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
Length = 412
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 13/262 (4%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A + L+D +G ++ D PAS+TK+MT + L A T
Sbjct: 64 VKAPQIEGESAILVDMLSGTILYSKNADKAQYPASITKIMTGLLGCENLDL-SAKFTMTE 122
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ +++ +E S+ G T++ AL ++++SAN++ +A+AE + KKFV+ MN
Sbjct: 123 SAARSITESNSSSIYADTGEEFTVEQALMAVMLQSANEMTLAVAELTSGSTKKFVEQMNL 182
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY------MHYFQIKGLE 194
++ LG + THF N +G+ HYTTA DMA ++ +F +
Sbjct: 183 KARQLGCTNTHFNNPNGLPDETHYTTAADMAKIARAAWFNFTFRKFVTTGYYEIPPTNKF 242
Query: 195 IKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + N + + + G G KTG+T A+G +V A + L+AV++ N
Sbjct: 243 AETRYLLNHHKMMSGQTYAYDGVLGGKTGYTEAAGNTLVTYAKNDNTYLVAVVM--QSVN 300
Query: 251 TRNKVSASLLSMGFYNKTDRKK 272
+ +LL GF N + K
Sbjct: 301 GAYSDTKALLDYGFNNFSRSKI 322
>gi|224531645|ref|ZP_03672277.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia valaisiana
VS116]
gi|224511110|gb|EEF81516.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia valaisiana
VS116]
Length = 401
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 79/321 (24%), Positives = 127/321 (39%), Gaps = 25/321 (7%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L+D +T ++ P+ + PASLTK++T Y +++ L + IS AS
Sbjct: 40 AKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIKLKNIVPISDAAS 99
Query: 88 EYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
Y +KG + + LK L V S ND A+AIAE + FV MN +
Sbjct: 100 YYNAPLNSSLMFLEKGQIVNFEEILKGLSVSSGNDAAIAIAEFVVGDVNSFVNLMNINAL 159
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----- 198
NLGL HF+ G + TA DMA + F ++ ++
Sbjct: 160 NLGLFNMHFVEPSGYSN-ENKITALDMAFFAKSYIEKFKFMLNIHSLEYFVYPKSKNLGI 218
Query: 199 ---------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG---- 245
K N N + + +DG+KTG+ SG NI+A+A++G++ LIAV+LG
Sbjct: 219 TLSSKFLNLKQKNANLLISEYPYSDGLKTGYIRESGLNIIATALKGERRLIAVVLGVKKG 278
Query: 246 --ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
R ++ +L GF + I + + Y + E +
Sbjct: 279 INGSGEKIRALIAKNLFEYGFNEYSKFPLIVKLQEKVYNGTVDTVALFSKEPFYYVLTKD 338
Query: 304 INYNTQMKEAKDKESHFIDFE 324
+ DK + +
Sbjct: 339 EFDKINISYTVDKLVAPLSGD 359
>gi|216264541|ref|ZP_03436533.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
156a]
gi|224532771|ref|ZP_03673388.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
WI91-23]
gi|226320832|ref|ZP_03796385.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
29805]
gi|215981014|gb|EEC21821.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
156a]
gi|224512389|gb|EEF82773.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
WI91-23]
gi|226233774|gb|EEH32502.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
29805]
Length = 405
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 25/321 (7%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L+D +T ++ P+ + PASLTK++T Y +++ L + + IS +AS
Sbjct: 40 AKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99
Query: 88 EYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
Y +KG + + LK L V S ND ++AIAE + FV MN
Sbjct: 100 YYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVL 159
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---------- 193
NLGL HF+ G + TA DMA F ++ +K
Sbjct: 160 NLGLFNMHFVEPSG-YSSENKITALDMAFFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGT 218
Query: 194 ----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG---- 245
+ K N N + + +DG+KTG+ SG N+VA+A +G++ LIAV+LG
Sbjct: 219 ALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGVEKG 278
Query: 246 --ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
R+ ++ +L GF + I + + Y + E +
Sbjct: 279 INGFGEKMRSSIAKNLFEYGFNKYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYILTKD 338
Query: 304 INYNTQMKEAKDKESHFIDFE 324
+ DK + +
Sbjct: 339 EFDKINISYTVDKLVAPLSGD 359
>gi|269928430|ref|YP_003320751.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter
thermophilus DSM 20745]
gi|269787787|gb|ACZ39929.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter
thermophilus DSM 20745]
Length = 326
Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 65/261 (24%), Positives = 118/261 (45%), Gaps = 16/261 (6%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + ++D +G V+ P ASLTK++TA V
Sbjct: 18 IVLTARPAAARPDVAARNWIVMDGASGDVLDAQEPHQRTAIASLTKMLTALVAVE----- 72
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+A L +T+ + + S++ ++G ++L L L++ S ND A+AIA ++ +
Sbjct: 73 RADLEQVVTVMR-SDLIRGSSARLREGERLSLRTLLYGLLLPSGNDAALAIARAVGGSPH 131
Query: 133 K--------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
F+ MN + +LGL+ T +N HG+ H+ +A D+A+++ + + P
Sbjct: 132 ADDQAARGRFIDWMNERAVSLGLTDTRVVNPHGLDARDHFGSAHDLALVTRAVL-ESPVL 190
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F +G +Y +TN + G G KTG+T A+G +V A + + +I V+L
Sbjct: 191 APIFGAHDYSGEGHRYESTNKLWERYPGIIGGKTGWTRAAGHCLVEVAERDGRRVIVVLL 250
Query: 245 GALDRNTRNKVSASLLSMGFY 265
G+ + LL GF
Sbjct: 251 GSTSER-WYDDATVLLDHGFA 270
>gi|224533632|ref|ZP_03674221.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
CA-11.2a]
gi|225549566|ref|ZP_03770532.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
118a]
gi|224513305|gb|EEF83667.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
CA-11.2a]
gi|225369843|gb|EEG99290.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi
118a]
Length = 405
Score = 140 bits (351), Expect = 3e-31, Method: Composition-based stats.
Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 25/321 (7%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L+D +T ++ P+ + PASLTK++T Y +++ L + + IS +AS
Sbjct: 40 AKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99
Query: 88 EYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
Y +KG + + LK L V S ND ++AIAE + FV MN
Sbjct: 100 YYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVL 159
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---------- 193
NLGL HF+ G + TA DMA F ++ +K
Sbjct: 160 NLGLFNMHFVEPSG-YSSENKITALDMAFFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGT 218
Query: 194 ----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG---- 245
+ K N N + + +DG+KTG+ SG N+VA+A +G++ LIAV+LG
Sbjct: 219 ALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGVEKG 278
Query: 246 --ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
R+ ++ +L GF + I + + Y + E +
Sbjct: 279 INGFGEKMRSSIAKNLFEYGFNKYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYILTKD 338
Query: 304 INYNTQMKEAKDKESHFIDFE 324
+ DK + +
Sbjct: 339 EFDKINISYTVDKLVAPLSGD 359
>gi|300986937|ref|ZP_07177913.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
gi|300407823|gb|EFJ91361.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS 45-1]
gi|307626443|gb|ADN70747.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli UM146]
gi|315295235|gb|EFU54570.1| serine-type D-Ala-D-Ala carboxypeptidase [Escherichia coli MS
153-1]
Length = 321
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 74/284 (26%), Positives = 126/284 (44%), Gaps = 11/284 (3%)
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIV 113
MT YVV + + +T+ ++A K+G +++ + + LIV
Sbjct: 1 MTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIV 60
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND VA+A+ + +++FV+ MNN ++ L L THF HG+ G +++A D+A+L
Sbjct: 61 DSGNDACVALADYIAGGQRQFVEMMNNYAEKLHLKDTHFETVHGLDAPGQHSSAYDLAVL 120
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASA 232
S I P++ H + K L G N N + DG+KTG T +GFN++ASA
Sbjct: 121 SRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNVDGLKTGHTSGAGFNLIASA 180
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD----FYQQNLSNE 288
+ G + LIAV++GA R + + LL G N T + ++ K + + N
Sbjct: 181 VDGQRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENI 240
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+E + + + K D + +
Sbjct: 241 ALGTEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEI 284
>gi|225548661|ref|ZP_03769708.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 94a]
gi|225370691|gb|EEH00127.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 94a]
Length = 405
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 25/321 (7%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L+D +T ++ P+ + PASLTK++T Y +++ L + + IS +AS
Sbjct: 40 AKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99
Query: 88 EYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
Y +KG + + LK L V S ND ++AIAE + FV MN
Sbjct: 100 YYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVL 159
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---------- 193
NLGL HF+ G + TA DMA F ++ +K
Sbjct: 160 NLGLFNMHFVEPSG-YSSENKITALDMAFFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGT 218
Query: 194 ----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG---- 245
+ K N N + + +DG+KTG+ SG N+VA+A +G++ LIAV+LG
Sbjct: 219 ALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGVEKG 278
Query: 246 --ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
R+ ++ +L GF + I + + Y + E +
Sbjct: 279 INGFGEKMRSSIAKNLFEYGFNKYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYILTKD 338
Query: 304 INYNTQMKEAKDKESHFIDFE 324
+ DK + +
Sbjct: 339 EFDKINISYTVDKLVAPLSGD 359
>gi|224534683|ref|ZP_03675255.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia spielmanii A14S]
gi|224513931|gb|EEF84253.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia spielmanii A14S]
Length = 401
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 81/336 (24%), Positives = 128/336 (38%), Gaps = 25/336 (7%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L + + L+D +T V+ P+ + PASLTK++T Y ++
Sbjct: 25 LFAVNLAEINKLSLHAKSIVLMDFDTKRVLYSKKPNLVFPPASLTKIVTIYTALIEAGKR 84
Query: 73 KAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
L + + IS +AS Y +KG + + LK L + S ND ++AIAE +
Sbjct: 85 NVKLKSIVPISDSASYYNAPLNSSLMFLEKGQIVNFEEILKGLSISSGNDASIAIAEFVV 144
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
FV MN NLGL HF+ G + TA DMA F ++
Sbjct: 145 GDLNSFVNLMNINVMNLGLFNMHFVEPSGYSN-ENKITALDMAFFVKSYIEKFKFMLNIH 203
Query: 189 QIKGLEIKGK--------------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+K K N N + + +DG+KTG+ SG N+VA+A +
Sbjct: 204 SLKYFVYPKSKNLGTTLASKFLNLKQRNANLLIDDYPYSDGLKTGYIKESGLNLVATAQK 263
Query: 235 GDQSLIAVILGALDRNTRNKV------SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
GD+ LIAV+LG R+ + +L GF + I + + Y +
Sbjct: 264 GDRRLIAVVLGVEKGINRSGERMRALIAKNLFEYGFNEYSKFPLIVKLKEKVYNGIVDTV 323
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
E + + DK + +
Sbjct: 324 ALFSKEPFYYVFTKDEFNKLNISYTVDKLVAPLTGD 359
>gi|71902909|ref|YP_279712.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS6180]
gi|71802004|gb|AAX71357.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS6180]
Length = 410
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 69/364 (18%), Positives = 141/364 (38%), Gaps = 29/364 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + +D +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHAIAVDLESGKVLYEKDTKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+AI++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAIIARHLLLEFPEVLKLSSKSSTIFDGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKI-- 273
++ +G + VA++++ +I V+L A D K + LL N + I
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQLIEN 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ--MKEAKDKESHFIDFEKITLLKN 331
N +K + + + + + I+ T+ + K + K +L
Sbjct: 302 NKPVKTLSVLDSPEKTVKLVAQNSLFFIKPIHTKTKNTVHITKKSSTMIAPLSKGQVLGR 361
Query: 332 KITK 335
+
Sbjct: 362 ATLQ 365
>gi|254228127|ref|ZP_04921557.1| beta-lactamase [Vibrio sp. Ex25]
gi|151939623|gb|EDN58451.1| beta-lactamase [Vibrio sp. Ex25]
Length = 249
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 74/229 (32%), Positives = 108/229 (47%), Gaps = 4/229 (1%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
++ + A Y L+D +TG V+ E NPASLTKLMTAYV +
Sbjct: 21 SLAYAAPTVVPNAPELSSRGYVLMDFHTGKVLVERDAHKRLNPASLTKLMTAYVAGQEIN 80
Query: 71 EKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L + IS+NA S + ++++L + + L+V+S ND +VAIAE +
Sbjct: 81 AGNITLDDEVVISRNAWAKNFPDSSKMFIEVNTSVSLSDLYRGLVVQSGNDASVAIAEHV 140
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E FV MN+ + L L+ T F N HG+ G Y+T D+A L I D P
Sbjct: 141 AGSESGFVSLMNSWAAKLELNNTAFTNPHGLDSDGLYSTPYDIAKLGQAIIRDLPDIYPL 200
Query: 188 FQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ G N N + DGMKTG+T +G+++ SA QG
Sbjct: 201 YSETSFTYNGITQYNRNGLLRDRSMNVDGMKTGYTSGAGYSLATSATQG 249
>gi|229164337|ref|ZP_04292267.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
gi|228619080|gb|EEK75976.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
Length = 424
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 125/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLSLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
N+ G+ + +ARDM ILS I T +P+ + + +
Sbjct: 163 NSTGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKIDKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKAPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
+++ DK +K + + + +
Sbjct: 343 KIETEADKSIAEDGHLVAPIKKDAKVGSIVLE 374
>gi|15594950|ref|NP_212739.1| serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Borrelia
burgdorferi B31]
gi|2688537|gb|AAC66969.1| serine-type D-Ala-D-Ala carboxypeptidase (dacA) [Borrelia
burgdorferi B31]
Length = 405
Score = 140 bits (351), Expect = 4e-31, Method: Composition-based stats.
Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 25/321 (7%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L+D +T ++ P+ + PASLTK++T Y +++ L + + IS +AS
Sbjct: 40 AKSIVLIDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99
Query: 88 EYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
Y +KG + + LK L V S ND ++AIAE + FV MN
Sbjct: 100 YYNAPPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVL 159
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---------- 193
NLGL HF+ G + TA DMA F ++ +K
Sbjct: 160 NLGLFNMHFVEPSG-YSSENKITALDMAFFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGT 218
Query: 194 ----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG---- 245
+ K N N + + +DG+KTG+ SG N+VA+A +G++ LIAV+LG
Sbjct: 219 ALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGVEKG 278
Query: 246 --ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
R+ ++ +L GF + I + + Y + E +
Sbjct: 279 INGFGEKMRSSIAKNLFEYGFNKYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYILTKD 338
Query: 304 INYNTQMKEAKDKESHFIDFE 324
+ DK + +
Sbjct: 339 EFDKINISYTVDKLVAPLSGD 359
>gi|229034027|ref|ZP_04188975.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
gi|228728290|gb|EEL79318.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
Length = 423
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 74/332 (22%), Positives = 126/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW ++ GADG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFSYEGADGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + + +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKHNTISVVKGKEDQVTVTPEKEITVIAKKGSKDPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPVKKDANVGSITLE 374
>gi|221218183|ref|ZP_03589649.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 72a]
gi|221192131|gb|EEE18352.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia burgdorferi 72a]
Length = 405
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 79/321 (24%), Positives = 128/321 (39%), Gaps = 25/321 (7%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L+D +T ++ P+ + PASLTK++T Y +++ L + + IS +AS
Sbjct: 40 AKSIVLMDFDTKRILYSKKPNLVFPPASLTKIVTIYTALIEAEKRNIKLKSIVPISDSAS 99
Query: 88 EYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
Y +KG + + LK L V S ND ++AIAE + FV MN
Sbjct: 100 YYNALPNSSLMFLEKGQIVNFEEILKGLSVSSGNDSSIAIAEFVVGNLNSFVNLMNINVL 159
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---------- 193
NLGL HF+ G + TA DMA F ++ +K
Sbjct: 160 NLGLFNMHFVEPSG-YSSENKITALDMAFFVKSYIEKFKFMLNIHSLKYFIYPKSRNLGT 218
Query: 194 ----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG---- 245
+ K N N + + +DG+KTG+ SG N+VA+A +G++ LIAV+LG
Sbjct: 219 ALSSKFLNLKQRNANLLIYDYPYSDGIKTGYIKESGLNLVATAKKGERRLIAVVLGVEKG 278
Query: 246 --ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
R+ ++ +L GF + I + + Y + E +
Sbjct: 279 INGFGEKMRSSIAKNLFEYGFNKYSKFPLIVKLKEKVYNGTVDTVALFSKEPFYYILTKD 338
Query: 304 INYNTQMKEAKDKESHFIDFE 324
+ DK + +
Sbjct: 339 EFDKINISYTVDKLVAPLSGD 359
>gi|227499916|ref|ZP_03930009.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus tetradius
ATCC 35098]
gi|227218025|gb|EEI83298.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus tetradius
ATCC 35098]
Length = 402
Score = 139 bits (350), Expect = 5e-31, Method: Composition-based stats.
Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 24/354 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNPA 54
++ ++I + ++ + P A + Y + + TG V E D A
Sbjct: 4 KKTMLISLLTLVFLLMPGEIFAAQTRVVGLDSNVSSYLIGNEETGDVYYEKNADEARPMA 63
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITIS---KNASEYPPSNSTFKKGSTMTLDNALKLL 111
SLTKLMT +V ++E K L T + + + + S+ K+ + +++ L+ L
Sbjct: 64 SLTKLMTFLLVRDAIEEGKINLNTSVKADKKAEELTSWEYSSLGLKEKESYSVEELLQGL 123
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---VQHGHYTTAR 168
I S ND A +A+++ +E+KF MN +K LGLS+ + NA G+ + ++AR
Sbjct: 124 IAVSGNDCAYLLAKTVAGSEEKFATLMNEKAKELGLSSQKYYNASGIETKDNKENQSSAR 183
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGF 226
D+ LS I +P + Y + + I GK +T G DG+KTG T +G+
Sbjct: 184 DLFKLSSFIVRKYPDILRYSTMDEVNIPGKGIRKTSTIPLRKDIKGVDGLKTGTTDKAGY 243
Query: 227 NIVASAIQ------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK--INYIIK 278
+V + D I V++GA ++TR V + L+ + +K +N +
Sbjct: 244 CLVTTVDMKELDGSDDFRCIGVVMGADQKDTRESVMSDLIYYISRFYSCKKVLDVNKSLD 303
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + + + K +K +K +L
Sbjct: 304 SIEVGSAKQGYIELYPKENLSIISNDDKKVATKITLNK-DIKAPIKKGDILGKV 356
>gi|170761736|ref|YP_001787179.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A3 str.
Loch Maree]
gi|169408725|gb|ACA57136.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
botulinum A3 str. Loch Maree]
Length = 378
Score = 139 bits (350), Expect = 6e-31, Method: Composition-based stats.
Identities = 74/317 (23%), Positives = 127/317 (40%), Gaps = 14/317 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ +D +TG V+ E + AS TK+MT V + L
Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I IS+NA + S ++KG +TL L L+++S ND A+AIAE + + + F +
Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSVEGFSKL 146
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARD----MAILSWRIKTDFPQYMHYFQIKGL 193
MN + +GL +HF+ HG+ + HY+TA D A + + +
Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNEIVSSKDVKKEEY 206
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ Y N N + ADG+KTG+T +G +V S+ +I V+L R
Sbjct: 207 NF-TRDYHNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCT---PRW 262
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE-EVCTTQKEIINYNTQMKE 312
+ + + N +K V I++ ++ K +Y+ ++ +
Sbjct: 263 NETTKIHNYVKNNYDFKKICTKGDILDQAVFEEGSVNIIADKDIIIPFKNGADYSIKINK 322
Query: 313 AKDKESHFIDFEKITLL 329
K+ E L
Sbjct: 323 PKELNWKVKKGEDFGAL 339
>gi|225374872|ref|ZP_03752093.1| hypothetical protein ROSEINA2194_00495 [Roseburia inulinivorans DSM
16841]
gi|225213255|gb|EEG95609.1| hypothetical protein ROSEINA2194_00495 [Roseburia inulinivorans DSM
16841]
Length = 410
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 57/291 (19%), Positives = 109/291 (37%), Gaps = 28/291 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPF-------LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
+++ + I ++ +P L+D +G ++
Sbjct: 11 LKRAISFIICLIILFTYPTKLMAAQEPPEEAELFAKAAVLMDGGSGRILYSKNGSEALAN 70
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK++T + ++ +S A++ P + G + + + +++
Sbjct: 71 ASTTKILTCIIALENCDLEQIT-----EVSVQAAKAPKVHLGAPAGQKFRMKDLIYAMML 125
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARD 169
+S ND AV IAE + T + F + MN+ +K +G T F+ +G+ H+TTA D
Sbjct: 126 ESFNDCAVVIAEQVAGTTEHFSKLMNDYAKKIGCKDTFFITPNGLDAQKDIQFHHTTAED 185
Query: 170 MAILSWRIKTDFPQYMHYFQIK---GLEIKG------KKYPNTNWAVGTFLGADGMKTGF 220
+A + + P+ + +I N N + GA KTGF
Sbjct: 186 LAQIMRYCIKESPKADQFLKITGEAEYTFTDVSGKYAYHCYNHNAFLKMMDGAVSGKTGF 245
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTR---NKVSASLLSMGFYNKT 268
T +G+ V + Q ++ I +L N R + L+ G
Sbjct: 246 TGNAGYCYVGALEQNGKTYIVALLACGWPNNRTYKWSDTRKLMEYGLAAYE 296
>gi|221632531|ref|YP_002521752.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermomicrobium roseum
DSM 5159]
gi|221157198|gb|ACM06325.1| serine-type D-Ala-D-Ala carboxypeptidase [Thermomicrobium roseum
DSM 5159]
Length = 549
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 76/273 (27%), Positives = 124/273 (45%), Gaps = 16/273 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R L ++ +A+ I ++ ++D TG ++AE P ASLTK+MT
Sbjct: 7 RCVLGLLIVALAIPIPVRADSLPEVVAQHWIIMDAETGQIVAERAARQPVAIASLTKVMT 66
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A V + L P+TI S++ + G +TL L L+++S ND A+
Sbjct: 67 AVVALE-----RGALDQPVTIVPE-DLIGESSAGLRAGQVVTLRTLLYGLLLRSGNDAAM 120
Query: 122 AIAESLCKTEKK--------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
AIA ++ + FV MN + LGL AT F N HG+ + GH ++A D+A L
Sbjct: 121 AIARAVGGSPDAEDPAARQRFVTWMNAKAVELGLQATSFRNPHGLDEPGHVSSAYDLARL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ D P ++ F +G + +TN + G G KTG+T +G ++ A
Sbjct: 181 TRVALAD-PVFVEIFGAASYHGEGFSWRHTNRLPERYPGIIGGKTGWTDEAGLCLIEVAE 239
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ ++ I V+ G+ +A LL G+
Sbjct: 240 RAGKTAIVVLTGS-TLAAWYDDAAKLLDYGWTK 271
>gi|160943813|ref|ZP_02091044.1| hypothetical protein FAEPRAM212_01311 [Faecalibacterium prausnitzii
M21/2]
gi|158444987|gb|EDP21990.1| hypothetical protein FAEPRAM212_01311 [Faecalibacterium prausnitzii
M21/2]
Length = 443
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 67/350 (19%), Positives = 116/350 (33%), Gaps = 25/350 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++F + +L + A Y ++D +TG V+A+ D +PAS
Sbjct: 1 MKKFTAALCTVLLLIGAVLVPGAAAAGPALANTRAYCIMDADTGLVLAQQNMDEELHPAS 60
Query: 56 LTKLMTAYVVFS--FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
+TK+MT + LT + + S+ ++G + L +AL +
Sbjct: 61 ITKVMTLGLACEKAQGDWDDVKLTVTHEDVYSLAGTDSSHIALREGEEVPLVDALYATQM 120
Query: 114 KSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
SAND A +AE V MN + LGL+ THF N HG+ HYT+ DMA
Sbjct: 121 ASANDGANLLAEYFGGGTIADGVAAMNAQVEELGLAHTHFSNPHGISDEDHYTSCYDMAQ 180
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV------------GTFLGADGMKTGF 220
+ + + + ++ G K G+
Sbjct: 181 ILRWALQQPGFEELFTRNEMYTMQPTNIQPVTRYFSQQDKIRIGSSRYHIDSVLGSKLGY 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----KINY 275
T + ++ V A Q LI + + + +LL F +
Sbjct: 241 TNTARYSYVCLAEQDGVRLICATMQSQLSTDKYNDMRTLLDYAFSTYKSYTQLPGGTVTA 300
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ V V E ++ + + E + + E
Sbjct: 301 QLAVAGGGQSLGTVTVADPGVKLLLAEGLSAQDVTVDLELPEQYLLGAEP 350
>gi|325108452|ref|YP_004269520.1| serine-type D-Ala-D-Ala carboxypeptidase [Planctomyces brasiliensis
DSM 5305]
gi|324968720|gb|ADY59498.1| Serine-type D-Ala-D-Ala carboxypeptidase [Planctomyces brasiliensis
DSM 5305]
Length = 302
Score = 139 bits (349), Expect = 6e-31, Method: Composition-based stats.
Identities = 74/287 (25%), Positives = 132/287 (45%), Gaps = 27/287 (9%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+ F +++ +++ + +T +D TG +I +
Sbjct: 1 MKWFSFCLLSFLIIAPALAEDVVLLERYDGPPAVTCEAWTAIDAETGEMIVSHKAGEVLR 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PAS TK+MT+Y+VF+ E ++ +T S+ A + S+ST ++G +++ L L+
Sbjct: 61 PASTTKIMTSYLVFNLAAESPEVMEELVTFSRRADKTGGSSSTVREGEQVSVRELLYGLL 120
Query: 113 VKSANDIAVAIAESLCKT---------EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S ND +VA+AE ++FV MN + LG++ TH+ N HG+ H
Sbjct: 121 LPSGNDASVALAEHFGDRLSPEGEGTAYERFVAAMNRQAAELGMNDTHYENTHGLDNVKH 180
Query: 164 YTTARDMAILSWRIKT--------DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADG 215
TTA DMA L+ +Y + E + ++ NTN + G G
Sbjct: 181 VTTAADMARLAQAAMQIPDFRKVVRTAEYRTAVTQEDGEQRVLEWRNTNKLLPY--GYLG 238
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+KTG+T +G +V+ + + + LI V+L + R++R S +L
Sbjct: 239 VKTGWTTMAGACLVSCSQRDGRELILVVLKSSCRDSRFTDSRNLWRW 285
>gi|331700972|ref|YP_004397931.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
NRRL B-30929]
gi|329128315|gb|AEB72868.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
NRRL B-30929]
Length = 421
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 67/365 (18%), Positives = 138/365 (37%), Gaps = 41/365 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F ++ ++M + ++ +D ++G ++ + + P AS++KLMT Y
Sbjct: 14 FFCVLTLSMTVDAKSTVTPEPAIYAKSAIAVDADSGQILYQKNANQPRAIASISKLMTVY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV----KSANDI 119
+V ++ K + IS ++ ++ T +++ L+ +SAN
Sbjct: 74 IVHQQIRANKLAWDDKVKISSELAKLSTASGLTNVPLTAGKAYSVRQLVNATLVESANAA 133
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--------------GHYT 165
A+A+ + + T KF MN T++ +G+S HF NA G+ +
Sbjct: 134 ALALGQKVAGTATKFAALMNKTARKIGISDGHFYNASGLTNKLTGKLALSHVSANAENLL 193
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-----GADGMKTGF 220
+A+D+A+L+ ++ FP+ + + G N + DG+KTG
Sbjct: 194 SAKDVALLAQKLLQKFPKVTNITEQTTSTFYGTTMTGHNQLIDDHNLGQGVRVDGLKTGT 253
Query: 221 TCASGFNIVASAIQGD-QSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINY 275
+ +G V SA +I V+LGA +++ R +A L+ + I
Sbjct: 254 SDKAGACFVGSATTNGKHRIITVVLGARNKSANDPARFIQTAKLMKWV---YATHQPIKL 310
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE----------SHFIDFEK 325
++P+ + + ++ K K+ +K
Sbjct: 311 AAGATIAGVDKAKIPDGKQTTILPVTKATHWAWADKGTSAKQISGQYVNQPAKLTSPTKK 370
Query: 326 ITLLK 330
T +
Sbjct: 371 GTQVG 375
>gi|313891603|ref|ZP_07825210.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister microaerophilus
UPII 345-E]
gi|313119881|gb|EFR43066.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister microaerophilus
UPII 345-E]
Length = 323
Score = 139 bits (349), Expect = 7e-31, Method: Composition-based stats.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 13/278 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
V+I + P + + + D NTG + + PAS TK++T
Sbjct: 34 IAVLIKITPPPPQKPQMKVLPQVDAVSVAIADGNTGKFLGGKDSELRVYPASTTKILTCI 93
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ L I+ NA++ + K ++L L +++ S ND AV++
Sbjct: 94 IALEE---GHDKLNDNALITPNATKQDGTCLGLKPDLPISLQELLYGMMLVSGNDAAVSV 150
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP- 182
AE++ + F++ MN +KN+G ++F+NA+G+ HYTTA DMA ++ +
Sbjct: 151 AETVSGNYETFIKLMNAKAKNIGAVNSNFVNANGLTDKNHYTTASDMAKIAVYAMKNQNF 210
Query: 183 -----QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ H + I+ + N G + GA+G+KTG T A+G +VASA +
Sbjct: 211 RKIVKEPFHMMTYRDGTIRRIENRNEFLESG-YEGANGIKTGMTEAAGDCLVASAERDGH 269
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
++ I R + LL GF + +
Sbjct: 270 LVVVSIYN---DENRWEDVKKLLDYGFDAIKNEEMYEK 304
>gi|262402708|ref|ZP_06079269.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
gi|262351490|gb|EEZ00623.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
Length = 317
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 121/280 (43%), Gaps = 9/280 (3%)
Query: 64 VVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ +K L + ISKNA S + G+T+ + + + +I++S ND
Sbjct: 1 MIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSDLNRGIIIQSGNDAC 60
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T D+A+L + D
Sbjct: 61 VAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDNPDLYSTPYDLALLGQALIRD 120
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
P+ + + G N N + DG+KTG T +G+N+V+SA +G+ L
Sbjct: 121 VPEEYAIYSEQKFTYNGITQYNRNGLLWDKSMNVDGIKTGHTSGAGYNLVSSATEGNMRL 180
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE 295
+AV++G + N R S LLS GF + + + + ++
Sbjct: 181 VAVVMGTDNENARKAESKKLLSYGFRFFETVAPHKAGETFVNETIWMGDKDTIALGVDKD 240
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
T + +KE +K ++ +
Sbjct: 241 TYVTLPRGQAKDLTASFVLEKE-LKAPLKKGDVVGTLYYQ 279
>gi|325957359|ref|YP_004292771.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus acidophilus
30SC]
gi|325333924|gb|ADZ07832.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus acidophilus
30SC]
Length = 432
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 71/377 (18%), Positives = 132/377 (35%), Gaps = 53/377 (14%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPWNP 53
F+ I++ +F A+ +D+++G ++ D
Sbjct: 14 FVAAISLISCGAVFTTPVHADATSSYQADQLNLNVKSAIAIDSDSGQILYAKNADKTLPI 73
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS+TKL+T Y+ +K KK + I K A+ SN K G + T+ +
Sbjct: 74 ASMTKLVTVYLTLQAIKNKKLSWDQKVKPTAPIVKVANNTEYSNVPLKMGHSYTIRQLYQ 133
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+++SAN A+ + +++ ++K F+ M K G+ A G+
Sbjct: 134 ATLIESANGAAMLLGQTIAGSQKAFINQMRAQVKKWGIEDAKIYTACGLPNGNLGKDAYP 193
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWA----- 206
+ +A+DMAI+ + DFP+ + +I L K K N NW
Sbjct: 194 GVNKNDENTMSAKDMAIIGQNLIKDFPEVLDTTKIAHLNFKDGNKVTKMANFNWMLKGLS 253
Query: 207 --VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLL 260
+ DG+KTG T A+G + + LI V++GA +R + L+
Sbjct: 254 QYDEAYP-VDGLKTGTTDAAGACFIGTVEHSGARLITVVMGARHQDGTDPSRFIQTKKLM 312
Query: 261 SMGFYNKTDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
+ F + + + + + +
Sbjct: 313 NFIFNKYRPITMTAGSQMNGAKSIKVTDGDNATTNLGLKNRITIWDPADDK---TLVASL 369
Query: 315 DKESHFIDFEKITLLKN 331
DK++ K + N
Sbjct: 370 DKKTVEAPITKDQTIGN 386
>gi|160882047|ref|YP_001561015.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
phytofermentans ISDg]
gi|160430713|gb|ABX44276.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
phytofermentans ISDg]
Length = 516
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 64/306 (20%), Positives = 122/306 (39%), Gaps = 20/306 (6%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+++ +TG ++ E PAS+TK++T + L
Sbjct: 49 TWPTGPEVYADAAIVMEASTGLILYEKDIYDKHYPASITKILTTLLAIENC-----NLNE 103
Query: 79 PITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-F 134
+T+S A + S +G +++L +AL ++++SAN+++ + E + K F
Sbjct: 104 TMTMSHAAEWDVDFNSSRIGLVEGESLSLKDALYAVMLESANEVSFGVGEHVAKGSMTDF 163
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
MN +K LG ++F+N +G+ HYT A DMA++S P++ +
Sbjct: 164 TAMMNARAKELGCVNSNFVNPNGLHDDNHYTCAYDMALISRAAIM-LPEFRTITGTRTYT 222
Query: 195 IKGK---------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
I + + GA G KTG T + +V A + +LIAV+L
Sbjct: 223 IPATNKNVARPLANHHRFIRKTSNYDGAIGGKTGGTTEAKTTLVTYAERNGLTLIAVVLH 282
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKIN-YIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
+ +A +L F N + + + + +L + P + + +
Sbjct: 283 VDTGLHAYEDTAKILDFAFDNYALYRIEDTEGVNNSAFTSLFKDFPAFVKPDQSPLRLSS 342
Query: 305 NYNTQM 310
N N +
Sbjct: 343 NSNVVL 348
>gi|328958772|ref|YP_004376158.1| D-alanyl-D-alanine carboxypeptidase DacA [Carnobacterium sp. 17-4]
gi|328675096|gb|AEB31142.1| D-alanyl-D-alanine carboxypeptidase DacA [Carnobacterium sp. 17-4]
Length = 439
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 62/389 (15%), Positives = 128/389 (32%), Gaps = 58/389 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDT-------------NTGHVIAENYP 47
M++ I + + + S + ++ TG V+
Sbjct: 1 MKKSAKISTLFVTMLLLGTFSPLMASTTVSAATIEQPAIEAAAAFAIEPTTGKVLLNQNG 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMT 103
D AS+TK++T Y++ +K + IS+ A + T +
Sbjct: 61 DEKLGIASMTKMITEYILLETIKNGDLAWDDQVNISEYAHNISQNYELSNVPLRIDDTYS 120
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---- 159
++ + + + SAN +A+AE + EK FV M+ ++ G++ N G+
Sbjct: 121 VEELYQAMAIYSANGATIALAEHIAGDEKSFVDMMHEKVESWGITNYELYNTTGLSNSDL 180
Query: 160 ----------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTN 204
+ TAR+M+I++ R+ DFP+ + I + + N N
Sbjct: 181 QGNIYPGSTEDSENSMTAREMSIVAQRLLVDFPEVLKTSSISEKKFREGTSDEISMQNFN 240
Query: 205 WA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNKVS 256
W + DG+KTG T +G ++ +A + +I +++ A + R +
Sbjct: 241 WMLPGLIYERENVDGLKTGTTDFAGASMTGTAEEEGMRVITIVMNATNGQENLSKRFAET 300
Query: 257 ASLLSMGFYNKTDRKKINYIIK-------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
++ F N + + +V +
Sbjct: 301 DKIMDWAFENWDMVPVFKEGQTLEDVEPLAVDKGKEDTLNVAVQSDVSLLVPTNADSEKT 360
Query: 310 MKEAKDKES-------HFIDFEKITLLKN 331
+ K+ +K T +
Sbjct: 361 TATVQVKKDLLNEAGNLTAPIKKGTEVGT 389
>gi|295104040|emb|CBL01584.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
SL3/3]
Length = 443
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 67/350 (19%), Positives = 116/350 (33%), Gaps = 25/350 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-----KLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++F + +L + A Y ++D +TG V+A+ D +PAS
Sbjct: 1 MKKFTAALCTVLLLIGAVLVPGAAAAGPALANTRAYCIMDADTGLVLAQQNMDEELHPAS 60
Query: 56 LTKLMTAYVVFS--FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
+TK+MT + LT + + S+ ++G + L +AL +
Sbjct: 61 ITKVMTLGLACEKAQGDWDDVKLTVTHEDVYSLAGTDSSHIALREGEEVPLVDALYATQM 120
Query: 114 KSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
SAND A +AE V MN + LGL+ THF N HG+ HYT+ DMA
Sbjct: 121 ASANDGANLLAEYFGGGTIADGVAAMNAQVEELGLAHTHFSNPHGISDDDHYTSCYDMAQ 180
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV------------GTFLGADGMKTGF 220
+ + + + ++ G K G+
Sbjct: 181 ILRWALQQPGFEDLFTRNEMYTMQPTNIQPVTRYFSQQDKIRIGSSRYHIDSVLGSKLGY 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK-----KINY 275
T + ++ V A Q LI + + + +LL F +
Sbjct: 241 TNTARYSYVCLAEQDGVRLICATMQSQLSTDKYNDMRTLLDYAFSTYKSYTQLPGGTVTA 300
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ V V E ++ + + E + + E
Sbjct: 301 QLAVAGGGQSLGTVTVADPGVKLLLAEGLSAQDVTVDLELPEQYLLGAEP 350
>gi|229176064|ref|ZP_04303558.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
gi|228607408|gb|EEK64736.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
Length = 423
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 77/332 (23%), Positives = 127/332 (38%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYYSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW ++ G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFSYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S L+ GF N +K K N I +++ VP V + Y
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTISVVKGKEDQVTVVPEKEITVIAKKGSKDPY 342
Query: 307 NTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|294794892|ref|ZP_06760027.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 3_1_44]
gi|294454254|gb|EFG22628.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 3_1_44]
Length = 300
Score = 138 bits (348), Expect = 8e-31, Method: Composition-based stats.
Identities = 71/258 (27%), Positives = 117/258 (45%), Gaps = 11/258 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
S + L+D +T ++ PD +PAS TK++T K
Sbjct: 44 ASVAQAAYITPPSTVGEAVVLIDADTKEILFAKNPDKWMHPASTTKMVTLLTALEL---K 100
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L TIS A+ SN + G +TL+ L+ ++V S ND AV +AE++ +
Sbjct: 101 GTQLDELATISSYATSMEESNLGVRVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVD 160
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYF 188
KF + M + G + F+N HG+ Q GH++TARD+A++ Y+
Sbjct: 161 KFAKDMTRIAAKAGAKNSVFLNPHGLTQKGHHSTARDLAMIAAYGMKYQMFRDKVANDYY 220
Query: 189 QIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + TN + + GA+G+KTGFT A+G ++ASA + ++I V+L
Sbjct: 221 KVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRNGHTMIVVMLN-- 278
Query: 248 DRNTRNKVSASLLSMGFY 265
+ R + L GF
Sbjct: 279 -DDNRWDEAVQFLDYGFK 295
>gi|295425352|ref|ZP_06818055.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus
amylolyticus DSM 11664]
gi|295065128|gb|EFG56033.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus
amylolyticus DSM 11664]
Length = 432
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 74/352 (21%), Positives = 136/352 (38%), Gaps = 35/352 (9%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
S I + + +D+ TG ++ D AS+TKL+T Y+ +K K
Sbjct: 33 SSTISSYRQDELNLNVKSALAIDSKTGQILYAKNADKTLPIASMTKLVTVYLTLQAIKNK 92
Query: 73 KAMLTTPIT----ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+ TT + I K A+ SN KKG + T+ + +++SAN A+ +A+++
Sbjct: 93 QISWTTKVKPTATIVKVANNSEYSNVPLKKGHSYTIKQLYQATLIESANGAAMCLAQAVS 152
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILS 174
++ FV+ M K G++ G+ + +A+DMAI+
Sbjct: 153 GSQVAFVKKMRAQVKKWGINDAKIYTVCGLPNGNLGSDAYPGVSKNAENTMSAKDMAIIG 212
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGK----KYPNTNWA------VGTFLGADGMKTGFTCAS 224
R+ DFP + I L K + + N NW L DG+KTG T A+
Sbjct: 213 QRLINDFPAVLKTTSIAKLAFKDQGKTTQMENFNWMLKGLSQYDANLKVDGLKTGTTDAA 272
Query: 225 GFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
G + + + +I V++GA +R + L++ F T +
Sbjct: 273 GACFIGTIKKNGSRIITVVMGARHQDGTDPSRFVQTKKLMNWIFSKYTPVIMNAGTTFNQ 332
Query: 281 YQQNLSNEVPNISEEVCTTQKEIIN---YNTQMKEAKDKESHFIDFEKITLL 329
+ + ++ V K I +++ + K++ K +
Sbjct: 333 AKAVSVTDGDQLTTNVGLKSKTTIWDPVDGSKISASLTKKTVNAPVTKGQTV 384
>gi|160946179|ref|ZP_02093390.1| hypothetical protein PEPMIC_00141 [Parvimonas micra ATCC 33270]
gi|158447702|gb|EDP24697.1| hypothetical protein PEPMIC_00141 [Parvimonas micra ATCC 33270]
Length = 391
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 85/340 (25%), Positives = 145/340 (42%), Gaps = 8/340 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+I ++ + + K + D +G + D P + AS++KLMT Y
Sbjct: 10 LALIFSICFVGTAKSYAIFGIEKKTTASLIGDAKSGALFVAENIDEPLSIASISKLMTYY 69
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V + E K + + IS NAS S+ K G +++ + L L+V S ND AVA+
Sbjct: 70 LVKEKIAEGKLKMEDKVKISINASREEGSSLNLKAGEQISIKDLLDGLMVVSGNDSAVAL 129
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY--TTARDMAILSWRIKTDF 181
AE + ++E KFV MN +K LGL F NA G+ ++G + RD+ LS I +
Sbjct: 130 AEVVAESESKFVTMMNEKAKELGLQNATFTNASGLTKNGQDNKMSTRDIFTLSKAIIEKY 189
Query: 182 PQYMHYFQIKGLEI--KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-- 237
P+ + Y + LE + K +T VG G DG+KTG T +G+ +V++
Sbjct: 190 PEVLEYAKTTVLEQPSRNFKKESTIPLVGQVEGVDGLKTGHTDEAGYCLVSTMKIKKGET 249
Query: 238 --SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
+I+V++GA + R + +L+ N RK ++ + S I
Sbjct: 250 EFRVISVLMGAKTKADRAQYMKDMLNYAKQNIETRKIVDSEKFVKKVETKSASQGFIELV 309
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ + + + +K + K
Sbjct: 310 PKENLERASMKGINYETEVTVDDVKLPLKKGDKVGEIKIK 349
>gi|296278518|pdb|3MFD|A Chain A, The Structure Of The Beta-Lactamase Superfamily Domain Of
D- Alanine Carboxypeptidase From Bacillus Subtilis
gi|296278519|pdb|3MFD|B Chain B, The Structure Of The Beta-Lactamase Superfamily Domain Of
D- Alanine Carboxypeptidase From Bacillus Subtilis
Length = 334
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 63/312 (20%), Positives = 111/312 (35%), Gaps = 13/312 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ A ++D +G V+ AS+TK+ TA + K
Sbjct: 1 SNAAIDVSAKSAIIIDGASGRVLYAKDEHQKRRIASITKIXTAVLAIESGKX-----DQT 55
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+T+S NA S +G + L + + L ++S ND AVAIAE + + FV N
Sbjct: 56 VTVSANAVRTEGSAIYLTEGQKVKLKDLVYGLXLRSGNDAAVAIAEHVGGSLDGFVYXXN 115
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ LG T F N HG+ H ++ + + + Y K + + +
Sbjct: 116 QKAEQLGXKNTRFQNPHGLDDHENHYSTAYDXAILTKYAXKLKDYQKISGTKIYKAETXE 175
Query: 200 YPNTNWAV---GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
N + + G KTG+T + +V++A + LIAV + +
Sbjct: 176 SVWKNKNKLLTXLYPYSTGGKTGYTKLAKRTLVSTASKDGIDLIAVTINDPND---WDDH 232
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC--TTQKEIINYNTQMKEAK 314
+ F + + I ++ T++E N K
Sbjct: 233 XKXFNYVFEHYQTYLIAKKGDIPKLKGTFYESKAFIKRDITYLLTEEEKENVKINTTLLK 292
Query: 315 DKESHFIDFEKI 326
K++ D KI
Sbjct: 293 PKKAWEKDASKI 304
>gi|291614764|ref|YP_003524921.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans
lithotrophicus ES-1]
gi|291584876|gb|ADE12534.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans
lithotrophicus ES-1]
Length = 268
Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats.
Identities = 71/272 (26%), Positives = 120/272 (44%), Gaps = 15/272 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
MR+ L I + + + + ++ L++ N G I PD PASLTKL
Sbjct: 1 MRKALFIGLWLLANTVQATTAQPDPFPEVATAYLVELN-GKAIWAKQPDRRLPPASLTKL 59
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTA +V + +T++ +A+ + K G + + L ++ SAND
Sbjct: 60 MTALLVLERTR-----PDDIVTVTPSATHETGTRIGLKTGERFHVQDLLAAALLPSANDA 114
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI-----LS 174
A+A+ L E FV MN + LG+ THF NA G + HY++A+D++I L
Sbjct: 115 CQALADHLDGDETGFVARMNQRAHELGMRNTHFANACGHDKARHYSSAKDLSILAHALLK 174
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ D + N +G + GA G+KTG+T +G +VA A +
Sbjct: 175 YPSLLDVTSQRKLQIATLDGQHRYILESKNALIGRYDGAIGIKTGYTPNAGKCLVAYAKR 234
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+++ ++L D R + +L + F +
Sbjct: 235 DGNAVLFIMLHGHD---RWWDAVDVLDLAFDH 263
>gi|227892889|ref|ZP_04010694.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus ultunensis DSM
16047]
gi|227865295|gb|EEJ72716.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus ultunensis DSM
16047]
Length = 432
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/374 (19%), Positives = 137/374 (36%), Gaps = 47/374 (12%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPWNP 53
+ +I++A F A+ +D+N+G ++ D
Sbjct: 14 LVAVISLASCGVAFTTPVHADATSSYHADQLNLDVKSAIAIDSNSGQILYAKNADKTLPI 73
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS+TKL+T Y+ +K KK + I K A+ SN K G + T+ +
Sbjct: 74 ASMTKLVTVYLTLQAIKNKKLSWDQKVKPTAPIVKVANNTEYSNVPLKMGHSYTIKQLYQ 133
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+++SAN A+ + +++ ++K F+ M K G+ A G+
Sbjct: 134 ATLIESANGAAMLLGQTIAGSQKAFIDQMRQQVKKWGIEDAKIYTACGLPNGNLGKDAYP 193
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----KYPNTNWA----- 206
+ +A+DMAI+ + DFP+ ++ ++ L+ K K N NW
Sbjct: 194 GINKNAENTMSAKDMAIIGQNLIKDFPEVLNTTKLAHLDFKDNGKTTKMANFNWMLKGLS 253
Query: 207 --VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLL 260
+ DG+KTG T A+G + + LI V++GA +R + L+
Sbjct: 254 QYDKAYP-VDGLKTGTTDAAGACFIGTVEHSGARLITVVMGARHRDGTDPSRFIQTKKLM 312
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN---YNTQMKEAKDKE 317
+ F + + + N + + K I + DK+
Sbjct: 313 NFIFNQYRPITMTAGSQMNGAKTIEVTDGDNATTNLGLKNKTTIWDPADGKTLVAKLDKK 372
Query: 318 SHFIDFEKITLLKN 331
S K + +
Sbjct: 373 SIEAPIVKDQTVGD 386
>gi|213582478|ref|ZP_03364304.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 242
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 14/234 (5%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ LIV S ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A
Sbjct: 125 RGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFT 221
D+A+LS I P++ H + K L G N N + DG+KTG T
Sbjct: 185 DLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHT 238
>gi|229826630|ref|ZP_04452699.1| hypothetical protein GCWU000182_02006 [Abiotrophia defectiva ATCC
49176]
gi|229789500|gb|EEP25614.1| hypothetical protein GCWU000182_02006 [Abiotrophia defectiva ATCC
49176]
Length = 478
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/292 (21%), Positives = 110/292 (37%), Gaps = 30/292 (10%)
Query: 2 RQFLVIIAMAMLSNIF----------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
R F + + +L ++ + K ++D TG ++ + W
Sbjct: 24 RSFAFFLMIMVLFSVLKINTVFAADSALWPECPSIKAKEAVVMDLATGTILVSKNGNKKW 83
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNAL 108
PAS TK+MTA + K L + +K A + S+ G +TL L
Sbjct: 84 YPASTTKIMTAMLAIEHAK----SLDEEVEFTKEAIDAADRGSSSIGITPGEKLTLRECL 139
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L++ SAN++A A+A + F MN + LG + THF N G+ + HYTT
Sbjct: 140 YGLMLASANEVANALAIHTAGSIDAFADMMNEKAAELGCTNTHFRNPSGLYEDDHYTTPA 199
Query: 169 DMAILSWRIKTDFPQ------------YMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADG 215
D+A ++ + + K + N +
Sbjct: 200 DLAKIARAAIKIDAFKEIASTRKYVLPKTNLMKEKRPLSNTHQLFNPMQCPEHAYEYCYA 259
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
KTG+T + FN+V+ +G ++ VI+ A R+ + + L F
Sbjct: 260 GKTGYTREAKFNLVSYVKKGAMDVVCVIMNAESRDVQYTNTKKLTDYTFKRF 311
>gi|168184273|ref|ZP_02618937.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
gi|237794758|ref|YP_002862310.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum Ba4 str. 657]
gi|182672602|gb|EDT84563.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
gi|229261502|gb|ACQ52535.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum Ba4 str. 657]
Length = 424
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/339 (21%), Positives = 135/339 (39%), Gaps = 15/339 (4%)
Query: 5 LVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
L+I + SN+F + T +D TG +I D PAS TK +T
Sbjct: 11 LLIFIFTLTSNVFAAGDSNTEPPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKYLT 70
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A ++ + + T S+ + G T+ +N + L++ S ND+A
Sbjct: 71 ALLLAENKGKNDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLFSGNDVAY 130
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
I ++L K F MN + L L THF+ +G+ HYTTA D++++S +
Sbjct: 131 MIGDALAGNNKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSVISRAALKNP 190
Query: 182 PQY----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
Y I + NTN +G G KTG+T A+G +V + +
Sbjct: 191 WVYQSSNKKESSIVTSKGTKMTIENTNKLLGK-DGCVAGKTGYTDAAGRCLVTLFNRDGR 249
Query: 238 SLIAVILGA---LDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPN 291
++ +++G+ + + ++ + K +K + + L P+
Sbjct: 250 KILGIVMGSVYDAKDSFVFEDMKKIIDWSYNAKPSTLYKKDSSLKTETVTYNPLKIIGPS 309
Query: 292 ISEEVCTTQKEIIN-YNTQMKEAKDKESHFIDFEKITLL 329
++ +V KE + Y ++ + + ++ ID L
Sbjct: 310 VTIDVPIILKEDVTYYKNEVNDKESNKTINIDNTSYAAL 348
>gi|312978130|ref|ZP_07789875.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus
CTV-05]
gi|310895105|gb|EFQ44174.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus
CTV-05]
Length = 433
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 64/352 (18%), Positives = 131/352 (37%), Gaps = 35/352 (9%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + + +D+++G ++ AS+TKL+T Y+ +K K
Sbjct: 36 TTSSYQADQVKLNVKSAIAIDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKL 95
Query: 75 MLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ I K A+ SN K G + T+ + +++SAN A+ + +++ +
Sbjct: 96 SWDQKVKPTAPIVKVANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGS 155
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWR 176
+K F+ M K G+ A G+ + +A+DMAI+ +
Sbjct: 156 QKAFIDQMRAQVKKWGIEDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQK 215
Query: 177 IKTDFPQYMHYFQIKGLEI----KGKKYPNTNWAVG---TFLG---ADGMKTGFTCASGF 226
+ + FP+ + ++ L K N NW + + DG+KTG T A+G
Sbjct: 216 LISAFPEVLETTRLAHLNFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGA 275
Query: 227 NIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+ + L+ V++GA R + + L++ F + +
Sbjct: 276 CFIGTVQHNGARLLTVVMGARHRDGTDPARFEQTKKLMNYVFTKYRPVTMTAGSQMNGAK 335
Query: 283 QNLSNEVPNISEEVCTTQKEIIN---YNTQMKEAKDKESHFIDFEKITLLKN 331
+ N + + QK I + + +K+S +K + +
Sbjct: 336 TIKVVDGDNATTNLGLKQKTTIWDPADGKTLVASLNKKSVEAPIKKDQTVGD 387
>gi|317132474|ref|YP_004091788.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
harbinense YUAN-3]
gi|315470453|gb|ADU27057.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
harbinense YUAN-3]
Length = 371
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/267 (22%), Positives = 106/267 (39%), Gaps = 18/267 (6%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
S S A + D +TG + + + PAS+TK++TA V
Sbjct: 35 ASAGAADTSGAPALACATGLVADADTGQIYYQKDMHNRMYPASITKILTALVSVEN---- 90
Query: 73 KAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ IT+ ++ ++ S N G T+T++ + + SAND A+AIA+ +
Sbjct: 91 -GDPSDVITVPQDVTQAQGSSVANIALVPGDTITMEQLEYTMFLASANDSAIAIADHIGG 149
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-- 187
+ FV MN + LG +HF +G+ +YT+A DMA+++ + ++
Sbjct: 150 SVSGFVDMMNQKATALGAKDSHFSTPNGLPDPNNYTSAYDMALITRAAAQNPTLMRYFSA 209
Query: 188 -------FQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSL 239
++ + + KTG+ SG +V A + ++L
Sbjct: 210 RSFTLPVSALRKGAQSFTTLHKMMKKTAYYDADVEAGKTGWETMSGNTLVTVAQKNGRTL 269
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYN 266
IAV+L + + LL F
Sbjct: 270 IAVVLDGANSEAIYGDTRHLLDYAFAQ 296
>gi|315038949|ref|YP_004032517.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus amylovorus GRL
1112]
gi|312277082|gb|ADQ59722.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus amylovorus GRL
1112]
gi|327184084|gb|AEA32531.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus amylovorus GRL
1118]
Length = 432
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/374 (19%), Positives = 137/374 (36%), Gaps = 47/374 (12%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPWNP 53
F+ I++ +F A+ +D+++G ++ D
Sbjct: 14 FVAAISLISCGAVFTTPVHADATSSYQADQLNLNVKSAIAIDSDSGQILYAKNADKTLPI 73
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS+TKL+T Y+ +K KK + I K A+ SN K G + T+ +
Sbjct: 74 ASMTKLVTVYLTLQAIKNKKLSWDQKVKPTAPIVKVANNTEYSNVPLKMGHSYTIRQLYQ 133
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------- 162
+++SAN A+ + +++ ++K F+ M K G+ A G+
Sbjct: 134 ATLIESANGAAMLLGQTIAGSQKAFINQMRAQVKKWGIEDAKIYTACGLPNGNLGKDAYP 193
Query: 163 -------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG----KKYPNTNWA----- 206
+ +A+DMAI+ + DFP+ + +I L K K N NW
Sbjct: 194 GVNKNDENTMSAKDMAIIGQNLIKDFPEVLDTTKIAHLNFKDGNKVTKMANFNWMLKGLS 253
Query: 207 --VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLL 260
+ DG+KTG T A+G + + LI V++GA +R + L+
Sbjct: 254 QYDEAYP-VDGLKTGTTDAAGACFIGTVEHSGARLITVVMGARHQDGTDPSRFIQTKKLM 312
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN---YNTQMKEAKDKE 317
+ F + + + N + + + I + + + DK+
Sbjct: 313 NFIFDKYRPITMTAGSQMNGAKSIKVTDGDNATTNLGLKNRTTIWDPADDKTLVASLDKK 372
Query: 318 SHFIDFEKITLLKN 331
+ K + N
Sbjct: 373 TVEAPITKDQTIGN 386
>gi|47570219|ref|ZP_00240872.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
G9241]
gi|47553125|gb|EAL11523.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
G9241]
Length = 338
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 72/281 (25%), Positives = 129/281 (45%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L+D ++G V+ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILIDAHSGEVVYKKNEETPIQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+ L E L + IS S T+ + + L++
Sbjct: 64 SKLMTEYITLEQLNEGTIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLIHALLLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATHFMNAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E F Q MN +K+L ++ F+NA G+ + TTA ++A
Sbjct: 124 NRSALALAEHIAGNEDNFTQLMNKKAKHLKLSQSSPFLNATGMNNDTNKLSTTTATEVAK 183
Query: 173 LSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCAS 224
L+ ++ TDFP ++ ++ K K NTN + G DG++T F+
Sbjct: 184 LATQLVTDFPDVLNVTKLTSYQFTFKNTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSNNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A +GD LI+VIL A + N+ + LL GF
Sbjct: 244 NYSFVSTAKRGDTRLISVILDAENENSTFIETKKLLQYGFD 284
>gi|291524141|emb|CBK89728.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629]
Length = 465
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 62/326 (19%), Positives = 111/326 (34%), Gaps = 24/326 (7%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ P +++ NTG V+ E PAS+TK++T Y+ K + +
Sbjct: 24 TYWPEGPQINSPCAVVMEVNTGTVLYEKNSHEKHYPASITKILTTYLTILNCKMDEKVTF 83
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ + +++ + TM + + A A + L F+
Sbjct: 84 SKEAVKESSDGSSSIKRDVGEEMTMEQTLYGVMLESANECAYAAAEHTGKKLGGDYSTFI 143
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--------------F 181
MN +K LG + THF NA+G+ H+T+A DM ++S +
Sbjct: 144 DMMNKEAKELGCTDTHFNNANGLPDENHWTSAYDMGLISCAAYRNDEFRKITGTKTYIIP 203
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P H +P +++ G KTG+T + +V A + +L A
Sbjct: 204 PTNKHTEDTPLYNHHAMLHPFKSYSQFVNHDCTGGKTGYTSVANSTLVTYAEKDGLTLCA 263
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKIN-------YIIKDFYQQNLSNEVPNISE 294
VI+ A + + +LL+ F N D N +SE
Sbjct: 264 VIMNAQSPDQ-YADTNTLLNYYFSNFKALSIAENENSAATDNTPDLGVMNEHGMYAKVSE 322
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHF 320
+ + + A K +
Sbjct: 323 NYVVLPNNADFSSVKREAADMKSDNK 348
>gi|253579887|ref|ZP_04857155.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848886|gb|EES76848.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 472
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 63/275 (22%), Positives = 109/275 (39%), Gaps = 14/275 (5%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+++N A +++T+T V+ D P PAS K+MT V
Sbjct: 95 VVVTNGIDGWPQASDISSAAAIVMETSTNTVLYSKNADQPLYPASAVKIMTCLVALENSS 154
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ + T +S +N + + T++ L ++V SANDIA+ +AE + +
Sbjct: 155 LDEQVTMTATGVS--GVTDGGANISSQLDEVFTMEQCLYAIMVASANDIALQVAEHVGGS 212
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FVQ MN ++ LG + T F N G+ + TA DMA++ +
Sbjct: 213 VDAFVQTMNTRAQELGCTNTVFTNPTGLPDENQHITAHDMALIMEAAMANDTFRTIAATT 272
Query: 191 ------KGLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + N G + G K G+T ASG +V A + + L
Sbjct: 273 SYTLPATNVSGGERVLTNNFTMINSTSDGYYKPCIGGKEGYTEASGSTLVCEASKNNMKL 332
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
+ ++L T + + +LL+ GF N +
Sbjct: 333 VCIVLNGASGVT-DDEAIALLNYGFDNFAPLTIAD 366
>gi|228969874|ref|ZP_04130604.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228789827|gb|EEM37679.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus thuringiensis serovar sotto str. T04001]
Length = 374
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/318 (20%), Positives = 116/318 (36%), Gaps = 34/318 (10%)
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDN 106
AS+TK+M+ Y+V + + K + IS+ A + S + T+
Sbjct: 1 MAIASMTKMMSEYLVHEAVDKGKLKWDQKVKISEYAHKISQDRSLSNVPLENGGSYTVKE 60
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG---- 162
+ + + SAN +A+ E + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 61 LYEAMAIYSANGATIALVEEIAGKEGNFVKMMNDKSKEFGMKDYKFVNSTGLTNQDLKGY 120
Query: 163 ----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA- 206
+ +ARD AIL+ R+ DFPQ ++ +I + N NW
Sbjct: 121 HLEGTTLDEKNKMSARDCAILAQRLIQDFPQILNTAKIPKKTFQEGGKYPIDMANFNWML 180
Query: 207 ---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
+ + G DG+KTG T +G + + LI+V++ A R + L G
Sbjct: 181 KGLIKQYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKAKSHTARFDETKKLYDYG 240
Query: 264 FYNKTDRKKINYIIKDFY-------QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
F N + + V + V ++ + +
Sbjct: 241 FANFEVKNVYGKDSVVKGHETVRVANAKEKDVVVQTKQAVSLPMRKGNKDGYKKEFKVSN 300
Query: 317 ESHFIDFEKITLLKNKIT 334
+ +K + I
Sbjct: 301 KEPEAPIKKGVTISKIII 318
>gi|317132149|ref|YP_004091463.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
harbinense YUAN-3]
gi|315470128|gb|ADU26732.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
harbinense YUAN-3]
Length = 443
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 81/363 (22%), Positives = 140/363 (38%), Gaps = 38/363 (10%)
Query: 1 MRQ----FLVIIAMAMLSNIFPFLS--IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
MR+ ++ +A+A+ + P L+ + L++ +TG VI E D PA
Sbjct: 1 MRKTIMTVVLFLAVAVGISSLPVLAWDPPASVSSSTVYLVNADTGAVIYEKNADAKVYPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKL 110
S+TKLMTA + + T +T++K+ S K G +T+ L
Sbjct: 61 SITKLMTALLTMQKYSN---AMDTVLTVTKDDIAPLSGTDSSVLGLKPGEQITVRQLLYG 117
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
L+VKS ND A+ +A ++ + FV MN +K +G TH+ N G+ HYTTA+D+
Sbjct: 118 LLVKSGNDCAMVLARNVGGSVSAFVDMMNAEAKKIGADHTHYANPEGLQDPNHYTTAKDV 177
Query: 171 AILSWRIKTDFP-----QYMHYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGF 220
+++ ++ + Y K NTN + G+KTG
Sbjct: 178 YLIARQVMANDFLAGVVDTQSYTIPATNMTTAVKITNTNLLLSSGSKYYLSSVKGIKTGT 237
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALD-------RNTRNKVSASLLSMGFYNKTDRKKI 273
T +G +V+ A + AV++G + NT + +L + R+ +
Sbjct: 238 TTDAGACLVSMAQSKGMTYYAVVMGGKETTTNGVVDNTAFADTKALYQWVLGSFQMRELL 297
Query: 274 NYIIKD-------FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
+ ++Q VP + T + K K
Sbjct: 298 DTGTPQAQVPLLFAWKQQNLRLVPKEQFNALIPTAQSKATVTVVPHNLPKSVP-APVAKG 356
Query: 327 TLL 329
L+
Sbjct: 357 QLI 359
>gi|170755502|ref|YP_001781401.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B1 str.
Okra]
gi|169120714|gb|ACA44550.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
botulinum B1 str. Okra]
Length = 378
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/317 (23%), Positives = 127/317 (40%), Gaps = 14/317 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ +D +TG V+ E + AS TK+MT V + L
Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I IS+NA + S ++KG +TL L L+++S ND A+AIAE + + + F +
Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSVEDFSKL 146
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARD----MAILSWRIKTDFPQYMHYFQIKGL 193
MN + +GL +HF+ HG+ + HY+TA D A + + +
Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ Y N N + ADG+KTG+T +G +V S+ +I V+L R
Sbjct: 207 NF-TRDYHNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCT---PRW 262
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE-EVCTTQKEIINYNTQMKE 312
+ + + N +K V I++ ++ K +Y+ ++ +
Sbjct: 263 NETTKIHNYVKNNYDFKKICTKGDILDQAVFEEGSVNIIADKDIIIPFKNGADYSIKINK 322
Query: 313 AKDKESHFIDFEKITLL 329
K+ E L
Sbjct: 323 PKELNWKVKKGEDFGSL 339
>gi|255524149|ref|ZP_05391109.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
carboxidivorans P7]
gi|255512134|gb|EET88414.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
carboxidivorans P7]
Length = 358
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 78/309 (25%), Positives = 138/309 (44%), Gaps = 14/309 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
Y LD+ + V+ E AS TK+MT V + L I +S
Sbjct: 25 VDAGYAIALDSKSKVVLYEKKAYTLVPMASTTKIMTTLVAIKY-----GDLERKIEVSGK 79
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A+ S FKKG ++L L L+++S ND A+AIAE + + ++FVQ MN + +
Sbjct: 80 AAGIRGSTVGFKKGEKISLKELLYGLMLRSGNDAAIAIAEGVSGSVEEFVQLMNEYASEI 139
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAIL--SWRIKTDFPQYMHYFQIKGLEIKGKK-YPN 202
G+ THF + HG+ HYTTA D+A++ + F + + G + Y N
Sbjct: 140 GVLNTHFHSPHGLDYEDHYTTAYDLALITAKAKEIKLFNDIVSSKDVDGKTYNFTRSYHN 199
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + A+G+KTG+T +G +V S+ +I V+L R K + +
Sbjct: 200 INKILWQLPEANGVKTGYTGKAGKCLVTSSKVQGNDVIVVVLNC---RERWKETKKIYDY 256
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNI--SEEVCTTQKEIINYNTQMKEAKDKESHF 320
N ++ + ++ NL +V N+ +++ K +NY+ ++ + + +
Sbjct: 257 VNKNYQFKRIFSKG-ENAGSINLHKDVLNLEYEDDIIIPLKNKVNYSVKIVKPEKIDGVI 315
Query: 321 IDFEKITLL 329
+K+ +
Sbjct: 316 KKGDKVGNV 324
>gi|153941233|ref|YP_001391113.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum F str.
Langeland]
gi|152937129|gb|ABS42627.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F
str. Langeland]
gi|295319159|gb|ADF99536.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum F
str. 230613]
Length = 378
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/317 (23%), Positives = 127/317 (40%), Gaps = 14/317 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ +D +TG V+ E + AS TK+MT V + L
Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I IS+NA + S ++KG +TL L L+++S ND A+AIAE + + + F +
Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSVEDFSKL 146
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARD----MAILSWRIKTDFPQYMHYFQIKGL 193
MN + +GL +HF+ HG+ + HY+TA D A + + +
Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ Y N N + ADG+KTG+T +G +V S+ +I V+L R
Sbjct: 207 NF-TRDYHNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCT---PRW 262
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE-EVCTTQKEIINYNTQMKE 312
+ + + N +K V I++ ++ K +Y+ ++ +
Sbjct: 263 NETTKIHNYVKNNYDFKKICTKGDILDQAVFEEGSVNIIADKDIIIPFKNGADYSIKINK 322
Query: 313 AKDKESHFIDFEKITLL 329
K+ E L
Sbjct: 323 PKELNWKVKKGEDFGSL 339
>gi|171914424|ref|ZP_02929894.1| D-alanyl-D-alanine carboxypeptidase [Verrucomicrobium spinosum DSM
4136]
Length = 353
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/260 (25%), Positives = 115/260 (44%), Gaps = 10/260 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
ML + + A + + L++ +TG VIA D AS K++TA +V
Sbjct: 99 TMLFSSGSNVGSAPPIRAESFILVNADTGAVIAARNADTQRGAASTQKILTALIVAEA-- 156
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L + I+ + PS + G T + L +VKS+ND+A +A +
Sbjct: 157 ---GNLDQRVRIAPSDVVVEPSKLGVRPGEVYTRRDLLIAFLVKSSNDVANVLARDNAGS 213
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP----QYMH 186
+ F + MN +++LG ++F N HG+ G ++TARD++ ++W +
Sbjct: 214 VEAFARKMNARARSLGAVNSYFTNPHGLTGGGQHSTARDLSRIAWAAYNNPVVRDAVRRR 273
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
Y+ + NTN +G +GMKTG+T A+G ++++A G + +I V LG
Sbjct: 274 YYTFTFNNGRRVTLENTNEILGRMAECNGMKTGYTVAAGRCLISTAHSGRKDVILVQLGT 333
Query: 247 LDRNTRNKVSASLLSMGFYN 266
+ ++ G
Sbjct: 334 RTKYI-WDDGMVMMRWGLQR 352
>gi|73667472|ref|YP_303488.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia canis str.
Jake]
gi|72394613|gb|AAZ68890.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ehrlichia canis str.
Jake]
Length = 383
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 69/338 (20%), Positives = 135/338 (39%), Gaps = 10/338 (2%)
Query: 1 MRQFLVII---AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M +++V++ + I +++ K + D + ++ E+ D + +S++
Sbjct: 5 MSRYVVLLLSCFFGIQVCINNAIALPLQTKASQVGIFDFLSETMLLEHNIDEQFVSSSMS 64
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
LMT YV F ++K + SK A + ++ + G + + + + +I SAN
Sbjct: 65 NLMTLYVTFFYIKAGFVRMEDKFKTSKEAWQKGGNSIFLRAGQLVAVRDLINGIITTSAN 124
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D + +AE + ++++FV+ MN ++ L L+ +HF N GV +ARD+ L +
Sbjct: 125 DACITLAEGISGSQEEFVKEMNRIAQKLNLTKSHFTNVIGVQDQNQVMSARDLITLMVNL 184
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
DFP+Y H F K + + N + D M T +IVA A +
Sbjct: 185 FKDFPEYYHLFSKKDFKYNNIYQESINMLL-PDNRVDCMIAAHTDTGYGSIVA-AKHEGR 242
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ----QNLSNEVPNIS 293
+ I G + R LL F N + + N K + +
Sbjct: 243 KIFMFINGLQTKEERLSEIKQLLDYSFNNFSSKTIFNKDNKVKEIAVRGGDSKYVGAAFN 302
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
++V + + +Y+T + +K +
Sbjct: 303 KDVTISYPKG-SYDTVKTFFSHDNTISAPIKKGQEIGK 339
>gi|329122055|ref|ZP_08250663.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister micraerophilus
DSM 19965]
gi|327466862|gb|EGF12378.1| serine-type D-Ala-D-Ala carboxypeptidase [Dialister micraerophilus
DSM 19965]
Length = 323
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 68/278 (24%), Positives = 119/278 (42%), Gaps = 13/278 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
V+I + P + + + D NTG + + PAS TK++T
Sbjct: 34 IAVLIKITPPPPQKPQMKVLPQVDAVSVAIADGNTGKFLGGKDSELRVYPASTTKILTCI 93
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ L I+ NA++ + K ++L L +++ S ND AV++
Sbjct: 94 IALEE---GHDKLNDNALITPNATKQDGTCLGLKPDLPISLQELLYGMMLVSGNDAAVSV 150
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP- 182
AE++ + F++ MN +KN+G ++F+NA+G+ HYTTA DMA ++ +
Sbjct: 151 AETVGGDYETFIKLMNAKAKNIGAVNSNFVNANGLTDKNHYTTASDMAKIAVYAMKNQNF 210
Query: 183 -----QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ H + I+ + N G + GA+G+KTG T A+G +VASA +
Sbjct: 211 RKIVKEPFHMMTYRDGTIRRIENRNEFLESG-YEGANGIKTGMTEAAGDCLVASAEREGH 269
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
++ I R + LL GF + +
Sbjct: 270 LVVVSIYN---DENRWEDVKKLLDYGFDAIKNEEMYEK 304
>gi|229196731|ref|ZP_04323474.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
gi|228586806|gb|EEK44881.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
Length = 338
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/281 (26%), Positives = 130/281 (46%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ +++ + F + L+D ++G V+ + P A+L
Sbjct: 4 LKKFTILLLSFVITALIVLYFYLYVNGPIIQAKSAILIDAHSGEVVYTKNEETPIQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+ L E L + IS S T+ + L L++
Sbjct: 64 SKLMTEYITLEQLNEGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATHFMNAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E KF Q MN +K+L ++ F+NA G+ + TTA ++A
Sbjct: 124 NRSALALAEHIAGNEDKFTQLMNEKAKHLKLSQSSPFLNATGMNNDTNKLSTTTAIEVAK 183
Query: 173 LSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCAS 224
L+ ++ TDFP ++ ++ K K NTN + G DG++T F+
Sbjct: 184 LATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A +GD LI+VIL A + N+ + LL GF
Sbjct: 244 NYSFVSTAKRGDTRLISVILDAENENSTFIETKKLLQYGFD 284
>gi|257784553|ref|YP_003179770.1| Serine-type D-Ala-D-Ala carboxypeptidase [Atopobium parvulum DSM
20469]
gi|257473060|gb|ACV51179.1| Serine-type D-Ala-D-Ala carboxypeptidase [Atopobium parvulum DSM
20469]
Length = 407
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/264 (24%), Positives = 114/264 (43%), Gaps = 10/264 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
SN + + + D+ G+V+ PD AS+TK+MTA V
Sbjct: 47 SSNKSSVTDEPKLTEATTAIVTDSQ-GNVLWSKNPDQELPMASITKVMTAIVALDSG--- 102
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L P I+ E + T TL + +++V SAND A IA ++ +++
Sbjct: 103 -VNLDEPCKITVPDLEEGSQVAGLTSDDTPTLRQLIMMMLVYSANDAAYNIAINVSGSQQ 161
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F MN + +G++ T F N HG+ GHY+TARD+A++ + +P +
Sbjct: 162 AFADQMNKKAAEIGMTHTQFQNPHGLDADGHYSTARDLALMGRYAREHYPLIASAVHTRS 221
Query: 193 LEI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ + + +T+ + T+ G G+KTG + + AS +G+ +L +LG
Sbjct: 222 YTTTVGGEQRTFHSTDDLMDTYRGLLGIKTGAEDSGTAFLGAS-KRGNITLYTCVLGCET 280
Query: 249 RNTRNKVSASLLSMGFYNKTDRKK 272
R +A L++ + N
Sbjct: 281 IQGRFDDTAILMNWAYRNYNRISV 304
>gi|226365711|ref|YP_002783494.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4]
gi|226244201|dbj|BAH54549.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus
B4]
Length = 426
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 54/262 (20%), Positives = 92/262 (35%), Gaps = 21/262 (8%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ + + D ++G V+A P + PAS K++ A V L
Sbjct: 92 APALPADIAASGWVVADIDSGDVLAAKDPHGRYRPASTIKMLLALVALDE-----LDLDK 146
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T + + S K T ++ L++ S ND A +A + V+ M
Sbjct: 147 TVTATAEDAAVEGSAVGIGKNGQYTNRQLMQGLVMASGNDAAHLLAR-QLGGDAATVEKM 205
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + LG T G+ G ++ D+A++ +
Sbjct: 206 NRLADTLGAHDTRTATPSGLDGPGMSSSPFDLALIFHNAMKNPTFAELISTETVQFPGFP 265
Query: 199 K--------------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
K N N + + GA G KTGFT + V A + L+ ++
Sbjct: 266 KDPAIPEDQDRPPFALANDNQLLYNYPGALGGKTGFTDDARHTYVGGADHDGRRLMVTLM 325
Query: 245 GALDRNTR-NKVSASLLSMGFY 265
GA + R + +A LL GF
Sbjct: 326 GAEAQPIRPWEQAARLLDYGFA 347
>gi|256843728|ref|ZP_05549216.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
125-2-CHN]
gi|256615148|gb|EEU20349.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
125-2-CHN]
Length = 433
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 129/349 (36%), Gaps = 35/349 (10%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ + + +D+++G ++ AS+TKL+T Y+ +K K
Sbjct: 39 SYQADQVKLNVKSAIAIDSDSGQILYAKNATQTLPIASMTKLVTVYLALQAIKNNKLSWD 98
Query: 78 TPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ I K A+ SN K G + T+ + +++SAN A+ + +++ ++K
Sbjct: 99 QKVKPTAPIVKVANNAEYSNVPLKMGHSYTIKQLYQATLIESANGAAMLLGQTIAGSQKA 158
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKT 179
F+ M K G+ A G+ + +A+DMAI+ +
Sbjct: 159 FIDQMRAQVKKWGIEDAKIYTACGLPNGNLGKDAYPGVNKNAENSMSAKDMAIVGQNLIK 218
Query: 180 DFPQYMHYFQIKGLEI----KGKKYPNTNWAVG---TFLG---ADGMKTGFTCASGFNIV 229
DFP+ + ++ L+ K N NW + + DG+KTG T A+G +
Sbjct: 219 DFPEVLDTTKLAHLDFKDAGHTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGACFI 278
Query: 230 ASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285
+ LI V++GA R + L++ F + +
Sbjct: 279 GTVQHNGARLITVVMGARHRDGTDPARFMQTKKLMNYIFTKYRPVTMTAGSQMNGAKTIK 338
Query: 286 SNEVPNISEEVCTTQKEIIN---YNTQMKEAKDKESHFIDFEKITLLKN 331
+ N + + K I + + +K+S +K + +
Sbjct: 339 VTDGDNATTNLGLKSKTTIWDPADGKTLVASLNKKSVEAPIKKDQTVGD 387
>gi|297621737|ref|YP_003709874.1| putative D-alanyl-D-alanine carboxypeptidase [Waddlia chondrophila
WSU 86-1044]
gi|297377038|gb|ADI38868.1| putative D-alanyl-D-alanine carboxypeptidase [Waddlia chondrophila
WSU 86-1044]
Length = 426
Score = 138 bits (346), Expect = 1e-30, Method: Composition-based stats.
Identities = 78/360 (21%), Positives = 141/360 (39%), Gaps = 36/360 (10%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A+L I L++ +TG ++ E PASLTK+ TA
Sbjct: 5 FCLIFALLLANSILNGIEIKIHADSAILMNADTGAILYEKNGKKEHFPASLTKIATAIYT 64
Query: 66 FSFLKEKKAMLTTPIT-----ISK------------NASEYPPSNSTFKKGSTMTLDNAL 108
++K + T +S+ S+ KKG ++L + L
Sbjct: 65 LQLREQKLDKMLTAEHEAIASVSEEEMVRSNYSLPAYWLTRGTSHIGIKKGEELSLRDLL 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
++V S D + IA + T F++ +N K LG ++T+ MN HG+ H +TA
Sbjct: 125 YGMMVASGGDASNMIALYMGGTIPVFMEELNLYLKELGCTSTYLMNPHGLHHPRHVSTAY 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY---------PNTNWAVGTFLGADGMKTG 219
DMA+L+ + ++ + K + A G+KTG
Sbjct: 185 DMAVLTREALKNSTFREIVKTVRCQRPETNKQKATTLIQTNRLLRKGKYYYSKAIGVKTG 244
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
+T + N+VA+A GD++LIAV + DR + L + F +KI+ +
Sbjct: 245 YTSQAKNNLVAAAKDGDRTLIAVFMHCDDREKMFLDAKQLFNKAFK----EEKISRKVFQ 300
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYN-TQMKEAKDK-----ESHFIDFEKITLLKNKI 333
Q ++ V ++ + T K + ++ +E K K + + +K + +
Sbjct: 301 AGPQKMTLRVEGAAKSIATYIKNDVVFDFYPSEEPKLKCLLKWNAVSLPVQKDQQVGVLV 360
>gi|153854350|ref|ZP_01995649.1| hypothetical protein DORLON_01644 [Dorea longicatena DSM 13814]
gi|149753125|gb|EDM63056.1| hypothetical protein DORLON_01644 [Dorea longicatena DSM 13814]
Length = 536
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/339 (18%), Positives = 122/339 (35%), Gaps = 37/339 (10%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
++D TG ++ D PAS+TK++T+ + + L+ +
Sbjct: 88 PKGPGTYGEAAIVMDAGTGSILYAKNIDEHEYPASITKVLTSLIALKY-----GNLSDKV 142
Query: 81 TISKNASEYP-------PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S + + L L ++A +A + ++
Sbjct: 143 TFSNDCISFMQPGDSSVGLKEGNVISLEQALYATLLASANEAAYAVAENVGKNAGHDYDW 202
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F+Q MN K+LG ++F+NA+G+ HYT ARDMA++ +P+++ Q +
Sbjct: 203 FIQQMNEECKSLGGKNSNFVNANGLHDDNHYTCARDMALIGR-EIWRYPEFLKICQEQSY 261
Query: 194 ------EIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ +P + + KTG+T + ++ A G+ L+ V
Sbjct: 262 KIPASDTTEEHVFPQHHKMLIKENKNYYQYVVAGKTGYTSNALSTLITLADNGNMKLVCV 321
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ--------QNLSNEVPNISE 294
+L N + +L F N + + D + Q+ + + SE
Sbjct: 322 VLRTHGVNI-YPDTKNLFEYAFNNFQKIQVADEKKPDEVEKFISAADSQSAVSAQSDGSE 380
Query: 295 EVCTTQKEIINY----NTQMKEAKDKESHFIDFEKITLL 329
+ + Q Y + + KD ID+E +
Sbjct: 381 DTESVQTGGNEYQPLEDGYVILPKDVSYKDIDYEITDVD 419
>gi|296186607|ref|ZP_06855009.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
carboxidivorans P7]
gi|296048644|gb|EFG88076.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
carboxidivorans P7]
Length = 379
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 81/345 (23%), Positives = 148/345 (42%), Gaps = 29/345 (8%)
Query: 5 LVIIAMAMLSNIFPFLSIAET---------------NKLPYYTLLDTNTGHVIAENYPDH 49
++I+ + +++ P A Y LD+ + V+ E
Sbjct: 10 ILILTVFIVTLFVPIDVRALENSNDNGKENVTKDIYVDAGYAIALDSKSKVVLYEKKAYT 69
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS TK+MT V + L I +S A+ S FKKG ++L L
Sbjct: 70 LVPMASTTKIMTTLVAIKY-----GDLERKIEVSGKAAGIRGSTVGFKKGEKISLKELLY 124
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
L+++S ND A+AIAE + + ++FVQ MN + +G+ THF + HG+ HYTTA D
Sbjct: 125 GLMLRSGNDAAIAIAEGVSGSVEEFVQLMNEYASEIGVLNTHFHSPHGLDYEDHYTTAYD 184
Query: 170 MAIL--SWRIKTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVGTFLGADGMKTGFTCASGF 226
+A++ + F + + G + Y N N + A+G+KTG+T +G
Sbjct: 185 LALITAKAKEIKLFNDIVSSKDVDGKTYNFTRSYHNINKILWQLPEANGVKTGYTGKAGK 244
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+V S+ +I V+L R K + + N ++ + ++ NL
Sbjct: 245 CLVTSSKVQGNDVIVVVLNC---RERWKETKKIYDYVNKNYQFKRIFSKG-ENAGSINLH 300
Query: 287 NEVPNI--SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+V N+ +++ K +NY+ ++ + + + +K+ +
Sbjct: 301 KDVLNLEYEDDIIIPLKNKVNYSVKIVKPEKIDGVIKKGDKVGNV 345
>gi|295109905|emb|CBL23858.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
Length = 412
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/375 (20%), Positives = 134/375 (35%), Gaps = 50/375 (13%)
Query: 4 FLVIIAMAMLSNIFPFLS------------IAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
F+ +I + L F + +++ L+D ++G ++ E + P
Sbjct: 8 FIYVILICNLYCQFSVHAGSLDHAILMVPQLSDDLYALSAVLMDADSGRILYEKEGEMPR 67
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS TK++T + + +S NA+ P +KG L++ L L
Sbjct: 68 PNASTTKVLTCILALENGDG-----DDYVQVSANAASQPQVKLGLQKGEQYYLEDLLYSL 122
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTA 167
+++S ND AVAIAE + + K F MN ++ +G + THF+ +G+ H+TTA
Sbjct: 123 LLQSHNDSAVAIAEHIGGSVKGFSDLMNAKARKIGCTDTHFITPNGLDAEDSSGTHHTTA 182
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFT 221
D+A + + ++ Q K + NTN G KTGFT
Sbjct: 183 SDLARIMRYAIKN-KVFLKIAQTKEYSFSDLSKKRTFSVHNTNALFSMTDGVLAGKTGFT 241
Query: 222 CASGFNIVASAIQGDQSLIAVILGALD---RNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+G+ V + + D++ I +L A + + + LL G N R
Sbjct: 242 GDAGYCYVCAVQKDDRTFIIALLAAGWPGHKTYKWHDTLKLLDYGKNNFYYRSFWQEPDL 301
Query: 279 ---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD----------KESH 319
+ N +P+ + Q K+ K+
Sbjct: 302 SYIPVKDGIPEITSHTDNLLPDGRIYIGGRINATEKEKQQKILLKNDDRLQYQVCLKDEL 361
Query: 320 FIDFEKITLLKNKIT 334
K + +
Sbjct: 362 QAPVRKGEQIGRVVY 376
>gi|152974802|ref|YP_001374319.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023554|gb|ABS21324.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
391-98]
Length = 423
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/287 (22%), Positives = 123/287 (42%), Gaps = 22/287 (7%)
Query: 4 FLVIIAMAMLSNI----------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
F+++I + ++ + P + +D TG V+ + P
Sbjct: 10 FVLVICLFFVTPLPLHAETGMEPAPAPGQGPNVFGKFAVSIDAKTGDVLYDKNAHEHAFP 69
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLL 111
AS+TK++TA ++ K T+S+ A + SN F+ G T+ + AL +L
Sbjct: 70 ASMTKVLTAILLMEHTK-----PEEQFTLSQAALDQEKSNYQLEFQAGETVDRNTALMIL 124
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+V SAND+A AI E + + + F MN +K LG + +HF+ +G+ HYTTA DMA
Sbjct: 125 MVLSANDVAYAIGEHIGGSIENFAHMMNEKAKQLGATDSHFVTPNGLHDPNHYTTAYDMA 184
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNI 228
+++ +P+ + K + + + + + + G KTGFT + +
Sbjct: 185 MITR-GVQKYPEILQAMNTKRTTVTTSRQTVSIFNKANYFENPYSIGGKTGFTNEARNTL 243
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
V + +I V++ + + + F T + ++
Sbjct: 244 VLLNEKDGNRIINVVMASQKPEI-YEDMKQMAEYAFPQFTKQLVLDK 289
>gi|259048108|ref|ZP_05738509.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
ATCC 49175]
gi|259035169|gb|EEW36424.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
ATCC 49175]
Length = 465
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/374 (19%), Positives = 142/374 (37%), Gaps = 42/374 (11%)
Query: 1 MRQFLVIIA-MAMLSNIFPFLSIAETN-----------KLPYYTLLDTNTGHVIAENYPD 48
M++F+ ++ AM + F + A+ + Y ++ +G ++ +N D
Sbjct: 8 MKKFVCALSIFAMSATSFTPVIYAQDAAKEKEEAAAIQDVQSYIAIEQTSGKILMQNNQD 67
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----YPPSNSTFKKGSTMTL 104
AS++K+++ Y++ +K+ + T I IS A++ Y SN T+
Sbjct: 68 EVRGIASMSKMISQYLILESIKKGEITWETKIPISARANQLSANYNLSNVPLWPNEKYTI 127
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---- 160
+ + SAN +AIAE + +E +++ M G+ +N G+
Sbjct: 128 KELFDAISIYSANAATLAIAEYIGGSEANWIERMKAKLNEWGIKDATIINVTGLPNKYGG 187
Query: 161 ----------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-----KYPNTNW 205
+ +AR +AI++ + DFP+ + I + K N N+
Sbjct: 188 SEKNPAFGDEDENSMSARSVAIIAKNLVNDFPEILKISSIPTQTFRPNGSGTTKMDNFNY 247
Query: 206 AVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+ + G G+KTG + + G +I +A + S+I V +G+ + R KV+ LL
Sbjct: 248 LLPGLLFEYEGVTGLKTGTSESGGASITTTATRNGFSVIVVSMGSKEPLNRFKVTRHLLD 307
Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
F + + E E + + A + I
Sbjct: 308 ELFKKYEGLIVGSPGKSVQNLAPIPLEG-GTEETLSVDYGKPFVAAVPKGTALSQ--IKI 364
Query: 322 DFEKITLLKNKITK 335
F + LK + K
Sbjct: 365 GFIPLDELKTEDGK 378
>gi|282849251|ref|ZP_06258636.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella parvula ATCC
17745]
gi|282580955|gb|EFB86353.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella parvula ATCC
17745]
Length = 285
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 71/258 (27%), Positives = 117/258 (45%), Gaps = 11/258 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
S + L+D +T ++ PD +PAS TK++T K
Sbjct: 29 ASVAQAAYIAPPSTVGEAVVLIDADTKEILFAKNPDKWMHPASTTKMVTLLTALEL---K 85
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L TIS A+ SN + G +TL+ L+ ++V S ND AV +AE++ +
Sbjct: 86 GTQLDELATISSYATSMEESNLGVRVGDQITLEGVLEGMMVASGNDAAVVVAENVSGSVD 145
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYF 188
KF + M + G + F+N HG+ Q GH++TARD+A++ Y+
Sbjct: 146 KFAKDMTRIAAKAGAKNSVFLNPHGLTQKGHHSTARDLAMIAAYGMKYQMFRDKVANDYY 205
Query: 189 QIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + TN + + GA+G+KTGFT A+G ++ASA + ++I V+L
Sbjct: 206 KVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRKGHTMIVVMLN-- 263
Query: 248 DRNTRNKVSASLLSMGFY 265
+ R + L GF
Sbjct: 264 -DDNRWDEAVQFLDYGFK 280
>gi|325663285|ref|ZP_08151735.1| hypothetical protein HMPREF0490_02476 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470739|gb|EGC73969.1| hypothetical protein HMPREF0490_02476 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 547
Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats.
Identities = 68/333 (20%), Positives = 132/333 (39%), Gaps = 24/333 (7%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN ++D N+G ++ D PAS+TK+MTA V +
Sbjct: 104 SNALKNWPEGPGIFAESGIIMDMNSGAILYAKNIDEKEFPASITKIMTALVALENSE--- 160
Query: 74 AMLTTPITISKN---ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
LT + ++ EY ++ + G +T+++AL +++ SAN+++ AIA+++
Sbjct: 161 --LTDKVHFTEESVAFLEYGDASIGMQPGEEITMEDALYGMLLASANEVSYAIADTVGNG 218
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
F++ MN ++ LG + THF N HG+ HY +ARDMA+++ ++
Sbjct: 219 YDNFIRMMNEKAEELGCTNTHFTNPHGLHDEEHYVSARDMALIAA-AAFQHEEFRKITNT 277
Query: 191 KGLEIKGKKYPNTNWAVG------------TFLGADGMKTGFTCASGFNIVASAIQGDQS 238
I N + G KTG+T + +V+ G+
Sbjct: 278 YEHRIPPTNLVNEERVFQQYHQMLYDGTDTFYEPCVGGKTGYTDQALSTLVSYLDNGELQ 337
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE--VPNISEEV 296
L++V L + + ++ F N + ++ + V + E
Sbjct: 338 LVSVNLKTHGVHV-YPDTKNMAEYVFNNFKKIPLEGKDLPKGVKETEEDAYIVAPKNVEF 396
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ EI+ + K K ++ D + + +
Sbjct: 397 QDVKAEIVPEDKSGKSKKGTLTYTYDGQTVGVS 429
>gi|325681439|ref|ZP_08160965.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
gi|324106929|gb|EGC01219.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
Length = 387
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 70/347 (20%), Positives = 132/347 (38%), Gaps = 18/347 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK---------LPYYTLLDTNTGHVIAENYPDHPWN 52
+ ++ I + +L + P AET ++ +TG V+ E D
Sbjct: 6 KLTIMFICLTVLCGLLPDRVCAETVPVEDLLASMPADEIIAVECSTGKVLMEKNSDITAE 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
+ L KLM + ++ + L +T S NA+ P K +T+D LK +
Sbjct: 66 VSHLAKLMLVLLTAEKIENGELSLDDVVTASANANSQPAPQIWLDKNEKITVDELLKSIT 125
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V +AND AVA+AE + T + V MN ++ L + +T + + G+ +H A +
Sbjct: 126 VSNANDGAVALAEHIFGTSESAVAEMNRKAELLDMRSTTYADVCGIDEHTLSDAADTAVL 185
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
S +K + ++ + + N N V ++ G GMK T A+G V +A
Sbjct: 186 ASELVKHEMLIPYFTSWLEYVRDGKAELVNLNRPVRSYKGITGMKACSTSAAGECAVVTA 245
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------DRKKINYIIKDFYQQNLS 286
+ + VI+G R + +S LL M F + + + + I + +Q
Sbjct: 246 QRSGMDIAVVIIGGDKRENVDDMSKKLLDMCFESYSLYSPEPTAEMLKKIPVNGGEQKKV 305
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ + + + ++ + K +
Sbjct: 306 AVTFGELPDAVIPKGSSSGFEMKFEKEEQL---TAPVRKGQVCGRLT 349
>gi|229103155|ref|ZP_04233841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
gi|228680260|gb|EEL34451.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
Length = 338
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/281 (25%), Positives = 117/281 (41%), Gaps = 16/281 (5%)
Query: 1 MRQF----LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F L I A++ F + L+D N+G VI + + P A+L
Sbjct: 4 LKKFTILLLSFIITALIVLYFYLYVNGPIIQAKSAILIDANSGEVIYKKNEETPIQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L K L + IS + + T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNNGKIQLDESVKISNELFQAETTPMQVTAKDKTTVRDLLHALLLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF----MNAHGVVQHGHYTTARDMAI 172
N A+A+AE + E F MN +K L LS A+ TTA+D A
Sbjct: 124 NRSALALAEHIGGNEDNFTTLMNEKAKQLQLSQPSPFLNSTGANQDTNKQSNTTAKDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ + DFP ++ ++ + K + N + G DG++T F+
Sbjct: 184 LATHLVKDFPNVLNMTKLTSYQFTFKNFQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ V +A GD LI+VIL + + NT + LL GF
Sbjct: 244 NNSFVGTAKLGDTRLISVILESDEENTTFIETKKLLQYGFE 284
>gi|229074990|ref|ZP_04207992.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
gi|228708047|gb|EEL60218.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
Length = 338
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/281 (25%), Positives = 118/281 (41%), Gaps = 16/281 (5%)
Query: 1 MRQF----LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F L I A++ F + L+D N+G VI + + P A+L
Sbjct: 4 LKKFTILLLSFIITALIVLYFYLYVNGPIIQAKSAILIDANSGEVIYKKNEETPIQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L + + L + IS + + T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDGQIQLDESVKISNELFQAETTPMQVTAKDKTTVRDLLHALLLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF----MNAHGVVQHGHYTTARDMAI 172
N A+A+AE + E F MN +K L LS A+ TTA+D A
Sbjct: 124 NRSALALAEHIGGNEDNFTMLMNEKAKQLQLSQPSPFLNSTGANQDTNKQSNTTAKDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ + DFP ++ ++ + K + N + G DG++T F+
Sbjct: 184 LATHLVKDFPNVLNMTKLTSYQFTFKNFQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ V +A GD LI+VIL + + NT + LL GF
Sbjct: 244 NNSFVGTAKLGDTRLISVILESDEENTTFIETKKLLQYGFE 284
>gi|295090867|emb|CBK76974.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
saccharolyticum K10]
Length = 528
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/338 (21%), Positives = 126/338 (37%), Gaps = 30/338 (8%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P ++D ++G V+ + PAS+TKL+TA VV
Sbjct: 27 ALAAPEWPSDTGTMADIGIVIDADSGAVLFGQGIHNQSPPASITKLLTALVVVENS---- 82
Query: 74 AMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L +T S +A + ++G +++ + L LL+++S+N A A+AE +
Sbjct: 83 -SLDDMVTFSHDAVYNVESGSGNKKNIEEGDVLSVRDCLYLLLLQSSNQAANALAEHVAG 141
Query: 130 TEKKFVQHMNNTSKNLGL-SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ FV+ MN LG THF N G+ + +A DMA+++ D Q
Sbjct: 142 SRDAFVEMMNEKVSELGCVDDTHFANPSGLNDDTQHVSAYDMALIAK-AAFDNQQVYEIA 200
Query: 189 QIKGLE-------IKGKKYPNTNW--------AVGTFLGADGMKTGFTCASGFNIVASAI 233
K + G N + + + A KTG+T +G +V A
Sbjct: 201 STKSYKLPATINNPNGVTCTNEHRLIITEDETSELYYPAAKAGKTGYTSLAGNTLVTCAE 260
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ + LI+VIL +LL GF + + + E ++
Sbjct: 261 EDGRCLISVILKGQPSPNYFLDGKNLLQFGFERFQNLSV----PDNETRYVTGEESVAVN 316
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ I T + KD E +T+L +
Sbjct: 317 GTEYSPSDLEIEAGTVITIPKDASFQDAALELVTVLPD 354
>gi|218231994|ref|YP_002370166.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
B4264]
gi|218159951|gb|ACK59943.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
B4264]
Length = 423
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 124/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K T + + +
Sbjct: 343 KIGTELDKSLSEDGHLVAPIKKDTKVGSITLE 374
>gi|58337864|ref|YP_194449.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus
NCFM]
gi|58255181|gb|AAV43418.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus
NCFM]
Length = 432
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 71/356 (19%), Positives = 136/356 (38%), Gaps = 35/356 (9%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + + +D+N+G ++ D AS+TKL+T Y+ + +K KK
Sbjct: 35 TSSSYRNNEVNLDVKSAIAIDSNSGQILYAKNADKTLPIASMTKLITVYLTLNAIKNKKL 94
Query: 75 MLTTPIT----ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ I K A+ SN K G + T+ + +++SAN A+ + +++ +
Sbjct: 95 SWNQKVKPTASIVKVANNAEYSNVPLKMGHSYTIRQLYQATLIESANGAAMLLGQTIAGS 154
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWR 176
+KKF+ M K G+ A G+ + +A+DMAI+
Sbjct: 155 QKKFIDQMRAQVKKWGIEDAEIYTACGLPNGNVGKDAYPGVNKNAENTMSAKDMAIVGQH 214
Query: 177 IKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVG---TFLG---ADGMKTGFTCASGF 226
+ ++P+ + ++ L+ K K N NW + + DG+KTG T A+G
Sbjct: 215 LLKEYPEILDTTKLAHLDFKDGNKTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGA 274
Query: 227 NIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+ + LI V++GA +R + L+S F + +
Sbjct: 275 CFIGTVEHNGARLITVVMGARHQDGTDPSRFIQTKKLMSFIFNKYRPVTMTAGSQINGAK 334
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMK---EAKDKESHFIDFEKITLLKNKITK 335
+ + + + K I K + +K++ EK + N K
Sbjct: 335 SIKVTDGKDATTNIGLKNKTTIWDPADGKTLTASLNKKTIDAPLEKNQTVGNYQLK 390
>gi|229097094|ref|ZP_04228060.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
gi|229116057|ref|ZP_04245450.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
gi|228667392|gb|EEL22841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
gi|228686323|gb|EEL40235.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
Length = 338
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/281 (25%), Positives = 118/281 (41%), Gaps = 16/281 (5%)
Query: 1 MRQF----LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F L I A++ F + L+D N+G VI + + P A+L
Sbjct: 4 LKKFTILLLSFIITALIVLYFYLYVNGPIIQAKSAILIDANSGEVIYKKNEETPIQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L + K L + IS + + T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDGKIQLDESVKISNELFQAETTPMQVTAKDKTTVRDLLHALLLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF----MNAHGVVQHGHYTTARDMAI 172
N A+A+AE + E F MN +K L LS A+ TTA+D A
Sbjct: 124 NRSALALAEHIGGNEDNFTTLMNEKAKQLQLSQPSPFLNSTGANQDTNKQSNTTAKDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ + DFP ++ ++ + K + N + G DG++T F+
Sbjct: 184 LATHLVKDFPNVLNMTKLTSYQFTFKNFQVFNTNKMIYSLNENIKFQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ V +A GD LI+VIL + + NT + LL GF
Sbjct: 244 NNSFVGTAKLGDTRLISVILESDEENTTFIETKKLLQYGFE 284
>gi|302337982|ref|YP_003803188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Spirochaeta
smaragdinae DSM 11293]
gi|301635167|gb|ADK80594.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Spirochaeta
smaragdinae DSM 11293]
Length = 434
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 63/296 (21%), Positives = 115/296 (38%), Gaps = 23/296 (7%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
L+D TG ++ + D PAS+TKL++ ++++ ++E + + I +
Sbjct: 67 PELSCRSAVLIDDETGTLLFVKHGDEVIPPASMTKLVSLHLIYREIEEGRLSIDQEIIVP 126
Query: 84 KNASEYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
A + G ++ L + ++ L + S ND AV +A+ + + +V MN
Sbjct: 127 DFADFRSAPPRSSLMFLQAGQSVRLIDLMRGLALPSGNDAAVLVADLIAGSTPAYVAMMN 186
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE----- 194
+ + LG S+ F ++ G +H T + + T +
Sbjct: 187 DEMRRLGFSSIFFEDSSGYSEHNRATALDFARFARFYVDTHPESLKELHSLTSFSYPKTE 246
Query: 195 --------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
PN N VG DG+KTG+ SG+N+ +A + LIAV++G
Sbjct: 247 NENGVKAVYGSVTQPNHNSLVGRHPWVDGLKTGYIDESGYNVALTAETRGRRLIAVLMGG 306
Query: 247 LDRNTRNK------VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296
N+R+ +LLS GFY T + F ++ +
Sbjct: 307 PGENSRDGDLYRVIDGTNLLSYGFYRFTVIIPDLPKLPPFSVIGGKERSVEVAVPL 362
>gi|295693488|ref|YP_003602098.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus ST1]
gi|295031594|emb|CBL51073.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus ST1]
Length = 433
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 64/352 (18%), Positives = 132/352 (37%), Gaps = 35/352 (9%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + + +D+++G ++ AS+TKL+T Y+ +K K
Sbjct: 36 TTSSYQADQVKLNVKSAIAIDSDSGQILYAKNAAQTLPIASMTKLVTVYLTLQAIKNHKL 95
Query: 75 MLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ I K A+ SN K G + T+ + +++SAN A+ + +++ +
Sbjct: 96 SWDQKVKPTAPIVKVANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGS 155
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWR 176
+K F+ M + K G+ A G+ + +A+DMAI+ +
Sbjct: 156 QKAFIDQMRDQVKKWGIEDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQK 215
Query: 177 IKTDFPQYMHYFQIKGLEI----KGKKYPNTNWAVG---TFLG---ADGMKTGFTCASGF 226
+ + FP+ + ++ L K N NW + + DG+KTG T A+G
Sbjct: 216 LISAFPEVLETTRLAHLNFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGA 275
Query: 227 NIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+ + L+ V++GA R + + L++ F + +
Sbjct: 276 CFIGTVQHNGARLLTVVMGARHRDGTDPARFEQTKKLMNYVFTKYRPVTMTAGSQMNGAK 335
Query: 283 QNLSNEVPNISEEVCTTQKEIIN---YNTQMKEAKDKESHFIDFEKITLLKN 331
+ N + + QK I + + +K+S +K + +
Sbjct: 336 TIKVVDGDNATTNLGLKQKTTIWDPADGKTLVASLNKKSVEAPIKKDQTVGD 387
>gi|30023419|ref|NP_835050.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|229130636|ref|ZP_04259592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
gi|229147928|ref|ZP_04276269.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
gi|296505812|ref|YP_003667512.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
gi|29898980|gb|AAP12251.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|228635578|gb|EEK92067.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
gi|228652975|gb|EEL08857.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
gi|296326864|gb|ADH09792.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
Length = 423
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 124/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K T + + +
Sbjct: 343 KIGTELDKSLSEDGHLVAPIKKDTKVGSITLE 374
>gi|227904514|ref|ZP_04022319.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus ATCC
4796]
gi|227867723|gb|EEJ75144.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus acidophilus ATCC
4796]
Length = 432
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 71/356 (19%), Positives = 136/356 (38%), Gaps = 35/356 (9%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + + +D+N+G ++ D AS+TKL+T Y+ + +K KK
Sbjct: 35 TSSSYRNNEVNLDVKSAIAIDSNSGQILYAKNADKTLPIASMTKLITVYLTLNAIKNKKL 94
Query: 75 MLTTPIT----ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ I K A+ SN K G + T+ + +++SAN A+ + +++ +
Sbjct: 95 SWNQKVKPTASIVKVANNAEYSNVPLKMGHSYTIRQLYQATLIESANGAAMLLGQTIAGS 154
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWR 176
+KKF+ M K G+ A G+ + +A+DMAI+
Sbjct: 155 QKKFIDQMRAQVKKWGIEDAEIYTACGLPNGNVGKDAYPGVNKNAENTMSAKDMAIVGQH 214
Query: 177 IKTDFPQYMHYFQIKGLEIKG----KKYPNTNWAVG---TFLG---ADGMKTGFTCASGF 226
+ ++P+ + ++ L+ K K N NW + + DG+KTG T A+G
Sbjct: 215 LLKEYPEILDTTKLAHLDFKDGNKTTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGA 274
Query: 227 NIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+ + LI V++GA +R + L+S F + +
Sbjct: 275 CFIGTVEHNGARLITVVMGARHQDGTDPSRFIQTKKLMSFIFNKYRPVTMTAGSQINGAK 334
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMK---EAKDKESHFIDFEKITLLKNKITK 335
+ + + + K I K + +K++ EK + N K
Sbjct: 335 SIKVTDGKDATTNIGLKNKTTIWDPADGKTLTASLNKKTIDAPLEKNQTVGNYQLK 390
>gi|325686780|gb|EGD28805.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK72]
Length = 409
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/361 (17%), Positives = 124/361 (34%), Gaps = 41/361 (11%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ +D +G ++ E + P S+T L+T Y+V+ +
Sbjct: 2 TASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDL 61
Query: 75 MLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
T + IS A P ++ + + + + ++ S+N +A+AE + +E
Sbjct: 62 TADTYVDISDYAYNLTSNPNISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKVGGSE 121
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVV------------------------QHGHYTTA 167
+ FV+ M K G+ +N+ G+ + +A
Sbjct: 122 ENFVEMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASASTSKKSKDTENKFSA 181
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCA 223
D+A++S + DFPQ +I G N N+ G DG+K G +
Sbjct: 182 YDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDK 241
Query: 224 SGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI------ 273
G + VA+ + +I V+L D R +ASL++ N T +
Sbjct: 242 GGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQNFTQTTIVAEGEAY 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
N ++ ++ +++ + +++ +K T L
Sbjct: 302 NKSKSTVIDGKQKTVPAVARKDFTIIERIANQAEHKVEFSTNEKGFQAPLKKNTELGTLT 361
Query: 334 T 334
Sbjct: 362 Y 362
>gi|288921678|ref|ZP_06415947.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp.
EUN1f]
gi|288346947|gb|EFC81255.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Frankia sp.
EUN1f]
Length = 572
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 59/266 (22%), Positives = 113/266 (42%), Gaps = 12/266 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ + + D +G ++A + P+ P PAS K++TA V
Sbjct: 86 TSVPEPAGITAEAWMVADAISGAILAAHNPNLPDLPASTMKMLTALTVLP-----SLPPD 140
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+TIS A+ + G T+ + +++ S ND VA+ E+ ++
Sbjct: 141 RVVTISDEAARVDGTRVGLVPGVRYTVRDLATAMLIASGNDATVALVEAA-GGRDAVLER 199
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK----GL 193
MN + +LG T + G+ G +TTA D+A++ + + + + G
Sbjct: 200 MNRLAASLGAHDTVAGDPTGLDAPGQHTTAHDLAVIGRAVLNNPTVRAYLTIPRAVLPGR 259
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ + N N +GT+ G G+K G+T A+G V +A++ ++LI +L T
Sbjct: 260 GDERFEIANHNTLLGTYEGTIGIKNGYTIAAGATFVGAAVRDGRTLIVSLL--RTAPTYA 317
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKD 279
+ +LL GF + D + + + +
Sbjct: 318 TDAKALLDWGFAHAADVRPLGRLAEP 343
>gi|148379813|ref|YP_001254354.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
ATCC 3502]
gi|148289297|emb|CAL83393.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
ATCC 3502]
gi|322806091|emb|CBZ03658.1| penicillin-binding protein DacC [Clostridium botulinum H04402 065]
Length = 378
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/317 (23%), Positives = 126/317 (39%), Gaps = 14/317 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ +D +TG V+ E + AS TK+MT V + L
Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I IS+NA + S ++KG + L L L+++S ND A+AIAE + + + F +
Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKIALRELLYGLMLRSGNDAAIAIAEGIAGSVEGFSKL 146
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARD----MAILSWRIKTDFPQYMHYFQIKGL 193
MN + +GL +HF+ HG+ + HY+TA D A + + +
Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ Y N N + ADG+KTG+T +G +V S+ +I V+L R
Sbjct: 207 NF-TRDYHNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCT---PRW 262
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE-EVCTTQKEIINYNTQMKE 312
+ + + N +K V I++ ++ K +Y+ ++ +
Sbjct: 263 NETTKIHNYVKNNYDFKKICTRGDILDQAVFEEGSVNIIADKDIIIPFKNGADYSIKINK 322
Query: 313 AKDKESHFIDFEKITLL 329
K+ E L
Sbjct: 323 PKELNWKVKKGEDFGSL 339
>gi|291527816|emb|CBK93402.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1]
Length = 465
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/326 (19%), Positives = 110/326 (33%), Gaps = 24/326 (7%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ P +++ NTG V+ E PAS+TK++T Y+ K + +
Sbjct: 24 TYWPEGPQINSPCAVVMEVNTGTVLYEKNSHEKHYPASITKILTTYLTILNCKMDEKVTF 83
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ + +++ + TM + + A A + L F+
Sbjct: 84 SKEAVKESSDGSSSIKRDVGEEMTMEQTLYGVMLESANECAYAAAEHTGKKLGGDYSTFI 143
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--------------F 181
MN +K LG + THF NA+G+ H+T+A DM ++S +
Sbjct: 144 DMMNKEAKELGCTDTHFNNANGLPDENHWTSAYDMGLISCAAYRNDEFRKITGTKTYIIP 203
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P H +P +++ G KTG+T + +V A + +L A
Sbjct: 204 PTNKHTEDTPLYNHHAMLHPFKSYSQFVNHDCTGGKTGYTSVANSTLVTYAEKDGLTLCA 263
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKIN-------YIIKDFYQQNLSNEVPNISE 294
VI+ A + + +LL+ F N D N SE
Sbjct: 264 VIMNAQSPDQ-YADTNTLLNYYFSNFKALSIAENENSAATDNTPDLGVMNEHGMYAKGSE 322
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHF 320
+ + + A K +
Sbjct: 323 NYVVLPNNADFSSIKREAADMKSDNK 348
>gi|168180079|ref|ZP_02614743.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum NCTC 2916]
gi|226948683|ref|YP_002803774.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A2 str. Kyoto]
gi|182669152|gb|EDT81128.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum NCTC 2916]
gi|226843155|gb|ACO85821.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A2 str. Kyoto]
Length = 424
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 73/339 (21%), Positives = 136/339 (40%), Gaps = 15/339 (4%)
Query: 5 LVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
L+I + + SN+F + T +D TG +I D PAS TK +T
Sbjct: 11 LLIFILTLTSNVFAAGDSNTEPPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKYLT 70
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A ++ + + T S+ + G T+ +N + L++ S ND+A
Sbjct: 71 ALLLAENKGKNDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLFSGNDVAY 130
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
I ++L K F MN + L L THF+ +G+ HYTTA D++++S +
Sbjct: 131 MIGDALAGNNKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSVISRAALKNP 190
Query: 182 PQY----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
Y I + N+N +G G KTG+T A+G +V + +
Sbjct: 191 WVYQSSNKKESSIVTSKGTKMAIENSNKLLGK-DGCVAGKTGYTDAAGRCLVTLFNRDGR 249
Query: 238 SLIAVILGA---LDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPN 291
++ V++G+ + + ++ + K +K + + L P+
Sbjct: 250 KILGVVMGSVYDAKDSFVFQDMKKIIDWSYNVKPSTLYKKDSSLKTETVTYNPLKIIGPS 309
Query: 292 ISEEVCTTQKEIIN-YNTQMKEAKDKESHFIDFEKITLL 329
++ +V KE + Y ++ + + ++ ID L
Sbjct: 310 VTIDVPIILKEDVTYYKNEVNDKEANKTINIDNTSYAAL 348
>gi|331086847|ref|ZP_08335924.1| hypothetical protein HMPREF0987_02227 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410013|gb|EGG89448.1| hypothetical protein HMPREF0987_02227 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 557
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 67/333 (20%), Positives = 132/333 (39%), Gaps = 24/333 (7%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN ++D N+G ++ D PAS+TK+MTA V +
Sbjct: 114 SNALKNWPEGPGIFAEAGIIMDMNSGAILYAKNIDEKEFPASITKIMTALVALENSE--- 170
Query: 74 AMLTTPITISKN---ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
LT + ++ EY ++ + G +T+++AL +++ SAN+++ AIA+++
Sbjct: 171 --LTDKVHFTEESVAFLEYGDASIGMQPGEEITMEDALYGMLLASANEVSYAIADTVGNG 228
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
F++ MN ++ LG + THF N HG+ HY +ARDMA+++ ++
Sbjct: 229 YDNFIRMMNEKAEELGCTNTHFTNPHGLHDEEHYVSARDMALIAS-AAFQHEEFRKITNT 287
Query: 191 KGLEIKGKKYPNTNWAVG------------TFLGADGMKTGFTCASGFNIVASAIQGDQS 238
I N + G KTG+T + +V+ G+
Sbjct: 288 YEHRIPPTNLVNEERVFQQYHQMLYDGTDTFYEPCVGGKTGYTDQALSTLVSYLDNGELQ 347
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC- 297
L++V L + + ++ F N + ++ + + + V
Sbjct: 348 LVSVNLKTHGVHV-YPDTKNMAEYVFNNFKKIPLEGKDLPKGVKETEEDAYIVVPKNVEF 406
Query: 298 -TTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ EI+ + K K ++ D + + +
Sbjct: 407 QDVKAEIVPEDKSGKSKKGTLTYTYDGQTVGVS 439
>gi|225570111|ref|ZP_03779136.1| hypothetical protein CLOHYLEM_06207 [Clostridium hylemonae DSM
15053]
gi|225161581|gb|EEG74200.1| hypothetical protein CLOHYLEM_06207 [Clostridium hylemonae DSM
15053]
Length = 454
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 64/312 (20%), Positives = 112/312 (35%), Gaps = 22/312 (7%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+++ TG ++ D PAS+TK++TA V + T
Sbjct: 64 PKGPATYGEAGIVMEVGTGAILYAKNIDEHEFPASITKVLTALVALENGQ--LTDEVTFT 121
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV----AIAESLCKTEKKFVQ 136
S + S+ K+G ++LD AL ++ SAN+ A ++ + F++
Sbjct: 122 HDSVAFLQPGDSSIGMKEGDVISLDEALHATLLASANEAAYAVGESVGRNAGHDYNWFLE 181
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM-----AILSWRIKTDFPQYMHYFQIK 191
MN K LG +HF N +G+ HYT ARDM + D Q ++Y
Sbjct: 182 QMNARCKELGGENSHFANTNGLHDENHYTCARDMALIGRELFKHPEFFDIVQTLNYAIPA 241
Query: 192 GLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ + + + A G KTG+T + ++ A + L+ V+L
Sbjct: 242 TDTCEEHIFQQKHKMLIPGNSNYYEYAVGGKTGYTSDALSTLITMAEKDGVRLVCVVLRT 301
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
N + +LL GF N + + + + E I +
Sbjct: 302 HGSNI-YSDTKNLLDYGFSNFKKTAASGEEDS-----KDVDSIIDSDGDGYVMLPEGIKF 355
Query: 307 NTQMKEAKDKES 318
+ K E+
Sbjct: 356 KDLDMKLKADEN 367
>gi|168184525|ref|ZP_02619189.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
gi|237795257|ref|YP_002862809.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
botulinum Ba4 str. 657]
gi|182672383|gb|EDT84344.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum Bf]
gi|229261495|gb|ACQ52528.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium
botulinum Ba4 str. 657]
Length = 378
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 74/317 (23%), Positives = 127/317 (40%), Gaps = 14/317 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ +D +TG V+ E + AS TK+MT V + L
Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I IS+NA + S ++KG +TL L L+++S ND A+AIAE + + + F +
Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSIEGFSKL 146
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARD----MAILSWRIKTDFPQYMHYFQIKGL 193
MN + +GL +HF+ HG+ + HY+TA D A + + +
Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ Y N N + ADG+KTG+T +G +V S+ +I V+L R
Sbjct: 207 NF-TRDYQNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCT---PRW 262
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE-EVCTTQKEIINYNTQMKE 312
+ + + N +K V I++ ++ K +Y+ ++ +
Sbjct: 263 NETTKIHNYVKNNYDFKKICAKGDILDQAVFEEGSVNIIADKDIIIPFKNGADYSIKINK 322
Query: 313 AKDKESHFIDFEKITLL 329
K+ E L
Sbjct: 323 PKELNWKVKKGEDFGSL 339
>gi|47570508|ref|ZP_00241136.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
gi|47552816|gb|EAL11239.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
Length = 423
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K Q +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|228961651|ref|ZP_04123259.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228798001|gb|EEM45006.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 423
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 78/332 (23%), Positives = 126/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S L+ GF N +K K N I +++ P V + Y
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKDPY 342
Query: 307 NTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K +K T + + +
Sbjct: 343 KIGTELDKSLSEDGHLVAPIKKDTKVGSITLE 374
>gi|196045526|ref|ZP_03112757.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
03BB108]
gi|225867373|ref|YP_002752751.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
03BB102]
gi|196023733|gb|EDX62409.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
03BB108]
gi|225787013|gb|ACO27230.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
03BB102]
Length = 423
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K Q +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPIKKNVKVGSITLE 374
>gi|148379380|ref|YP_001253921.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A str. ATCC 3502]
gi|153934047|ref|YP_001383756.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A str. ATCC 19397]
gi|153936557|ref|YP_001387306.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A str. Hall]
gi|148288864|emb|CAL82948.1| putative D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
A str. ATCC 3502]
gi|152930091|gb|ABS35591.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A str. ATCC 19397]
gi|152932471|gb|ABS37970.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A str. Hall]
Length = 424
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 72/339 (21%), Positives = 136/339 (40%), Gaps = 15/339 (4%)
Query: 5 LVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
L+I + + SN+F + T +D TG +I D PAS TK +T
Sbjct: 11 LLIFILTLTSNVFAAGDSNTEPPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKYLT 70
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A ++ + + T S+ + G T+ +N + L++ S ND+A
Sbjct: 71 ALLLAENKGKNDNIPYTATAKSQPQYSLNINLHPINIGETIKAENVMDGLLLFSGNDVAY 130
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
I ++L K F M+ + L L THF+ +G+ HYTTA D++++S +
Sbjct: 131 MIGDALAGNNKNFENMMSKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSVISRAALKNP 190
Query: 182 PQY----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
Y I + N+N +G G KTG+T A+G +V + +
Sbjct: 191 WVYQSSNKKESSIVTSKGTKMAIENSNKLLGK-DGCVAGKTGYTDAAGRCLVTLFNRDGR 249
Query: 238 SLIAVILGA---LDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPN 291
++ V++G+ + + ++ + K +K + + L P+
Sbjct: 250 KILGVVMGSVYDAKDSFVFQDMKKIIDWSYNVKPSTLYKKDSSLKTETVTYNPLKIIGPS 309
Query: 292 ISEEVCTTQKEIIN-YNTQMKEAKDKESHFIDFEKITLL 329
++ +V KE + Y ++ + + ++ ID L
Sbjct: 310 VTIDVPIILKEDVTYYKNEVNDKEANKTINIDNTSYAAL 348
>gi|229105975|ref|ZP_04236597.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
gi|228677459|gb|EEL31714.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
Length = 423
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 128/332 (38%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N+ +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANDHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS I T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKIIITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + N NW + G+DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PRPIRMENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S +L+ GF + +K + +E+ K+
Sbjct: 283 ERFTESRALIEYGFNSFEKQKLKIDKNNTISVVKGKADQVTVAPEKEITVIAKKGDKSPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K T + + + +
Sbjct: 343 KISTEADKSLAEDGHLIAPIKKDTKVGSIVLE 374
>gi|210621813|ref|ZP_03292842.1| hypothetical protein CLOHIR_00787 [Clostridium hiranonis DSM 13275]
gi|210154577|gb|EEA85583.1| hypothetical protein CLOHIR_00787 [Clostridium hiranonis DSM 13275]
Length = 420
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 82/359 (22%), Positives = 149/359 (41%), Gaps = 34/359 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
+++ I+ + + L+D TG VI PD A
Sbjct: 5 LKKLTAIMLAVLFVIPATGYAAEAKKKPVVEIYSKNSILVDQKTGRVITSKEPDKQVPLA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S++K+MT YV +K + +TI K + S K+G + + LK L++
Sbjct: 65 SISKVMTFYVAQDAIKNGEVKKDDLVTIDKKMLKVSGSTMHLKEGEKVKFNELLKGLMIV 124
Query: 115 SANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----------GH 163
SAND AVAIA +CK FV MN +K LG+ T+F+N +G+ + +
Sbjct: 125 SANDGAVAIASHVCKGDVDAFVDRMNAKAKELGMKNTYFINPNGLPIYDWTKKDGDPKQN 184
Query: 164 YTTARDMAILSWRIKTDFPQYM---HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
++TARD+A ++ + D+ + ++ + Y NTN + DG+KTG+
Sbjct: 185 HSTARDIATMTKNLLDDYEEETIAITDCKLDHAPSRDCNYYNTNPLLHMHSNVDGLKTGY 244
Query: 221 TCASGFNIVASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
T +G+ +V + D +I V++G + R + + +L ++G N +
Sbjct: 245 TDLAGYCLVFTDKMNSDGKSDMDNRMIGVVMGNWCKEDRVRSANALYNLG-ENFETKLMC 303
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + NIS+ + + +K +D + + + KI N+
Sbjct: 304 KKGETVA-----TGNIDNISDLDNIDLQPKRDCYGVVKNNEDI-TEKVRYVKIDATPNE 356
>gi|196041013|ref|ZP_03108310.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
NVH0597-99]
gi|196028181|gb|EDX66791.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
NVH0597-99]
Length = 423
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K Q +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|295109007|emb|CBL22960.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
Length = 415
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 69/249 (27%), Positives = 105/249 (42%), Gaps = 12/249 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ +TG V+ + AS TK+MT + L +T SK
Sbjct: 171 NLSSDCALLINADTGKVLYSKNENLRHANASTTKIMTCILALENS-----SLNDKVTFSK 225
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ PS K G T + + L L+V S ND A+AIAE + + F Q MN ++
Sbjct: 226 KAASVEPSKLYAKAGETFYMRDLLYSLMVPSHNDTAIAIAEHISGSTSAFAQLMNKKARE 285
Query: 145 LGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYMHYFQIKG-----LEIKGK 198
LG + THF+ +G+ HYTTA D+AI++ + +
Sbjct: 286 LGCTNTHFVTPNGLDAGLNHYTTASDLAIIARYAIQNPTFQKLINTKSYSFKSLNTKRYF 345
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILGALDRNTRNKVSA 257
TN +GT G G+KTG T +G+ V + + I+V LG R + S
Sbjct: 346 TVATTNALLGTQTGVVGLKTGVTNKAGYCFVGLCRSRKGNTYISVTLGGPTSAARWRDSK 405
Query: 258 SLLSMGFYN 266
LL+ +
Sbjct: 406 ILLTYAYKK 414
>gi|229158950|ref|ZP_04287007.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
gi|228624561|gb|EEK81331.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
Length = 423
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 124/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+ ++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKSRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K Q +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|227509080|ref|ZP_03939129.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227191467|gb|EEI71534.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 421
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 64/344 (18%), Positives = 124/344 (36%), Gaps = 34/344 (9%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ +D +TG ++ E P AS++KLMT Y+V ++E K
Sbjct: 27 AATVSTSQPVIYAKSAIAVDADTGQILYEKNAHQPLAIASISKLMTVYIVRKQIQEGKLS 86
Query: 76 LTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ IS ++ ++ + + + +K ++ SAN A+A+ + +
Sbjct: 87 WNDQVKISPAVAKLSTASGLTNVPLKSGKSYKVRDLVKAALIVSANAAAIALGQKVSGNA 146
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMAILSWRI 177
+ F M T++ LG+ F NA G+ + +A+D+A+L+ R+
Sbjct: 147 QNFADKMTKTARGLGIKDAKFYNAAGLTNKLTGSLMLKKDSPNAENLMSAKDIALLASRL 206
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASA 232
+ FP + G Y N + +G+KTG + +G SA
Sbjct: 207 EESFPGLTKITGQTQMTFAGNSYAGHNQLLDDRQIAKGAVVNGLKTGTSDEAGACFAGSA 266
Query: 233 IQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINY------IIKDFYQ 282
+ ++ V+LGA R +A L+ + F+ + K +
Sbjct: 267 TYHGRRIVTVVLGARNNSATDPARFIQTAKLMGIVFHKQHPVKLAKHVHISGLGTTKVPD 326
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQM-KEAKDKESHFIDFEK 325
L+ + + I+ N K K + +K
Sbjct: 327 GKLTKTKLVTKKTTWVWVPKSISQNQVKGKFVKTPKKINAPVKK 370
>gi|160892713|ref|ZP_02073503.1| hypothetical protein CLOL250_00243 [Clostridium sp. L2-50]
gi|156865754|gb|EDO59185.1| hypothetical protein CLOL250_00243 [Clostridium sp. L2-50]
Length = 451
Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats.
Identities = 68/294 (23%), Positives = 120/294 (40%), Gaps = 28/294 (9%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
LLD G V+ + + AS TK++T + + + +S
Sbjct: 82 DLHALSAILLDGKNGRVLYDKAGEEVRANASTTKILTCILALEY-----GDPDDIVIVSS 136
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A++ P ++G L + L L+++S ND AVAIAE + + + F MN +
Sbjct: 137 YAAKMPDVQLNIREGEEYRLKDLLYSLMLESHNDSAVAIAEYIGGSVEAFADLMNRKAIE 196
Query: 145 LGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----- 195
+G + THF+ +G+ H TTA D+A + + P+ + I
Sbjct: 197 VGCTNTHFITPNGLDAKDEYGIHGTTAEDLARIMRYCIRESPKREQFLAITRTATYSFTN 256
Query: 196 ----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ N N + GA KTGFT ++G+ V + + + LI +LG
Sbjct: 257 VGGTRSFSCSNHNAFLNMMDGALTGKTGFTGSAGYCYVGALERDGKILIVALLGCGWPGN 316
Query: 252 R---NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
+ + L++ G N + + I++ N++P +S+ V T KE
Sbjct: 317 KTYKWADTKKLMNYGLANYQEHVITDDILQ-------KNKIPVLSDSVYGTIKE 363
>gi|301056857|ref|YP_003795068.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
gi|300379026|gb|ADK07930.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
anthracis str. CI]
Length = 423
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K Q +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKNPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|218906570|ref|YP_002454404.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
AH820]
gi|300117906|ref|ZP_07055673.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1]
gi|218534840|gb|ACK87238.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
AH820]
gi|298724770|gb|EFI65445.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus SJ1]
Length = 423
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K Q +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKNPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|206973720|ref|ZP_03234638.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
H3081.97]
gi|217960011|ref|YP_002338567.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH187]
gi|222096095|ref|YP_002530152.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
gi|229139202|ref|ZP_04267777.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
gi|206747876|gb|EDZ59265.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
H3081.97]
gi|217064880|gb|ACJ79130.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH187]
gi|221240153|gb|ACM12863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
gi|228644261|gb|EEL00518.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
Length = 338
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/281 (26%), Positives = 130/281 (46%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ +++ + F + L+D ++G V+ + P A+L
Sbjct: 4 LKKFTILLLSFVITALIVLYFYLYVNGPIIQAKSAILIDAHSGEVVYTKNEETPIQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+ L E L + IS S T+ + L L++
Sbjct: 64 SKLMTEYITLEQLNEGTIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHTLLLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATHFMNAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E KF Q MN +K+L ++ F+NA G+ + TTA ++A
Sbjct: 124 NRSALALAEHIAGNEDKFTQLMNEKAKHLKLSQSSPFLNATGMNNDTNKLSTTTAIEVAK 183
Query: 173 LSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCAS 224
L+ ++ TDFP ++ ++ K K NTN + G DG++T F+
Sbjct: 184 LATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A +GD LI+VIL A + N+ + LL GF
Sbjct: 244 NYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFD 284
>gi|170760715|ref|YP_001786794.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A3 str. Loch Maree]
gi|169407704|gb|ACA56115.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum A3 str. Loch Maree]
Length = 422
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 70/332 (21%), Positives = 134/332 (40%), Gaps = 15/332 (4%)
Query: 5 LVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
L+I + + SN+F + +D TG +I D PAS TK +T
Sbjct: 11 LLIFILTLTSNVFAAGDSNTEPPAIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKYLT 70
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A ++ + + T S+ + G T+ +N + L++ S ND+A
Sbjct: 71 ALLLAENKGKNDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLFSGNDVAY 130
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
I ++L K F MN + L L THF+ +G+ HYTTA D++++S +
Sbjct: 131 MIGDALAGNNKNFENMMNKKIQELDLKNTHFVTPNGLHNPNHYTTAYDLSVISRAALKNP 190
Query: 182 PQY----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
Y I + N+N +G G KTG+T A+G +V + +
Sbjct: 191 WVYQSSNKKESSIVTSKGTKMTIENSNKLLGK-DGCVAGKTGYTDAAGRCLVTLFNRDGR 249
Query: 238 SLIAVILGA---LDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPN 291
++ +++G+ + + ++ + K +K + + L P+
Sbjct: 250 KILGIVMGSVYDAKDSFVFEDMKKIIDWSYNAKPSTLYKKDSSLKTETVTYNPLKIIGPS 309
Query: 292 ISEEVCTTQKEIIN-YNTQMKEAKDKESHFID 322
++ +V KE + Y ++ + + ++ ID
Sbjct: 310 VTIDVPIILKEDVTYYKNEVNDKEANKTINID 341
>gi|191637034|ref|YP_001986200.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus casei BL23]
gi|190711336|emb|CAQ65342.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus casei BL23]
gi|327381061|gb|AEA52537.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei LC2W]
gi|327384236|gb|AEA55710.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei BD-II]
Length = 436
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 60/384 (15%), Positives = 130/384 (33%), Gaps = 55/384 (14%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPD 48
M++ + ++A+ M+ P +S++ ++ TG ++
Sbjct: 1 MKKLMRGLIAAVVAVLMIGGAAPAMSVSAAESSDTNLVDAKAAVAIEPTTGKILYAKNAS 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTP----ITISKNASEYPPSNSTFKKGSTMTL 104
AS+TK+++ +V +K K I + + SN ++ + ++
Sbjct: 61 SVLPIASMTKMLSIELVLDAIKSGKINWDDKVTLNNAIWELSQNRDLSNVPLRRDGSYSV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------ 158
++ SAN + +AE + +++KFV M + G++ +N G+
Sbjct: 121 RELYDASLIYSANAAMMLLAEKVAGSQEKFVSQMTAKLNSWGITDAKIVNVTGLNNSQLK 180
Query: 159 --------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW 205
+ +A+DMA ++ + D P+ + I + N NW
Sbjct: 181 DAKVPGTDDNAENEMSAKDMAQVAQHLLKDHPEVLKTTSIAKQTFRKGTSDAIDMENWNW 240
Query: 206 A------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSA 257
L DG+KTG + A+G + + +I VIL A + R +
Sbjct: 241 MLKGLVSYDKDLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVILHANGDAKTRRFDQTK 300
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSN------------EVPNISEEVCTTQKEIIN 305
L++ N ++ ++ + K+ +
Sbjct: 301 KLMTNVLENWKTMTLAEAGQGIKGYDSVKVNRGQSRTTPIAPSTKAVAVVPSNSSKQSLQ 360
Query: 306 YNTQMKEAKDKESHFIDFEKITLL 329
Y + K + +K T +
Sbjct: 361 YTYTPAKGVKKNTVEAPVKKGTTI 384
>gi|307243482|ref|ZP_07525633.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
stomatis DSM 17678]
gi|306493126|gb|EFM65128.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
stomatis DSM 17678]
Length = 655
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 81/351 (23%), Positives = 129/351 (36%), Gaps = 32/351 (9%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++A A L + S +T K Y L+D N+G V+ + PAS TK+ TA+ V
Sbjct: 17 LLAPASLISHADQTSDLDTLKSKYMVLMDYNSGQVLYKKNATQKMYPASTTKIWTAFCVL 76
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
K L + I S + LLI S + V
Sbjct: 77 KKAK----NLDELVEIKDIPQIEGSSMYLENGEKFTVRELLESLLIHSSNDVAYVLAKHF 132
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ F+ +MN +K G S THF N HG+ HYTTA DMAILS D
Sbjct: 133 GGGNPQDFINYMNEEAKKFGASNTHFNNPHGLPDTDHYTTAMDMAILSRVAYGDPTIS-E 191
Query: 187 YFQIKGLEIK-------GKKYPNTNWA--------------VGTFLGADGMKTGFTCASG 225
++K + K + N+N + DG+KTGFT +G
Sbjct: 192 IVKMKSVSFKASDRIKVERNLVNSNKFLTSSDTIDHKGKTIPIKYDIVDGIKTGFTDDAG 251
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN----YIIKDFY 281
+V++A +G+ L+A + A + S +L+ G N K
Sbjct: 252 NCLVSTAKKGNVRLMANVFFAPGG-SLYHDSRTLIDYGLDNYKSITIYKADDIKGEKSVK 310
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK-DKESHFIDFEKITLLKN 331
++ + T + + NT+ K + + + +K ++
Sbjct: 311 FARPGKIKYKLANDYSITAMKTDSSNTKGYTYKYNFDKLEMPVKKGDIIGT 361
>gi|326792977|ref|YP_004310798.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
DSM 5427]
gi|326543741|gb|ADZ85600.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
DSM 5427]
Length = 432
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 75/344 (21%), Positives = 121/344 (35%), Gaps = 17/344 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + ++ + I P T + L++ T ++ E + PAS+TKL+
Sbjct: 1 MKKSVYVLTFLFILCISPSFLAKPTVEARGAILIEAKTNTILYEKNAYSKFYPASITKLL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T ++ L E + T S N S K G + N L L++ S N IA
Sbjct: 61 TTLIIEEQLSENHII--TKSQNSVNTIPKDSSEIGLKIGDSYNKVNGLYGLLLGSDNFIA 118
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A + + F + MN +K LG THF N HG HYTT DMA ++ +
Sbjct: 119 HDLALAHSGSISNFAELMNTRAKALGAKNTHFTNPHGYHDPNHYTTPYDMAQIAKGAFDN 178
Query: 181 FPQYM-----HYFQIKGLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNIVA 230
+ + K NT+ KTG+ +G +VA
Sbjct: 179 PTVQKIAGTAQFNFYVNNKNKYIPIKNTSRLLKSETPYYNPAVVACKTGYHSDAGQTLVA 238
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
A+ GD LIA ++ N L + + +N +
Sbjct: 239 KAVYGDMELIAAVMYEKTPNQ-YIDVNKLFDYA----KTYYGVEQKSDIYTLKNKTITPW 293
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ +K N T + E +K+ N IT
Sbjct: 294 SEPSITRAVEKGWANNATNYNDTIYTEDLVAMLKKVGASYNGIT 337
>gi|167898320|ref|ZP_02485721.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 7894]
Length = 276
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 7/239 (2%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ + ++ A + ++D ++G + + D PASLTK
Sbjct: 27 RLFAALFVSAACAAPNGARAAPAPAPAIQAASWLVVDADSGKTLGAHNVDARREPASLTK 86
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKS 115
LMTAYV F L+ +T++ + G + + + ++ LIV S
Sbjct: 87 LMTAYVAFDALERDALRWDDTVTVAADDIASVGRDEARMYLTPGQRVRVRDLMRGLIVAS 146
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
AND A+ +A+ + + F MN+T++ LG+ +HF++ G+ HY+TA D++IL+
Sbjct: 147 ANDAALVLAKRIGGSPAGFATMMNDTARRLGMRDSHFVSPSGITTPDHYSTAHDLSILAQ 206
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
R+ DFP + + + N N +G DGMKTG T A+G+ +V +A +
Sbjct: 207 RLNRDFPAFYTFSSQRHFAYGAFAKTNKNRLLGADPSVDGMKTGHTNAAGWCMVVTAKR 265
>gi|229051059|ref|ZP_04194606.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
gi|228722270|gb|EEL73668.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
Length = 434
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 124/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 54 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 113
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N +K LGL F+
Sbjct: 114 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 173
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 174 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 233
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 234 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 293
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 294 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVTPEKEITVIAKKGSKEPY 353
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K T + + +
Sbjct: 354 KIGTELDKSLSEDGHLVAPIKKDTKVGSITLE 385
>gi|206891061|ref|YP_002249135.1| D-alanyl-D-alanine carboxypeptidase [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742999|gb|ACI22056.1| D-alanyl-D-alanine carboxypeptidase [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 342
Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats.
Identities = 65/270 (24%), Positives = 106/270 (39%), Gaps = 14/270 (5%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAE-----TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+F+ I + P E P +D TG V+ P PAS T
Sbjct: 17 RFMCFILFIYVLVYSPEALAQETKKQVDIDAPSAVAVDAQTGKVLYGKNPHIKLPPASTT 76
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KL+T V +TIS+ A+ P + +G + + + L +++S N
Sbjct: 77 KLVTVMVALEK-----LDPEHKVTISRKAARTPSVSPKLVEGEVYKVRDLVYLALMRSVN 131
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR- 176
AVA+AE+ E+ FV+ MN+ + +G T F+NA G+ G YTT D+ +
Sbjct: 132 SAAVALAEATAGREENFVKLMNDKVQKIGAKDTRFINASGLPGAGQYTTVYDLTKIMSHA 191
Query: 177 ---IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + I+ K NTN + G KTG+T + V++
Sbjct: 192 LAYPLIKEAVHTRVYLIRSENGKEHFIQNTNQLLWAEDNMIGGKTGYTRRARHCFVSAYK 251
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMG 263
+ + ILG +R K + L+
Sbjct: 252 VNGRLVYTAILGDTNREQLWKDTQQLVEKA 281
>gi|30265411|ref|NP_847788.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus anthracis
str. Ames]
gi|47530965|ref|YP_022314.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str. 'Ames
Ancestor']
gi|49188225|ref|YP_031478.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis str.
Sterne]
gi|165871278|ref|ZP_02215927.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0488]
gi|167635722|ref|ZP_02394032.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0442]
gi|170688221|ref|ZP_02879432.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0465]
gi|170708041|ref|ZP_02898489.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0389]
gi|190568901|ref|ZP_03021803.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
Tsiankovskii-I]
gi|227818157|ref|YP_002818166.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. CDC 684]
gi|229601349|ref|YP_002869603.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0248]
gi|254687169|ref|ZP_05151027.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. CNEVA-9066]
gi|254724048|ref|ZP_05185833.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A1055]
gi|254742225|ref|ZP_05199912.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. Kruger B]
gi|254755864|ref|ZP_05207896.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. Vollum]
gi|254761576|ref|ZP_05213596.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. Australia 94]
gi|30260089|gb|AAP29274.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. Ames]
gi|47506113|gb|AAT34789.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. 'Ames Ancestor']
gi|49182152|gb|AAT57528.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus anthracis
str. Sterne]
gi|164712945|gb|EDR18473.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0488]
gi|167528831|gb|EDR91588.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0442]
gi|170127014|gb|EDS95893.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0389]
gi|170667914|gb|EDT18666.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0465]
gi|190559968|gb|EDV13951.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
Tsiankovskii-I]
gi|227006453|gb|ACP16196.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. CDC 684]
gi|229265757|gb|ACQ47394.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0248]
Length = 423
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 76/332 (22%), Positives = 125/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNTDLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S L+ GF N +K K N + +++ P V + Y
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVAQGKEDQVTVAPEKEITVIAKKGSKNPY 342
Query: 307 NTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|312140773|ref|YP_004008109.1| d-alanyl-d-alanine carboxypeptidase [Rhodococcus equi 103S]
gi|311890112|emb|CBH49430.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus equi
103S]
Length = 444
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 61/337 (18%), Positives = 107/337 (31%), Gaps = 29/337 (8%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + L D +TG V+A P + PAS K++ A V
Sbjct: 106 VVTAPGTPPLPAEISATGWVLSDLDTGQVLAAKDPHGRYRPASTIKVLLALVALDE---- 161
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L T I S A+ S+ G T + ++ L+++S ND A A+A+ E+
Sbjct: 162 -LDLDTTIVASPEAASMEGSSVGLGAGGTYSNLQLMQGLVMRSGNDAAQALAQ-QLGGEQ 219
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP---------- 182
V MN + +LG S T + G+ G T+ D+A+ +
Sbjct: 220 ATVAKMNAKAASLGASDTRTASVSGLDGPGMSTSPYDLALFFRAAMQNPTFAGLITTDTV 279
Query: 183 ----QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + N N + + GA G KTG+T + V A + +
Sbjct: 280 MFPGHPADPTKPDDKPVDPYPIFNDNQLLANYPGALGGKTGYTDDARQTFVGGAERDGRR 339
Query: 239 LIAVILGALDRNTR-NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
L ++ A R + LL G+ + +V
Sbjct: 340 LAVTLMAADVLPIRPWEQVGRLLDYGWA--------LDPAVSVGVLVDPKGADEPAVQVA 391
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + I ++ + I
Sbjct: 392 GPETHGPGGMDLASGSDLPNKEVAGRVAIGIVGSGIV 428
>gi|167640402|ref|ZP_02398666.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0193]
gi|177651865|ref|ZP_02934448.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0174]
gi|254735510|ref|ZP_05193217.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. Western North America USA6153]
gi|167511622|gb|EDR87004.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0193]
gi|172082569|gb|EDT67633.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A0174]
Length = 423
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 73/332 (21%), Positives = 121/332 (36%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNTDLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
R S L+ GF N +K + ++ E T
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVAQGREDQVTVAPEKEITVIAKKGSKNPY 342
Query: 311 KEAKDKES-------HFIDFEKITLLKNKITK 335
K + + +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|229153550|ref|ZP_04281728.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
gi|228630154|gb|EEK86805.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
Length = 434
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 124/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 54 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 113
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N +K LGL F+
Sbjct: 114 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 173
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 174 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 233
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 234 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 293
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 294 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 353
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K T + + +
Sbjct: 354 KIGTELDKSLSEDGHLVAPIKKDTKVGSITLE 385
>gi|49481295|ref|YP_039380.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala
carboxypeptidase) [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|228930397|ref|ZP_04093398.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228949115|ref|ZP_04111385.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|49332851|gb|AAT63497.1| D-alanyl-D-alanine carboxypeptidase (serine-type D-Ala-D-Ala
carboxypeptidase) [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|228810556|gb|EEM56907.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228829244|gb|EEM74880.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 423
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 76/332 (22%), Positives = 125/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S L+ GF N +K K N + +++ P V + Y
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVAQGKEDQVTVAPEKEITVIAKKGSKNPY 342
Query: 307 NTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|260437596|ref|ZP_05791412.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
DSM 2876]
gi|292809949|gb|EFF69154.1| serine-type D-Ala-D-Ala carboxypeptidase [Butyrivibrio crossotus
DSM 2876]
Length = 443
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 62/288 (21%), Positives = 112/288 (38%), Gaps = 24/288 (8%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIA---------ETNKLPYYTLLDTNTGHVIAENYPDHP 50
M++ + + + A K Y L+D ++G V+ + D
Sbjct: 1 MKKIIASTLTFIYIMCHLSLCRAADNNDILPEFPDIKSQYIVLMDADSGEVLYQRNMDKK 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PAS TK+MTA + + + + ++ +N G +T++ +L
Sbjct: 61 CYPASTTKMMTALLTIENTSMSDVVTYSKAAV--DSVSPGDANVGIAVGEQLTVEQSLYC 118
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
L+++SAND+A +AE + T F MN+ + LG +THF N G+ HY+T DM
Sbjct: 119 LMLRSANDVAYGLAEYVGGTASGFASMMNDKAAALGAVSTHFSNPSGLTNEFHYSTPYDM 178
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-----------GTFLGADGMKTG 219
A++ + +I N + + G KTG
Sbjct: 179 ALIGRACFNNKTLVNIMSYTGVYKIGKTNTNNNIRYYTHRFQMLKGGEYEYRYSKGGKTG 238
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
+T A+G +V+ A + L+ ++ + + R S +L N
Sbjct: 239 YTDAAGNCLVSFAEKDGIRLVCSVMNS-TASGRYTDSIALFDYYLNNY 285
>gi|153811609|ref|ZP_01964277.1| hypothetical protein RUMOBE_02001 [Ruminococcus obeum ATCC 29174]
gi|149832350|gb|EDM87435.1| hypothetical protein RUMOBE_02001 [Ruminococcus obeum ATCC 29174]
Length = 414
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 68/272 (25%), Positives = 119/272 (43%), Gaps = 21/272 (7%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ L+D TG V+ D PAS+TK+MTA + +K +
Sbjct: 66 VKGPQIEGESAILVDMFTGAVLYSKNADKTQYPASITKIMTALL-----GCEKLNPSQKF 120
Query: 81 TIS----KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
++ ++ +E S+ T++ AL ++++SAN++ +A+AE + KKFV+
Sbjct: 121 AMTASAARSITETNSSSIYADTDEEFTIEQALMAVMLQSANEMTLAVAELTSGSTKKFVE 180
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP------QYMHYFQI 190
MN ++ LG + THF N +G+ HYTTA DMA ++ + +
Sbjct: 181 QMNLKARQLGCTNTHFNNPNGLPDEIHYTTASDMAKIARAAWFNPTFRKFASTQYYEIPP 240
Query: 191 KGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ + N + + + G G KTG+T A+G +V A + L++V+L
Sbjct: 241 TNKFAETRYLLNHHKMMKNQAYAYNGVLGGKTGYTEAAGNTLVTYAKNDNTYLVSVVL-- 298
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
N + +LL GF N + + K
Sbjct: 299 QSVNGAYSDTKALLDYGFNNFSRTAVKDLPSK 330
>gi|228942535|ref|ZP_04105070.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228982101|ref|ZP_04142393.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
gi|228777639|gb|EEM25914.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
gi|228817128|gb|EEM63218.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326943187|gb|AEA19083.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 423
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/332 (22%), Positives = 121/332 (36%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAES----LCKTEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + + L ++EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAESEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKVMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
R S L+ GF N +K + ++ E T
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKDPY 342
Query: 311 KEAKDKES-------HFIDFEKITLLKNKITK 335
K + + +K + + +
Sbjct: 343 KIGTELDKSLAEDGHLVAPVKKDAKVGSITLE 374
>gi|229112801|ref|ZP_04242333.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
gi|228670635|gb|EEL25947.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
Length = 434
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 124/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 54 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 113
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N +K LGL F+
Sbjct: 114 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 173
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 174 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 233
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 234 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 293
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 294 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 353
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K T + + +
Sbjct: 354 KIGTELDKSLSEDGHLVAPIKKDTKVGSITLE 385
>gi|319945575|ref|ZP_08019827.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
ATCC 700641]
gi|319748174|gb|EFW00416.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
ATCC 700641]
Length = 413
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 66/348 (18%), Positives = 137/348 (39%), Gaps = 30/348 (8%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
P + + +D TG ++ E D ++ L+T Y+V+ +++ K L
Sbjct: 19 SPVKAEDLDLGAQHAIAIDGTTGKILYEKNSDEKKEVGGISNLLTTYLVYEAIQQGKISL 78
Query: 77 TTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T + IS A + ++ + + + L L+V +AN A+A+AE + +E+K
Sbjct: 79 TDDVDISDKAYQLTAIEGISNVPMEARKYKVKDLLTALLVSNANSAAIALAEKVAGSEEK 138
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVV-------------QHGHYTTARDMAILSWRIKTD 180
FV M K G++ +NA G+ + + +A D+A+++ + D
Sbjct: 139 FVLLMKAKLKEWGITDATIVNASGLNQSIIDGDEENKKKNNENKLSAYDVAVIAKHLLED 198
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGD 236
+P+ + E G + ++N+ + G DG+KTG + G + VAS Q
Sbjct: 199 YPEVTKITSLSHAEFAGIQLESSNYMLENMPNYRAGVDGLKTGNSEKGGISFVASTNQNG 258
Query: 237 QSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIK------DFYQQNLS 286
+I V++G D R +A+L++ N ++ +
Sbjct: 259 IRMITVVIGVEAIDGDPYARFVTTANLMNYVSQNFVANLIVSKGETYNNSKSTVLDGKKT 318
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + ++ +++ ++ + S +K T L
Sbjct: 319 SVIAVAKDDFIVIERQGSQTEPKITFKSSQASFSAPLKKGTSLGILTY 366
>gi|228955638|ref|ZP_04117636.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228804007|gb|EEM50628.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 423
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 74/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGASFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 343 KIGTELDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|158317707|ref|YP_001510215.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. EAN1pec]
gi|158113112|gb|ABW15309.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. EAN1pec]
Length = 465
Score = 137 bits (343), Expect = 3e-30, Method: Composition-based stats.
Identities = 59/264 (22%), Positives = 110/264 (41%), Gaps = 12/264 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + + D +G ++A + P PAS K++TA V
Sbjct: 1 MPPPAGITAEAWLVADAGSGAILAAHNAHLPDLPASTMKMLTALTVLP-----GLPPDRE 55
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+TIS A++ + G T+ + +++ S ND VA+ E+ + + MN
Sbjct: 56 VTISDQAAQVDGTRVGLVPGVRYTVRDLATAMLIASGNDATVALVEAA-GGREAVLDRMN 114
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY----MHYFQIKGLEI 195
+ +LG S T + G+ G +TTA D+A++ D + + G
Sbjct: 115 RLAASLGASETVAGDPTGLDAPGQHTTAHDLAVIGRATLNDPIVRGYLTIPRASLPGRGD 174
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ + N N +G++ G G+K G+T A+G V +A + D++LI +L
Sbjct: 175 ERFEIANHNTLIGSYEGTIGIKNGYTVAAGATFVGAATRNDRTLIVSLL--RTAPAYGTD 232
Query: 256 SASLLSMGFYNKTDRKKINYIIKD 279
+ +LL GF + D + + +
Sbjct: 233 ARALLDWGFAHAADVRPVGRLAGP 256
>gi|111023206|ref|YP_706178.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1]
gi|110822736|gb|ABG98020.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1]
Length = 431
Score = 137 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 56/262 (21%), Positives = 93/262 (35%), Gaps = 21/262 (8%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ + + D +TG V+A P + PAS K++ A V S L
Sbjct: 97 APALPADIAASGWVVADIDTGDVLAAKDPHGRYRPASTIKMLLALVALSE-----LDLDK 151
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T + + S K T ++ L++ S ND A +A + V M
Sbjct: 152 TVTATAEDAAVEGSAVGIGKNGQYTNRQLMQGLVMASGNDAAHLLAR-QLGGDAATVDKM 210
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N+ + LG T G+ G ++ D+A++ +
Sbjct: 211 NHLADTLGAHDTRTATPSGLDGPGMSSSPFDLALIFHTAMKNPTFAELISTETVQFPGFP 270
Query: 199 K--------------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
K N N + + GA G KTGFT + V A + L+ ++
Sbjct: 271 KDPAIPDDQDRPPFALANDNQLLYNYDGALGGKTGFTDDARHTYVGGADHDGRRLMVTLM 330
Query: 245 GALDRNTR-NKVSASLLSMGFY 265
GA + R + +A LL GF
Sbjct: 331 GAEAQPIRPWEQAARLLDYGFA 352
>gi|229099816|ref|ZP_04230740.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
gi|228683562|gb|EEL37516.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
Length = 423
Score = 137 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 76/332 (22%), Positives = 128/332 (38%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N+ +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANDHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS I T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G+DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S +L+ GF + +K + +E+ K+
Sbjct: 283 ERFTESRALIEYGFNSFEKQKLKIDKNNTISVVKGKADQVTVAPEKEITVIAKKGDKSPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K T + + + +
Sbjct: 343 KISTEADKSLAEDGHLIAPIKKDTKVGSIVLE 374
>gi|294793071|ref|ZP_06758217.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 6_1_27]
gi|294456016|gb|EFG24380.1| serine-type D-Ala-D-Ala carboxypeptidase [Veillonella sp. 6_1_27]
Length = 300
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 70/258 (27%), Positives = 117/258 (45%), Gaps = 11/258 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
S + L+D +T ++ PD +PAS TK++T K
Sbjct: 44 ASVAQAAYITPPSTVGEAVVLIDADTKEILFAKNPDKWMHPASTTKMVTLLTALEL---K 100
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L TIS A+ SN + G +TL+ L+ ++V S ND A+ +AE++ +
Sbjct: 101 GTQLDELATISSYATSMEESNLGVRVGDQITLEGVLEGMMVASGNDAAIVVAENVSGSVD 160
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYF 188
KF + M + G + F+N HG+ Q GH++TARD+A++ Y+
Sbjct: 161 KFAKDMTRIAAKAGAKNSVFLNPHGLTQKGHHSTARDLAMIAAYGMKYQMFRDKVANDYY 220
Query: 189 QIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + TN + + GA+G+KTGFT A+G ++ASA + ++I V+L
Sbjct: 221 KVPYQNRAPETIRTTNHFIRNKYPGANGLKTGFTNAAGECLIASATRKGHTMIVVMLN-- 278
Query: 248 DRNTRNKVSASLLSMGFY 265
+ R + L GF
Sbjct: 279 -DDNRWDEAVQFLDYGFK 295
>gi|229193641|ref|ZP_04320584.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
gi|228589794|gb|EEK47670.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
Length = 423
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 74/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKTMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 343 KIGTELDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|226949097|ref|YP_002804188.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
botulinum A2 str. Kyoto]
gi|226843082|gb|ACO85748.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
botulinum A2 str. Kyoto]
Length = 378
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 74/317 (23%), Positives = 127/317 (40%), Gaps = 14/317 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ +D +TG V+ E + AS TK+MT V + L
Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I IS+NA + S ++KG +TL L L+++S ND A+AIAE + + + F +
Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSIEGFSKL 146
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARD----MAILSWRIKTDFPQYMHYFQIKGL 193
MN + +GL +HF+ HG+ + HY+TA D A + + +
Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ Y N N + ADG+KTG+T +G +V S+ +I V+L R
Sbjct: 207 NF-TRDYQNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCT---PRW 262
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE-EVCTTQKEIINYNTQMKE 312
+ + + N +K V I++ ++ K +Y+ ++ +
Sbjct: 263 NETTKIHNYVKNNYDFKKICTRGDILDQAVFEEGSVNIIADKDIIIPFKNGADYSIKINK 322
Query: 313 AKDKESHFIDFEKITLL 329
K+ E L
Sbjct: 323 PKELNWKVKKGEDFGSL 339
>gi|190576060|ref|YP_001973905.1| putative family S11 unassigned peptidase [Stenotrophomonas
maltophilia K279a]
gi|190013982|emb|CAQ47622.1| putative family S11 unassigned peptidase [Stenotrophomonas
maltophilia K279a]
Length = 264
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 79/255 (30%), Positives = 124/255 (48%), Gaps = 10/255 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S A LD T VI ++ D PASLTKLMTAY + ++E+
Sbjct: 2 PSPAPARAPLSSITLDAATFAVIHQHNADIARQPASLTKLMTAYAAYECVEERGRSWGDE 61
Query: 80 ITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+TI+ + G T+TL L+ L++ S ND A+AIA L ++ F++
Sbjct: 62 VTIAADDVHAVADDETRMGLVPGETVTLARLLEGLMIVSGNDAALAIARHLDGSQPAFLE 121
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN ++ LGL ++ F + G+ H ++ARDMA+L+ + D PQ + +
Sbjct: 122 RMNRHARQLGLRSSWFASVSGITTPHHASSARDMAVLAACLLNDHPQILAITAQRAFVHG 181
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG--DQ----SLIAVILGALDRN 250
N N +G G DG+KTG+T A+GF + A+A + + LI V+LG+ R+
Sbjct: 182 SFSRNNQNALLG-DDGVDGLKTGYTQAAGFCLAATACRAVPGRDQPVRLITVVLGSESRD 240
Query: 251 TRNKVSASLLSMGFY 265
R+ + L+ GF
Sbjct: 241 ARDALVRDQLAAGFA 255
>gi|315639990|ref|ZP_07895117.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus italicus DSM
15952]
gi|315484252|gb|EFU74721.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus italicus DSM
15952]
Length = 423
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 73/376 (19%), Positives = 143/376 (38%), Gaps = 41/376 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+R +L++ + + P + E +D++TG + E P + AS
Sbjct: 5 IRIYLLLFCVIGSCVLAPVVQAQEETPLAIQAKAAIAIDSDTGKIFYEQDATTPLHIAST 64
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLI 112
TKL++ Y+++ ++ K +T +TIS + SN +G + ++ N ++
Sbjct: 65 TKLLSMYIIYDQIRTGKLSMTDQVTISAETSALSQNWQLSNVLLYEGQSYSVKNLIEAGF 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ------------ 160
++SAN +A+AE + +E FV M G++ + + G+
Sbjct: 125 LESANAAVMALAEKVAGSEATFVDLMRAQLTTWGITDGTIVTSTGLNNAFLGDNRYPGSG 184
Query: 161 --HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNWAVGTF--- 210
+ +A+D+AI++ + DFP+ + L NTN +
Sbjct: 185 AEEENQLSAKDLAIVARHLLQDFPEVLQITSQSQLTFAEPTGENLELENTNQMLAGMAVA 244
Query: 211 -LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN--TRNKVSASLLSMGFYNK 267
G DG+KTG T +G V + +GD LI V+L D R SA ++ +
Sbjct: 245 TDGVDGLKTGTTDLAGACFVGTVKRGDTRLITVVLDVTDATGIARFTESARMMEWVYSQW 304
Query: 268 TDRKKINYIIKDFYQQNLS-------NEVPNISEEVCTTQKEIINYNTQMKEAK-DKESH 319
+ + +Q +S + EV K+ ++ K S
Sbjct: 305 QQQTINGETLTIPKRQTISVKDGEQLKVAVGLDNEVTVWVKKGMDATNITVTPTFTKTSV 364
Query: 320 FIDFEKITLLKNKITK 335
++ + + +
Sbjct: 365 TAPVKRGKQVGTAVIR 380
>gi|295110612|emb|CBL24565.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
Length = 417
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 63/271 (23%), Positives = 106/271 (39%), Gaps = 18/271 (6%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ +N +++ +T + D P + K+MT + +
Sbjct: 39 AISTNDIAGWPQGPDITSTAAVIMEDSTNTTLYAKNMDQVLYPGATVKVMTTLLALENTQ 98
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ T +S +N + + T++ L +++ SAND+A+ +AE + +
Sbjct: 99 LSDQVTMTATGVS--GVTDGGANISAQIDEVFTVEQCLYAIMLASANDVALQLAEHIGGS 156
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FVQ MN + LG + T F N G+ +TTA DMA++ +
Sbjct: 157 VDGFVQMMNARAPELGCTNTVFTNPTGLPDENQHTTAHDMALIMKAAADNESFQTIASTT 216
Query: 191 -------------KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ L NTN + G + G+T ASG +V SA +
Sbjct: 217 SYTIPATNVSGGDRVLTNNFSMLTNTNA--AYYQYCTGGREGYTEASGSTLVCSAQKNGI 274
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+LIAV+L T +ASLL+ GF N
Sbjct: 275 TLIAVVLQGTSGTT-ATEAASLLNYGFDNFN 304
>gi|228968521|ref|ZP_04129509.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228791227|gb|EEM38841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 423
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 74/332 (22%), Positives = 125/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
N+ G+ + +ARDM IL+ I T +P+ + + +
Sbjct: 163 NSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW ++ G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 283 ERFTESRELIEHGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K T + + +
Sbjct: 343 KIGTELDKSLAEDGHLVAPVKKDTKVGSITLE 374
>gi|218900516|ref|YP_002448927.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
G9842]
gi|218541526|gb|ACK93920.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
G9842]
Length = 423
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 74/332 (22%), Positives = 125/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
N+ G+ + +ARDM IL+ I T +P+ + + +
Sbjct: 163 NSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW ++ G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 283 ERFTESRELIEHGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K T + + +
Sbjct: 343 KIGTELDKSLAEDGHLVAPVKKDTKVGSITLE 374
>gi|116493792|ref|YP_805526.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei ATCC 334]
gi|227534583|ref|ZP_03964632.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239631047|ref|ZP_04674078.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|301065368|ref|YP_003787391.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei str.
Zhang]
gi|116103942|gb|ABJ69084.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
[Lactobacillus casei ATCC 334]
gi|227187832|gb|EEI67899.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239527330|gb|EEQ66331.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|300437775|gb|ADK17541.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus casei str.
Zhang]
Length = 436
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 60/384 (15%), Positives = 130/384 (33%), Gaps = 55/384 (14%)
Query: 1 MRQFL-----VIIAMAMLSNIFPFLSIAET-------NKLPYYTLLDTNTGHVIAENYPD 48
M++ + ++A+ M+ P +S++ ++ TG ++
Sbjct: 1 MKKLMRGLIAAVVAVLMIGGAAPAMSVSAAESSDTNLVDAKAAVAIEPTTGKILYAKNAS 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTP----ITISKNASEYPPSNSTFKKGSTMTL 104
AS+TK+++ +V +K K I + + SN ++ + ++
Sbjct: 61 SVLPIASMTKMLSIELVLDAIKSGKINWDDKVTLNNAIWELSQNRDLSNVPLRRDGSYSV 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------ 158
++ SAN + +AE + +++KFV M + G++ +N G+
Sbjct: 121 RELYDASLIYSANAAMMLLAEKVAGSQEKFVSQMTAKLNSWGITDAKIVNVTGLNNSQLK 180
Query: 159 --------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW 205
+ +A+DMA ++ + D P+ + I + N NW
Sbjct: 181 DAKVPGTDDNAENEMSAKDMAQVAQHLLKDHPEVLKTTSIAKQTFRKGTSDAIDMENWNW 240
Query: 206 A------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSA 257
L DG+KTG + A+G + + +I VIL A + R +
Sbjct: 241 MLKGLVSYDKNLPVDGLKTGTSDAAGDCFTGTVEKNGMRIITVILHANGDAKTRRFDQTK 300
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSN------------EVPNISEEVCTTQKEIIN 305
L++ N ++ ++ + K+ +
Sbjct: 301 KLMTNVLENWKTMTLAEAGQGIKGYDSVKVNRGQSRTTPIAPSTKAVAVVPSNSSKQSLQ 360
Query: 306 YNTQMKEAKDKESHFIDFEKITLL 329
Y + K + +K T +
Sbjct: 361 YTYTPAKGVKKNTVEAPVKKGTTI 384
>gi|296269600|ref|YP_003652232.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora
bispora DSM 43833]
gi|296092387|gb|ADG88339.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora
bispora DSM 43833]
Length = 307
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 9/247 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
LLD TG + ASLTK+MTAY+V K ++ P +
Sbjct: 55 PEVYARAAYLLDAATGEELYGKAGTERMPVASLTKVMTAYLVLRQAKLTDTVVIDPADV- 113
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ A+ + + + G +T+++ L L++ S D A A+A + F + MN+T++
Sbjct: 114 RYANAGGGTTAGLRAGDRLTVEDLLYALMLPSGADAAHALARVYGPGVEAFTKRMNDTAR 173
Query: 144 NLGLSATHFMNAHGVVQH--GHYTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIK 196
LGL+ T ++NA G+ + +TARD A L+ D + +
Sbjct: 174 ELGLTDTTYLNADGLPTPEGQNTSTARDQARLAEIALRDPRLKKITSTQVHTVARTADHA 233
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ NTN +G G G+KTGFT A+GF + +A + + ++ VILG R +
Sbjct: 234 AYTWRNTNRLLGA-PGVIGVKTGFTLAAGFCLAFAAERDGRLVVGVILGETVSARRYTTA 292
Query: 257 ASLLSMG 263
+LL
Sbjct: 293 RALLDWA 299
>gi|206970485|ref|ZP_03231438.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
AH1134]
gi|229072856|ref|ZP_04206055.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
gi|229082601|ref|ZP_04215064.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
gi|206735062|gb|EDZ52231.1| putative D-alanyl-D-alanine carboxypeptidase [Bacillus cereus
AH1134]
gi|228701033|gb|EEL53556.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
gi|228710347|gb|EEL62322.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
Length = 423
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 74/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 343 KIGTELDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|220927973|ref|YP_002504882.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulolyticum H10]
gi|219998301|gb|ACL74902.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulolyticum H10]
Length = 406
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 76/349 (21%), Positives = 138/349 (39%), Gaps = 23/349 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAET--NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ +V +A+ ++ N P + T L+DT G ++ E +P+ + KL
Sbjct: 4 KILIVFVALILIFNCLPVFAWTPTEGLTSSSVVLMDTVRGQILFEKNAYAHLSPSVMCKL 63
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTA V L +TISKNA+ + N D +++ + +
Sbjct: 64 MTALVTIEKTD-----LNAKVTISKNAASFKGLNLVVG-NQYTVEDLLYAVMLSQGNDAA 117
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+KFV++MN +K L L T+F+N G+ + YT+A+D+A+L +
Sbjct: 118 VALAEYVGDGDIQKFVRYMNTKAKELSLKDTYFVNPTGLYEKDQYTSAKDIAVLVKAAIS 177
Query: 180 DFPQYMHYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTG-FTCASGFNIVASAIQG 235
+ + + + G N N ++ G DG K G T + V +A
Sbjct: 178 NNTFNLMFGARGFGWLNGNNSSILTNQNTLFWSYKGVDGGKIGTNTNPQSISAVTTATLN 237
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE- 294
++ LIAV+ + N +A L GF + I + + +V +S+
Sbjct: 238 EKRLIAVVFNTNEENA-FSETAKLFDYGFSKFYTGVLVPKNIPQRSIEVDNVKVDLVSKI 296
Query: 295 EVCTTQKEIINY--------NTQMKEAKDKESHFIDFEKITLLKNKITK 335
+V T ++ N ++K + E+ K TL N + +
Sbjct: 297 DVYYTYPVGDSFINNISFTPNEKLKLPLNTETI-AGVLKYTLNDNTVIE 344
>gi|313114789|ref|ZP_07800289.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622844|gb|EFQ06299.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 451
Score = 136 bits (342), Expect = 4e-30, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 120/349 (34%), Gaps = 24/349 (6%)
Query: 1 MRQFLVIIAMAML----SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ + + +L + Y ++D +TG V+A+ + +PAS+
Sbjct: 6 MKKLTAALCVVLLMICVFVPGAAAAGPALGATRAYCIIDADTGLVLAQQNMNEELHPASI 65
Query: 57 TKLMTAYVVFSFLK--EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
TK+MT + + LT + + S+ ++G + L +AL ++
Sbjct: 66 TKVMTLGLACEKAQGNWDDIKLTVTHEDVYSLAGTDSSHIALREGEEVPLTDALYATMMA 125
Query: 115 SANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND A +AE + + V MN + LGL+ THF N HG+ HYT+ DMA +
Sbjct: 126 SANDGANLLAEYVGEGTIADGVAKMNARVEELGLAHTHFANPHGISDEDHYTSCYDMAQI 185
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV------------GTFLGADGMKTGFT 221
+ + + ++ G K G+T
Sbjct: 186 LRWALEQPGFEQVFTRNEMYTMQPTNIQPVTRYFSQQDKMRIGSSRYYISSILGSKLGYT 245
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT-----DRKKINYI 276
+ ++ A Q LI V + + + +LL F T + I
Sbjct: 246 NTARYSYACLAEQNGVRLICVTMQSELSTDKYNDMRTLLDYAFSTFTGYTDLPAQGITAP 305
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ V V + + + ES+ + +
Sbjct: 306 LSVVGGGGSLGTVTVSDPGVRLLLANGLTADDVEVTLELPESYVLGSDP 354
>gi|320101740|ref|YP_004177331.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera
pallida ATCC 43644]
gi|319749022|gb|ADV60782.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Isosphaera
pallida ATCC 43644]
Length = 702
Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats.
Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 21/269 (7%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ + +D +TG V+ P+ P + AS TK+MTA++V L
Sbjct: 421 AANDPTAVPFVTARAWVAIDADTGRVLGGREPERPLDMASTTKIMTAHLVLKELAAHPEA 480
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK------ 129
+T S A+ P S+S ++G + + L L++ S ND AVA+AE +
Sbjct: 481 RDEVVTFSARAAATPGSSSEVREGERVRVGELLYGLMLPSGNDAAVALAEQFGQRLAARD 540
Query: 130 ------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
+ FV MN ++ LGLSAT F+N HG+ H +A D+A L+ +
Sbjct: 541 GSDGLDPLEAFVAAMNREAQALGLSATRFVNPHGLTAPNHQASALDLARLTRVALENPEF 600
Query: 184 YMHYFQIKGL--------EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ + + + NTN + G G+KTG T ++G +VA QG
Sbjct: 601 AALVATRRRAARLIDGEGKGRTIVWSNTNELLKI-EGFAGVKTGTTSSAGACLVALGQQG 659
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGF 264
++ +I V+LG+ +R + +L F
Sbjct: 660 ERRVIVVVLGSAASASRYADARNLFRWAF 688
>gi|238925625|ref|YP_002939142.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
33656]
gi|238877301|gb|ACR77008.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
33656]
Length = 526
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 61/326 (18%), Positives = 110/326 (33%), Gaps = 24/326 (7%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ P +++ NTG V+ E PAS+TK++T Y+ K + +
Sbjct: 85 TYWPEGPQINSPCAVVMEVNTGTVLYEKNSHEKHYPASITKILTTYLTILNCKMDEKVTF 144
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ + +++ + TM + + A A + L F+
Sbjct: 145 SKEAVKESSDGSSSIKRDVGEEMTMEQTLYGVMLESANECAYAAAEHTGKKLGGDYSTFI 204
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--------------F 181
MN +K LG + THF NA+G+ H+T+A DM ++S +
Sbjct: 205 DLMNKEAKELGCTDTHFNNANGLPDENHWTSAYDMGLISCAAYRNDEFRKITGTKTYIIP 264
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
P H +P +++ G KTG+T + +V A + +L
Sbjct: 265 PTNKHTEDTPLYNHHAMLHPFKSYSQFVNHDCTGGKTGYTSVANSTLVTYAEKDGLTLCV 324
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKIN-------YIIKDFYQQNLSNEVPNISE 294
VI+ A + + +LL+ F N D N +SE
Sbjct: 325 VIMNAQSPDQ-YADTNTLLNYYFSNFKALSIAENENSAAADNTPDLGVMNEHGMYAKVSE 383
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHF 320
+ + + A K +
Sbjct: 384 NYVVLPNNADFSSIKREAADMKSDNK 409
>gi|228918002|ref|ZP_04081534.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228841667|gb|EEM86779.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 423
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 76/332 (22%), Positives = 125/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPKGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S L+ GF N +K K N + +++ P V + Y
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVAQGKEDQVTVAPEKEITVIAKKGSKNPY 342
Query: 307 NTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|332359192|gb|EGJ37013.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK49]
Length = 409
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 65/361 (18%), Positives = 126/361 (34%), Gaps = 41/361 (11%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ +D +G ++ E + P S+T L+T Y+V+ +
Sbjct: 2 TASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDL 61
Query: 75 MLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
T + IS A P ++ + + + + ++ S+N +A+AE L +E
Sbjct: 62 TADTYVDISDYAYNLTANPNISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKLGGSE 121
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVV------------------------QHGHYTTA 167
+ FVQ M K G++ +N+ G+ + +A
Sbjct: 122 ENFVQMMKAKLKEWGITDATIVNSTGLNTLLLEYATEETEYSASASTTKKSKDTENKFSA 181
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCA 223
D+A++S + DFPQ +I G N N+ G DG+K G +
Sbjct: 182 YDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDK 241
Query: 224 SGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI------ 273
G + VA+ + +I V+L D R +ASL++ N T +
Sbjct: 242 GGSSFVATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQNFTQTTIVAEGEAY 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
N S++ ++ +++ + +++ +K T L
Sbjct: 302 NKSKSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGFQAPLKKNTELGTLT 361
Query: 334 T 334
Sbjct: 362 Y 362
>gi|228936676|ref|ZP_04099469.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228823015|gb|EEM68854.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 423
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 76/332 (22%), Positives = 125/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSITLAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S L+ GF N +K K N + +++ P V + Y
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVAQGKEDQVTVAPEKEITVIAKKGSKNPY 342
Query: 307 NTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K +K + + +
Sbjct: 343 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|229156148|ref|ZP_04284246.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
gi|228627331|gb|EEK84060.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
Length = 338
Score = 136 bits (341), Expect = 5e-30, Method: Composition-based stats.
Identities = 73/281 (25%), Positives = 126/281 (44%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ ++G V+ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINAHSGEVVYKKNEETPIQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+ L E L + IS S T+ + L L++
Sbjct: 64 SKLMTEYITLEQLNEGTIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHTLLLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E F Q MN +K L LS NA G+ + TTA ++A
Sbjct: 124 NRSALALAEHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNDTNKLSTTTAIEVAK 183
Query: 173 LSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCAS 224
L+ ++ TDFP ++ ++ K K NTN + G DG++T F+
Sbjct: 184 LATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A +GD LI+VIL A + N+ + LL GF
Sbjct: 244 NYSFVSTAKRGDTRLISVILDAENENSTFIETKKLLQYGFD 284
>gi|326205032|ref|ZP_08194882.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
papyrosolvens DSM 2782]
gi|325984837|gb|EGD45683.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
papyrosolvens DSM 2782]
Length = 405
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 77/338 (22%), Positives = 133/338 (39%), Gaps = 15/338 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLS--IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ VI+ M ++ N FP + AE+ L+DT G V+ +P+ + KL
Sbjct: 4 KIISVIVTMILVLNSFPVFAWTPAESLTSSSVVLMDTVRGQVLFGKNAYKHLSPSVMCKL 63
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTA V L +TISKNA+ + N D +++ + +
Sbjct: 64 MTALVTIEKTD-----LNAKVTISKNAASFNGLNLVVG-NQYTVEDLLYAVMLSQGNDAA 117
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+KFV++MN +K L L T+F+N G+ + YT+A D+A+L +
Sbjct: 118 VALAEYVGDGDIQKFVRYMNTKAKELSLKDTYFVNPTGLYEKSQYTSANDIALLIKAAIS 177
Query: 180 DFPQYMHYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTG-FTCASGFNIVASAIQG 235
+ + + + G N N ++ G DG K G T F+ V +A Q
Sbjct: 178 NNTFNVIFGARGFGWLNGNDSSILTNQNTLFWSYKGVDGGKLGANTNPQSFSAVTTAFQN 237
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE- 294
D+ LIAV+ + +A L GF + I + + +V +S+
Sbjct: 238 DKRLIAVVFN-NSKENAFSETAKLFDYGFSKFYTGVLVPKNIPQRSIEVDNVKVDLVSKI 296
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+V T ++ + K+ E + T+
Sbjct: 297 DVYYTYPVGDSFIKNISFLKN-EKLKLPVNTETIAGVL 333
>gi|315226481|ref|ZP_07868269.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens
DSM 10105]
gi|315120613|gb|EFT83745.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens
DSM 10105]
Length = 483
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 65/323 (20%), Positives = 123/323 (38%), Gaps = 28/323 (8%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + P S + ++ TG V+ + D P AS+TKL+T Y+ +
Sbjct: 39 LAASAAETSSPSTSHMPHVAAAHAYAIEYQTGRVLLDQDGDEPAGIASMTKLITLYLTYK 98
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA---LKLLIVKSANDIAVAIA 124
+ + K +T + +S + + + T + + ++ SAN A+++A
Sbjct: 99 AVAQGKLTWSTKVHVSDYSYQVATNPLTTSADMSRREFTVSDLVNAAMLPSANSAAISLA 158
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--------------GHYTTARDM 170
E + +E KFV M + G++ NA G+ + +A+DM
Sbjct: 159 ERIGGSEPKFVDLMRAQVRAWGITDARIYNASGLNNSFLGSNIYPGSSSKAENALSAKDM 218
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGF 226
AI++W + D+P + + GK TN + G DG+KTG T +G
Sbjct: 219 AIVAWHLIHDYPSILTISKKTQASFGGKTISTTNHMLPGEEAAYPGVDGLKTGTTDEAGA 278
Query: 227 NIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
A+A+ +IAV+ A + R K +L + ++ +
Sbjct: 279 CFTATALVKGMRVIAVVQKADKADADPLARFKAMKTLFDYCYQAYRMVIVVSQGKQ---Y 335
Query: 283 QNLSNEVPNISEEVCTTQKEIIN 305
+ + V + E +
Sbjct: 336 KGSTVAVQDGQERSVIAVADRDW 358
>gi|227876929|ref|ZP_03995025.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus
JV-V01]
gi|256850179|ref|ZP_05555609.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
MV-1A-US]
gi|227863486|gb|EEJ70909.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus crispatus
JV-V01]
gi|256713151|gb|EEU28142.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
MV-1A-US]
Length = 433
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 66/353 (18%), Positives = 129/353 (36%), Gaps = 37/353 (10%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + + +D+++G ++ AS+TKL+T Y+ +K K
Sbjct: 36 TTSSYQADQVKLNVKSAIAIDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKL 95
Query: 75 MLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ I K A+ SN K G + T+ + +++SAN A+ + +++ +
Sbjct: 96 SWDQKVKPTAPIVKVANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGS 155
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWR 176
+K FV M K G+ T A G+ + +A+DMAI+
Sbjct: 156 QKAFVDQMRAQVKKWGIEDTKIYTACGLPNGNVGKDAYPGVNKNAENSMSAKDMAIVGQN 215
Query: 177 IKTDFPQYMHYFQIKGLEI----KGKKYPNTNWA-------VGTFLGADGMKTGFTCASG 225
+ DFP+ + ++ L+ K N NW + DG+KTG T A+G
Sbjct: 216 LIKDFPEVLDTTKLAHLDFKDAGHATKMANFNWMLKGLSQYDPAYP-VDGLKTGTTDAAG 274
Query: 226 FNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+ + LI V++GA R + L++ F +
Sbjct: 275 ACFIGTVQHNGARLITVVMGARHRDGTDPARFMQTKKLMNFIFTKYRPVTMTAGSQMNGA 334
Query: 282 QQNLSNEVPNISEEVCTTQKEIIN---YNTQMKEAKDKESHFIDFEKITLLKN 331
+ + N + + K I + + +K++ +K + +
Sbjct: 335 KTIKVTDGDNATTNLGLKNKTTIWDPADGKTLVASLNKKTVEAPIKKDQTIGD 387
>gi|229181636|ref|ZP_04308961.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
gi|228601832|gb|EEK59328.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
Length = 423
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 74/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 343 KIGTELDKSLAEDGHLVAPIKKDAKVGSITLE 374
>gi|258645732|ref|ZP_05733201.1| methylenetetrahydrofolate reductase [Dialister invisus DSM 15470]
gi|260403101|gb|EEW96648.1| methylenetetrahydrofolate reductase [Dialister invisus DSM 15470]
Length = 330
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 75/305 (24%), Positives = 129/305 (42%), Gaps = 29/305 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA---------------ETNKLPYYTLLDTNTGHVIAEN 45
++ FL II+ ++ F ++A L+D NTG +IA+
Sbjct: 12 LKYFLTIISCIVIFTGIGFGTLAYMTPPPPKPPVFPPLPPVGAVSAVLMDGNTGDIIAQK 71
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
+ PAS TK++T + + L I+ A +N + ++L
Sbjct: 72 EGELKIYPASTTKILTCIIALEE---GREKLEADAVITPLAIGQDGTNIGLRSDMPISLH 128
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
L +++ S ND AV++AE++ + F+Q MN + ++G + +HF N +G+ HYT
Sbjct: 129 ELLYGMMLVSGNDAAVSVAETVGGSYGGFIQMMNEKAVSIGATRSHFANPNGLTDKNHYT 188
Query: 166 TARDMAILSWRIKTDFP----QYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGF 220
TA DMA +S + + ++ + N N + + GA+G+KTG
Sbjct: 189 TAIDMAKISRYAMGNPEFRKIVREKVYPMRYRSGVYRNVENRNEFLSNGYRGANGIKTGM 248
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF---YNKTDRKKINYII 277
T A+G +VASA + Q LIA + D R K + GF ++
Sbjct: 249 TMAAGECLVASAERDGQLLIAAV---YDDENRWKDVEAWFDYGFACIRAWEKYEQEMAGE 305
Query: 278 KDFYQ 282
Y+
Sbjct: 306 PAVYK 310
>gi|94264946|ref|ZP_01288718.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium
MLMS-1]
gi|94267812|ref|ZP_01290999.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium
MLMS-1]
gi|93451851|gb|EAT02592.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium
MLMS-1]
gi|93454602|gb|EAT04877.1| Serine-type D-Ala-D-Ala carboxypeptidase [delta proteobacterium
MLMS-1]
Length = 359
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 68/291 (23%), Positives = 124/291 (42%), Gaps = 9/291 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L+ S+ ++D +G +I PD P PAS K++TA + L+E
Sbjct: 76 LTGGAVAASLERQITARTAVVIDAASGRLIYSLNPDTPRQPASTIKVITALIALDSLREH 135
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ T S+ A++ P S ++G + + + ++++SAND AVA+AE + E+
Sbjct: 136 AMVPT-----SRRAAQMPRSKVYLQQGRSYRAGDLVDAILMRSANDAAVALAEKIAGNER 190
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F + M + + +G + T NA+G+ G +TARD+A++ + P+
Sbjct: 191 AFARLMTSKVRAMGANNTTLRNANGLTAQGQQSTARDLALILH-RAMEHPELAQRLGTVS 249
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
G+ +N A+ G+ G KTGFT A+ V +G+ LI ++G+
Sbjct: 250 TNGLGQTMRTSNRALWQINGSQGGKTGFTRAAQQTYVGKFQRGNHELIVALMGSTT---M 306
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
L++ GF ++ + D S V + +
Sbjct: 307 WDDVRQLVNYGFQQIGNQALMAAAPVDPAFTRQPTATAASSLTVLSDAAKS 357
>gi|146305107|ref|YP_001185572.1| D-alanyl-D-alanine endopeptidase [Pseudomonas mendocina ymp]
gi|145573308|gb|ABP82840.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Pseudomonas mendocina ymp]
Length = 300
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 66/265 (24%), Positives = 107/265 (40%), Gaps = 11/265 (4%)
Query: 5 LVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L++ A ++SN+ + + L+D TG + + PD AS+TKLMTA
Sbjct: 10 LLLSAGLVVSNLQAAPAQPQQELAAGSALLIDLKTGKELYSSNPDLRLPVASVTKLMTAM 69
Query: 64 VVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV K L + I+ ++ E S + GS ++ + L L ++ S N A +
Sbjct: 70 VVLDA----KLPLDEVLPITIRDTKEMQGVYSRVRIGSEISRRDMLHLALMSSENRAAAS 125
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A FV MN +K LG+ +HF+ G+ + T ++ +
Sbjct: 126 LAHHYPGGHVAFVAAMNAKAKALGMHNSHFVEPTGMSERNVATARDLALMIKATQQYPLI 185
Query: 183 QYMHYFQIKGLEIKGKKY----PNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQ 237
+ + Y NTN V GM KTGFT A+G +V +
Sbjct: 186 GQFSTDSEATVTFRKPTYTLGFRNTNALVRKPDWDIGMSKTGFTNAAGRCLVMLTSMNQR 245
Query: 238 SLIAVILGALDRNTRNKVSASLLSM 262
S+ V+LGA + T + L
Sbjct: 246 SVAFVVLGAFGKYTHMADANRLKRW 270
>gi|326407895|gb|ADZ64966.1| D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp.
lactis CV56]
Length = 435
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 76/391 (19%), Positives = 141/391 (36%), Gaps = 58/391 (14%)
Query: 1 MRQFLVIIAMAMLS----------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYP-DH 49
M++ +I ++S + T +D ++G ++ D
Sbjct: 1 MKKIAIIFCSFLISLSVLSGFSVSAATTPTTNDFTVAAKSAIAIDASSGKILYAQNADDA 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS+TKL+TAY+V+ + E K T + IS A E +++ +K
Sbjct: 61 STRIASITKLLTAYLVYKNVAENKLTWNTKVPISDYAYELTQNSNASNIPLVQNGQYTVK 120
Query: 110 LLIV----KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--- 162
L+ SAN AVA+AE + +E KFV M K+ G++ +H +NA G+
Sbjct: 121 DLLNALLLPSANSAAVALAEKIAGSEPKFVDMMTKQMKDWGITDSHLVNASGLPNDDLNG 180
Query: 163 -----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA 206
+ +A+ +A LS+ + DFP+ + + + NTN
Sbjct: 181 HIYPGSGASATNTMSAKAVATLSYHLIQDFPEILQITKKTEIPFDTGNEAKMTLTNTNQM 240
Query: 207 VGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSAS 258
+ F G DG+KTG T + Q +I V+L A D +T ++
Sbjct: 241 LSGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDPAADNSTPFTLTNQ 300
Query: 259 LLSMGFYNKTDRKKINYI------IKDFYQQNLSNEVPNISEEVCTTQ----------KE 302
L++ + + + + V ++ + T +
Sbjct: 301 LMNYVYGHWRTTSLVQKNKSLDDFKEIAVTDGKEKSVQLVAPQNITPVVPYATDGSADTK 360
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ K+ E+ +K+ L +
Sbjct: 361 SLTVKFSKKKTASVEATVTKNQKLVTLSTTV 391
>gi|281492939|ref|YP_003354919.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactococcus lactis
subsp. lactis KF147]
gi|281376591|gb|ADA66077.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactococcus lactis
subsp. lactis KF147]
Length = 435
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 77/391 (19%), Positives = 143/391 (36%), Gaps = 58/391 (14%)
Query: 1 MRQFLVIIAMAMLS----------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYP-DH 49
M++ +I ++S + T +D ++G ++ D
Sbjct: 1 MKKIAIIFCSFLISLSVLSGFSVSAATTPTTNDFTVAAKSAIAIDASSGKILYAQNADDA 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLD 105
AS+TKL+TAY+V+ + E K T + IS A SN + T+
Sbjct: 61 STRIASITKLLTAYLVYKNVAENKLTWNTKVPISDYAYELTQNSNASNIPLAQNGQYTVK 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--- 162
+ L L++ SAN AVA+AE + +E KFV M K+ G++ +H +NA G+
Sbjct: 121 DLLNALLLPSANSAAVALAEKIAGSEPKFVDMMTKQMKDWGITDSHLVNASGLPNDDLNG 180
Query: 163 -----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA 206
+ +A+ +A LS+ + DFP+ + + + NTN
Sbjct: 181 HIYPGSGASATNIMSAKAVATLSYHLIQDFPEILQITKKTEIPFDTGNEAKMTLTNTNQM 240
Query: 207 VGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSAS 258
+ F G DG+KTG T + Q +I V+L A D +T ++
Sbjct: 241 LSGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDPAADNSTPFTLTNQ 300
Query: 259 LLSMGFYNKTDRKKINYI------IKDFYQQNLSNEVPNISEEVCTTQ----------KE 302
L++ + + + + V ++ + T +
Sbjct: 301 LMNYVYGHWRTTSLVQKNQSLDDFKEITVTDGKEKSVQLVAPQNITPVVPYATDGSADTK 360
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ ++ E+ +K+ L +
Sbjct: 361 SLTVKFSKEKTASVEATVTKNQKLVTLSTTV 391
>gi|94993641|ref|YP_601739.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS10750]
gi|94547149|gb|ABF37195.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS10750]
Length = 410
Score = 136 bits (341), Expect = 6e-30, Method: Composition-based stats.
Identities = 69/364 (18%), Positives = 141/364 (38%), Gaps = 29/364 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + + +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHAIAVALESGKVLYEKDAKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+AI++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKI-- 273
++ +G + VA++++ +I V+L A D K + LL N + I
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQLIEN 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ--MKEAKDKESHFIDFEKITLLKN 331
N +K + S + + + + I+ T+ + K + K +L
Sbjct: 302 NKPVKTLSVLDSSEKTVKLVAQNSLFFIKPIHTKTKNTVHITKKSSTMIAPLSKGQVLGR 361
Query: 332 KITK 335
+
Sbjct: 362 ATLQ 365
>gi|295116026|emb|CBL36873.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SM4/1]
Length = 528
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 72/338 (21%), Positives = 125/338 (36%), Gaps = 30/338 (8%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P ++D ++G V+ + PAS+ KL+TA VV
Sbjct: 27 ALAAPEWPSDTGIMADIGIVIDADSGAVLFGQGIHNQSPPASIAKLLTALVVVENS---- 82
Query: 74 AMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L +T S +A + ++G +++ + L LL+++S+N A A+AE +
Sbjct: 83 -SLDDMVTFSHDAVYNVESGSGNKKNIEEGDVLSVRDCLYLLLLQSSNQAANALAEHVAG 141
Query: 130 TEKKFVQHMNNTSKNLGL-SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ FV+ MN LG THF N G+ + +A DMA+++ D Q
Sbjct: 142 SRDAFVEMMNEKVSELGCVDDTHFANPSGLNDDTQHVSAYDMALIAK-AAFDNQQVYEIA 200
Query: 189 QIKGLE-------IKGKKYPNTNW--------AVGTFLGADGMKTGFTCASGFNIVASAI 233
K + G N + + + A KTG+T +G +V A
Sbjct: 201 STKSYKLPATINNPNGVTCTNEHRLIITEDETSELYYPAAKAGKTGYTSLAGNTLVTCAE 260
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ + LI+VIL +LL GF + + + E ++
Sbjct: 261 EDGRCLISVILKGQPSPNYFLDGKNLLQFGFERFQNLSV----PDNETRYVTGEEFVAVN 316
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ I T + KD E +T+L +
Sbjct: 317 GTEYSPSDLEIEAGTVITIPKDASFQDAALELVTVLPD 354
>gi|229118879|ref|ZP_04248226.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
gi|228664535|gb|EEL20030.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
Length = 423
Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats.
Identities = 76/332 (22%), Positives = 128/332 (38%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N+ +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANDHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS I T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNGENSMSARDMGILSKTIITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G+DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGSDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S +L+ GF + +K + +E+ K+
Sbjct: 283 ERFTESRALIEYGFNSFKKQKLKIDKNNTISVVKGKADQVTVAPEKEITVIAKKGDKSPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K T + + + +
Sbjct: 343 KISTEADKSLAEDGHLIAPIKKDTKVGSIVLE 374
>gi|118477954|ref|YP_895105.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
Hakam]
gi|118417179|gb|ABK85598.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
Hakam]
Length = 338
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 72/274 (26%), Positives = 118/274 (43%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + L+D N+G V+ + + A+L+KLMT Y
Sbjct: 11 LLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEETSIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V L + L + IS S T+ + L L++ N +A+
Sbjct: 71 IVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRSTLAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E F Q MN +K L LS NA G+ + TTA ++ L+ R+ T
Sbjct: 131 AEHIAGNEDNFTQLMNEKAKQLKLSQPFPFLNATGMNNGTNKLSTTTAIEVGKLATRLVT 190
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ + K N + G DG++T F+ S ++ V++
Sbjct: 191 DFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A +GD LI+VIL A + N+ + LL GF
Sbjct: 251 AKRGDTRLISVILDADNENSTFIETKKLLQYGFD 284
>gi|297569645|ref|YP_003690989.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Desulfurivibrio alkaliphilus AHT2]
gi|296925560|gb|ADH86370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Desulfurivibrio alkaliphilus AHT2]
Length = 365
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 62/241 (25%), Positives = 108/241 (44%), Gaps = 8/241 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
++D TG ++ PD P PAS K++TA + L++ ++ S
Sbjct: 93 ITARSAVVVDPTTGRLLFALNPDQPRQPASTIKIVTALIAMQSLRD-----QELVSTSAR 147
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A+ P S + G + + + ++ SAND +VA+AE + +E F + M + ++ +
Sbjct: 148 AARMPRSKIYLQAGRSYRAGDLINATLLSSANDASVALAERIAGSEAAFARLMTSKARAM 207
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
G + T N++G+ G +TARD+AI+ R + G+ N
Sbjct: 208 GATNTVIHNSNGLTARGQQSTARDLAIILHRSMQNPEFARRLGTTSASTNFGQTLRTNNR 267
Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A+ GA+G KTGFT A+ V +G+Q LI ++G+ + L+ GF
Sbjct: 268 ALWQINGAEGGKTGFTRAARQTYVGKFKRGNQELIVALMGSDT---MWEDVGQLVEYGFR 324
Query: 266 N 266
Sbjct: 325 Q 325
>gi|293379842|ref|ZP_06625964.1| beta-lactamase [Lactobacillus crispatus 214-1]
gi|290923614|gb|EFE00495.1| beta-lactamase [Lactobacillus crispatus 214-1]
Length = 433
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 65/352 (18%), Positives = 130/352 (36%), Gaps = 35/352 (9%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + + +D+++G ++ AS+TKL+T Y+ +K K
Sbjct: 36 TTSSYQADQVKLNVKSAIAIDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKL 95
Query: 75 MLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ I K A+ SN K G + T+ + +++SAN A+ + +++ +
Sbjct: 96 SWDQKVKPTAPIVKVANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGS 155
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWR 176
+K F+ M K G+ A G+ + +A+DMAI+ +
Sbjct: 156 QKAFIDQMRAQVKKWGIEDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQK 215
Query: 177 IKTDFPQYMHYFQIKGLEI----KGKKYPNTNWAVG---TFLG---ADGMKTGFTCASGF 226
+ + FP+ + ++ L K N NW + + DG+KTG T A+G
Sbjct: 216 LISAFPEVLETTRLAHLNFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGA 275
Query: 227 NIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+ + LI V++GA R + L++ F + +
Sbjct: 276 CFIGTVQHNGARLITVVMGARHRDGTDPARFMQTKKLMNFIFTKYRPVTMTAGSQMNGAK 335
Query: 283 QNLSNEVPNISEEVCTTQKEIIN---YNTQMKEAKDKESHFIDFEKITLLKN 331
+ N + + QK I + + +K+S +K + +
Sbjct: 336 TIKVVDGDNATTNLGLKQKTTIWDPADGKTLVASLNKKSVEAPIKKDQTVGD 387
>gi|153938979|ref|YP_001390767.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum F str. Langeland]
gi|152934875|gb|ABS40373.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum F str. Langeland]
gi|295318839|gb|ADF99216.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum F str. 230613]
Length = 424
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 73/339 (21%), Positives = 137/339 (40%), Gaps = 15/339 (4%)
Query: 5 LVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
L+I + + SN+F + + T +D TG +I D PAS TK +T
Sbjct: 11 LLIFILTLTSNVFAAGNSNTESPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKYLT 70
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A ++ + + T S+ + G T+ +N + L++ S ND+A
Sbjct: 71 ALLLAENKGKNDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLFSGNDVAY 130
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
I ++L K F MN + L L THF+ +G+ HYTTA D++++S +
Sbjct: 131 MIGDALAGNNKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSVISRAALKNP 190
Query: 182 PQY----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
Y I + N+N +G G KTG+T A+G +V + +
Sbjct: 191 WVYQSSNKKESSIVTSKGTKMTIENSNKLLGK-DGCVAGKTGYTDAAGRCLVTLFNRDGR 249
Query: 238 SLIAVILGA---LDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPN 291
++ V++G+ + + ++ + K +K + + L P+
Sbjct: 250 KILGVVMGSVYDAKDSFVFQDMKKIIDWSYNVKPSTLYKKDSSLKTETVTYNPLKIIGPS 309
Query: 292 ISEEVCTTQKEIIN-YNTQMKEAKDKESHFIDFEKITLL 329
++ +V KE + Y ++ + + ++ ID L
Sbjct: 310 VTIDVPIILKEDVTYYKNEVNDKEANKTINIDNTSYAAL 348
>gi|118480420|ref|YP_897571.1| D-alanyl-D-alanine carboxypeptidase A [Bacillus thuringiensis str.
Al Hakam]
gi|118419645|gb|ABK88064.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
[Bacillus thuringiensis str. Al Hakam]
Length = 441
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 61 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 121 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 180
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 181 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 240
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 300
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K Q +E+ K+
Sbjct: 301 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKDPY 360
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 361 KIGTEVDKSLAEDGHLVAPIKKNVKVGSITLE 392
>gi|225026550|ref|ZP_03715742.1| hypothetical protein EUBHAL_00799 [Eubacterium hallii DSM 3353]
gi|224956099|gb|EEG37308.1| hypothetical protein EUBHAL_00799 [Eubacterium hallii DSM 3353]
Length = 491
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 73/326 (22%), Positives = 125/326 (38%), Gaps = 13/326 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
LS A ++D NTG ++ D PAS+TK+MTA + K +
Sbjct: 69 ISNLSGAPDIVAESAVVMDANTGTILYGKEADTKRYPASITKVMTALLAVENCKMSDVI- 127
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T + N E S + G+ +T++++L L++ SAN+ A AIAE + + +F +
Sbjct: 128 -TYSNAAVNGIEAGSSTAGINVGAKLTVEDSLYALMLVSANEAAAAIAEHISGSTTEFAK 186
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY----MHYFQIKG 192
M +K LG + T F N HG+ HYTTA DM ++ + +K
Sbjct: 187 LMTKRAKELGCTNTQFKNPHGLPNEEHYTTAHDMGLILKEAMKHEEFRKISGTISYTLKK 246
Query: 193 LEIKGKKYPNTNW-------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ N + + A+G KTGFT + +V A + + LI VIL
Sbjct: 247 SDTLKDTLELWNHAKILRENSDYYYKYAEGAKTGFTQVALNTLVTYAKKDNVELICVILK 306
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
+ +A+L F + ++ + +++
Sbjct: 307 DYGADKSYTDTANLFKWAFNQVKSVTPLTDFSLKTAMTANTSIDSSKLDQIQLLNSVYDK 366
Query: 306 YNTQMKEAKDKESHFIDFEKITLLKN 331
+ + + ES K+ K
Sbjct: 367 NFSVLVKKDFNESDLKTAFKLDEDKK 392
>gi|308270080|emb|CBX26692.1| hypothetical protein N47_A07210 [uncultured Desulfobacterium sp.]
Length = 370
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 84/351 (23%), Positives = 138/351 (39%), Gaps = 35/351 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLDTNTGHVIAENYPDH 49
F+++I+ S + L + +D TG ++ PD
Sbjct: 24 FVIVISFCFHSGLIFALDNNPKLQNKTNYKNKSNIATYTRAAVAMDVTTGKILYAKNPDL 83
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
PAS TKLMTA V L +T+SK AS P + FK G +T++ L
Sbjct: 84 KCFPASTTKLMTAIVSIENAD-----LNNLVTVSKTASNVSPHKAGFKAGDKVTVEKLLY 138
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA-- 167
+V SAND AVA+AE + + FV+ MN + +G S T F+N +G+ G Y TA
Sbjct: 139 AALVGSANDAAVALAEGVSGSVDGFVELMNKKAVAIGASNTRFINPNGLPGPGQYITASD 198
Query: 168 --RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+ + K + +I L+ NTN + + G KTG+T +G
Sbjct: 199 LSKILQYALRYPKLREIIGTRFAEITTLDGMPIHLKNTNKLLWSDEEVIGGKTGYTRRAG 258
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT-----------DRKKIN 274
V +A + + +I +LG+ R K S +L++ GF K + +
Sbjct: 259 HCFVGAAERENDKIIIALLGSPSRKDLWKQSETLIAKGFEIKENSEEPLVYCTQTKPLLA 318
Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD-KESHFIDFE 324
+ ++ S + +K + +M + K D +
Sbjct: 319 KTSYKNRTTIRNKKIKKHSGKRSILRKSKKHKRDRMIAKNNYKYKDIADNK 369
>gi|168180431|ref|ZP_02615095.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC
2916]
gi|182668648|gb|EDT80626.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum NCTC
2916]
Length = 378
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 75/317 (23%), Positives = 128/317 (40%), Gaps = 14/317 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ +D +TG V+ E + AS TK+MT V + L
Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANEIVPIASTTKIMTTLVALKY-----GDLD 86
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I IS+NA + S ++KG +TL L L+++S ND A+AIAE + + + F +
Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKITLRELLYGLMLRSGNDAAIAIAEGIAGSIEGFSKL 146
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARD----MAILSWRIKTDFPQYMHYFQIKGL 193
MN + +GL +HF+ HG+ + HY+TA D A + + +
Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ Y N N + ADG+KTG+T +G +V S+ D +I V+L R
Sbjct: 207 NF-TRDYQNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINDNDIIIVVLNCT---PRW 262
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE-EVCTTQKEIINYNTQMKE 312
+ + + N +K V I++ ++ K +Y+ ++ +
Sbjct: 263 NETTKIHNYVKNNYDFKKICTRGDILDQAVFEEGSVNIIADKDIIIPFKNGADYSIKINK 322
Query: 313 AKDKESHFIDFEKITLL 329
K+ E L
Sbjct: 323 PKELNWKVKKGEDFGSL 339
>gi|153933846|ref|YP_001384111.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
ATCC 19397]
gi|153934860|ref|YP_001387651.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum A str.
Hall]
gi|152929890|gb|ABS35390.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
botulinum A str. ATCC 19397]
gi|152930774|gb|ABS36273.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
botulinum A str. Hall]
Length = 378
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 73/317 (23%), Positives = 126/317 (39%), Gaps = 14/317 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ +D +TG V+ E + AS TK+MT V + L
Sbjct: 32 SQKNKPPYINARCAIAIDKDTGIVLFEKSANGIVPIASTTKIMTTLVALKY-----GDLD 86
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I IS+NA + S ++KG + L L L+++S ND A+AIAE + + + F +
Sbjct: 87 RKIEISENADKIRGSVVGYRKGEKIALRELLYGLMLRSGNDAAIAIAEGIAGSVEGFSKL 146
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARD----MAILSWRIKTDFPQYMHYFQIKGL 193
MN + +GL +HF+ HG+ + HY+TA D A + + +
Sbjct: 147 MNEYASEIGLLNSHFITPHGLDKDEHYSTAYDLALATATAKKYELFNKIVSSKDVKKEEY 206
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ Y N N + ADG+KTG+T +G +V S+ +I V+L R
Sbjct: 207 NF-TRDYHNINKILWKIPEADGVKTGYTGKAGKCLVTSSKINGNDIIIVVLNCT---PRW 262
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE-EVCTTQKEIINYNTQMKE 312
+ + + N +K V I++ ++ K +Y+ ++ +
Sbjct: 263 NETTKIHNYVKNNYDFKKICTRGDILDQAVFEEGSVNIIADKDIIIPFKNGADYSIKINK 322
Query: 313 AKDKESHFIDFEKITLL 329
K+ E L
Sbjct: 323 PKELNWKVKKGEDFGSL 339
>gi|324989891|gb|EGC21833.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK353]
Length = 409
Score = 135 bits (340), Expect = 7e-30, Method: Composition-based stats.
Identities = 64/361 (17%), Positives = 125/361 (34%), Gaps = 41/361 (11%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ +D +G ++ E + P S+T L+T Y+V+ +
Sbjct: 2 TASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLLTIYLVYEAIDRGDL 61
Query: 75 MLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
T + IS A P ++ + + + + ++ S+N +A+AE + +E
Sbjct: 62 TADTYVDISDYAYNLTSNPNISNVPLEAKRYKVKDLIAASLMSSSNSATIALAEKVGGSE 121
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVV------------------------QHGHYTTA 167
+ FVQ M K G+ +N+ G+ + +A
Sbjct: 122 ENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASASTAKKSKDTENKFSA 181
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCA 223
D+A++S + DFPQ +I G N N+ G DG+K G +
Sbjct: 182 YDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDK 241
Query: 224 SGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI------ 273
G + VA+ + +I V+L D R +ASL++ N T +
Sbjct: 242 GGSSFVATTTENGIRMITVVLDVDQTDGDPYARFVATASLMNYVSQNFTQTTIVAEGEAY 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
N S++ ++ +++ + +++ +K T L
Sbjct: 302 NKSRSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGFKAPLKKNTELGTLT 361
Query: 334 T 334
Sbjct: 362 Y 362
>gi|325571073|ref|ZP_08146645.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus
casseliflavus ATCC 12755]
gi|325156158|gb|EGC68344.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus
casseliflavus ATCC 12755]
Length = 411
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 59/319 (18%), Positives = 120/319 (37%), Gaps = 34/319 (10%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + + +D +TG V+ + + AS+TK+++ Y+V +++
Sbjct: 63 TAMSAEEIQDFSVDAKAAYSIDFDTGKVLYDQDGETAMGIASITKIISLYLVAEQVEQGT 122
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK---- 129
P+ IS A+ S + + +K L S A A +L +
Sbjct: 123 IAWDDPVPISDYAANLSVSPNLSNVPLHQDVTYTVKDLYDASYIQSANAAIVALAELIAG 182
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYTTARDMAILSW 175
+E FV M ++ G++ +NA G+ + +A+D+A+++
Sbjct: 183 SESAFVDQMQEKVQSWGITDAKIVNASGLNNTYLGDNIYPGSTSTDENELSAKDVALIAR 242
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTF----LGADGMKTGFTCASGF 226
+ DFP + + + Y N NW + F G DG+KTG T +G
Sbjct: 243 HLLQDFPDVLEVTSLSTKQFGEGSYSPVEMVNWNWMLPGFTNTKDGVDGLKTGTTDMAGA 302
Query: 227 NIVASAIQGDQSLIAVILG----ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
V +A++ Q +I V+L A + + R + L+ F + + ++
Sbjct: 303 CFVGTAVKDGQRIITVVLNVNGHAENPSVRFIETGRLMDYSFDAWEQVEIL---PENAQL 359
Query: 283 QNLSNEVPNISEEVCTTQK 301
++ +E+
Sbjct: 360 EDTQTVAVKDGKELSVPVA 378
>gi|229094501|ref|ZP_04225570.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
gi|229124894|ref|ZP_04254070.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
gi|228658524|gb|EEL14188.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
gi|228688885|gb|EEL42715.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
Length = 441
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 61 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 121 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 180
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 181 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 240
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 300
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K Q +E+ K+
Sbjct: 301 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKNPY 360
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 361 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 392
>gi|49477760|ref|YP_036665.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329316|gb|AAT59962.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 338
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 71/274 (25%), Positives = 118/274 (43%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + L+D N+G V+ + + A+L+KLMT Y
Sbjct: 11 LLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEETSIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V L + L + IS S T+ + L L++ N +A+
Sbjct: 71 IVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRSTLAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E F Q MN +K L LS NA G+ + TTA ++ L+ R+ T
Sbjct: 131 AEHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNGTNKLSTTTAIEVGKLATRLVT 190
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ + K N + G DG++T F+ S ++ V++
Sbjct: 191 DFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A +G+ LI+VIL A + N+ + LL GF
Sbjct: 251 AKRGNTRLISVILDADNENSTFIETKKLLQYGFD 284
>gi|170755178|ref|YP_001781058.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum B1 str. Okra]
gi|169120390|gb|ACA44226.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum B1 str. Okra]
Length = 424
Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats.
Identities = 74/339 (21%), Positives = 137/339 (40%), Gaps = 15/339 (4%)
Query: 5 LVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
L+I + + SN+F + + T +D TG +I D PAS TK +T
Sbjct: 11 LLIFILTLTSNVFAAGNSNTESPTIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKYLT 70
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A ++ + + T S+ + G T+ +N + L++ S ND+A
Sbjct: 71 ALLLAENKGKNDNIPYTATAKSQPQYSLNINLHPIDIGETIKAENVMDGLLLFSGNDVAY 130
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
I ++L K F MN + L L THF+ +G+ HYTTA D++++S +
Sbjct: 131 MIGDALAGNNKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSVISRAALKNT 190
Query: 182 PQY----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
Y I + N+N +G G KTG+T A+G +V + +
Sbjct: 191 WVYQSSNKKESSIVTSKGTKMTIENSNKLLGK-DGCVAGKTGYTDAAGRCLVTLFNRDGR 249
Query: 238 SLIAVILGA---LDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPN 291
++ V++G+ + + ++ + K +K + + L P+
Sbjct: 250 KILGVVMGSVYDAKDSFVFQDMKKIIDWSYNVKPSTLYKKDSSLKTETVTYNPLKIIGPS 309
Query: 292 ISEEVCTTQKEIIN-YNTQMKEAKDKESHFIDFEKITLL 329
++ +V KE I Y ++ + + ++ ID L
Sbjct: 310 VTIDVPIILKEDITYYKNEVNDKEANKTINIDNTSYAAL 348
>gi|327488930|gb|EGF20727.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK1058]
Length = 409
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 64/361 (17%), Positives = 126/361 (34%), Gaps = 41/361 (11%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ +D +G ++ E + P S+T L+T Y+V+ +
Sbjct: 2 TANKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDL 61
Query: 75 MLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
T + IS A P ++ + + + + + ++ S+N +A+AE + +E
Sbjct: 62 TADTYVDISDYAYSLTSNPNISNVPLEAKSYKVKDLIAASLMSSSNSATIALAEKVGGSE 121
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVV------------------------QHGHYTTA 167
+ FVQ M K G+ +N+ G+ + +A
Sbjct: 122 ENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSASASTFKKSKDTENKFSA 181
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCA 223
D+A++S + DFPQ +I G N N+ G DG+K G +
Sbjct: 182 YDLAVISRHLIMDFPQVTEITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDK 241
Query: 224 SGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI------ 273
G + VA+ + +I V+L D R +ASL++ N T +
Sbjct: 242 GGSSFVATTTENGIRMITVVLDVDQTDGDPYARFVATASLMNYVSQNFTQTTIVAEGEAY 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
N S++ ++ +++ + +++ +K T L
Sbjct: 302 NKSKSTVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGFQAPLKKNTELGTLT 361
Query: 334 T 334
Sbjct: 362 Y 362
>gi|65317369|ref|ZP_00390328.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A2012]
Length = 441
Score = 135 bits (339), Expect = 8e-30, Method: Composition-based stats.
Identities = 76/332 (22%), Positives = 125/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 61 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 121 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 180
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 181 NATGLNNTDLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 240
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 300
Query: 251 TRNKVSASLLSMGFYNKTDRK----KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R S L+ GF N +K K N + +++ P V + Y
Sbjct: 301 ERFTESRELIEYGFNNFEKQKLKVDKNNTLSVAQGKEDQVTVAPEKEITVIAKKGSKNPY 360
Query: 307 NTQMKEAKDKES---HFIDFEKITLLKNKITK 335
+ K +K + + +
Sbjct: 361 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 392
>gi|296268658|ref|YP_003651290.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora
bispora DSM 43833]
gi|296091445|gb|ADG87397.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thermobispora
bispora DSM 43833]
Length = 388
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 59/262 (22%), Positives = 104/262 (39%), Gaps = 13/262 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
K Y + D +TG V+A P + PAS K +TA + L +K+ +
Sbjct: 62 PPKTKAAAYLVADADTGDVLAAKDPHGHYRPASTLKALTAITLIPKLDKKRV-----VRP 116
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S A S T+++ + L++ S ND A A+AE+ K MN +
Sbjct: 117 SPEACNEEGSAVGLVPKPIYTVEDLFRALLMVSGNDAANALAEANGGMRKTL-AEMNQVA 175
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGK 198
+ L T G+ + G ++A D+A+++ P + Y K +
Sbjct: 176 RRLQAYDTVAKTPSGLDRPGQRSSAYDLALIARAGLA-MPDFRRYVSTKVAKFPAPKGHY 234
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ N N +G + G G+K G+T + + V +A + ++I VI+ A
Sbjct: 235 EIANHNRLLGRYQGMIGVKNGWTSKALGSFVGAATRNGHTIIVVIMRHPGWF--WDEVAD 292
Query: 259 LLSMGFYNKTDRKKINYIIKDF 280
LL GF + + ++
Sbjct: 293 LLDWGFAVRGKVTPVGTLVPPL 314
>gi|209558811|ref|YP_002285283.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine-
endopeptidase) [Streptococcus pyogenes NZ131]
gi|209540012|gb|ACI60588.1| Penicillin-binding protein 7 precursor (PBP-7) (D-alanyl-D-alanine-
endopeptidase) [Streptococcus pyogenes NZ131]
Length = 395
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 70/353 (19%), Positives = 139/353 (39%), Gaps = 27/353 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + +D +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+A+++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAVIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKI-- 273
++ +G + VA++++ +I V+L A D K + LL N + I
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQLIEN 301
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
N +K Y + + + + I+ T+ K+S D I
Sbjct: 302 NKPVKTLYVLDSPEKTVKLVAPNSLFFIKPIHTKTKNTVHITKKSSTNDRTSI 354
>gi|258651532|ref|YP_003200688.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nakamurella
multipartita DSM 44233]
gi|258554757|gb|ACV77699.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nakamurella
multipartita DSM 44233]
Length = 550
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 67/257 (26%), Positives = 109/257 (42%), Gaps = 10/257 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
++ + + D +TG V+A P + PAS KL+TA V+ L
Sbjct: 97 IVPANSPALPSDISAGAWLIADLDTGEVLAAKDPHGRYRPASTLKLLTAQVMLKNLT--- 153
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
L + ++ + + + G T T+ + L L++ S ND A A+A + +K
Sbjct: 154 -NLDQVVQGTQADTAQDGTRVGIEAGGTYTVRDLLSYLVMISGNDAANALARTNGGYDKT 212
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
MN T+K LG T G+ G T+A D+A+ + FP+ + I+
Sbjct: 213 IAD-MNATAKALGALDTRAATPSGLDGPGQSTSAYDLALFAKADMAIAPFPEIIARPDIR 271
Query: 192 GLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
G+ Y N N + + GA G KTGFT +G V A + + L+ ++ +
Sbjct: 272 VPAASGEGYIAANDNQLLAQYPGALGGKTGFTDDAGNTFVGMAAKDGRRLVVTMMHGTQQ 331
Query: 250 NTR-NKVSASLLSMGFY 265
R +ASLL GF
Sbjct: 332 PRRQWMQAASLLDWGFA 348
>gi|229091549|ref|ZP_04222757.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
gi|228691773|gb|EEL45522.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
Length = 338
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 77/274 (28%), Positives = 125/274 (45%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + L+D N+G V+ + + P A+L+KLMT Y
Sbjct: 11 LLSFVITALIVLYFYLYVNGPIVQAKSAILIDANSGEVVYKKNEETPIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ L E L + IS S T+ + L L++ N A+A+
Sbjct: 71 ITLEQLNEGTIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHTLLLTGNNRSALAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLG-LSATHFMNAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E KF Q MN +K+L ++ F+NA G+ + TTA ++A L+ ++ T
Sbjct: 131 AEHIAGNEDKFTQLMNEKAKHLKLSQSSPFLNATGMNNDTNKLSTTTAIEVAKLATQLVT 190
Query: 180 DFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ K K NTN + G DG++T F+ ++ V++
Sbjct: 191 DFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSTNGNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A QGD LI+VIL A + N+ + LL GF
Sbjct: 251 AKQGDTRLISVILDAENENSTFIETKKLLQYGFD 284
>gi|196040350|ref|ZP_03107651.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
NVH0597-99]
gi|196028835|gb|EDX67441.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
NVH0597-99]
Length = 338
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 76/274 (27%), Positives = 125/274 (45%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + L+D N+G V+ + + A+L+KLMT Y
Sbjct: 11 LLSFVITALIVLYFYLYVNGPIVQAKSAILIDANSGEVVYKKNEETSIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V L + L + IS S T+ + L L++ N A+A+
Sbjct: 71 IVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHTLLLTGNNRSALAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLG-LSATHFMNAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E KF Q MN +K+L ++ F+NA G+ + TTA ++A L+ ++ T
Sbjct: 131 AEHIAGNEDKFTQLMNEKAKHLKLSQSSPFLNATGMNNDTNKLSTTTAIEVAKLATQLVT 190
Query: 180 DFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ K K NTN + G DG++T F+ ++ V++
Sbjct: 191 DFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSTNGNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A QGD LI+VIL A + N+ + LL GF
Sbjct: 251 AKQGDTRLISVILDAENENSTFIETKKLLQYGFD 284
>gi|328880472|emb|CCA53711.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC
10712]
Length = 421
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 48/287 (16%), Positives = 101/287 (35%), Gaps = 16/287 (5%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
P + + D ++G V+A PAS K + A + +
Sbjct: 66 VQPLPGAPGVPEVSALSWVVADASSGEVLAARNAHRKLPPASTLKALFALTALPYQEP-- 123
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ S+ S+ K + L + S+ + AV + ++ +
Sbjct: 124 -SAQHTVADSELTGIGDGSSLVGVKEGYTYKVSDLWNGVFLSSGNDAVHVLAAMNGGWES 182
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
+ M +++LG TH ++ G G ++A D+A+ D + Y
Sbjct: 183 MSRRMQEKARSLGAMDTHVVSPDGYDAPGQVSSAYDLAVFGRAGLQDPA-FTKYCSTAYA 241
Query: 194 EIKGKKYP----NTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + NTN V + G G+K G+T +G ++++A +GD++L+ +
Sbjct: 242 DFPAGSWSYGIANTNRLLTGADGVARYPGLIGIKNGYTSNAGNTLISAARRGDRTLVVSV 301
Query: 244 LG--ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ + + LL GF + + ++ + S
Sbjct: 302 MNPQGGGGLAVYEEARDLLDWGFAAAGRVQPVGSLLPVRTKAAGSAA 348
>gi|315505734|ref|YP_004084621.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Micromonospora
sp. L5]
gi|315412353|gb|ADU10470.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
sp. L5]
Length = 428
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 63/260 (24%), Positives = 103/260 (39%), Gaps = 11/260 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + + D +TG V+ P PAS KL+ A + S L K
Sbjct: 81 LVVPPGSPAPPAVTATTWLVADLDTGEVLGACGAHVPGTPASTQKLLLAATMLSRLDPKH 140
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ T E S G +++ L+++S ND A +A + +
Sbjct: 141 VAVATRA---DLDIEPGSSAVGLLVGGRYSVETLWLGLLLQSGNDAANMLARLGAGSAQA 197
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-------PQYMH 186
V MN ++ LG TH + G+ G +T+A D+A+++ D +
Sbjct: 198 GVAEMNEQARRLGAGQTHAVTPSGLDGPGQFTSAYDLALIARACFADAAFRRYALTERTQ 257
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
L+ G + N N + + GA G KTGFT + + V +A + + L+ +LGA
Sbjct: 258 IPAQPALKKGGFQIQNENQLIYRYPGALGGKTGFTELARHSYVGAAQRDGRRLVVTLLGA 317
Query: 247 LDRNTR-NKVSASLLSMGFY 265
R R + A LL F
Sbjct: 318 EARPVRGWQQGAQLLDWAFR 337
>gi|302867864|ref|YP_003836501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
aurantiaca ATCC 27029]
gi|302570723|gb|ADL46925.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
aurantiaca ATCC 27029]
Length = 427
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 63/260 (24%), Positives = 103/260 (39%), Gaps = 11/260 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P + + D +TG V+ P PAS KL+ A + S L K
Sbjct: 80 LVVPPGSPAPPAVTATTWLVADLDTGEVLGACGAHVPGTPASTQKLLLAATMLSRLDPKH 139
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ T E S G +++ L+++S ND A +A + +
Sbjct: 140 VAVATRA---DLDIEPGSSAVGLLVGGRYSVETLWLGLLLQSGNDAANMLARLGAGSAQA 196
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-------PQYMH 186
V MN ++ LG TH + G+ G +T+A D+A+++ D +
Sbjct: 197 GVAEMNEQARRLGAGQTHAVTPSGLDGPGQFTSAYDLALIARACFADAAFRRYALTERTQ 256
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
L+ G + N N + + GA G KTGFT + + V +A + + L+ +LGA
Sbjct: 257 IPAQPALKKGGFQIQNENQLIYRYPGALGGKTGFTELARHSYVGAAQRDGRRLVVTLLGA 316
Query: 247 LDRNTR-NKVSASLLSMGFY 265
R R + A LL F
Sbjct: 317 EARPVRGWQQGAQLLDWAFR 336
>gi|228975468|ref|ZP_04136023.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228784262|gb|EEM32286.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
Length = 441
Score = 135 bits (339), Expect = 9e-30, Method: Composition-based stats.
Identities = 74/332 (22%), Positives = 121/332 (36%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 61 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAES----LCKTEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + + L ++EK F+ N +K LGL F+
Sbjct: 121 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAESEKNFLNLANEHAKKLGLKKYKFV 180
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 181 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKVMITKYPEMLEDTKQRFRNFPDNH 240
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDLRLISVIIKTKSMD 300
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
R S L+ GF N +K + ++ E T
Sbjct: 301 ERFTESRELIEYGFNNFEKQKLKVDKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKDPY 360
Query: 311 KEAKDKES-------HFIDFEKITLLKNKITK 335
K + + +K + + +
Sbjct: 361 KIGTELDKSLAEDGHLVAPVKKDAKVGSITLE 392
>gi|196043568|ref|ZP_03110806.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
03BB108]
gi|196025877|gb|EDX64546.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
03BB108]
Length = 338
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 70/274 (25%), Positives = 117/274 (42%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + L+D N+G V+ + + A+L+KLMT Y
Sbjct: 11 LLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEETSIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V L + L + IS S T+ + L L++ N +A+
Sbjct: 71 IVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRSTLAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E F Q MN +K L LS NA G+ + TTA ++ L+ R+ T
Sbjct: 131 AEHIAGNEDNFTQLMNEKAKQLKLSQPFPFLNATGMNNGTNKLSTTTAIEVGKLATRLVT 190
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ + K N + G DG++T F+ ++ V++
Sbjct: 191 DFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A +GD LI+VIL + + N+ + LL GF
Sbjct: 251 AQRGDTRLISVILDSNEENSTFIETKKLLQYGFD 284
>gi|291548476|emb|CBL21584.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
Length = 415
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 60/306 (19%), Positives = 112/306 (36%), Gaps = 15/306 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
V ++ + +N +++ + ++ D +PA K+MT +
Sbjct: 33 VAVSSGVTTNGISGWPQGPEITSASAVIMEDISDTILYAKDMDTTLSPAGAVKIMTCLLA 92
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+ + T +S ++ + + G T++ L L++ SANDIA+ +AE
Sbjct: 93 LENSQLDDQVTMTETGVS--GVTDGGAHISSQLGEVFTMEQCLYALMLASANDIALQVAE 150
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+ + FVQ MN+ +K LG + T F N G+ +TTA D+A++ +
Sbjct: 151 QIGGSVDAFVQKMNDRAKELGCTNTVFTNPTGLPDDNQHTTAHDLALIMQAAIRNDSFRT 210
Query: 186 HYFQIKG-----------LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + + G G + T ASG +V +A +
Sbjct: 211 ISGATSYTIPATNVSGGTRNLTSSFTMTDPASASYYEGCIGGRESTTTASGSVLVTAAQR 270
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
+LIAV++ T + SLL GF N + +
Sbjct: 271 NGTTLIAVVMNGATGQT-ATEAISLLDYGFSNFQLLDL-SEDDFHILSGGTVMVPSGATA 328
Query: 295 EVCTTQ 300
+ TT+
Sbjct: 329 DDLTTE 334
>gi|238852512|ref|ZP_04642924.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri
202-4]
gi|238834859|gb|EEQ27084.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri
202-4]
Length = 308
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 64/291 (21%), Positives = 119/291 (40%), Gaps = 30/291 (10%)
Query: 5 LVIIAMAML---------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+V+IA+ L S + + + +D G+VI + AS
Sbjct: 18 IVVIAICFLLWKNNFGPNSMPSNYHANQVDLNVKSAVAIDAKNGNVIYAKNANQSLPIAS 77
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLL 111
+TKL+TAY+ +KEKK T ++ ++ ++ G T+
Sbjct: 78 MTKLLTAYLTLKAIKEKKISWDTTVSPTQEIINLGSNPDYASVPLNLGQKYTVKELYDAA 137
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---------- 161
++KSAN+ A +A ++ E F+ M + L F+ G+ +
Sbjct: 138 LIKSANNAARMLAIAVSGNETNFLNQMRQQANKWKLHNVKFVTVDGLPEKKKNFLGMTTT 197
Query: 162 -GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA------VGTFLGAD 214
+ +A DMAI++ ++ TD+P+ ++ ++ + N+N D
Sbjct: 198 IENKMSANDMAIIARKLVTDYPEVLNTTKVAKTYFRNTLMTNSNKMLNGLSDYDPNYPVD 257
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
G+KTG T +G + + ++ +I VILGA + N R + LL+ F
Sbjct: 258 GLKTGTTDGAGSCFTCTVDKNNKRVITVILGAQNDNERFSETKKLLNYSFN 308
>gi|229084940|ref|ZP_04217192.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-44]
gi|228698256|gb|EEL50989.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus Rock3-44]
Length = 340
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 71/254 (27%), Positives = 126/254 (49%), Gaps = 12/254 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++ ++D + G V+ +N + PAS++K+MTAY++ + K + IS
Sbjct: 84 PVVEVKAAMIIDASDGQVMYKNNEEEQLAPASMSKMMTAYILLENIHNGKVHWDDQVKIS 143
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+++ + + G +T+ + L+++SAN+ AVA+AE + KTE+ F Q MN T+K
Sbjct: 144 AKSAQAEGARIPVQTGDVLTVKDLYHALMIQSANNSAVALAEHMAKTEQDFAQVMNQTAK 203
Query: 144 NLGLSA-THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
L LS T F NA G+ T D+A L++R+ D+P+ + ++ ++
Sbjct: 204 QLELSEATKFANASGLQEADGSETKMTVADVAKLAYRLVKDYPEILDVTHLRQSQLAFNN 263
Query: 200 YP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
N G DG+KTGFT ++G+ +A QGD+ ++ V++G
Sbjct: 264 ITVTSTNEMLNPANQELYMEGMDGLKTGFTDSAGYCFTGTAKQGDKRIVTVVMGTKSEMK 323
Query: 252 RNKVSASLLSMGFY 265
R + L+S GF
Sbjct: 324 RFTETHKLMSYGFE 337
>gi|312897437|ref|ZP_07756861.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera
micronuciformis F0359]
gi|310621498|gb|EFQ05034.1| serine-type D-Ala-D-Ala carboxypeptidase [Megasphaera
micronuciformis F0359]
Length = 326
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/316 (20%), Positives = 126/316 (39%), Gaps = 20/316 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + L F L+D TG V+ D P T +M
Sbjct: 6 MKKLALCAMVWCLGLASSFAVSDGEIHARAAVLMDAQTGEVLYSKNGDEKLYPGGTTMIM 65
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSAND 118
TA + +L + S + ++ + +TL NAL ++ + D
Sbjct: 66 TALLGAEA---GDTVLDGAVHFSDDVTKLDRDVAVLGISADHPVTLRNALTAMMTYTGCD 122
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A+ A ++ + FV MN+ + +G + THF N HG+ H +TA+D+A ++
Sbjct: 123 AALDTAVTVAPSVADFVHMMNDKAVAIGATNTHFTNPHGLPDANHVSTAKDLAKIAVYAM 182
Query: 179 TDF----PQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ F + ++ + N + + GA+G+KTG T G +VASA
Sbjct: 183 QNQTFKSFTGRTSFVMPYTNGGSQEVFSMNEFLNSGYKGANGIKTGATDYGGATLVASAT 242
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+GD++ + IL + + R+ + L+ F T ++ ++ + V
Sbjct: 243 RGDKTYVVSILNS---DNRSGDAKLLMDFAFAETTAIDAVSK-------EDGKSAVAEKK 292
Query: 294 EEVCTTQKEIINYNTQ 309
E T +++ Y +
Sbjct: 293 ENKTTPEEDAEAYTLR 308
>gi|331092072|ref|ZP_08340903.1| hypothetical protein HMPREF9477_01546 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402273|gb|EGG81844.1| hypothetical protein HMPREF9477_01546 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 423
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 78/331 (23%), Positives = 139/331 (41%), Gaps = 29/331 (8%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN ++D TG ++ D PAS+TK++TA V +
Sbjct: 51 SNAIQNWPQGPQVYGDSAIVMDMKTGAILYAKGIDEERYPASITKILTALVAIENSQ--- 107
Query: 74 AMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+T + S+ + + ++ K G +T+ +AL L++ SAN++A AI E++ T
Sbjct: 108 --MTDMVKFSEESIQSLEPGYAHIAMKAGEEITMKDALHALMLASANEVAYAIGETVGGT 165
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD---------- 180
+ F++ MN+ +K LG + THF+N +G+ HYT+ARDMA+++ +
Sbjct: 166 HENFIKMMNDKAKELGCTHTHFINTNGMFDEQHYTSARDMALIARAAFSHQELLDIVQTL 225
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
I +K+ G KTG+T + +V QGD ++
Sbjct: 226 QYTIPPTNMESEPRIFQQKHKMLLNGKYHDNRCIGGKTGYTEKAYNTLVTVMEQGDMEIV 285
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AVI+ R + + + F N + S++V +I E C T
Sbjct: 286 AVIM--RSRRDTFEDTKKICDYAFNNFREVNISA--------NEKSDKVSDIDGEACVTL 335
Query: 301 KEIINYNT-QMKEAKDKESHFIDFEKITLLK 330
+ I +N + KDK ++ + + + K
Sbjct: 336 PKNIEFNQLSRQYEKDKVNYCYEGQFVGETK 366
>gi|295835113|ref|ZP_06822046.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
gi|295825314|gb|EFG64181.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
Length = 322
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 70/262 (26%), Positives = 112/262 (42%), Gaps = 20/262 (7%)
Query: 23 AETNKLPYYTLLDTNTG----HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + + LLD G + A D AS TK+MTA VV + + +T
Sbjct: 63 APAVEAGHAFLLDARDGSQERELWAGADADESVPVASTTKIMTAVVVLKHPEWLERRITV 122
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK------TEK 132
E S + + G T+T L +++ S D A A+A++
Sbjct: 123 KQEYRDYVQEVGASTADLQTGDTLTARQLLHAMLIPSGADAARALADNFGNGDTEEARIA 182
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F+ MN ++ LGL THF + G+ Q +++TARD+A L R +
Sbjct: 183 DFIAQMNAEAQQLGLKGTHFDSVDGISQGNNHSTARDLAKLGQRAMLQPVFAEVVKNTQY 242
Query: 193 LE--------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ + NTN +GT+ GA G+KTG G+ +V +A + +++LI V+L
Sbjct: 243 KTEAPAANGRTRYYTWNNTNELLGTYDGALGVKTGSGPEDGYCVVFAAERDNRTLIGVVL 302
Query: 245 GALDRNTRNKVSASLLSMGFYN 266
G D R + +L GF +
Sbjct: 303 G--DDEGRFDDATKILDWGFAH 322
>gi|325697563|gb|EGD39449.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK160]
Length = 409
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/356 (17%), Positives = 124/356 (34%), Gaps = 41/356 (11%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ +D +G ++ E + P S+T L+T Y+V+ ++ T
Sbjct: 7 AADDYNIAAKSAIAVDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIERGDLTADTY 66
Query: 80 ITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ IS A ++ + + + + ++ SAN +A+AE + +E+ FVQ
Sbjct: 67 VDISDYAYNLTADPNISNIPLEAKRYKVKDLIAASLMSSANSATIALAEKVGGSEENFVQ 126
Query: 137 HMNNTSKNLGLSATHFMNAHGVV------------------------QHGHYTTARDMAI 172
M K G+ +N+ G+ + +A D+A+
Sbjct: 127 MMKAKLKEWGIKDATIVNSTGLNTLLLEYASEETDYTASASTAKKSKDTENKFSAYDLAV 186
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNI 228
+S + DFPQ +I G N N+ G DG+K G + G +
Sbjct: 187 ISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGISEKGGSSF 246
Query: 229 VASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIK------ 278
VA+ + +I V+L D R +ASL++ N T +
Sbjct: 247 VATTTENGIRMITVVLDVEQTDGDPYARFVATASLMNYVSQNFTQTTIVAEGEAYNKSHS 306
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
S++ ++ +++ + +++ +K T L
Sbjct: 307 TVIDGKQKTVPAVASKDFTIIERIANQAEHKVEFSTNEKGFQAPLKKNTELGTLTY 362
>gi|229187618|ref|ZP_04314756.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
gi|228595870|gb|EEK53552.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
Length = 441
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 75/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 61 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 120
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 121 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 180
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 181 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 240
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 241 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 300
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K Q +E+ K+
Sbjct: 301 ERFTESRELIEYGFNNFKKQKLKVDKNNTLSVVQGKEDQVTVAPEKEITVIAKKGSKNPY 360
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 361 KIGTEVDKSLAEDGHLVAPIKKDAKVGSITLE 392
>gi|325675587|ref|ZP_08155271.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC
33707]
gi|325553558|gb|EGD23236.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus equi ATCC
33707]
Length = 444
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 60/337 (17%), Positives = 107/337 (31%), Gaps = 29/337 (8%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + L D +TG V+A P + PAS K++ A V
Sbjct: 106 VVTAPGTPPLPAEISATGWVLSDLDTGQVLAAKDPHGRYRPASTIKVLLALVALDE---- 161
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L T I + A+ S+ G T + ++ L+++S ND A A+A+ E+
Sbjct: 162 -LDLDTTIVANPEAASMEGSSVGLGAGGTYSNLQLMQGLVMRSGNDAAQALAQ-QLGGEQ 219
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP---------- 182
V MN + +LG S T + G+ G T+ D+A+ +
Sbjct: 220 ATVAKMNAKAASLGASDTRTASVSGLDGPGMSTSPYDLALFFRAAMQNPTFAGLITTDTV 279
Query: 183 ----QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + N N + + GA G KTG+T + V A + +
Sbjct: 280 MFPGHPADPTKPDDKPVDPYPIFNDNQLLANYPGALGGKTGYTDDARQTFVGGAERDGRR 339
Query: 239 LIAVILGALDRNTR-NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
L ++ A R + LL G+ + +V
Sbjct: 340 LAVTLMAADVLPIRPWEQVGRLLDYGWA--------LDPAVSVGVLVDPKGADEPAVQVA 391
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + I ++ + I
Sbjct: 392 GPETHGPGGMDLASGSDLPNKEVAGRVAIGIVGSGIV 428
>gi|116513223|ref|YP_812130.1| D,D-carboxypeptidase PBP3 [Lactococcus lactis subsp. cremoris SK11]
gi|116108877|gb|ABJ74017.1| D,D-carboxypeptidase PBP3, Serine peptidase, MEROPS family S11
[Lactococcus lactis subsp. cremoris SK11]
Length = 434
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 82/382 (21%), Positives = 145/382 (37%), Gaps = 50/382 (13%)
Query: 1 MRQFLVIIAMAMLS---------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYP-DHP 50
M++ +I ++S + + T +D ++G ++ D
Sbjct: 1 MKKIAIIFCTLLMSLSVLSGFAVSADTTTTNNFTVAAKSAIAIDASSGKILYAQNADDAS 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDN 106
AS+TKL+TAY+V+ + E K TT + IS A SN + T+ +
Sbjct: 61 TRIASITKLLTAYLVYKNVAENKLTWTTKVPISDYAYELTQNSNASNIPLAQNGQYTVKD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG---- 162
L L++ SAN AVA+AE + +E KFV M K+ G++ +H +NA G+
Sbjct: 121 LLNALLLPSANSAAVALAEKIAGSEPKFVDMMTAQMKDWGITDSHLVNASGLPNDDLNGH 180
Query: 163 ----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAV 207
+ +A+ +A LS+ + DFP+ + + + NTN +
Sbjct: 181 IYPGSGASATNTMSAKAVATLSYHLIQDFPEVLQITKKTEIPFDTGNEEKMTLTNTNQML 240
Query: 208 GTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASL 259
F G DG+KTG T + Q +I V+L A D +T ++ L
Sbjct: 241 SGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDPAADNSTPFTLTNQL 300
Query: 260 LSMGFYNKTDRKKINYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
++ + + + + V ++ + T + Y T
Sbjct: 301 MNYVYGHWRTTNLVQKNQSLDDFKEIAVTDGKEKSVQLVAPQNVTPV---VPYATDGSAD 357
Query: 314 KDKESHFIDFEKITLLKNKITK 335
D +K ++ ITK
Sbjct: 358 TKPLVIKFDKKKNATVEATITK 379
>gi|229173210|ref|ZP_04300759.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
gi|228610294|gb|EEK67567.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
Length = 338
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 76/274 (27%), Positives = 120/274 (43%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
FL + A++ F + L+D N+G V+ + + P A+L+KLMT Y
Sbjct: 11 FLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEETPIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ L E K L + IS S T+ + L L + N A+A+
Sbjct: 71 ITLEQLNEGKIQLDELVKISNEVFRAETSPIQVTSKDKTTVRDLLHALFLTGNNRSALAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E F MN +K L LS NA G+ + TTA D+A L+ ++
Sbjct: 131 AEHIAGNEDNFTLLMNEKAKQLKLSQPSPFLNATGMNNDTNKQSTTTAIDVAKLATQLVK 190
Query: 180 DFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ K K NTN + G DG++T F+ ++ V++
Sbjct: 191 DFPDVLNITELTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A +GD LI+VIL + + N+ + LL GF
Sbjct: 251 AKRGDTRLISVILDSNEENSTFIETKKLLQYGFD 284
>gi|169630315|ref|YP_001703964.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium abscessus
ATCC 19977]
gi|169242282|emb|CAM63310.1| Probable D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium
abscessus]
Length = 287
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 56/275 (20%), Positives = 101/275 (36%), Gaps = 18/275 (6%)
Query: 3 QFLVIIAMAMLSNI------FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ L ++++ LS + + + + D ++G ++A P PAS
Sbjct: 11 RALAVLSVLFLSTLPVGVARADMAAPPPEGPAQAWLVADLDSGQILAARDPYATHAPAST 70
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ A V + ++ + K G T T L +++S
Sbjct: 71 IKVLLALVALDEVPMDATVVADAADAKAECNCV-----GIKAGQTYTARELLDAALLESG 125
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT--ARDMAILS 174
ND A +A L + V MN + LG ++TH + G+ G D+A++
Sbjct: 126 NDAANTLA-HLLGGRQATVDKMNAKAAALGATSTHTDSPSGLDAPGMDMRTSPHDLAVIF 184
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ P + G+ N N + + G G KTGFT + V +A +
Sbjct: 185 RAALAN-PVFAEITAQPSAPFPGRGLHNQNELMYRYPGVIGGKTGFTDIARKTYVVAAER 243
Query: 235 GDQSLIAVILGA---LDRNTRNKVSASLLSMGFYN 266
+ L+ ++ T +ASL GF N
Sbjct: 244 DGKRLVVSMMYGLVHEGGPTYWDQAASLFDWGFVN 278
>gi|28210687|ref|NP_781631.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
gi|28203125|gb|AAO35568.1| D-alanyl-D-alanine carboxypeptidase [Clostridium tetani E88]
Length = 419
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 73/360 (20%), Positives = 140/360 (38%), Gaps = 25/360 (6%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M++ + ++A M+ + + A LD +TG +I PD P
Sbjct: 1 MKKKFISSLLATFMIFSSTSGVYAANTNTQPNIYGKSAITLDMDTGEIIYAKSPDDKMYP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TKL+T+ ++ + + T + + G TM +A+ L++
Sbjct: 61 ASTTKLITSLLLAENKNKDDDLTYTKDAKDQPEYSLNKNLHAISVGETMKASDAMDGLLL 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND+A I +++ + F + MN +K+L L ++F+N +G+ HYTT+ D++IL
Sbjct: 121 YSGNDVAYLIGDNIGGNREGFAKLMNEKAKSLNLKNSNFVNPNGLHHKDHYTTSYDLSIL 180
Query: 174 SWRIKTDFPQY----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ + + N N VG+ G G KTG+T A+G +V
Sbjct: 181 GRAAYKNPWVSETMAKKNSSVSTSKGTTFLIENRNKLVGS-KGCVGGKTGYTSAAGRCLV 239
Query: 230 ASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNKTDR----------KKINYI 276
A + + ++ V+L + + + ++ + + K ++Y
Sbjct: 240 AIFDRDGRKILGVVLNSVYDANDSFVFNDMEKIIDWSYKAEKTILHNKDSVVGTKTVSYK 299
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
F + +VP I +E +IN N + + K + K+
Sbjct: 300 PLLFMGPVKTIDVPLIVKEDVAYYNNVINKNEFKESVSLNTENPWKLAKSDSVGKLTIKE 359
>gi|15674245|ref|NP_268420.1| D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp.
lactis Il1403]
gi|12725334|gb|AAK06361.1|AE006455_7 D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp.
lactis Il1403]
Length = 435
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 77/391 (19%), Positives = 143/391 (36%), Gaps = 58/391 (14%)
Query: 1 MRQFLVIIAMAMLS----------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYP-DH 49
M++ +I ++S + T +D ++G ++ D
Sbjct: 1 MKKIAIIFCSFLISLSVLSDFSVSAATTPTTNDFTVAAKSAIAIDASSGKILYAQNSDDA 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLD 105
AS+TKL+TAY+V+ + E K T + IS A SN + T+
Sbjct: 61 STRIASITKLLTAYLVYKNVAENKLTWNTKVPISDYAYELTQNSNASNIPLAQNGQYTVK 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--- 162
+ L L++ SAN AVA+AE + +E KFV M K+ G++ +H +NA G+
Sbjct: 121 DLLNALLLPSANSAAVALAEKIAGSEPKFVDMMTKQMKDWGITDSHLVNASGLPNDDLNG 180
Query: 163 -----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWA 206
+ +A+ +A LS+ + DFP+ + + + NTN
Sbjct: 181 HIYPGSGASATNTMSAKAVATLSYHLIQDFPEILQITKKTEIPFDTGNEAKMTLTNTNQM 240
Query: 207 VGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSAS 258
+ F G DG+KTG T + Q +I V+L A D +T ++
Sbjct: 241 LSGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDPAADNSTPFTLTNQ 300
Query: 259 LLSMGFYNKTDRKKINYI------IKDFYQQNLSNEVPNISEEVCTTQ----------KE 302
L++ + + + + V ++ + T +
Sbjct: 301 LMNYVYGHWRTTSLVQKNQSLDDFKEITVIDGKEKSVQLVAPQNITPVVPYATDGSADTK 360
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ ++ E+ +K+ L +
Sbjct: 361 SLTVKFSKEKTASVEATVTKNQKLVTLSTTV 391
>gi|301054094|ref|YP_003792305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
gi|300376263|gb|ADK05167.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
anthracis str. CI]
Length = 327
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 71/271 (26%), Positives = 116/271 (42%), Gaps = 12/271 (4%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ A++ F + L+D N+G V+ + + A+L+KLMT Y+V
Sbjct: 3 FVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEETSIQSATLSKLMTEYIVL 62
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L + L + IS S T+ + L L++ N +A+AE
Sbjct: 63 EQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRSTLALAEH 122
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSWRIKTDFP 182
+ E F Q MN +K L LS NA G+ + TTA ++ L+ R+ TDFP
Sbjct: 123 IAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNGTNKLSTTTAIEVGKLATRLVTDFP 182
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNIVASAIQ 234
++ ++ + K N + G DG++T F+ S ++ V++A +
Sbjct: 183 DVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVSTAKR 242
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
GD LI+VIL A N+ + LL GF
Sbjct: 243 GDTRLISVILDADSENSTFIETKKLLQYGFD 273
>gi|240169097|ref|ZP_04747756.1| penicillin-binding protein DacC [Mycobacterium kansasii ATCC 12478]
Length = 408
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 61/295 (20%), Positives = 110/295 (37%), Gaps = 12/295 (4%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+A + + + + D ++G VIA P PAS+ K++ A
Sbjct: 76 ALAGCGIITAPDTPPVPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASIIKVLVAMAAI 135
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ L + + + + + G T T++ L L++ S ND A A+A
Sbjct: 136 NE-----LNLNKSVAGTDDDAAAEGTKVGVDAGGTYTVNQLLHGLLMHSGNDAAHALARQ 190
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ--- 183
L + + +N + LG T G+ G T+A D+ + +
Sbjct: 191 LGGMQMAL-EKINVLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWRNPTFADI 249
Query: 184 --YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
Y + G + N N + + GA G KTG+T +G V +A + + L+A
Sbjct: 250 VATRSYDFPGHGDHPGYELENDNQLLYHYPGALGGKTGYTDDAGQTFVGAANRNGRRLMA 309
Query: 242 VIL-GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
V+L G + +A LL GF + + I D + ++ N +
Sbjct: 310 VLLHGTRQPIAPWEQAAHLLDYGFSTPAGTQVGSLIEPDPALASGKDKPANRQPD 364
>gi|52142940|ref|YP_083889.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
gi|51976409|gb|AAU17959.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
Length = 338
Score = 135 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 72/281 (25%), Positives = 126/281 (44%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ ++G V+ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINAHSGEVVYKKNEETPIQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+ L E L + IS S T+ + L L++
Sbjct: 64 SKLMTEYITLEQLNEGTIQLDEVVKISNEVFRAETSPIQVISKDKTTVRDLLHTLLLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E KF Q MN +K L LS NA G+ + TTA ++A
Sbjct: 124 NRSALALAEHIAGNEDKFTQLMNEKAKQLKLSQLSPFLNATGMNNDTNKLSTTTAIEVAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ ++ TDFP ++ ++ + K N + G DG++T F+ S
Sbjct: 184 LATQLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNS 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A +GD LI+VIL A + N+ + LL GF
Sbjct: 244 NYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFD 284
>gi|324992344|gb|EGC24265.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK405]
Length = 409
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 62/361 (17%), Positives = 123/361 (34%), Gaps = 41/361 (11%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ +D +G ++ E + P S+T L+T Y+V+ +
Sbjct: 2 TASKVAADDFNIAAKSAMAVDATSGKILYEKDANTPIEVGSITNLLTVYLVYEAIDRGDL 61
Query: 75 MLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
T + IS A P ++ + + + ++ S+N +A+AE + +E
Sbjct: 62 TADTYVDISDYAYTLTSNPNISNVPLEAKRYKAKDLIAASLMSSSNSATIALAEKVGGSE 121
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVV------------------------QHGHYTTA 167
+ FVQ M K G+ +N+ G+ + +A
Sbjct: 122 ENFVQMMKAKLKEWGIKDATIVNSTGLNTLLLEYATEETEYSTSASTAKKSKDTENKFSA 181
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCA 223
D+A++S + DFPQ +I G N N+ G DG+K G +
Sbjct: 182 YDLAVISRHLIMDFPQVTDITSKSTAKIAGTSLENYNFMLENQSNFRSGVDGLKAGSSDK 241
Query: 224 SGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIK- 278
G + VA+ + +I V+L D R +ASL++ N T +
Sbjct: 242 GGSSFVATTTENGIRMITVVLDVDQTDGDPYARFVATASLMNYVSQNFTQTTIVAEGEAY 301
Query: 279 -----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+++ ++ +++ + +++ +K T L
Sbjct: 302 NKSHSTVIDGKQKTVPAVANKDFTIIERIANQAEHKVEFSTNEKGFQAPLKKNTELGTLT 361
Query: 334 T 334
Sbjct: 362 Y 362
>gi|291005226|ref|ZP_06563199.1| putative penicillin-binding protein [Saccharopolyspora erythraea
NRRL 2338]
Length = 365
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 11/245 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ L D +G V+A PAS K++TA V ++ + ++
Sbjct: 43 VSAASWILADVTSGEVLAARDSHARHRPASAIKVLTALVAIR-----DLNMSDTLVATQA 97
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
++ S G T T++ + L+++S ND A A+A L + MN + +L
Sbjct: 98 DADQEGSRVGLHPGVTYTVEQVVTGLLMQSGNDAAHALAMKL-GGPEVMTARMNELAHHL 156
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP----QYMHYFQIKGLEIKGKKYP 201
G T G+ G ++A D+A++ + + G + +
Sbjct: 157 GALDTRAATPSGLDGPGMSSSAYDLALVFRAAMQRPEFARAINTQHTVLPGPPGQPLEVW 216
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVSASLL 260
+ N + + GA G KTGFT + +A+A + + ++AV+L ++ R + + LL
Sbjct: 217 SDNAVLLNYAGALGGKTGFTDDARHTFIAAAERDGRRIVAVLLRGENQPLRLSSQTMRLL 276
Query: 261 SMGFY 265
GF
Sbjct: 277 DYGFT 281
>gi|254820249|ref|ZP_05225250.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium intracellulare
ATCC 13950]
Length = 407
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 56/265 (21%), Positives = 101/265 (38%), Gaps = 12/265 (4%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+A + + + + D ++G VIA P PAS+ K++ A
Sbjct: 73 ALASCGIVAAPNTPPLPGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAI 132
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L + + + + + ++G T++ L L++ S ND A A+A
Sbjct: 133 -----NTLNLNKSVAGTADDAAAEGTKVGVQEGGVFTVNQLLHGLLMHSGNDAAHALAMQ 187
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ--- 183
L ++ + +N + LG T G+ G T+A D+ + +
Sbjct: 188 LGGMQQAL-EKINVLAAKLGGQDTRVATPSGLDAPGMSTSAYDIGLFYRYAWQNPTFANI 246
Query: 184 --YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + G + N N + + GA G KTG+T +G V +A + L+A
Sbjct: 247 VATRTFDFPGHGDHPGYELENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVA 306
Query: 242 VIL-GALDRNTRNKVSASLLSMGFY 265
V+L G + +A LL GF
Sbjct: 307 VLLHGTRQPIAPWEQAAHLLDYGFA 331
>gi|134103018|ref|YP_001108679.1| putative penicillin-binding protein [Saccharopolyspora erythraea
NRRL 2338]
gi|133915641|emb|CAM05754.1| putative penicillin-binding protein [Saccharopolyspora erythraea
NRRL 2338]
Length = 430
Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats.
Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 11/245 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ L D +G V+A PAS K++TA V ++ + ++
Sbjct: 108 VSAASWILADVTSGEVLAARDSHARHRPASAIKVLTALVAIR-----DLNMSDTLVATQA 162
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
++ S G T T++ + L+++S ND A A+A L + MN + +L
Sbjct: 163 DADQEGSRVGLHPGVTYTVEQVVTGLLMQSGNDAAHALAMKL-GGPEVMTARMNELAHHL 221
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP----QYMHYFQIKGLEIKGKKYP 201
G T G+ G ++A D+A++ + + G + +
Sbjct: 222 GALDTRAATPSGLDGPGMSSSAYDLALVFRAAMQRPEFARAINTQHTVLPGPPGQPLEVW 281
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVSASLL 260
+ N + + GA G KTGFT + +A+A + + ++AV+L ++ R + + LL
Sbjct: 282 SDNAVLLNYAGALGGKTGFTDDARHTFIAAAERDGRRIVAVLLRGENQPLRLSSQTMRLL 341
Query: 261 SMGFY 265
GF
Sbjct: 342 DYGFT 346
>gi|228903867|ref|ZP_04067982.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
4222]
gi|228855776|gb|EEN00321.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
4222]
Length = 423
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 73/332 (21%), Positives = 125/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K +GL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKVGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
N+ G+ + +ARDM IL+ I T +P+ + + +
Sbjct: 163 NSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW ++ G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 283 ERFTESRELIEHGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K T + + +
Sbjct: 343 KIGTELDKSLAEDGHLVAPVKKDTKVGSITLE 374
>gi|187734951|ref|YP_001877063.1| Serine-type D-Ala-D-Ala carboxypeptidase [Akkermansia muciniphila
ATCC BAA-835]
gi|187425003|gb|ACD04282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Akkermansia muciniphila
ATCC BAA-835]
Length = 307
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 17/258 (6%)
Query: 17 FPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
FP +A + P ++D TG V+ + AS KL+TA VV
Sbjct: 53 FPTRPVAIPSSAPRTPRCASACVMDALTGKVLFSHNGLQHRQVASTQKLVTAMVVMEH-- 110
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L + I + ++ P+ F+ G + L ++++S ND+A+A+A +
Sbjct: 111 ---GSLDKKVVIQPSDTKADPTKLGFRAGEVYSRRELLNAMMIRSFNDVALALARDTAGS 167
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+F Q MN ++ +G+ + F N +G+ Y+TA DMA ++ + + +
Sbjct: 168 VPRFAQLMNAKARQMGMYNSRFANPNGLPA-DQYSTAIDMARCAYYVYRNPELRNIICKR 226
Query: 191 KGLEIKGKK----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ + NTN + GMKTG+T A+G +V+SA + +I V+LG
Sbjct: 227 QYAFTRANGRTLLLRNTNKLLTQNPWVTGMKTGYTNAAGRCLVSSAGVNGRHVIVVVLGC 286
Query: 247 LDRNTRNKVSASLLSMGF 264
S +L+
Sbjct: 287 HPSRI-WTESENLIRWAL 303
>gi|197302181|ref|ZP_03167240.1| hypothetical protein RUMLAC_00907 [Ruminococcus lactaris ATCC
29176]
gi|197298612|gb|EDY33153.1| hypothetical protein RUMLAC_00907 [Ruminococcus lactaris ATCC
29176]
Length = 464
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 63/343 (18%), Positives = 124/343 (36%), Gaps = 21/343 (6%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
SN ++D N+G ++ D P PAS+TKL+T V K
Sbjct: 53 SNGLTNWPQGPAVYADSAIVMDMNSGAILYGKQIDKPHYPASITKLLTTLVALDHAKLTD 112
Query: 74 AMLTTPITIS--KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ + +IS + + + + +L L + + +A ++ + +
Sbjct: 113 KVEFSQDSISFLQYGDAHIGMRAGEELTLEDSLYAVLLASANEVSYAVAESVGKQMGGDY 172
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
F++ MN S LG + +H+ NA+G+ HYTTA DMA++ + +
Sbjct: 173 NTFIEAMNEESDALGCTGSHWTNANGLHDEQHYTTAHDMALIGAAVYQKEAFRTIAQSLT 232
Query: 192 GL-----------EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ K + G KTG+T + +V A G+ L+
Sbjct: 233 HQIPPTNLVNEVRTVNQKHKMLWPQNANYYEYCKGGKTGYTDQARTTLVTMADNGELQLV 292
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN----YIIKDFYQQNLSNEVPNISEEV 296
AV+L + + ++ GF N + + ++ + + + V + +
Sbjct: 293 AVVLYDFGSDA-YTDTRAIFDYGFNNFSKVMLKDLEKADGVRSYKDEENAYVVLPPNVKF 351
Query: 297 CTTQKEIINYNTQMKEAK---DKESHFIDFEKITLLKNKITKK 336
+ E+ + + E E + +TL K +K
Sbjct: 352 SDLKAEVKAKDGSVNEGTVTYTYEGQIVGKADVTLDNKKSVEK 394
>gi|30262550|ref|NP_844927.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Ames]
gi|47527848|ref|YP_019197.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|165869045|ref|ZP_02213705.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0488]
gi|167632709|ref|ZP_02391036.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0442]
gi|167637949|ref|ZP_02396228.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0193]
gi|170685562|ref|ZP_02876786.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0465]
gi|170704398|ref|ZP_02894864.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0389]
gi|177649431|ref|ZP_02932433.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0174]
gi|190565326|ref|ZP_03018246.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis Tsiankovskii-I]
gi|196036722|ref|ZP_03104114.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
W]
gi|227814631|ref|YP_002814640.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. CDC 684]
gi|228927615|ref|ZP_04090667.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228946196|ref|ZP_04108529.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229122097|ref|ZP_04251313.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
gi|229603255|ref|YP_002866873.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0248]
gi|254685126|ref|ZP_05148986.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. CNEVA-9066]
gi|254722535|ref|ZP_05184323.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A1055]
gi|254737577|ref|ZP_05195280.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Western North America USA6153]
gi|254743240|ref|ZP_05200925.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Kruger B]
gi|254751892|ref|ZP_05203929.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Vollum]
gi|254760412|ref|ZP_05212436.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Australia 94]
gi|30257182|gb|AAP26413.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
Ames]
gi|47502996|gb|AAT31672.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|164715771|gb|EDR21288.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0488]
gi|167514498|gb|EDR89865.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0193]
gi|167533007|gb|EDR95643.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0442]
gi|170130199|gb|EDS99060.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0389]
gi|170670922|gb|EDT21661.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0465]
gi|172084505|gb|EDT69563.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0174]
gi|190563353|gb|EDV17318.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis Tsiankovskii-I]
gi|195990686|gb|EDX54662.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
W]
gi|227004352|gb|ACP14095.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
CDC 684]
gi|228661440|gb|EEL17064.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
gi|228813487|gb|EEM59775.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228832095|gb|EEM77680.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229267663|gb|ACQ49300.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0248]
Length = 338
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + L+D N+G V+ + ++ A+L+KLMT Y
Sbjct: 11 LLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEENSIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V L + L + IS S T+ + L L++ N +A+
Sbjct: 71 IVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRSTLAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E F Q MN +K L LS NA G+ + TTA ++ L+ R+ T
Sbjct: 131 AEHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNGTNKLSTTTAIEVGKLATRLVT 190
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ + K N + G DG++T F+ S ++ V++
Sbjct: 191 DFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A +GD LI+VIL A + N+ + LL GF
Sbjct: 251 AKRGDTRLISVILDADNENSTFIETKKLLQYGFD 284
>gi|218903688|ref|YP_002451522.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH820]
gi|228915143|ref|ZP_04078740.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228933848|ref|ZP_04096693.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|218538327|gb|ACK90725.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH820]
gi|228825804|gb|EEM71592.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228844572|gb|EEM89626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 338
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 72/274 (26%), Positives = 119/274 (43%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + L+D N+G V+ + ++ A+L+KLMT Y
Sbjct: 11 LLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEENSIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V L + L + IS S T+ + L L++ N +A+
Sbjct: 71 IVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRSTLAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E F Q MN +K L LS NA G+ + TTA ++ L+ R+ T
Sbjct: 131 AEHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNGTNKLSTTTAIEVGKLATRLVT 190
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ + K N + G DG++T F+ S ++ V++
Sbjct: 191 DFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A +GD LI+VIL A + N+ + LL GF
Sbjct: 251 AKRGDTRLISVILDADNENSTFIETKKLLQYGFN 284
>gi|227486588|ref|ZP_03916904.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus
lactolyticus ATCC 51172]
gi|227235406|gb|EEI85421.1| serine family D-Ala-D-Ala carboxypeptidase [Anaerococcus
lactolyticus ATCC 51172]
Length = 402
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 84/356 (23%), Positives = 152/356 (42%), Gaps = 27/356 (7%)
Query: 1 MR---QFLVIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPW 51
M+ + +I A + + L+ + + Y + + G V E D P
Sbjct: 1 MKYKYKLASLIMAAFIFLMPISLAAGQNKIVGLDENVKAYIIANEENGEVYYEKNADEPR 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNAL 108
ASL+KLMT V + L T + K A + + S+ K+G T T+D L
Sbjct: 61 AMASLSKLMTFLVTMDAIHSGALKLDTKVKADKEAEKLTSWEYSSLGVKEGETYTVDELL 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG---VVQHGHYT 165
K LI S ND A +A ++ +E F + MN +K L L + + N+ G + + +
Sbjct: 121 KGLIAVSGNDCAYLLANTVSVSEPAFAREMNEKAKELDLKSQVYYNSSGVQTEDGYQNTS 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGFTCA 223
+ARD+ LS I +P+ + Y I+ ++ G+ + G DG+KTG T
Sbjct: 181 SARDLFKLSQYILKTYPEILDYAAIREIKDPGRDIDKKSTIPLMDEIKGVDGLKTGTTDE 240
Query: 224 SGFNIVASAIQ------GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
+G+ +V + D I V++GA ++TRNKV + L+ + R ++ +
Sbjct: 241 AGYCLVTTVDMSKLDSNDDFRSIGVVMGADQKDTRNKVMSDLIYYVSKYFSTRVVLDTNV 300
Query: 278 KDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
++++ + I E++ KE N + D ++ + E + +
Sbjct: 301 PIKSLKDITVKQGYIDLYPKEDIKMIIKEGENPTIKYNIKDDIKAPIKENEDLGEV 356
>gi|225864539|ref|YP_002749917.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
03BB102]
gi|229184786|ref|ZP_04311979.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
gi|225790611|gb|ACO30828.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102]
gi|228598690|gb|EEK56317.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
Length = 338
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 73/281 (25%), Positives = 123/281 (43%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ +++ + F + L+D N+G V+ + D A+L
Sbjct: 4 LKKFTILLLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVFKKNEDISIQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+ L E K L + IS S T+ + L L +
Sbjct: 64 SKLMTEYIAMEQLHEGKIQLDELVKISNEVFRAETSPIQVTSKDKTTVRDLLHALFLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGH---YTTARDMAI 172
N A+A+AE + E F MN +K L LS NA G+ + TTA D+
Sbjct: 124 NRSALALAEHIAGNEDNFTILMNEKAKQLKLSQPSPFLNATGMNNDTNKQSNTTAIDVGK 183
Query: 173 LSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCAS 224
L+ ++ DFP ++ ++ K K NTN + G DG++T F+
Sbjct: 184 LATQLVKDFPNVLNITKLTSYQFTFKDSKVFNTNKMIYSLNKNINLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A +GD LI+VIL + + N+ + LL GF
Sbjct: 244 NYSFVSTAQRGDTRLISVILDSNEENSTFIETKKLLQYGFD 284
>gi|256848581|ref|ZP_05554022.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus
coleohominis 101-4-CHN]
gi|256714633|gb|EEU29613.1| D-alanyl-D-alanine carboxypeptidase dacA [Lactobacillus
coleohominis 101-4-CHN]
Length = 400
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 73/368 (19%), Positives = 142/368 (38%), Gaps = 35/368 (9%)
Query: 1 MRQFLVIIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
++Q LV + +++ ++ A T +D TG V+ + D AS
Sbjct: 4 IKQVLVSFIITLVTVCGVCFNRLPIAHAATVDAHAAFAIDAQTGQVLYNHNGDQRLAVAS 63
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNALKLL 111
++KL+T V+ + + K +T + I+ K ++ SN K T+ +
Sbjct: 64 MSKLLTVAVIENEISSGKLKWSTKVKITSAEAKLSTASGYSNVPLKASKQYTVKQLTQAA 123
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------- 162
++KS + +A+ + + ++FVQ M +K +GLS N G+
Sbjct: 124 LIKSGDAATIALTRAQGRNTQQFVQQMGTMAKRIGLSNYRLYNGVGLENGDMASFKLPKT 183
Query: 163 -----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL------ 211
+ TA+D+A ++ + ++P + + + L GK YPN+N +
Sbjct: 184 AKAAENQMTAQDVAKVARYLIQNYPAVLKITKQRTLRWDGKDYPNSNELLPGNAAAPQKV 243
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR- 270
DG+KTG + +G +V++ +I V++ A N R + L F N
Sbjct: 244 KVDGLKTGTSDKAGQCLVSTGTYQGHRIITVVMHA---NNRFSQTKVLYEEVFANWQPVR 300
Query: 271 -KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE-AKDKESHFIDFEKITL 328
K+ + Q+ + V Q + + KD + +K T
Sbjct: 301 GKQRQTVSVSHGQRKNVQVETKHAVTVWQPQHQPVKAQFIADAHVKDGQKIKAPLKKNTR 360
Query: 329 LKNKITKK 336
+ +K
Sbjct: 361 VGKLQYRK 368
>gi|317133056|ref|YP_004092370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
harbinense YUAN-3]
gi|315471035|gb|ADU27639.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ethanoligenens
harbinense YUAN-3]
Length = 389
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 81/340 (23%), Positives = 136/340 (40%), Gaps = 20/340 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R++ +A +L + A Y L++ TG VIA AS TK+MT
Sbjct: 3 RKWAACLAAVLLFVTVGPSARAAAVSARAYALVEQTTGRVIAGADMGERLPMASTTKIMT 62
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + L T+ A S+ + ++TL + L+++S ND A
Sbjct: 63 GLLACESGE-----LDKTFTVPPEALTVEGSSMGLQPDESITLRALVYGLLLESGNDAAN 117
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IA L + + F MN ++ L L+ THF N G+ GHYTTA D+A L
Sbjct: 118 SIAMLLGGSVEGFAAQMNAKARALHLNDTHFANPSGLGADGHYTTALDLARLGAY-AMKN 176
Query: 182 PQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
P + + + + N N +G++ G G+KTGFT SG +V+ A +G
Sbjct: 177 PDFAQIVGTRRATVSYNGIANARTLINHNRLLGSYDGEIGIKTGFTKKSGRCLVSCARRG 236
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK-----DFYQQNLSNEVP 290
+L+ L D + A+LL GF R + ++ ++
Sbjct: 237 GVTLVLATLNDPDD---WRDHAALLDQGFSELQARPLLAAPVERRVRVTDGARDTVAVRC 293
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ + +E Q++ E+ +KI L+
Sbjct: 294 DPAVSAALRAEETGQVAMQVRLPGKVEAPVRAGQKIGELR 333
>gi|187779942|ref|ZP_02996415.1| hypothetical protein CLOSPO_03538 [Clostridium sporogenes ATCC
15579]
gi|187773567|gb|EDU37369.1| hypothetical protein CLOSPO_03538 [Clostridium sporogenes ATCC
15579]
Length = 424
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 74/339 (21%), Positives = 132/339 (38%), Gaps = 15/339 (4%)
Query: 5 LVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
L+I + SN+F + +D TG +I D PAS TK +T
Sbjct: 11 LLIFIFTLTSNVFAAGDSNTEPPIIYGKTAMTIDVETGEIIYAKNIDKRMYPASTTKYLT 70
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A ++ + + T S+ + G T+ +N + L++ S ND A
Sbjct: 71 ALLLAENKGKNDNIPYTATAKSQPPYSMNINLHPINIGETIKAENVMDGLLLFSGNDTAY 130
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
I ++L K F MN + L L THF+ +G+ HYTTA D++I+S +
Sbjct: 131 MIGDALAGNSKNFENMMNKKIQELNLKNTHFVTPNGLHNPNHYTTAYDLSIISRAALKNP 190
Query: 182 PQY----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
Y I + N+N +G G KTG+T A+G +V + D+
Sbjct: 191 WVYQSSNKKESSIVTSKGTKMTVENSNKLLGK-DGCVAGKTGYTDAAGRCLVTLFNRDDR 249
Query: 238 SLIAVILGA---LDRNTRNKVSASLLSMGFYNKTD---RKKINYIIKDFYQQNLSNEVPN 291
++ V++G+ + + ++ + K +K + L P+
Sbjct: 250 KILGVVMGSVYDAKDSFVFEDMKKIIDWSYNIKPSTLYKKDSALKTETVTYNPLKFIGPS 309
Query: 292 ISEEVCTTQKEIIN-YNTQMKEAKDKESHFIDFEKITLL 329
++ +V KE Y ++ + + ++ ID L
Sbjct: 310 VTVDVPVILKEDATYYKNEVNDKETNKTINIDNTSYAAL 348
>gi|213853083|ref|ZP_03382615.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
Length = 222
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 98/207 (47%), Gaps = 6/207 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 76 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 135
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDMA+L +
Sbjct: 136 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALI 195
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW 205
D P + K + PN N
Sbjct: 196 HDVPDEYAIHKEKEFTFNNIRQPNRNR 222
>gi|167751174|ref|ZP_02423301.1| hypothetical protein EUBSIR_02160 [Eubacterium siraeum DSM 15702]
gi|167655889|gb|EDS00019.1| hypothetical protein EUBSIR_02160 [Eubacterium siraeum DSM 15702]
Length = 466
Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats.
Identities = 76/386 (19%), Positives = 141/386 (36%), Gaps = 52/386 (13%)
Query: 1 MRQFL----VIIAMAMLSNIFPFLSIAET-------------NKLPYYTLLDTNTGHVIA 43
M++ L ++ AML + AE +++T+TG V+
Sbjct: 1 MKKILRFASALLCGAMLLCSLSVTAFAENDDEVYDFDPNTDKIYSEAVYMVNTDTGDVVF 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM------LTTPITISKNASEYPPSNSTFK 97
+ PAS TK+MT + L E ++ + PSN+ +
Sbjct: 61 KKNESKKMYPASTTKIMTCIIALEHLSEGALSKKVEVPYDCFNDFYEDPNYSDPSNAAIE 120
Query: 98 K-GSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNA 155
+T + L L++ SA + A +A ++ + KF+ MN +K LG + T+F+NA
Sbjct: 121 PLQDNLTYKDCLYALMLPSACEAANILAYNIGGGSITKFIGMMNEKAKELGCTGTNFVNA 180
Query: 156 HGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-------- 207
HG+ +YTTA D+ ++ FP + E+ + +++
Sbjct: 181 HGLHNDNNYTTAEDLYKMTKYAYDKFPLFKKITSTYEYEMPKNDANPSGYSIYSTISLLR 240
Query: 208 ----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-------NTRNK-- 254
+ A G KTG T +G + SA + + I V LGA + +
Sbjct: 241 PGSVYEYEYAYGTKTGTTDEAGRCL-VSAAKNQYNYILVTLGAPVKDKNGEYYDDWYSMI 299
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQ-----NLSNEVPNISEEVCTTQKEIINYNTQ 309
+ +L F N +N + + + ++ + + + + +
Sbjct: 300 DALNLYKWAFTNFEMTTVVNKDEQITEVKVEMGESATHVILTPESDYTALMPKSVKESGV 359
Query: 310 MKEAKDKESHFIDFEKITLLKNKITK 335
K K ES +K +L K
Sbjct: 360 QKVFKAYESVQAPVKKGDILGVMDVK 385
>gi|228477822|ref|ZP_04062450.1| D-alanyl-D-alanine carboxypeptidase DacA [Streptococcus salivarius
SK126]
gi|228250514|gb|EEK09728.1| D-alanyl-D-alanine carboxypeptidase DacA [Streptococcus salivarius
SK126]
Length = 432
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 67/369 (18%), Positives = 135/369 (36%), Gaps = 40/369 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ + ++ +L + A + ++ TG ++ E
Sbjct: 15 MKKLITLMMTFLLCLGSVAPAFAADKKKGYDAAAKHAIAVEATTGKILYEKDATTSTGIG 74
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLL 111
S+TKL+TAY+V+ + + + + IS E ++ T+ L
Sbjct: 75 SITKLLTAYMVYKAVDQGDLKWNSKVEISDYPFELTVSAGVSNIPLDARKYTVKQLLDAT 134
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------ 159
++ SAN ++A+AE + TE KFV M K+ G++ +NA G+
Sbjct: 135 LISSANSASIALAEEIGGTESKFVDMMKAQLKDWGITDAKIVNASGLNNSYLGDNIYPGS 194
Query: 160 --QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA----VGTFLG 212
+ +A+D+AI++ + ++P+ + + + K N+ G
Sbjct: 195 KSDEENTMSAKDVAIIAQHVVKEYPEILDITKKTEADFDGVNKLKTFNYMLKGQPSYRKG 254
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKT 268
DG+KTG T +G + VA + + S+I VI+ A + +T R + LL+ Y+
Sbjct: 255 VDGLKTGTTDLAGASFVAHSNESGMSIITVIMNADNTDTDDYARFTATNDLLNYVVYHWE 314
Query: 269 DRKKINYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
+ + QK N + +K ++
Sbjct: 315 SKTIAKKGQAIGKSQAHVIDGKSKQVTAVAKSDFNIIQKIDANNSKHIKVTTNQV--QAP 372
Query: 323 FEKITLLKN 331
+ +
Sbjct: 373 VKPGDKVGT 381
>gi|262047823|ref|ZP_06020773.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
MV-3A-US]
gi|260571880|gb|EEX28451.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus crispatus
MV-3A-US]
Length = 433
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 63/352 (17%), Positives = 129/352 (36%), Gaps = 35/352 (9%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + + +D+++G ++ AS+TKL+T Y+ +K K
Sbjct: 36 TTSSYQADQVKLNVKSAIAIDSDSGQILYAKNATKTLPIASMTKLVTVYLTLQAIKNHKL 95
Query: 75 MLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ I K A+ SN K G + T+ + +++SAN A+ + +++ +
Sbjct: 96 SWDQKVKPTAPIVKVANNAEYSNVPLKLGHSYTIRQLYQATLIESANGAAMLLGQTIAGS 155
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWR 176
+K F+ M K G+ A G+ + +A+DMAI+ +
Sbjct: 156 QKAFIDQMRAQVKKWGIEDAKIYTACGLPNGNLGKDAYPGVNKNAENTMSAKDMAIVGQK 215
Query: 177 IKTDFPQYMHYFQIKGLEI----KGKKYPNTNWAVG---TFLG---ADGMKTGFTCASGF 226
+ + FP+ + ++ L K N NW + + DG+KTG T A+G
Sbjct: 216 LISAFPEVLETTRLAHLNFKDAGHVTKMANFNWMLKGLSQYDQAYPVDGLKTGTTDAAGA 275
Query: 227 NIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+ + LI V++GA R + L++ F + +
Sbjct: 276 CFIGTVQHNGARLITVVMGARHRDGTDPARFMQTKKLMNFIFTKYRPVTMTAGSQMNGAK 335
Query: 283 QNLSNEVPNISEEVCTTQKEIIN---YNTQMKEAKDKESHFIDFEKITLLKN 331
+ N + + K I + + +K++ +K + +
Sbjct: 336 TIKVTDGDNATTNLGLKNKTTIWDPADGKTLVASLNKKTVEAPIKKDQTIGD 387
>gi|257054601|ref|YP_003132433.1| D-alanyl-D-alanine carboxypeptidase [Saccharomonospora viridis DSM
43017]
gi|256584473|gb|ACU95606.1| D-alanyl-D-alanine carboxypeptidase [Saccharomonospora viridis DSM
43017]
Length = 410
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 104/259 (40%), Gaps = 14/259 (5%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ E + + D +TG+V+A P + PASL K + + + +
Sbjct: 84 IVRPADSPEPPEDITAAAWLVQDLDTGYVLAAKNPHGRYRPASLIK-----TLLALVVLE 138
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ + +K + + +G T+D + L++ S ND+A A+A +L
Sbjct: 139 ELPPDHVVVATKEDANQECTCVGLVEGGEYTVDQLIHALLMHSGNDVAHALATALGGV-D 197
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
V+ MN ++ LG + T G+ G T+A DM+++ P Y K
Sbjct: 198 AAVEKMNALAEWLGAADTRAATPSGLDGPGMMTSAYDMSLIFRY-AMQQPAYAEAVGTKH 256
Query: 193 LEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ N N ++ G G KTGFT + V +A + + + V+L A
Sbjct: 257 IDFPGGPGEPDFPVYNDNPLWASYEGFLGGKTGFTDDARHTYVGAAERDGRRIAVVLLQA 316
Query: 247 LDRNTR-NKVSASLLSMGF 264
+ R + + LL GF
Sbjct: 317 EQQPIRVAEQAQRLLDYGF 335
>gi|254387230|ref|ZP_05002494.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
gi|194346039|gb|EDX27005.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
Length = 424
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 49/289 (16%), Positives = 104/289 (35%), Gaps = 20/289 (6%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ E+ + + D +G V+A + PAS K++ A V L + + T
Sbjct: 79 APALPESLTGRSWIVADAGSGEVLAAHNAHWRLPPASTMKMLFADTVLPTLPKDQVHKVT 138
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+S S+ K + L L + + + AV + ++ +K V+ M
Sbjct: 139 EEEMSD---VGQGSSLVGVKEDYEYSVHDLWLGVFLRSGNDAVHVLSAMNGGIEKTVKDM 195
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-- 196
++ L TH ++ G ++A D+ +++ + +
Sbjct: 196 QAHAEELQALDTHVVSPDGYDAPEQVSSAYDLTLIARSGLQKQDFKEYCGTVSAQFPGSQ 255
Query: 197 -------GKKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ NTN + + G G+K G T +G +A + ++L+ +
Sbjct: 256 EAGKARDSFEIQNTNRLMTGAGGLAPYKGIAGVKNGNTTMAGSTFTGAAQRDGRTLLVTV 315
Query: 244 LGALDR--NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
+ N+ + +A LL GF K + ++ + S+ P
Sbjct: 316 MNPNSGGLNSVYEETADLLDWGFAAAGKVKPVGELVSPKSEDGTSHGSP 364
>gi|328954547|ref|YP_004371881.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobacca
acetoxidans DSM 11109]
gi|328454871|gb|AEB10700.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Desulfobacca
acetoxidans DSM 11109]
Length = 350
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 69/332 (20%), Positives = 127/332 (38%), Gaps = 17/332 (5%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+ ++ + ++ + Y ++D +TG +++ PAS K+ TA V
Sbjct: 8 IWVVCLMVVVGGRAAAETDNPVRAIAYCIMDADTGTILSAQNHQMMLPPASTLKVGTALV 67
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
L + +S NA++ P S K G +++ L +++ SAND A A+
Sbjct: 68 AI-----NTLQLQDKVPVSVNAAQAPASKIYLKPGEIYNVNDMLYAILLASANDAARALG 122
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + +E +F + M + +G T+F A G+ G Y+TA D+A + + +
Sbjct: 123 ERVSGSEDRFARFMTKQLREMGAYRTNFETASGLPSEGQYSTAYDLAFIFRKAMQNPTLA 182
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
GK+ N N + T A KTG+T AS V GD+ +I ++
Sbjct: 183 RIMNTKTFTLQDGKEVYNHNRFLFTTEYAVAGKTGYTRASKHTYVGLFRNGDKRIIVSMM 242
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
G+ + +L+ GF +++ ++ + + K
Sbjct: 243 GSQGK---WADLRTLIEKGFAECGAPIAKLPPVEESLRRPGTYARASA--------KSRT 291
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ K K K T + I KK
Sbjct: 292 RKYVKGKTPKRKV-LSAGVVSGTGTQTSIKKK 322
>gi|257440394|ref|ZP_05616149.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium
prausnitzii A2-165]
gi|257197143|gb|EEU95427.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium
prausnitzii A2-165]
Length = 439
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/350 (20%), Positives = 127/350 (36%), Gaps = 25/350 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL-----PYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ + ++ +L+ + F A Y ++D +TG V+A+ + +PAS
Sbjct: 1 MKKHIAMLCAVLLTALAAFAPGAAAAGPALTATEAYCIIDADTGLVLAQQNMNEELHPAS 60
Query: 56 LTKLMTAYVVFS--FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
+TK+MT + K LT + + S+ ++G + L +AL ++
Sbjct: 61 ITKVMTLGLACEKAQGKWDNVKLTVSHEDVYSLAGTDSSHIALQEGEEVPLTDALYATMM 120
Query: 114 KSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
SAND A +AE + + V MN +K LGL THF N HG+ HYT+ DMA
Sbjct: 121 ASANDGANLLAEYFGGGSIEGGVAAMNAQAKELGLEHTHFANPHGISDEDHYTSCYDMAQ 180
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV------------GTFLGADGMKTGF 220
+ T + + + + G K G+
Sbjct: 181 ILRWALTQPGFETLFTRNEMYTMGPTNVQPVTRYFHQQDKMRVGSSRYYIPAILGSKIGY 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI---- 276
T + ++ V A Q LI V + + + + +LL F T +I
Sbjct: 241 TNIARYSYVCLAEQNGVRLICVTMQSQIKTDKYNDVRTLLDDAFARYTGYTEIPAQGVTG 300
Query: 277 -IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
++ + V V + + + E + + +
Sbjct: 301 ELEVAGGGSTLGTVTVSDPGVKLLLADGLTAADVSVTLELPERYLLGVDP 350
>gi|259046641|ref|ZP_05737042.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
ATCC 49175]
gi|259036806|gb|EEW38061.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
ATCC 49175]
Length = 500
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/331 (21%), Positives = 137/331 (41%), Gaps = 35/331 (10%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L+D TG ++ ++ D PW+PAS TKLMTAY+V+ +K K L T IT ++
Sbjct: 91 ESAILVDAETGQILYGDHIDKPWDPASTTKLMTAYLVYEAIKAGKITLDTKITATELDRA 150
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
SN+ + G + + L L++ S+N V ++ ++ ++ +++++ MN+ +K
Sbjct: 151 ISTIDDISNNQIRAGIEYPVRDLLYLMMYPSSNVATVMLSHAISQSNEEYIKMMNDKAKE 210
Query: 145 LGLSATHFMNA--------------HGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
LG++ + F N GV + TTARD+A LS+ ++P+++ +
Sbjct: 211 LGMTNSKFYNPSGAVVSAFRGLYTVEGVPDEYNQTTARDLATLSYYFLKNYPEFLEITRE 270
Query: 191 KGLEIK-----GKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + + N + DG KTG + + N V +A + + +I
Sbjct: 271 PAVTTMEGTVVEETFYTLNQLASGMNQGYFHVDGFKTGSSPNAALNHVITAKEKGRRVIE 330
Query: 242 VILGALDRNT-------RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
V++G + R + ++L F + + + + Q + E +I
Sbjct: 331 VLMGVGSWSDYNTSVYYRAQFGNAILEKAFTEYHEETVLKAGVHEIDGQEIKVE-KDIKA 389
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
K ++ K
Sbjct: 390 ITKGDSKPTYKLVGDEIIVENTFPTLTKAIK 420
>gi|117927602|ref|YP_872153.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidothermus
cellulolyticus 11B]
gi|117648065|gb|ABK52167.1| Serine-type D-Ala-D-Ala carboxypeptidase [Acidothermus
cellulolyticus 11B]
Length = 465
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 51/283 (18%), Positives = 106/283 (37%), Gaps = 12/283 (4%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++++ L + + D +TG V+A PAS K++TA +
Sbjct: 100 VVTSTGENLPPLPPTTATSFIVADADTGEVLAAKDAHRQLAPASTLKVLTAITLIP---- 155
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ + + +A + G T ++ + L +++ SAND AVA+A++
Sbjct: 156 -RLDPAAGVVVQPDAVRVDGTKVGVVAGQTYSVRDLLTAMLMMSANDAAVALADANGGL- 213
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW----RIKTDFPQYMHY 187
++ + MN + L T G+ ++A D+A++ +
Sbjct: 214 EQTLAEMNAEAAWLNARDTVAKTPDGLDAPNQASSAYDLALMFRAGLAIPAFRTYLSITR 273
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
Q + + + + T+ G G K G+T A+ + V +A + ++I ++
Sbjct: 274 MQFPAPKGASYQIQTHDRLLLTYPGMIGGKNGYTVAAQASYVGAARRNGHTIIVAVM--R 331
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
D+ L GF I ++ ++ S E P
Sbjct: 332 DQPNFWDEVKGLFDWGFAVDGTATPIGTLVPPGPLKSPSAEAP 374
>gi|330500999|ref|YP_004377868.1| D-alanyl-D-alanine endopeptidase [Pseudomonas mendocina NK-01]
gi|328915285|gb|AEB56116.1| D-alanyl-D-alanine endopeptidase [Pseudomonas mendocina NK-01]
Length = 293
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 61/265 (23%), Positives = 105/265 (39%), Gaps = 11/265 (4%)
Query: 5 LVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L++ ++SN+ + + L+D TG + + PD AS+TKLMTA
Sbjct: 3 LLLCGSLVVSNLQAAPAQPKQELAAGSALLIDLKTGQELYSSNPDLRLPVASVTKLMTAM 62
Query: 64 VVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV L + I+ ++ E S + GS +T + L L ++ S N A +
Sbjct: 63 VVLDAK----LPLDEVLPITIRDTQEMQGVFSRVRIGSEITRRDMLHLALMSSENRAAAS 118
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A FV MN ++ LG+ +HF+ G+ + T ++ +
Sbjct: 119 LAHHYPGGHAAFVAAMNAKARALGMHNSHFVEPTGLSEQNVATARDLALMVKAANQYPLI 178
Query: 183 QYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQ 237
+ + Y NTN V + KTGFT A+G +V + ++
Sbjct: 179 HQFSTDSEATVAFRKPNYTLGFRNTNALVRKADWNINLSKTGFTNAAGRCLVMATTIANR 238
Query: 238 SLIAVILGALDRNTRNKVSASLLSM 262
+ V+LGA + T + L
Sbjct: 239 PVAFVVLGAFGKYTHMADANRLKRW 263
>gi|254776738|ref|ZP_05218254.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 367
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 55/259 (21%), Positives = 99/259 (38%), Gaps = 12/259 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + + D ++G VIA P PAS+ K++ A
Sbjct: 39 IVAAPNTPPLPGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAI-----N 93
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + + + + ++G T++ L L++ S ND A A+A L ++
Sbjct: 94 TLNLNKAVPGTADDAAAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQ 153
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-----YMHY 187
+ +N + LG T G+ G T+A D+ + + +
Sbjct: 154 AL-EKINVLAAKLGGQDTRVATPSGLDAPGMSTSAYDIGLFYRYAWQNPTFADIVATRTF 212
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GA 246
+ G + N N + + GA G KTG+T +G V +A + L+AV+L G
Sbjct: 213 DFPGHGDHPGYELENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLLHGT 272
Query: 247 LDRNTRNKVSASLLSMGFY 265
+ +A LL GF
Sbjct: 273 RQPIAPWEQAAHLLDYGFA 291
>gi|118466287|ref|YP_883443.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104]
gi|118167574|gb|ABK68471.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104]
Length = 419
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 55/259 (21%), Positives = 99/259 (38%), Gaps = 12/259 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + + D ++G VIA P PAS+ K++ A
Sbjct: 91 IVAAPNTPPLPGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAI-----N 145
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + + + + ++G T++ L L++ S ND A A+A L ++
Sbjct: 146 TLNLNKAVPGTADDAAAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQ 205
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-----YMHY 187
+ +N + LG T G+ G T+A D+ + + +
Sbjct: 206 AL-EKINVLAAKLGGQDTRVATPSGLDAPGMSTSAYDIGLFYRYAWQNPTFADIVATRTF 264
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GA 246
+ G + N N + + GA G KTG+T +G V +A + L+AV+L G
Sbjct: 265 DFPGHGDHPGYELENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLLHGT 324
Query: 247 LDRNTRNKVSASLLSMGFY 265
+ +A LL GF
Sbjct: 325 RQPIAPWEQAAHLLDYGFA 343
>gi|41409546|ref|NP_962382.1| hypothetical protein MAP3448 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41398377|gb|AAS05998.1| hypothetical protein MAP_3448 [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 394
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 55/259 (21%), Positives = 99/259 (38%), Gaps = 12/259 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + + D ++G VIA P PAS+ K++ A
Sbjct: 66 IVAAPNTPPLPGDVSAEAWLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMAAI-----N 120
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + + + + ++G T++ L L++ S ND A A+A L ++
Sbjct: 121 TLNLNKAVPGTADDAAAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQ 180
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-----YMHY 187
+ +N + LG T G+ G T+A D+ + + +
Sbjct: 181 AL-EKINVLAAKLGGQDTRVATPSGLDAPGMSTSAYDIGLFYRYAWQNPTFADIVATRTF 239
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GA 246
+ G + N N + + GA G KTG+T +G V +A + L+AV+L G
Sbjct: 240 DFPGHGDHPGYELENDNQLLYKYPGALGGKTGYTDDAGQTFVGAANHDGRRLVAVLLHGT 299
Query: 247 LDRNTRNKVSASLLSMGFY 265
+ +A LL GF
Sbjct: 300 RQPIAPWEQAAHLLDYGFA 318
>gi|225573149|ref|ZP_03781904.1| hypothetical protein RUMHYD_01340 [Blautia hydrogenotrophica DSM
10507]
gi|225039504|gb|EEG49750.1| hypothetical protein RUMHYD_01340 [Blautia hydrogenotrophica DSM
10507]
Length = 412
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 64/316 (20%), Positives = 115/316 (36%), Gaps = 23/316 (7%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
++D T V+ E + PAS+TKL+TA VV + L + S
Sbjct: 48 KVSSECGLVMDVGTQTVLYEKNGEELHYPASITKLLTALVVMERCE-----LDETVIFSH 102
Query: 85 NASEYP----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+A +N F+ G +T+++ L +I++S+N A A+AE + + FV MN
Sbjct: 103 DAVYEVESGSGNNQGFEAGDKLTVEDCLYAMILESSNPAANALAEHTSGSLEAFVNEMNQ 162
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
++ LG ++F N G+ TTA DM ++S + +
Sbjct: 163 KAEELGCENSNFENPSGLNDEAQKTTAYDMGLISSEVFKNDTLKEICSAETYQLPPTLNQ 222
Query: 201 PNTNWAVGTFLGADG------------MKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+G KTG+T +G +V A + D+ L++V++
Sbjct: 223 TEGYLLHMEHRLVNGEEQKDDRWDLVAGKTGYTTMAGNTLVTYAEEDDKQLVSVVM--QS 280
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
T + + +LL+ GF N + Q ++ T +
Sbjct: 281 EQTHYEDTNNLLNYGFDNYERLVVAEREKQAEIQAAAIAAAAAPTDTGEKTSQVTQTAEK 340
Query: 309 QMKEAKDKESHFIDFE 324
+ A +
Sbjct: 341 SLDTALILKFAVAAGV 356
>gi|302874922|ref|YP_003843555.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulovorans 743B]
gi|307690459|ref|ZP_07632905.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cellulovorans
743B]
gi|302577779|gb|ADL51791.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulovorans 743B]
Length = 349
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 73/339 (21%), Positives = 134/339 (39%), Gaps = 14/339 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ ++ + +SN + +D + V+ E AS TK+MT+
Sbjct: 11 LIAVMILISISNNITAYGKVLSIDARAAIAMDVKSKRVLYEKNSVSLIPMASTTKIMTSL 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
V ++ L ITISK A+ S + G +TL L L+++S ND A+AI
Sbjct: 71 VALTY-----GNLDQEITISKKAAAIRGSTVNYMAGEKVTLRELLYGLMLRSGNDAAIAI 125
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + F+ MN + +G + +HF + HG+ + HYTT D+AI++ + +
Sbjct: 126 AEGIAGDVDSFLVLMNEYANLIGATNSHFESPHGLDSNQHYTTTYDLAIITSKAMENRTF 185
Query: 184 YMHYFQ---IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
KG + Y N N + A G+KTG+T +G +V+S ++
Sbjct: 186 REIVGCRSIEKGASGFTRGYSNINKILFLHGDATGVKTGYTGQAGKCLVSSFNYDGNDIV 245
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN-ISEEVCTT 299
++L N R + + + N +K + ++ + E++
Sbjct: 246 VIVLNC---NPRWGETLKIYNHVKDNYEYKKLCSKEDDIAIINTKKSKYKLFLEEDMILP 302
Query: 300 QKEIINYNTQMKEAKDKESHF--IDFEKITLLKNKITKK 336
K N+ + + K + ++ I K
Sbjct: 303 IKRNANFALNVVKPKYVKKDTGYYGRIEVIEEGKMIFNK 341
>gi|302523506|ref|ZP_07275848.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
gi|302432401|gb|EFL04217.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
Length = 315
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/263 (26%), Positives = 111/263 (42%), Gaps = 20/263 (7%)
Query: 22 IAETNKLPYYTLLDTNTG----HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
A K + LLD G + A D AS TK+MTA VV + + +T
Sbjct: 55 AAPAIKAEHAFLLDARDGSQERELWAGAKADESVPMASTTKIMTAIVVLKHPEWLERQIT 114
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK------TE 131
E S + + G T+T L +++ S D A A+A++
Sbjct: 115 VKQEYRDYVQEVGASTADLQTGDTLTARQLLHAMLIPSGADAARALADTFGNGDTEEARI 174
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
F+ MN ++ LGL THF + G+ Q +++TARD+A L R +
Sbjct: 175 SDFIAQMNAEAQQLGLKGTHFDSVDGISQGNNHSTARDLAKLGQRAMLQPVFAEVVKNTQ 234
Query: 192 GLE--------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + NTN +GT+ GA G+KTG G+ +V +A + +++L+ VI
Sbjct: 235 YKTEAPAANGHTRYYTWNNTNELLGTYDGALGVKTGSGPEDGYCVVFAAERDNRTLVGVI 294
Query: 244 LGALDRNTRNKVSASLLSMGFYN 266
LG R + +L GF +
Sbjct: 295 LGDDTG--RFDDATKVLDWGFAH 315
>gi|163813991|ref|ZP_02205384.1| hypothetical protein COPEUT_00143 [Coprococcus eutactus ATCC 27759]
gi|158450685|gb|EDP27680.1| hypothetical protein COPEUT_00143 [Coprococcus eutactus ATCC 27759]
Length = 425
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/332 (21%), Positives = 129/332 (38%), Gaps = 32/332 (9%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D TG ++ E D AS TK++T + L + +S
Sbjct: 61 QLYAKNAVLIDGETGDILYEKNADAHRPNASTTKILTCILALEC-----GNLEDTVAVSS 115
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A++ P ++G + TL++ L ++++S ND AV IAE + + + F MN ++
Sbjct: 116 YAAKQPEVRLGAQEGESYTLEDMLYAMMLESYNDTAVMIAEHIGGSMEVFADMMNRKARE 175
Query: 145 LGLSATHFMNAHGVVQH----GHYTTARDMAILSWRIK---TDFPQYMHYFQIKGLEI-- 195
+G +T+F+ +G+ GH T+A D+A + + ++ Q
Sbjct: 176 IGCHSTYFITPNGLDAQDESGGHGTSADDLARIMRYCILVSPERDMFLKITQSSSHTFSE 235
Query: 196 ----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ N N + A KTGFTC +G+ V +A + + I +LG
Sbjct: 236 KSGSRTFSCVNHNAFLNMSSEALSGKTGFTCDAGYCYVGAANKNGHTYIWSLLGCGWPGN 295
Query: 252 ---RNKVSASLLSMGFYNKTDRKK---------INYIIKDFYQQNL--SNEVPNISEEVC 297
+ K S +LLS + + +NY K N+ + I E
Sbjct: 296 KTYKWKDSKTLLSYAGEHAQYTELSAPESPNVTVNYSSKSAKPGNICTKCNLSGIVAEAG 355
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
T+ ++ + A ++ E + L
Sbjct: 356 DTEGKVDDIRYVYNVADSVKAPVYTGEVVGSL 387
>gi|291556702|emb|CBL33819.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
Length = 466
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 76/386 (19%), Positives = 141/386 (36%), Gaps = 52/386 (13%)
Query: 1 MRQFL----VIIAMAMLSNIFPFLSIAET-------------NKLPYYTLLDTNTGHVIA 43
M++ L ++ AML + AE +++T+TG V+
Sbjct: 1 MKKILRFASALLCGAMLLCSLSVTAFAENDDEVYDFDPNTDKIYSEAVYMVNTDTGDVVF 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM------LTTPITISKNASEYPPSNSTFK 97
+ PAS TK+MT + L E ++ + PSN+ +
Sbjct: 61 KKNESKKMYPASTTKIMTCIIALEHLSEGALSKKVEVPYDCFNDFYEDPNYSDPSNAAIE 120
Query: 98 K-GSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNA 155
+T + L L++ SA + A +A ++ + KF+ MN +K LG + T+F+NA
Sbjct: 121 PLQDNLTYKDCLYALMLPSACEAANILAYNIGGGSITKFIGMMNEKAKELGCTGTNFVNA 180
Query: 156 HGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-------- 207
HG+ +YTTA D+ ++ FP + E+ + +++
Sbjct: 181 HGLHNDNNYTTAEDLYKMTKYAYDKFPLFKKITSTYEYEMPKNDANPSGYSIYSTISLLR 240
Query: 208 ----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-------NTRNK-- 254
+ A G KTG T +G + SA + + I V LGA + +
Sbjct: 241 PGSVYEYEYAYGTKTGTTDEAGRCL-VSAAKNQYNYILVTLGAPVKDKNGEYYDDWYSMI 299
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQ-----NLSNEVPNISEEVCTTQKEIINYNTQ 309
+ +L F N +N + + + ++ + + + + +
Sbjct: 300 DALNLYKWAFTNFEMATVVNKDEQITEVKVEMGESATHVILTPESDYTALMPKSVKESGV 359
Query: 310 MKEAKDKESHFIDFEKITLLKNKITK 335
K K ES +K +L K
Sbjct: 360 QKVFKAYESVQAPVKKGDILGVMDVK 385
>gi|228924135|ref|ZP_04087411.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228835625|gb|EEM80990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 423
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 74/332 (22%), Positives = 123/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
+K L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVKELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM +LS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDLNAENSMSARDMGMLSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW + G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 282
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 283 ERFTESRELIEYGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 342
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K + + +
Sbjct: 343 KIGTELDKSLAEDGHLVAPTKKDAKVGSITLE 374
>gi|281357416|ref|ZP_06243904.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Victivallis
vadensis ATCC BAA-548]
gi|281316019|gb|EFB00045.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Victivallis
vadensis ATCC BAA-548]
Length = 391
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 66/264 (25%), Positives = 113/264 (42%), Gaps = 9/264 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK-AM 75
P + + ++D T +V+ E AS+ K+MT V F L++
Sbjct: 128 LPASQVVGSAGATSGIMVDLTTRNVLWEKNSTAKVPIASMVKMMTLLVTFEELEKNPAIS 187
Query: 76 LTTPITISKNASEYPPS-NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L +P+ I+K A P + T L + LK + +KSAND AV +AE + F
Sbjct: 188 LESPVQITKTALAVPRTGVVWLDPRETFPLSDLLKAVTIKSANDAAVQVAEFIGGDVDSF 247
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQH---GHYTTARDMAILSWRIKT----DFPQYMHY 187
V MN ++ LG++ +HF++ G+ + ARDM +L+ ++
Sbjct: 248 VNRMNLRAQTLGMTNSHFVSPCGLPDKKKGNSLSCARDMVVLAEQLLEYPDVMRWSTTKQ 307
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
I+ E K + G DG+KTGF ASG+ + S ++ + ++ + G
Sbjct: 308 DFIREGEKKTMLTTTNKLVNPRWPGVDGLKTGFINASGYCLTFSVLRDGRRIVGCVTGFK 367
Query: 248 DRNTRNKVSASLLSMGFYNKTDRK 271
R++ S L+ G+ K
Sbjct: 368 SARDRDRFSRKLIDWGYARAAALK 391
>gi|333022589|ref|ZP_08450653.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
Tu6071]
gi|332742441|gb|EGJ72882.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
Tu6071]
Length = 315
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/263 (26%), Positives = 110/263 (41%), Gaps = 20/263 (7%)
Query: 22 IAETNKLPYYTLLDTNTG----HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
A K + LLD G + A D AS TK+MTA VV + +T
Sbjct: 55 AAPAIKAEHAFLLDARDGSQERELWAGAKADESVPMASTTKIMTAIVVLKHPEWLDRQIT 114
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK------TE 131
E S + + G T+T L +++ S D A A+A++
Sbjct: 115 VKQEYRDYVQEVGASTADLQTGDTLTARQLLHAMLIPSGADAARALADTFGNGDTEEARI 174
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
F+ MN ++ LGL THF + G+ Q +++TARD+A L R +
Sbjct: 175 TDFIAQMNAEAQQLGLKGTHFDSVDGISQGNNHSTARDLAKLGQRAMLQPVFAEVVKNTQ 234
Query: 192 GLE--------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + NTN +GT+ GA G+KTG G+ +V +A + +++L+ VI
Sbjct: 235 YKTEAPAANGHTRYYTWNNTNELLGTYDGALGVKTGSGPEDGYCVVFAAERDNRTLVGVI 294
Query: 244 LGALDRNTRNKVSASLLSMGFYN 266
LG R + +L GF +
Sbjct: 295 LGDDTG--RFDDATKVLDWGFAH 315
>gi|229161459|ref|ZP_04289440.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
gi|228621996|gb|EEK78841.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
Length = 338
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 70/274 (25%), Positives = 121/274 (44%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + L+D ++G VI + + A+L+KLMT Y
Sbjct: 11 LLSFLITALIVLYFYLYVNGPVIQAKSAILIDASSGEVIYKKNEETLIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V L + K L + IS + S T+ + L L++ N A+A+
Sbjct: 71 IVLEQLNDGKIQLDESVKISNEVFQAETSPIQVTSKDKTTVRDLLHALLLTGNNRSALAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLG-LSATHFMNAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E F MN +K L ++ F+N+ GV + TTA D+A L+ ++
Sbjct: 131 AEHISGNEDSFTTLMNEKAKQLQLSQSSPFLNSTGVNNDTNKQPSTTALDVAKLATQLVK 190
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ + K + N + G DG++T F+ ++ V++
Sbjct: 191 DFPDVLNITKLTSYQFSFKDFQVFNTNKMIYSLNKDIKLQGVDGLQTSFSTNGIYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A G+ LI+VIL A + N+ + LL GF
Sbjct: 251 AKLGNTRLISVILEADEENSTFIETKKLLQYGFD 284
>gi|227511987|ref|ZP_03942036.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus
buchneri ATCC 11577]
gi|227084795|gb|EEI20107.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus
buchneri ATCC 11577]
Length = 421
Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats.
Identities = 62/344 (18%), Positives = 122/344 (35%), Gaps = 34/344 (9%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ +D +TG ++ E P AS++KLMT Y+V ++E K
Sbjct: 27 AATVSTSQPVIYAKSAIAVDADTGQILYEKNAHQPLAIASISKLMTVYIVQKQIQEGKLS 86
Query: 76 LTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ IS ++ ++ + + + +K ++ SAN A+A+ + +
Sbjct: 87 WNDQVKISPAVAKLSTASGLTNVPLKSGKSYKVRDLVKAALIVSANAAAIALGQKVSGNA 146
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMAILSWRI 177
+ F M T++ LG+ F NA G+ + +A+D+A+L+ R+
Sbjct: 147 QNFADKMTKTARGLGIKDAKFYNAAGLTNKLTGSLMLKKDSPNAENLMSAKDIALLASRL 206
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASA 232
+ FP + + G Y N + +G+KTG + +G SA
Sbjct: 207 EESFPGLTKITRQTQMNFSGNSYAGHNQLLDDRQIAKGAVVNGLKTGTSDEAGACFAGSA 266
Query: 233 IQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI------NYIIKDFYQ 282
+ ++ V+LGA R +A L+ + F+ + K
Sbjct: 267 TYHGRRIVTVVLGARNNSATDPARFIQTAKLMGIVFHKQHPVKLAMHVHINELGTTKVPD 326
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQM-KEAKDKESHFIDFEK 325
+ + + I+ K K + +K
Sbjct: 327 GKQTKTKLVTKKTTWVWVPKSISQKQVKGKFVKTPKKLNAPIKK 370
>gi|228990988|ref|ZP_04150951.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudomycoides
DSM 12442]
gi|228997075|ref|ZP_04156706.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides
Rock3-17]
gi|229004731|ref|ZP_04162467.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides
Rock1-4]
gi|228756524|gb|EEM05833.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides
Rock1-4]
gi|228762700|gb|EEM11616.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus mycoides
Rock3-17]
gi|228768768|gb|EEM17368.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pseudomycoides
DSM 12442]
Length = 343
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 71/254 (27%), Positives = 127/254 (50%), Gaps = 12/254 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D + G V+ +N + PAS++K+MTAY++ + + K + IS
Sbjct: 87 PVVEAKAAMIIDASNGQVMYKNNEEELLAPASMSKMMTAYILLENIHKGKVHWEDQVKIS 146
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+++ + + G +T+ + L+++SAN+ AVA+AE + KTE+ F MN T+K
Sbjct: 147 AKSAQAEGARIPVQTGDVLTVKDLYHALMIQSANNSAVALAEHIAKTEQDFAHLMNQTAK 206
Query: 144 NLGLSA-THFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE----- 194
L LS T F+NA G+ T D+A L++ + TD+P+ + ++ +
Sbjct: 207 QLELSEATKFVNASGLQEPDGSETKMTVADVAKLAYHLVTDYPEILDVTHLRQSQLAFKS 266
Query: 195 ---IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ N G DG+KTGFT ++G+ +A QGD+ L+ V++G +
Sbjct: 267 TMVTSTNEMLNPANQGLYLEGMDGLKTGFTDSAGYCFTGTAKQGDKRLVTVVMGTKSQMK 326
Query: 252 RNKVSASLLSMGFY 265
R + L+S GF
Sbjct: 327 RFTETHKLMSYGFE 340
>gi|229030238|ref|ZP_04186295.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
gi|228731082|gb|EEL82007.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
Length = 338
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 74/281 (26%), Positives = 125/281 (44%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ +++ + F + L+D N+G V+ + + P A+L
Sbjct: 4 LKKFTILLLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEEIPIQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+ L E K L + IS S T+ + L L +
Sbjct: 64 SKLMTEYIAMEQLNEGKIQLDELVKISNEVFRAEKSPIQVTSKDQTTVRDLLHALFLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E F MN + L LS NA G+ + TTA D+A
Sbjct: 124 NRSALALAEHIAGNEGNFTLLMNENATQLKLSQPSPFLNATGMNNDTNKQSTTTAIDVAK 183
Query: 173 LSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCAS 224
L+ ++ TDFP ++ ++ K K NTN + G DG++T F+
Sbjct: 184 LATQLVTDFPDVLNITKLTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A +GD LI+VIL + + N+ + LL GF
Sbjct: 244 NYSFVSTAHRGDTRLISVILDSSEENSTFIETKKLLQYGFD 284
>gi|146280427|ref|YP_001170580.1| D-alanyl-D-alanine endopeptidase [Pseudomonas stutzeri A1501]
gi|145568632|gb|ABP77738.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas stutzeri A1501]
Length = 390
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 12/266 (4%)
Query: 5 LVIIAMAMLSNIFPFLSIA--ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
L+ +A L I + + L+D NT V+ + PD AS+TKLMTA
Sbjct: 88 LLFACLASLPVIHAQAAKPMVQELASGSALLVDLNTNEVLYSSNPDMVVPIASVTKLMTA 147
Query: 63 YVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
VV L + ++ ++A E S + GS ++ L L ++ S N A
Sbjct: 148 MVVLDAK----LPLDQALPVTIRDAKEMQGVYSRVRIGSEISRREMLLLTLMSSENRAAA 203
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
++A F+Q MN ++ LG+S TH++ G+ + + + ++ +
Sbjct: 204 SLAHHYPGGYAAFIQAMNAKARALGMSRTHYVEPTGLSERNVSSANDLVKLIRASRQYPL 263
Query: 182 PQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGD 236
Q K + + Y NTN V KTGFT A+G +V S
Sbjct: 264 IQQFSTTDEKTVAFRKPNYTLGFRNTNALVRKNNWDIQLSKTGFTNAAGHCLVMSTTMKQ 323
Query: 237 QSLIAVILGALDRNTRNKVSASLLSM 262
+ + V+L A + T + L
Sbjct: 324 RPVAFVVLDAFGKYTHMADANRLKKW 349
>gi|322386843|ref|ZP_08060467.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus
ATCC 51100]
gi|321269125|gb|EFX52061.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus
ATCC 51100]
Length = 425
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 70/378 (18%), Positives = 139/378 (36%), Gaps = 44/378 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ V + + P L+ +D N+G ++ E P ++T ++
Sbjct: 1 MKKLFVFLLLFFGLIAKPVLADDYEIAAKSAIAVDANSGKILYEKEATSPLEVGAITNIL 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
TAY+V+ + K L T + IS A + P + + + + L ++ SAN
Sbjct: 61 TAYLVYEAIANGKLSLETEVDISDYAYQLTVNPSIANLPLEARRYKVKDLLNASLLASAN 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------------ 159
+A+AE + +E+ FV+ M K +S +NA G
Sbjct: 121 SATIALAEKVGGSEENFVKMMKAKLKEWNISDATIVNATGTDIRLLDGSLETTNTEEEAA 180
Query: 160 ---------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ + +A D+A+++ + D+P+ + + G + N N +
Sbjct: 181 ENSKSKKKQETVNKFSAYDIAVIASHLIDDYPEVLGITSKSHVNFAGIQLENPNLMLEGS 240
Query: 211 L----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG----ALDRNTRNKVSASLLSM 262
G G+KTG + SG + V + LI V+LG D NTR V++SL++
Sbjct: 241 PSFRTGVKGLKTGGSEQSGVSFVGVTSEKGMRLITVVLGVAQEDNDPNTRFGVTSSLMTY 300
Query: 263 GFYNKTDRKKINYIIKDFYQQN------LSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
N + + + Q SE++ ++ ++
Sbjct: 301 VTQNFSPTVLVKKGERYNNSQVAVRDSQEDKVAAVASEDLVILERIANQAEHKVTFTPSP 360
Query: 317 ESHFIDFEKITLLKNKIT 334
+ +K +++
Sbjct: 361 QELQAPLKKGSVVGTLTY 378
>gi|253579997|ref|ZP_04857264.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus sp.
5_1_39B_FAA]
gi|251848516|gb|EES76479.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus sp.
5_1_39BFAA]
Length = 419
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 69/249 (27%), Positives = 109/249 (43%), Gaps = 12/249 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ L++ +TG +I + AS TK+MT + K L + S
Sbjct: 176 SLSSDCALLMNADTGQIIYGKNENVAHANASTTKIMTCILALENCK-----LNEKVKFSP 230
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A+ PS G L + L L++ S ND AVAIAE + + KFV+ MN +
Sbjct: 231 YAASIEPSKLYANAGEIFYLKDLLYSLMLPSHNDTAVAIAEHVSGSTAKFVKLMNKKAAE 290
Query: 145 LGLSATHFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYM-----HYFQIKGLEIKGK 198
+G + THF +G+ + HYTTA D+A ++ +Y +
Sbjct: 291 IGCTNTHFATPNGLDAGYNHYTTASDLAKIAQYAIKKPMFRKLVSTGYYSFSNLNTGRSY 350
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVA-SAIQGDQSLIAVILGALDRNTRNKVSA 257
TN +G G GMKTG+T +G+ V S + I+V+LGA + R + S
Sbjct: 351 SIGTTNALLGNVPGVQGMKTGYTNKAGYCFVGLSYSARGNTYISVVLGADSSSARWQDSR 410
Query: 258 SLLSMGFYN 266
+LL+ + +
Sbjct: 411 TLLTYAYNH 419
>gi|1420858|emb|CAA61521.1| penicillin-binding protein [Streptococcus pyogenes]
Length = 324
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 64/315 (20%), Positives = 128/315 (40%), Gaps = 27/315 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + +D +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+A+++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAVIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRKKI-- 273
++ +G + VA++++ +I V+L A D K + LL N + I
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNADQSHEDDLAIFKTTNQLLQYLLINFQKVQLIEN 301
Query: 274 NYIIKDFYQQNLSNE 288
N +K Y + +
Sbjct: 302 NKPVKTLYVLDSPEK 316
>gi|229170279|ref|ZP_04297958.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
gi|228613202|gb|EEK70348.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
Length = 338
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 76/274 (27%), Positives = 121/274 (44%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + L+DTN+G ++ + + P A+L+KLMT Y
Sbjct: 11 LLSFLITALIVLYFYLYVNGPIIQAKSAILIDTNSGEIVYKKNEETPIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ L E K L + IS S T+ + L L + N A+A+
Sbjct: 71 IALEQLNEGKIQLDELVKISNEVFRAETSPIQVTSKDKTTVRDLLHALFLTGNNRSALAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E F MN+ +K L LS NA G+ + TT+ D+A L+ ++
Sbjct: 131 AEHIAGNEDNFTLLMNDKAKQLKLSQPSPFLNATGINNDTNKQSTTTSIDVAKLATQLVK 190
Query: 180 DFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ K K NTN + G DG++T F+ ++ V++
Sbjct: 191 DFPDVLNVTKLTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A +GD LI+VIL A D N+ + LL GF
Sbjct: 251 ATRGDTRLISVILDAGDENSTFIETKKLLQYGFD 284
>gi|317508309|ref|ZP_07965989.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC
BAA-974]
gi|316253484|gb|EFV12874.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC
BAA-974]
Length = 297
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 57/285 (20%), Positives = 107/285 (37%), Gaps = 27/285 (9%)
Query: 3 QFLVIIAMAMLSNIFPFLSIA--------------------ETNKLPYYTLLDTNTGHVI 42
+ L+ I+ AM + + P + + D +TG V+
Sbjct: 7 RTLIAISSAMAATASFATADPDDPTLAPQSGVVQPSGSEPVPDGAAPAWLVADLDTGEVL 66
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
A P ++PAS K + A VV S L + + A++ + G T
Sbjct: 67 AARNPHSHYHPASTIKTLLAIVVLSELDVGQ---SLTENADDEAADRESIVRFIRPGETH 123
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T+ L+ L++ S+N A +A +L + MN + LG + T G+ G
Sbjct: 124 TVRELLEALLMISSNGAANTLARALGGVGPAVAK-MNAEAARLGANDTRAATPSGLEAPG 182
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--KYPNTNWAVGTFLGADGMKTGF 220
++ D+A+ + Q + + N + +G++ G G KTGF
Sbjct: 183 VSSSPHDLALFFRAALRNPTFAEIVRQERATVSGSPAIQLVNRDPLLGSYPGMLGGKTGF 242
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
T + +N V +A + + L+ ++ + + +L GF
Sbjct: 243 TDEAQYNFVGAAARHGRRLVVAVMHNPGSYP-AQQARALFDWGFA 286
>gi|167946344|ref|ZP_02533418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 228
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 6/228 (2%)
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+I++S ND VA+AE + +E+ F + MNN ++ LG+ A+HF+N+ G+ HYTT D+
Sbjct: 1 MIIQSGNDACVALAEHIAGSEETFAEVMNNHARRLGMHASHFINSTGLPDKDHYTTPEDI 60
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
A ++ +FP Y ++ K K N N + DGMKTG T A+G+ +VA
Sbjct: 61 AKVAMATIREFPDYYKWYSEKSFVFNKIKQHNRNKLLWRDNTVDGMKTGHTEAAGYCLVA 120
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
SA + LI+V++G R S +LL+ GF + + + P
Sbjct: 121 SAQREQMRLISVVMGTKSEKARASASQALLNYGFRFFESHRLYSAGETLNRARIWKGNKP 180
Query: 291 NISEE------VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
I+ V K+ N Q+ +++ ++ +
Sbjct: 181 QIALGLAHDLHVSIPHKQYKKLNAQLDVIPTITGPVQQGQEVGQVRIE 228
>gi|299143329|ref|ZP_07036409.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus sp.
oral taxon 386 str. F0131]
gi|298517814|gb|EFI41553.1| putative D-alanyl-D-alanine carboxypeptidase [Peptoniphilus sp.
oral taxon 386 str. F0131]
Length = 436
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 73/331 (22%), Positives = 134/331 (40%), Gaps = 26/331 (7%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y L D +G ++ D AS +KL++ +VV +K+ + I +S
Sbjct: 75 AYILGDYRSGKILESYNIDEVKAMASTSKLVSIFVVMDKIKDGTIKKNDMVIIDHESSLL 134
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
S+ K+ T+ +K +V S ND A+A+ + +++ FV MN + LGL
Sbjct: 135 TGSSYKLKENDQKTVWQLIKAALVVSGNDAITALAKHISGSKEAFVSLMNKKCQELGLKN 194
Query: 150 THFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNT 203
H +N G+ + + T R+M IL+ + +P+ + + + + Y NT
Sbjct: 195 AHMVNPTGLTDYMVEDYNKMTTREMFILARELIKAYPELLEITSLTEIAEPDRNYLEYNT 254
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGD-------QSLIAVILGALDRNTRNKVS 256
N A+G G DG+KTG+T A+G ++ + + LI VI+G+ R +
Sbjct: 255 NPALGIIKGVDGLKTGYTNAAGRCLIVTGFRKGDNTHTKDTRLIGVIIGSRTDWQRYVSA 314
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD- 315
L+ G N + Q S +V + ++ + + ++
Sbjct: 315 TKLIGEGLDKYKYTVIGN--PDEPVTQIEVENAAKKSIDVYEKSNGTVLWDGKSEISRSF 372
Query: 316 ----------KESHFIDFEKITLLKNKITKK 336
E F+ K T+ +I K+
Sbjct: 373 EIKPNLKAPLSEGEFVGVVKYTMNGEEILKQ 403
>gi|54022905|ref|YP_117147.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152]
gi|54014413|dbj|BAD55783.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152]
Length = 434
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 61/262 (23%), Positives = 99/262 (37%), Gaps = 21/262 (8%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + + D +TG V+A P + PAS K++ A V L
Sbjct: 103 APPLPRDISATAWMVSDLDTGEVLAAKDPHGRYRPASTIKVLLAIVALR-----TLDLDR 157
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T ++ ++ + G T ++ LI+ S ND A AIA + +K V M
Sbjct: 158 VVTGTQADADVDGTRVGIGPGGRYTNRQLMQALIMASGNDAAHAIA-AQLGGDKATVARM 216
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--------------RIKTDFPQY 184
N +K+L T G+ G T+A D+++L
Sbjct: 217 NEVAKSLSAFDTRAATPSGLDGPGMTTSAYDLSLLFREAMTIPLFAELIRTEQIDFPGYP 276
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ + G N N + + GA G KTGFT + VA+A + + L+ +L
Sbjct: 277 KNPLIPDDTDHPGFPIGNDNQLLYNYAGALGGKTGFTDDARQTFVAAAERDGRRLVVTLL 336
Query: 245 GALDRNTR-NKVSASLLSMGFY 265
A R + +A LL GF
Sbjct: 337 KADVLPIRPWEQAARLLDYGFA 358
>gi|291548692|emb|CBL24954.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14]
Length = 478
Score = 133 bits (333), Expect = 4e-29, Method: Composition-based stats.
Identities = 64/343 (18%), Positives = 125/343 (36%), Gaps = 20/343 (5%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+A SN ++D N+G V+ + PAS+TKL+T V
Sbjct: 58 AIAPDSNSVENWPQGPATYADSAIVMDMNSGAVLYSKQIEKKHYPASITKLLTTLVALDN 117
Query: 69 LKEKKAMLTTPITIS--KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ + + +IS + + + L L + + +A ++ +
Sbjct: 118 AELTDTVEFSQDSISFLEYGDAHIGMTPGEQISMEDALYAVLLASANEVSYAVAESVGKK 177
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ F+Q MN+ S+ LG + +H+ NA+G+ HYTTA DMA + +
Sbjct: 178 MGGGYDTFIQAMNDESEKLGCTGSHWTNANGLHDEQHYTTAHDMARIGAAVYQKEAFRTI 237
Query: 187 YFQIKG-----------LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ + K + G KTG+T + +V A G
Sbjct: 238 SQSLSHTIPVTNLVNEERTFQQKHKMLWPQNDNYYEYCKGGKTGYTDQARTTLVTMADNG 297
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR----KKINYIIKDFYQQNLSNEVPN 291
D L+AV+L + + ++ + N + +K+ +K + ++ +P
Sbjct: 298 DMQLVAVVLYDFGNDA-YIDTRAMFDYAYSNFSKISLKDQKLPEGVKSYEDEDAYIVLPK 356
Query: 292 ISE--EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ +V KE N + + + K + K +
Sbjct: 357 SAQFSDVKAEVKEDSNKDGSGTVTFTYKGQEVGSVKAAIEKTE 399
>gi|331089269|ref|ZP_08338171.1| hypothetical protein HMPREF1025_01754 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330405821|gb|EGG85350.1| hypothetical protein HMPREF1025_01754 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 514
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 61/333 (18%), Positives = 118/333 (35%), Gaps = 27/333 (8%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+++ N+G ++ + PAS+TKL+TA V + +
Sbjct: 59 PQGPHVYANSAIVMEMNSGAILYGKKINDKHYPASITKLLTALVALENADPDDEVYFSED 118
Query: 81 TIS--KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
++S + L L + + IA ++ + + + F+Q M
Sbjct: 119 SVSFLEYGDASIGMRPGEILSMNDALYGMLLASANEVSYAIAESVGKKMGGGFETFIQKM 178
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + LG + +H+ NA+G+ HYTTA DMA++ F ++ Q I
Sbjct: 179 NERCEELGCTGSHWTNANGLHDENHYTTAHDMALIGS-AVYQFDKFREVTQTLNYTIPPT 237
Query: 199 KYPNTNWA------------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
N + ++ G KTG+T + +V A D L+AV+L
Sbjct: 238 NLVNESRTFQQNHKMLWVGAHYSYDYCTGGKTGYTDQAKTTLVTMADNADMQLVAVVL-- 295
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKIN----YIIKDFYQQNLSNEVPNISEEVCTTQKE 302
D+ + ++ + N + ++ F ++ +P +V + + E
Sbjct: 296 EDQGDVYVDTRAMFDYVYANFSKVFLNEHDKPDGVRKFKTEDAYVVLPKG-IDVSSLEHE 354
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
I + Q K + K + K
Sbjct: 355 ITITDRQNAAGKLTYLY-----KGQNVGTVEVK 382
>gi|119953389|ref|YP_945598.1| D-alanyl-D-alanine carboxypeptidase [Borrelia turicatae 91E135]
gi|119862160|gb|AAX17928.1| D-alanyl-D-alanine carboxypeptidase [Borrelia turicatae 91E135]
Length = 312
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 88/311 (28%), Positives = 130/311 (41%), Gaps = 33/311 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+ VI+ + +LS++F L T L+D +T ++ P + P
Sbjct: 1 MKIIPVILNILILSSVFGELFSIDLLEIKKVTEDAKSVVLIDYDTKCILYSKNPGLVFPP 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNALK 109
ASLTKL+T Y ++K L T + IS AS Y S ++G + + LK
Sbjct: 61 ASLTKLVTIYTALVEARKKNIDLKTTVPISSAASYYNLPLDSSLMFLEEGHKVNFEELLK 120
Query: 110 LLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
LI+ S ND A+AIAE + FV MN NLGL F++ G + TA
Sbjct: 121 GLIISSGNDAAIAIAEFIVGKNLSDFVDLMNINVLNLGLINMSFVDTSG-YSSDNKITAL 179
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIK--------------GKKYPNTNWAVGTFLGAD 214
+MA+ + +F + +K K N N + + AD
Sbjct: 180 EMALFARTYIEEFEFILDIHSLKDFIYPRSENLGNTSSLKMLNFKQKNKNVLIFNYPYAD 239
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGAL------DRNTRNKVSASLLSMGFYNKT 268
G+KTG+ SG N+VA+A + D LIAV+LG R ++ L GF N
Sbjct: 240 GLKTGYIKTSGLNLVATAKKDDIRLIAVVLGVNKGVDNVGERKRALIAQKLFEYGFGNYA 299
Query: 269 DRKKINYIIKD 279
I I +
Sbjct: 300 QFSFIGKIKRK 310
>gi|228952885|ref|ZP_04114953.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228806795|gb|EEM53346.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 307
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF----MNAHGVVQHGHYTTARDMAI 172
N A+A+AE + E F MN +K L L + TTA D A
Sbjct: 124 NRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNDTDKQSTTTAIDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ ++ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAAKLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A GD LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|318059553|ref|ZP_07978276.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG]
gi|318080461|ref|ZP_07987793.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF]
Length = 315
Score = 133 bits (333), Expect = 5e-29, Method: Composition-based stats.
Identities = 70/262 (26%), Positives = 111/262 (42%), Gaps = 20/262 (7%)
Query: 23 AETNKLPYYTLLDTNTG----HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A K + LLD G + A D AS TK+MTA VV + + +T
Sbjct: 56 APAIKAEHAFLLDARDGSQERELWAGAKADESVPMASTTKIMTAIVVLKHPEWLERQITV 115
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK------TEK 132
E S + + G T+T L +++ S D A A+A++
Sbjct: 116 KQEYRDYVQEVGASTADLQTGDTLTARQLLHAMLIPSGADAARALADTFGNGDTEEARIS 175
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F+ MN ++ LGL THF + G+ Q +++TARD+A L R +
Sbjct: 176 DFIAQMNAEAQQLGLKGTHFDSVDGISQGNNHSTARDLAKLGQRAMLQPVFAEVVKNTQY 235
Query: 193 LE--------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ + NTN +GT+ GA G+KTG G+ +V +A + +++L+ VIL
Sbjct: 236 KTEAPAANGHTRYYTWNNTNELLGTYDGALGVKTGSGPEDGYCVVFAAERDNRTLVGVIL 295
Query: 245 GALDRNTRNKVSASLLSMGFYN 266
G R + +L GF +
Sbjct: 296 GDDTG--RFDDATKVLDWGFAH 315
>gi|325265477|ref|ZP_08132200.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
gi|324029335|gb|EGB90627.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
Length = 476
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 64/329 (19%), Positives = 120/329 (36%), Gaps = 25/329 (7%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
++D +G ++ D PAS+TKL+T V + T
Sbjct: 80 PGGPKVYADSAVVMDMESGAILYGKNMDAKHFPASITKLLTTLVALENADLTDKVKFTED 139
Query: 81 TIS--KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE-SLCKTEKKFVQH 137
+IS + + +L L + ++ +A ++ E L F+Q
Sbjct: 140 SISFLQYDDAQIGMKVGEELSLEDSLHAVLLASANEVSHAVAESVGELRLGGNYDTFIQK 199
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY-------MHYFQI 190
MN+ +K LG + +H++N +G+ HYTTA DMA+++ +
Sbjct: 200 MNDRAKELGCTNSHWVNPNGLHDDEHYTTAHDMALIASAVYQQEEFRTIMGKLEYKIGAT 259
Query: 191 KGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ + N + G KTG+T + +V A GD L AV+L
Sbjct: 260 NLTQEERVFQQNHKMLWPENYYYYEYCTGGKTGYTDQAKTTLVTMADNGDMHLAAVVLYD 319
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKIN----YIIKDFYQQNLSNEVPNISEEVCTTQKE 302
+ + +++ F N N I +F QN +P+ S + + K
Sbjct: 320 YGVDA-YTDTRAMMDYVFSNFKKVPVKNLETSEDINNFNTQNPYVVLPD-SVDFSSLDKN 377
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKN 331
I+ +++ K ++ K + +
Sbjct: 378 IVLTENGIRDGKVNYTY-----KGQAVGS 401
>gi|229011816|ref|ZP_04168997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
gi|228749447|gb|EEL99291.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
Length = 338
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 76/274 (27%), Positives = 121/274 (44%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + L+DTN+G ++ + + P A+L+KLMT Y
Sbjct: 11 LLSFLITALIVLYFYLYVNGPIIQAKSAILIDTNSGEIVYKKNEETPIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ L E K L + IS S T+ + L L + N A+A+
Sbjct: 71 IALEQLNEGKIQLDELVKISNEVFRAETSPIQVTSKDKTTVRDLLHALFLTGNNRSALAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E F MN+ +K L LS NA G+ + TT+ D+A L+ ++
Sbjct: 131 AEHIAGNEDNFTLLMNDKAKQLKLSQPSPFLNATGINNDTNKQSTTTSIDVAKLATQLVK 190
Query: 180 DFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ K K NTN + G DG++T F+ ++ V++
Sbjct: 191 DFPDVLNVTKLTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A +GD LI+VIL A D N+ + LL GF
Sbjct: 251 ATRGDTRLISVILDAGDENSTFIETKKLLQYGFD 284
>gi|294790789|ref|ZP_06755947.1| serine-type D-Ala-D-Ala carboxypeptidase [Scardovia inopinata
F0304]
gi|294458686|gb|EFG27039.1| serine-type D-Ala-D-Ala carboxypeptidase [Scardovia inopinata
F0304]
Length = 466
Score = 132 bits (332), Expect = 5e-29, Method: Composition-based stats.
Identities = 70/314 (22%), Positives = 123/314 (39%), Gaps = 33/314 (10%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ +D TG ++ Y D P AS+TK++T Y+V+ + + K +T + IS
Sbjct: 29 PHITAAHAFAMDYATGRILLNQYGDRPAGIASMTKVITLYLVYKAIDQGKISWSTKVPIS 88
Query: 84 KNASEY---PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+S + + K + T+ + + VKSAN A+++AE + +E +FV M
Sbjct: 89 SYSSRISTNWLTTTVPMKKKSYTVRDLVTAAFVKSANSAAISLAEKIAGSEPRFVDMMRK 148
Query: 141 TSKNLGLSATHFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMH 186
+ G++ N+ G+ + +ARD+A+ W D+PQ +
Sbjct: 149 QVRQWGITDAKLYNSSGLNNSFLDKNIYPGSSKKAENMMSARDIALAVWHFIHDYPQVLS 208
Query: 187 YFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
G +T+ + G DG KTG T +G A+A++ +I V
Sbjct: 209 MTSKAHATFDGMPLTSTDHMLPGLNSAYPGLDGFKTGTTEIAGACFAATAVRHGMRVITV 268
Query: 243 ILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY-----QQNLSNEVPNIS 293
I A + R + LL F + VP ++
Sbjct: 269 IQHASHADGNEEARFQAMKKLLDYCFTAYGLVVVVRKGKSFKGSSLPLVDGKKKSVPLVA 328
Query: 294 EE---VCTTQKEII 304
+ VC +QKE +
Sbjct: 329 QSDLTVCLSQKEKV 342
>gi|228921242|ref|ZP_04084570.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228838412|gb|EEM83725.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 338
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 69/281 (24%), Positives = 121/281 (43%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E F MN +K L L N+ G+ + TTA D A
Sbjct: 124 NRSALALAEHIAGNEDNFTILMNKKAKELKLLQPSPFLNSTGINNDTNKQSTTTAIDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ R+ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A GD LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|218896308|ref|YP_002444719.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
G9842]
gi|218541762|gb|ACK94156.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
G9842]
Length = 428
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 78/338 (23%), Positives = 131/338 (38%), Gaps = 31/338 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ LV I + L + P + + T +D TG V+
Sbjct: 5 KKILVFITVICLFLLTPMTLRAETNIGVNPEQVAPPPAEGPNVFSQFATTIDAKTGDVLY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 65 DKNAYHRAYPASTTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGARDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
HYTT DMA+++ + + Q M+ + + + G KTG
Sbjct: 180 NHYTTPYDMAMITKGVQNYPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGGKTG 239
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---I 276
FT + +V + +I V++ A R + + F + ++
Sbjct: 240 FTNEARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMADYSFGQFVKQTVLDKHSWH 298
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
K Y N S E+ + E N T + A
Sbjct: 299 QKTTYLNKDINSELEKSAELMLKKDEGKNVKTIFRAAS 336
>gi|218231015|ref|YP_002366059.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
B4264]
gi|218158972|gb|ACK58964.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264]
Length = 428
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 79/338 (23%), Positives = 133/338 (39%), Gaps = 31/338 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ LV I + L + P + + T +D TG V+
Sbjct: 5 KKILVFITVICLFLLTPMTLRAETNIGVNPEQVAPPPAEGPNVFSQFATTIDAKTGDVLY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 65 DKNAYHRAYPASTTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
HYTT DMA+++ + + Q M+ + + + G KTG
Sbjct: 180 NHYTTPYDMAMITKGVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGGKTG 239
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---I 276
FT + +V + +I+V++ A R + + F T + ++
Sbjct: 240 FTNEARNTLVLLNEKDGNRIISVVM-ASQRPEIYEDLKQMADYSFGQFTKQMVLDKHNWH 298
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
K Y N S E+ + E N T + A
Sbjct: 299 QKTTYLNKDVNSELEQSAELMLKKDEGKNVKTIFRAAS 336
>gi|317500835|ref|ZP_07959047.1| hypothetical protein HMPREF1026_00990 [Lachnospiraceae bacterium
8_1_57FAA]
gi|316897715|gb|EFV19774.1| hypothetical protein HMPREF1026_00990 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 503
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 61/333 (18%), Positives = 118/333 (35%), Gaps = 27/333 (8%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+++ N+G ++ + PAS+TKL+TA V + +
Sbjct: 48 PQGPHVYANSAIVMEMNSGAILYGKKINDKHYPASITKLLTALVALENADPDDEVYFSED 107
Query: 81 TIS--KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
++S + L L + + IA ++ + + + F+Q M
Sbjct: 108 SVSFLEYGDASIGMRPGEILSMNDALYGMLLASANEVSYAIAESVGKKMGGGFETFIQKM 167
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + LG + +H+ NA+G+ HYTTA DMA++ F ++ Q I
Sbjct: 168 NERCEELGCTGSHWTNANGLHDENHYTTAHDMALIGS-AVYQFDKFREVTQTLNYTIPPT 226
Query: 199 KYPNTNWA------------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
N + ++ G KTG+T + +V A D L+AV+L
Sbjct: 227 NLVNESRTFQQNHKMLWVGAHYSYDYCTGGKTGYTDQAKTTLVTMADNADMQLVAVVL-- 284
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKIN----YIIKDFYQQNLSNEVPNISEEVCTTQKE 302
D+ + ++ + N + ++ F ++ +P +V + + E
Sbjct: 285 EDQGDVYVDTRAMFDYVYANFSKVFLNEHDKPDGVRKFKTEDAYVVLPKG-IDVSSLEHE 343
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
I + Q K + K + K
Sbjct: 344 ITITDRQNAAGKLTYLY-----KGQNVGTVEVK 371
>gi|323694964|ref|ZP_08109114.1| hypothetical protein HMPREF9475_03978 [Clostridium symbiosum
WAL-14673]
gi|323501054|gb|EGB16966.1| hypothetical protein HMPREF9475_03978 [Clostridium symbiosum
WAL-14673]
Length = 529
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 80/331 (24%), Positives = 134/331 (40%), Gaps = 30/331 (9%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + ++D N+G VI + PAS+TK++TA +V
Sbjct: 23 VLASADWPDNVSIESDAGIIMDANSGAVIYGKNIHATYAPASITKVLTALIVLERC---- 78
Query: 74 AMLTTPITISKNASEYPPSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ +T S+NA SNS+ + G T ++ + L L++KSAN+ A A+AE + T
Sbjct: 79 -SMDETVTFSQNAVYNVESNSSSAGYDTGDTASVKDCLYALLLKSANEAANALAEHISGT 137
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-------Q 183
++F MN + LG +HF N G+ HY +A DMA+++ +
Sbjct: 138 TEEFAVLMNEKAAELGCQDSHFSNPSGLNDENHYVSAYDMALITKAAFENADFSKIVATT 197
Query: 184 YMHYFQIKGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
Y K K NW G KTG+T + +V A QGD
Sbjct: 198 YYELPPNKKNPEGQGISPGNKMIKKNWPDQYRPDVIGGKTGYTSIALNTLVIGAQQGDTK 257
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+ VIL + + +LL+ GF N + +Y K F ++ + T
Sbjct: 258 FVTVILHSSGTQ--YSDTKALLNFGFNNFKAVRIADY-DKTFSTIGDDLKISG----LPT 310
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
++K+++ + K DF + T+
Sbjct: 311 SEKQVLTIDPDSKI---ILPVTADFSETTVS 338
>gi|75758555|ref|ZP_00738675.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|74493989|gb|EAO57085.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
thuringiensis serovar israelensis ATCC 35646]
Length = 434
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 73/332 (21%), Positives = 125/332 (37%), Gaps = 34/332 (10%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 54 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 113
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K +GL F+
Sbjct: 114 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKVGLKKYKFV 173
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
N+ G+ + +ARDM IL+ I T +P+ + + +
Sbjct: 174 NSTGLNNADLKGKHPEGTDPTGENSMSARDMGILAKTIITKYPEMLEDTKQRFRNFPDNH 233
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K + N NW ++ G DG+KTG + +G+ +A +GD LI+VI+ +
Sbjct: 234 PKPIRMENWNWMLPGAAFSYDGTDGLKTGSSDTAGYGFTITAKRGDVRLISVIIKTKSMD 293
Query: 251 TRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R S L+ GF N +K + +E+ K+
Sbjct: 294 ERFTESRELIEHGFNNFEKQKLKVNKNNTISVVKGKEDQVTVAPEKEITVIAKKGSKEPY 353
Query: 309 QMKEAKDKE-----SHFIDFEKITLLKNKITK 335
++ DK +K T + + +
Sbjct: 354 KIGTELDKSLAEDGHLVAPXKKDTKVGSITLE 385
>gi|125625313|ref|YP_001033796.1| DacA protein [Lactococcus lactis subsp. cremoris MG1363]
gi|124494121|emb|CAL99122.1| DacA protein [Lactococcus lactis subsp. cremoris MG1363]
gi|300072127|gb|ADJ61527.1| D-alanyl-D-alanine carboxypeptidase [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 434
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 80/382 (20%), Positives = 142/382 (37%), Gaps = 50/382 (13%)
Query: 1 MRQFLVIIAMA---------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYP-DHP 50
M++ +I + + T +D ++G ++ D
Sbjct: 1 MKKIAIIFCTLLMSLSVLSSFAVSADTTTTNNFTVAAKSAIAIDASSGKILYAQNADDAS 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDN 106
AS+TKL+TAY+V+ + E K TT + IS A SN + T+ +
Sbjct: 61 TRIASITKLLTAYLVYKNVAENKLTWTTKVPISDYAYELTQNSNASNIPLAQNGQYTVKD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG---- 162
L L++ SAN A+A+AE + +E KFV M K+ G++ +H +NA G+
Sbjct: 121 LLNALLLPSANSAAIALAEKIAGSEPKFVDMMTKQMKDWGITDSHLVNASGLPNDDLNGH 180
Query: 163 ----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAV 207
+ +A+ +A LS+ + DFP+ + + + NTN +
Sbjct: 181 IYPGSGASATNTMSAKAVATLSYHLIQDFPEVLQITKKTEIPFDTGNEEKMTLTNTNQML 240
Query: 208 GTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR----NTRNKVSASL 259
F G DG+KTG T + Q +I V+L A D +T ++ L
Sbjct: 241 SGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVLEATDPAADNSTPFTLTNQL 300
Query: 260 LSMGFYNKTDRKKINYI------IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
++ + + + + V ++ + T + Y T
Sbjct: 301 MNYVYGHWRTTNLVQKNQSLDDFKEIAVTDGKEKSVQLVAPQNVTPV---VPYATDGSAD 357
Query: 314 KDKESHFIDFEKITLLKNKITK 335
D +K ++ ITK
Sbjct: 358 TKPLVIKFDKKKNATVEATITK 379
>gi|291087522|ref|ZP_06571984.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
gi|291074901|gb|EFE12265.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
Length = 489
Score = 132 bits (332), Expect = 6e-29, Method: Composition-based stats.
Identities = 71/324 (21%), Positives = 123/324 (37%), Gaps = 30/324 (9%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
++D ++G V+ + PAS+ KL+TA VV L +T S +A
Sbjct: 2 ADIGIVIDADSGAVLFGQGIHNQSPPASIAKLLTALVVVENS-----SLDDMVTFSHDAV 56
Query: 88 EYP----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ ++G +++ + L LL+++S+N A A+AE + + FV+ MN
Sbjct: 57 YNVESGSGNKKNIEEGDVLSVRDCLYLLLLQSSNQAANALAEHVAGSRDAFVEMMNEKVS 116
Query: 144 NLGL-SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE-------I 195
LG THF N G+ + +A DMA+++ D Q K +
Sbjct: 117 ELGCVDDTHFANPSGLNDDTQHVSAYDMALIAK-AAFDNQQVYEIASTKSYKLPATINNP 175
Query: 196 KGKKYPNTNW--------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
G N + + + A KTG+T +G +V A + + LI+VIL
Sbjct: 176 NGVTCTNEHRLIITEDETSELYYPAAKAGKTGYTSLAGNTLVTCAEEDGRCLISVILKGQ 235
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+LL GF + + + E ++ + I
Sbjct: 236 PSPNYFLDGKNLLQFGFERFQNLSV----PDNETRYVTGEESVAVNGTEYSPSDLEIEAG 291
Query: 308 TQMKEAKDKESHFIDFEKITLLKN 331
T + KD E +T+L +
Sbjct: 292 TVITIPKDASFQDAALELVTVLPD 315
>gi|218132847|ref|ZP_03461651.1| hypothetical protein BACPEC_00708 [Bacteroides pectinophilus ATCC
43243]
gi|217991720|gb|EEC57724.1| hypothetical protein BACPEC_00708 [Bacteroides pectinophilus ATCC
43243]
Length = 417
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 68/378 (17%), Positives = 130/378 (34%), Gaps = 53/378 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPF-----------LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
+++ L++I A+LS PF + Y L+D ++G V+ E
Sbjct: 4 IKRLLIVIMAALLSFTIPFQYRIYAAATRTPAALSQLYARYAALIDADSGRVLFEKNGYE 63
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS TK+MT + +T+S A+ P KKG L++ L
Sbjct: 64 AAPNASTTKIMTCLLALE-----LGNPDDVVTVSSYAASMPDVQLNIKKGEHYRLNDLLY 118
Query: 110 LLIVKSANDIAVAIAESLCKTE----------------------KKFVQHMNNTSKNLGL 147
L+++S ND AVAIAE + + + F MN + +G
Sbjct: 119 SLMLQSHNDSAVAIAEHIASSYLDGGSYHSDAASRSSEESRRLVQIFAAAMNERAAAIGC 178
Query: 148 SATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------ 197
S+ HF+ +G+ H +A D+A + + +++H + +
Sbjct: 179 SSAHFVTPNGLDAEDENGPHSISAVDLARILAVCIQN-EEFIHITRTRNYSFNNLDNTAT 237
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---RNK 254
+ NTN + G KTGFT +G+ + + ++V+L + K
Sbjct: 238 RSVHNTNAFLDMMDGVICGKTGFTGNAGYCYTCAYASDGRRFVSVVLACGWPGNKTYKWK 297
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
+ +L + R I + + + +I +
Sbjct: 298 DTRKILEYAKASYYYRDIFVPIDDYRNICVSDGTTEYVETYIPDSLSMLIADTDVVNVTY 357
Query: 315 DKE-SHFIDFEKITLLKN 331
+ + ++ +
Sbjct: 358 NLPGTIKAPVNDKDIVGS 375
>gi|163940330|ref|YP_001645214.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
gi|163862527|gb|ABY43586.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
Length = 338
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 76/274 (27%), Positives = 120/274 (43%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + L+DTN+G ++ + + P A+L+KLMT Y
Sbjct: 11 LLSFLITALIVLYFYLYVNGPIIQAKSAILIDTNSGEIVYKKNEETPIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ L E K L + IS S T+ + L L + N A+A+
Sbjct: 71 IALEQLNEGKIQLDELVKISNEVFRAETSPIQVTSKDKTTVRDLLHALFLTGNNRSALAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E F MN+ +K L LS NA G+ + TT+ D A L+ ++
Sbjct: 131 AEHIAGNEDNFTLLMNDKAKQLKLSQPSPFLNATGINNDTNKQSTTTSIDAAKLATQLVK 190
Query: 180 DFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ K K NTN + G DG++T F+ ++ V++
Sbjct: 191 DFPDVLNVTKLTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A +GD LI+VIL A D N+ + LL GF
Sbjct: 251 ATRGDTRLISVILDAGDENSTFIETKKLLQYGFD 284
>gi|282891874|ref|ZP_06300353.1| hypothetical protein pah_c200o019 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498134|gb|EFB40474.1| hypothetical protein pah_c200o019 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 427
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 77/362 (21%), Positives = 132/362 (36%), Gaps = 33/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M + + +++L S + L++ TG ++ E + PAS+TK
Sbjct: 1 MLKLTYYLIISLLFFSNSLFSNTLDVFVEAEAAILMNAETGKILYEKNIHTSYFPASITK 60
Query: 59 LMTA-------------YVVFSFLKEKKAMLTTP----ITISKNASEYPPSNSTFKKGST 101
+ TA V T+ ++ KG
Sbjct: 61 IATAAFVLKFFSDKLDVIVTAEQDSIGWVTEEAKRKSNYTLPAYWLVPGGTHMGIMKGEQ 120
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
++L++ L L++ SAND A IA+ + T FV +N +K G T F N HG+
Sbjct: 121 LSLEDLLHGLMLVSANDSANVIAQYVGGTVPDFVDQLNAYAKQAGCQHTTFHNPHGLHHP 180
Query: 162 GHYTTARDMAILSWRIK-----TDFPQYMHYFQIKGLEIKGKKYPNTNW----AVGTFLG 212
H TTA DMA+L+ + Y + K + + + +
Sbjct: 181 EHKTTAYDMALLAKEALSIPAFCKMFGTVKYTRPKTNKQESSVLVQNHPLLKQGKFYYAK 240
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN-KTDRK 271
A G KTG+T + N+V +A D++LIAV+L +R+ K + L F K +R
Sbjct: 241 ALGAKTGYTNLAAHNLVVAARDKDRTLIAVLLKTKERDQLFKDAIKLFEAAFQQPKVERL 300
Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ----MKEAKDKESHFIDFEKIT 327
+ I+ F Q+ P + + + E + E + I
Sbjct: 301 LLRQGIQKFTQKPHWASQPLKAYLDEDVKISYFSAEEPQVQCAVEWLNLEPPIQKGQTIG 360
Query: 328 LL 329
+
Sbjct: 361 QV 362
>gi|229095861|ref|ZP_04226840.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
gi|229114814|ref|ZP_04244228.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
gi|228668879|gb|EEL24307.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
gi|228687694|gb|EEL41593.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
Length = 407
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 72/327 (22%), Positives = 132/327 (40%), Gaps = 17/327 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPKEGPNVFSQFAATIDAKTGDLLYDKNAHHRAYPASVTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETVNRNTALMILMVLSANDVSYAIAEHIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT D+A+++ +P+ + K
Sbjct: 131 FANMMNEKAKQLGATDSHFVTPNGLHDPNHYTTPYDIAMITR-GVQKYPEILQAMNTKRT 189
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + + + G KTGFT + +V + +I V++ A R
Sbjct: 190 TVTTSRQTVSIFNKSIYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 248
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F T + ++ K Y + S E+ + E N
Sbjct: 249 EIYEDLKQMAEYSFGQFTKQTVLDKHSWHQKTTYLNKDIDSELEKSAELVLKKDEGKNVK 308
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKIT 334
T + A + + K +
Sbjct: 309 TIFRAASLDKDSL--YHKGIHRGEVVG 333
>gi|153815363|ref|ZP_01968031.1| hypothetical protein RUMTOR_01597 [Ruminococcus torques ATCC 27756]
gi|145847222|gb|EDK24140.1| hypothetical protein RUMTOR_01597 [Ruminococcus torques ATCC 27756]
Length = 519
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 61/333 (18%), Positives = 118/333 (35%), Gaps = 27/333 (8%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+++ N+G ++ + PAS+TKL+TA V + +
Sbjct: 64 PQGPHVYANSAIVMEMNSGAILYGKKINDKHYPASITKLLTALVALENADPDDEVYFSED 123
Query: 81 TIS--KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
++S + L L + + IA ++ + + + F+Q M
Sbjct: 124 SVSFLEYGDASIGMRPGEILSMNDALYGMLLASANEVSYAIAESVGKKMGGGFETFIQKM 183
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + LG + +H+ NA+G+ HYTTA DMA++ F ++ Q I
Sbjct: 184 NERCEELGCTGSHWTNANGLHDENHYTTAHDMALIGS-AVYQFDKFREVTQTLNYTIPPT 242
Query: 199 KYPNTNWA------------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
N + ++ G KTG+T + +V A D L+AV+L
Sbjct: 243 NLVNESRTFQQNHKMLWVGAHYSYDYCTGGKTGYTDQAKTTLVTMADNADMQLVAVVL-- 300
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKIN----YIIKDFYQQNLSNEVPNISEEVCTTQKE 302
D+ + ++ + N + ++ F ++ +P +V + + E
Sbjct: 301 EDQGDVYVDTRAMFDYVYANFSKVFLNEHDKPDGVRKFKTEDAYVVLPKG-IDVSSLEHE 359
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
I + Q K + K + K
Sbjct: 360 ITITDRQNAAGKLTYLY-----KGQNVGTVEVK 387
>gi|169351202|ref|ZP_02868140.1| hypothetical protein CLOSPI_01981 [Clostridium spiroforme DSM 1552]
gi|169292264|gb|EDS74397.1| hypothetical protein CLOSPI_01981 [Clostridium spiroforme DSM 1552]
Length = 415
Score = 132 bits (331), Expect = 7e-29, Method: Composition-based stats.
Identities = 69/353 (19%), Positives = 134/353 (37%), Gaps = 25/353 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFL-----SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ + ++I++ ++ + S Y +D N+G ++ D PAS+
Sbjct: 4 KIYCLLISLVCTISLITPIRALDNSEEIGLSAQYAVAIDANSGLILYNKNMDERMYPASM 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA V ++ E S++ F+ G T+T + L I+ S
Sbjct: 64 TKVMTAIVALDMIENLDKTTVITQNDIDTVWETGASSANFEVGETVTYRDLLLGAILPSG 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
D A+A +LC +++ FV+ MN +K L L THF+N G+ HYTT DMA++
Sbjct: 124 ADATRALANNLCGSQEAFVEKMNECAKKLKLKDTHFVNTTGIHDDNHYTTVHDMALIVQY 183
Query: 177 IKTD------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + + + K N + G K+G+T A+ + +
Sbjct: 184 AVANPTFKEIYSKRYATSSNGLHQWVNKSVYNAKRSNINTDSIIGCKSGYTDAAKNCLSS 243
Query: 231 SAIQGDQSLIAV----ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
GD +I V + + + + +++ N + + + + +NL
Sbjct: 244 LDKVGDNEIIVVVGKAVNNDVKPKAAVQDTLDIVNYVSQNYSMQPILTKGTE---VKNLD 300
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDK-------ESHFIDFEKITLLKNK 332
V ++++ + +D E +K T + N
Sbjct: 301 ISVAKDNQKILIENQNYAMAFLPNGYNQDDLEFKYTFEKLEAPVKKGTKVGNL 353
>gi|319936455|ref|ZP_08010871.1| serine-type D-Ala-D-Ala carboxypeptidase [Coprobacillus sp. 29_1]
gi|319808570|gb|EFW05122.1| serine-type D-Ala-D-Ala carboxypeptidase [Coprobacillus sp. 29_1]
Length = 337
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 63/280 (22%), Positives = 113/280 (40%), Gaps = 14/280 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ +I + +S A Y ++DT V+ + + AS++K+M
Sbjct: 1 MKKIFFVICVFFMSV---TPIHAMDFSGKSYIVMDTFNKTVLEAKNEHYVQSVASISKIM 57
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA V L I + ++ S G + L + L L+++S ND A
Sbjct: 58 TAIVAIEN-----GNLDDEYEIGEEVNQAWGSGVYIHIGDHINLRDLLHGLLLRSGNDAA 112
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIK 178
IA+++ FV+ MN +K++G++ + F NA G+ G+ ++A DMA+L
Sbjct: 113 NVIAKNIGGDIPHFVEMMNKKAKDIGMNDSVFSNATGLDEEDAGNRSSAYDMALLMSYCS 172
Query: 179 TDFPQYMHYFQIKGLE-IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + G + N N + + G KTGFT + +V AI+ D
Sbjct: 173 QNPIFNDIVMKQTYKREDGGGTWHNKNRLLEEYEYCVGGKTGFTKKARRTLVTRAIKNDV 232
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
SL+ V L + + + F + + I
Sbjct: 233 SLVIVTLNCGND---FEFHKAKYEECFEKYQNMLVLPKGI 269
>gi|153823300|ref|ZP_01975967.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
gi|126519164|gb|EAZ76387.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae B33]
Length = 225
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 63/218 (28%), Positives = 105/218 (48%), Gaps = 14/218 (6%)
Query: 1 MRQFL--------VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + + +++ + S F A Y L+D ++G V+AE D
Sbjct: 1 MKKSILKSVLASSITLSITLSSTAFASPIVTPDAPQIAAKGYVLMDYHSGKVLAEKEMDT 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDN 106
+PASLTK+MT+YV+ +K L + ISKNA S + G+T+ + +
Sbjct: 61 KLSPASLTKMMTSYVIGQEVKRGNISLNDDVVISKNAWAKNFPDSSKMFVEVGTTVKVSD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ +I++S ND VA+AE + TE FV MN + +LG+ +HF N+HG+ Y+T
Sbjct: 121 LNRGIIIQSGNDACVAMAEHVAGTEDAFVDLMNAWASSLGMKNSHFTNSHGLDDPNLYST 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
D+A+L + D P+ + + G N N
Sbjct: 181 PYDLALLGQALIRDVPEEYAIYSEQKFTYNGITQYNRN 218
>gi|326938999|gb|AEA14895.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 428
Score = 132 bits (331), Expect = 8e-29, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 137/340 (40%), Gaps = 35/340 (10%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ LV I + L + P + + T +D TG V+
Sbjct: 5 KKILVFITVICLFLLTPMTLRAETNIGVNPEQVAPPPAEGPNVFSQFATTIDAKTGDVMY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 65 DKNAYHRAYPASTTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
HYTT DMA+++ + + Q M+ + + + G KTG
Sbjct: 180 NHYTTPYDMAMITKGVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGGKTG 239
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
FT + +V + +I+V++ A R + + F T + ++
Sbjct: 240 FTNEARNTLVLLNEKDGNRIISVVM-ASQRPEIYEDLKQMADYSFGQFTKQTVLDK---- 294
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
N + ++++V + ++ + E K+ ++
Sbjct: 295 ---HNWHQKTTYLNKDVSSELEKSAELMLKKDEGKNVKTI 331
>gi|30019428|ref|NP_831059.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|29894972|gb|AAP08260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
Length = 439
Score = 132 bits (330), Expect = 9e-29, Method: Composition-based stats.
Identities = 79/338 (23%), Positives = 133/338 (39%), Gaps = 31/338 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++FLV I + + P + + T +D TG V+
Sbjct: 16 KKFLVFITVICSFFLTPITLRAETNIGVNPEQVAPPPAEGPNVFSQFATTIDAKTGDVLY 75
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 76 DKNAYHRAYPASTTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 130
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG +HF+ +G+
Sbjct: 131 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDP 190
Query: 162 GHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
HYTT DMA+++ + + Q M+ + + + G KTG
Sbjct: 191 NHYTTPYDMAMITKGVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGGKTG 250
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---I 276
FT + +V + +I+V++ A R + + F T + ++
Sbjct: 251 FTNEARNTLVLLNEKDGNRIISVVM-ASQRPEIYEDLKQMAEYSFGQFTKQMVLDKHNWH 309
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
K Y N S E+ + E N T + A
Sbjct: 310 QKTTYLNKDVNSELEQSAELMLKKDEGKNVKTIFRAAS 347
>gi|296503088|ref|YP_003664788.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
gi|296324140|gb|ADH07068.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
Length = 338
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E F MN +K L L N+ G+ + + TTA D A
Sbjct: 124 NRSALALAEHIAGNEDNFTVLMNKKAKELQLLQPSPFLNSTGINNNTNKQSTTTAIDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ R+ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A GD LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|294786845|ref|ZP_06752099.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens
F0305]
gi|294485678|gb|EFG33312.1| serine-type D-Ala-D-Ala carboxypeptidase [Parascardovia denticolens
F0305]
Length = 430
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 62/307 (20%), Positives = 118/307 (38%), Gaps = 28/307 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++ TG V+ + D P AS+TKL+T Y+ + + + K +T + +S
Sbjct: 2 PHVAAAHAYAIEYQTGRVLLDQDGDEPAGIASMTKLITLYLTYKAVAQGKLTWSTKVHVS 61
Query: 84 KNASEYPPSNSTFKKGSTMTLDNA---LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ + + T + + ++ SAN A+++AE + +E KFV M
Sbjct: 62 DYSYQVATNPLTTSADMSRREFTVSDLVNAAMLPSANSAAISLAERIGGSEPKFVDLMRA 121
Query: 141 TSKNLGLSATHFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMH 186
+ G++ NA G+ + +A+DMAI++W + D+P +
Sbjct: 122 QVRAWGITDARIYNASGLNNSFLGSNIYPGSSSKAENALSAKDMAIVAWHLIHDYPSILT 181
Query: 187 YFQIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ GK TN + G DG+KTG T +G A+A+ +IAV
Sbjct: 182 ISKKTQASFGGKTISTTNHMLPGEEAAYPGVDGLKTGTTDEAGACFTATALVKGMRVIAV 241
Query: 243 ILGALDRN----TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+ A + R K +L + ++ + + + V + E
Sbjct: 242 VQKADKADADPLARFKAMKTLFDYCYQAYRMVIVVSQGKQ---YKGSTVAVQDGQERSVI 298
Query: 299 TQKEIIN 305
+
Sbjct: 299 AVADRDW 305
>gi|229029046|ref|ZP_04185145.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
gi|228732326|gb|EEL83209.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
Length = 407
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 75/327 (22%), Positives = 134/327 (40%), Gaps = 17/327 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG V+ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPAEGPNVFSQFATAIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 131 FAHMMNERAKQLGATDSHFVTPNGLHDPNHYTTPFDMAMITR-GVQKYPEILQAMNTKRT 189
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 190 TVTTSRQTVSIFNKSTYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 248
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E N
Sbjct: 249 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKATYLNKDIDSELEKSAELMLKKDEGKNVR 308
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKIT 334
T + A + + K +
Sbjct: 309 TIFRAASLDKDSL--YHKGIHRGEVVG 333
>gi|300362213|ref|ZP_07058390.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri
JV-V03]
gi|300354832|gb|EFJ70703.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus gasseri
JV-V03]
Length = 317
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 56/266 (21%), Positives = 107/266 (40%), Gaps = 21/266 (7%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + +D +VI + AS+TKL+TAY+ +KEKK T +
Sbjct: 52 ADQVNLNVKAAVAIDAKNENVIYAKNANQSLPIASMTKLLTAYLTLKAIKEKKISWDTTV 111
Query: 81 TISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ ++ + T+ ++KSAN+ A +A ++ +E F+
Sbjct: 112 SPTQEIINLSSNPDYAGVPLSLGQKYTVRELYDAALIKSANNAARMLAIAVSGSETNFLN 171
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHG-----------HYTTARDMAILSWRIKTDFPQYM 185
M + L + G+ + + +A DMAI++ ++ TD+P+ +
Sbjct: 172 QMRQQANKWKLHNVKLVTVDGLPEKNKNFLGMTTTIENKMSANDMAIIARKLVTDYPEVL 231
Query: 186 HYFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
++ + + N+N DG+KTG T +G + + ++ +
Sbjct: 232 STTKVAKSDFRNTLMTNSNKMLSGLSDYDPNYPVDGLKTGTTDGAGACFTCTMDKNNKRV 291
Query: 240 IAVILGALDRNTRNKVSASLLSMGFY 265
I VILGA + N R + LL+ F
Sbjct: 292 ITVILGAQNDNERFSETKKLLNYSFN 317
>gi|222095010|ref|YP_002529070.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
gi|221239068|gb|ACM11778.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
Length = 428
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 78/359 (21%), Positives = 138/359 (38%), Gaps = 35/359 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ LV I L + P + T +D TG ++
Sbjct: 5 KKILVFITAICLFFLTPMTLRAETNVGVNPEQVAPPPKEGPNVFSQFATTIDAKTGDILY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF--KKGST 101
+ H PAS+TK++TA ++ K T S+ A + SN + G T
Sbjct: 65 DKNAHHRAFPASMTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIELQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAEHIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKT 218
HYTT DMA+++ +P+ + K + + + + T+ + G KT
Sbjct: 180 NHYTTPYDMAMITR-GVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGGKT 238
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
GFT + +V + +I V++ A R + + F + ++
Sbjct: 239 GFTNEARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMADYSFGQFVKQTVLDKHSW 297
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
K Y + S EV + E N T + A + + K +
Sbjct: 298 HQKTTYLNKDIDSELEKSAEVMLKKDEGKNVRTIFRAASLDKDSL--YHKGIHRGEVVG 354
>gi|301052915|ref|YP_003791126.1| D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis CI]
gi|300375084|gb|ADK03988.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus biovar
anthracis str. CI]
Length = 428
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 75/333 (22%), Positives = 133/333 (39%), Gaps = 33/333 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ L I + L + P + T +D TG ++
Sbjct: 5 KKILAFITVICLFFLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFATTIDAKTGDILY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS+TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 65 DKNAHHRAFPASMTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKT 218
HYTT DMA+++ +P+ + K + + + + T+ + G KT
Sbjct: 180 NHYTTPYDMAMITR-GVQKYPEILQVMNTKRTTVTTSRQTVSIFNKSTYFENPYSIGGKT 238
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
GFT + +V + +I V++ A R + + F + ++
Sbjct: 239 GFTNEARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMADYSFGQFVKQTVLDKHSW 297
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
K Y + S E+ + E N T
Sbjct: 298 HQKTTYLNKDIDSELEKSAELILKKDEGKNVKT 330
>gi|291521155|emb|CBK79448.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
Length = 438
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 53/258 (20%), Positives = 102/258 (39%), Gaps = 20/258 (7%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
++D ++G ++ D PAS+TK++T ++ L IT S++
Sbjct: 65 LYSSAACVIDVDSGEILYYKNMDDRHYPASITKVLTGLLLIENA-----NLDDTITFSQD 119
Query: 86 AS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
Y N G +T+++AL +++ SAN++ A+ + + F MN
Sbjct: 120 CWNGLNYYNDMNIGILDGEQLTVNDALHAILMSSANEVCNGAAKFVSGSVSAFCDLMNER 179
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG---- 197
+K LG + THF+N +G+ HYT+A DMA++S + +
Sbjct: 180 AKALGCTNTHFVNPNGLHDPDHYTSAHDMALISREAIQNPIFREITGCTEYTVASTNLRP 239
Query: 198 ------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
K+ + + G KTG+T + +V A + +L V++
Sbjct: 240 EGFPLSHKHQMLMYTKYHYDACIGGKTGYTSEAKNTLVTYAEKDGHTLACVVM-ENSDGH 298
Query: 252 RNKVSASLLSMGFYNKTD 269
+ + + F +
Sbjct: 299 IYPDTINAMDYCFDHYDQ 316
>gi|167755756|ref|ZP_02427883.1| hypothetical protein CLORAM_01271 [Clostridium ramosum DSM 1402]
gi|167704695|gb|EDS19274.1| hypothetical protein CLORAM_01271 [Clostridium ramosum DSM 1402]
Length = 411
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/351 (17%), Positives = 132/351 (37%), Gaps = 20/351 (5%)
Query: 2 RQFLVIIA--MAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
++ L + + +++ + P ++ + Y +D +G V+ D PAS
Sbjct: 3 KKILSFLLVGICLIATLTPIRALENSEDIGLTCDYAVAIDAKSGLVLYNKNMDERMYPAS 62
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MT + + + K + E S++ F+ G T+T ++ L I+ S
Sbjct: 63 MTKVMTVILALELMDDMKKTTVITQSDIDTVWETGASSANFEVGETVTYEDLLYGAILPS 122
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
D A+A +LC +++ FV MN ++ L L THF+N G+ HYTT DMA++
Sbjct: 123 GADATRALANNLCGSQEAFVDKMNELAQKLNLKDTHFVNTTGIHDENHYTTVHDMALIVQ 182
Query: 176 RIKTD------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ + Q + K N A G K+G+T + +
Sbjct: 183 YAIQNEDFKNIYAQRYKTSSNGLHQWVNKSMYNAKRAKINVDDILGCKSGYTNEAKSCLS 242
Query: 230 ASAIQGDQSLIAVILGALDRNTRN----KVSASLLSMGFYNKTDRKKINYIIK----DFY 281
+ D +I ++ +++ + + + +++ + + + + K D
Sbjct: 243 SLNRVNDNEIITIVGHSVNNDVKTHAAVSDTLDIMNYVGQHYSLQNILTKGAKVRTLDVT 302
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + + ++ + +K + +
Sbjct: 303 LAKDEQKIAITNLNDVSAFLPNDFNKDDLEYKYSFKKLEAPVKKGEKVGDL 353
>gi|150016752|ref|YP_001309006.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
NCIMB 8052]
gi|149903217|gb|ABR34050.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
NCIMB 8052]
Length = 284
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 70/292 (23%), Positives = 124/292 (42%), Gaps = 27/292 (9%)
Query: 1 MRQ-------FLVIIAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDH 49
MR+ + +I + + + LD + V+ E
Sbjct: 1 MRKGTSKCTSLIALILICTQIICIDANAKGKGNNLRVNARSAIALDKESHAVLFEQNAYE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS TK++T+ + L + ISK A+ S +K+ +TL +
Sbjct: 61 IVPMASTTKILTSLIAIEQ-----GNLDKKVVISKKAAGIRGSTVGYKENEEITLRELVF 115
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
L+ KS ND A+AIAE L + + F + MN+ ++ +G+ +HF + HG+ HY++A D
Sbjct: 116 GLMFKSGNDAAIAIAEELGGSIEGFAEIMNHYARGIGILDSHFESPHGLDSSKHYSSAYD 175
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGF 226
+AIL+ + + + K Y N N + GA+G+KTG+T +G
Sbjct: 176 LAILTAKGMDYDLFREVVGSKQISKEKYNFTRDYNNINKILWRIPGANGVKTGYTGQAGK 235
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM-----GFYNKTDRKKI 273
+V+S + +I V+L D R V+ + + F N T ++ +
Sbjct: 236 CLVSSINNNGKDVIIVVLNCPD---RWNVTEKIYNYVLEKVAFGNHTVKELV 284
>gi|312862585|ref|ZP_07722826.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
vestibularis F0396]
gi|311101845|gb|EFQ60047.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
vestibularis F0396]
Length = 423
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 67/369 (18%), Positives = 142/369 (38%), Gaps = 40/369 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ + ++ +L + A + ++ NTG ++ E
Sbjct: 6 MKKLITLMMTFLLCLGSVAPAFAADKKKGYDAAAKHAIAVEANTGKILYEKDATTSTGIG 65
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLL 111
S+ KL+TAY+V+ + + + + IS E ++ T+ L
Sbjct: 66 SIIKLLTAYMVYKAVDQGDLKWNSKVDISDYPFELTVSAGVSNIPLDARKYTVKQLLDAT 125
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------ 159
++ SAN ++A+AE + TE KFV M K+ G++ +NA G+
Sbjct: 126 LIASANSASIALAEEIGGTESKFVDMMKAQLKDWGITDAKIVNASGLNNSYLGDNIYPGS 185
Query: 160 --QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA----VGTFLG 212
+ +A+D+A+++ + ++P+ + + + K +N+ G
Sbjct: 186 KSDEENTMSAKDVAVIAQHVVKEYPEILDITKKTEADFDGVNKLKTSNYMLKGQPSYRKG 245
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKT 268
DG+KTG T +G + VA + + S+I VIL + + +T R + LL+ Y+
Sbjct: 246 VDGLKTGTTDLAGASFVAHSNESGMSIITVILNSDNTDTDDYARFTATNDLLNYVVYHWE 305
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK------ESHFID 322
+ ++ ++ + S++V K N ++ +K
Sbjct: 306 SKTIAKKGQA--IGKSQASVLDGKSKQVTAVAKSDFNIIQKIDANNNKHIKVTTNQMQAP 363
Query: 323 FEKITLLKN 331
+ +
Sbjct: 364 VKAGDKVGT 372
>gi|297196040|ref|ZP_06913438.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
ATCC 25486]
gi|297153041|gb|EFH32114.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
ATCC 25486]
Length = 367
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 52/283 (18%), Positives = 98/283 (34%), Gaps = 21/283 (7%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
E + + D +TG V+A + PAS K + A L + +T
Sbjct: 37 PEDVSALSWLVADADTGDVLAAHDAHRRLPPASTIKTLFALTALPHLAD---APPHKVTE 93
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ A S+ + L + S+ + AV + + + M +
Sbjct: 94 EELAGVGEGSSLVGIAPGRTYTMDDLWRGVFLSSGNDAVRVLAEMNGGWAATAEQMQAKA 153
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ--------IKGLE 194
+ LG TH ++ G + G ++A D+A+ TD + +
Sbjct: 154 RALGAFDTHVVSPDGYDEPGQVSSAFDLAVFGRAGLTDPQFASYASTVDAPFPGGTRDDG 213
Query: 195 IKGKKY--PNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
Y NTN V + G G+K G+T +G +VA+A + ++L+ +L
Sbjct: 214 SPTWTYGIRNTNRLLTGADGVERYPGIIGVKNGYTSNAGNTLVAAARRDGRTLVVTVLNP 273
Query: 247 LDRNTR--NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + SLL GF + + + ++
Sbjct: 274 QSGGGHKVYEEARSLLDWGFSAADRVEPVGSLEPPVVEKAPPA 316
>gi|307243700|ref|ZP_07525840.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
stomatis DSM 17678]
gi|306492909|gb|EFM64922.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
stomatis DSM 17678]
Length = 419
Score = 132 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 79/349 (22%), Positives = 142/349 (40%), Gaps = 27/349 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK-LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ + + + +L ++ + DT+T ++ E D ASLTK+M
Sbjct: 10 KVLAIGLCLPLLMQARAGAEQRFSDSYSRSAIVSDTDTNRIVYEKNADQVVPMASLTKMM 69
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T + F + +KK +TI + +N G ++L+ +K +++ SAND A
Sbjct: 70 TLLLTFDAISQKKVDYKDIVTILPSDVNRVGTNIKLTAGEQISLEELMKGMMIVSANDAA 129
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----------GHYTTARDM 170
+AI+ + T KFV+ MN +K +G+ T F N +G+ + T+ARD+
Sbjct: 130 LAISHHVSTTYSKFVEDMNAKAKEIGMENTVFYNPNGLPTSINVGGKPVGVENKTSARDV 189
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKY---PNTNWAVGTFLGADGMKTGFTCASGFN 227
+LS + +P + + KK NTN + DG+KTGFT A+G+
Sbjct: 190 LVLSKYLYDKYPNQLTAITNMSSYVNPKKAINEENTNPLLPLIANVDGLKTGFTGAAGYC 249
Query: 228 IVASAIQGD-------QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---II 277
+ S LI V LGA + R S + L + + I
Sbjct: 250 LAYSMKIDKGNGNDSANRLIGVSLGASSKENRKLASYNTLVYINNHYKTKYLYKKNTTID 309
Query: 278 KDFYQQNLSNEVPNI-SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ + + ++++C QK+ +K + F D ++
Sbjct: 310 RPVINGIPFIKFDLVANKDLCLIQKDTEKLKKTIKY--NSVDIFADNDQ 356
>gi|29832456|ref|NP_827090.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
MA-4680]
gi|29609575|dbj|BAC73625.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
avermitilis MA-4680]
Length = 446
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 48/286 (16%), Positives = 99/286 (34%), Gaps = 22/286 (7%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFLK 70
+ + + + + D +G V+A PAS K++ T F +
Sbjct: 69 VQVSGASGLPKKLTARAWLVADHESGEVLAAYNAHRRLAPASTLKMLFADTVLKKFERAE 128
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ I +S T + L L+ AV + +
Sbjct: 129 RHTVTADDLVGIPAGSSLVGVQAGTTYTVEQLWLGVFLRSGND------AVHVLSHMNGG 182
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+ V M +++L TH ++ G G ++A D+ + + D + Y
Sbjct: 183 VAETVAQMQAKAEDLQALDTHVVSPDGFDHKGQLSSAYDLTLFARHGLAD-ADFRDYCAT 241
Query: 191 KGLEI---KGKKYPNTN--------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + K + N W + T+ G G+K G+T +G +A +G ++L
Sbjct: 242 RTADFPAGRKKTFQIQNTDRLLTGAWGMETYDGLIGVKNGYTSHAGNTFTGAATRGGRTL 301
Query: 240 IAVILGALD-RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
+ ++ N + +A LL GF + K + ++ +
Sbjct: 302 LVTVMHPKSGGNGVYEETAKLLDWGFAHAASAKPVGTLVDPISEGG 347
>gi|269215526|ref|ZP_06159380.1| serine-type D-Ala-D-Ala carboxypeptidase [Slackia exigua ATCC
700122]
gi|269131013|gb|EEZ62088.1| serine-type D-Ala-D-Ala carboxypeptidase [Slackia exigua ATCC
700122]
Length = 456
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 76/339 (22%), Positives = 122/339 (35%), Gaps = 52/339 (15%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI-------------------------AETNKLPYYTLLD 35
MR+ ++ I A++ I + +
Sbjct: 12 MRRCVLSIVAALVLAIGIASPAWADVRPSTDLVLGSTEASRGLSIDNSPDIDAEAALAVT 71
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ G + D + AS+TK+MTA V LT IT+S A S++
Sbjct: 72 YD-GRELFARNADSEYKIASITKIMTAIVALDNA-----SLTDTITVSDKAGTTIGSSAQ 125
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAI---------AESLCKTEKKFVQHMNNTSKNLG 146
+ G TM+L AL+ L+V S ND AVAI ++ E FV MN + +G
Sbjct: 126 LRPGDTMSLKTALQGLLVPSGNDAAVAIAETVGARLVTDAQPDPEGAFVDAMNARAAEIG 185
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI------------KGLE 194
+ T F N HG+ G+ + A A ++ Q + I K
Sbjct: 186 CTDTLFTNPHGLDSDGYESDAHSTAHDVAKMTAYAMQNDTFRSIVGGGDVTVTVTQKDGT 245
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ +T+ +G + G G+KTG + + + + S+ V+LG+ R
Sbjct: 246 QRAITLISTDELLGVYDGMVGVKTGTGDVALNCFAGACERTEDSIYTVVLGSSTEEGRFD 305
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ASLL F N D IN V ++
Sbjct: 306 ATASLLDWAFDNIQDVDLINSPYALDRSGANVPVVAEVA 344
>gi|227524973|ref|ZP_03955022.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii
ATCC 8290]
gi|227087885|gb|EEI23197.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii
ATCC 8290]
Length = 421
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 62/344 (18%), Positives = 121/344 (35%), Gaps = 34/344 (9%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ +D +TG ++ E P AS++KLMT Y+V ++E K
Sbjct: 27 AATVSTSQPVIYAKSAIAVDADTGQILYEKNAHQPLAIASISKLMTVYIVQKQIQEGKLS 86
Query: 76 LTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ IS ++ ++ + + + LK ++ SAN A+A+ + +
Sbjct: 87 WNDQVKISPAVAKLSTASGLTNVPLKSGKSYKVRDLLKAALIVSANAAAIALGQKVSGNA 146
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMAILSWRI 177
+ F M T++ LG+ F NA G+ + +A+D+A+L+ R+
Sbjct: 147 QNFADKMTKTARGLGIKDAKFYNAAGLTNKLTGSLMLKKDSPNAENLMSAKDIALLASRL 206
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASA 232
+ FP + + G Y N + +G+KTG + +G S
Sbjct: 207 EESFPGLTKITRQTQMNFSGNSYAGHNQLLDDRQIAKGAVVNGLKTGTSDEAGACFAGST 266
Query: 233 IQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKI------NYIIKDFYQ 282
+ ++ V+LGA R +A L+ + F+ + K
Sbjct: 267 TYHGRRIVTVVLGARNNSATDPARFIQTAKLMGIVFHKQHPVKLAMHVHINELGTTKVPD 326
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQM-KEAKDKESHFIDFEK 325
+ + + I+ K K + +K
Sbjct: 327 GKQTKTKLVTKKTTWVWVPKSISQKQVKGKFVKTPKKLNAPIKK 370
>gi|183981214|ref|YP_001849505.1| penicillin-binding protein DacC [Mycobacterium marinum M]
gi|183174540|gb|ACC39650.1| penicillin-binding protein DacC [Mycobacterium marinum M]
Length = 415
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/283 (20%), Positives = 99/283 (34%), Gaps = 12/283 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + + D ++G +IA P PAS+ K++ A V
Sbjct: 89 IIAAPDTPPVPGDVSAEAWLVGDLDSGAIIAARDPHARHRPASIIKVLVAMVSIKE---- 144
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ + + S + G T++ L L++ S ND A A+A L +
Sbjct: 145 -LNQNKAVPGTNDDSAAEGTKVGVNAGGMYTVNQLLHGLLMHSGNDAAHALAIQLGGMQT 203
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-----YMHY 187
+ +N + LG T G+ G T+A D+ + + +
Sbjct: 204 AL-EKINMLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPIFADIVATRTF 262
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GA 246
E G + N N + + GA G KTG+T +G V +A + L AV+L G
Sbjct: 263 DFPGHGEHPGYELENDNHLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLFAVLLHGT 322
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
+ +A LL GF + + I D
Sbjct: 323 RQPIAPWEQAAHLLDYGFSTAQGTQIGSLIEPDPSLVAPKETP 365
>gi|283779427|ref|YP_003370182.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pirellula
staleyi DSM 6068]
gi|283437880|gb|ADB16322.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pirellula
staleyi DSM 6068]
Length = 677
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 70/276 (25%), Positives = 121/276 (43%), Gaps = 19/276 (6%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ + D TG +IA D + AS TKLMTA VV E ++L +TI
Sbjct: 402 PPVVSCKSWGIADAKTGAIIASYEEDDKLDIASTTKLMTALVVARMAGENASLLDEVVTI 461
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL----------CKTEK 132
S A P S++ ++G + L L L++ S ND +VA+AE +
Sbjct: 462 SAAADATPGSSAWIREGEKLQLRELLYGLLLPSGNDASVAVAEHIGSKLMLDDRKPAPLD 521
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR--------IKTDFPQY 184
+F+ MN + LG+S T + N HG+ + GH+++ RD L+ +
Sbjct: 522 RFIAEMNKVAAELGMSDTSYKNPHGLTEEGHFSSVRDQLKLARTIVGTPMLAPYFEARIR 581
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ + + + N+N + + G G+KTG T A+G +V+ QG+ L+ V+L
Sbjct: 582 GARIESEMGYQRNVAWKNSNRLLD-YEGYRGLKTGTTDAAGACLVSHFQQGEVDLVCVVL 640
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
G+ + R + +LL ++ ++
Sbjct: 641 GSTSSDGRYVDTRNLLRWAAKHRPAPAPVDTAPAPV 676
>gi|298249991|ref|ZP_06973795.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
gi|297547995|gb|EFH81862.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
Length = 321
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/262 (26%), Positives = 110/262 (41%), Gaps = 14/262 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ L+D +TG+V+ AS TK+MTA + +
Sbjct: 49 VLTVRGTPPAIGSKIAYLVDDDTGNVLVNVKGRERVPMASTTKIMTAILTIDKADLNQV- 107
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+T A + SN+ G + L + L L++ S +D A AIA+S+ ++ +FV
Sbjct: 108 VTIKQDAVDEAKVHNGSNAQLVIGDQIRLKDLLYALMLPSGDDAATAIADSVAGSQTQFV 167
Query: 136 QHMNNTSKNLGLSATHFMNAHGV--------VQHGHYTTARDMAILSWRIKTDFPQYMHY 187
MN +K L L TH++NA G+ HYTT D+ L+ +
Sbjct: 168 TMMNAYAKQLKLQNTHYINADGLTYEGKDGKPDPNHYTTGEDLVKLTRYALRNPLFAQIV 227
Query: 188 FQIKGL-----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
K + + T+ + T+ G G+KTGFT +G+ +V SA L+
Sbjct: 228 QLQKYVLPASGVHHAYTWETTDTMLSTYAGLTGVKTGFTGEAGYCLVFSAYSSGHRLVGA 287
Query: 243 ILGALDRNTRNKVSASLLSMGF 264
+L A D R K ++SLL F
Sbjct: 288 VLDAKDEEERFKDASSLLDWAF 309
>gi|327440835|dbj|BAK17200.1| D-alanyl-D-alanine carboxypeptidase [Solibacillus silvestris
StLB046]
Length = 324
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/316 (21%), Positives = 124/316 (39%), Gaps = 16/316 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M+++ V I + + A Y ++D G + ASLTK+
Sbjct: 1 MKKWFVSIVVMFVFLSGSSQIQA---ASNSYVVIDAENGRTLMGVNEHARLPIASLTKIW 57
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA VV + LT + ISK AS S+ + T T+D L L+++S ND A
Sbjct: 58 TALVVLENSE-----LTDEVVISKEASLVEGSSIYLLENETYTIDYLLHGLMMQSGNDAA 112
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+AE + + + FVQ MN ++ L T F N G+ H ++A + A + +
Sbjct: 113 TALAEHVGGSVEGFVQLMNEKAELYQLHETTFTNPTGLHNEAHLSSAYNTAKMLQIAMMN 172
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
G+++ N + + +GA KTG+T +G + + +S +
Sbjct: 173 P--EFRKIASTQNFSDGRQWRNKHRLMHEKIGAIAGKTGYTKVAGRTLATFFEREQKSFV 230
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
V + + + +L N + + Y N + ++ +
Sbjct: 231 VVTINEGND---WNIHRNLADFIDNNFEQQTIVKKGK---YNANGLAIELDEPFQMLLHK 284
Query: 301 KEIINYNTQMKEAKDK 316
KE N+ +K ++ K
Sbjct: 285 KERPNFEHIVKVSRLK 300
>gi|126434530|ref|YP_001070221.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
gi|126234330|gb|ABN97730.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
Length = 291
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 63/286 (22%), Positives = 106/286 (37%), Gaps = 28/286 (9%)
Query: 1 MRQFLVIIAMAMLSN-------------IFPFLSIA-ETNKLPYYTLLDTNTGHVIAENY 46
M + + + A+ + + I P S+ + + D +TG V+A
Sbjct: 1 MGRLVSLFAIVLAALGVVAAPVAAADIDIQPVGSVPIPAGPAEAWIVADMDTGQVLAGRN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ PAS K + A VV L T I + + + + G T
Sbjct: 61 DTTRYAPASTIKTLLAQVVLDE-----VPLDTTIAAEEADTRVECNCAGVAPGHVYTARQ 115
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH--Y 164
L+ L++ S ND A +A L + + MN + LG T+ + G+ G +
Sbjct: 116 LLEALLLVSGNDAANTLARMLGGMDSAVAK-MNAKAAQLGAHGTNVVTPSGLDGPGMPFW 174
Query: 165 TTARDMAILSWRIKTD--FPQYMHYFQIKGLE-IKGKKYPNTNWAVGTFLGADGMKTGFT 221
+TA D+A++ + F Q N N + + GA G KTGFT
Sbjct: 175 STAHDLAVIFRAAMANPVFVQITAMPSTVFPTKAGEAVLVNQNELLHRYPGAIGGKTGFT 234
Query: 222 CASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGF 264
+ V +A + + L+ V++ T +A LL GF
Sbjct: 235 DIARKTFVGAAQRDGRRLVVVLMHGLVKEGGPTYWDQAAGLLDWGF 280
>gi|108798930|ref|YP_639127.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS]
gi|119868045|ref|YP_937997.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
gi|108769349|gb|ABG08071.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS]
gi|119694134|gb|ABL91207.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
Length = 291
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 63/286 (22%), Positives = 106/286 (37%), Gaps = 28/286 (9%)
Query: 1 MRQFLVIIAMAMLSN-------------IFPFLSIA-ETNKLPYYTLLDTNTGHVIAENY 46
M + + + A+ + + I P S+ + + D +TG V+A
Sbjct: 1 MGRLVSLFAIVLAALGVVAAPVAAADIDIQPVGSVPIPAGPAEAWIVADMDTGQVLAGRN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ PAS K + A VV L T I + + + + G T
Sbjct: 61 DTTRYAPASTIKTLLAQVVLDE-----VPLDTTIAAEEADTRVECNCAGVAPGHVYTARQ 115
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH--Y 164
L+ L++ S ND A +A L + + MN + LG T+ + G+ G +
Sbjct: 116 LLEALLLVSGNDAANTLARMLGGMDSAVAK-MNAKAAQLGAHGTNVVTPSGLDGPGMPFW 174
Query: 165 TTARDMAILSWRIKTD--FPQYMHYFQIKGLE-IKGKKYPNTNWAVGTFLGADGMKTGFT 221
+TA D+A++ + F Q N N + + GA G KTGFT
Sbjct: 175 STAHDLAVIFRAAMANPVFAQITAMPSTVFPTKAGEAVLVNQNELLHRYPGAIGGKTGFT 234
Query: 222 CASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGF 264
+ V +A + + L+ V++ T +A LL GF
Sbjct: 235 DIARKTFVGAAQRDGRRLVVVLMHGLVKEGGPTYWDQAAGLLDWGF 280
>gi|323486820|ref|ZP_08092138.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
WAL-14163]
gi|323399833|gb|EGA92213.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium symbiosum
WAL-14163]
Length = 532
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 79/331 (23%), Positives = 134/331 (40%), Gaps = 30/331 (9%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + ++D N+G VI + PAS+TK++TA +V
Sbjct: 23 VLASADWPDNVSIESDAGIIMDANSGAVIYGKNIHATYAPASITKVLTALIVLERC---- 78
Query: 74 AMLTTPITISKNASEYPPSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ +T S+NA SNS+ + G T ++ + L L++KSAN+ A A+AE + T
Sbjct: 79 -SMDETVTFSQNAVYNVESNSSSAGYDTGDTASVKDCLYALLLKSANEAANALAEHISGT 137
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-------Q 183
++F MN + LG +HF N G+ HY +A DMA+++ +
Sbjct: 138 TEEFAVLMNEKAAELGCQDSHFSNPSGLNDENHYVSAYDMALITKAAFENADFSKIVATT 197
Query: 184 YMHYFQIKGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
Y K K NW G KTG+T + +V A QG+
Sbjct: 198 YYELPPNKKNPEGQGISPGNKMIKKNWPDQYRPDVIGGKTGYTSIALNTLVIGAQQGETK 257
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+ VIL + + +LL+ GF N + +Y K F ++ + T
Sbjct: 258 FVTVILHSSGTQ--YSDTKALLNFGFNNFKAVRIADY-DKTFSTIGDDLKISG----LPT 310
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
++K+++ + K DF + T+
Sbjct: 311 SEKQVLTIDPDSKI---ILPVTADFSETTVS 338
>gi|228901108|ref|ZP_04065313.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
4222]
gi|228858534|gb|EEN02989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
4222]
Length = 338
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E F MN +K L L N+ G+ + TTA D+A
Sbjct: 124 NRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNDTNKQSTTTAIDVAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ R+ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAARLIKDFPDVLNITKLTSYQFSFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A D LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLEDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|228907005|ref|ZP_04070872.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
200]
gi|228852753|gb|EEM97540.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
200]
Length = 405
Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats.
Identities = 73/306 (23%), Positives = 124/306 (40%), Gaps = 13/306 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG V+ + H PAS+TK++TA ++ K
Sbjct: 14 VAPPPAEGPNVFSQFATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTK----- 68
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 69 PEDQFAFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 128
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 129 FANMMNEKAKQLGARDSHFVTPNGLHDPNHYTTPYDMAMITKGVQKYPEILQAMNTKRTT 188
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + G KTGFT + +V + +I V++ A R
Sbjct: 189 VTTSRQTVSIFNKSNFFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRPE 247
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F + ++ K Y N S E+ + E N T
Sbjct: 248 IYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDINSELEKSAELMLKKDEGKNVKT 307
Query: 309 QMKEAK 314
+ A
Sbjct: 308 IFRAAS 313
>gi|218232010|ref|YP_002367234.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
B4264]
gi|229145140|ref|ZP_04273532.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
gi|218159967|gb|ACK59959.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264]
gi|228638338|gb|EEK94776.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
Length = 338
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E F MN +K L L N+ G+ + + TTA D A
Sbjct: 124 NRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNNTNKQSTTTAIDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ R+ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A GD LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|312862810|ref|ZP_07723050.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
vestibularis F0396]
gi|322516764|ref|ZP_08069670.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
vestibularis ATCC 49124]
gi|311101670|gb|EFQ59873.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
vestibularis F0396]
gi|322124686|gb|EFX96138.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
vestibularis ATCC 49124]
Length = 448
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 74/386 (19%), Positives = 139/386 (36%), Gaps = 52/386 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------------KLPYYTLLDTNTGHVIAE 44
M++ +V I ++ + P LS A+ + L+D TG V+ E
Sbjct: 1 MKKKIVSILLSACLALAPSLSSADELMDITRAAGYTEATEAYRPKSTLLIDGTTGDVLWE 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
D +PAS++K MT Y+VF + + + T IT + +N
Sbjct: 61 ENADEIRDPASMSKAMTLYLVFEAMSKGEISEDTVITATPTDQAIADIYEISNNKIVAGV 120
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG-- 157
+ + S + K++ MN SK LG++ T + NA G
Sbjct: 121 DYTVSELITMTAVPSSNVTTVMLANYLTNNNPDKWLDMMNEKSKELGMTNTKWFNASGAV 180
Query: 158 -------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AI+++ +P+ + Y + +K
Sbjct: 181 AVAFKGYYSPQRYDNNQTNQTTARDLAIMTYNFIKKYPKILKYTSKPVVTVKKGTPYEET 240
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LDR 249
+ + G DG+KTG + FN + + +G+Q +IAVI+G+
Sbjct: 241 FETYNYSIPGAKYGIDGVDGLKTGSSPEGAFNYIDTIKRGNQRMIAVIMGSGDWSDQTGE 300
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
R+ +L+ + + + +K ++ ++ N ++ V + I+
Sbjct: 301 EIRHTFGNALVEKMYKDFSYKKVLSKGEQEI-DGKKYNVEKDVYATVKKGKDPKISVKDD 359
Query: 310 MKEAKDKESHFIDFEKITLLKNKITK 335
+ K T +K K
Sbjct: 360 QIVIDNGLKTVSPNIKATSVKATKVK 385
>gi|229150753|ref|ZP_04278967.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
gi|228632840|gb|EEK89455.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
Length = 338
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/281 (24%), Positives = 121/281 (43%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L +K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNNRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E F MN +K L L N+ G+ + + TTA D A
Sbjct: 124 NRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNNTNKQSTTTAIDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ R+ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A GD LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|322517677|ref|ZP_08070540.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
vestibularis ATCC 49124]
gi|322123665|gb|EFX95257.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
vestibularis ATCC 49124]
Length = 432
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/369 (18%), Positives = 144/369 (39%), Gaps = 40/369 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ + ++ +L + A + ++ NTG ++ E
Sbjct: 15 MKKLITLMMTFLLCLGSVAPAFAADKKKGYDAAAKHAVAVEANTGKILYEKDATTSAGIG 74
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLL 111
S+TKL+TAY+V+ + + + + IS E ++ T+ L
Sbjct: 75 SITKLLTAYMVYKAVDQGDLKWNSKVDISDYPFELTVSAGVSNIPLDARKYTVKQLLDAT 134
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------ 159
++ SAN ++A+AE + TE KFV M K+ G++ +NA G+
Sbjct: 135 LIASANSASIALAEEIGGTESKFVDMMKAQLKDWGITDAKIVNASGLNNSYLGDNIYPGS 194
Query: 160 --QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-KGKKYPNTNWA----VGTFLG 212
+ +A+D+A+++ + ++P+ + + + K +N+ G
Sbjct: 195 KSDEENTMSAKDVAVIAQHVVKEYPEILDITKKTEADFDGVNKLKTSNYMLKGQPSYRKG 254
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKT 268
DG+KTG T +G + VA + + S+IAVIL + + +T R + LL+ Y+
Sbjct: 255 VDGLKTGTTDLAGASFVAHSNESGMSIIAVILNSDNTDTDDYARFTATNDLLNYVVYHWE 314
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK------ESHFID 322
+ ++ ++ + S++V K N ++ +K
Sbjct: 315 SKTIAKKGQA--IGKSQASVLDGKSKQVTAVAKSDFNIIQKIDANNNKHIKVTTNQMQAP 372
Query: 323 FEKITLLKN 331
+ +
Sbjct: 373 VKAGDKVGT 381
>gi|268319018|ref|YP_003292674.1| hypothetical protein FI9785_527 [Lactobacillus johnsonii FI9785]
gi|262397393|emb|CAX66407.1| dacA [Lactobacillus johnsonii FI9785]
Length = 308
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/299 (20%), Positives = 121/299 (40%), Gaps = 35/299 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
+++L +I++ + + F + + ++ G I
Sbjct: 10 KKYLWLISLVIAAICFFVWKNNFNSNRMPSNYHADQVDLNVKAAVAINAKDGSTIYAKNA 69
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
+ AS+TKL+T Y+ +KEKK T +T ++ ++ + G T
Sbjct: 70 NQSLPIASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDLGSNPDYASVPLRLGQKYT 129
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-- 161
+ ++KSAN+ A +A ++ +E F+ M+ ++ L+ F+ G+
Sbjct: 130 VRELYYAALIKSANNAARLLAIAVSGSETNFLNQMSQQARKWKLNNAKFVTVDGLPDKKK 189
Query: 162 ---------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ +A DMAI++ ++ T++P+ ++ ++ + N N +
Sbjct: 190 NFLGMTTTVENKMSANDMAIIARKLITNYPEILNTTKLARAYFQNTLMINNNKMLNGLSY 249
Query: 213 ------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
DG+KTG T +G + + + +I VILGA + N R + LLS F
Sbjct: 250 YDSIFPVDGLKTGTTDGAGSCFTCTVNKNGKRVITVILGAENDNERFVETKKLLSYCFN 308
>gi|228939672|ref|ZP_04102254.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228972534|ref|ZP_04133140.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228787171|gb|EEM35144.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228820010|gb|EEM66053.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326940266|gb|AEA16162.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 338
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/281 (24%), Positives = 118/281 (41%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF----MNAHGVVQHGHYTTARDMAI 172
N A+A+AE + TE F MN +K L L + TTA D A
Sbjct: 124 NRSALALAEHIAGTEDNFTILMNKKAKELQLLQPSPFLNSTGINHDTNKQSTTTAIDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ R+ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A GD LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|50083539|ref|YP_045049.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter sp. ADP1]
gi|49529515|emb|CAG67227.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter sp. ADP1]
Length = 352
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/247 (24%), Positives = 102/247 (41%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + ++D TG V+ + ASLTKLMTA V + + T
Sbjct: 101 AAQPSVNARAALVMDAQTGEVLYSKNTNTSMPIASLTKLMTAVVTSDARLDMSEEI-TLE 159
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I + S+ST + G M L ++KS N A A+A + FV MN
Sbjct: 160 QIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVAAMNA 219
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
++ LG+++TH++ + G+ + ++ARD+ IL + + + +
Sbjct: 220 KARQLGMTSTHYVESSGL-DPHNVSSARDLGILVS-AASQYGLIRQFSTTPSYDFNLGYR 277
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTG+ +G +V + + V+LGA RN
Sbjct: 278 VLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVVVLLGASSTQARNND 337
Query: 256 SASLLSM 262
+ +LL+
Sbjct: 338 ATNLLNW 344
>gi|295101852|emb|CBK99397.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
L2-6]
Length = 319
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 77/283 (27%), Positives = 116/283 (40%), Gaps = 20/283 (7%)
Query: 2 RQFLVIIAMAMLSNIF--PFLSIAETNKL----PYYTLLDTNTGHVIAENYPDHPWNPAS 55
R +++ A ++ F A + L D +TG + E PD P AS
Sbjct: 9 RLLALVLTAAFMTTAALSGFAVYAMPIQAAYPQESIYLFDADTGEALVEQNPDLPRCVAS 68
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY---PPSNSTFKKGSTMTLDNALKLLI 112
LTK+MTA +V + A +T P +++ + G T+ + + ++
Sbjct: 69 LTKMMTALLVLESGTDLSAGITIPASLTPELQSIRANRGHTIGLQAGETVRRIDMMYAML 128
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ SAND A +A + F MN + LG +ATHF HG+ G+Y+TARDMA
Sbjct: 129 LPSANDAASVLAVDTSGSLAAFAAQMNVRASQLGCTATHFTCPHGLYDGGNYSTARDMAK 188
Query: 173 LSWRIKTD--FPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLG-----ADGMKTGFTC 222
++ D + Q K TN + G A GMKTGFT
Sbjct: 189 IALACYADPTYRQIADTMSYKLPATNVHPARTVTTTNKLLQPGSGYYRSDAHGMKTGFTT 248
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+G V A Q + VILG+ +N + +A L F
Sbjct: 249 QAGRCFVTFAQQDGHTYGLVILGSNSQNI-FREAAELFDWAFT 290
>gi|228964330|ref|ZP_04125449.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228795427|gb|EEM42915.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 407
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 74/306 (24%), Positives = 124/306 (40%), Gaps = 13/306 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG V+ + H PAS TK++TA ++ K
Sbjct: 16 VAPPPAEGPNVFSQFATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 131 FANMMNEKAKQLGARDSHFVTPNGLHDPNHYTTPYDMAMITKGVQNYPEILQAMNTKRTT 190
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + G KTGFT + +V + +I V++ A R
Sbjct: 191 VTTSRQTVSIFNKSNFFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRPE 249
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F + ++ K Y N S E+ + E N T
Sbjct: 250 IYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDINSELEKSAELMLKKDEGKNVKT 309
Query: 309 QMKEAK 314
+ A
Sbjct: 310 IFRAAS 315
>gi|217958851|ref|YP_002337399.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH187]
gi|217065525|gb|ACJ79775.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH187]
Length = 428
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 79/359 (22%), Positives = 139/359 (38%), Gaps = 35/359 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ LV I + L + P + T +D TG V+
Sbjct: 5 KKILVFITVICLFFLTPMTLRAETNVGVNPEQVAPPPKEGPNVFSQFATTIDAKTGDVLY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS+TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 65 DKNAHHRAFPASMTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKT 218
HYTT DMA+++ +P+ + K + + + + + + G KT
Sbjct: 180 NHYTTPYDMAMITR-GVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSIYFENPFSIGGKT 238
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
GFT + +V + +I V++ A R + + F + ++
Sbjct: 239 GFTNEARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMADYSFGQFVKQTVLDKHSW 297
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
K Y + S EV + E N T + A + + K +
Sbjct: 298 HQKTTYLNKDIDSELEKSAEVMLKKDEGKNVRTIFRAASLDKDSL--YHKGIHRGEVVG 354
>gi|145512197|ref|XP_001442015.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409287|emb|CAK74618.1| unnamed protein product [Paramecium tetraurelia]
Length = 302
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/265 (24%), Positives = 112/265 (42%), Gaps = 19/265 (7%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA-MLTTP 79
S+A + ++D+N+G V+ + AS+TK+MT YVV S K T
Sbjct: 36 SLAPRLTAKSWIVVDSNSGDVLYAYNENQRREIASITKIMTFYVVLSMCKTMNVQTNNTY 95
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK------- 132
+S AS + + KG +++D+ L++ S ND A+ AE+
Sbjct: 96 AEVSLQASLVGGTTANLLKGDILSIDDLFYGLMLPSGNDAAMTFAENFGIYAMYQNKIKG 155
Query: 133 -----KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-- 185
F+Q MNN ++ L ++ T + N HG+ + ++A D+A L ++ D
Sbjct: 156 NNPIIYFIQEMNNKARELRMTQTTYANPHGLNNKNNLSSAYDVAKLCNQLLKDDFFKKVV 215
Query: 186 ----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
H+ I+ E + N + G G+KTG T +G + + ++S
Sbjct: 216 NTKIHFCTIQDEEGFTRDVMWENTNKLLYQGFRGIKTGNTSVAGPCLASYYQSNNRSFTI 275
Query: 242 VILGALDRNTRNKVSASLLSMGFYN 266
VILG ++ R + L+
Sbjct: 276 VILGCRNQEDRWSETMQLVQWCLSQ 300
>gi|218897511|ref|YP_002445922.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
G9842]
gi|218543059|gb|ACK95453.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
G9842]
Length = 338
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF----MNAHGVVQHGHYTTARDMAI 172
N A+A+AE + E F MN +K L L + TTA D+A
Sbjct: 124 NRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGVNNDTNKQSTTTAIDVAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ R+ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAARLIKDFPDVLNITKLTSYQFSFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A D LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLEDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|228899954|ref|ZP_04064194.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
4222]
gi|228859685|gb|EEN04105.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
4222]
Length = 407
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 74/306 (24%), Positives = 124/306 (40%), Gaps = 13/306 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG V+ + H PAS TK++TA ++ K
Sbjct: 16 VAPPPAEGPNVFSQFATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 131 FANMMNEKAKQLGARDSHFVTPNGLHDPNHYTTPYDMAMITKGVQNYPEILQAMNTKRTT 190
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + G KTGFT + +V + +I V++ A R
Sbjct: 191 VTTSRQTVSIFNKSNFFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRPE 249
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F + ++ K Y N S E+ + E N T
Sbjct: 250 IYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDINSELEKSAELMLKKDEGKNVKT 309
Query: 309 QMKEAK 314
+ A
Sbjct: 310 IFRAAS 315
>gi|229074634|ref|ZP_04207657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
gi|228708516|gb|EEL60666.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
Length = 407
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 72/327 (22%), Positives = 132/327 (40%), Gaps = 17/327 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPKEGPNVFSQFAATIDAKTGDLLYDKNAHHRAYPASVTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETVNRNTALMILMVLSANDVSYAIAEHIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT D+A+++ +P+ + K
Sbjct: 131 FANMMNEKAKQLGATDSHFVTPNGLHDPNHYTTPYDIAMITRD-VQKYPEILQAMNTKRT 189
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + + + G KTGFT + +V + +I V++ A R
Sbjct: 190 TVTTSRQTVSIFNKSIYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 248
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F T + ++ K Y + S E+ + E N
Sbjct: 249 EIYEDLKQMAEYSFGQFTKQMVLDKHSWHQKTTYLNKDIDSELEKSAELVLKKDEGKNVK 308
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKIT 334
T + A + + K +
Sbjct: 309 TIFRAASLDKDSL--YHKGIHRGEVVG 333
>gi|229190640|ref|ZP_04317636.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
gi|228592773|gb|EEK50596.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
Length = 338
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/281 (24%), Positives = 122/281 (43%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E F MN +K L L N+ G+ + + TTA D A
Sbjct: 124 NRSALALAEHIAGNEDNFTILMNKKAKELKLLQPSPFLNSTGINNNTNKQSTTTAIDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ R+ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A GD LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|206971597|ref|ZP_03232547.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH1134]
gi|229070033|ref|ZP_04203307.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
gi|229079727|ref|ZP_04212260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
gi|206733582|gb|EDZ50754.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH1134]
gi|228703567|gb|EEL56020.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
gi|228713088|gb|EEL64989.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
Length = 338
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF----MNAHGVVQHGHYTTARDMAI 172
N A+A+AE + E F MN +K L L + TTA D A
Sbjct: 124 NRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNDTDKQSTTTAIDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ ++ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAAKLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A GD LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|329935730|ref|ZP_08285535.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
griseoaurantiacus M045]
gi|329304821|gb|EGG48694.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
griseoaurantiacus M045]
Length = 281
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 21/277 (7%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++A L+ + ++++ TG + D + S TK+MTA VV
Sbjct: 7 VLATGALTAAPAQAVTKPSITAKGGFVMNSGTGKSLYTKKADTRLSTGSTTKIMTAKVVL 66
Query: 67 SFLKEKKAMLTTPITI----SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
S L + +TI S S++ G +T+ L L++ S D A A
Sbjct: 67 SQS---NLNLNSKVTIQKAYSDYIVRNNASSAHLIVGDKVTVRQLLYGLMLPSGCDAAYA 123
Query: 123 IAESL------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
+A+ K F+ MN T+++LGL+ THF + G+ +Y+T RD+ L+
Sbjct: 124 LADKFGSGSSRSARVKSFLSKMNKTARDLGLTNTHFDSFDGIGNGSNYSTPRDLTKLARN 183
Query: 177 IKTDFPQYM--------HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ K + + NTN + + G G+KTG + + +
Sbjct: 184 ALKNSTFRTVVKTKSTKQKVTTKSGGYRYMNWSNTNPLLSGYSGTIGVKTGSGPEAKYCL 243
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
V +A + ++++ +L + R + LL+ GF
Sbjct: 244 VFAATRNGKTVVGTVLASSSVANRTSDAKKLLTYGFA 280
>gi|160941724|ref|ZP_02089051.1| hypothetical protein CLOBOL_06620 [Clostridium bolteae ATCC
BAA-613]
gi|158435221|gb|EDP12988.1| hypothetical protein CLOBOL_06620 [Clostridium bolteae ATCC
BAA-613]
Length = 381
Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/248 (27%), Positives = 105/248 (42%), Gaps = 25/248 (10%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYP 90
+D TG V+ D + PAS+TKLMTA +V L +T S E
Sbjct: 1 MDAATGTVLFSKNGDKQFYPASITKLMTALLVAENC-----SLDDKVTFSATATTNLEAG 55
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ L L++KSAN++ A+AE + + KF + MN + LG + T
Sbjct: 56 AVSINMTAGDVMTVRQCLYALLLKSANEVGNALAEHVAGSNAKFAEMMNAKAAALGCTNT 115
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------------- 197
HF N HG+ HYTT DMA+++ + +
Sbjct: 116 HFTNPHGLNDSNHYTTPHDMALIAR-AAFQNDVVKTVASTRTYTLPATIKNSSGLTVTIG 174
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
K N N + G G KTG+T +G +V + + LIAVI+ ++T +
Sbjct: 175 HKMLNPN-DARYYPGVIGGKTGYTSKAGNTLVTAVEKDGVRLIAVIM--KSKSTHYTDTK 231
Query: 258 SLLSMGFY 265
+L G+
Sbjct: 232 ALFDYGYE 239
>gi|312171829|emb|CBX80086.1| penicillin-binding protein 7 [Erwinia amylovora ATCC BAA-2158]
Length = 316
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/281 (20%), Positives = 105/281 (37%), Gaps = 24/281 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
+R FL+ +AM + A ++D N+ VI +++PD
Sbjct: 5 IRLFLLSLAMLFSIPFLMNQAAARAHQPEVSGAVQPDIASGSAMIVDLNSNKVIYQSHPD 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNA 107
AS+TKLMT V L + + + + S + S ++ N
Sbjct: 65 RVRPIASITKLMTVMVTLDA----HLPLDEMLKVDISHTPQMRGIYSRVRLNSELSRRNM 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+ L ++ S N A ++A F++ MN ++ LG+S T ++ G+ + +TA
Sbjct: 121 MLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALGMSHTRYVEPTGL-AIENVSTA 179
Query: 168 RDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFT 221
RD++ L + + + NTN V KTGFT
Sbjct: 180 RDLSKLLLATRRYPLIGQLSTTREDMASFRRPNYILPFRNTNHLVYRPDWNIQLTKTGFT 239
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + + + V+L A + T ++ L
Sbjct: 240 NEAGHCLVMRTVINQRPVSLVVLDAFGKYTHFADASRLRQW 280
>gi|296501957|ref|YP_003663657.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
gi|296323009|gb|ADH05937.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
Length = 428
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 78/338 (23%), Positives = 132/338 (39%), Gaps = 31/338 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ LV I + + P + + T +D TG V+
Sbjct: 5 KKILVFITVICSFFLTPITLRAETNIGVNPEQVAPPPAEGPNVFSQFATTIDAKTGDVLY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 65 DKNAYHRAYPASTTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
HYTT DMA+++ + + Q M+ + + + G KTG
Sbjct: 180 NHYTTPYDMAMITKGVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGGKTG 239
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---I 276
FT + +V + +I+V++ A R + + F T + ++
Sbjct: 240 FTNEARNTLVLLNEKDGNRIISVVM-ASQRPEIYEDLKQMAEYSFGQFTKQMVLDKHNWH 298
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
K Y N S E+ + E N T + A
Sbjct: 299 QKTTYLNKDVNSELEQSAELMLKKDEGKNVKTIFRAAS 336
>gi|296390777|ref|ZP_06880252.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa PAb1]
Length = 310
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/279 (22%), Positives = 104/279 (37%), Gaps = 21/279 (7%)
Query: 1 MR-QFLVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDH 49
MR + L ++ + + ++ +S + K + D NTG V+ PD
Sbjct: 1 MRNRLLSLVTLFLSLSVATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNPDL 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV L + I SE S + GS ++ + L
Sbjct: 61 VVPIASITKLMTAMVVLDSK----LPLDEVLPIAISETSEMRGVFSRVRVGSQISRRDML 116
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A++ + FV+ MN + LG+ T ++ G+ H T
Sbjct: 117 LLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHNVSTARD 176
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCA 223
+L + K + + Y NTN + KTGFT
Sbjct: 177 LTRLLVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTGFTNE 236
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + V+L A + T + L
Sbjct: 237 AGHCLVMRTTINRNPVNLVVLDAFGKYTHFADATRLRRW 275
>gi|30020624|ref|NP_832255.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|229044252|ref|ZP_04191925.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
gi|229109961|ref|ZP_04239541.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
gi|229127903|ref|ZP_04256888.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
gi|29896176|gb|AAP09456.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|228655547|gb|EEL11400.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
gi|228673482|gb|EEL28746.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
gi|228725077|gb|EEL76361.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
Length = 338
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 70/281 (24%), Positives = 122/281 (43%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L +KK L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDKKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E F MN +K L L N+ G+ + + TTA D A
Sbjct: 124 NRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNNTNKQSTTTAIDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ R+ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A GD LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|290891993|ref|ZP_06554990.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|290558587|gb|EFD92104.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
Length = 272
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASL+KLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVENGKPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDETLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MN + L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGADFPKEMNRQATKL 146
Query: 146 GLSA-THFMNAHGVVQHGHY--TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201
G+S+ T+F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSRTNFVSASGLDVDGKTAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN +G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTPEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|110800730|ref|YP_696485.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens ATCC 13124]
gi|168206144|ref|ZP_02632149.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens E str. JGS1987]
gi|168210835|ref|ZP_02636460.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens B str. ATCC 3626]
gi|168215430|ref|ZP_02641055.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens NCTC 8239]
gi|169343584|ref|ZP_02864583.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens C str. JGS1495]
gi|110675377|gb|ABG84364.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens ATCC 13124]
gi|169298144|gb|EDS80234.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens C str. JGS1495]
gi|170662405|gb|EDT15088.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens E str. JGS1987]
gi|170711129|gb|EDT23311.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens B str. ATCC 3626]
gi|182382120|gb|EDT79599.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens NCTC 8239]
Length = 291
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 13/246 (5%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ D ++ E AS TK++TA V ++ L +TISK A
Sbjct: 55 DAHFAIAYDAKNKKILYEKNAFRNVPMASTTKILTALVAINYSD-----LDEEVTISKTA 109
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ S F+ G +T+ L L+ KS ND A+AIAE + + + F MN+ ++ LG
Sbjct: 110 ASIRGSKVGFRAGEKVTMRELLFGLMYKSGNDAAIAIAEHIGGSIENFSILMNDFARMLG 169
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPN 202
L ++F + HG+ H+++A D+A+L + P + K + + Y N
Sbjct: 170 LKDSNFQSPHGLDSQMHFSSAYDLAVLMS-KAMEEPFFREISGTKEVGAEKYNFTRSYSN 228
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + A+G KTG+T +G +V+S +++I V+L R + + +
Sbjct: 229 INKMLWRLPNANGGKTGYTGQAGKCLVSSVDHNGRNIIIVVLNCPT---RWEATERVYEY 285
Query: 263 GFYNKT 268
N +
Sbjct: 286 VKANYS 291
>gi|292487716|ref|YP_003530589.1| penicillin-binding protein 7 [Erwinia amylovora CFBP1430]
gi|292898950|ref|YP_003538319.1| penicillin-binding protein 7 [Erwinia amylovora ATCC 49946]
gi|291198798|emb|CBJ45907.1| penicillin-binding protein 7 [Erwinia amylovora ATCC 49946]
gi|291553136|emb|CBA20181.1| penicillin-binding protein 7 [Erwinia amylovora CFBP1430]
Length = 316
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/281 (20%), Positives = 105/281 (37%), Gaps = 24/281 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
+R FL+ +AM + A ++D N+ VI +++PD
Sbjct: 5 IRLFLLSLAMLFSIPFLMNQAAARAHQPEVSGAVQPDIASGSAMIVDLNSNKVIYQSHPD 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNA 107
AS+TKLMT V L + + + + S + S ++ N
Sbjct: 65 RVRPIASITKLMTVMVTLDA----HLPLDEMLKVDISHTPQMRGIYSRVRLNSELSRRNM 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+ L ++ S N A ++A F++ MN ++ LG+S T ++ G+ + +TA
Sbjct: 121 MLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKARALGMSHTRYVEPTGL-AIENVSTA 179
Query: 168 RDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFT 221
RD++ L + + + NTN V KTGFT
Sbjct: 180 RDLSKLLLATRRYPLIGQLSTTREDMASFRRPNYILPFRNTNHLVYRPDWNIQLTKTGFT 239
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + + + V+L A + T ++ L
Sbjct: 240 NEAGHCLVMRTVINQRPVSLVVLDAFGKYTHFADASRLRQW 280
>gi|229024081|ref|ZP_04180554.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
gi|228737223|gb|EEL87745.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
Length = 338
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 64/274 (23%), Positives = 109/274 (39%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + ++ F T + L+DTN+G ++ + P A+L+KLMT Y
Sbjct: 11 LLSFLITVLIVLYFYLYVNGPTIRAKSAILIDTNSGEIVYKKNERTPIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V L + K L + I + S T+ + L L++ N A+A+
Sbjct: 71 IVMEQLHDGKIQLDESVKIRNEVFQTETSPIQVTSKDNTTVRDLLHALLLTGNNRSALAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHF----MNAHGVVQHGHYTTARDMAILSWRIKT 179
AE + E F MN +K L LS + TTA D A ++ ++
Sbjct: 131 AEHIAGNEDNFTSLMNEKAKQLKLSQQSPFLNSTGINSEKNRQSITTAIDAAEIAAQLIK 190
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNIVAS 231
D+P ++ + K N + DG+++ + ++ V++
Sbjct: 191 DYPDVLNITKQTSYRFTFKDVQVFNTNKMIYSLNKNIKLKDVDGLQSSLSTNGNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A QGD I+V+L A + NT + LL GF
Sbjct: 251 ANQGDTRFISVVLDANEENTAFVETKKLLQYGFE 284
>gi|206977836|ref|ZP_03238725.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
H3081.97]
gi|206743933|gb|EDZ55351.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
H3081.97]
Length = 428
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 79/359 (22%), Positives = 139/359 (38%), Gaps = 35/359 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ LV I + L + P + T +D TG V+
Sbjct: 5 KKILVFITVICLFFLTPMTLRAETNVGVNPEQVAPPPKEGPNVFSQFATTIDAKTGDVLY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS+TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 65 DKNAHHRAFPASMTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKT 218
HYTT DMA+++ +P+ + K + + + + + + G KT
Sbjct: 180 NHYTTPYDMAMITR-GVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSIYFENPFSIGGKT 238
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
GFT + +V + +I V++ A R + + F + ++
Sbjct: 239 GFTNEARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMADYSFGQFVKQTVLDKHSW 297
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
K Y + S EV + E N T + A + + K +
Sbjct: 298 HQKTTYLNKDIDSELEKSAEVMLKKDEGKNVRTIFRAASLDKDSL--YHKGIHRGEVVG 354
>gi|300119331|ref|ZP_07057009.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
SJ1]
gi|298723286|gb|EFI64050.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
SJ1]
Length = 338
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++ +++ +++ + F + L+D N+G V+ + + +L
Sbjct: 4 LKKITILLLSFVITTLIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEETSIQSDTL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L + L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNKGNIQLDEVVQISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N +A+AE + E F Q MN +K L L NA G+ + TTA ++
Sbjct: 124 NRSTLALAEHIAGNEDNFTQLMNEKAKQLKLPQPSPFLNATGMNNGTNKLSTTTAIEVGK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ R+ TDFP ++ ++ + K N + G DG++T F+ S
Sbjct: 184 LATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNS 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A +GD LI+VIL A + N+ + LL GF
Sbjct: 244 NYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFD 284
>gi|289422780|ref|ZP_06424618.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
anaerobius 653-L]
gi|289156810|gb|EFD05437.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
anaerobius 653-L]
Length = 313
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 73/307 (23%), Positives = 109/307 (35%), Gaps = 35/307 (11%)
Query: 1 MRQFLVIIAMAMLSN----IFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHP 50
+++ I A +LS F +AE + K Y L+D +G +I + D
Sbjct: 3 IKKINSIFAALVLSTGILTYFTSGVLAEGKEDFNSLKSKYMVLMDYESGKIIYKKNADQK 62
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PAS TK+ TAY V + L I I S + T L
Sbjct: 63 IYPASTTKIWTAYCVLQKCQ----DLNEKIKIGTMPEIEGSSMYLEEGEVFTTRQLLESL 118
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
LI S + V E+KF+ MN+ +K G + THF N HG+ HYTTA +M
Sbjct: 119 LIHSSNDVAYVLARHYGGGDERKFIDFMNSEAKKFGFNHTHFNNPHGLPDTDHYTTAEEM 178
Query: 171 AILSWRIKTDFP--------------------QYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
++ + Y K L + N +
Sbjct: 179 TNMARIAYGNDIIKSIVAKKSVTFKKSNEIKLDRELYNSNKFLNSNMQMNYNGKDIPMKY 238
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270
DG+KTG+T +G +VA+ + +I+ + A + S LL GF N
Sbjct: 239 DVVDGIKTGYTDDAGNCLVATGTKNKIRMISGVFFAPSG-SLYHDSRFLLDYGFENFKSI 297
Query: 271 KKINYII 277
Sbjct: 298 IIYKKSD 304
>gi|229178878|ref|ZP_04306238.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
gi|228604643|gb|EEK62104.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
Length = 338
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 66/281 (23%), Positives = 117/281 (41%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF----MNAHGVVQHGHYTTARDMAI 172
N A+A+AE + E F MN +K L L + TTA D A
Sbjct: 124 NRSALALAEHIAGNEDNFTVLMNKKAKELKLLQPSPFLNSTGINNDTDKQSTTTAIDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ ++ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAAKLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A GD LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|18310783|ref|NP_562717.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
13]
gi|168214376|ref|ZP_02640001.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens CPE str. F4969]
gi|18145464|dbj|BAB81507.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
13]
gi|170714164|gb|EDT26346.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens CPE str. F4969]
Length = 291
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 13/246 (5%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ D ++ E AS TK++TA V ++ L +TISK A
Sbjct: 55 DAHFAIAYDAKNKKILYEKNAFRNVPMASTTKILTALVAINYSD-----LDEEVTISKTA 109
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ S F+ G +T+ L L+ KS ND A+AIAE + + + F MN+ ++ LG
Sbjct: 110 ASIRGSKVGFRAGEKVTMRELLFGLMYKSGNDAAIAIAEHIGGSIENFSILMNDFARMLG 169
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPN 202
L ++F + HG+ H+++A D+A+L + P + K + + Y N
Sbjct: 170 LKDSNFQSPHGLDSQMHFSSAYDLAVLMS-KAMEEPFFREISGTKEVGAEKYNFTRSYSN 228
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + A+G KTG+T +G +V+S +++I V+L R + + +
Sbjct: 229 INKMLWRLPNANGGKTGYTGQAGKCLVSSVDHNGRNIIIVVLNCPT---RWEATERVYEY 285
Query: 263 GFYNKT 268
N +
Sbjct: 286 VKANYS 291
>gi|256380453|ref|YP_003104113.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinosynnema mirum DSM
43827]
gi|255924756|gb|ACU40267.1| Serine-type D-Ala-D-Ala carboxypeptidase [Actinosynnema mirum DSM
43827]
Length = 669
Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/249 (25%), Positives = 104/249 (41%), Gaps = 11/249 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ + D ++G V+A P PAS+ K++ A V L + +T
Sbjct: 77 APSGITAKTWLVADMDSGAVLAAYDPHGRQRPASVIKVLLAMVAAKE-----LPLDSQMT 131
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ +E + K G+T T++ L+ L++ S ND+A A+A L + MN
Sbjct: 132 AIEEDTEQECTCIGLKAGNTYTVEQLLQSLVMASGNDVANALARRLGGLPSAI-RKMNAL 190
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG----LEIKG 197
+ LG T + G+ G T+A D+A++ + E
Sbjct: 191 ATELGARDTRAITPSGLDAPGTSTSAYDVALIFRAAMKYPDFARAIATQRIEFPAEEGGT 250
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-S 256
K N N + ++ GA G KTGFT + V +A + + L+AV+L A + R +
Sbjct: 251 KPVINDNRLMTSYAGALGGKTGFTDDAQHTYVGAAERDGRRLVAVLLRAQQQPLRTTDQA 310
Query: 257 ASLLSMGFY 265
A LL GF
Sbjct: 311 ARLLDYGFS 319
>gi|255602672|ref|XP_002537900.1| d-alanyl-d-alanine carboxypeptidase, putative [Ricinus communis]
gi|223514649|gb|EEF24482.1| d-alanyl-d-alanine carboxypeptidase, putative [Ricinus communis]
Length = 269
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 66/267 (24%), Positives = 110/267 (41%), Gaps = 12/267 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ VI A+ + + + P + D G V+ E D ASLTKLM
Sbjct: 1 MKK--VICALLLAATSLCARADTPPLYSPSVIVYDVTRGEVLLEKNADDLRPIASLTKLM 58
Query: 61 TAYVVFSFLKEKKAMLT-TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
TA VV +E LT I + S S G+++ + L+L ++ S N
Sbjct: 59 TAMVVLDKAQEMGDTLTIDEADIDRLKH----SGSRIPVGTSLKREAMLRLALMSSENRA 114
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A A++ S + F++ MN ++ L +S THF + G+ + +TARD+ L+
Sbjct: 115 ASALSRSFPGGQPAFIEQMNLKARGLSMSGTHFEDPTGL-SPDNVSTARDVVKLAIEASH 173
Query: 180 DFPQYMHYFQIKGLEI---KGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQG 235
+ + + + Y NT+ V KTG+T +G IV
Sbjct: 174 YPMISLFTTLTAYEQTIGNRTRFYHNTDPVVRWTDWDVQLAKTGYTREAGRCIVVDVAMP 233
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSM 262
+I +LGA R+ A++ +
Sbjct: 234 RGPVIIALLGARSARARSADLATIRNW 260
>gi|228938491|ref|ZP_04101100.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228971370|ref|ZP_04131997.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228977982|ref|ZP_04138362.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
gi|228781770|gb|EEM29968.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
gi|228788406|gb|EEM36358.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228821228|gb|EEM67244.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 407
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 70/308 (22%), Positives = 130/308 (42%), Gaps = 17/308 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG V+ + H PAS TK++TA ++ K
Sbjct: 16 VAPPPAEGPNVFSQFATTIDAKTGDVMYDKNAYHRAYPASTTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 131 FANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYDMAMITKGVQKYPEILQAMNTKRTT 190
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + G KTGFT + +V + +I+V++ A R
Sbjct: 191 VTTSRQTVSIFNKSNFFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVM-ASQRPE 249
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+ + F T + ++ N + ++++V + ++ +
Sbjct: 250 IYEDLKQMADYSFGQFTKQTVLDK-------HNWHQKTTYLNKDVSSELEKSAELMLKKD 302
Query: 312 EAKDKESH 319
E K+ ++
Sbjct: 303 EGKNVKTI 310
>gi|255026482|ref|ZP_05298468.1| hypothetical protein LmonocytFSL_09353 [Listeria monocytogenes FSL
J2-003]
Length = 272
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASLTKLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVENGEALYEQNADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLNLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGADFPKEMNNQAKKL 146
Query: 146 GLSA-THFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201
G+S+ T F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN +G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|322381652|ref|ZP_08055618.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321154392|gb|EFX46702.1| D-alanyl-D-alanine carboxypeptidase-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 322
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 58/263 (22%), Positives = 110/263 (41%), Gaps = 27/263 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
++D ++G + + PAS TK+++A V IT+
Sbjct: 61 EIAGEAAFVMDLDSGETLFYKNENKKMYPASTTKILSALVALEK-----GNPNDVITVGD 115
Query: 85 NASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK--------- 133
+ S++ +G + L + + +++ S ND A ++ + +K
Sbjct: 116 EVNLKTAGESSAGLVQGQKLKLRDLIAGMMLPSGNDAARTVSRYVANRDKGKNISADEAN 175
Query: 134 --FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
F MN +K +G + +HF+N+HG+ HY+T DMA+++ + +
Sbjct: 176 VYFAGLMNKKAKEIGATKSHFVNSHGLHDPEHYSTVHDMALIAKEAMKNELFRNIVSKES 235
Query: 192 GLEI---KGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ Y N N + G +G+KTGFT +G+ +V+SA + ++LI+V+
Sbjct: 236 YTTAAAKPAQTYVNRNKLLLQDNPVYYSGVNGIKTGFTDEAGYCLVSSARKNGKNLISVV 295
Query: 244 LGALDRNTRNKVSASLLSMGFYN 266
+ R+ S LL GF
Sbjct: 296 FHS-GRDNVWTDSQKLLDYGFDK 317
>gi|167461903|ref|ZP_02326992.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 317
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 58/263 (22%), Positives = 110/263 (41%), Gaps = 27/263 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
++D ++G + + PAS TK+++A V IT+
Sbjct: 56 EIAGEAAFVMDLDSGETLFYKNENKKMYPASTTKILSALVALEK-----GNPNDVITVGD 110
Query: 85 NASEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK--------- 133
+ S++ +G + L + + +++ S ND A ++ + +K
Sbjct: 111 EVNLKTAGESSAGLVQGQKLKLRDLIAGMMLPSGNDAARTVSRYVANRDKGKNISADEAN 170
Query: 134 --FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
F MN +K +G + +HF+N+HG+ HY+T DMA+++ + +
Sbjct: 171 VYFAGLMNKKAKEIGATKSHFVNSHGLHDPEHYSTVHDMALIAKEAMKNELFRNIVSKES 230
Query: 192 GLEI---KGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ Y N N + G +G+KTGFT +G+ +V+SA + ++LI+V+
Sbjct: 231 YTTAAAKPAQTYVNRNKLLLQDNPVYYSGVNGIKTGFTDEAGYCLVSSARKNGKNLISVV 290
Query: 244 LGALDRNTRNKVSASLLSMGFYN 266
+ R+ S LL GF
Sbjct: 291 FHS-GRDNVWTDSQKLLDYGFDK 312
>gi|291518495|emb|CBK73716.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens
16/4]
Length = 384
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 57/268 (21%), Positives = 99/268 (36%), Gaps = 26/268 (9%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ +++ TG + PAS TK+MTA + ++ + L TP+ +S
Sbjct: 116 SLDARAALVMNATTGKALYSQGATDILEPASTTKIMTALLTIEAIEAGQISLETPVIVSP 175
Query: 85 NASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
A P + + G +D L ++V S +AE + + FV MN
Sbjct: 176 TAIAGMPLDASHVSPRIQAGEVFNIDQLLTAMMVSSDCHSCNVLAEVVAGSVPDFVSMMN 235
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY------------ 187
+ LG + T+F N G YT A + +++ ++
Sbjct: 236 VKAAALGCTNTNFTNPSGYPDKNMYTNAYSLYLITANAIKHPLFNKYFNVSNAVLPATNL 295
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ N + G KTG +G +V A Q ++++I+V+LGA
Sbjct: 296 CATPRVLENTDAIINP-TSGYYNPYVIGGKTGTANRAGQCLVCVAKQNEKTVISVVLGAK 354
Query: 248 DRN--------TRNKVSASLLSMGFYNK 267
+R R + L+ MGF N
Sbjct: 355 NRKMFDGNTISMRYYETNRLIDMGFTNY 382
>gi|296168851|ref|ZP_06850523.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295896468|gb|EFG76118.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 413
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 58/280 (20%), Positives = 104/280 (37%), Gaps = 12/280 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + + D ++G VIA P PAS+ K++ A +
Sbjct: 85 IVAAPDAPPLPTDVSADAWLVADLDSGAVIAAKDPHGRHRPASIIKVLVAMASINA---- 140
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + + + ++G T++ L L++ S ND A A+A L ++
Sbjct: 141 -LNLNKAVPGTAEDAAAEGTKVGVEEGGVFTVNQLLHGLLMHSGNDAAHALAMQLGGMQQ 199
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-----YMHY 187
+ +N + LG T G+ G T+A D+ + + +
Sbjct: 200 AV-EKINVLAAKLGGKDTRAATPSGLDGPGMSTSAYDIGLFYRYAWQNPTFADIVATRTF 258
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GA 246
+ G + N N + + GA G KTG+T +G V +A + L+AV+L G
Sbjct: 259 DFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLMAVLLHGT 318
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ +A LL GF + N I D +
Sbjct: 319 RQPIAPWEQAAHLLDYGFATPQGTQVGNLIEPDPSLAPVK 358
>gi|52144058|ref|YP_082770.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
gi|196040650|ref|ZP_03107949.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
NVH0597-99]
gi|51977527|gb|AAU19077.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
gi|196028440|gb|EDX67048.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
NVH0597-99]
Length = 428
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 75/333 (22%), Positives = 133/333 (39%), Gaps = 33/333 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ L I + L + P + T +D TG ++
Sbjct: 5 KKILAFITVICLFFLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFATTIDAKTGDILY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS+TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 65 DKNAHHRAFPASMTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKT 218
HYTT DMA+++ +P+ + K + + + + T+ + G KT
Sbjct: 180 NHYTTPYDMAMITR-GVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPYSIGGKT 238
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
GFT + +V + +I V++ A R + + F + ++
Sbjct: 239 GFTNEARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMADYSFGQFVKQTVLDKHSW 297
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
K Y + S E+ + E N T
Sbjct: 298 HQKTTYLNKDIDSELEKSAELMLKKDEGKNVKT 330
>gi|46909001|ref|YP_015390.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
serotype 4b str. F2365]
gi|46882274|gb|AAT05567.1| putative D-alanyl-D-alanine carboxypeptidase [Listeria
monocytogenes serotype 4b str. F2365]
Length = 272
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASLTKLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGANFPKEMNNQAKKL 146
Query: 146 GLSA-THFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201
G+S+ T F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN ++G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGRRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|291531742|emb|CBK97327.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
Length = 466
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 76/386 (19%), Positives = 140/386 (36%), Gaps = 52/386 (13%)
Query: 1 MRQFL----VIIAMAMLSNIFPFLSIAET-------------NKLPYYTLLDTNTGHVIA 43
M++ L ++ AML + AE +++T+TG V+
Sbjct: 1 MKKILRFASALLCGAMLLCSLSVTAFAENDDEVYDFDPNTDKIYSEAVYMVNTDTGDVVY 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM------LTTPITISKNASEYPPSNSTFK 97
+ PAS TK+MT + L E ++ + PSN+ +
Sbjct: 61 KKNESKKMYPASTTKIMTCIIALEHLSEASLSKKVEVPYDCFNDFYEDPNYSDPSNAAIE 120
Query: 98 K-GSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNA 155
+T + L L++ SA + A +A ++ + KF+ MN +K LG + T+F+NA
Sbjct: 121 PLQDNLTYKDCLYALMLPSACEAANILAYNIGGGSITKFIGMMNEKAKELGCTGTNFVNA 180
Query: 156 HGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-------- 207
HG+ +YTTA D+ ++ FP + E+ +++
Sbjct: 181 HGLHNDNNYTTAEDLYKMTKYAYDKFPLFKKITSTYEYEMPKNDANPDGYSIYSTISLLR 240
Query: 208 ----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-------NTRNK-- 254
+ A G KTG T +G + SA + + I V LGA + +
Sbjct: 241 PGSVYEYEYAYGTKTGTTDEAGRCL-VSAAKNQYNYILVTLGAPVKDKNGEYYDDWYSMI 299
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQ-----NLSNEVPNISEEVCTTQKEIINYNTQ 309
+ +L F N +N + + + ++ + + + + +
Sbjct: 300 DALNLYKWAFTNFEMATVVNNDEQITEVKVEMGESATHVILTPESDYTALMPKSVKESGV 359
Query: 310 MKEAKDKESHFIDFEKITLLKNKITK 335
K K ES +K +L K
Sbjct: 360 QKVFKAYESVQAPVKKGDILGVMDVK 385
>gi|227891443|ref|ZP_04009248.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus
salivarius ATCC 11741]
gi|227866590|gb|EEJ74011.1| D-alanyl-D-alanine serine family carboxypeptidase [Lactobacillus
salivarius ATCC 11741]
Length = 384
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 65/363 (17%), Positives = 139/363 (38%), Gaps = 35/363 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ +++++ + + + A+ ++D TG V+ + D + ASLTK
Sbjct: 6 KNWIILVMLGIAIITGSGIMRGVRADKIDAKAAYMIDAGTGQVLYQQNADSKYPIASLTK 65
Query: 59 LMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
++T V+ + +K I +S A+ + SN +G + T+ + ++ +++
Sbjct: 66 ILTLAVIMKDIHNQKLSWDQKIKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIV 125
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------Q 160
SA+ A+A + + + F + M + G++ N G+
Sbjct: 126 SADGSTEALALADAGSVQAFNEKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDD 185
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--------- 211
+ +A+D+A++S + ++P+ + + K ++ K N ++
Sbjct: 186 QENKFSAKDIALVSKYLVNNYPEVIDITKQKNVDFKISADQTYNMENINYMLEGSYAAPK 245
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
DG+KTGFT +G+ V + Q +I VIL A D N + + ++ N
Sbjct: 246 NGTIDGLKTGFTDEAGYCFVGTGTFNGQRVITVILNASDYNKQFAETNKMIETVMNN--- 302
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
K +N +Q L E +++ K + K E K +
Sbjct: 303 DKVVNTKDIKSVKQALKKENLKVNDTNIWVTKNTDPKQIKAKLTLSNEKIKAKNAKNEKV 362
Query: 330 KNK 332
Sbjct: 363 GTI 365
>gi|237734723|ref|ZP_04565204.1| D-alanyl-D-alanine carboxypeptidase [Mollicutes bacterium D7]
gi|229382051|gb|EEO32142.1| D-alanyl-D-alanine carboxypeptidase [Coprobacillus sp. D7]
Length = 352
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 61/348 (17%), Positives = 131/348 (37%), Gaps = 20/348 (5%)
Query: 2 RQFLVIIA--MAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
++ L + + +++ + P ++ + Y +D +G V+ D PAS
Sbjct: 3 KKILSFLLVGICLIATLTPIRALENSEDIGLTCDYAVAIDAKSGLVLYNKNMDERMYPAS 62
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MT + + + K + E S++ F+ G T+T ++ L I+ S
Sbjct: 63 MTKVMTVILALELMDDMKKTTVITQSDIDTVWETGASSANFEVGETVTYEDLLYGAILPS 122
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
D A+A +LC +++ FV MN ++ L L THF+N G+ HYTT DMA++
Sbjct: 123 GADATRALANNLCGSQEAFVDKMNELAQKLNLKDTHFVNTTGIHDENHYTTVHDMALIVQ 182
Query: 176 RIKTD------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ + Q + K N A G K+G+T + +
Sbjct: 183 YAIQNEDFKNIYAQRYKTSSNGLHQWVNKSMYNAKRAKINVDDILGCKSGYTNEAKSCLS 242
Query: 230 ASAIQGDQSLIAVILGALDRNTRN----KVSASLLSMGFYNKTDRKKINYIIK----DFY 281
+ D +I ++ +++ + + + +++ + + + + K D
Sbjct: 243 SLNRVNDNEIITIVGHSVNNDVKTHAAVSDTLDIMNYVGQHYSLQSILTKGAKVRTLDVT 302
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
++ + + ++ + +K L
Sbjct: 303 LAKDEQKIAITNLNDVSAFLPNDFNKDDLEYKYSFKKLEAPVKKGEKL 350
>gi|182625716|ref|ZP_02953485.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens D str. JGS1721]
gi|177909118|gb|EDT71593.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens D str. JGS1721]
Length = 291
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 62/245 (25%), Positives = 108/245 (44%), Gaps = 11/245 (4%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ D ++ E AS TK++TA V ++ L +TISK A
Sbjct: 55 DAHFAIAYDAKNKKILYEKNAFRNVPMASTTKILTALVAINYSD-----LDEEVTISKTA 109
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ S F+ G +T+ L L+ KS ND A+AIAE + + + F MN+ ++ LG
Sbjct: 110 ASIRGSKVGFRAGEKVTMRELLFGLMYKSGNDAAIAIAEHIGGSIENFSILMNDFARMLG 169
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---KYPNT 203
L ++F + HG+ H+++A D+A+L + + + K Y N
Sbjct: 170 LKDSNFQSPHGLDSQMHFSSAYDLAVLMSKAMEEPFFREISGTNEVGAEKYNFTRSYSNI 229
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
N + A+G KTG+T +G +V+S +++I V+L R + + +
Sbjct: 230 NKMLWRLPNANGGKTGYTGQAGKCLVSSVDHNGRNIIIVVLNCPT---RWEATERVYEYV 286
Query: 264 FYNKT 268
N +
Sbjct: 287 KANYS 291
>gi|42780462|ref|NP_977709.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
ATCC 10987]
gi|42736381|gb|AAS40317.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
ATCC 10987]
Length = 428
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 78/359 (21%), Positives = 139/359 (38%), Gaps = 35/359 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ L I + L + P + T +D TG ++
Sbjct: 5 KKILAFITVICLFFLTPMTLRAETNVGVNPEQVAPPPKEGPNVFSQFATTIDAKTGDILY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS+TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 65 DKNAHHRAFPASMTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKT 218
HYTT DMA+++ +P+ + K + + + + T+ + G KT
Sbjct: 180 NHYTTPYDMAMITR-GVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGGKT 238
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
GFT + +V + +I V++ A R + + F + ++
Sbjct: 239 GFTNEARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMADYSFGQFVKQTVLDKHSW 297
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
K Y + S EV + E N T + A + + K +
Sbjct: 298 HQKTTYLNKDIDSELEKSAEVMLKKDEGKNVRTIFRAASLDKDSL--YHKGIHRGEVVG 354
>gi|110801499|ref|YP_699085.1| penicillin-binding protein 5* precursor [Clostridium perfringens
SM101]
gi|110682000|gb|ABG85370.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens SM101]
Length = 291
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 13/246 (5%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ D ++ E AS TK++TA V ++ L +TISK A
Sbjct: 55 DAHFAIAYDAKNKKILYEKNAFRNVPMASTTKILTALVAINYSD-----LDEEVTISKTA 109
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ S F+ G +T+ L L+ KS ND A+AIAE + + + F MN+ ++ LG
Sbjct: 110 ASIRGSKVGFRAGEKVTMRELLFGLMYKSGNDAAIAIAEHIGGSIENFSILMNDFARMLG 169
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPN 202
L ++F + HG+ H+++A D+A+L + P + K + + Y N
Sbjct: 170 LKDSNFQSPHGLDSQMHFSSAYDLAVLMS-KAMEEPFFREISGTKEVGAEKYNFTRSYSN 228
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + A+G KTG+T +G +V+S +++I V+L R + + +
Sbjct: 229 INKMLWRLPNANGGKTGYTGQAGKCLVSSVDHNGRNIIIVVLNCPT---RWEATERVYEY 285
Query: 263 GFYNKT 268
N +
Sbjct: 286 VKANYS 291
>gi|227530036|ref|ZP_03960085.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis
ATCC 49540]
gi|227350068|gb|EEJ40359.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis
ATCC 49540]
Length = 411
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/375 (18%), Positives = 136/375 (36%), Gaps = 43/375 (11%)
Query: 1 MRQFLVIIAMAMLSNI-----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ + ++ +L S A+ ++D +TG +I + + AS
Sbjct: 1 MKKVIAFLSTLLLMICCVVARPQTASAAQMIDSRSAIMIDADTGQIIYQQNSEEKLPIAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF----KKGSTMTLDNALKLL 111
++KL+T V+ + + T + ISK +E ++ + G + T+
Sbjct: 61 ISKLLTVSVIEDEINHHQLSWNTKVKISKKIAEVSNDSNYSAIGLQAGQSYTVRELFNAT 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------- 158
++KSA+ A+A+A + T K+F + M ++ +G++ +N G+
Sbjct: 121 LIKSADGAALALATADGSTIKQFNEKMQKKARQIGITDATIVNPVGLKNGDLKGLKQAGI 180
Query: 159 -VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLG 212
+ TARD+A++S + +P + + K K+ N N +
Sbjct: 181 SNNAENSMTARDVALMSQYLVKHYPSVLKVTSQPKAQFTIAKGKTKEVENLNKMLSGGKY 240
Query: 213 ------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSASLLSMGF 264
DG+KTG + A+G ++ LI V+L A D++ R + L
Sbjct: 241 TVDGVQIDGLKTGTSEAAGACFASTGSYQGHRLITVVLHANGKDKDARFTQTQKLYQYFI 300
Query: 265 YNKTDRKKI--NYIIKDFYQQNLSNEVPNISEEVCTTQ-KEIINYNTQMKEAKDKESHF- 320
N + + + Q ++ Y Q + K +H
Sbjct: 301 QNAHQQVLTLNKKQSQKRVSNGTKRMLTVGPHSFTVWQMQKTAQYTIQPRYYKHLTNHKA 360
Query: 321 ---IDFEKITLLKNK 332
+K L
Sbjct: 361 RLNAPVKKGERLGTI 375
>gi|168704549|ref|ZP_02736826.1| D-alanyl-D-alanine carboxypeptidase [Gemmata obscuriglobus UQM
2246]
Length = 304
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 65/261 (24%), Positives = 106/261 (40%), Gaps = 21/261 (8%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ + D TG V+ P AS TK+MTAY+V E +L +T
Sbjct: 42 PPVVSAKGWAVADGKTGKVLWGGNEKDPLPIASTTKIMTAYIVLKLAAEDAKVLDEVLTF 101
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH----- 137
S+ A + S+S K G + + L L++ S ND A A AE K +
Sbjct: 102 SEAADKVVGSSSDLKAGDKVAVRELLYGLLLPSGNDAAHAFAEHFGPRFKSVGKEQDPVA 161
Query: 138 -----MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
MN T+K L + T++++ HG+ + + RD+ L++ D + +
Sbjct: 162 SFVAQMNATAKALKMGETNYLDPHGLT--RNVASPRDLVTLAFHAMKDPAFAKYVQTRRH 219
Query: 193 L--------EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ + NTN + G +G+KTG T A+G +V+ LI V L
Sbjct: 220 KCTVTDKDGNAREVTWNNTNKLLDI-EGYEGIKTGTTTAAGACLVSCGTLNGDRLIVVAL 278
Query: 245 GALDRNTRNKVSASLLSMGFY 265
G+ + R S +L +
Sbjct: 279 GSTSSDNRYTDSRNLYRWAWA 299
>gi|260584324|ref|ZP_05852071.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
ATCC 700633]
gi|260157842|gb|EEW92911.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
ATCC 700633]
Length = 442
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 65/352 (18%), Positives = 134/352 (38%), Gaps = 41/352 (11%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
IA + Y ++ +G ++ E D AS++K+++ Y++ +K + T I
Sbjct: 19 IAALEDVASYIAIEQTSGKILMEKNQDDVRGIASMSKMVSQYLILEAIKNSEITWETKIP 78
Query: 82 ISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
IS+ ++ Y SN ++ + + SAN +A+AE L +E K+V+
Sbjct: 79 ISERASKLSANYSLSNVPLWPNEKYSIQELFEASSIYSANAATIAMAEYLAGSEAKWVER 138
Query: 138 MNNTSKNLGLSATHFMNAHGVVQH--------------GHYTTARDMAILSWRIKTDFPQ 183
M ++ G+ +NA G+ + +AR +AI++ R+ DFP+
Sbjct: 139 MKEKVESWGIHDATIVNATGLPNKYGTTEKNPDFGDEAENSMSARSVAIVARRLVLDFPE 198
Query: 184 YMHYFQI-----KGLEIKGKKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQ 234
+ + + K N N+ + + G +G+KTG + SG +I +A +
Sbjct: 199 ILKISSVATKEFRPGTAGVTKMDNFNYLIPGLLFGYDGVNGLKTGTSEISGASITTTATR 258
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT------DRKKINYIIKDFYQQNLSNE 288
+ S+I V +G+ R KV+ +L F K + I +
Sbjct: 259 NNFSVIVVTMGSKQPLNRFKVTTKMLDELFKKYEGLVVGIPGKSVQNIQPYPVNGGADEK 318
Query: 289 VP-NISEEVCTTQKE-------IINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + + + + + + + + + N
Sbjct: 319 ISVDYGDNFVAAVPKGTAMSQVKVRFEPFKELLDENNALQAPITAGKTIGNL 370
>gi|149179839|ref|ZP_01858344.1| hypothetical protein BSG1_02450 [Bacillus sp. SG-1]
gi|148852031|gb|EDL66176.1| hypothetical protein BSG1_02450 [Bacillus sp. SG-1]
Length = 385
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 67/279 (24%), Positives = 112/279 (40%), Gaps = 16/279 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFL----SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ ++ I + ++ ++D TG ++ +PAS+
Sbjct: 1 MKKVIIAILLIFITAQTATAEEEYQKPSMLFSESGVMIDMETGTILYSKNAKRRMSPASI 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+ TA L + +TISK A+E S+ +G MTL L +++ S
Sbjct: 61 TKVATAIYAVEK-----GDLNSLVTISKEAAETEGSSVYLLEGEKMTLKQLLIGMMINSG 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTS-KNLGLSATHFMNAHGVVQHGHYTTARDM----A 171
ND A AIAE L + ++F +++N + G THF N HG+ + HYTTA DM +
Sbjct: 116 NDAAAAIAEHLDGSVEQFSENINQFLEEKAGAKDTHFTNPHGLYEKDHYTTAEDMALITS 175
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT--FLGADGMKTGFTCASGFNIV 229
+ KG Y + G + G K G+ S +V
Sbjct: 176 YAMKNEAFQDLFALKEIGWKGEGWNTTLYNHHKMVKGEVVYPEVTGGKNGYVDESKHTLV 235
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+A + S+ V+L A + ++ LL G +
Sbjct: 236 TTASNENLSVAVVLLKAQSKTAAYNDTSVLLDYGLNQFS 274
>gi|62184714|ref|YP_219499.1| putative D-alanyl-d-alanine carboxypeptidase [Chlamydophila abortus
S26/3]
gi|62147781|emb|CAH63526.1| putative D-alanyl-d-alanine carboxypeptidase [Chlamydophila abortus
S26/3]
Length = 433
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 66/368 (17%), Positives = 129/368 (35%), Gaps = 44/368 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+R F + L+ +F + ++ T TG V+ D PAS+
Sbjct: 2 IRVFFTFALLPFLAGLFTHPVHGQIVFPETRGNAVAVVHTETGKVLYAKDLDKRIYPASM 61
Query: 57 TKLMTAYVVFSFL-----KEKKAMLTTPITISKNASEYPPSNSTFKK------------G 99
TK+ TA + + +I+ A + S
Sbjct: 62 TKIATALFILKKHPDVLNRFIIVKPDAIASITPQAKKQSGYRSPPHWLETDGVTIQLQNK 121
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
++ + L++ SAND A A+A + + +F++ +N + LG THF N HG+
Sbjct: 122 EEVSGWDLFHALLICSANDAANALAIACSGSVAEFMKQLNQFLRELGCDHTHFNNPHGLH 181
Query: 160 QHGHYTTARDMAILSWRIKTDF-------PQYMHYFQIKGLEIKGKKYPNT---NWAVGT 209
HYTTA D+ + + E + N +
Sbjct: 182 HPDHYTTAGDLIRIMREGLKEPLFRQVIRTTNYTMAPTNLSEERILHLTNKLILPGSTYY 241
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ A G KTG T +G N+V +A + +S+I + G + + +L F +
Sbjct: 242 YPPALGGKTGTTKDAGRNLVFAAKKHGRSIITIAAGYSAMSELYEDVIALCEGVFNEQPL 301
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH-------FID 322
R+ + + + + + ++ + + Y+ E ++ ++ +
Sbjct: 302 RRYLIPPTETYPLR------LGLLGKISIPLPDGVYYDFYASEGEEPKTVSFVPHATKLP 355
Query: 323 FEKITLLK 330
+K LL
Sbjct: 356 IQKGDLLG 363
>gi|229101975|ref|ZP_04232689.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
gi|228681558|gb|EEL35721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
Length = 428
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 75/354 (21%), Positives = 141/354 (39%), Gaps = 32/354 (9%)
Query: 4 FLVIIAMAMLS---------------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD 48
F+ +I++ +L+ + P + +D TG ++ +
Sbjct: 10 FITVISLFLLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFAATIDAKTGDLLYDKNAH 69
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDN 106
H PAS+TK++TA ++ K T S+ A + SN F+ G T+ +
Sbjct: 70 HRAFPASVTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGETVNRNT 124
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ +G+ HYTT
Sbjct: 125 ALMILMVLSANDVSYAIAEHIGGSVENFANMMNEKAKQLGATDSHFVTPNGLHDPNHYTT 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKTGFTCA 223
D+A+++ +P+ + K + + + + + + G KTGFT
Sbjct: 185 PYDIAMITR-GVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSIYFENPYSIGGKTGFTNE 243
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDF 280
+ +V + +I V++ A R + + F T + ++ K
Sbjct: 244 ARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMAEYSFGQFTKQTVLDKHSWHQKTT 302
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
Y + S E+ + E N T + A + + K +
Sbjct: 303 YLNKDIDSELEKSAELMLKKDEGKNVKTIFRAASLDKDSL--YHKGIHRGEVVG 354
>gi|313105750|ref|ZP_07792013.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 39016]
gi|310878515|gb|EFQ37109.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 39016]
Length = 310
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/279 (22%), Positives = 104/279 (37%), Gaps = 21/279 (7%)
Query: 1 MR-QFLVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDH 49
MR + L ++ + + ++ +S + K + D NTG V+ PD
Sbjct: 1 MRNRLLSLVTLFLSLSVATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNPDL 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV L + I SE S + GS ++ + L
Sbjct: 61 VVPIASITKLMTAMVVLDSK----LPLDEVLPIAISETSEMRGVFSRVRVGSQISRRDML 116
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A++ + FV+ MN + LG+ T ++ G+ H T
Sbjct: 117 LLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHNVSTARD 176
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCA 223
+L + K + + Y NTN + KTGFT
Sbjct: 177 LTRLLVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTGFTNE 236
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + V+L A + T + L
Sbjct: 237 AGHCLVMRTTINRSPVNLVVLDAFGKYTHFADATRLRRW 275
>gi|1518782|gb|AAC46341.1| penicillin-binding protein 5 [Pseudomonas aeruginosa]
Length = 311
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/279 (22%), Positives = 104/279 (37%), Gaps = 21/279 (7%)
Query: 1 MR-QFLVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDH 49
MR + L ++ + + ++ +S + K + D NTG V+ PD
Sbjct: 1 MRNRLLSLVTLFLSLSVATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNPDL 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV L + I SE S + GS ++ + L
Sbjct: 61 VVPIASITKLMTAMVVLDSK----LPLDEVLPIAISETSEMRGVFSRVRVGSQISRRDML 116
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A++ + FV+ MN + LG+ T ++ G+ H T
Sbjct: 117 LLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHNVSTARD 176
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCA 223
+L + K + + Y NTN + KTGFT
Sbjct: 177 LTRLLVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTGFTNE 236
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + V+L A + T + L
Sbjct: 237 AGHCLVMRTTINRSPVNLVVLDAFGKYTHFADATRLRRW 275
>gi|15596066|ref|NP_249560.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa PAO1]
gi|107100327|ref|ZP_01364245.1| hypothetical protein PaerPA_01001352 [Pseudomonas aeruginosa PACS2]
gi|116048793|ref|YP_792407.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218893162|ref|YP_002442031.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa LESB58]
gi|254239222|ref|ZP_04932545.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa C3719]
gi|254245156|ref|ZP_04938478.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 2192]
gi|12230964|sp|P72161|PBP5_PSEAE RecName: Full=D-alanyl-D-alanine endopeptidase;
Short=DD-endopeptidase; AltName: Full=Penicillin-binding
protein 5; Short=PBP-5; Flags: Precursor
gi|9946767|gb|AAG04258.1|AE004521_9 D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa PAO1]
gi|115584014|gb|ABJ10029.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126171153|gb|EAZ56664.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa C3719]
gi|126198534|gb|EAZ62597.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa 2192]
gi|218773390|emb|CAW29202.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa LESB58]
Length = 310
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 63/279 (22%), Positives = 104/279 (37%), Gaps = 21/279 (7%)
Query: 1 MR-QFLVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDH 49
MR + L ++ + + ++ +S + K + D NTG V+ PD
Sbjct: 1 MRNRLLSLVTLFLSLSVATAVSASPPPKAGLPLQQELASGSALVTDQNTGKVLYSRNPDL 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV L + I SE S + GS ++ + L
Sbjct: 61 VVPIASITKLMTAMVVLDSK----LPLDEVLPIAISETSEMRGVFSRVRVGSQISRRDML 116
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A++ + FV+ MN + LG+ T ++ G+ H T
Sbjct: 117 LLALMSSENRAAASLAQNYPGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHNVSTARD 176
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCA 223
+L + K + + Y NTN + KTGFT
Sbjct: 177 LTRLLVASRQYPLLSQWSTTPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTGFTNE 236
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + V+L A + T + L
Sbjct: 237 AGHCLVMRTTINRSPVNLVVLDAFGKYTHFADATRLRRW 275
>gi|226330783|ref|ZP_03806301.1| hypothetical protein PROPEN_04704 [Proteus penneri ATCC 35198]
gi|225201578|gb|EEG83932.1| hypothetical protein PROPEN_04704 [Proteus penneri ATCC 35198]
Length = 239
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 6/212 (2%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + + +A + Y L+D N+G ++A PD +PASLTK+M++YVV
Sbjct: 18 LLLIISSPSFAVNNPVAPQIEAKSYVLMDYNSGKILASEKPDERLDPASLTKIMSSYVVG 77
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIA 120
+KE + + + +NA K G + + + + ++++S ND +
Sbjct: 78 QAIKEGRMSPDDMVIVGRNAWATGNPVLKGSSLMFLKPGDQVKVIDLNRGMVIQSGNDAS 137
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+A+AE + +++ FV MN+ +KNLGL T+F HG+ G YTTA+DMA+L+ + D
Sbjct: 138 IALAEHIAGSQETFVDLMNSYAKNLGLKNTYFKTVHGLDSEGQYTTAQDMALLTAAMIRD 197
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
P + K + PN N +
Sbjct: 198 VPSEYEIHKEKEFTFNNIRQPNRNRLLWNKKY 229
>gi|332297402|ref|YP_004439324.1| Serine-type D-Ala-D-Ala carboxypeptidase [Treponema brennaborense
DSM 12168]
gi|332180505|gb|AEE16193.1| Serine-type D-Ala-D-Ala carboxypeptidase [Treponema brennaborense
DSM 12168]
Length = 457
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 70/295 (23%), Positives = 111/295 (37%), Gaps = 27/295 (9%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+DT G ++ E D PAS+TKL+ YVVF + + L+ + +
Sbjct: 72 DVYSGAAILVDTANGCILFEKNADDVIPPASMTKLVVMYVVFQEIAAGRISLSDVVPLPP 131
Query: 85 NASEYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ +G T+TL+ L L V S ND AVA+A+ + + FV MN
Sbjct: 132 ESWAVNAPPNSSLMFLGQGQTVTLEELLLGLAVASGNDAAVAVADYVSGSVGAFVDRMNA 191
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTT----------------ARDMAILSWRIKTDFPQY 184
+ LGL T F+ G + T A + + I +
Sbjct: 192 EMEKLGLEHTRFVEPSGYSELNLTTPREFAAFARTYVNRYPEALEKFHSARSIAYPQEKN 251
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ + +TN +G G DG+KTGF SG+N+ +A +G +AV++
Sbjct: 252 LAPWHAGTGSQPPIVQQSTNKLLGVLPGCDGLKTGFIYESGYNLSLTAERGGTRFLAVMM 311
Query: 245 GALDRNT------RNKVSASLLSMGFYNKTDRKK-INYIIKDFYQQNLSNEVPNI 292
+ R K S +++ F R + SN V I
Sbjct: 312 RGPGSGSAEGNEYRVKDSTTMMEWAFGRFATRPADALEAVTVPVLGAASNAVTLI 366
>gi|271962810|ref|YP_003337006.1| D-alanyl-D-alanine carboxypeptidase [Streptosporangium roseum DSM
43021]
gi|270505985|gb|ACZ84263.1| D-alanyl-D-alanine carboxypeptidase [Streptosporangium roseum DSM
43021]
Length = 369
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 55/281 (19%), Positives = 99/281 (35%), Gaps = 13/281 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ Y + D TG V+A P + PAS K +TA +
Sbjct: 40 LVSPAGVKAPPKTAAKSYVVADAETGEVLAAKDPHGRYLPASTLKALTALTLIPK----- 94
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ S A S T+D+ K L++ S ND A+A+AE+ K
Sbjct: 95 LDKDLKVKPSSRAVNEEGSAVGLVSKPIYTVDDLFKALMLVSGNDCAMALAEANGGLAKT 154
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN ++ L T G+ + G ++A D+A+++ + + Y K
Sbjct: 155 LRD-MNTEAQRLQAFDTVAKTPSGLDKPGQSSSAYDLALIARAGLAN-DDFQRYISTKVD 212
Query: 194 EI----KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ + N N + + G G+K G+T + + V +A + ++I ++
Sbjct: 213 KFPAPKGYYEIGNHNKLLWRYKGMIGVKNGWTSKALGSFVGAARRNGHTIIVSVMRHEGY 272
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
A LL GF + + ++ P
Sbjct: 273 F--WDEVADLLDWGFATRGKAVPVGRLVDPLPAPAPLPTGP 311
>gi|167760257|ref|ZP_02432384.1| hypothetical protein CLOSCI_02630 [Clostridium scindens ATCC 35704]
gi|167662140|gb|EDS06270.1| hypothetical protein CLOSCI_02630 [Clostridium scindens ATCC 35704]
Length = 475
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 58/269 (21%), Positives = 106/269 (39%), Gaps = 17/269 (6%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+++ TG ++ D PAS+TK++TA V + + T
Sbjct: 82 PQGPGTYGEAAIVMEVGTGAILYAKNIDSHQYPASITKVLTALVAMENGQLE--DPVTFS 139
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV----AIAESLCKTEKKFVQ 136
S + S+ K+G+ ++L+ AL ++ SAN+ A ++ + F++
Sbjct: 140 HDSVAFLKPGDSSVGLKEGNQISLEQALHATLLASANEAAYAVGESVGINAGHDYNWFME 199
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-----QYMHYFQIK 191
MN + LG ++F N +G+ HYT ARDMA++ + Q ++Y
Sbjct: 200 QMNIRCRELGGENSNFANTNGLHDENHYTCARDMALIGRELFKHPDFFRIVQTLNYAIPA 259
Query: 192 GLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++ + + + A G KTGFT + ++ A G L+ V+L
Sbjct: 260 SETVEEHIFQQKHKMLIPENSNYYPYAIGGKTGFTSDALSTLITMADNGGMQLVCVVLRT 319
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINY 275
+ +A L F N +Y
Sbjct: 320 HGVHI-YPDTAGLFEYAFNNFGKVPVADY 347
>gi|229195572|ref|ZP_04322338.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
gi|228587821|gb|EEK45873.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
Length = 407
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 75/328 (22%), Positives = 134/328 (40%), Gaps = 17/328 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + T +D TG V+ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPKEGPNVFSQFATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 131 FANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITR-GVQKYPEILQAMNTKRT 189
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 190 TVTTSRQTVSIFNKSTYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 248
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E N
Sbjct: 249 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVK 308
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKITK 335
T + A + + K + +
Sbjct: 309 TTFRAATLDKDSL--YHKGIHRGEVVGE 334
>gi|229016624|ref|ZP_04173563.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
gi|229022835|ref|ZP_04179357.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
gi|228738470|gb|EEL88944.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
gi|228744711|gb|EEL94774.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
Length = 407
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 78/327 (23%), Positives = 132/327 (40%), Gaps = 17/327 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG V+ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPAEGPNVFSQFATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 131 FANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYDMAMITRGVQKYPEILQAMNTKRTT 190
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ G KTGFT + +V + +I V++ A R
Sbjct: 191 VTTSTQTVSIFNKSTYFENPYSMGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRPE 249
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F T + ++ K Y + S E+ + E N T
Sbjct: 250 IYEDLKQMAEYSFGQFTKQTVLDKHSWHQKTTYLNKDVDSELEKSAELMLKKDEGKNVKT 309
Query: 309 QMKEAK-DKESHFIDFEKITLLKNKIT 334
+ DKES ++K +
Sbjct: 310 AFRVNSVDKESL---YQKGIHRGEVVG 333
>gi|118476851|ref|YP_894002.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
Hakam]
gi|118416076|gb|ABK84495.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
Hakam]
Length = 443
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 77/359 (21%), Positives = 139/359 (38%), Gaps = 35/359 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ L I + L + P + T +D TG ++
Sbjct: 20 KKILAFITVICLFFLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFATTIDAKTGDILY 79
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS+TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 80 DKNAHHRAFPASMTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 134
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ +G+
Sbjct: 135 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDP 194
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKT 218
HYTT DMA+++ +P+ + K + + + + T+ + G KT
Sbjct: 195 NHYTTPYDMAMITR-GVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGGKT 253
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
GFT + +V + +I V++ A R + + F + ++
Sbjct: 254 GFTNEARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMADYSFGQFVKQTVLDKHSW 312
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
K Y + S E+ + E N T + A + + K +
Sbjct: 313 HQKTTYLNKDIDSELEKSAELMLKKDEGKNVKTTFRAASLDKDSL--YHKGIHRGEVVG 369
>gi|302536388|ref|ZP_07288730.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. C]
gi|302445283|gb|EFL17099.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. C]
Length = 487
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 47/282 (16%), Positives = 99/282 (35%), Gaps = 26/282 (9%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ + + D TG V+A + PAS K++ A V
Sbjct: 143 APALPANLSGRSWIVADAETGEVLAAHNAHWRLPPASTLKMLFADTVLP-----GLPKDQ 197
Query: 79 PITISKNASEYPPSNST---FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
++ + S+ K+ T+ + + ++S ND ++ ++ K V
Sbjct: 198 VHHVTDQDMDGVGPGSSLVGVKEDHDYTVHDLWLGVFLRSGNDAVHVLS-AMNGGIDKTV 256
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-------- 187
+ M ++ L TH ++ G ++A D+ +++ +
Sbjct: 257 KDMQAHAEELQALDTHVVSPDGYDAPEQVSSAYDLTLIARSGLQKQDFREYCGTAEAKFP 316
Query: 188 -FQIKGLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
Q G + + NTN + + G G+K G T +G +A +GD+ L+
Sbjct: 317 GRQEAGRPREYFEIQNTNRLMTGAGGIAPYKGIAGVKNGNTTMAGSTFTGAAQRGDKKLL 376
Query: 241 AVILGALDR--NTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
++ + N + +A L GF K + ++
Sbjct: 377 VTVMNPDNGGLNGVYEETAQLFDWGFAAAGKVKPVGELVPPK 418
>gi|291441236|ref|ZP_06580626.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
gi|291344131|gb|EFE71087.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
Length = 385
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 51/260 (19%), Positives = 90/260 (34%), Gaps = 15/260 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ + D TG V+A + PAS K + A V L L
Sbjct: 45 AGAPEVPELSAKSWLVADAGTGTVLAAHDAHRRLPPASTLKTLFALTVLPALPAG---LR 101
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
++ P S+ + + L + S+ + AV + SL + +
Sbjct: 102 HEVSERDLRGIGPGSSLVGVAENRTYEVSDLWNGVFLSSGNDAVHVLASLGGGWRTTAER 161
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----KGL 193
M + LG T + G G ++A D+A+ + + + G
Sbjct: 162 MEAKAHALGARDTRVESPDGYDAPGQVSSAFDLAVFGRAGLRNPEFARYCARTEARFPGR 221
Query: 194 EIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ NTN V + G G+K G+T +G +VA+A Q ++L+ ++
Sbjct: 222 DGGSYGIRNTNRLLTGADGVEPYPGLIGIKNGYTSNAGHTLVAAARQDGRTLVVTVMHPR 281
Query: 248 DRNTR--NKVSASLLSMGFY 265
+ + SLL GF
Sbjct: 282 SGGAHAVYEEARSLLDWGFE 301
>gi|239932885|ref|ZP_04689838.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
Length = 406
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 51/260 (19%), Positives = 90/260 (34%), Gaps = 15/260 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ + D TG V+A + PAS K + A V L L
Sbjct: 66 AGAPEVPELSAKSWLVADAGTGTVLAAHDAHRRLPPASTLKTLFALTVLPALPAG---LR 122
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
++ P S+ + + L + S+ + AV + SL + +
Sbjct: 123 HEVSERDLRGIGPGSSLVGVAENRTYEVSDLWNGVFLSSGNDAVHVLASLGGGWRTTAER 182
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----KGL 193
M + LG T + G G ++A D+A+ + + + G
Sbjct: 183 MEAKAHALGARDTRVESPDGYDAPGQVSSAFDLAVFGRAGLRNPEFARYCARTEARFPGR 242
Query: 194 EIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ NTN V + G G+K G+T +G +VA+A Q ++L+ ++
Sbjct: 243 DGGSYGIRNTNRLLTGADGVEPYPGLIGIKNGYTSNAGHTLVAAARQDGRTLVVTVMHPR 302
Query: 248 DRNTR--NKVSASLLSMGFY 265
+ + SLL GF
Sbjct: 303 SGGAHAVYEEARSLLDWGFE 322
>gi|324325393|gb|ADY20653.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 428
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 78/360 (21%), Positives = 140/360 (38%), Gaps = 35/360 (9%)
Query: 1 MRQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVI 42
+++ L I + L + P + T +D TG V+
Sbjct: 4 LKKILAFITVICLFFLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFATTIDAKTGDVL 63
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGS 100
+ H PAS+TK++TA ++ K T S+ A + SN F+ G
Sbjct: 64 YDKNAHHRAFPASMTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGE 118
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
T+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ +G+
Sbjct: 119 TINRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHD 178
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMK 217
HYTT DMA+++ +P+ + K + + + + T+ + G K
Sbjct: 179 PNHYTTPYDMAMITR-GVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGGK 237
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-- 275
TGFT + +V + +I V++ A R + + F + ++
Sbjct: 238 TGFTNEARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMADYSFGQFVKQTVLDKHS 296
Query: 276 -IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
K Y + S E+ + E N T + A + + K +
Sbjct: 297 WHQKTTYLNKDIDSELEQSAELMLKKDEGKNVRTIFRAASLDKDSL--YHKGIHRGEVVG 354
>gi|300215120|gb|ADJ79536.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
salivarius CECT 5713]
Length = 384
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 66/363 (18%), Positives = 139/363 (38%), Gaps = 35/363 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ +L+++ + + + A+ ++D TG V+ + + + ASLTK
Sbjct: 6 KNWLILVMLGIAIITGSGIMRGVEADKIDAKAAYMIDAGTGQVLYQQNANSKYPIASLTK 65
Query: 59 LMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
++T V+ + +K I +S A+ + SN +G + T+ + ++ +++
Sbjct: 66 ILTLAVIMKDIHNQKLSWDQKIKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIV 125
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------Q 160
SA+ A+A + + K F + M + G++ N G+
Sbjct: 126 SADGSTEALALADAGSVKAFNEKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDD 185
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--------- 211
+ +A+D+A++S + ++P+ + + K ++ K N ++
Sbjct: 186 QENKFSAKDIALISKYLVNNYPEVIDITKQKNVDFKISADQTYNMENINYMLEGSYAAPK 245
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
DG+KTGFT +G+ V + Q +I VIL A D N + + ++ N
Sbjct: 246 NGTIDGLKTGFTDEAGYCFVGTGTFNGQRVITVILNASDYNKQFAETNKIIESVMNN--- 302
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
K +N +Q L E +++ K + K E K +
Sbjct: 303 DKVVNTKDIKSVKQALKKENLKVNDTNIWVTKNTDPKQIKAKLTLSNEKIKAKNTKNEKV 362
Query: 330 KNK 332
Sbjct: 363 GTI 365
>gi|228951756|ref|ZP_04113856.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228957645|ref|ZP_04119393.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229043115|ref|ZP_04190843.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
gi|229068926|ref|ZP_04202220.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
gi|229078559|ref|ZP_04211118.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
gi|229108831|ref|ZP_04238436.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
gi|229126691|ref|ZP_04255703.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
gi|228656631|gb|EEL12457.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
gi|228674600|gb|EEL29839.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
gi|228704784|gb|EEL57211.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
gi|228714210|gb|EEL66091.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
gi|228726254|gb|EEL77483.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
gi|228802030|gb|EEM48899.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228807926|gb|EEM54445.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 405
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 75/306 (24%), Positives = 126/306 (41%), Gaps = 13/306 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG V+ + H PAS TK++TA ++ K
Sbjct: 14 VAPPPAEGPNVFSQFATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTK----- 68
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 69 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 128
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 129 FANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYDMAMITKGVQKYPEILQAMNTKRTT 188
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + G KTGFT + +V + +I+V++ A R
Sbjct: 189 VTTSRQTVSIFNKSNFFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVM-ASQRPE 247
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F T + ++ K Y N S E+ + E N T
Sbjct: 248 IYEDLKQMAEYSFGQFTKQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKT 307
Query: 309 QMKEAK 314
+ A
Sbjct: 308 IFRAAS 313
>gi|206968269|ref|ZP_03229225.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH1134]
gi|206737189|gb|EDZ54336.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH1134]
Length = 428
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 78/338 (23%), Positives = 132/338 (39%), Gaps = 31/338 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ LV I + + P + + T +D TG V+
Sbjct: 5 KKILVFITVICSFFLTPITLRAETNIGVNPEQVAPPPAEGPNVFSQFATTIDAKTGDVLY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 65 DKNAYHRAFPASTTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNEKAKQLGAKDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
HYTT DMA+++ + + Q M+ + + + G KTG
Sbjct: 180 NHYTTPYDMAMITKGVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSNFFENPYSIGGKTG 239
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---I 276
FT + +V + +I+V++ A R + + F T + ++
Sbjct: 240 FTNEARNTLVLLNEKDGNRIISVVM-ASQRPEIYEDLKQMAEYSFGQFTKQMVLDKHNWH 298
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
K Y N S E+ + E N T + A
Sbjct: 299 QKTTYLNKDVNSELEQSAELMLKKDEGKNVKTIFRAAS 336
>gi|238855155|ref|ZP_04645477.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
269-3]
gi|260665532|ref|ZP_05866378.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii
SJ-7A-US]
gi|282932568|ref|ZP_06337990.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
208-1]
gi|313473146|ref|ZP_07813630.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii 1153]
gi|238832236|gb|EEQ24551.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
269-3]
gi|239528609|gb|EEQ67610.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii 1153]
gi|260560653|gb|EEX26631.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii
SJ-7A-US]
gi|281303316|gb|EFA95496.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
208-1]
Length = 422
Score = 130 bits (325), Expect = 4e-28, Method: Composition-based stats.
Identities = 60/382 (15%), Positives = 125/382 (32%), Gaps = 53/382 (13%)
Query: 1 MRQFLVII-----------------AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIA 43
M++F I + ++I + + +D TG V+
Sbjct: 1 MKRFFKTIICLLSFLLISSLALTGGTVFASTSINNVNANEAKLNVKAAITIDQKTGEVLY 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKG 99
AS++KL+T Y+ +K K +T +KN + SN ++
Sbjct: 61 AKNAAKALPIASMSKLITIYLTLQAIKNGKLSWNQKLTPTKNIVKLSNNSDYSNVPLQEK 120
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
T+ + +++SAN + +A+++ +++ V M K ++ G+
Sbjct: 121 HQYTVKQLYEASLIESANGAVMMLAQAVYGSQENAVNQMRTLLKKWQINGAQIYTTCGLK 180
Query: 160 QHGHYTTAR--------------DMAILSWRIKTDFPQYMHYFQIKGLEIKG----KKYP 201
+ A +A + + TD+P+ + ++ L+ K K
Sbjct: 181 NGEVGSDAYPGAGKNVENEVPAVGVAKIVDHLLTDYPEVLSTSKLAELDFKDGSTVTKMK 240
Query: 202 NTNWAVGTFLGA------DGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNT 251
N NW + DG+KTG + +G + + LI +++GA +
Sbjct: 241 NWNWMLKGLSQYDSEYPLDGLKTGTSEKAGACFAGTLKYKGRRLITIVMGAKHVDGTDPS 300
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
R + +L + N + + + N +K+ +
Sbjct: 301 RFVQTKKMLDYVYSNYQLY-IYKKGTQLANLKGVKVADGNQKISNLVVKKDSGIWQKTSS 359
Query: 312 EAK---DKESHFIDFEKITLLK 330
K K +K L
Sbjct: 360 TGKLTFSKSEIEAPIKKGQLAG 381
>gi|42518607|ref|NP_964537.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii NCC
533]
gi|41582892|gb|AAS08503.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii NCC
533]
Length = 308
Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats.
Identities = 59/299 (19%), Positives = 120/299 (40%), Gaps = 35/299 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
+++L +I++ + + F + + ++ G I
Sbjct: 10 KKYLWLISLVIAAICFFVWKNNFNSNRMPANYHADQVDLNVKAAVAINAKDGSTIYAKNA 69
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ AS+TKL+T Y+ +KEKK T +T ++ + + +
Sbjct: 70 NQSLPIASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDLGSNPDYASVPLRLGQKYT 129
Query: 108 LKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-- 161
++ L KSAN+ A +A ++ +E F+ M ++ L+ F+ G+ +
Sbjct: 130 VRELYDAALIKSANNAARLLAIAVSGSETNFLNQMRQQARKWKLNNAKFVTVDGLPEKKK 189
Query: 162 ---------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ +A DMAI++ ++ T++P+ ++ ++ + N+N +
Sbjct: 190 NFLGMTTTVENKMSANDMAIVARKLITNYPEILNTTKLARAYFQNTLMTNSNKMLNGLSY 249
Query: 213 ------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
DG+KTG T +G + + + +I VILGA + N R + LLS F
Sbjct: 250 YDSTFPVDGLKTGTTDGAGSCFTCTVNKNGKRVITVILGAENDNERFVETKKLLSYCFN 308
>gi|293397160|ref|ZP_06641434.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582]
gi|291420631|gb|EFE93886.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582]
Length = 307
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 59/281 (20%), Positives = 106/281 (37%), Gaps = 23/281 (8%)
Query: 1 MRQFLVIIAMAMLSN-------------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYP 47
M+ ++++ + L + + ++D ++ V+ P
Sbjct: 1 MKIRVLVLTLLALQSGVGLAPRALASESATALHATQPELASGSAMVVDMSSHKVLYARNP 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D AS+TKLMTA V MLT I + S + S ++ +
Sbjct: 61 DEVVPIASITKLMTAMVTLDAHLPLDEMLTVDIHQTPE---MKGVYSRVRLNSEISRKDM 117
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
L L ++ S N A ++A F+ MN +K LG++ TH++ G+ + +TA
Sbjct: 118 LLLALMSSENRAAASLAHHYPGGYNAFISAMNAKAKALGMTRTHYVEPTGL-SIHNVSTA 176
Query: 168 RDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFT 221
RD++ L + + + NTN V KTGFT
Sbjct: 177 RDLSKLLLATKQYPLIGQLSTTTERMASFKDPNYTLPFRNTNHLVYNPKWNIQLTKTGFT 236
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G + + G++S+ V+L A + T ++ L S
Sbjct: 237 NQAGHCLAMRTMIGNRSVSLVVLDAFGKYTHFADASRLRSW 277
>gi|217965981|ref|YP_002351659.1| beta-lactamase [Listeria monocytogenes HCC23]
gi|217335251|gb|ACK41045.1| beta-lactamase [Listeria monocytogenes HCC23]
gi|307572402|emb|CAR85581.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
monocytogenes L99]
Length = 272
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 57/244 (23%), Positives = 110/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASL+KLMTA+++ + + + + +
Sbjct: 29 LSANAAAVYSVENGKPLYEQNADKVMPIASLSKLMTAFLILEAVDNNELSWDETLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MN + L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYNAMLTMSANDAAETLG--DRLDGADFPKEMNRQATKL 146
Query: 146 GLSA-THFMNAHGVVQHGHY--TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201
G+S+ T+F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSRTNFVSASGLDVDGKTAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN +G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|229183569|ref|ZP_04310793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
gi|228599979|gb|EEK57575.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
Length = 407
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 73/301 (24%), Positives = 127/301 (42%), Gaps = 15/301 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + T +D TG V+ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPKEGPNVFSQFATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 131 FANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITR-GVQKYPEILQAMNTKRT 189
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 190 TVTTSRQTVSIFNKSTYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 248
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E N
Sbjct: 249 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVK 308
Query: 308 T 308
T
Sbjct: 309 T 309
>gi|256852167|ref|ZP_05557553.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii
27-2-CHN]
gi|260661800|ref|ZP_05862711.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii
115-3-CHN]
gi|282933532|ref|ZP_06338903.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
208-1]
gi|297205668|ref|ZP_06923064.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus jensenii
JV-V16]
gi|256615213|gb|EEU20404.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii
27-2-CHN]
gi|260547547|gb|EEX23526.1| d-alanyl-d-alanine carboxypeptidase [Lactobacillus jensenii
115-3-CHN]
gi|281302346|gb|EFA94577.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
208-1]
gi|297150246|gb|EFH30543.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus jensenii
JV-V16]
Length = 422
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 60/382 (15%), Positives = 130/382 (34%), Gaps = 53/382 (13%)
Query: 1 MRQFLVII-----------------AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIA 43
M++F I ++ ++I + + +D TG V+
Sbjct: 1 MKRFFKAIICLLSFLLVSSLALTAGTVSASTSINNINADEVNLDVKAAITIDKKTGEVLY 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKG 99
AS++KL+T Y+ +K+ K +T +KN + SN ++
Sbjct: 61 AKNAAQALPIASMSKLITIYLTLQAIKDGKLSWNQKLTPTKNIVKLSNNSDYSNVPLQEK 120
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
T+ + +++SAN + +A+++ +++ V M K ++ G+
Sbjct: 121 HQYTVKQLYEASLIESANGAVMMLAQAVYGSQENAVNQMRTLLKKWNITDAQIYTTCGLK 180
Query: 160 QHGHYTTAR--------------DMAILSWRIKTDFPQYMHYFQIKGLEIKG----KKYP 201
+ A +A + + TD+P+ ++ ++ L+ K K
Sbjct: 181 NGEVGSDAYPGAGKNVENEIPAVGVAKIVDHLLTDYPEILNTSKLAELDFKDGSTVTKMQ 240
Query: 202 NTNWAVG---TFLGAD---GMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNT 251
N NW + + A G+KTG + +G + + LI +++GA +
Sbjct: 241 NWNWMLKGLSQYDSAYPLDGLKTGTSEKAGACFAGTLKYKGRRLITIVMGAKHADGTDPS 300
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
R + +L + N + + + N +K+ +
Sbjct: 301 RFTQTKKMLDYVYNNYQLY-IYKKGTQLTNLKGIKVNDGNQKIANLVVKKDTGIWQKTSS 359
Query: 312 EAK---DKESHFIDFEKITLLK 330
K K + +K L
Sbjct: 360 TGKLAFSKSAIEAPIKKGQLAG 381
>gi|304385702|ref|ZP_07368046.1| serine-type D-Ala-D-Ala carboxypeptidase [Pediococcus acidilactici
DSM 20284]
gi|304328206|gb|EFL95428.1| serine-type D-Ala-D-Ala carboxypeptidase [Pediococcus acidilactici
DSM 20284]
Length = 415
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 67/369 (18%), Positives = 144/369 (39%), Gaps = 41/369 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA---------ETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L++IA +L + A +D+ TG V+ E + D
Sbjct: 1 MKKVLLVIATLLLFATGVTPAAAATQTSSLVNPEITAKSALAIDSETGQVLYEKHADQVL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNA 107
AS++K+++AY++ ++ K P+ I+ + ++ + N G + T+ N
Sbjct: 61 PIASMSKVLSAYLIMKSVQSGKMRWDQPVKINADIAKISENSELTNVPLTAGKSYTVKNL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------- 158
L ++ SAN +A+ ++ + +KFV M T ++ G+ NA G+
Sbjct: 121 LDASLIYSANAAIIALGKAQAGSSRKFVDKMRATVRSWGIKDAKLYNAAGLLENQVGAEK 180
Query: 159 -----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTN---WA 206
+ +A DMA++ + +FP+ + +I+ L+ N N
Sbjct: 181 YPNSPKNAENQMSANDMAVVIQHVLKEFPEILQITKIQKLDFDTGSGKVTMINHNELLPG 240
Query: 207 VGTFLGAD---GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
+ G+KTG + A+G + A+ + +I+V+LGA + R + ++
Sbjct: 241 GAQYDHQYQLDGLKTGTSLAAGEDFAATGKVNQRRIISVVLGAKT-DQRFTDTKAIWQAL 299
Query: 264 FYNKTDRKKINYIIKDFYQ--QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES-HF 320
N T K +++ + + + ++ + K K +
Sbjct: 300 MTNLTVVKTNLKNQASVVMDSAKQRQVKLQLAQPLAYWKAKKGGQMPKLDQVKLKSAKTK 359
Query: 321 IDFEKITLL 329
+K ++
Sbjct: 360 APVDKNQVI 368
>gi|229143980|ref|ZP_04272397.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
gi|228639543|gb|EEK95956.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
Length = 405
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 75/306 (24%), Positives = 126/306 (41%), Gaps = 13/306 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG V+ + H PAS TK++TA ++ K
Sbjct: 14 VAPPPAEGPNVFSQFATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTK----- 68
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 69 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 128
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 129 FANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYDMAMITKGVQKYPEILQAMNTKRTT 188
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + G KTGFT + +V + +I+V++ A R
Sbjct: 189 VTTSRQTVSIFNKSNFFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVM-ASQRPE 247
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F T + ++ K Y N S E+ + E N T
Sbjct: 248 IYEDLKQMAEYSFGQFTKQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKT 307
Query: 309 QMKEAK 314
+ A
Sbjct: 308 IFRAAS 313
>gi|320008978|gb|ADW03828.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
flavogriseus ATCC 33331]
Length = 420
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 49/289 (16%), Positives = 96/289 (33%), Gaps = 19/289 (6%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + + + D G V+A + PAS K++ A V L+ K LT
Sbjct: 65 APVLPKDLSARSWIVADAEDGQVLASHNAHWRLPPASTLKMLFADTVLPALQPK--TLTH 122
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T + + S+ K + L L + + + AV + + V M
Sbjct: 123 LVTEDELSGVGEGSSLVGVKEDHSYTVHDLWLGVFLRSGNDAVHVLSEMYGGVPATVAAM 182
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ--------- 189
++ L T ++ G ++A D+ + + +
Sbjct: 183 QRHAEELQALDTTVVSPDGYDAPRQVSSAYDLTLFARSGMQKADFREYAATATAEFPGEV 242
Query: 190 IKGLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
KG + K + NTN + + G G+K G+T +G A + + L+ +
Sbjct: 243 KKGKKRKSFEIQNTNRLITGDIGVEPYKGIAGVKNGYTTHAGNTFTGIAERDGRVLLVTV 302
Query: 244 LGALDRNTR--NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
+ + K +A+LL GF + ++ P
Sbjct: 303 MNPSSEESHAVYKEAAALLDWGFAASGKVTPVGELVPPKSAVVSKGSEP 351
>gi|324326527|gb|ADY21787.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 338
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F ++ +++ + F + L+D+N+ VI + + P A+L
Sbjct: 4 LKKFAILFLSFVITTLIVLYFYLYVNGPIIQAKSAILIDSNSSEVIYKKNEEIPIQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L E K L + IS S T+ + L L +
Sbjct: 64 SKLMTEYIVMEKLNEGKIQLDELVKISNEVFRAETSPIQATSKDKTTVRDLLHALFLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E F MN +K L LS NA G+ + TTA D+A
Sbjct: 124 NRSALALAEHIAGNEDNFTLLMNEKAKQLKLSQPSPFLNATGMNNDTNKQSTTTAIDVAK 183
Query: 173 LSWRIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCAS 224
L+ ++ TDFP ++ ++ K NTN + G DG++T F
Sbjct: 184 LATQLVTDFPDVLNITKLTSYQFTFNDSKVFNTNKMIYSLNKNIKLQGVDGLQTSFLING 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V +A +GD LI+VIL + + N+ + LL GF
Sbjct: 244 NYSFVGTAKRGDTRLISVILDSNEENSTFIETKKLLQYGFD 284
>gi|229172016|ref|ZP_04299581.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
gi|228611359|gb|EEK68616.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
Length = 407
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 75/327 (22%), Positives = 131/327 (40%), Gaps = 17/327 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG V+ H PAS+TK++TA ++ K
Sbjct: 16 VAPPPAEGPNVFSQFATTIDAKTGDVLYNKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGNVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 131 FAHMMNEKAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITR-GVQKYPEILQAMNTKRT 189
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 190 TVTTSSQTVSIFNKSTYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 248
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E N
Sbjct: 249 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKATYLNKDIDSELEKSAELMLKKDEGKNVR 308
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKIT 334
T + A + + K +
Sbjct: 309 TIFRAASLDKDSL--YHKGIHRGEVVG 333
>gi|229133606|ref|ZP_04262433.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
gi|228650006|gb|EEL06014.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
Length = 338
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 77/274 (28%), Positives = 122/274 (44%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + TL+DTN+G ++ + + P A+L+KLMT Y
Sbjct: 11 LLSFLITALIVLYFYLYVNGPIIQAKSATLIDTNSGEIVYKKNEETPIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ L E K L + IS S T+ + L L + N A+A+
Sbjct: 71 IALEQLNEGKIQLDELVKISNEVFRAETSPIQVTSKDKTTVRDLLHALFLTGNNRSALAL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E F MN+ +K L LS NA G+ + TT+ D+A L+ ++
Sbjct: 131 AEHIAGNEDNFTLLMNDKAKQLKLSQPSPFLNATGINNDTNKQSTTTSIDVAKLATQLVK 190
Query: 180 DFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCASGFNIVAS 231
DFP ++ ++ K K NTN + G DG++T F+ ++ V++
Sbjct: 191 DFPDVLNVTKLTSYQFTFKDSKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNGNYSFVST 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A +GD LI+VIL A D N+ + LL GF
Sbjct: 251 ATRGDTRLISVILDAGDENSTFIETKKLLQYGFD 284
>gi|229149576|ref|ZP_04277808.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
gi|228633922|gb|EEK90519.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
Length = 405
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 75/306 (24%), Positives = 126/306 (41%), Gaps = 13/306 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG V+ + H PAS TK++TA ++ K
Sbjct: 14 VAPPPAEGPNVFSQFATTIDAKTGDVLYDKNAYHRAYPASTTKVLTAILLMEHTK----- 68
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 69 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 128
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 129 FANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYDMAMITKGVQKYPEILQAMNTKRTT 188
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + G KTGFT + +V + +I+V++ A R
Sbjct: 189 VTTSRQTVSIFNKSNFFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVM-ASQRPE 247
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F T + ++ K Y N S E+ + E N T
Sbjct: 248 IYEDLKQMAEYSFGQFTKQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKT 307
Query: 309 QMKEAK 314
+ A
Sbjct: 308 IFRAAS 313
>gi|49477173|ref|YP_035504.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|196035444|ref|ZP_03102849.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
W]
gi|196046527|ref|ZP_03113752.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
03BB108]
gi|225863238|ref|YP_002748616.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
03BB102]
gi|49328729|gb|AAT59375.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|195992121|gb|EDX56084.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
W]
gi|196022711|gb|EDX61393.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
03BB108]
gi|225788080|gb|ACO28297.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102]
Length = 428
Score = 129 bits (324), Expect = 5e-28, Method: Composition-based stats.
Identities = 77/359 (21%), Positives = 139/359 (38%), Gaps = 35/359 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ L I + L + P + T +D TG ++
Sbjct: 5 KKILAFITVICLFFLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFATTIDAKTGDILY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS+TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 65 DKNAHHRAFPASMTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKT 218
HYTT DMA+++ +P+ + K + + + + T+ + G KT
Sbjct: 180 NHYTTPYDMAMITR-GVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGGKT 238
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
GFT + +V + +I V++ A R + + F + ++
Sbjct: 239 GFTNEARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMADYSFGQFVKQTVLDKHSW 297
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
K Y + S E+ + E N T + A + + K +
Sbjct: 298 HQKTTYLNKDIDSELEKSAELMLKKDEGKNVKTTFRAASLDKDSL--YHKGIHRGEVVG 354
>gi|168215602|ref|ZP_02641227.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens NCTC 8239]
gi|182382030|gb|EDT79509.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens NCTC 8239]
Length = 423
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 68/349 (19%), Positives = 127/349 (36%), Gaps = 34/349 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++ L I +A+ ++F Y LD +TG +I D P
Sbjct: 6 KKLLSSILIALSVSLFTPTKATVQAAEISQPNIVGKYAVTLDYDTGEIIYAKGIDEKAYP 65
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK+MT+ + + + T ++ S G M ++ +K L++
Sbjct: 66 ASTTKVMTSLLFAEHASKNDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNANDLMKALLM 125
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND A IA+ + + +KF MN+ K LGL THF+ +G+ HY+TA D+A++
Sbjct: 126 FSANDAAAVIADGVAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHYSTAYDLAVI 185
Query: 174 SWRIKTDFPQYMHY---FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + K N N +G G G KTGFT +G +V+
Sbjct: 186 LQNAYKNPWVSETMALKDSDITVNGKKVLLENRNKELGI-DGNIGGKTGFTTPAGRCLVS 244
Query: 231 SAIQGDQSLIAVILGAL---DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + +I +L + ++ + + + + +
Sbjct: 245 VYERNGRKIIGAVLNSQYDAKDEIVFNDMNKIIDYSY---------SVDKVPYIKAGTTI 295
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + ++ + ++ I KN + +K
Sbjct: 296 DTIPVEYKLFRWFGPTKKIDVPFVATEN----------IDYYKNYVNEK 334
>gi|218902481|ref|YP_002450315.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH820]
gi|218536407|gb|ACK88805.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH820]
Length = 428
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 76/359 (21%), Positives = 139/359 (38%), Gaps = 35/359 (9%)
Query: 2 RQFLVIIAMAMLSN------------------IFPFLSIAETNKLPYYTLLDTNTGHVIA 43
++ L I + L + P + T +D TG ++
Sbjct: 5 KKILAFITVICLFFLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFATTIDAKTGDILY 64
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGST 101
+ H PAS+TK++TA ++ K T S+ A + SN F+ G T
Sbjct: 65 DKNAHHRAFPASMTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGET 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ +G+
Sbjct: 120 INRNTALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDP 179
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKT 218
HYTT DMA+++ +P+ + K + + + + T+ + G KT
Sbjct: 180 NHYTTPYDMAMITR-GVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPYSIGGKT 238
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY--- 275
GFT + +V + ++ V++ A R + + F + ++
Sbjct: 239 GFTNEARNTLVLLNEKDGNRIVNVVM-ASQRPEIYEDLKQMADYSFGQFVKQTVLDKHSW 297
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
K Y + S E+ + E N T + A + + K +
Sbjct: 298 HQKTTYLNKDIDSELEKSAELMLKKDEGKNVKTTFRAASLDKDSL--YHKGIHRGEVVG 354
>gi|295101851|emb|CBK99396.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
L2-6]
Length = 429
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 75/348 (21%), Positives = 128/348 (36%), Gaps = 18/348 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++++ A+ + I + L + +TG I D ASLTK+MTA
Sbjct: 17 LVLMVCAALPGFAAYQMPIQTASDTESVYLFNLDTGKPILRQNSDQQRYIASLTKMMTAL 76
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
+ K+ A +T P ++++ + S + G T+ + L L+V SAND A
Sbjct: 77 LFLESGKDMNAEITIPTSLTQEFKDIQNANGSTMNLRIGETVRRIDLLYGLLVASANDAA 136
Query: 121 -VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
V ++ FV MN +K LG + T F HG+ +G+ +TA D+A ++
Sbjct: 137 SVIASDVSGGDLTAFVAQMNARAKELGCTDTTFSCVHGLYDYGNVSTAEDLAKIAAACYA 196
Query: 180 DFPQYMHYFQIKGL------EIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNI 228
+ + + +TN GMKTGFT +G
Sbjct: 197 NETYMQAANTLTYTLPATNLHQNERTIKSTNLMLDPEYAYHRDYVRGMKTGFTTLAGRCF 256
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI--NYIIKDFYQQNLS 286
V A Q + V+LG+ D N + A +L F + +DR+ + ++
Sbjct: 257 VTFAQQDGHTYGLVVLGS-DMNNIYRECAEILDWAFSSFSDRQLVDTETVLTTVPLTKCR 315
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
E + E ES ++ +L
Sbjct: 316 TEEAVELYAASGLSGYGHADDEVTFEFSVPESTSATVKEGAVLGTATV 363
>gi|110801081|ref|YP_696655.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens ATCC 13124]
gi|110675728|gb|ABG84715.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens ATCC 13124]
Length = 423
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 69/349 (19%), Positives = 127/349 (36%), Gaps = 34/349 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++ L I +A+ ++F Y LD +TG +I D P
Sbjct: 6 KKLLSSILIALSVSLFTPTKATVQAAEISQPNIVGKYAVTLDYDTGEIIYAKGIDEKAYP 65
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK+MT+ + + + T ++ S G M ++ +K L++
Sbjct: 66 ASTTKVMTSLLFAEHASKNDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNANDLMKALLM 125
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND A IA+ L + +KF MN+ K LGL THF+ +G+ HY+TA D+A++
Sbjct: 126 FSANDAAAVIADGLAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHYSTAYDLAVI 185
Query: 174 SWRIKTDFPQYMHY---FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + K N N +G G G KTGFT +G +V+
Sbjct: 186 LQNAYKNPWVSETMALKDSDITVNGKKVLLENRNKELGI-DGNIGGKTGFTTPAGRCLVS 244
Query: 231 SAIQGDQSLIAVILGAL---DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + +I +L + ++ + + + + +
Sbjct: 245 VYERNGRKIIGAVLNSQYDAKDEIVFNDMNKIIDYSY---------SVDKVPYIKAGTTI 295
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + ++ + ++ I KN + +K
Sbjct: 296 DTIPVEYKLFRWFGPTKKIDVPFVATEN----------IDYYKNYVNEK 334
>gi|295103732|emb|CBL01276.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
SL3/3]
Length = 430
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 70/347 (20%), Positives = 127/347 (36%), Gaps = 16/347 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
V ++ + + + + L + +TG I D ASLTKLMTA
Sbjct: 17 LAVAVSAVLPVFAVYPMPVQTATETEAVYLFNADTGKTILSQNADQQKYVASLTKLMTAL 76
Query: 64 VVFSFLKE---KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ K+ + + T K+ + + G T+ + L +++ SAND A
Sbjct: 77 LLVESGKDLNGEVTVPTDLTQEFKDIQNANGTTMGLRIGETVRRIDLLNAMLIISANDAA 136
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
IA + + FVQ MN + LG + T+F AHG+ +G+ +TA+D+A ++ +
Sbjct: 137 SVIAWDVGGSVVGFVQQMNARAAELGCTGTNFTCAHGLFDYGNVSTAQDLAKIAAACAEN 196
Query: 181 FPQY----MHYFQIKGLEIKGKKYPN------TNWAVGTF-LGADGMKTGFTCASGFNIV 229
+ + ++ +Y N + +K GFT +G IV
Sbjct: 197 QTFAQVAGTASYVLPATNLRKAEYTISSSNSLMNSESANYREYVKWVKGGFTTLAGRCIV 256
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN-YIIKDFYQQNLSNE 288
A A Q + VILG + L F + DR ++ + N
Sbjct: 257 AFAQQDGHNYGLVILGCDTPDHLFTACDDLFDWAFASFADRPLVDTKTVLTTVDLNKCRT 316
Query: 289 VPNISEEVCTTQKEIINYNTQMKEA-KDKESHFIDFEKITLLKNKIT 334
P + + + ++ + ES ++ L
Sbjct: 317 EPAVELYAAAPVSGYGHSDDKVSYSFDLPESVSATVKEGQKLGTATV 363
>gi|90962503|ref|YP_536419.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
salivarius UCC118]
gi|90821697|gb|ABE00336.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
salivarius UCC118]
Length = 384
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 65/363 (17%), Positives = 138/363 (38%), Gaps = 35/363 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ +L+++ + + + A+ ++D TG V+ + + + ASLTK
Sbjct: 6 KNWLILVMLGIAIITGSGIIRGVEADKIDAKAAYMIDAGTGQVLYQQNANSKYPIASLTK 65
Query: 59 LMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
++T V+ + +K I +S A+ + SN +G + T+ + ++ +++
Sbjct: 66 ILTLAVIMKDIHNQKLSWNQKIKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIV 125
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------Q 160
SA+ A+A + + F + M + G++ N G+
Sbjct: 126 SADGSTEALALVDAGSVQAFNEKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDD 185
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--------- 211
+ +A+D+A++S + ++P+ + + K ++ K N ++
Sbjct: 186 QENKFSAKDIALISKYLVNNYPEVIDITKQKNVDFKISADQTYNMENINYMLEGSYAAPK 245
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
DG+KTGFT +G+ V + Q +I VIL A D N + + ++ N
Sbjct: 246 NGTIDGLKTGFTDEAGYCFVGTGTFNGQRVITVILNASDYNKQFSETNKMIESVMNN--- 302
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
K +N +Q L E +++ K + K E K +
Sbjct: 303 DKVVNTKDIKSVKQALKKEKLKVNDTNIWVTKNTDPKQIKAKLTLSNEKIKAKNAKNEKV 362
Query: 330 KNK 332
Sbjct: 363 GTI 365
>gi|116334615|ref|YP_796142.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
gi|116099962|gb|ABJ65111.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
Length = 439
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 72/365 (19%), Positives = 134/365 (36%), Gaps = 41/365 (11%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+ + ++ S + +D TG ++ + D AS+TKL++ Y+
Sbjct: 22 FSTLGTTVTAHAASTNSTTVNLQAKAGIAVDAKTGQILYDKNSDQSLPVASMTKLLSVYL 81
Query: 65 VFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
V + + K IT++K SN + G + T+ + + ++ SAN
Sbjct: 82 VLDAIHDGKLKWDQKITVNKATAKVAQNTNLSNVPLRAGHSYTVKSLYQASLIYSANGAI 141
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTT 166
A+ ++ + FV M +K LG++ NA G+ + +
Sbjct: 142 EALGTAVAGSPHAFVTKMRAEAKTLGMTNAKIYNACGLTNKQVGKLGYSNVKGSTENEWS 201
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWA------VGTFLGADG 215
A D A L+ + +P+ + IK + K N NW + L DG
Sbjct: 202 AADQAKLAVALVNKYPEVLKTTSIKKMWFEKGTSDATKMENWNWMLKGLSASYSKLHVDG 261
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYNKTDRK 271
+KTG + A+G N +A +I V+L A R K + ++S + N
Sbjct: 262 LKTGTSDAAGANFTGTANNNGNRIITVVLHAAHKSDTDPARFKQTQKMMSYVYNNFKTVT 321
Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
Q ++ + T K + ++ D+ + + T LK+
Sbjct: 322 Y------KAGSQITGSKTVKTHDAKQLTAKTALASGIKLWIRDDQVASNV--HSTTQLKS 373
Query: 332 KITKK 336
K+T K
Sbjct: 374 KLTTK 378
>gi|229138063|ref|ZP_04266661.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
gi|228645408|gb|EEL01642.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
Length = 407
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 75/327 (22%), Positives = 132/327 (40%), Gaps = 17/327 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + T +D TG V+ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPKEGPNVFSQFATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 131 FANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITR-GVQKYPEILQAMNTKRT 189
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + + + G KTGFT + +V + +I V++ A R
Sbjct: 190 TVTTSRQTVSIFNKSIYFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 248
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S EV + E N
Sbjct: 249 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAEVMLKKDEGKNVR 308
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKIT 334
T + A + + K +
Sbjct: 309 TIFRAASLDKDSL--YHKGIHRGEVVG 333
>gi|269836472|ref|YP_003318700.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter
thermophilus DSM 20745]
gi|269785735|gb|ACZ37878.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter
thermophilus DSM 20745]
Length = 550
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 74/322 (22%), Positives = 126/322 (39%), Gaps = 19/322 (5%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + ++ +TG V+ + D PASLTK+ TA V
Sbjct: 28 TGAVVAADSPPDIAAAHAVVVSADTGEVLFDKGMDAETAPASLTKIFTAAVALETAP--- 84
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
L ITI+++ S G +TL L +++ S ND A+AIA L +
Sbjct: 85 --LDQLITIAED-DLVGESAMGLVVGQDVTLRTLLYGMMLPSGNDAAMAIARGLSELSDG 141
Query: 134 --------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
F++ +N+ ++ LGL+ T +N HG+ + GH ++ARD+A ++ + P++
Sbjct: 142 SSGESIAPFMERVNDLAQRLGLTHTRLVNPHGLDEPGHVSSARDIAAITMYALGN-PEFR 200
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+G + N N + ++ G G KTG T +G+ +V A + ++IAV+LG
Sbjct: 201 RIIGSPYYVDEGFELYNNNELLTSYTGLIGGKTGITDEAGYCLVEVAQRDGHTIIAVVLG 260
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
+ + + SLL GF ++ V T E
Sbjct: 261 S-TIDDWYTDAISLLDYGFA---TLAAAPSDPARPRITLAPATPAVVTPTVQTPSTEGSA 316
Query: 306 YNTQMKEAKDKESHFIDFEKIT 327
H D E
Sbjct: 317 LTVDRVADTTAVVHAADAEPGG 338
>gi|168208677|ref|ZP_02634302.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens B str. ATCC 3626]
gi|170713013|gb|EDT25195.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens B str. ATCC 3626]
Length = 423
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 69/349 (19%), Positives = 127/349 (36%), Gaps = 34/349 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++ L I +A+ ++F Y LD +TG +I D P
Sbjct: 6 KKLLSSILIALSVSLFTPTKATVQAAEISQPNIVGKYAVTLDYDTGEIIYAKGIDEKAYP 65
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK+MT+ + + + T ++ S G M ++ +K L++
Sbjct: 66 ASTTKVMTSLLFAEHASKNDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNANDLMKALLM 125
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND A IA+ L + +KF MN+ K LGL THF+ +G+ HY+TA D+A++
Sbjct: 126 FSANDAAAVIADGLAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHYSTAYDLAVI 185
Query: 174 SWRIKTDFPQYMHY---FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + K N N +G G G KTGFT +G +V+
Sbjct: 186 LQNAYKNPWVSETMALKDSDITVNGKKVLLENRNKELGI-DGNIGGKTGFTTPAGRCLVS 244
Query: 231 SAIQGDQSLIAVILGAL---DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + +I +L + ++ + + + + +
Sbjct: 245 VYERNGRKIIGAVLNSQYDAKDEIVFNDMNKIIDYSY---------SVDKVPYIKAGTTI 295
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + ++ + ++ I KN + +K
Sbjct: 296 DTIPVEYKLFRWFGPTKKIDVPFVATEN----------IDYYKNYVNEK 334
>gi|302035815|ref|YP_003796137.1| putative d-alanyl-D-alanine carboxypeptidase [Candidatus Nitrospira
defluvii]
gi|300603879|emb|CBK40211.1| putative D-alanyl-D-alanine carboxypeptidase [Candidatus Nitrospira
defluvii]
Length = 309
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 69/245 (28%), Positives = 109/245 (44%), Gaps = 13/245 (5%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L + TG + + + +PASLTK+M+A V+ + L +T+S
Sbjct: 63 VPAHSILLKELKTGTTLYQFESEKRLSPASLTKIMSALVILEY-----GHLDDEVTVSPK 117
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A+ ++ + G L++ LK +++ SAND +A +E + E +FV MN + L
Sbjct: 118 AARAHKTHLRLRTGQIFRLEDLLKAMLIVSANDACLAASEHVGGDEARFVDLMNAKAAAL 177
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-----PQYMHYFQIKGLEIKGKKY 200
L THF NA G HY+TA D+A LS + + E +
Sbjct: 178 QLHNTHFSNACGFDAPEHYSTAEDLAKLSEIALHHPVFKELVREEREIIMPINEHRAYVL 237
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
TN +G G G+KTGFT +G ++A Q L+ VIL + R + SL+
Sbjct: 238 RTTNRLLGRIPGVQGVKTGFTSKAGRCLIAKVSQDGSDLLLVILNS---KRRWNTATSLI 294
Query: 261 SMGFY 265
+ G
Sbjct: 295 NYGLR 299
>gi|317047420|ref|YP_004115068.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp.
At-9b]
gi|316949037|gb|ADU68512.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp.
At-9b]
Length = 317
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 10/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++D + G V+ ++PD ASLTKLMTA VV L
Sbjct: 38 PVAQPQIASGSAMIVDLDNGKVLFSSHPDRVRPIASLTKLMTAMVVLDAK----LPLDEM 93
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+++ + +E S K S ++ N L L ++ S N A ++A F++ M
Sbjct: 94 LSVDISHTAEMRGVFSRVKLNSEISRRNMLLLALMSSENRAAASLAHHYPGGYDAFIRAM 153
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG++ TH++ G+ H + + ++ + + +
Sbjct: 154 NAKARALGMTHTHYVEPTGLSIHNVSSAEDLIKLVKATRQYPLIGQLSTTKEDTAVFTHP 213
Query: 199 KY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
Y NTN V KTG+T +G +V + ++ + V+L A + T
Sbjct: 214 SYALPFRNTNHLVYKNDWRIQLTKTGYTDEAGHCLVMRTVINNRPVALVVLDAFGKYTHF 273
Query: 254 KVSASLLSM 262
+ L
Sbjct: 274 ADANRLRDW 282
>gi|110803688|ref|YP_699253.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens SM101]
gi|110684189|gb|ABG87559.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens SM101]
Length = 423
Score = 129 bits (323), Expect = 6e-28, Method: Composition-based stats.
Identities = 68/349 (19%), Positives = 126/349 (36%), Gaps = 34/349 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++ L I +A+ ++F + Y LD TG +I D P
Sbjct: 6 KKLLSSILIALSVSLFAPIKATVQAAEISQPNIVGKYAVTLDYETGEIIYAKGIDEKAYP 65
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK+MT+ + + + T + S G M ++ +K L++
Sbjct: 66 ASTTKVMTSLLFAEHASKNDSFPYTADAKVQQPYTLNDSFGPIPVGEGMNANDLMKALLM 125
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND A IA+ + + +KF MN+ K LGL THF+ +G+ HY+TA D+A++
Sbjct: 126 FSANDAAAVIADGVAGSTEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHYSTAYDLAVI 185
Query: 174 SWRIKTDFPQYMHY---FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + K N N +G G G KTGFT +G +V+
Sbjct: 186 LQNAYKNPWVRETMALKDSDITVNGKKVLLENRNKELGIN-GNIGGKTGFTTPAGRCLVS 244
Query: 231 SAIQGDQSLIAVILGAL---DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + +I +L + ++ + + + + +
Sbjct: 245 VYERNGRKIIGTVLNSQYDAKDEIVFNDMNKIIDYSY---------SVDKVPYIKAGTTI 295
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + ++ + ++ I KN + +K
Sbjct: 296 DTIPVEYKLFRWFGPTKKIDVPFVATEN----------IDYYKNYVNEK 334
>gi|18310958|ref|NP_562892.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
13]
gi|168212989|ref|ZP_02638614.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens CPE str. F4969]
gi|182624439|ref|ZP_02952223.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens D str. JGS1721]
gi|18145640|dbj|BAB81682.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens str.
13]
gi|170715489|gb|EDT27671.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens CPE str. F4969]
gi|177910442|gb|EDT72819.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens D str. JGS1721]
Length = 423
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 68/349 (19%), Positives = 127/349 (36%), Gaps = 34/349 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++ L I +A+ ++F Y LD +TG +I D P
Sbjct: 6 KKLLSSILIALSVSLFTPTKATVQAAEISQPNIVGKYAVTLDYDTGEIIYAKGIDEKAYP 65
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK+MT+ + + + T ++ S G M ++ +K L++
Sbjct: 66 ASTTKVMTSLLFAEHASKNDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNANDLMKALLM 125
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND A IA+ + + +KF MN+ K LGL THF+ +G+ HY+TA D+A++
Sbjct: 126 FSANDAAAVIADGVAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHYSTAYDLAVI 185
Query: 174 SWRIKTDFPQYMHY---FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + K N N +G G G KTGFT +G +V+
Sbjct: 186 LQNAYKNPWVSETMALKDSDITVNGKKVLLENRNKELGI-DGNIGGKTGFTTPAGRCLVS 244
Query: 231 SAIQGDQSLIAVILGAL---DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + +I +L + ++ + + + + +
Sbjct: 245 VYERNGRKIIGAVLNSQYDAKDEIVFNDMNKIIDYSY---------SVDKVPYIKAGTTI 295
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + ++ + ++ I KN + +K
Sbjct: 296 DTIPVEYKLFRWFGPTKKIDVPFVATEN----------IDYYKNYVNEK 334
>gi|255320984|ref|ZP_05362157.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens
SK82]
gi|255301948|gb|EET81192.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter radioresistens
SK82]
Length = 330
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 61/253 (24%), Positives = 97/253 (38%), Gaps = 14/253 (5%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF--LKEKKA 74
+ ++D TG V+ + AS+TKLMTA V ++
Sbjct: 77 STSYVNQPSVNARAALVMDAQTGEVLFSKNTNTALPIASITKLMTAVVTSDARLNMSEEI 136
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L I ++ST + G M L ++KS N A A+A + + F
Sbjct: 137 TLQPIDFIGPK-----KASSTLRAGDKMNRAEVLLFALMKSENPAAAALARTYPGGKPAF 191
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MN ++ LG+ + F + G+ + +ARD+ IL + + + +
Sbjct: 192 VAAMNAKARELGMHSAKFYESTGLDA-RNVASARDLGILVS-AASQYGLIRQFSTTPTYD 249
Query: 195 IKGK----KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K NTN V + KTGF +G +V A + I V+LGA D
Sbjct: 250 FNLGYRVLKSNNTNALVRNGGWNINLSKTGFINEAGRCVVMHATVNQRPAIVVLLGASDT 309
Query: 250 NTRNKVSASLLSM 262
+RN + L S
Sbjct: 310 QSRNNDATRLFSW 322
>gi|262278233|ref|ZP_06056018.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein
[Acinetobacter calcoaceticus RUH2202]
gi|262258584|gb|EEY77317.1| D-Ala-D-Ala-carboxypeptidase penicillin-binding protein
[Acinetobacter calcoaceticus RUH2202]
Length = 271
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 78/241 (32%), Positives = 124/241 (51%), Gaps = 7/241 (2%)
Query: 1 MRQFLVIIAMA-----MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ FL + + L+N E+ + +T++DT +G +IAE+ PAS
Sbjct: 1 MKFFLSLFTLFSIFCTTLTNAALLNIAPESVEAAAWTIVDTQSGQIIAEHNSHVQRAPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
LTK+M AY+ +K K IT + + ++ S K G +++D L LIV
Sbjct: 61 LTKMMVAYIALKEIKAGKLKKEEIITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIV 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++L
Sbjct: 121 MSANDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPPGITMPDHYTTAHDLSLL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A
Sbjct: 181 GQALIKQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTAS 240
Query: 234 Q 234
+
Sbjct: 241 R 241
>gi|225572263|ref|ZP_03781127.1| hypothetical protein RUMHYD_00557 [Blautia hydrogenotrophica DSM
10507]
gi|225040268|gb|EEG50514.1| hypothetical protein RUMHYD_00557 [Blautia hydrogenotrophica DSM
10507]
Length = 357
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 65/324 (20%), Positives = 119/324 (36%), Gaps = 33/324 (10%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D + G V+ E AS TK++T + +T+S A+ P
Sbjct: 1 MDGSNGRVLYEKDGKTVRANASTTKVLTCILALELGDG-----DDVVTVSAKAAAQPDVQ 55
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+G T L++ L L++KS ND AVAIAE L + + F + MN+ +K +G + THF+
Sbjct: 56 LNIVEGETYYLEDLLYSLMLKSHNDSAVAIAEHLGGSVEGFAKMMNDKAKEIGCTDTHFV 115
Query: 154 NAHGVVQHG----HYTTARDMAILSWRIKTDF-----PQYMHYFQIKGLEIKGKKYPNTN 204
+G+ H TTA D+A++ ++ Q Y + N N
Sbjct: 116 TPNGLDASDTGGKHGTTATDLALIMRYAISNPAFLTIAQTREYSFSDISGKRQFVVTNAN 175
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLS 261
+ G KTGFT +G+ V + + ++ I +L +++ + + + +LL
Sbjct: 176 AFLDMMDGVIAGKTGFTADAGYCYVCAWQRDGRTFIVALLACGWPGNKSYKWQDARTLLD 235
Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSN----------------EVPNISEEVCTTQKEIIN 305
G N E P ++ K+
Sbjct: 236 YGMENYQLAAYWKEPSLHVITVKDGIPKSGQLYDTARVNVICECPQKDKDQRILLKKGEK 295
Query: 306 YNTQMKEAKDKESHFIDFEKITLL 329
+ + +++ +
Sbjct: 296 IKMHCETPSMLRAPVKKGQQVGTV 319
>gi|168204840|ref|ZP_02630845.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens E str. JGS1987]
gi|170663667|gb|EDT16350.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens E str. JGS1987]
Length = 423
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 68/349 (19%), Positives = 127/349 (36%), Gaps = 34/349 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++ L I +A+ ++F Y LD +TG +I D P
Sbjct: 6 KKLLSSILIALSVSLFTPTKATVQAAEISQPNIVGKYAVTLDYDTGEIIYAKGIDEKAYP 65
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK+MT+ + + + T ++ S G M ++ +K L++
Sbjct: 66 ASTTKVMTSLLFAEHASKNDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNANDLMKALLM 125
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND A IA+ + + +KF MN+ K LGL THF+ +G+ HY+TA D+A++
Sbjct: 126 FSANDAAAVIADGVAGSAEKFSVMMNDEVKKLGLKNTHFVTPNGLHNDDHYSTAYDLAVI 185
Query: 174 SWRIKTDFPQYMHY---FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + K N N +G G G KTGFT +G +V+
Sbjct: 186 LQNAYKNPWVSETMALKDSDITVNGKKVLLENRNKELGI-DGNIGGKTGFTTPAGRCLVS 244
Query: 231 SAIQGDQSLIAVILGAL---DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + +I +L + ++ + + + + +
Sbjct: 245 VYERNGRKIIGAVLNSQYDAKDEIVFNDMNKIIDYSY---------SVDKVPYIKAGTTI 295
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + ++ + ++ I KN + +K
Sbjct: 296 DTIPVEYKLFRWFGPTKKIDVPFVATEN----------IDYYKNYVNEK 334
>gi|57239549|ref|YP_180685.1| penicillin-binding protein dacF precursor [Ehrlichia ruminantium
str. Welgevonden]
gi|58579535|ref|YP_197747.1| penicillin-binding protein dacF precursor [Ehrlichia ruminantium
str. Welgevonden]
gi|57161628|emb|CAH58557.1| putative exported D-alanyl-D-alanine carboxypeptidase [Ehrlichia
ruminantium str. Welgevonden]
gi|58418161|emb|CAI27365.1| Penicillin-binding protein dacF precursor [Ehrlichia ruminantium
str. Welgevonden]
Length = 290
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 64/283 (22%), Positives = 131/283 (46%), Gaps = 5/283 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFL----SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M + VI+ + +L+ + P + + K + D ++ ++ E+ D + +S+
Sbjct: 2 MLRSFVIVFIYVLTCLLPTINNTYAADIQTKASEIAIFDLSSNIMLFEHNIDRKIHLSSM 61
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
LMT YV FS++K + SK A + + + G + + + L +I SA
Sbjct: 62 NNLMTLYVAFSYMKPGFVRMEDKYIASKEAWQQGGPSIFLRAGQPVPVRDLLDGIITLSA 121
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND ++ +AE + +++ FV+ MN ++ L L++++F N G++ T+ARD+ L+ R
Sbjct: 122 NDASITLAEGIAGSQENFVKEMNQMARKLNLTSSNFTNVTGLLDSNQTTSARDLITLAQR 181
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT-CASGFNIVASAIQG 235
+ DFP+Y H F K L+ +TN + + + DGM T + S +
Sbjct: 182 LFNDFPEYYHLFSKKDLKFNNIYQKSTNTLLNSDIAIDGMAVKNTDQDDNHGAIISIKKD 241
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+ ++ +I G + L++ + + + + + K
Sbjct: 242 GRRILLLINGLENNEELLSEVQLLINYVYNDFSTKTIFQKVNK 284
>gi|270290040|ref|ZP_06196266.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus acidilactici 7_4]
gi|270281577|gb|EFA27409.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus acidilactici 7_4]
Length = 415
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 68/369 (18%), Positives = 144/369 (39%), Gaps = 41/369 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA---------ETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L++IA +L + A +D+ TG V+ E + D
Sbjct: 1 MKKVLLVIATLLLFATGVTPAAAATQTSSLVNPEITAKSALAIDSETGQVLYEKHADQVL 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNA 107
AS++K+++AY++ ++ K P+ I+ + ++ + N G T+ N
Sbjct: 61 PIASMSKVLSAYLIMKSVQSGKMRWDQPVKINADIAKISENSELTNVPLTAGKAYTVKNL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------- 158
L ++ SAN +A+ ++ + +KFV M T ++ G+ NA G+
Sbjct: 121 LDASLIYSANAAIIALGKAQAGSSRKFVDEMRATVRSWGIKDAKLYNAAGLLENQVGAEK 180
Query: 159 -----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTN---WA 206
+ +A DMA++ + +FP+ + +I+ L+ N N
Sbjct: 181 YPNSPKNAENQMSANDMAVVIQHVLKEFPEILQITKIQKLDFDTGSGKVTMINHNELLPG 240
Query: 207 VGTFLGAD---GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
+ G+KTG + A+G + VA+ + +I+V+LGA + R + ++
Sbjct: 241 GAQYDHQYQLDGLKTGTSLAAGEDFVATGKVNQRRIISVVLGAKT-DHRFTDTKAIWQAL 299
Query: 264 FYNKTDRKKINYIIKDFYQ--QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES-HF 320
N T K +++ + + + ++ + K K +
Sbjct: 300 MTNLTVVKTNLKNQASVVMDSAKQRQVKLQLAQPLAYWKAKKGGQMPKLDQVKLKSAKTK 359
Query: 321 IDFEKITLL 329
+K ++
Sbjct: 360 APVDKNQVI 368
>gi|166033039|ref|ZP_02235868.1| hypothetical protein DORFOR_02761 [Dorea formicigenerans ATCC
27755]
gi|166027396|gb|EDR46153.1| hypothetical protein DORFOR_02761 [Dorea formicigenerans ATCC
27755]
Length = 490
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 67/335 (20%), Positives = 121/335 (36%), Gaps = 23/335 (6%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+++ TG ++ D PAS+TK++TA V + T
Sbjct: 81 PQGPGTYGEAGIVMEVGTGAILYAKNIDAHEYPASITKVLTALVALENGQ--LTDNVTFS 138
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE----SLCKTEKKFVQ 136
S + S+ K+G+ +TLD A+ +++ SAN+ A AI E + F++
Sbjct: 139 HDSVAFLQRGDSSVGLKEGNVITLDQAMHAMLLASANEAAYAIGESVGVNAGHDYNWFIE 198
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM-----AILSWRIKTDFPQYMHYFQIK 191
MN+ K LG ++F N +G+ HYT ARDM + Q ++Y
Sbjct: 199 QMNSRCKELGGENSNFANTNGLHDPNHYTCARDMALIGRELFKHPEFFQIVQTLNYTIPA 258
Query: 192 GLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ + + + G KTG+T + ++ A G L+ V+L
Sbjct: 259 SETTEEHVFHQKHKMLQPSNSNYYPYTIGGKTGYTSDALSTLITMADNGQTQLVCVVLRT 318
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
+N + +L F N T + + L+ + + V
Sbjct: 319 HGKNI-YPDTTNLFEYAFNNFTKVDVTTQEKSEDIETFLTEDGQSEPNYVMLPNGVDFTA 377
Query: 307 NTQMKEAKD------KESHFIDFEKITLLKNKITK 335
Q ++ D ++ K K++K
Sbjct: 378 LDQKITQDTEDSSTGIVTYSYDGHELGTAKVKLSK 412
>gi|58617588|ref|YP_196787.1| penicillin-binding protein dacF precursor [Ehrlichia ruminantium
str. Gardel]
gi|58417200|emb|CAI28313.1| Penicillin-binding protein dacF precursor [Ehrlichia ruminantium
str. Gardel]
Length = 290
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 64/283 (22%), Positives = 131/283 (46%), Gaps = 5/283 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFL----SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M + VI+ + +L+ + P + + K + D ++ ++ E+ D + +S+
Sbjct: 2 MLRSFVIVFIYVLTCLLPTINNTYAADIQTKASEIAIFDLSSNIMLFEHNIDRKIHLSSM 61
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
LMT YV FS++K + SK A + + + G + + + L +I SA
Sbjct: 62 NNLMTLYVAFSYMKPGFVRMEDKYIASKEAWQQGGPSIFLRAGQPVPVRDLLDGIITLSA 121
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND ++ +AE + +++ FV+ MN ++ L L++++F N G++ T+ARD+ L+ R
Sbjct: 122 NDASITLAEGIAGSQENFVKEMNQMARKLNLTSSNFTNVTGLLDSNQTTSARDLITLAQR 181
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT-CASGFNIVASAIQG 235
+ DFP+Y H F K L+ +TN + + + DGM T + S +
Sbjct: 182 LFNDFPEYYHLFSKKDLKFNNIYQKSTNTLLNSDIAIDGMAVKNTDQDDNHGAIISIKKD 241
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+ ++ +I G + L++ + + + + + K
Sbjct: 242 GRRILLLINGLENNEELLSEVQLLINYVYNDFSTKTIFQKVNK 284
>gi|295094890|emb|CBK83981.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus sp. ART55/1]
Length = 376
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 64/323 (19%), Positives = 123/323 (38%), Gaps = 23/323 (7%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
LLD TG ++ + D AS TK++T + L +T S AS
Sbjct: 40 ARNAILLDGETGDILYDKCSDEHRPNASTTKILTCILAIEC-----GNLADDVTASSYAS 94
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ P + G TL++ L ++++S ND AV IAE + + + F + MN ++ +G
Sbjct: 95 KMPEVRLGVRDGEKYTLEDMLYAMMLESYNDAAVVIAEHIGGSVQHFAEMMNAKAEEIGC 154
Query: 148 SATHFMNAHGVVQHG----HYTTARDMAILSWRIK---TDFPQYMHYFQIKGLEIKGKK- 199
+T+F+ +G+ H T+A D+ + +++ + K
Sbjct: 155 HSTYFITPNGLDAQDENGVHGTSAEDLVRIMRYCILISPQKDEFLKITRTKSYTFTDNTG 214
Query: 200 -----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251
N N + A KTGFTC +G+ + +A + I +LG N
Sbjct: 215 NRTFACINHNAFLDMMPCALSGKTGFTCDAGYCYIGAAEVEGHTYIWALLGCGWPNNKTY 274
Query: 252 RNKVSASLLSMGFYN--KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
+ K S +L++ + T+ K + S+ + + + + + +
Sbjct: 275 KWKDSRALVAFAQEHTIYTELKAPASPDIRITYSSGSSADGSTATKCRLNRTVTASEGSI 334
Query: 310 MKEAKDKESHFIDFEKITLLKNK 332
K ++ K + +
Sbjct: 335 QYVYKVSDTLKAPVHKGAVAGSL 357
>gi|15827291|ref|NP_301554.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae TN]
gi|221229769|ref|YP_002503185.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae
Br4923]
gi|13092840|emb|CAC30200.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae]
gi|219932876|emb|CAR70785.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium leprae
Br4923]
Length = 411
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 58/278 (20%), Positives = 101/278 (36%), Gaps = 12/278 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + + D N+G VIA P PAS+ K V+ +
Sbjct: 89 IVTAPDTPPVPGDLSAEAWLVADLNSGAVIAARDPHGRHRPASIIK-----VLLAMASIN 143
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + + + G T T++ L L+++S ND A ++A L ++
Sbjct: 144 TLNLNKSVAGTAEDAAAEGTKVGVHDGGTYTINQLLHGLLMQSGNDAAHSLAMQLGGMQQ 203
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+ +N + LG T G+ G T+A D+ + +
Sbjct: 204 ALQK-INVLAAKLGGQDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPSFSNIVATRTF 262
Query: 193 L-----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GA 246
+ G + N N + + GA G KTG+T +G V +A + + L+AV+L G
Sbjct: 263 NFPGPGDHPGYQLENDNQLLYQYPGALGGKTGYTDDAGQTFVGAANRNGRRLMAVLLHGT 322
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
+ +A LL GF + I D
Sbjct: 323 RQPIAPWEQAAHLLDYGFSTAVGTQIGTLIEPDPTVAG 360
>gi|332313242|gb|EGJ26337.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes str.
Scott A]
Length = 244
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 6/243 (2%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ G + E D ASLTKLMTA++V + + + + +
Sbjct: 2 SANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLD 61
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
S + T ++ + ++ SAND A + F + MNN +K LG
Sbjct: 62 DPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGANFPKEMNNQAKKLG 119
Query: 147 LSA-THFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPN 202
+S+ T F++A G+ G +T +D+ +LS ++ + P+ + + K +
Sbjct: 120 MSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLES 179
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
TN ++G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+ +
Sbjct: 180 TNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEV 239
Query: 263 GFY 265
GF
Sbjct: 240 GFK 242
>gi|188588227|ref|YP_001921472.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum E3 str.
Alaska E43]
gi|188498508|gb|ACD51644.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
botulinum E3 str. Alaska E43]
Length = 289
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 72/296 (24%), Positives = 124/296 (41%), Gaps = 29/296 (9%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIA-------ETNKLPYYTLLDTNTGHVIAENYP 47
MR+ + ++ M IF ++A LD + V+ E
Sbjct: 1 MRKSIKNNIVITMLLSIMFFQIFSKAALADSKLKDNFRVNARCAIALDRESKEVLFEQNA 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
AS TK++TA + L + ISKNA+ S +K G + L
Sbjct: 61 YEIVPMASTTKILTAIIAIEQ-----GDLDKKVVISKNAASIRGSKVGYKAGEEVGLKEL 115
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
L+ KS ND A+AIAE+L + + F Q MN+ + +G+ +HF + HG+ + HY++A
Sbjct: 116 TFGLMFKSGNDAAIAIAETLGGSVEGFAQIMNHYATGIGIIDSHFESPHGLDSNSHYSSA 175
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCAS 224
D+A+L+ + + + K Y N N + A+G+KTG+T +
Sbjct: 176 YDLALLTAKGMEFDLFREIVGSKQISKEKYNFTRDYNNINKILWLIPEANGVKTGYTGGA 235
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM-----GFYNKTDRKKINY 275
G +V+S + +I V+L D R + + + F N ++ +
Sbjct: 236 GKCLVSSVNHQGKDIIIVVLNCPD---RWAQTQKIYNHILETVAFENHNIKELVYK 288
>gi|294637382|ref|ZP_06715676.1| penicillin-binding protein 7 [Edwardsiella tarda ATCC 23685]
gi|291089460|gb|EFE22021.1| penicillin-binding protein 7 [Edwardsiella tarda ATCC 23685]
Length = 309
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 53/254 (20%), Positives = 92/254 (36%), Gaps = 10/254 (3%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
++D NT VI ++PD AS+TKLMTA V
Sbjct: 31 TPSAQQRAPLALASGSAMVMDLNTHQVIYASHPDVQVPIASITKLMTAMVALDAHP---- 86
Query: 75 MLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
L I + ++ S + GS T L L ++ S N A +A
Sbjct: 87 DLNEVIAVDIRHTKELKGVFSRVRVGSEQTRREMLLLALMSSENRAAATLAHHYPGGYDA 146
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F++ MN ++ LG++ TH++ G+ + + +L + + + + +
Sbjct: 147 FIRAMNAKARALGMTRTHYVEPTGLSPLNVSSARDLVKLLQATKRYPLISELSTTETQSV 206
Query: 194 EIKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ Y NTN + KTGFT +G + + G + + V+L A
Sbjct: 207 TFRHPTYTETFNNTNHLLRNDKWDIALTKTGFTNQAGHCLAMRTVIGGRPVALVVLDAFG 266
Query: 249 RNTRNKVSASLLSM 262
+ T + L
Sbjct: 267 KYTHFADANRLREW 280
>gi|118617116|ref|YP_905448.1| penicillin-binding protein DacC [Mycobacterium ulcerans Agy99]
gi|118569226|gb|ABL03977.1| penicillin-binding protein DacC [Mycobacterium ulcerans Agy99]
Length = 415
Score = 129 bits (323), Expect = 7e-28, Method: Composition-based stats.
Identities = 57/283 (20%), Positives = 98/283 (34%), Gaps = 12/283 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + + D ++G +IA P PAS+ K++ V
Sbjct: 89 IIAAPDTPPVPGDVSAEAWLVGDLDSGAIIAARDPHGRHRPASIIKVLVVMVSIKE---- 144
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ + + S + G T++ L L++ S ND A A+A L +
Sbjct: 145 -LNQNKAVPGTNDDSAAEGTKVGVNAGGMYTVNQLLHGLLMHSGNDAAHALAIQLGGMQT 203
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-----YMHY 187
+ +N + LG T G+ G T+A D+ + + +
Sbjct: 204 AL-EKINMLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPIFADIVATRTF 262
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GA 246
E G + N N + + GA G KTG+T +G V +A + L AV+L G
Sbjct: 263 DFPGHGEHPGYELENDNHLLYNYPGALGGKTGYTDDAGQTFVGAANHNGRRLFAVLLHGT 322
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
+ +A LL GF + + I D
Sbjct: 323 RQPIAPWEQAAHLLDYGFSTAQGTQIGSLIEPDPSLVAPKETP 365
>gi|302874417|ref|YP_003843050.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulovorans 743B]
gi|307690977|ref|ZP_07633423.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
cellulovorans 743B]
gi|302577274|gb|ADL51286.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulovorans 743B]
Length = 444
Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats.
Identities = 71/360 (19%), Positives = 137/360 (38%), Gaps = 31/360 (8%)
Query: 1 MRQFLV------IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ ++ I++ + + +F Y LD NTG +I D PA
Sbjct: 1 MKKTILTTMATLAISLTLSTKVFSEPLPEPNIVGQYAITLDVNTGEIIYAKNADAKAYPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TKLM+A ++ L ++ + T + +S + G ++ D ALK +++
Sbjct: 61 SITKLMSAILLEKNLSKEDLLTYTANAKVQPSSAINTDRLSVPVGQQISADTALKTMLLA 120
Query: 115 SANDI----AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--HGHYTTAR 168
SAND+ A I + +F+ MN ++ LG+ THF+ ++G+ + H TTA
Sbjct: 121 SANDMTEMVATNIPKRNSNDNTEFIAMMNAEAQRLGMVNTHFVTSNGLDDNTNEHLTTAY 180
Query: 169 DMAILSWRIKTDFP----QYMHYFQIKGLEIKGKKYPNTNWAVG-----TFLGADGMKTG 219
D+ IL + + + I + + NTN V G KTG
Sbjct: 181 DLTILGREVAKNPWTREIWPLKSTIIAIPGLASFEIGNTNQFVYPNFELHDPTCIGSKTG 240
Query: 220 FTCASGFNIVASAIQGDQSLIAVILG---ALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
+T +G +++ + ++ +I V+L + + ++ + ++K +
Sbjct: 241 YTDKAGRCLLSIFERDNRQIIGVVLNSQLSPNDLVAFNDMKQIIDYSYS--AEKKVLEAT 298
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ T K E I + ++ N+I K
Sbjct: 299 DPATGVNTSYK-----KDTTVLTVPVEYKVFKTFGPRKTIEVPVILDDDLSTYTNEINSK 353
>gi|329116466|ref|ZP_08245183.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
NCFD 2020]
gi|326906871|gb|EGE53785.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
NCFD 2020]
Length = 412
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 67/367 (18%), Positives = 147/367 (40%), Gaps = 32/367 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ ++I+++ + + + K D +G V+ E AS TK+
Sbjct: 1 MKKIIMILSLLVSTITITTTSAEDIELKTDSAIAFDIESGKVLYEKNAKKILPVASATKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ +++ K ++P+TIS + ++ T+ +K ++V +A
Sbjct: 61 LTTYMVYKEIEQGKLEWSSPVTISDYPFQLTTNYTISNVPLDARKYTVKQLMKAMLVTNA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH--------------G 162
N A+A+AE + TE FV M + G++ NA G+
Sbjct: 121 NSAAIALAEKIGGTEPIFVDKMKKQLEVWGINDAKLYNATGLPNSILGDNIYPKSKQSAE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A+D+AI++ + T++P+ + Y + G+ + N+ + + G +G+
Sbjct: 181 NKLSAKDLAIITHHLLTEYPEVLKYTSLPKATFDGQDIYSYNYMLEGYPYERVGINGLFL 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKKIN 274
G SG +AS+ +I++++GA + K ++ LL + N +
Sbjct: 241 GSPEKSGPTFIASSKINKMKVISIVIGAHQEDNDVTEPFKTTSLLLDYLYQNFERVTLLK 300
Query: 275 YIIKDFYQQNLSNEVPN------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + P+ E++ +K + ++ K++ + K
Sbjct: 301 KNQVIKDKSFAIKDSPDQSVSISPKEDMTIIKKIGTTHQNEIIYNKNENPFYAPLAKGDT 360
Query: 329 LKNKITK 335
L K
Sbjct: 361 LATAKYK 367
>gi|21674088|ref|NP_662153.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium tepidum TLS]
gi|21647242|gb|AAM72495.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium tepidum TLS]
Length = 474
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 70/278 (25%), Positives = 122/278 (43%), Gaps = 22/278 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWNPA 54
R+ L + + + P + A+ P Y + +T + + D P +PA
Sbjct: 12 RKVLFTLLAFFVLTLIPLTASAKRRPAPEGEDAVAAYIVKETGSPEFLKSKNADTPRSPA 71
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTK+MT + + + +TI A++ P+ + FK G L + +K +V
Sbjct: 72 SLTKIMTCLLAIESGR-----MNDVVTIPLEATQVEPTRAGFKPGEQFRLRDLVKAAMVN 126
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGHYTTARDMA 171
S+ND A AIA L + FV MN ++ LG+S T F N G G+ TTARD+
Sbjct: 127 SSNDAAFAIAIHLGGSLDAFVAMMNARARALGMSHTVFTNPAGYDRGIYAGNRTTARDLV 186
Query: 172 ILSWRIKTDFPQYMHYFQIKGL-----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
IL+ R + K N + + + G+KTG+T +G
Sbjct: 187 ILTERAIRFPEFNAIAKLDRVDFNELSTGKIYSLRTHNKLLERYPYSVGIKTGYTSMAGP 246
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
++A A++ + ++ ++L A R +++++ GF
Sbjct: 247 CLIARALRNGKDMLVIMLSART--DRWSLASTMFDQGF 282
>gi|16804849|ref|NP_466334.1| hypothetical protein lmo2812 [Listeria monocytogenes EGD-e]
gi|224502774|ref|ZP_03671081.1| hypothetical protein LmonFR_09674 [Listeria monocytogenes FSL
R2-561]
gi|16412312|emb|CAD01025.1| lmo2812 [Listeria monocytogenes EGD-e]
Length = 272
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASL+KLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVENGEALYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDEKLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGADFPKEMNNQAKKL 146
Query: 146 GLSA-THFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201
G+S+ T F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN +G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|284042207|ref|YP_003392547.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter
woesei DSM 14684]
gi|283946428|gb|ADB49172.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter
woesei DSM 14684]
Length = 326
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 62/243 (25%), Positives = 109/243 (44%), Gaps = 13/243 (5%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L+D +G V+ + AS+TK+MTA +V K ++ + TP + +
Sbjct: 87 RAGLLVDAGSGRVLWRLEAERRLPIASVTKMMTALLVAERTKPREPVPITPQAV----AY 142
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
G + + L L++ S ND A+A+A+ + + +FV+ MN ++ LGL+
Sbjct: 143 TGSGVGMLPVGRRVQTETLLYGLMLPSGNDAAIALAQHVSGSVARFVRLMNARARELGLT 202
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGKKYPNT 203
T F + G+V G+++ A D+A+L + + N
Sbjct: 203 CTRFASPSGIVDSGNWSCAPDLALLGRELLRHRRLARVVRTPLAVMPLPIRGGRVWLANH 262
Query: 204 NWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + + G +G+KTG+T A+G VAS + + LI V+L + D + + LL
Sbjct: 263 NPLLRMRYAGVEGIKTGYTEAAGRCFVASVRRDGRRLIVVLLNSPDPG---RQARRLLDA 319
Query: 263 GFY 265
GF
Sbjct: 320 GFA 322
>gi|197117367|ref|YP_002137794.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Geobacter
bemidjiensis Bem]
gi|197086727|gb|ACH37998.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase, S11 family
[Geobacter bemidjiensis Bem]
Length = 287
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 72/271 (26%), Positives = 121/271 (44%), Gaps = 20/271 (7%)
Query: 1 MRQF----LVIIAMAMLSNI--FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++F ++ + +L + + + P L+ GH E PA
Sbjct: 1 MKKFSSLRVLTLTAGILFAAVCYADAASSPFVHPPSAYLI-QVNGHTYKERNAHIRRPPA 59
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTK+MTA +V K L + +S+ A+ S ++G +T+ + L ++
Sbjct: 60 SLTKIMTALIVMERCK-----LDEVVVVSRGAARETGSRIGLRRGERLTVRDLLAATLMA 114
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
SAND A+A+ C ++ FV MN ++ L L T F NA G G YTTA D+A+L+
Sbjct: 115 SANDACRALADHACGNQRDFVVQMNARARALQLQNTRFTNACGHDNAGLYTTAHDLALLT 174
Query: 175 WRIKTDFPQ-----YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ + N N +G + GA G+KTG T +G +V
Sbjct: 175 EKAMQKPYFAELVARKEMRIRTLNSKRSYYLRNKNRLIGRYPGAIGVKTGTTPNAGQCLV 234
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
A A + ++ ++ VI+ A R +V+ ++L
Sbjct: 235 AIAEREERKVLLVIMHA---RNRWRVAPAML 262
>gi|251780348|ref|ZP_04823268.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|243084663|gb|EES50553.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 289
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 72/296 (24%), Positives = 124/296 (41%), Gaps = 29/296 (9%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIA-------ETNKLPYYTLLDTNTGHVIAENYP 47
MR+ + ++ M IF ++A LD + V+ E
Sbjct: 1 MRKSIKNNIVITMLLSIMFFQIFSKTALADSKLKDNFRVNARCAIALDRESKEVLFEQNA 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
AS TK++TA + L + ISKNA+ S +K G + L
Sbjct: 61 YEIVPMASTTKILTAIIAIEQ-----GDLDKKVVISKNAASIRGSKVGYKAGEEVGLKEL 115
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
L+ KS ND A+AIAE+L + + F Q MN+ + +G+ +HF + HG+ + HY++A
Sbjct: 116 AFGLMFKSGNDAAIAIAETLGGSVEGFAQIMNHYATGIGIIDSHFESPHGLDSNSHYSSA 175
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCAS 224
D+A+L+ + + + K Y N N + A+G+KTG+T +
Sbjct: 176 YDLALLTAKGMEFDLFREIVGSKQISKEKYNFTRDYNNINKILWLIPEANGVKTGYTGGA 235
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM-----GFYNKTDRKKINY 275
G +V+S + +I V+L D R + + + F N ++ +
Sbjct: 236 GKCLVSSVNHQGKDIIIVVLNCPD---RWAQTQKIYNHILETVAFENHNIKELVYK 288
>gi|227890476|ref|ZP_04008281.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii ATCC
33200]
gi|227849045|gb|EEJ59131.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii ATCC
33200]
Length = 308
Score = 128 bits (322), Expect = 8e-28, Method: Composition-based stats.
Identities = 59/299 (19%), Positives = 120/299 (40%), Gaps = 35/299 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE--------------TNKLPYYTLLDTNTGHVIAENYP 47
+++L +I++ + + F + ++ G I
Sbjct: 10 KKYLWLISLVIAAICFFVWKNNFNSNRMPSNYHVDQVDLNVKAAVAINAKDGSTIYAKNA 69
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
+ AS+TKL+T Y+ +KEKK T +T ++ ++ + G T
Sbjct: 70 NQSLPIASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDLGSNPDYASVPLRLGQKYT 129
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-- 161
+ ++KSAN+ A +A ++ +E F+ M ++ L+ F+ G+ +
Sbjct: 130 VRELYYAALIKSANNAARLLAIAVSGSETNFLNQMRQQARKWKLNNAKFVTVDGLPEKKK 189
Query: 162 ---------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ +A DMAI++ ++ ++P+ ++ ++ + N+N +
Sbjct: 190 NFLGMTTTVENKMSANDMAIVARKLIINYPEILNTTKLARAYFQNTLMINSNKMLNGLSY 249
Query: 213 ------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
DG+KTG T +G + + + +I VILGA + N R + LLS F
Sbjct: 250 YDSIFPVDGLKTGTTDGAGSCFTCTLNKNGKRVITVILGAENDNERFVETKKLLSYCFN 308
>gi|309782592|ref|ZP_07677315.1| D-alanyl-D-alanine carboxypeptidase family protein [Ralstonia sp.
5_7_47FAA]
gi|308918683|gb|EFP64357.1| D-alanyl-D-alanine carboxypeptidase family protein [Ralstonia sp.
5_7_47FAA]
Length = 396
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 10/253 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + ++D N G V+ + AS+TKLMTA VV + +L
Sbjct: 116 ATPDALALRSSVALVMDQNNGEVLFQKNSSAVLPIASITKLMTALVVTDAHQPMDELLEI 175
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
++ + S + G+ +T ++ L L ++ S N A A+ + FV M
Sbjct: 176 TD---EDRDYERNTGSRLRFGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAAM 232
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N ++ LG++ TH+++++G+ + ++A+D+A + P + +
Sbjct: 233 NRKARELGMNDTHYVDSNGL-SSSNVSSAQDLAKI-VMAAYKVPLIRQFTTTPEHTVSAN 290
Query: 196 -KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ Y NTN V G KTGF +G +V A ++++ V L + TR
Sbjct: 291 GRTLHYVNTNRLVRGGEWDIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTRF 350
Query: 254 KVSASLLSMGFYN 266
+ + + N
Sbjct: 351 ADATRVRNWLERN 363
>gi|241663205|ref|YP_002981565.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia
pickettii 12D]
gi|240865232|gb|ACS62893.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia
pickettii 12D]
Length = 379
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 105/253 (41%), Gaps = 10/253 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + ++D N G V+ + AS+TKLMTA VV + +L
Sbjct: 99 ATPDALALRSSVALVMDQNNGEVLFQKNSSAVLPIASITKLMTALVVTDAHQPMDELLEI 158
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
++ + S + G+ +T ++ L L ++ S N A A+ + FV M
Sbjct: 159 TD---EDRDYERNTGSRLRFGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAAM 215
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N ++ LG++ TH+++++G+ + ++A+D+A + P + +
Sbjct: 216 NRKARELGMNDTHYVDSNGL-SSSNVSSAQDLAKI-VMAAYKVPLIRQFTTTPEHTVSAN 273
Query: 196 -KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ Y NTN V G KTGF +G +V A ++++ V L + TR
Sbjct: 274 GRTLHYVNTNRLVRGGEWDIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTRF 333
Query: 254 KVSASLLSMGFYN 266
+ + + N
Sbjct: 334 ADATRVRNWLERN 346
>gi|29829956|ref|NP_824590.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
MA-4680]
gi|29607066|dbj|BAC71125.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
avermitilis MA-4680]
Length = 447
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 50/335 (14%), Positives = 104/335 (31%), Gaps = 34/335 (10%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
I + + + D +G V+A + PAS K++ A + +
Sbjct: 92 APVIPKDITARSWIVADAESGDVLAAHNAHWRLPPASTLKMLFADTLLPKFPK---NTEH 148
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ S A S+ K + + L L + + + AV + ++ K + V+ M
Sbjct: 149 KVVPSDLAGMGAGSSVVGIKENETYTVHDLWLGVFLRSGNDAVHVLSAMNKGVGQTVEDM 208
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK------- 191
++ L TH ++ G ++A D+ + + + ++
Sbjct: 209 QEHARELQALDTHVVSPDGYDAPRQVSSAYDLTLFARSGLQKKDFREYCATVRAQFPGET 268
Query: 192 -----GLEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ NTN + + G G+K G T +G A + + L+
Sbjct: 269 TKKKGKTTRGSFEIQNTNRLLAGDSDITPYQGIAGVKNGNTSNAGATFTGVAERNGKVLL 328
Query: 241 AVILGALD--RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++ N K +A LL GF + ++ Q ++ P + V
Sbjct: 329 VTVMNPEKNEHNEVYKETAKLLDWGFGAADKVTPVGELVAP--QGADTSAQPGANAPVSP 386
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ + D + I
Sbjct: 387 GAGAD---------KESAKPVAADLKDGGSSGVGI 412
>gi|329666891|gb|AEB92839.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus johnsonii DPC
6026]
Length = 308
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 60/299 (20%), Positives = 119/299 (39%), Gaps = 35/299 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
+++L +I++ + + F + + ++ G I
Sbjct: 10 KKYLWLISLVIAAICFFVWKNNFNSNRMPSNYHADQVDLNVKAAVAINAKDGSTIYAKNA 69
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ AS+TKL+T Y+ +KEKK T +T ++ + + +
Sbjct: 70 NQSLPIASMTKLLTVYLTLQAIKEKKISWDTTVTPTQEIVDLGSNPDYASVPLRLGQKYT 129
Query: 108 LKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-- 161
++ L KSAN+ A +A ++ +E F+ M ++ L+ F+ G+ +
Sbjct: 130 VRELYDAALIKSANNAARLLAIAVSGSETNFLNQMRQQARKWKLNNAKFVTVDGLPEKKK 189
Query: 162 ---------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ +A DMAI++ ++ TD+P+ ++ + + N+N +
Sbjct: 190 NFLGMTTTVENKMSANDMAIVARKLTTDYPEILNTTKQARAYFQNTLMTNSNKMLSGLSY 249
Query: 213 ------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
DG+KTG T +G + + + +I VILGA + N R + LLS F
Sbjct: 250 YDSTFPVDGLKTGTTDGAGSCFTCTVNKNGKRVITVILGAENDNERFVETKKLLSYCFN 308
>gi|228990377|ref|ZP_04150342.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
12442]
gi|228768903|gb|EEM17501.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
12442]
Length = 411
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 74/325 (22%), Positives = 131/325 (40%), Gaps = 17/325 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P + +D TG V+ + PAS+TK++TA ++ K
Sbjct: 21 PVPAPGPGPNVFGQFAVSIDAKTGDVLYDKNAHQHAFPASMTKVLTAILLMEHTK----- 75
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND+A AI E + + +
Sbjct: 76 PEEQFTFSQPALDQEKSNYQLEFQVGETINRNTALTILMVLSANDVAYAIGERIGGSIEN 135
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG +HF+ +G+ HYTTA DMA+++ +P+ + K
Sbjct: 136 FANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTAYDMAMITR-GVQQYPEILQAMNTKRT 194
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + ++ V++ A R
Sbjct: 195 TVTTSRQTVSIFNKATYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIVNVVM-ASQRP 253
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E N
Sbjct: 254 EIYEDMRQIADHSFSQFAKQMVLDKNNWHQKATYLDKNIDCELEKSAELMLKKDEGKNVK 313
Query: 308 TQMK-EAKDKES-HFIDFEKITLLK 330
T + DKE + + ++
Sbjct: 314 TVFRTAPVDKEKLYQKGIHRGDVIG 338
>gi|228996477|ref|ZP_04156116.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
gi|229004129|ref|ZP_04161930.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
gi|228756990|gb|EEM06234.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
gi|228763109|gb|EEM12017.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
Length = 411
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 74/325 (22%), Positives = 131/325 (40%), Gaps = 17/325 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
P + +D TG V+ + PAS+TK++TA ++ K
Sbjct: 21 PVPAPGPGPNVFGQFAVSIDAKTGDVLYDKNAHQHAFPASMTKVLTAILLMEHTK----- 75
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND+A AI E + + +
Sbjct: 76 PEEQFTFSQPALDQEKSNYQLEFQVGETINRNTALTILMVLSANDVAYAIGERIGGSIEN 135
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG +HF+ +G+ HYTTA DMA+++ +P+ + K
Sbjct: 136 FANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTAYDMAMITR-GVQQYPEILQAMNTKRT 194
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + ++ V++ A R
Sbjct: 195 TVTTSRQTVSIFNKATYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIVNVVM-ASQRP 253
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E N
Sbjct: 254 EIYEDMRQIADHSFSQFAKQMVLDKNNWHQKATYLDKNIDCELEKSAELMLKKDEGKNVK 313
Query: 308 TQMK-EAKDKES-HFIDFEKITLLK 330
T + DKE + + ++
Sbjct: 314 TVFRTAPVDKEKLYQKGIHRGDVIG 338
>gi|311896449|dbj|BAJ28857.1| putative peptidase S11 family protein [Kitasatospora setae KM-6054]
Length = 371
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 51/286 (17%), Positives = 98/286 (34%), Gaps = 15/286 (5%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ + + + D +G V+A PAS K++ A V T
Sbjct: 31 PALPKELTGRSWVVADAGSGQVLAAFNAHAELPPASTLKMLFAVTVLPRFPASDVHRVTW 90
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
S+ S+ K L + S+ + AV + ++ K V M
Sbjct: 91 ---SELQGMGAGSSLVGIKEDLDYKVEDLWRGVFLSSGNDAVHVLANMNGGVAKTVADMQ 147
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
+ L TH ++ G G T+A D+ + + D P++ Y + +
Sbjct: 148 ARADRLRARDTHVVSPDGYDMDGQVTSAYDLTLFARAGLRD-PEFRGYCATRWAQFPGAV 206
Query: 196 -------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
NT+ +G + G G+K G+T +G +A + ++L+ ++ D
Sbjct: 207 DKKTGQRGSFGIANTDRLLGKYPGLIGVKNGYTTNAGATYTGAAERDGRTLLVTVMHPAD 266
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
+A+LL GF + + +D Q +
Sbjct: 267 GAKVYDEAAALLDWGFAAAGKAAPVGELAEDGGAQAPAEGPAAARP 312
>gi|229166209|ref|ZP_04293969.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
gi|228617307|gb|EEK74372.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
Length = 407
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 73/326 (22%), Positives = 130/326 (39%), Gaps = 15/326 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG ++ + +H PAS+TK++TA ++ K
Sbjct: 16 VAPPPAEGPNVFSQFATTIDAKTGDMLYDKNANHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAEHIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 131 FANMMNERAKQLGAKDSHFVTPNGLHDPNHYTTPYDMAMITRGVQKYPEILQAMNTKRTT 190
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ G KTGFT + +V + +I V++ A R
Sbjct: 191 VTTSTQTVSIFNKSTYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRPE 249
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F T + ++ K Y + S E+ + E N T
Sbjct: 250 IYEDLKQMTEYSFGQFTKQTVLDKHSWHQKTTYLNKDVDSELENSAELMLKKDEGKNVKT 309
Query: 309 QMKEAKDKESHFIDFEKITLLKNKIT 334
+ + ++K +
Sbjct: 310 AFRV--NSVDKEALYQKGIHRGEVVG 333
>gi|307326560|ref|ZP_07605754.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
violaceusniger Tu 4113]
gi|306887754|gb|EFN18746.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
violaceusniger Tu 4113]
Length = 313
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 72/284 (25%), Positives = 117/284 (41%), Gaps = 27/284 (9%)
Query: 6 VIIAMAMLSNIFPFLSI--------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
VI + A L+ P + LLD NT + D AS T
Sbjct: 16 VIASAAALTVAVPANAAQATEARSGPTEVSAKGAYLLDNNTNKELWAKAADTKRPMASTT 75
Query: 58 KLMTAYVVFSFLKEKKA-MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
KLMTA VV + +T + + S + +KG +T+ L L++ S
Sbjct: 76 KLMTAVVVLDTRGLELGKKVTVKQSYIDYTARVGGSKADLQKGDKLTVKQLLYGLLLPSG 135
Query: 117 NDIAVAIAESL------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARD 169
D A+A+A++ K K F+ MN + LG++ +H+ G+ + G +YTT RD
Sbjct: 136 CDAAMALADTFGTGDTTAKRTKSFIAQMNKKASALGMTKSHYDTFDGISEGGQNYTTPRD 195
Query: 170 MAILSWRIKTDFP--------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
MA L+ + + + + NTN +G++ GA G+KTG
Sbjct: 196 MAKLARHALGNSTLGTVVKSVDTIQKAPAANGRTRTYYWNNTNRLLGSYSGAIGIKTGTG 255
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A G +V +A + ++++ VIL A R + +L F
Sbjct: 256 TAPGRCLVFAAKRDGRTVVGVILNAP---KRYPDAKKMLDWAFR 296
>gi|228920088|ref|ZP_04083437.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228839544|gb|EEM84836.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 407
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 75/306 (24%), Positives = 126/306 (41%), Gaps = 13/306 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG V+ + H PAS TK++TA ++ K
Sbjct: 16 VAPPPAEGPNVFSQFATTIDAKTGDVLYDKNAYHRAFPASTTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 131 FANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYDMAMITKGVQKYPEILQAMNTKRTT 190
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + G KTGFT + +V + +I+V++ A R
Sbjct: 191 VTTSRQTVSIFNKSNFFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVM-ASQRPE 249
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F T + ++ K Y N S E+ + E N T
Sbjct: 250 IYEDLKQMAEYSFGQFTKQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKT 309
Query: 309 QMKEAK 314
+ A
Sbjct: 310 IFRAAS 315
>gi|47093271|ref|ZP_00231042.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
monocytogenes str. 4b H7858]
gi|226225362|ref|YP_002759469.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes
Clip81459]
gi|254930914|ref|ZP_05264273.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|47018345|gb|EAL09107.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
monocytogenes str. 4b H7858]
gi|225877824|emb|CAS06539.1| Putative D-alanyl-D-alanine carboxypeptidase [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|293582460|gb|EFF94492.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|328468283|gb|EGF39289.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 1816]
gi|328469045|gb|EGF39999.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes 220]
Length = 272
Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASLTKLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGANFPKEMNNQAKKL 146
Query: 146 GLSA-THFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201
G+S+ T F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN ++G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|270262024|ref|ZP_06190296.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
odorifera 4Rx13]
gi|270043900|gb|EFA16992.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
odorifera 4Rx13]
Length = 277
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 51/267 (19%), Positives = 112/267 (41%), Gaps = 9/267 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+R+F +IA+++L I P + A +++ TG + + D ASLTKL
Sbjct: 12 LRRFRAVIALSLLFVIAPAQAAAPLVLHSKAVLVVNQRTGKTLFQKQADRVLPIASLTKL 71
Query: 60 MTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
MTA V + L + ++ + ++S GS+++ + L + ++ S N
Sbjct: 72 MTAMVALDSRRP----LGNKMRVTAADRDLLKKTHSRLTLGSSLSRRDMLHIALMSSENR 127
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A A++ + K FV MN ++++G+ F ++ G+ + + +++ +
Sbjct: 128 AAAALSRNYPGGRKAFVAKMNRKARSIGMKHARFYDSTGLTPRNVASANDLLKMVNHAYR 187
Query: 179 TDFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQG 235
+ + + + Y ++N + KTG+T +G +V +
Sbjct: 188 YQTIRRFSTDRQHVVYPGRGQLVYRSSNGLINNRNWNIQLQKTGYTNEAGHCLVMRTLIK 247
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSM 262
Q ++ ++LG+ R + L +
Sbjct: 248 GQPVVIILLGSQQRYGHYDDALRLKTW 274
>gi|269102001|ref|ZP_06154698.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161899|gb|EEZ40395.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 285
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 63/244 (25%), Positives = 108/244 (44%), Gaps = 6/244 (2%)
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ G T+ + + + +IV S ND VA+AE + +++ FV MN +KN+G+ +TH+
Sbjct: 1 MFLEVGKTVKVSDLNRGIIVDSGNDACVAMAEHVAGSQESFVDLMNAWAKNVGMKSTHYA 60
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLG 212
N HG+ YTT D+++L+ I D P + K G N N L
Sbjct: 61 NVHGLDNPDLYTTPYDLSLLARAIIRDTPNEFKIYSEKSFTYNGITQYNRNGLLWDKSLN 120
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
DGMKTG T +G+++V++A +G LI+V++G N R S LL+ GF
Sbjct: 121 VDGMKTGHTNNAGYSLVSTATEGKMRLISVVMGTKSPNARKAESKKLLNYGFRFFDTVSP 180
Query: 273 INY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + + + ++++ T + + +KE +K
Sbjct: 181 NKANAPLVSEKVWMGDTDTVELGVTKDTYVTLPRTQTKDLKASFVINKE-LRAPIKKGEQ 239
Query: 329 LKNK 332
L
Sbjct: 240 LGTL 243
>gi|239929347|ref|ZP_04686300.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
gi|291437677|ref|ZP_06577067.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
gi|291340572|gb|EFE67528.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
Length = 429
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 49/283 (17%), Positives = 99/283 (34%), Gaps = 26/283 (9%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + + + D +G V+A + PAS K++ A + +
Sbjct: 68 APVLPKDLSARSWIVADAESGEVLAAHNAHWRLAPASTLKMLFADTLLPKWPK---STEH 124
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S A P S+ K + L L + + + AV + ++ +K V+ M
Sbjct: 125 RVEVSDMAGVGPGSSMVGIKEEETYTVHDLWLGVFLRSGNDAVHVLSAMNGGVEKTVEEM 184
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N ++ L TH ++ G G ++A D+ +++ + Y ++
Sbjct: 185 NEHAEELQALDTHVVSPDGYDAEGQVSSAYDLTLIARSGLQK-KDFREYCSTVSVKFPGE 243
Query: 196 -----------KGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ NTN V + G G+K G T +G A + +
Sbjct: 244 TKKNKKGKEVRGSFEIQNTNRLLVGAYDVPVYEGIAGVKNGNTTNAGATFTGVAERDGKV 303
Query: 239 LIAVILGALDR--NTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
L+ ++ N K +A LL GF + + ++
Sbjct: 304 LLVTVMNPEKDKGNAVYKETAKLLDWGFAAAGKVEPVGELVPP 346
>gi|322372917|ref|ZP_08047453.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
gi|321277959|gb|EFX55028.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
Length = 448
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 76/386 (19%), Positives = 141/386 (36%), Gaps = 52/386 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------------KLPYYTLLDTNTGHVIAE 44
M++ +V I + + P LS A+ + L+D NTG V+ E
Sbjct: 1 MKKKIVAILLTACLALAPGLSSADELMDITHAAGYTEATEAYRPKSTLLIDGNTGDVLWE 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
D +PAS++K MT Y+VF + + + T IT + +N
Sbjct: 61 ENADEVRDPASMSKAMTLYLVFEAMSKGEISEDTVITATPTDQAIAEIYEISNNKIVAGV 120
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG-- 157
+ + S + K++ MN SK LG++ T + NA G
Sbjct: 121 QYTVSELITMTAVPSSNVTTVMLANYLTNNDPDKWIDKMNEKSKELGMTHTKWYNASGAV 180
Query: 158 -------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ + TTARD+AI+++ +P+ ++Y + +K
Sbjct: 181 AVAFKGYYNPQRYDINQTNQTTARDLAIMTYNFIKKYPKILNYTDKPVVTVKKGTPYEET 240
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LDR 249
+ + G DG+KTG + FN + + +GDQ +IAVI+G+
Sbjct: 241 FETYNYSIPGAKYGIKGVDGLKTGSSPEGAFNYINTIKRGDQRMIAVIMGSGDWSDQTGE 300
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
R+ +L+ + + + +K ++ + + ++ V Q+ I+
Sbjct: 301 EIRHTFGNALVEKMYKDFSYKKVLSKGEQKI-DGKKYDVAKDVYATVKKGQEPKISVKDD 359
Query: 310 MKEAKDKESHFIDFEKITLLKNKITK 335
+ K T +K K
Sbjct: 360 QIVVDNGLKTVSPKIKATSVKATKVK 385
>gi|229177783|ref|ZP_04305157.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
gi|229189457|ref|ZP_04316474.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
gi|228594048|gb|EEK51850.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
gi|228605747|gb|EEK63194.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
Length = 405
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 75/306 (24%), Positives = 126/306 (41%), Gaps = 13/306 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG V+ + H PAS TK++TA ++ K
Sbjct: 14 VAPPPAEGPNVFSQFATTIDAKTGDVLYDKNAYHRAFPASTTKVLTAILLMEHTK----- 68
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 69 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 128
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 129 FANMMNEKAKQLGAKDSHFVTPNGLHDPNHYTTPYDMAMITKGVQKYPEILQAMNTKRTT 188
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + G KTGFT + +V + +I+V++ A R
Sbjct: 189 VTTSRQTVSIFNKSNFFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIISVVM-ASQRPE 247
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F T + ++ K Y N S E+ + E N T
Sbjct: 248 IYEDLKQMAEYSFGQFTKQMVLDKHNWHQKTTYLNKDVNSELEQSAELMLKKDEGKNVKT 307
Query: 309 QMKEAK 314
+ A
Sbjct: 308 IFRAAS 313
>gi|300763430|ref|ZP_07073428.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
N1-017]
gi|300515707|gb|EFK42756.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
N1-017]
Length = 272
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASL+KLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVKNGKPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDETLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MN + L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGADFPKKMNRQATKL 146
Query: 146 GLSA-THFMNAHGVVQHGHY--TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201
G+S+ T+F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSRTNFVSASGLDVDGKTAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN +G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|238749857|ref|ZP_04611361.1| D-alanyl-D-alanine endopeptidase [Yersinia rohdei ATCC 43380]
gi|238711786|gb|EEQ04000.1| D-alanyl-D-alanine endopeptidase [Yersinia rohdei ATCC 43380]
Length = 311
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 61/248 (24%), Positives = 97/248 (39%), Gaps = 12/248 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
++D T VI N D AS+TKLMTA VV K L I+
Sbjct: 38 APLELASGSAMVIDLQTNKVIYANNADEVVPIASITKLMTAMVVLDA----KLPLDEIIS 93
Query: 82 IS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ E S + S ++ + L L ++ S N A ++A F++ MN
Sbjct: 94 VDIHQTKEMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNA 153
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKK 199
+K+LG++ T ++ G+ + +TARD+ L K + K +
Sbjct: 154 KAKSLGMTKTRYVEPTGL-SIENVSTARDLTKLLVATKQYPLIGQLSTTTEKMATFREPN 212
Query: 200 Y----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
Y NTN V KTGFT +G + + G++ + V+L A + T
Sbjct: 213 YTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYTHFA 272
Query: 255 VSASLLSM 262
+ L S
Sbjct: 273 DANRLRSW 280
>gi|254824823|ref|ZP_05229824.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|293594063|gb|EFG01824.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
Length = 272
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASLTKLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGANFPKEMNNQAKKL 146
Query: 146 GLSA-THFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201
G+S+ T F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN ++G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|229160328|ref|ZP_04288326.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
gi|228623052|gb|EEK79880.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
Length = 407
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 70/306 (22%), Positives = 124/306 (40%), Gaps = 13/306 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPAEGPNVFSQFAATVDAKTGDMLYDKNARHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETIDRNTALMILMVLSANDVSFAIAEHIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ ++ +
Sbjct: 131 FANMMNEKAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITRGVQKYPEILQAMNTKRIS 190
Query: 194 -EIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ N + + G KTGFT + +V + +I V++ A R
Sbjct: 191 VTTSRQTVSIFNKSTYFENPYSMGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRPE 249
Query: 252 RNKVSASLLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F + ++ K Y + S E+ + E N T
Sbjct: 250 IYEDLKQMAEYSFGQFVKQTVLDKQSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVRT 309
Query: 309 QMKEAK 314
+ A
Sbjct: 310 IFRAAS 315
>gi|228908280|ref|ZP_04072125.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
200]
gi|228851321|gb|EEM96130.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
200]
Length = 338
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 16/281 (5%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKDEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF----MNAHGVVQHGHYTTARDMAI 172
N A+A+AE + E F MN +K L L + TTA D A
Sbjct: 124 NRSALALAEHIAGNEDNFTMLMNKKAKELKLLQPSPFLNSTGINHDTNKQSTTTAIDAAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ R+ DFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++ V++A GD LI+VIL A + N + LL GF
Sbjct: 244 NYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFD 284
>gi|228926407|ref|ZP_04089479.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229120916|ref|ZP_04250158.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
gi|228662576|gb|EEL18174.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
gi|228833231|gb|EEM78796.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 407
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 74/327 (22%), Positives = 133/327 (40%), Gaps = 17/327 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + T +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPKEGPNVFSQFATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 131 FANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITR-GVQKYPEILQAMNTKRT 189
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 190 TVTTSRQTVSIFNKSTYFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 248
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E N
Sbjct: 249 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVK 308
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKIT 334
T + A + + K +
Sbjct: 309 TTFRAASLDKDSL--YHKGIHRGEVVG 333
>gi|238854687|ref|ZP_04645017.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
jensenii 269-3]
gi|282932922|ref|ZP_06338319.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
jensenii 208-1]
gi|238832477|gb|EEQ24784.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
jensenii 269-3]
gi|281302957|gb|EFA95162.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
jensenii 208-1]
Length = 395
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 60/381 (15%), Positives = 129/381 (33%), Gaps = 46/381 (12%)
Query: 1 MRQF-----------LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++F L II + LS + ++ ++D TG ++ +
Sbjct: 1 MKRFWDKLGLAGIVVLWIIGIINLSFFNIVKADVQSVNAKAAFMMDEKTGQILYQRNATK 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ ASLTK++T V+ + + K I ISK+ ++ ++
Sbjct: 61 KYAVASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWHFSNVPLVYNERYTVR 120
Query: 110 LLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------- 158
LI A E + + F M +K G+ N G+
Sbjct: 121 SLIESMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGD 180
Query: 159 -------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ +A+DMA++S + +P+ ++ + K K ++ ++
Sbjct: 181 LKLPKIDDNQENQFSAKDMALVSKYLIDKYPEVLNITKTKYANFKIRQDNEMKMENIIYM 240
Query: 212 -----------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-RNKVSASL 259
DG+KTG T A+G+ V + ++ +I V+L + + + ++
Sbjct: 241 LEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVPGEYSNQFIQTNNM 300
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK-----EAK 314
+ F K + YQ+ + +K+ + + + K
Sbjct: 301 IDTVFDKYQLVKVDKNNLPKKYQKITITSKKQKKKISVVPEKDSALWLQKKQNLSSLTPK 360
Query: 315 DKESHFIDFEKITLLKNKITK 335
+K +++ + K
Sbjct: 361 LIVKEQNKVKKGSIVAKLVYK 381
>gi|187935697|ref|YP_001886551.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B str.
Eklund 17B]
gi|187723850|gb|ACD25071.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium
botulinum B str. Eklund 17B]
Length = 289
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 73/296 (24%), Positives = 125/296 (42%), Gaps = 29/296 (9%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIA-------ETNKLPYYTLLDTNTGHVIAENYP 47
MR+ + ++ ML IF ++A LD + V+ E
Sbjct: 1 MRKTIKNYIVITMLLSIMLFQIFSKAALADSKLKDNFRVNARCAIALDRESKEVLFEQNA 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
AS TK++TA + L + ISK A+ S +K G + L
Sbjct: 61 YEIVPMASTTKILTAIIAIEQ-----GDLDKKVVISKKAASIRGSKVGYKAGEEIRLKEL 115
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
L+ KS ND A+AIAE+L + + F Q MN+ + +G+ +HF + HG+ + HY++A
Sbjct: 116 AFGLMFKSGNDAAIAIAETLGGSVEGFAQIMNHYATGIGIIDSHFESPHGLDSNSHYSSA 175
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKG---KKYPNTNWAVGTFLGADGMKTGFTCAS 224
D+AIL+ + + + K + Y N N + A+G+KTG+T +
Sbjct: 176 YDLAILTAKGMEYDLFREIVGSKQISKEKYDFTRDYNNINKILWLIPEANGVKTGYTGGA 235
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM-----GFYNKTDRKKINY 275
G +V+S + +I V+L D R + + + F N ++ +
Sbjct: 236 GKCLVSSVNHKGKDIIIVVLNCPD---RWAQTQKIYNHILETVAFENHNIKELVYK 288
>gi|328945504|gb|EGG39655.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK1087]
Length = 451
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 80/384 (20%), Positives = 149/384 (38%), Gaps = 58/384 (15%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIA 43
M++ L+++ +A L+++ P + A+ + ++D +TG V+
Sbjct: 1 MKKKLLLLGIAFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKK 98
E+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 61 EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 120
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 121 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 180
Query: 159 VQH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 181 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 240
Query: 204 NWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 241 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 300
Query: 252 ---RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKE 302
R+ +L+ + + +K ++ ++ Q V +E +
Sbjct: 301 EYYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENN 360
Query: 303 IINYNTQMKEAKDKESHFIDFEKI 326
++ +K K S + EK+
Sbjct: 361 VLKAENGLKTLSSKISDEMKVEKV 384
>gi|254851885|ref|ZP_05241233.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|258605180|gb|EEW17788.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
Length = 272
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 110/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASL+KLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVKNGKPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDETLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MN + L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGADFPKKMNRQATKL 146
Query: 146 GLSA-THFMNAHGVVQHGHY--TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201
G+S+ T+F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSRTNFVSASGLDVDGKTAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDEGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN +G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|228913946|ref|ZP_04077571.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228944975|ref|ZP_04107336.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228814644|gb|EEM60904.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228845885|gb|EEM90911.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 407
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 73/327 (22%), Positives = 133/327 (40%), Gaps = 17/327 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + T +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPKEGPNVFSQFATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 131 FANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITR-GVQKYPEILQAMNTKRT 189
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + ++ V++ A R
Sbjct: 190 TVTTSRQTVSIFNKSTYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIVNVVM-ASQRP 248
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E N
Sbjct: 249 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVK 308
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKIT 334
T + A + + K +
Sbjct: 309 TTFRAASLDKDSL--YHKGIHRGEVVG 333
>gi|238757296|ref|ZP_04618483.1| D-alanyl-D-alanine endopeptidase [Yersinia aldovae ATCC 35236]
gi|238704674|gb|EEP97204.1| D-alanyl-D-alanine endopeptidase [Yersinia aldovae ATCC 35236]
Length = 311
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/261 (22%), Positives = 98/261 (37%), Gaps = 10/261 (3%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A A ++D T VI N D AS+TKLMTA VV
Sbjct: 24 LATASGGTAVAKGKAPLELASGSAMVVDLQTNKVIYANNIDEVVPIASITKLMTAMVVLD 83
Query: 68 FLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
K L I++ + ++ S + S ++ + L L ++ S N A ++A
Sbjct: 84 A----KLPLDEVISVDIHQTKELKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHH 139
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
F++ MN +K+LG++ T ++ G+ + T +L + +
Sbjct: 140 YPGGYNAFIKAMNAKAKSLGMTHTRYVEPTGLSINNVSTARDLTKMLMASKQYPLIGQLS 199
Query: 187 YFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIA 241
K + Y NTN V KTGFT +G + + G++ +
Sbjct: 200 TTTEKMATFREPNYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVAL 259
Query: 242 VILGALDRNTRNKVSASLLSM 262
V+L A + T + L S
Sbjct: 260 VVLDAFGKYTHFADANRLRSW 280
>gi|327478643|gb|AEA81953.1| D-alanyl-D-alanine endopeptidase [Pseudomonas stutzeri DSM 4166]
Length = 312
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 64/266 (24%), Positives = 106/266 (39%), Gaps = 12/266 (4%)
Query: 5 LVIIAMAMLSNIFPFLSIA--ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
L+ +A L I + + L+D NT V+ + PD AS+TKLMTA
Sbjct: 10 LLFACLASLPVIHAQAAKPMVQELASGSALLVDLNTNEVLYSSNPDMVVPIASVTKLMTA 69
Query: 63 YVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
VV L + ++ ++A E S + GS ++ L L ++ S N A
Sbjct: 70 MVVLDAK----LPLDQALPVTIRDAKEMQGVYSRVRIGSEISRREMLLLTLMSSENRAAA 125
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
++A F+Q MN ++ LG+S TH++ G+ + + + ++ +
Sbjct: 126 SLAHHYPGGYAAFIQAMNAKARALGMSRTHYVEPTGLSERNVSSANDLVKLIRASRQYPL 185
Query: 182 PQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGD 236
Q K + + Y NTN V KTGFT A+G +V S
Sbjct: 186 IQQFSTTDEKTVAFRKPNYTLGFRNTNALVRKNNWDIQLSKTGFTNAAGHCLVMSTTMKQ 245
Query: 237 QSLIAVILGALDRNTRNKVSASLLSM 262
+ + V+L A + T + L
Sbjct: 246 RPVAFVVLDAFGKYTHMADANRLKKW 271
>gi|300782776|ref|YP_003763067.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
U32]
gi|299792290|gb|ADJ42665.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
U32]
Length = 414
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 65/260 (25%), Positives = 103/260 (39%), Gaps = 14/260 (5%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L L+ + N + + D +TG V+A P PASL K + A VV
Sbjct: 81 LVTPSGALNPPDGNTAASWLVQDLDTGAVVAAKDPHARQRPASLIKTLLALVV-----VT 135
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ I +K +E + G T+D L L++ S ND+A A +L +
Sbjct: 136 QLDPQQTIVATKEDAEQECTCVGLVAGGQYTVDQLLHGLLMHSGNDVAHVFATALGGPDS 195
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+ MN + +G T G+ G T+A D++++ P++ K
Sbjct: 196 AVAK-MNALAAKIGALDTRAATPSGLDGPGMSTSAYDLSLIFNY-AMKQPEFAKVVATKN 253
Query: 193 LEIKG------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
E N N +G + G G KTGFT + V +A + + L V+L A
Sbjct: 254 FEFPPAGGKPAIPIFNDNKLLGVYPGFLGGKTGFTDDARHTYVGAAQRKGKRLAVVMLRA 313
Query: 247 LDRNTRNKV-SASLLSMGFY 265
+ T+ +A LL GF
Sbjct: 314 EQKPTKVVDQAAKLLDYGFA 333
>gi|145490887|ref|XP_001431443.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398548|emb|CAK64045.1| unnamed protein product [Paramecium tetraurelia]
Length = 302
Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats.
Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 19/263 (7%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA-MLTTPIT 81
A + ++D+ +G V+ + AS+TK+MT YVV + + T
Sbjct: 38 APRITAKSWIIVDSQSGDVLYSFNENQKREIASITKIMTFYVVLNMCRTMNVQTNNTYAE 97
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--------- 132
+S AS + + KG +++++ L++ S ND A+A+AE+
Sbjct: 98 VSFQASSVGGTTADLLKGDVVSIEDLFYGLMLPSGNDAAMALAENFGIYAMYQNKIKGKN 157
Query: 133 ---KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM---- 185
F+Q MNN ++ L +S T + N HG+ + ++A D+A L ++ D
Sbjct: 158 PLIYFIQEMNNKARELRMSQTTYANPHGLNNKNNVSSAYDVAKLCNQLLKDEFFRKVVNT 217
Query: 186 --HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
H+ I+ E + N + G G+KTG T +G + + ++S VI
Sbjct: 218 KVHFSTIQDEEGFTRDVIWENTNKLLYQGFKGIKTGNTSVAGPCLASYYQTANRSFTIVI 277
Query: 244 LGALDRNTRNKVSASLLSMGFYN 266
LG ++ R + LL
Sbjct: 278 LGCRNQEDRWSETMQLLQWCLSQ 300
>gi|254518751|ref|ZP_05130807.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
7_2_43FAA]
gi|226912500|gb|EEH97701.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
7_2_43FAA]
Length = 389
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 75/316 (23%), Positives = 130/316 (41%), Gaps = 18/316 (5%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+D + V+ AS TK++T+ + ++ L +TI
Sbjct: 60 PLKVSARNAIAIDAESRQVLWNQKGYEIVPMASTTKILTSLIAINY-----GDLDRIVTI 114
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
SKNAS S +K G +T+ L L+ +S ND A+AIAE + + + F MN+ +
Sbjct: 115 SKNASSIRGSTVGYKAGEKITMRELLFGLMFRSGNDAAIAIAEDIGGSVENFSNIMNDFA 174
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM---HYFQIKGLEIKGKK 199
++LG+ +HF + HG+ HY++A D+AIL+ + K +
Sbjct: 175 RSLGIIDSHFESPHGLDSAKHYSSAYDLAILTAKGMEYDVFREIVGEKVIYKDKYNFTRD 234
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
Y N N + GA+G+KTG+T +G +V+S +++I V+L +D R V+ +
Sbjct: 235 YQNINKILYRIPGANGVKTGYTGGAGKCLVSSVNHNGRNIIIVVLNCVD---RWNVTEKI 291
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ T + N I + E++ KE ++
Sbjct: 292 FNYVISTNTFAEISNKDILQRENLAGLGNIIQ-EEDITYGYKEKDIVEVEVFNRSS---- 346
Query: 320 FIDFEKITLLKNKITK 335
D E +L K
Sbjct: 347 --DVETGDILGKISVK 360
>gi|171059568|ref|YP_001791917.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Leptothrix
cholodnii SP-6]
gi|170777013|gb|ACB35152.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Leptothrix
cholodnii SP-6]
Length = 323
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 93/244 (38%), Gaps = 8/244 (3%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
A K ++D T V+ P ASLTKLMTA VV + L + +
Sbjct: 61 ALDLKSSVAFVIDQETSEVLFSKNPQAVLPIASLTKLMTALVVVEAGQP----LDEILEV 116
Query: 83 SKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
S+ + + + + +T ++ L L ++ S N A A+ FV MN
Sbjct: 117 SEADVDTEKFSRSRLAVGTRLTREDMLHLALMSSENRAAHALGRHFPGGLNAFVDAMNFK 176
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KK 199
+ +LG++ TH++ G+ + ++ + +E+ +
Sbjct: 177 AASLGMADTHYVEPTGLSSRNQASAPDLARLVKAAYAYPLLRDFSTTPEAEVEVGRRTMQ 236
Query: 200 YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ NTN + G KTG+ +G +V A + LI V L + + +R +
Sbjct: 237 FRNTNGLIRNPTWDIGLQKTGYIVEAGRCLVMQAKFAGRQLIMVFLDSTGKYSRLGDAER 296
Query: 259 LLSM 262
+
Sbjct: 297 VRRW 300
>gi|125717597|ref|YP_001034730.1| DD-carboxypeptidase [Streptococcus sanguinis SK36]
gi|125497514|gb|ABN44180.1| DD-carboxypeptidase, putative [Streptococcus sanguinis SK36]
Length = 451
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 79/384 (20%), Positives = 148/384 (38%), Gaps = 58/384 (15%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIA 43
M++ L+++ + L+++ P + A+ + ++D +TG V+
Sbjct: 1 MKKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKK 98
E+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 61 EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 120
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 121 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 180
Query: 159 VQH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 181 AAISFKGYYNPQNYDNTLSNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEE 240
Query: 204 NWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 241 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDG 300
Query: 252 ---RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKE 302
R+ +L+ + + +K ++ ++ Q V +E +
Sbjct: 301 EYYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENN 360
Query: 303 IINYNTQMKEAKDKESHFIDFEKI 326
++ +K K S + EK+
Sbjct: 361 VLKAENGLKTLSSKISDEMKVEKV 384
>gi|238763822|ref|ZP_04624780.1| D-alanyl-D-alanine endopeptidase [Yersinia kristensenii ATCC 33638]
gi|238697952|gb|EEP90711.1| D-alanyl-D-alanine endopeptidase [Yersinia kristensenii ATCC 33638]
Length = 311
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/247 (23%), Positives = 93/247 (37%), Gaps = 10/247 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
++D T VI N D AS+TKLMTA VV K L I+
Sbjct: 38 APLELASGSAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLDA----KLPLDEIIS 93
Query: 82 IS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ E S + S ++ + L L ++ S N A ++A F++ MN
Sbjct: 94 VDIHQTKEMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNA 153
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+K+LG++ T ++ G+ + T +L + + K + Y
Sbjct: 154 KAKSLGMTNTRYVEPTGLSINNVSTARDLTKLLIATKQYPLIGQLSTTTEKMATFRDPNY 213
Query: 201 ----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
NTN V KTGFT +G + + G++ + V+L A + T
Sbjct: 214 TLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYTHFAD 273
Query: 256 SASLLSM 262
+ L S
Sbjct: 274 ANRLRSW 280
>gi|304395773|ref|ZP_07377656.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp.
aB]
gi|304357067|gb|EFM21431.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pantoea sp.
aB]
Length = 347
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 56/279 (20%), Positives = 106/279 (37%), Gaps = 20/279 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
+R L+ +A+ + I + A ++D T V+ ++PD
Sbjct: 37 IRFTLLSLALLVSGQIVSLPAQATTTLSQLAPIAQPQIASGSAMIVDLTTNKVLFSSHPD 96
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV + M+ I+ + S K S ++ N +
Sbjct: 97 RVRPIASITKLMTAMVVLDAHQPMNEMIPVDISQTPE---MRGVFSRVKLNSQISRRNMM 153
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A + F++ MN +++LG+ T ++ G+ +
Sbjct: 154 LLALMSSENRAAASLAHAYPGGYNAFIRAMNAKARSLGMKQTRYVEPTGLSTQNVSSAQD 213
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCA 223
+ +L + + + + Y NTN V KTG+T
Sbjct: 214 LVKLLKATREYPELGALSTTKEETAVFAHPSYALPFRNTNHLVYKNDWHIQLTKTGYTDE 273
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + ++ + V+L A + T + L S
Sbjct: 274 AGHCLVMRTMINNRPVALVVLDAFGKYTHFADANRLRSW 312
>gi|86739377|ref|YP_479777.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. CcI3]
gi|86566239|gb|ABD10048.1| Serine-type D-Ala-D-Ala carboxypeptidase [Frankia sp. CcI3]
Length = 551
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 55/284 (19%), Positives = 107/284 (37%), Gaps = 12/284 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ + + D +G ++A P PAS K++TA V
Sbjct: 93 SDSAPPAGLTAAEWLVADAGSGAILAAYRPHAQDLPASTMKILTALTVLP-----GLPPD 147
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+T+ +NA + G T+ + +++ S ND +A+ ++ T +Q
Sbjct: 148 RVVTVDENAPRVDGTKVGLVPGVGYTVRDLATAMLISSGNDATMALVQASGGT-PAVLQR 206
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK- 196
MN +++LG + T + G+ G T+ D+A+L + + +
Sbjct: 207 MNALARSLGATDTVAGDPTGLDSPGQVTSVHDLAVLGRAALDNPTVRGYLTIPRASLAGR 266
Query: 197 ---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ N N + ++ G G+K G+T A+G V +A +G +LI +L
Sbjct: 267 GSTRFEIQNHNALLRSYEGTIGVKNGYTIAAGATFVGAATRGGHTLIVALL--RTAPAYG 324
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
K + +LL GF + + Y+ S+ +
Sbjct: 325 KDARALLDWGFAHADTVTPVGYLANPGATAAASSGPAGDRPSIS 368
>gi|300691350|ref|YP_003752345.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum PSI07]
gi|299078410|emb|CBJ51061.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum PSI07]
Length = 374
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 101/248 (40%), Gaps = 8/248 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + ++D +G V+ + AS+TKLMTA VV + +
Sbjct: 94 ATPDALALRSSVALVMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDTHQP----MDE 149
Query: 79 PITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ I+++ +Y + + + + +T ++ L L ++ S N A A+ + FV
Sbjct: 150 LLEITEDDRDYERNTGSRLRYGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAA 209
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN + LG++ TH+++++G+ + I+ K + + G
Sbjct: 210 MNRKAHELGMNDTHYVDSNGLSSSNVSSATDLAKIVMAAYKVPLIRQFTTTAEHTVNANG 269
Query: 198 KKYP--NTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ NTN V G KTGF +G +V A ++++ V L + TR
Sbjct: 270 RTLHYVNTNRLVRGGEWDIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTRFA 329
Query: 255 VSASLLSM 262
+A + +
Sbjct: 330 DAARVRNW 337
>gi|327489460|gb|EGF21253.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK1058]
Length = 451
Score = 128 bits (320), Expect = 1e-27, Method: Composition-based stats.
Identities = 79/384 (20%), Positives = 147/384 (38%), Gaps = 58/384 (15%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIA 43
M++ L+++ +A L+++ P + A+ + ++D +TG V+
Sbjct: 1 MKKKLLLLGIAFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVW 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKK 98
E+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 61 EDNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAG 120
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 121 VDYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGA 180
Query: 159 VQH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ TTARD+AIL++ P+ + Y + +K
Sbjct: 181 AAVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILDYTNKAKVTVKAGTPYEE 240
Query: 204 NWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251
+ + G DGMKTG + FN +A+ + DQ +IAVI+G D +
Sbjct: 241 TFETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKREDQRMIAVIMGVGDWSDQDG 300
Query: 252 ---RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKE 302
R+ +L+ + + +K ++ ++ Q V +E +
Sbjct: 301 EYYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENN 360
Query: 303 IINYNTQMKEAKDKESHFIDFEKI 326
++ +K K S + EK+
Sbjct: 361 VLKAENGLKTLSSKISDEMKVEKV 384
>gi|229060227|ref|ZP_04197596.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
gi|228719109|gb|EEL70721.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
Length = 338
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 71/274 (25%), Positives = 116/274 (42%), Gaps = 12/274 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L I A++ F + L+DTN+G ++ + P A+L+KLMT Y
Sbjct: 11 LLSFIITALIVLYFYLYVNGPIIQAKSALLIDTNSGEIVYKKNESTPIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V L + K L + IS + + S T+ + L L++ N A+ +
Sbjct: 71 IVMEQLHDGKIQLDESVQISNDVFQTETSPIHVTSNDKTTVRDLLNTLLLTGNNCSALEL 130
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSWRIKT 179
AE + E F MN +K L LS N+ GV + TT D+A L+ ++
Sbjct: 131 AEHIAGNEANFTMLMNEKAKQLKLSQPSPFLNSTGVNNEKNKQSITTTIDVANLAAQLVK 190
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFNIVAS 231
DFP + ++ + K + N + G DG++T + ++ V +
Sbjct: 191 DFPDVLSITKLTSYQFNFKDFQVFNTNKMIYSLNENIKLQGVDGLQTSLSTNGNYSFVGT 250
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A QGD I+V+L A + NT + LL GF
Sbjct: 251 AKQGDTRFISVVLDANEENTAFVETKKLLQYGFE 284
>gi|297584338|ref|YP_003700118.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
selenitireducens MLS10]
gi|297142795|gb|ADH99552.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Bacillus
selenitireducens MLS10]
Length = 363
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 10/272 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAET-NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
VI+ ++ + P AE Y ++D TG ++ PASLTK+ TA +
Sbjct: 13 VILFTGIMVMLMPIQISAEDEVVSEAYAVIDAKTGTLLDGKNHREEMYPASLTKIATAVI 72
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
L +TIS A + ++G ++T++ L +++ SAND ++A+A
Sbjct: 73 AIEH-----LDLDEEVTISNKAIHADGTRVYLEEGESLTVEQLLYGIMISSANDASIALA 127
Query: 125 ESLCKTEKKFVQHMNNTSKN-LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
E + + + F + MN +N +GL T+F N HG+ H TTA DMA + +
Sbjct: 128 EHIAGSVEAFSRLMNTYIQNEIGLENTYFTNPHGLFDEEHVTTAEDMARIMKYALENDTY 187
Query: 184 YMHYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ + + + K GF SG + S IQ LI
Sbjct: 188 RELAEKTDYHWQSEGWDTRIFHHHAMRRHYDFVTAGKNGFVSQSGLTLATSGIQDQTELI 247
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
V L A R+ + +L F
Sbjct: 248 VVNLNAPSRSRIVSDTLTLFERNFDLYETVTI 279
>gi|260663920|ref|ZP_05864773.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii
SJ-7A-US]
gi|260561806|gb|EEX27775.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus jensenii
SJ-7A-US]
Length = 397
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 60/381 (15%), Positives = 129/381 (33%), Gaps = 46/381 (12%)
Query: 1 MRQF-----------LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++F L II + LS + ++ ++D TG ++ +
Sbjct: 3 MKRFWDKLGLAGIVVLWIIGIINLSFFNIVKADVQSVNAKAAFMMDEKTGQILYQRNATK 62
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ ASLTK++T V+ + + K I ISK+ ++ ++
Sbjct: 63 KYAVASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWHFSNVPLVYNERYTVR 122
Query: 110 LLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------- 158
LI A E + + F M +K G+ N G+
Sbjct: 123 SLIESMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGD 182
Query: 159 -------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ +A+DMA++S + +P+ ++ + K K ++ ++
Sbjct: 183 LKLPKIDDNQENQFSAKDMALVSKYLIDKYPEVLNITKTKYANFKIRQDNEMKMENIIYM 242
Query: 212 -----------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-RNKVSASL 259
DG+KTG T A+G+ V + ++ +I V+L + + + ++
Sbjct: 243 LEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVPGEYSNQFIQTNNM 302
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK-----EAK 314
+ F K + YQ+ + +K+ + + + K
Sbjct: 303 IDTVFDKYQLVKVDKNNLPKKYQKITITSKKQKKKISVVPEKDSALWLQKKQNLSSLTPK 362
Query: 315 DKESHFIDFEKITLLKNKITK 335
+K +++ + K
Sbjct: 363 LIVKEQNKVKKGSIVAKLVYK 383
>gi|188534373|ref|YP_001908170.1| D-alanyl-D-alanine endopeptidase [Erwinia tasmaniensis Et1/99]
gi|188029415|emb|CAO97292.1| Penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase)
[Erwinia tasmaniensis Et1/99]
Length = 316
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 55/291 (18%), Positives = 101/291 (34%), Gaps = 18/291 (6%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ ++D N+ VI E++PD AS+TKLMT V L
Sbjct: 35 SSAAQPAIASGSAMIVDLNSNKVIYESHPDRVRPIASITKLMTVMVALDA----HLPLDE 90
Query: 79 PITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ + + E S + S ++ N + L ++ S N A ++A F++
Sbjct: 91 MLKVDVSHTPEMRGVYSRVRLNSEISRKNMMLLALMSSENRAAASLAHHYPGGYDAFIRA 150
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKG 192
MN ++ LG+S T ++ G+ + +TARD++ L + +
Sbjct: 151 MNAKARALGMSHTRYVEPTGL-SIENVSTARDLSKLLLATKRYPLIGQLSTTHEDMASFR 209
Query: 193 LEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ NTN V KTG+T +G +V + + + V+L A + T
Sbjct: 210 SPNYTLPFRNTNHLVYRPDWNIQLTKTGYTDEAGHCLVMRTVINQRPVSLVVLDAFGKYT 269
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN--EVPNISEEVCTTQ 300
+ L K + N+ + +
Sbjct: 270 HFADANRLRQW----IETGKVSAVPPAALSYKKDKAARVANNVRADDSVPE 316
>gi|315186124|gb|EFU19886.1| Serine-type D-Ala-D-Ala carboxypeptidase [Spirochaeta thermophila
DSM 6578]
Length = 387
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 73/316 (23%), Positives = 129/316 (40%), Gaps = 14/316 (4%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNAS 87
LL+ T V+ E D P ASLTKL+TAY+ +++ + + +
Sbjct: 28 FLLEPTTRTVLYEKQADLPHPAASLTKLVTAYLALQAVEDGLLQEDALLPVPSALARIPF 87
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
S + G+T+T L L ++ SAND A A+A L F MN +G
Sbjct: 88 PPDASLAGLAPGTTLTPAQLLSLTLIYSANDAAYALALLLAPDIPAFASRMNRLVHAMGY 147
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+ F G+ T + + Y + L + G+ Y N N +
Sbjct: 148 THLFFEEPSGLSPRNTITAREIALFAADYLDRFPSAPARYHAPRALTVGGRTYLNRNTLL 207
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LDRNTRNKVSASLLS 261
G + G +G+KTG+ SGF+IVA A +G SLIAV+LG R++ +A+LL
Sbjct: 208 GRYPGLEGLKTGYLEESGFHIVAYARRGPTSLIAVLLGIQAPGYWEGMQERDRQAAALLD 267
Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE----EVCTTQKEIINYNTQMKEAKDKE 317
GF + I+ ++ V + ++ + ++++ ++
Sbjct: 268 YGFDTYLTTEPPLTGIRPVRIWGGTHSTLTPRPARPLRVTLARTDLPRLSVEVEQVSERW 327
Query: 318 SHFIDFEKITLLKNKI 333
+ E++ ++ +
Sbjct: 328 APLHPGERLGTVRLLL 343
>gi|315121863|ref|YP_004062352.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
[Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495265|gb|ADR51864.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
[Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 357
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 98/316 (31%), Positives = 153/316 (48%), Gaps = 9/316 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+R I+ + ++ S A+ ++D D PASLTK+M
Sbjct: 30 LRSLWKILLLCIILTSMALKSHAKLE--YSSIVIDLLNDKRTNGFKQDKLRYPASLTKMM 87
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y++F L+ KK L T I +SK A+ PPS K+ + T++ + LI +SAND++
Sbjct: 88 TLYIIFEHLQSKKMHLNTKIPVSKTATIQPPSKLYLKENTFFTVEQGILALITRSANDVS 147
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A E + +EKKF M+N +K+LG++ T + NA G+ TTARD AIL I+ +
Sbjct: 148 TAFGEFISGSEKKFAILMSNKAKSLGMNHTTYKNASGLHDKNQKTTARDQAILGITIRKN 207
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
FPQY YF I+ + + K N N + G DG+KTG+T SGFNIVAS + S+I
Sbjct: 208 FPQYYKYFSIRKFQYRNKIILNHNKLINKIHGIDGIKTGYTRDSGFNIVASLQNENNSII 267
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
AV++G R++ + L++ F N ++ + + + T +
Sbjct: 268 AVVMGMPTCQKRDQKALELIN-SFLN------TKKTKHKPIWKSGNLTFSPTMKALITEK 320
Query: 301 KEIINYNTQMKEAKDK 316
+ N K K
Sbjct: 321 IKDSNQQLPKKYPVQK 336
>gi|283785939|ref|YP_003365804.1| penicillin-binding protein 7 [Citrobacter rodentium ICC168]
gi|282949393|emb|CBG89005.1| penicillin-binding protein 7 [Citrobacter rodentium ICC168]
Length = 308
Score = 128 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 68/280 (24%), Positives = 106/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V I L PF A ++D NT VI N+PD
Sbjct: 1 MLKFRVSILSLALMLAVPFAPQAAVKATATTVASQPEIASGSAMIVDLNTNKVIYANHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV L I+ + S + S ++ N L
Sbjct: 61 LVRPIASITKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGIYSRVRLNSEISRKNML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A F++ MN +K LG+S T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKALGMSHTRFVEPTGL-SIHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTRLLIASKQYPLIGQLSTTREDMATFSNPAYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTLINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|229057005|ref|ZP_04196399.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
gi|228720282|gb|EEL71858.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
Length = 407
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 73/326 (22%), Positives = 129/326 (39%), Gaps = 15/326 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPAEGPNVFSQFATTIDAKTGDMLYDKNAQHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAEHIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 131 FANMMNERAKQLGAKDSHFVTPNGLHDPNHYTTPYDMAMITRGVQKYPEILQAMNTKRTT 190
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ G KTGFT + +V + +I V++ A R
Sbjct: 191 VTTSTQTVSIFNKSTYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRPE 249
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F T + ++ K Y + S E+ + E N T
Sbjct: 250 IYEDLKQMTEYSFGQFTKQTVLDKHSWHQKTTYLNKDVDSELENSAELMLKKDEGKNVKT 309
Query: 309 QMKEAKDKESHFIDFEKITLLKNKIT 334
+ + ++K +
Sbjct: 310 AFRV--NSVDKEALYQKGIHRGEVVG 333
>gi|159038233|ref|YP_001537486.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola
CNS-205]
gi|157917068|gb|ABV98495.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola
CNS-205]
Length = 416
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 62/297 (20%), Positives = 111/297 (37%), Gaps = 20/297 (6%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + D +TG V+ P PAS+ KL+ A + +
Sbjct: 75 LVTPAGGPQPPGVTATSWLVADLDTGQVLGACGPHEHGTPASVQKLLLAAALMP-----R 129
Query: 74 AMLTTPITISKNASEYPPSNSTFK--KGSTMTLDNALKLLIVKSANDIAVAIAE--SLCK 129
+T++K + +S G ++ L+++S N+ A +A +
Sbjct: 130 LDPQQVVTVTKEDLDIERGSSAVGLLAGGRYPVETVWLGLLLQSGNEAANVLARLGGGAE 189
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
V+ MN ++ LG TH G+ G +T+A D+A+++ D +
Sbjct: 190 GRAGGVRAMNEFAEYLGARQTHAATPSGLDGPGQFTSAYDLALIARVCFADPTFRRYALT 249
Query: 190 IKGLEI-------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
KG + N N VG + GA G KTGFT + V +A + + L+
Sbjct: 250 ETHRIPAQEQLGKKGFQIQNGNPLVGRYPGALGGKTGFTSLARHTYVGAAERDGRRLVVT 309
Query: 243 ILGALDRNTR-NKVSASLLSMGF---YNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
+LGA R R + A LL GF + + + + + P ++ +
Sbjct: 310 LLGAESRPMRGWEQGAVLLDWGFALPRDASVGRLVEPGQPTPTPTQSPSVTPPMAAD 366
>gi|187929017|ref|YP_001899504.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia
pickettii 12J]
gi|187725907|gb|ACD27072.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ralstonia
pickettii 12J]
Length = 396
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 104/253 (41%), Gaps = 10/253 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + ++D N G V+ + AS+TKLMTA VV + +L
Sbjct: 116 STPDALALRSSVALVMDQNNGEVLFQKNSSAVLPIASITKLMTALVVTDAHQPMDELLEI 175
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
++ + S + G+ +T ++ L L ++ S N A A+ + FV M
Sbjct: 176 TD---EDRDYERNTGSRLRFGTMLTREDLLLLALMSSENRAASALGRNYPGGRPAFVAAM 232
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N + LG++ TH+++++G+ + ++A+D+A + P + +
Sbjct: 233 NRKAHELGMNDTHYVDSNGL-SSSNVSSAQDLAKI-VIAAYKVPLIRQFTTTPEHTVSAN 290
Query: 196 -KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ Y NTN V G KTGF +G +V A ++++ V L + TR
Sbjct: 291 GRTLHYVNTNRLVRGGEWDIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTRF 350
Query: 254 KVSASLLSMGFYN 266
+ + + N
Sbjct: 351 ADATRVRNWLERN 363
>gi|89894346|ref|YP_517833.1| hypothetical protein DSY1600 [Desulfitobacterium hafniense Y51]
gi|89333794|dbj|BAE83389.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 364
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/285 (23%), Positives = 116/285 (40%), Gaps = 9/285 (3%)
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PAS TK+MT + + + + + + + + + G ++L++ L
Sbjct: 1 MAPASTTKIMTGLLGIELGNPEDIVTASETML--DYTTVYGTRIYLEPGEQLSLEDMLYA 58
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
L++ SAND AVAIAE + FV MN + +LGL T F N G+ + GH TTA D+
Sbjct: 59 LLLNSANDAAVAIAEHISGNTSAFVSLMNQRAADLGLKNTTFKNPSGLNEEGHLTTAHDL 118
Query: 171 AILSWRIK-----TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
A ++ D+ + + + E + N N + GMKTG+T +
Sbjct: 119 ARIAQAAYANPVFRDYIKTKSHVIPRAKENVPIEMINENKLLWRDDTITGMKTGYTSVAQ 178
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285
+VASA + + +I VIL + R +LL GF + +
Sbjct: 179 NCLVASASRDGRDVIGVILKSPGREI-YTDMQALLDYGFEQFENTLYKGVGDSLGQLEIQ 237
Query: 286 SNEVPNISEE-VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
V + ++ + TQK+ + + + +L
Sbjct: 238 GQPVNLLIDQALWITQKKDNTLPQPRINILPIDGELAEVAEGQVL 282
>gi|294631036|ref|ZP_06709596.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
gi|292834369|gb|EFF92718.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
Length = 483
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/289 (14%), Positives = 95/289 (32%), Gaps = 30/289 (10%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFLKEK 72
+ + + + D +G V+A + PAS K++ T F ++
Sbjct: 121 AAGVPVLPKDLTARSWIVADAESGQVLAAHNAHWRLPPASTLKMLFADTVLPKFPATQQH 180
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
K + + I +N+S + + L L+ AV + ++
Sbjct: 181 KVVASDLAGIGENSSMVGIKENESYSVRDLWLGVFLRSGND------AVHVLSAMNGGVA 234
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+ V MN +++L T ++ G ++A D+ + + + ++
Sbjct: 235 QTVADMNAHAQDLQALDTQVVSPDGYDAPNQVSSAYDLTLFARSGLQKKDFRTYCSTVRA 294
Query: 193 L-------------EIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAI 233
+ NT+ + + G G+K G T +G A
Sbjct: 295 QFPGETKKDKKGKSTRTSFEIQNTDRLLSGDYDISVYPGIAGVKNGNTTNAGATFTGVAE 354
Query: 234 QGDQSLIAVILGALDR--NTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
+G + L+ ++ + N + +A L GF + + ++
Sbjct: 355 RGGRVLLVTVMNPEKKDHNEVYRETAKLFDWGFTAAGKVRPVGELVPPK 403
>gi|262379926|ref|ZP_06073081.1| D-alanyl-D-alanine endopeptidase [Acinetobacter radioresistens
SH164]
gi|262298120|gb|EEY86034.1| D-alanyl-D-alanine endopeptidase [Acinetobacter radioresistens
SH164]
Length = 352
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/253 (24%), Positives = 97/253 (38%), Gaps = 14/253 (5%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF--LKEKKA 74
+ ++D TG V+ + AS+TKLMTA V ++
Sbjct: 99 STSYVNQPSVNARAALVMDAQTGEVLFSKNTNTALPIASITKLMTAVVTSDARLNMSEEI 158
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L I ++ST + G M L ++KS N A A+A + + F
Sbjct: 159 TLQPIDFIGPK-----KASSTLRAGDKMNRAEVLLFALMKSENPAAAALARTYPGGKPAF 213
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MN ++ LG+ + F + G+ + +ARD+ IL + + + +
Sbjct: 214 VAAMNAKARELGMHSAKFYESTGLDA-RNVASARDLGILVS-AASQYGLIRQFSTTPTYD 271
Query: 195 IKGK----KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K NTN V + KTGF +G +V A + I V+LGA D
Sbjct: 272 FNLGYRVLKSNNTNALVRNGGWNINLSKTGFINEAGRCVVMHATVNQRPAIVVLLGASDT 331
Query: 250 NTRNKVSASLLSM 262
+RN + L S
Sbjct: 332 QSRNNDATRLFSW 344
>gi|207724146|ref|YP_002254544.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein)
[Ralstonia solanacearum MolK2]
gi|206589355|emb|CAQ36317.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein)
[Ralstonia solanacearum MolK2]
Length = 431
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 100/248 (40%), Gaps = 8/248 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + ++D +G V+ + AS+TKLMTA VV + +
Sbjct: 112 ATPDALALRSSVALVMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDAHQP----MDE 167
Query: 79 PITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ I+++ +Y + + + + +T ++ L L ++ S N A A+ S FV
Sbjct: 168 LLEITEDDRDYERNTGSRLRYGTMLTREDLLLLALMSSENRAASALGRSYPGGRPAFVAA 227
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN + LG++ TH+++++G+ + I+ K + + G
Sbjct: 228 MNRKAHELGMNDTHYVDSNGLSSSNVSSAMDLSKIVMAAYKVPLIRQFTTTAEHTVNANG 287
Query: 198 KKYP--NTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ NTN V G KTGF +G +V A ++++ V L + TR
Sbjct: 288 RTLHYVNTNRLVRGGEWEIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTRFA 347
Query: 255 VSASLLSM 262
+ + +
Sbjct: 348 DAVRVRNW 355
>gi|22126890|ref|NP_670313.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis KIM 10]
gi|45440799|ref|NP_992338.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis biovar Microtus
str. 91001]
gi|51595561|ref|YP_069752.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis IP
32953]
gi|149366829|ref|ZP_01888863.1| penicillin-binding protein 7 precursor [Yersinia pestis CA88-4125]
gi|162100180|ref|YP_650800.2| D-alanyl-D-alanine endopeptidase [Yersinia pestis Antiqua]
gi|162139430|ref|YP_648728.2| D-alanyl-D-alanine endopeptidase [Yersinia pestis Nepal516]
gi|162418831|ref|YP_001605881.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis Angola]
gi|165924784|ref|ZP_02220616.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165938339|ref|ZP_02226897.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
str. IP275]
gi|166009970|ref|ZP_02230868.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166211300|ref|ZP_02237335.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167400360|ref|ZP_02305873.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167419589|ref|ZP_02311342.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423973|ref|ZP_02315726.1| penicillin-binding protein 7 [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167466748|ref|ZP_02331452.1| penicillin-binding protein 7 [Yersinia pestis FV-1]
gi|218928339|ref|YP_002346214.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis CO92]
gi|229841118|ref|ZP_04461277.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229843222|ref|ZP_04463368.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229894160|ref|ZP_04509346.1| Murein-DD-endopeptidase [Yersinia pestis Pestoides A]
gi|229903394|ref|ZP_04518507.1| Murein-DD-endopeptidase [Yersinia pestis Nepal516]
gi|270487204|ref|ZP_06204278.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis KIM D27]
gi|294503194|ref|YP_003567256.1| penicillin-binding protein 7 precursor [Yersinia pestis Z176003]
gi|21959926|gb|AAM86564.1|AE013903_1 penicillin-binding protein 7 [Yersinia pestis KIM 10]
gi|45435657|gb|AAS61215.1| penicillin-binding protein 7 precursor [Yersinia pestis biovar
Microtus str. 91001]
gi|51588843|emb|CAH20457.1| penicillin-binding protein 7 precursor [Yersinia pseudotuberculosis
IP 32953]
gi|115346950|emb|CAL19840.1| penicillin-binding protein 7 precursor [Yersinia pestis CO92]
gi|149291203|gb|EDM41278.1| penicillin-binding protein 7 precursor [Yersinia pestis CA88-4125]
gi|162351646|gb|ABX85594.1| penicillin-binding protein 7 [Yersinia pestis Angola]
gi|165913717|gb|EDR32336.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
str. IP275]
gi|165923844|gb|EDR40976.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165991366|gb|EDR43667.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166207071|gb|EDR51551.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962330|gb|EDR58351.1| penicillin-binding protein 7 [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167050309|gb|EDR61717.1| penicillin-binding protein 7 [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167056822|gb|EDR66585.1| penicillin-binding protein 7 [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229679164|gb|EEO75267.1| Murein-DD-endopeptidase [Yersinia pestis Nepal516]
gi|229689569|gb|EEO81630.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229697484|gb|EEO87531.1| Murein-DD-endopeptidase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229704045|gb|EEO91058.1| Murein-DD-endopeptidase [Yersinia pestis Pestoides A]
gi|262361233|gb|ACY57954.1| penicillin-binding protein 7 precursor [Yersinia pestis D106004]
gi|262365230|gb|ACY61787.1| penicillin-binding protein 7 precursor [Yersinia pestis D182038]
gi|270335708|gb|EFA46485.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis KIM D27]
gi|294353653|gb|ADE63994.1| penicillin-binding protein 7 precursor [Yersinia pestis Z176003]
gi|320015987|gb|ADV99558.1| Murein-DD-endopeptidase [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 311
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/262 (24%), Positives = 109/262 (41%), Gaps = 12/262 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A+A S + + ++D T VI N D AS+TKLMTA VV
Sbjct: 24 LAIARGSAVEVKGTAPLELASGSAMVVDLQTNKVIYANNADKVVPIASITKLMTAMVVLD 83
Query: 68 FLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
K L +++ + ++ S + S ++ + L L ++ S N A ++A
Sbjct: 84 A----KLPLDEILSVDIDQTKELKGVFSRVRVNSEISRKDMLLLTLMSSENRAAASLAHH 139
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YM 185
F++ MN +K+LG+++TH++ G+ + +TARD+A L K +
Sbjct: 140 YPGGYNAFIKAMNAKAKSLGMNSTHYVEPTGL-SINNVSTARDLAKLLMATKQYPLIGQL 198
Query: 186 HYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLI 240
K + Y NTN V KTGFT +G +V + G + +
Sbjct: 199 STTTEKMATFREPNYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVA 258
Query: 241 AVILGALDRNTRNKVSASLLSM 262
V+L A + T + L S
Sbjct: 259 LVVLDAFGKYTHFADANRLRSW 280
>gi|212695505|ref|ZP_03303633.1| hypothetical protein ANHYDRO_00021 [Anaerococcus hydrogenalis DSM
7454]
gi|212677505|gb|EEB37112.1| hypothetical protein ANHYDRO_00021 [Anaerococcus hydrogenalis DSM
7454]
Length = 408
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 77/362 (21%), Positives = 139/362 (38%), Gaps = 30/362 (8%)
Query: 1 MRQ-------FLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAEN 45
M++ L I+ + N+F SIA + Y + + +G + +
Sbjct: 1 MKRKYKISALILAILFLFSPLNVFADESIAKEGDNVVGADKDVRAYLIGNQESGDIFYQK 60
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTM 102
D + AS++KLMT + + K T + +K A + + K+G
Sbjct: 61 NADKTYPIASMSKLMTFLLTREAIDSGKISYDTKVKGTKEAEDLTGPEYSSLGIKEGEEY 120
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG---VV 159
T+ + LIV S ND A +A + +E F + MN ++ L L + + NA G
Sbjct: 121 TIKELITGLIVVSGNDCANLLASKISGSEDNFAKEMNKKAQELNLKSQKYYNASGVNTED 180
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMK 217
+ ++A+D+ L+ I +P + Y + G++ K +T G G DG+K
Sbjct: 181 DTQNSSSAKDLFELTRIILKKYPDILEYSNMDGIDDNKKDIHKKSTIPLKGDIKGVDGLK 240
Query: 218 TGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
TG T +G ++ + + D I++++GA D TR+ L+ +K
Sbjct: 241 TGTTEEAGSCLITTIDMGKFDPKNDYRAISIVMGAKDHPTRDAAMTDLIYYVSRYFNYKK 300
Query: 272 KINY-IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ DF + N E I N + + K+ +K L
Sbjct: 301 LADKQTPSDFVKVNSVKEGYVELYPDQDVGFIIKNKSMPNVKTDIKKDIKAPIKKGEKLG 360
Query: 331 NK 332
Sbjct: 361 KV 362
>gi|303256971|ref|ZP_07342985.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderiales
bacterium 1_1_47]
gi|302860462|gb|EFL83539.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderiales
bacterium 1_1_47]
Length = 377
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 7/246 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S D +T V+ E D P AS+TKLMTA V+ L
Sbjct: 126 SSDPLGLSSTAVLAYDMDTNQVLYEKNADQPLPIASITKLMTALVIVESG----VNLDDK 181
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
T+++ ++S + G ++ AL L ++ S N A +A + + +F++ MN
Sbjct: 182 FTVTREDFVPSSAHSKLRMGMEISRRQALHLALMSSDNRAAHFLARTYPTGKAQFIKEMN 241
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+ LG+ + F ++ G+ + +++ + + + I ++
Sbjct: 242 IKAALLGMKDSVFYDSIGLNNDNRSSAVDLSYLITGASEYALIRELSTTPEASFRIGKRE 301
Query: 200 Y--PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
TN + + KTG T A+G+ +V A +++ + L + ++ R +
Sbjct: 302 VISSTTNRLIKDEDWDIELQKTGLTTAAGYCMVMQAHVDGKNVAFIFLDSPNKYARANDA 361
Query: 257 ASLLSM 262
L S
Sbjct: 362 EKLRSY 367
>gi|325846139|ref|ZP_08169233.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481732|gb|EGC84767.1| serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 408
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 78/362 (21%), Positives = 139/362 (38%), Gaps = 30/362 (8%)
Query: 1 MRQ-------FLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAEN 45
M++ L I+ + N+F SIA + Y + + +G + +
Sbjct: 1 MKRKYKISALILAILFLFSPLNVFADDSIAKEGDNVVGADKDVRAYLIGNQESGDIFYQK 60
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST---FKKGSTM 102
D + AS++KLMT + + K T + +K A + + K+G
Sbjct: 61 NADKTYPIASMSKLMTFLLTREAIDSGKISYDTKVKGTKEAEDLTGPEYSSLGIKEGEEY 120
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG---VV 159
T+ + LIV S ND A +A + +E F + MN ++ L L + + NA G
Sbjct: 121 TIKELITGLIVVSGNDCANLLASKISGSEDNFAKEMNKKAQELNLKSQKYYNASGVNTED 180
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMK 217
+ ++A+D+ LS I +P + Y + G++ K +T G G DG+K
Sbjct: 181 DTQNSSSAKDLFELSRIILKKYPDILEYSNMDGIDDNKKDIHKKSTIPLKGDIKGVDGLK 240
Query: 218 TGFTCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
TG T +G ++ + + D I++++GA D TR+ L+ +K
Sbjct: 241 TGTTEEAGSCLITTIDMGKFDPKNDYRAISIVMGAKDHPTRDAAMTDLIYYVSRYFNYKK 300
Query: 272 KINY-IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ DF + N E I N + + K+ +K L
Sbjct: 301 LADKQTPSDFVKVNSVKEGYVELYPDQDVGFIIKNKSMPNVKTDIKKDIKAPIKKGEKLG 360
Query: 331 NK 332
Sbjct: 361 KV 362
>gi|254733982|ref|ZP_05191696.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Western North America USA6153]
Length = 407
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 74/327 (22%), Positives = 134/327 (40%), Gaps = 17/327 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + T +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPKEGPNVFSQFATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 131 FANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITR-GVQKYPEILQAMNTKRT 189
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 190 TVTTSRQTVSIFNKSTYFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 248
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E+ N
Sbjct: 249 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEVKNVK 308
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKIT 334
T + A + + K +
Sbjct: 309 TTFRAASLDKDSL--YHKGIHRGEVVG 333
>gi|238788777|ref|ZP_04632568.1| D-alanyl-D-alanine endopeptidase [Yersinia frederiksenii ATCC
33641]
gi|238723082|gb|EEQ14731.1| D-alanyl-D-alanine endopeptidase [Yersinia frederiksenii ATCC
33641]
Length = 322
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 62/248 (25%), Positives = 97/248 (39%), Gaps = 12/248 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
++D T VI N D AS+TKLMTA VV K L I+
Sbjct: 49 APLELASGSAMVIDLQTNKVIYSNNADEVVPIASITKLMTAMVVLDA----KLPLDEIIS 104
Query: 82 IS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ E S + S ++ + L L ++ S N A ++A F++ MN
Sbjct: 105 VDIHQTKEMKGVYSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNA 164
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKK 199
+K+LG++ T ++ G+ G+ +TARD+ L K + K +
Sbjct: 165 KAKSLGMTKTRYVEPTGL-SIGNVSTARDLTKLLVATKQYPLIGQLSTTTEKMATFRDPN 223
Query: 200 Y----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
Y NTN V KTGFT +G + + G + + V+L A + T
Sbjct: 224 YTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGHRPVALVVLDAFGKYTHFA 283
Query: 255 VSASLLSM 262
+ L S
Sbjct: 284 DANRLRSW 291
>gi|326442983|ref|ZP_08217717.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
clavuligerus ATCC 27064]
Length = 415
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 46/279 (16%), Positives = 88/279 (31%), Gaps = 17/279 (6%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFL 69
+S + + + + D +G V+A + P PAS K++ T
Sbjct: 69 VSLGTGAPVLPKDLTARSWVVADAESGEVLAAHNPHWRLAPASTLKMLFADTLLPKLPKA 128
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K + N+S + L L+ AV + +L
Sbjct: 129 TTHKVSADELADVGLNSSVVGVEEDMTYSIHDLWLGVFLRSGND------AVHVLSALNG 182
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
K VQ M ++ L T ++ G G ++A D+ +++ +
Sbjct: 183 GIDKTVQDMQAHAEELQALDTQVVSPDGYDAAGQVSSAYDLTLIARSGLQKKDFREYSAT 242
Query: 190 IKGLEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + TN + + G G+K G T +G A +G + L+ +
Sbjct: 243 MTADFPGKGQIVTTNRLLTGDFGLDPYKGLAGVKNGSTTHAGATFTGVAERGGRVLLVTV 302
Query: 244 LGALDR--NTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
+ N K + LL GF + ++
Sbjct: 303 MNPESEENNAVYKETERLLDWGFAAAGKVTPVGELVPPK 341
>gi|294814595|ref|ZP_06773238.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
gi|294327194|gb|EFG08837.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
Length = 434
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 46/279 (16%), Positives = 88/279 (31%), Gaps = 17/279 (6%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFL 69
+S + + + + D +G V+A + P PAS K++ T
Sbjct: 88 VSLGTGAPVLPKDLTARSWVVADAESGEVLAAHNPHWRLAPASTLKMLFADTLLPKLPKA 147
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K + N+S + L L+ AV + +L
Sbjct: 148 TTHKVSADELADVGLNSSVVGVEEDMTYSIHDLWLGVFLRSGND------AVHVLSALNG 201
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
K VQ M ++ L T ++ G G ++A D+ +++ +
Sbjct: 202 GIDKTVQDMQAHAEELQALDTQVVSPDGYDAAGQVSSAYDLTLIARSGLQKKDFREYSAT 261
Query: 190 IKGLEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + TN + + G G+K G T +G A +G + L+ +
Sbjct: 262 MTADFPGKGQIVTTNRLLTGDFGLDPYKGLAGVKNGSTTHAGATFTGVAERGGRVLLVTV 321
Query: 244 LGALDR--NTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
+ N K + LL GF + ++
Sbjct: 322 MNPESEENNAVYKETERLLDWGFAAAGKVTPVGELVPPK 360
>gi|163939181|ref|YP_001644065.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
gi|163861378|gb|ABY42437.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
Length = 428
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 80/354 (22%), Positives = 139/354 (39%), Gaps = 32/354 (9%)
Query: 4 FLVIIAMAMLS---------------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD 48
F+++I + L+ + P + + T +D TG ++ +
Sbjct: 10 FVMVICLFFLTPMTLYAETNIGVNPEQVAPPPAEGPNVFSQFATTIDAKTGDMLYDKNAH 69
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDN 106
H PAS+TK++TA ++ K T S+ A + SN F G T+ +
Sbjct: 70 HRAFPASMTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFHPGETINRNT 124
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
AL +L+V SAND++ AIAE + + + F MN +K LG +HF+ +G+ HYTT
Sbjct: 125 ALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGAKDSHFVTPNGLHDPNHYTT 184
Query: 167 ARDMAILSW--RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
DMA+++ + + Q M+ + + G KTGFT +
Sbjct: 185 PYDMAMITRGVQKYPEILQAMNTKRTTVTTSTQTVSIFNKSTYFENPYSMGGKTGFTNEA 244
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDFY 281
+V + +I V++ A R + + F T + ++ K Y
Sbjct: 245 RNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMAEYSFGQFTKQTVLDKHSWHQKAKY 303
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK-DKESHFIDFEKITLLKNKIT 334
+ S E+ + E N T + DKES ++K +
Sbjct: 304 LNKDVDSELEKSAELMLKKDEGKNIKTAFRVNSVDKESL---YQKGIHRGEVVG 354
>gi|153948552|ref|YP_001401770.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis IP
31758]
gi|152960047|gb|ABS47508.1| penicillin-binding protein 7 [Yersinia pseudotuberculosis IP 31758]
Length = 311
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 66/262 (25%), Positives = 109/262 (41%), Gaps = 12/262 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A+A S + + ++D T VI N D AS+TKLMTA VV
Sbjct: 24 LAIARGSAVEVKGTAPLELASGSAMVVDLQTNKVIYANNADKVVPIASITKLMTAMVVLD 83
Query: 68 FLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
K L +++ + ++ S + S ++ + L L ++ S N A ++A
Sbjct: 84 A----KLPLDEILSVDIDQTKELKGVFSRVRVNSEISRKDMLLLTLMSSENRAAASLAHH 139
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YM 185
F++ MN +K+LG+S+TH++ G+ + +TARD+A L K +
Sbjct: 140 YPGGYNAFIKAMNAKAKSLGMSSTHYVEPTGL-SINNVSTARDLAKLLMATKQYPLIGQL 198
Query: 186 HYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLI 240
K + Y NTN V KTGFT +G +V + G + +
Sbjct: 199 STTTEKMATFREPNYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVA 258
Query: 241 AVILGALDRNTRNKVSASLLSM 262
V+L A + T + L S
Sbjct: 259 LVVLDAFGKYTHFADANRLRSW 280
>gi|308186137|ref|YP_003930268.1| penicillin-binding protein 7 [Pantoea vagans C9-1]
gi|308056647|gb|ADO08819.1| penicillin-binding protein 7 [Pantoea vagans C9-1]
Length = 315
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/279 (20%), Positives = 106/279 (37%), Gaps = 20/279 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
+R L+ +A+ + I + A ++D T V+ ++PD
Sbjct: 5 IRSTLLSLALLVSGQIVSLPAQATTSLSQLTPIAQPQIASGSAMIVDLTTNKVLFSSHPD 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV M+ I+ + S K S ++ N +
Sbjct: 65 RVRPIASITKLMTAMVVLDAHLPMNEMINVDISQTPE---MRGVFSRVKLNSQISRRNMM 121
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A + + F+Q MN +++LG+ T ++ G+ +
Sbjct: 122 LLALMSSENRAAASLAHAYPGGYRAFIQAMNAKARSLGMKQTRYVEPTGLSTQNVSSAQD 181
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCA 223
+ +L + + + + Y NTN V KTG+T
Sbjct: 182 LVKLLKATREYPMLGALSTTKEETAVFAHPSYALPFRNTNHLVYKNDWHIQLTKTGYTDE 241
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + ++ + V+L A + T + L S
Sbjct: 242 AGHCLVMRTMINNRPVALVVLDAFGKYTHFADANRLRSW 280
>gi|82703413|ref|YP_412979.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Nitrosospira
multiformis ATCC 25196]
gi|82411478|gb|ABB75587.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Nitrosospira multiformis ATCC 25196]
Length = 278
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/278 (21%), Positives = 105/278 (37%), Gaps = 16/278 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M+ ++++ + F A+ + + ++D G V+ D AS+TKL
Sbjct: 1 MKNAILVVCATLAFMGGAFAKPADLSLRSNSALVVDPQRGQVLFHKNADSVMPIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
MTA VV L I I S + + S + G+ T L+L ++ S N
Sbjct: 61 MTAMVVLDAK----LPLNQEIVIDSADVDVIKYTRSRLRVGTKFTRGELLRLALMSSENR 116
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT------TARDMAI 172
A A+ + FV MN + LG+ +T+F+++ G+ T +
Sbjct: 117 AAAALGRTYPGGLNAFVAAMNRKAFQLGMGSTYFVDSTGLNSGNVSTARDLAKMVKAAHG 176
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVAS 231
+ + + Y N+N V + G+ KTGF +G +V
Sbjct: 177 YRLIRVFSTTAAHEVASMGKVRSRNLNYVNSNRLVRSSSWDIGISKTGFLSEAGRCLVMH 236
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSM---GFYN 266
A + I V+L + +N+R + + GF
Sbjct: 237 ANITGKPTIIVLLDSWGKNSRIGDANRIKKWLETGFTR 274
>gi|256397559|ref|YP_003119123.1| serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila
DSM 44928]
gi|256363785|gb|ACU77282.1| Serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila
DSM 44928]
Length = 410
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/256 (21%), Positives = 102/256 (39%), Gaps = 6/256 (2%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ I K + + D TG ++AE P PAS K++TA + L
Sbjct: 50 VAVPGTPPIPPDVKAGSFVIADEATGAILAERAPHDRLRPASTLKVLTALALMPRLDPAA 109
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
L+ P I+ A+ P +++ K + L + + + A+A ++
Sbjct: 110 VHLSVPGDIASLATAEPGASAVGIKPGLSYRVSDLWNAVFLRSGNDAIATLAAMAGGAGP 169
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----PQYMHYFQ 189
V M T++ L + T +NA G G ++A D+A+++ D + +
Sbjct: 170 TVDLMRQTAQRLHANDTVVVNADGYDADGQVSSAYDLALMARAGLQDPGFRAYCSLQKAK 229
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ + N N +G + G G+K G+T + V +A + ++L+ + A
Sbjct: 230 FPSVNGTTFEIDNENRLLGKYPGMIGVKNGYTSLAHHTFVGAAERNGRTLVVSVFDAGTD 289
Query: 250 NTRNKVSASLLSMGFY 265
+ +A LL GF
Sbjct: 290 I--YQQTAKLLDWGFA 303
>gi|83745865|ref|ZP_00942922.1| D-alanyl-D-alanine-endopeptidase [Ralstonia solanacearum UW551]
gi|207742996|ref|YP_002259388.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein)
[Ralstonia solanacearum IPO1609]
gi|83727555|gb|EAP74676.1| D-alanyl-D-alanine-endopeptidase [Ralstonia solanacearum UW551]
gi|206594393|emb|CAQ61320.1| d-alanyl-d-alanine-endopeptidase (penicillin-binding protein)
[Ralstonia solanacearum IPO1609]
Length = 392
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 100/248 (40%), Gaps = 8/248 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + ++D +G V+ + AS+TKLMTA VV + +
Sbjct: 112 ATPDALALRSSVALVMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDAHQP----MDE 167
Query: 79 PITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ I+++ +Y + + + + +T ++ L L ++ S N A A+ S FV
Sbjct: 168 LLEITEDDRDYERNTGSRLRYGTMLTREDLLLLALMSSENRAASALGRSYPGGRPAFVAA 227
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN + LG++ TH+++++G+ + I+ K + + G
Sbjct: 228 MNRKAHELGMNDTHYVDSNGLSSSNVSSAMDLSKIVMAAYKVPLIRQFTTTAEHAVNANG 287
Query: 198 KKYP--NTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ NTN V G KTGF +G +V A ++++ V L + TR
Sbjct: 288 RTLHYVNTNRLVRGGEWEIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTRFA 347
Query: 255 VSASLLSM 262
+ + +
Sbjct: 348 DAVRVRNW 355
>gi|229010663|ref|ZP_04167863.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
gi|228750628|gb|EEM00454.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
Length = 407
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 77/327 (23%), Positives = 131/327 (40%), Gaps = 17/327 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPAEGPNVFSQFATTIDAKTGDMLYDKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFHPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 131 FANMMNERAKQLGAKDSHFVTPNGLHDPNHYTTPYDMAMITRGVQKYPEILQAMNTKRTT 190
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ G KTGFT + +V + +I V++ A R
Sbjct: 191 VTTSTQTVSIFNKSTYFENPYSMGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRPE 249
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F T + ++ K Y + S E+ + E N T
Sbjct: 250 IYEDLKQMAEYSFGQFTKQTVLDKHSWHQKAKYLNKDVDSELEKSAELMLKKDEGKNIKT 309
Query: 309 QMKEAK-DKESHFIDFEKITLLKNKIT 334
+ DKES ++K +
Sbjct: 310 AFRVNSVDKESL---YQKGIHRGEVVG 333
>gi|111220633|ref|YP_711427.1| putative D-alanyl-D-alanine carboxypeptidase [Frankia alni ACN14a]
gi|111148165|emb|CAJ59835.1| Putative D-alanyl-D-alanine carboxypeptidase (partial match)
[Frankia alni ACN14a]
Length = 541
Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/258 (23%), Positives = 104/258 (40%), Gaps = 12/258 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ + D +G V+A + P P PAS K++TA V IT+ +N
Sbjct: 79 LTAQAWLVADAGSGAVLAASRPHAPDLPASTMKILTALTVLP-----GLPPDRVITVDEN 133
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
A + G T+ + +++ S ND VA+ E+ T + MN +++L
Sbjct: 134 APRVDGTKVGLVPGVGYTVRDLATAMMISSGNDATVALVEAAGGT-AAVLARMNALARSL 192
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---- 201
G T + G+ G T+ D+A+L D + +
Sbjct: 193 GTRETVAGDPTGLDSPGQVTSVYDLAVLGRAALNDPSVRGYLTIPRASLAGRGDQRFEIQ 252
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N N + T+ GA G+K G+T A+G V +A +G ++LI +L A + +LL
Sbjct: 253 NHNALLRTYDGAVGVKNGYTVAAGATFVGAATRGGRTLIVALLRA--APAYGTDARALLD 310
Query: 262 MGFYNKTDRKKINYIIKD 279
GF + + Y+
Sbjct: 311 WGFAHADQVTPVGYLPNP 328
>gi|291545877|emb|CBL18985.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
Length = 277
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/260 (26%), Positives = 114/260 (43%), Gaps = 17/260 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M +++ A+ ++ IFP + E L+D G V+ AS TK+
Sbjct: 1 MAAVVLVTAVLIICQIFPVKAADDENLYALSAVLMDGENGRVLYGKEAYKGRPNASTTKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT + K + +S NA+ P + ++G L++ L L++KS ND
Sbjct: 61 MTCILALELAKG-----DDYVQVSGNAASQPQTRLGMREGQQFYLEDLLYSLMLKSHNDS 115
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSW 175
AVAIAE + + + F + MN +K LG THF+ +G+ H+TTARD+A++
Sbjct: 116 AVAIAEHIGGSVEGFAEKMNEKAKELGCKDTHFVTPNGLDGEDEGGIHHTTARDLALIMA 175
Query: 176 RIKTDFPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ ++H Q + K NTN + G KTGFT +G+ V
Sbjct: 176 YAIKN-ATFVHITQTRDYTFTDISGKKHYSVHNTNAFLDMETGVISGKTGFTGNAGYCYV 234
Query: 230 ASAIQGDQSLIAVILGALDR 249
+ Q ++ I +LG
Sbjct: 235 CAVRQDERLFIVALLGCGWP 254
>gi|222152531|ref|YP_002561706.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J]
gi|222113342|emb|CAR40942.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis
0140J]
Length = 416
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 66/337 (19%), Positives = 136/337 (40%), Gaps = 28/337 (8%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++ + + K D +TG V+ + ASL+K++T Y+V+ +K
Sbjct: 18 INFVNADSTEDFHVKAKSAIAFDVSTGKVLYQKNEKEVLPVASLSKVLTTYLVYKEVKSG 77
Query: 73 KAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K TP+TIS ++ T+ L ++V +AN A+A+AE +
Sbjct: 78 KLSWDTPVTISNYPYELTTNYSISNVPLDARQYTVKELLNAVLVTNANSAAIALAEKISG 137
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMAILSW 175
TE +FV M K G+ +NA G+ + +A D+AI+S
Sbjct: 138 TEPRFVDLMTKQLKEWGIKDAKLVNATGLSNAILGDHIYPYSTSDDENQMSALDLAIVSN 197
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVAS 231
+ ++FP+ + + Q +K + N+ + G +G+ ++ SG + +AS
Sbjct: 198 HLLSEFPEVLKHTQKASATFSNQKIFSYNYMLKGMPNYRDGVNGLFVAYSEKSGASFLAS 257
Query: 232 AIQGDQSLIAVILGALDRNT----RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + + S++ V+L A N + + +LL+ + + K
Sbjct: 258 STENNMSVVTVVLNAEQSNEEELGHFRETNTLLNYISNHFEPVILLEKGKKVP---KTKL 314
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
+ + ++ + + ++D +S ID++
Sbjct: 315 NLLDGKQKSVNLIAKKNLIGIRKIGSQDGDSVTIDYK 351
>gi|29839835|ref|NP_828941.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila caviae GPIC]
gi|29834182|gb|AAP04819.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila caviae GPIC]
Length = 433
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 64/363 (17%), Positives = 124/363 (34%), Gaps = 40/363 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R L+ + + S + ++ + TG V+ D PAS+TK+ T
Sbjct: 7 RSGLIGFFAGIFTIPSYANSPFPETRGNAVAVIQSETGKVLYAKDIDKRIYPASMTKIAT 66
Query: 62 AYVVFSFL-----KEKKAMLTTPITISKNASEYPPSNSTFKK------------GSTMTL 104
A + + +I+ A + S ++
Sbjct: 67 ALFILRKHPDLLNRFITVKQDAIASITPQAKKQSGYRSPPHWLETDGVTIQLQNKEEVSG 126
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ L++ SAND A +A + + +F++ +N+ K +G + THF N HG+ HY
Sbjct: 127 WDLFHALLICSANDAANTLAMACSGSVSEFMKQLNSFLKEIGCADTHFNNPHGLHHPNHY 186
Query: 165 TTARDMAILSWRIKTDF-------PQYMHYFQIKGLEIKGKKYPNT---NWAVGTFLGAD 214
TTARD+ + + + + N + + A
Sbjct: 187 TTARDLTSIMREGLKEPLFRQVIRTTNYKMAATNLSQERVLNLTNKLILPGSTYYYPPAL 246
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G KTG T +G N+V +A + +S+I + G + +L F R+ +
Sbjct: 247 GGKTGTTKDAGKNLVFAAKKHGRSIITIAAGYPTMGELYEDVIALCEGVFNEPVLRRYLI 306
Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH-------FIDFEKIT 327
+ + + + +V + Y+ E ++ + +K
Sbjct: 307 PPTEKYTLR------LGLLGKVSIPLPNGVYYDFYASEGEELRTICFVPHATKFPIQKGD 360
Query: 328 LLK 330
LL
Sbjct: 361 LLG 363
>gi|17546328|ref|NP_519730.1| D-alanyl-D-alanine-endopeptidase (penicillin-binding protein)
[Ralstonia solanacearum GMI1000]
gi|17428625|emb|CAD15311.1| putative d-alanyl-d-alanine-endopeptidase (penicillin-binding
protein) [Ralstonia solanacearum GMI1000]
Length = 375
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 6/247 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + ++D +G V+ + AS+TKLMTA VV + +L
Sbjct: 93 ATPDALALRSSVALVMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDAHQPMDELLEI 152
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ + S + G+ +T ++ L L ++ S N A A+ S FV M
Sbjct: 153 TE---DDRDFERNTGSRLRYGTMLTREDLLLLALMSSENRAASALGRSYPGGRPAFVAAM 209
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + LG++ TH+++++G+ + I+ K + + G+
Sbjct: 210 NRKAHELGMTDTHYVDSNGLSSSNVSSAMDLAKIVMAAYKVPLIRQFTTTAEHTVNANGR 269
Query: 199 KYP--NTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
NTN V G KTGF +G +V A ++++ V L + TR
Sbjct: 270 TLHYVNTNRLVRGGEWDIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTRFAD 329
Query: 256 SASLLSM 262
+ + +
Sbjct: 330 AVRVRNW 336
>gi|171466626|gb|ACB46501.1| D-ala, D-ala carboxypeptidase [Actinomadura kijaniata]
Length = 309
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 11/260 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK-EKKA 74
+ LLD V P S+TK+MTAYVV ++K
Sbjct: 30 AVSAKAGPSGVYAKSALLLDVGAKKVRWSRSPHTKRRIGSITKVMTAYVVIKSGNLDRKI 89
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ + S++ G +T+ L+ L++ S D A +A++ K F
Sbjct: 90 TVQRKHVDYLRGNGAGGSSAGLVVGDRLTVRQLLRALMLPSGCDAAYVLADAYGPGWKGF 149
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH-------Y 187
V MN T++ L ++ T + N G+ G + + Y
Sbjct: 150 VAKMNKTARGLKMTNTKYANFDGIDWKGATMYSTAYDQTRLAAAAMKLKEFRSVVGTRSY 209
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ NTN +G + G G+KTGFT +G + + A +G + L+ ++L +
Sbjct: 210 RVPPTSTTHIYNWTNTNALLGKYKGMTGVKTGFTNMAGASFMFGAKRGGRELVGIVLNSG 269
Query: 248 D---RNTRNKVSASLLSMGF 264
++ R ++ +L+ GF
Sbjct: 270 SGSYKSRRFTDASKILNWGF 289
>gi|262201714|ref|YP_003272922.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia
bronchialis DSM 43247]
gi|262085061|gb|ACY21029.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia
bronchialis DSM 43247]
Length = 411
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 49/281 (17%), Positives = 95/281 (33%), Gaps = 25/281 (8%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
I + + + D ++GHVIA P + PAS K++ A V L
Sbjct: 81 SAGPIPQRLTSAAWLIADVDSGHVIAAKDPHGRYRPASTIKVLLALVALR-----DLHLD 135
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ + + G T + L L++ S ND A A++ + +
Sbjct: 136 DVVEPTVEDWSTEGDSCGMGPGGHYTTRDLLTGLLMVSGNDCANALSR-SLGGTEATLAK 194
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN + +LG T + G+ G T+ DMA+ D + ++
Sbjct: 195 MNELAASLGAHDTRAASPSGLDAAGMSTSPYDMALFFRAALRD-NTFRELIGLRTFRFPD 253
Query: 198 K----------------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
Y + + + + G G KTG+T + V + + ++++
Sbjct: 254 YPPRADVPGDKPHPAYDMYTSNHLLLEDYPGMIGGKTGYTDDALKTFVGAVHRDGRTIMV 313
Query: 242 VILGALD--RNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
V + L + + S+ GF + + +
Sbjct: 314 VQMYGLSVAGDMYWDQAKSMFDYGFRSARTVSVGSLVDPTP 354
>gi|229090329|ref|ZP_04221573.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
gi|228693023|gb|EEL46740.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
Length = 406
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 71/299 (23%), Positives = 125/299 (41%), Gaps = 15/299 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ T +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 17 APPKEGPNVFSQFATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTK-----PE 71
Query: 78 TPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + + F
Sbjct: 72 DQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVENFA 131
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K +
Sbjct: 132 NMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITR-GVQKYPEILQAMNTKRTTV 190
Query: 196 KGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 191 TTSRQTVSIFNKSTYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRPEI 249
Query: 253 NKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F + ++ K Y + S E+ + E N T
Sbjct: 250 YEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEGKNVKT 308
>gi|73663386|ref|YP_302167.1| penicillin binding protein 4 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495901|dbj|BAE19222.1| penicillin binding protein 4 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 431
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 77/365 (21%), Positives = 145/365 (39%), Gaps = 50/365 (13%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNKLPYYT------LLDT----------NTGHVIA 43
MR+F++ II + + I + AE+ + D+ TG ++
Sbjct: 1 MRKFILTIITVLFVGTIITPFAQAESITPTQAANQYGYNVTDSYQPEGAINVSQTGQLLY 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
+ + W PAS+TKLMT Y+ + + L + I+ SN+ G
Sbjct: 61 QYNINKTWYPASMTKLMTMYLTLEAVNKGDLSLNDKVKITDEHYRMSTLPELSNTKLYPG 120
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
T T+ L++ + S+N A+ +A+ + F MN+ +K+LG+ THF+N G
Sbjct: 121 ETYTIKELLQITVSNSSNAAALILAKEVSGNLSDFTDKMNSKAKSLGMKDTHFVNPTGAE 180
Query: 160 Q--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
+ +TA+D ILS D P+ + + + G Y N
Sbjct: 181 NKQLKDFAPKKYKNEDNNTSTAKDFGILSQHAVQDTPKILDFTKQLAPTQHGVTYYTFNH 240
Query: 206 A----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKV 255
+ + G DG+KTG + + +N + + + VI+GA D RN +
Sbjct: 241 SLEGADMSLEGTDGLKTGSSDIADYNHTITTKRDGFRINQVIMGAGDYKNLGGEKQRNMI 300
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
L++M F K ++ Q ++ + + +++ + + N +D
Sbjct: 301 GNGLMNMSFDQYKYTKILSKGE-----QKINGKTYFVEKDLYDVLPKDFDKNDYKVVIED 355
Query: 316 KESHF 320
++H
Sbjct: 356 DKAHI 360
>gi|262370174|ref|ZP_06063501.1| D-alanyl-D-alanine endopeptidase [Acinetobacter johnsonii SH046]
gi|262315213|gb|EEY96253.1| D-alanyl-D-alanine endopeptidase [Acinetobacter johnsonii SH046]
Length = 351
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 8/252 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
S + ++D NTG V+ + AS+TKLMTA V+ +
Sbjct: 96 TSKYSNQPSVNARAALVMDGNTGEVLYSKNSNTALPIASITKLMTAVVISDARLNMSENI 155
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T + S S+S+ + G +M AL ++KS N A A+A + FV
Sbjct: 156 -TLQQADFSCSGCKSSSSSLRAGDSMNRAEALLFALMKSENPAASALARTYPGGRSAFVS 214
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN +K+LG+++TH+M + G+ G+ +ARD+ IL + + + +
Sbjct: 215 AMNAKAKSLGMNSTHYMESTGL-HPGNIASARDLGIL-VNAASQYGLIRQFSTTASYDFN 272
Query: 197 GK----KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
K NTN V + KTGF +G +V ++ + V+LGA
Sbjct: 273 LGYRVLKSNNTNALVRNGGWNINISKTGFINEAGRCVVMHTTLNNRPAVVVLLGADSSAA 332
Query: 252 RNKVSASLLSMG 263
R + L++
Sbjct: 333 RTNDATRLMNWA 344
>gi|271500976|ref|YP_003334001.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya
dadantii Ech586]
gi|270344531|gb|ACZ77296.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya
dadantii Ech586]
Length = 319
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 56/265 (21%), Positives = 97/265 (36%), Gaps = 13/265 (4%)
Query: 7 IIAMAMLSNIFPFLSIAE---TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ A P A ++D V+ + PD AS+TKLMTA
Sbjct: 19 VCFAAQAVAKTPVTQHAPSRQEIASGSAMVVDMRNNEVLYSSNPDVVVPIASVTKLMTAM 78
Query: 64 VVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + L I++ + E S + GS ++ + L L ++ S N A +
Sbjct: 79 VVLDANQP----LDELISVDISHTKEMQGVYSRVRLGSEISRHDMLLLALMSSENRAAAS 134
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A + F+ MN +++LG+ T+++ G+ T +L +
Sbjct: 135 LAHHYRGGYQAFITAMNAKARSLGMMHTYYVEPTGLSTSNVSTARDLTKLLIASKQYPLL 194
Query: 183 QYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQ 237
+ K Y NTN + KTGFT +G +V + G +
Sbjct: 195 SQLSTTHEKTAVFTHPSYTLPFRNTNHLIYRPDWNIQLTKTGFTNQAGHCLVMRTVIGGR 254
Query: 238 SLIAVILGALDRNTRNKVSASLLSM 262
+ V+L A + T + L +
Sbjct: 255 PVSLVVLDAFGKFTHFADANRLRNW 279
>gi|228984448|ref|ZP_04144626.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229154942|ref|ZP_04283056.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
gi|228628500|gb|EEK85213.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
gi|228775314|gb|EEM23702.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 407
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 75/327 (22%), Positives = 133/327 (40%), Gaps = 17/327 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + T +D TG V+ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPKEGPNVFSQFATTIDAKTGDVLYDKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 131 FANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPFDMAMITR-GVQKYPEILQAMNTKRT 189
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 190 TVTTSRQTVSIFNKSTYFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 248
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E N
Sbjct: 249 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKATYLNKDIDSELEKSAELMLKKDEGKNVR 308
Query: 308 TQMKEAKDKESHFIDFEKITLLKNKIT 334
T + A + + K +
Sbjct: 309 TTFRAASLDKDSL--YHKGIHRGEVVG 333
>gi|169343528|ref|ZP_02864527.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens C str. JGS1495]
gi|169298088|gb|EDS80178.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
perfringens C str. JGS1495]
Length = 423
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 69/349 (19%), Positives = 127/349 (36%), Gaps = 34/349 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++ L I +A+ ++F + Y LD TG +I D P
Sbjct: 6 KKLLSSILIALSVSLFTPIKATVQAAEISQPNIVGKYAVTLDYETGEIIYAKGIDEKAYP 65
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TK+MT+ + + + T ++ S G M ++ +K L++
Sbjct: 66 ASTTKVMTSLLFAEHASKNDSFPYTADAKAQQPYTLNNSFGPIPVGEGMNANDLMKALLM 125
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND A IA+ + + +KF MNN K LGL THF+ +G+ HY+TA D+A++
Sbjct: 126 FSANDAAAVIADGVAGSAEKFSVMMNNEVKKLGLKNTHFVTPNGLHNDDHYSTAYDLAVI 185
Query: 174 SWRIKTDFPQYMHY---FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ + K N N +G G G KTGFT +G +V+
Sbjct: 186 LQNAYKNPWVSETMALKDSDITVNGKKVLLENRNKELGIN-GNIGGKTGFTTPAGRCLVS 244
Query: 231 SAIQGDQSLIAVILGAL---DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
+ + +I +L + ++ + + + + +
Sbjct: 245 VYERNGRKIIGAVLNSQYDAKDEIVFNDMNKIIDYSY---------SVDKVPYIKAGTTI 295
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + ++ + ++ I KN + +K
Sbjct: 296 DTIPVEYKLFRWFGPTKKIDVPFVATEN----------IDYYKNYVNEK 334
>gi|145599789|ref|YP_001163865.1| D-alanyl-D-alanine endopeptidase [Yersinia pestis Pestoides F]
gi|186894625|ref|YP_001871737.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis
PB1/+]
gi|108776609|gb|ABG19128.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Yersinia pestis Nepal516]
gi|108778797|gb|ABG12855.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Yersinia pestis Antiqua]
gi|145211485|gb|ABP40892.1| penicillin-binding protein 7 precursor [Yersinia pestis Pestoides
F]
gi|186697651|gb|ACC88280.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
pseudotuberculosis PB1/+]
Length = 323
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 65/262 (24%), Positives = 109/262 (41%), Gaps = 12/262 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A+A S + + ++D T VI N D AS+TKLMTA VV
Sbjct: 36 LAIARGSAVEVKGTAPLELASGSAMVVDLQTNKVIYANNADKVVPIASITKLMTAMVVLD 95
Query: 68 FLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
K L +++ + ++ S + S ++ + L L ++ S N A ++A
Sbjct: 96 A----KLPLDEILSVDIDQTKELKGVFSRVRVNSEISRKDMLLLTLMSSENRAAASLAHH 151
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YM 185
F++ MN +K+LG+++TH++ G+ + +TARD+A L K +
Sbjct: 152 YPGGYNAFIKAMNAKAKSLGMNSTHYVEPTGL-SINNVSTARDLAKLLMATKQYPLIGQL 210
Query: 186 HYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLI 240
K + Y NTN V KTGFT +G +V + G + +
Sbjct: 211 STTTEKMATFREPNYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVA 270
Query: 241 AVILGALDRNTRNKVSASLLSM 262
V+L A + T + L S
Sbjct: 271 LVVLDAFGKYTHFADANRLRSW 292
>gi|309807067|ref|ZP_07701047.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
LactinV 03V1-b]
gi|312870869|ref|ZP_07730974.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
3008A-a]
gi|308166563|gb|EFO68762.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
LactinV 03V1-b]
gi|311093559|gb|EFQ51898.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
3008A-a]
Length = 385
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 62/344 (18%), Positives = 117/344 (34%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ +K K T + S+
Sbjct: 19 ALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSR 78
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNN 140
A + + ++ L +SAN A+ +A ++ + KKFV M
Sbjct: 79 EAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 138
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 139 QLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLE 198
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L+ K K N N + DG+KTG T A+G + ++ ++
Sbjct: 199 TTRIAKLDFLDGRKTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 257
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ +I VI+GA + R + L + + N + + P
Sbjct: 258 GRRIITVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNRPI 317
Query: 292 ISEEVCTTQKEIINYNT--QMKEAKDKESHFIDFEKITLLKNKI 333
C Q I + ++ + + T + I
Sbjct: 318 NEVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 361
>gi|229132169|ref|ZP_04261027.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
gi|228651316|gb|EEL07293.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
Length = 407
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 77/327 (23%), Positives = 131/327 (40%), Gaps = 17/327 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + T +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPAEGPNVFSQFATTIDAKTGDMLYDKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTFSQLALDQEKSNYQIEFHPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIK 191
F MN +K LG +HF+ +G+ HYTT DMA+++ + + Q M+ +
Sbjct: 131 FANMMNERAKQLGAKDSHFVTPNGLHDPNHYTTPYDMAMITRGVQKYPEILQAMNTKRTT 190
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ G KTGFT + +V + +I V++ A R
Sbjct: 191 VTTSTQTVSIFNKSTYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRPE 249
Query: 252 RNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
+ + F T + ++ K Y + S E+ + E N T
Sbjct: 250 IYEDLKQMAEYSFGQFTKQTVLDKHSWHQKAKYLNKDVDSELEKSAELMLKKDEGKNIKT 309
Query: 309 QMKEAK-DKESHFIDFEKITLLKNKIT 334
+ DKES ++K +
Sbjct: 310 AFRVNSVDKESL---YQKGIHRGEVVG 333
>gi|254522509|ref|ZP_05134564.1| beta-lactamase [Stenotrophomonas sp. SKA14]
gi|219720100|gb|EED38625.1| beta-lactamase [Stenotrophomonas sp. SKA14]
Length = 260
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 79/251 (31%), Positives = 122/251 (48%), Gaps = 10/251 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
LD T VI ++ + PASLTKLMTAY ++ ++E+ +TI+
Sbjct: 6 PERAPLSSITLDAATFAVIHQHNAETARQPASLTKLMTAYAAYACVEERGRAWDEAVTIA 65
Query: 84 KNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
N G T+TL L+ L++ S ND A+AIA L ++ F+ MN
Sbjct: 66 SNDVHAVADDETRMGLVPGETVTLARLLEGLMIVSGNDAALAIARHLDGSQTAFLDRMNR 125
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
++ LGL +T F + G+ H ++ARDMA+L+ + D PQ + +
Sbjct: 126 HARQLGLRSTWFASVSGITTPHHASSARDMAVLAACLLNDHPQILAITAQRAFVHGRFSR 185
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ--GDQ----SLIAVILGALDRNTRNK 254
N N +G G DG+KTG+T A+GF + A+A + + LI V+LG+ R+ R+
Sbjct: 186 NNQNALLGEH-GVDGLKTGYTRAAGFCLAATACRTVPGRAQPVRLITVVLGSESRDARDA 244
Query: 255 VSASLLSMGFY 265
+ LS GF
Sbjct: 245 LVRDQLSAGFA 255
>gi|153954083|ref|YP_001394848.1| DacA3 [Clostridium kluyveri DSM 555]
gi|219854696|ref|YP_002471818.1| hypothetical protein CKR_1353 [Clostridium kluyveri NBRC 12016]
gi|146346964|gb|EDK33500.1| DacA3 [Clostridium kluyveri DSM 555]
gi|219568420|dbj|BAH06404.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 420
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 73/354 (20%), Positives = 147/354 (41%), Gaps = 23/354 (6%)
Query: 1 MRQ------FLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ F++I + + N+ + +D T +I E PD
Sbjct: 1 MKRKNNIILFVLIFTLCLNLNVSAADESSNTLPEIYGTSAITVDMQTNEIIYEKNPDTKI 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS TKL+TA ++ KE + T ++ S + + G T++ N + L
Sbjct: 61 YPASTTKLLTAILLEKNKKETDMLTYTAEAKAQPQSSLNSAARPIEVGDTISAKNVMDAL 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ SAND+A IAE++ K+ +F MN ++L L THF+ +G+ HY+T+ DM+
Sbjct: 121 LMFSANDMACVIAENISKSIPEFADKMNEEVQSLNLKNTHFITPNGLHNPDHYSTSYDMS 180
Query: 172 ILSWRIKTDFPQYMHYFQ----IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
I++ + ++ + + NTN +G G G KTG+T +G
Sbjct: 181 IIAREAFKNSWIRDTIYKSTSTVTTSKGASFAIINTNKLLGK-DGCIGGKTGYTDPAGRC 239
Query: 228 IVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNKTDR-----KKINYIIKD 279
+VA + ++ ++ +++ + + +++ + I+
Sbjct: 240 LVAIYERDNRKILGIVMNSIYDTNDTYVFNDMEKIINWSYSKTPYILHAKDSIIDKKDVK 299
Query: 280 FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
F +N + + T+ + Y+ + + + ++ I I LK +I
Sbjct: 300 FKFLPFTNFEKTVRVPI-KTEDNVSYYDNDINKKELQQKITITTVNIKSLKGEI 352
>gi|331673660|ref|ZP_08374423.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli TA280]
gi|331068933|gb|EGI40325.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli TA280]
Length = 324
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|110806113|ref|YP_689633.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 5 str. 8401]
gi|110615661|gb|ABF04328.1| penicillin-binding protein 7 [Shigella flexneri 5 str. 8401]
Length = 310
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT VI N+PD
Sbjct: 1 MPKFRVALFSLALMLAVPFAPDAVAKTAAVNTASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 61 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|30261380|ref|NP_843757.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Ames]
gi|47526551|ref|YP_017900.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|65318644|ref|ZP_00391603.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A2012]
gi|165870392|ref|ZP_02215047.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0488]
gi|170706252|ref|ZP_02896713.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0389]
gi|227815884|ref|YP_002815893.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. CDC 684]
gi|229603883|ref|YP_002865796.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0248]
gi|254726225|ref|ZP_05188007.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A1055]
gi|254753718|ref|ZP_05205753.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Vollum]
gi|254758814|ref|ZP_05210841.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Australia 94]
gi|30255234|gb|AAP25243.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
Ames]
gi|47501699|gb|AAT30375.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|164713887|gb|EDR19409.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0488]
gi|170128786|gb|EDS97652.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0389]
gi|227004270|gb|ACP14013.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
CDC 684]
gi|229268291|gb|ACQ49928.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0248]
Length = 428
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 72/301 (23%), Positives = 128/301 (42%), Gaps = 15/301 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + T +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 37 VAPPPKEGPNVFSQFATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTK----- 91
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 92 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 151
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 152 FANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITR-GVQKYPEILQAMNTKRT 210
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 211 TVTTSRQTVSIFNKSTYFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 269
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E+ N
Sbjct: 270 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEVKNVK 329
Query: 308 T 308
T
Sbjct: 330 T 330
>gi|170025107|ref|YP_001721612.1| D-alanyl-D-alanine endopeptidase [Yersinia pseudotuberculosis
YPIII]
gi|169751641|gb|ACA69159.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Yersinia
pseudotuberculosis YPIII]
Length = 323
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 66/262 (25%), Positives = 109/262 (41%), Gaps = 12/262 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A+A S + + ++D T VI N D AS+TKLMTA VV
Sbjct: 36 LAIARGSAVEVKGTAPLELASGSAMVVDLQTNKVIYANNADKVVPIASITKLMTAMVVLD 95
Query: 68 FLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
K L +++ + ++ S + S ++ + L L ++ S N A ++A
Sbjct: 96 A----KLPLDEILSVDIDQTKELKGVFSRVRVNSEISRKDMLLLTLMSSENRAAASLAHH 151
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YM 185
F++ MN +K+LG+S+TH++ G+ + +TARD+A L K +
Sbjct: 152 YPGGYNAFIKAMNAKAKSLGMSSTHYVEPTGL-SINNVSTARDLAKLLMATKQYPLIGQL 210
Query: 186 HYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLI 240
K + Y NTN V KTGFT +G +V + G + +
Sbjct: 211 STTTEKMATFREPNYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVIGKRPVA 270
Query: 241 AVILGALDRNTRNKVSASLLSM 262
V+L A + T + L S
Sbjct: 271 LVVLDAFGKYTHFADANRLRSW 292
>gi|297158599|gb|ADI08311.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces bingchenggensis
BCW-1]
Length = 297
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 66/278 (23%), Positives = 117/278 (42%), Gaps = 22/278 (7%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++ L+ + T +++ TG + D + S TK+MTA VV +
Sbjct: 23 LSAGALAPVQAATVATPTITAKGGFVMNNGTGKALYTKAADTRLSTGSTTKIMTARVVLA 82
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFK-----KGSTMTLDNALKLLIVKSANDIAVA 122
L +T+ K S+Y N+ G +T+ L L++ S D A A
Sbjct: 83 QP---NLNLDAKVTVQKAYSDYIVDNNWASSAKLIVGDKVTVRQLLYGLMLPSGCDAAYA 139
Query: 123 IAESLCKTEKKFVQ------HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD------- 169
+A+ + + MN+T+K+LGL+ THF + G+ +Y+T RD
Sbjct: 140 LADKFGTGSTRAARVKSFIGKMNSTAKSLGLTNTHFDSFDGIGHGANYSTPRDLTKLASS 199
Query: 170 -MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
M ++R K + + NTN +GT+ GA G+KTG + + +
Sbjct: 200 AMKYSTFRTVVKTKSTKQKVTTKSGGYRYMDWTNTNPLLGTYSGAIGVKTGSGPEAKYCL 259
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
V +A + +++I +L + + R + LL+ GF
Sbjct: 260 VFAATRNSKTVIGTVLASSSVDNRTADAKKLLNYGFAK 297
>gi|42526491|ref|NP_971589.1| penicillin binding protein [Treponema denticola ATCC 35405]
gi|41816684|gb|AAS11470.1| penicillin binding protein [Treponema denticola ATCC 35405]
Length = 478
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 84/357 (23%), Positives = 140/357 (39%), Gaps = 33/357 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
FL + + + Y L+ NTG ++AE+ D PASLTKL+T Y
Sbjct: 76 FLPVKSSSSNIAPSAKKIELPKIDAESYILIHANTGTILAESNADKIIPPASLTKLVTIY 135
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYP----PSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ + K L + + A + + +++++ ++ + V S ND
Sbjct: 136 TMLQKPQFK--DLEKVVFPPEEAWAIFLPKGAAWMGLGENQSLSIEELIRGMAVCSGNDA 193
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+A A + +KF MN K +GL +T F ++ G+ + TTARD A+ S
Sbjct: 194 ALAAALLTEGSIEKFTLKMNEAVKTMGLKSTRFEDSSGL-SEKNQTTARDFALFSLHYLK 252
Query: 180 DFPQYMHYFQ-----IKGLEIKGKKYPN------------TNWAVGTFLGADGMKTGFTC 222
+P+ + F + N TN + G DG+KTGF
Sbjct: 253 QYPENLKKFHSVNEISYPQKHNILIKKNSDGLKDFQIKPATNTLLKKIEGCDGLKTGFIY 312
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRN------TRNKVSASLLSMGFYNKTDRKKINYI 276
SGFNI +A + + IAVILG +N R + S L++ F N +
Sbjct: 313 ESGFNISLTAQKNGERFIAVILGGHGKNFTEGIFKREQNSIKLMNFAFDNFKSFDIREHN 372
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
LS+ + + + + K+ E H E++ +L + I
Sbjct: 373 KIKRSVSVLSSNLNVKTSAFMPLLADEDFSQDYLTVFKNDERH---IEQVIILPDVI 426
>gi|47566159|ref|ZP_00237187.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
G9241]
gi|47556712|gb|EAL15043.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
G9241]
Length = 428
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 78/354 (22%), Positives = 140/354 (39%), Gaps = 32/354 (9%)
Query: 4 FLVIIAMAMLS---------------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD 48
F +I + +L+ + P + T +D TG V+ +
Sbjct: 10 FTTVICLFLLTPMTLRAETNIGVNPEQVAPPPKEGPNVFSQFATTIDAKTGDVLYDKNAH 69
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDN 106
H PAS+TK++TA ++ K T S+ A + SN F+ G T+ +
Sbjct: 70 HRAFPASMTKVLTAILLMEHTK-----PEDQFTFSQLALDQEKSNYQIEFQPGETINRNT 124
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
AL +L+V SAND++ AIAE + + + F MN +K LG + +HF+ +G+ HYTT
Sbjct: 125 ALMILMVLSANDVSYAIAERIGGSVENFANMMNERAKQLGATDSHFVTPNGLHDPNHYTT 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---LGADGMKTGFTCA 223
DMA+++ +P+ + K + + + + T+ + G KTGFT
Sbjct: 185 PFDMAMITR-GVQKYPEILQAMNTKRTTVTTSRQTVSIFNKSTYFENPFSIGGKTGFTNE 243
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY---IIKDF 280
+ +V + +I V++ A R + + F + ++ K
Sbjct: 244 ARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDLKQMADYSFGQFVKQTVLDKHSWHQKAT 302
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
Y + S E+ + E N T + A + + K +
Sbjct: 303 YLNKDIDSELEKSAELMLKKDEGKNVRTTFRAASLDKDSL--YHKGIHRGEVVG 354
>gi|183981810|ref|YP_001850101.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium marinum M]
gi|183175136|gb|ACC40246.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium marinum M]
Length = 290
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 54/250 (21%), Positives = 93/250 (37%), Gaps = 14/250 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + D +TG V+A + PAS K++ A V L + +
Sbjct: 37 PDGPAQTWIVADLDTGQVLAGRDQNVTHPPASTIKVLLALVALDE-----LDLNSTVVAD 91
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + + K G T T L L++ S ND A +A+ + + V MN +
Sbjct: 92 EADTHVECNCVGVKAGHTYTARQLLDGLLLVSGNDAANTLAQ-MLGGQDAAVAKMNAKAA 150
Query: 144 NLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDF---PQYMHYFQIKGLEIKGK 198
LG TH G+ G ++TA D+A++ + + E
Sbjct: 151 ALGAMNTHAATPSGLDGPGGSGWSTAHDLAVIFRTAMANPVFAHITAEPSAMFPGEDGEH 210
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKV 255
N + + + GA G KTG+T A+ V +A + + L+ ++ T
Sbjct: 211 PIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARNGRRLVIAMMYGLVKEGGPTYWDQ 270
Query: 256 SASLLSMGFY 265
+ SL GF
Sbjct: 271 AGSLFDWGFA 280
>gi|123443099|ref|YP_001007073.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090060|emb|CAL12923.1| penicillin-binding protein 7 precursor [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 311
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 57/247 (23%), Positives = 93/247 (37%), Gaps = 10/247 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
++D T VI N D AS+TKLMTA VV K L I+
Sbjct: 38 APLELASGSAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLDA----KLPLDEIIS 93
Query: 82 IS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ E S + S ++ + L L ++ S N A ++A F++ MN
Sbjct: 94 VDIHQTKEMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNA 153
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+K+LG++ T ++ G+ + T +L + + K + Y
Sbjct: 154 KAKSLGMTKTRYVEPTGLSINNVSTARDLTKLLIATKQYPLIGQLSTTTEKMATFREPNY 213
Query: 201 ----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
NTN V KTGFT +G + + G++ + V+L A + T
Sbjct: 214 TLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYTHFAD 273
Query: 256 SASLLSM 262
+ L S
Sbjct: 274 ANRLRSW 280
>gi|203284509|ref|YP_002222249.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia duttonii Ly]
gi|203288043|ref|YP_002223058.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia recurrentis A1]
gi|201083952|gb|ACH93543.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia duttonii Ly]
gi|201085263|gb|ACH94837.1| serine-type D-Ala-D-Ala carboxypeptidase [Borrelia recurrentis A1]
Length = 333
Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats.
Identities = 83/300 (27%), Positives = 127/300 (42%), Gaps = 32/300 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE------TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M+ +I++M +L N + SI LLD +T V+ P+ + PA
Sbjct: 27 MKIIFIIMSMFLLFNAYKLFSITLLQIEKVVLDAKSVVLLDCDTKCVLYSKNPNLVFPPA 86
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITI----SKNASEYPPSNSTFKKGSTMTLDNALKL 110
SLTKL+T Y K++ L + I S S ++G +T + LK
Sbjct: 87 SLTKLVTIYTALVEAKKQNIDLNAIVPISSSASYYNLPLDSSLMFLEEGHKVTFEELLKG 146
Query: 111 LIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
L+V S ND A+AIAE + + FV MN+ L L T F++ G + TA +
Sbjct: 147 LVVSSGNDAAIAIAEFIVGKDLNNFVNLMNDNVFKLKLINTSFVDTSG-YSKNNKITALE 205
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGK--------------KYPNTNWAVGTFLGADG 215
MA+ + +F + +K K N N + + ADG
Sbjct: 206 MALFAKTYIDEFEFMLKIHSLKDFIYPKPENLGSTSSSKMLNLKQDNKNILILNYPYADG 265
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGAL------DRNTRNKVSASLLSMGFYNKTD 269
+KTG+ SG N+VA+A + D LIAVILG R+ ++ L GF + +
Sbjct: 266 LKTGYIKTSGLNLVATAKKDDIRLIAVILGVSKGVDNIGEKKRSLIAQKLFEYGFDHYSK 325
>gi|251790099|ref|YP_003004820.1| D-alanyl-D-alanine endopeptidase [Dickeya zeae Ech1591]
gi|247538720|gb|ACT07341.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya zeae
Ech1591]
Length = 319
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 53/254 (20%), Positives = 95/254 (37%), Gaps = 8/254 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+++ + ++D V+ + PD AS+TKLMTA VV +
Sbjct: 29 TSVTQPAPSRQEIASGSAMVVDLRNNDVLYSSNPDVVVPIASVTKLMTAMVVLDANQPLD 88
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
L+ I+ +K S + GS ++ + L L ++ S N A ++A +
Sbjct: 89 ERLSVDISQTKE---MQGVYSRVRLGSEISRHDMLLLALMSSENRAAASLAHHYRGGYQA 145
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F+ MN +K LG++ T ++ G+ T +L + + K
Sbjct: 146 FIAAMNAKAKALGMTHTRYVEPTGLSTSNVSTARDLTKLLIASKQYPLLGQLSTSHEKTA 205
Query: 194 EIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
Y NTN + KTGFT +G +V + + + V+L A
Sbjct: 206 VFTQPSYSLPFRNTNHLIYRQDWNIQLTKTGFTNQAGHCLVMRTVINGRPVSLVVLDAFG 265
Query: 249 RNTRNKVSASLLSM 262
+ T + L +
Sbjct: 266 KFTHFADANRLRNW 279
>gi|157144931|ref|YP_001452250.1| D-alanyl-D-alanine endopeptidase [Citrobacter koseri ATCC BAA-895]
gi|157082136|gb|ABV11814.1| hypothetical protein CKO_00660 [Citrobacter koseri ATCC BAA-895]
Length = 311
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 105/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS------------IAETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF ++D NT VI N+PD
Sbjct: 1 MLKFRVSLFSLALMLAVPFAPHAVAKTAAAAVASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV L I+ + S + S ++ N L
Sbjct: 61 LVRPIASITKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKNML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A F++ MN +K LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGL-SIHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIASKQYPLIGQLSTTREDMATFANPAYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTMINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|126348215|emb|CAJ89936.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
ambofaciens ATCC 23877]
Length = 368
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 49/260 (18%), Positives = 92/260 (35%), Gaps = 15/260 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P + + D ++G V+A + PAS K + A V L +
Sbjct: 40 PGAPGVPDVSALSWVVADADSGDVLAAHDAHRRLPPASTLKTLFALTVLPVLPGG---IR 96
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ + P S+ + L + ++ + AV + SL
Sbjct: 97 HEVRGDELNGIGPGSSLVGIVEGHTYRVSDLWNGVFLNSGNDAVHVLASLTGGWDATAAR 156
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI----KGL 193
M ++ LG TH + G G ++A D+A+ + + ++ G
Sbjct: 157 MQAEARALGARDTHVRSPDGYDAPGQVSSAYDLAVFGRAGLRNPDFARYCAKVDAMFPGR 216
Query: 194 EIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
NTN V + G G+K G+T +G +VA+A + ++L+ ++
Sbjct: 217 NGDAYGIRNTNRLLTGEDGVEPYPGLIGIKNGYTSNAGNTLVAAARRDGRTLVVTVMNPQ 276
Query: 248 --DRNTRNKVSASLLSMGFY 265
+ + + SLL GF
Sbjct: 277 EGGGHAVYEEARSLLDWGFE 296
>gi|309808134|ref|ZP_07702046.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
LactinV 01V1-a]
gi|308168603|gb|EFO70709.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
LactinV 01V1-a]
Length = 425
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 114/344 (33%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ +K K T + S+
Sbjct: 59 ALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSR 118
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNN 140
A + + ++ L +SAN A+ +A ++ + KKFV M
Sbjct: 119 EAIAVSKNPEYSNVPLKLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 178
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 179 QLLDWHISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKHLLLEFPQVLD 238
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L K N N + DG+KTG T A+G + ++ ++
Sbjct: 239 TTRISKLNFPDGRNTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 297
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ ++ VI+GA R + L + + N + + P
Sbjct: 298 GRRIVTVIIGARHLNGSDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKSSPI 357
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKE--SHFIDFEKITLLKNKI 333
C Q I + K + + + T + I
Sbjct: 358 NEVRACLYQDTGIWISKDQKLDAELSMNKMPMPIKVGTNIGKLI 401
>gi|297201894|ref|ZP_06919291.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
29083]
gi|297147997|gb|EDY56767.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
29083]
Length = 463
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 46/292 (15%), Positives = 93/292 (31%), Gaps = 34/292 (11%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFLKEK 72
+ + + + D +G V+A + PAS K++ T F+ +
Sbjct: 100 ASGVPVLPKDITARSWIVTDAESGDVLAAHNAHWRLPPASTMKMLFADTLLPKFAKAETH 159
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
K + + + +S + L L+ AV + ++ K
Sbjct: 160 KVVPSDLAGMGAGSSLVGIKEGETYTVHDLWLGVFLRSGND------AVHVLSAMNKGVA 213
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
K V MN ++ L TH ++ G G ++A D+ + + + Y
Sbjct: 214 KTVTEMNEHAEELQALDTHVVSPDGYDAPGQVSSAYDLTLFARSGLQK-KDFREYCSTVT 272
Query: 193 LEI--------------KGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASA 232
+ K + NTN + + G G+K G T +G A
Sbjct: 273 AKFPGETEKDKKGKAVRKPFEIQNTNRLLSGDYDISQYQGIAGVKNGNTTNAGATFTGVA 332
Query: 233 IQGDQSLIAVILGALDRNTR---NKVSASLLSMGFYNKTDRKKINYIIKDFY 281
+ + L+ ++ + K +A L GF + + ++
Sbjct: 333 ERNGRVLLVTVMN-PSKEEHNEVYKETAKLFDWGFKAAGKVQPVGELVPPKG 383
>gi|194367412|ref|YP_002030022.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas
maltophilia R551-3]
gi|194350216|gb|ACF53339.1| Serine-type D-Ala-D-Ala carboxypeptidase [Stenotrophomonas
maltophilia R551-3]
Length = 298
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 72/254 (28%), Positives = 119/254 (46%), Gaps = 10/254 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + ++ +T VI ++ PASLTKLMTAY ++ L+E
Sbjct: 29 AAFPYSPPDMPAPPTALSSITIEASTFEVIHQDNAGVARQPASLTKLMTAYAAYACLEEG 88
Query: 73 KAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+TI+ G ++L L+ L++ S ND A+AIA L
Sbjct: 89 GRTWDEAVTIAAEDVHVVADDETRMGLVPGEKVSLARLLEGLMIVSGNDAALAIARHLDG 148
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
++ F+ MN ++ LGL +T F + G+ H ++ARDMA+L+ + D PQ +
Sbjct: 149 SQSAFLDRMNQHARQLGLRSTWFASVSGITTPHHASSARDMAVLAACLLNDHPQILAVTA 208
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ--GDQ----SLIAVI 243
+ N N +G G DG+KTG+T A+GF + A+A Q + LI V+
Sbjct: 209 QRAFAHGSFSRNNQNALLG-DDGVDGLKTGYTQAAGFCLAATACQPVPGRAHPVRLITVV 267
Query: 244 LGALDRNTRNKVSA 257
LG+ R+ R+ ++
Sbjct: 268 LGSDSRDARDALAR 281
>gi|148266151|ref|YP_001232857.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacter uraniireducens
Rf4]
gi|146399651|gb|ABQ28284.1| Serine-type D-Ala-D-Ala carboxypeptidase [Geobacter uraniireducens
Rf4]
Length = 286
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 72/290 (24%), Positives = 122/290 (42%), Gaps = 15/290 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + +A + + Y + G + P ASLTK+MTA
Sbjct: 7 LLATLMLAAGNGGAAEVPDPFPRMASAYLV--QIQGKTVWARRPVRRLPQASLTKIMTAI 64
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V K L +T+S+ A+ S + G L++ L ++V SAND A+
Sbjct: 65 LVLERCK-----LDEVVTVSRRAAGETGSRIGLRVGERFRLEDLLAAMLVASANDACHAL 119
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
A+ L +E++FV MN ++ LGL + F NA G HY+TARD+AIL+ +
Sbjct: 120 ADHLAGSEERFVALMNARARGLGLDNSRFANACGHDAPNHYSTARDLAILAETALKNPAF 179
Query: 184 YMHYFQIK-----GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + N N +G +G G+KTG+T +G +VA A +
Sbjct: 180 GRLVSSKRLKIRTVDRRRAFSLVNRNKLLGRSVGVSGVKTGYTENAGRCLVALAERDGTR 239
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
++ V+L A R + + ++ F + N F ++ ++
Sbjct: 240 VLLVLLNAP---HRFRDAVVMIERAFAVAPPGRFGNRSTAPFSNRSGHHQ 286
>gi|254780698|ref|YP_003065111.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
gi|254040375|gb|ACT57171.1| D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 336
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 85/256 (33%), Positives = 135/256 (52%), Gaps = 5/256 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ +++ M+S + + ++D N + D P PASLTK+MT Y+
Sbjct: 34 ILFLSIIMISMASELHAKPK----YSSIVIDVNKNQMTGFKQ-DEPRYPASLTKMMTLYI 88
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+F +L+ KK L T I +SK A+ PS K+ + T + + LI +SAND++ A
Sbjct: 89 IFEYLQSKKLHLNTQIPVSKTAATQNPSKLYLKEKTYFTTEQGILALITRSANDVSTAFG 148
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
E + +EKKF M+N +K +G+ T + NA G+ TTARD AIL ++ +FPQY
Sbjct: 149 EFISGSEKKFAILMSNKAKKIGMQNTIYKNASGLHDKNQITTARDQAILGILLRKNFPQY 208
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
YF I+ + + N N + DG+KTG+T SGFNIV S D ++AV++
Sbjct: 209 YKYFSIRKFRYRNRIITNHNKLLNKMHNIDGIKTGYTRNSGFNIVTSLRYKDDPIVAVVM 268
Query: 245 GALDRNTRNKVSASLL 260
G R++ + L+
Sbjct: 269 GMPTSQERDQKALELI 284
>gi|94310149|ref|YP_583359.1| murein-DD-endopeptidase [Cupriavidus metallidurans CH34]
gi|93354001|gb|ABF08090.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Cupriavidus
metallidurans CH34]
Length = 393
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 53/282 (18%), Positives = 113/282 (40%), Gaps = 12/282 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
A + ++D NT V+ + P AS+TKLMTA VV + + +T+
Sbjct: 115 ALALRSSVALVMDQNTNEVLFQKNPTAVLPIASITKLMTALVVMDA----RLPMDEMLTV 170
Query: 83 SKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
++ + +S+ + + +T L L ++ S N A A+ + FV MN
Sbjct: 171 TEEDRDTEKHSSSRLRFGTQLTRQEMLLLALMSSENRAASALGRNYPGGLPAFVGAMNRK 230
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKK 199
++ LG+S +HF++++G+ + +++ + + + + +
Sbjct: 231 ARELGMSDSHFVDSNGLSSSNVSSAMDLARLVNAAYRNPTIREYSTQPEHEVTVFGRPMH 290
Query: 200 YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
Y +TN V G KTG+ +G +V D++++ V L ++ + +R +
Sbjct: 291 YVSTNRLVRGGNWDIGLQKTGYISEAGQCLVMQTRVNDRNVVMVFLDSVGKLSRFADATR 350
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
+ S + + + F + P + +Q
Sbjct: 351 VRSW----LEHQPATSAQPRPFPSNPNLTQGPKSPTAILVSQ 388
>gi|325681262|ref|ZP_08160792.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
gi|324107184|gb|EGC01470.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
Length = 468
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 69/385 (17%), Positives = 123/385 (31%), Gaps = 58/385 (15%)
Query: 5 LVIIAMAMLSNIFPFLSIAET--------------NKLPYYTLLDTNTGHVIAENYPDHP 50
L+ ++S+ P ++ +++ +TG I + D
Sbjct: 11 LLCTFAVLVSSALPAGALTFKPTVRDENGELKDLRLYSECVYMINMDTGEEIVDINSDKE 70
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPIT-----ISKNASEYPPSNSTFKKGSTMTLD 105
PASLTKLMTA V+ L + L S + + +++
Sbjct: 71 VPPASLTKLMTAVVMLDELGGDEDALKAKKMSAGTEAFDELYGTGASTADIQPYESVSAY 130
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ L ++ SA + + IA ++ +FV MN LGL THF AHG+ +++
Sbjct: 131 DLLAANLIPSACEASNIIAVNVGGNIPRFVDMMNEKVTELGLKHTHFSCAHGLFTQQNFS 190
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN------------TNWAVGTFLGA 213
+A+D+A + ++P + ++ + + +
Sbjct: 191 SAKDIAKICEYALDNYPVFKELVNTTFYTMEPTDFHPEGTSLTSTDFMINEYTDYYYSYC 250
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---------------------- 251
G+KTG T A+G + A + + V LGA
Sbjct: 251 RGIKTGTTEAAGRCFASYATCDGATYLTVTLGAPMEKQPEDIKKGEEDPDSLYAAEDVYY 310
Query: 252 RNKVSASLLSMGFYNKTDRKKINYI-----IKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
+L F + IN I +K Y + L + I
Sbjct: 311 NFIDHINLYEWAFSTMVQKDFINEISEVRDVKVEYGKKLDYANLKPACGYSRMWPANIKV 370
Query: 307 NTQMKEAKDKESHFIDFEKITLLKN 331
K K+ EK +L
Sbjct: 371 EEVEKIVTVKDHIVAPVEKGDVLGK 395
>gi|224498349|ref|ZP_03666698.1| hypothetical protein LmonF1_01100 [Listeria monocytogenes Finland
1988]
Length = 269
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 66/243 (27%), Positives = 113/243 (46%), Gaps = 6/243 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G ++ E D ASLTKLMTA++V + KK + + +
Sbjct: 29 LSAQSAAVFSVENGKMLYEKNADKVMPIASLTKLMTAFLVLEAVDNKKLSWDEQLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++V SAND A + F Q MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLVMSANDAAETLG--DRLEGASFPQKMNNEAKKL 146
Query: 146 GLSA-THFMNAHGVVQHGHY--TTARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKKYP 201
GLS T F++A G+ G +T +D+ +LS ++ + + + + +G K
Sbjct: 147 GLSNKTKFVSASGLDVDGEMAVSTTKDLFLLSSKLISTHSEVLETTSKSSIITEEGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN +G G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDLIGAIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDADTAEKRFKDTEQLMK 266
Query: 262 MGF 264
+GF
Sbjct: 267 VGF 269
>gi|49184208|ref|YP_027460.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Sterne]
gi|49178135|gb|AAT53511.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Sterne]
Length = 434
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 72/301 (23%), Positives = 128/301 (42%), Gaps = 15/301 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + T +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 43 VAPPPKEGPNVFSQFATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTK----- 97
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 98 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 157
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 158 FANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITR-GVQKYPEILQAMNTKRT 216
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 217 TVTTSRQTVSIFNKSTYFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 275
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E+ N
Sbjct: 276 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEVKNVK 335
Query: 308 T 308
T
Sbjct: 336 T 336
>gi|215447643|ref|ZP_03434395.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85]
gi|289759480|ref|ZP_06518858.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85]
gi|289715044|gb|EFD79056.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T85]
Length = 405
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 55/259 (21%), Positives = 95/259 (36%), Gaps = 12/259 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + D ++G VIA P PAS+ K++ A
Sbjct: 79 IITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAM-----ASIN 133
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + + + + G T T++ L L++ S ND A A+A L
Sbjct: 134 TLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPA 193
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-----YMHY 187
+ +N + LG T G+ G T+A D+ + + +
Sbjct: 194 AL-EKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTF 252
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GA 246
+ G + N N + + GA G KTG+T +G V +A + + L+ V+L G
Sbjct: 253 DFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGT 312
Query: 247 LDRNTRNKVSASLLSMGFY 265
+ +A LL GF
Sbjct: 313 RQPIPPWEQAAHLLDYGFN 331
>gi|308232419|ref|ZP_07415998.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu001]
gi|308371314|ref|ZP_07424530.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu003]
gi|308372505|ref|ZP_07428899.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu004]
gi|308373707|ref|ZP_07433402.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu005]
gi|308376077|ref|ZP_07445998.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu007]
gi|308378277|ref|ZP_07482095.2| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu009]
gi|308213997|gb|EFO73396.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu001]
gi|308329169|gb|EFP18020.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu003]
gi|308333002|gb|EFP21853.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu004]
gi|308336624|gb|EFP25475.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu005]
gi|308344359|gb|EFP33210.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu007]
gi|308353021|gb|EFP41872.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu009]
Length = 392
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 55/259 (21%), Positives = 95/259 (36%), Gaps = 12/259 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + D ++G VIA P PAS+ K++ A
Sbjct: 66 IITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAM-----ASIN 120
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + + + + G T T++ L L++ S ND A A+A L
Sbjct: 121 TLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPA 180
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-----YMHY 187
+ +N + LG T G+ G T+A D+ + + +
Sbjct: 181 AL-EKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTF 239
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GA 246
+ G + N N + + GA G KTG+T +G V +A + + L+ V+L G
Sbjct: 240 DFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGT 299
Query: 247 LDRNTRNKVSASLLSMGFY 265
+ +A LL GF
Sbjct: 300 RQPIPPWEQAAHLLDYGFN 318
>gi|15610466|ref|NP_217847.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis H37Rv]
gi|15842925|ref|NP_337962.1| penicillin-binding protein, putative [Mycobacterium tuberculosis
CDC1551]
gi|31794515|ref|NP_857008.1| penicillin-binding protein DacB1 [Mycobacterium bovis AF2122/97]
gi|121639258|ref|YP_979482.1| putative penicillin-binding protein dacB1 [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148663194|ref|YP_001284717.1| putative penicillin-binding protein DacB1 [Mycobacterium
tuberculosis H37Ra]
gi|148824535|ref|YP_001289289.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis F11]
gi|167967097|ref|ZP_02549374.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis H37Ra]
gi|215405348|ref|ZP_03417529.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
02_1987]
gi|215428820|ref|ZP_03426739.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T92]
gi|215432297|ref|ZP_03430216.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
EAS054]
gi|218755116|ref|ZP_03533912.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis GM
1503]
gi|219559395|ref|ZP_03538471.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T17]
gi|224991755|ref|YP_002646444.1| putative penicillin-binding protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253800375|ref|YP_003033376.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
1435]
gi|254233942|ref|ZP_04927267.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis C]
gi|254365954|ref|ZP_04981999.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis str.
Haarlem]
gi|254552436|ref|ZP_05142883.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260188381|ref|ZP_05765855.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
CPHL_A]
gi|260202603|ref|ZP_05770094.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T46]
gi|260206688|ref|ZP_05774179.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis K85]
gi|289445020|ref|ZP_06434764.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T46]
gi|289449022|ref|ZP_06438766.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
CPHL_A]
gi|289555609|ref|ZP_06444819.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
605]
gi|289571561|ref|ZP_06451788.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T17]
gi|289576056|ref|ZP_06456283.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis K85]
gi|289747151|ref|ZP_06506529.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis
02_1987]
gi|289752030|ref|ZP_06511408.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T92]
gi|289755456|ref|ZP_06514834.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis
EAS054]
gi|289763521|ref|ZP_06522899.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis GM
1503]
gi|294995903|ref|ZP_06801594.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis 210]
gi|297635986|ref|ZP_06953766.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis KZN
4207]
gi|297732983|ref|ZP_06962101.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis KZN
R506]
gi|313660315|ref|ZP_07817195.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis KZN
V2475]
gi|2894240|emb|CAA17102.1| PROBABLE PENICILLIN-BINDING PROTEIN DACB1 (D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE)
(PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA
CARBOXYPEPTIDASE) (D-AMINO ACID HYDROLASE)
[Mycobacterium tuberculosis H37Rv]
gi|13883259|gb|AAK47776.1| penicillin-binding protein, putative [Mycobacterium tuberculosis
CDC1551]
gi|31620111|emb|CAD95475.1| PROBABLE PENICILLIN-BINDING PROTEIN DACB1 (D-ALANYL-D-ALANINE
CARBOXYPEPTIDASE) (DD-PEPTIDASE) (DD-CARBOXYPEPTIDASE)
(PBP) (DD-TRANSPEPTIDASE) (SERINE-TYPE D-ALA-D-ALA
CARBOXYPEPTIDASE) [Mycobacterium bovis AF2122/97]
gi|121494906|emb|CAL73389.1| Probable penicillin-binding protein dacB1 [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|124599471|gb|EAY58575.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis C]
gi|134151467|gb|EBA43512.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis str.
Haarlem]
gi|148507346|gb|ABQ75155.1| putative penicillin-binding protein DacB1 [Mycobacterium
tuberculosis H37Ra]
gi|148723062|gb|ABR07687.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis F11]
gi|224774870|dbj|BAH27676.1| putative penicillin-binding protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|253321878|gb|ACT26481.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
1435]
gi|289417939|gb|EFD15179.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T46]
gi|289421980|gb|EFD19181.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
CPHL_A]
gi|289440241|gb|EFD22734.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
605]
gi|289540487|gb|EFD45065.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis K85]
gi|289545315|gb|EFD48963.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T17]
gi|289687679|gb|EFD55167.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis
02_1987]
gi|289692617|gb|EFD60046.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis T92]
gi|289696043|gb|EFD63472.1| penicillin-binding protein DacB1 [Mycobacterium tuberculosis
EAS054]
gi|289711027|gb|EFD75043.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis GM
1503]
gi|323718003|gb|EGB27186.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
CDC1551A]
gi|326905171|gb|EGE52104.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis W-148]
gi|328460108|gb|AEB05531.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis KZN
4207]
Length = 405
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 55/259 (21%), Positives = 95/259 (36%), Gaps = 12/259 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + D ++G VIA P PAS+ K++ A
Sbjct: 79 IITAPGSAPAPGDVSAEAWLVADLDSGAVIAARDPHGRHRPASVIKVLVAM-----ASIN 133
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + + + + G T T++ L L++ S ND A A+A L
Sbjct: 134 TLTLNKSVAGTADDAAVEGTKVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPA 193
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-----YMHY 187
+ +N + LG T G+ G T+A D+ + + +
Sbjct: 194 AL-EKINLLAAKLGGRDTRVATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTF 252
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GA 246
+ G + N N + + GA G KTG+T +G V +A + + L+ V+L G
Sbjct: 253 DFPGHGDHPGYELENDNQLLYNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGT 312
Query: 247 LDRNTRNKVSASLLSMGFY 265
+ +A LL GF
Sbjct: 313 RQPIPPWEQAAHLLDYGFN 331
>gi|322385858|ref|ZP_08059501.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus
ATCC 51100]
gi|321270143|gb|EFX53060.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus cristatus
ATCC 51100]
Length = 447
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 76/404 (18%), Positives = 150/404 (37%), Gaps = 73/404 (18%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIA 43
M++ ++ + + + + P + A+ + ++D NTG ++
Sbjct: 1 MKKKFLVFGLILSAFLSPLSAAADELVDMARKMYPNENVQAINRPKSSLMIDGNTGDILW 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
++ D +PAS++K+MT Y+VF +KE K L T I +
Sbjct: 61 QDNIDEVRDPASMSKIMTLYLVFEAIKEGKLSLDTVIKATPQDQAVAGIYEISNNKIVAG 120
Query: 104 LDNALKLLIVKSANDIAVAI-----AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
++ + LI + + A F+ MN ++ LG++ T + NA G
Sbjct: 121 VNYTVSELITMTVVPSSNATTVMLANYLSDNDPDAFLDKMNAKAQELGMTNTKWFNASGA 180
Query: 159 VQH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ TTARD+ IL + ++P ++Y + +K
Sbjct: 181 AAVSFKGYYTPQRYNNYASNQTTARDLGILVYNFVKNYPDILNYTNQAKVTVKAGTPYEE 240
Query: 204 NWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251
+ + G DG+KTG + FN +A+ +G+Q +I VI+G D
Sbjct: 241 TFETYNYSLPGARYALEGVDGLKTGSSPNGAFNYIATVKRGNQRVIGVIMGVGDWADQDG 300
Query: 252 ---RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
R+ +L+ + + +K + +Q + + N+ E+ T K+
Sbjct: 301 EYYRHPFGNALIEKSYADYEYKKLFSKG-----KQEIDGKTYNLPEDFYATIKKDAKVKP 355
Query: 309 QMKEA-----------KDKESHFIDFEKITLL-----KNKITKK 336
++ K S + E++ K ++TKK
Sbjct: 356 AVENGVLKAGNDLYTLSPKISDEMKVEEVDASVTQSAKEEVTKK 399
>gi|118617619|ref|YP_905951.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium ulcerans
Agy99]
gi|118569729|gb|ABL04480.1| D-alanyl-D-alanine carboxypeptidase DacB [Mycobacterium ulcerans
Agy99]
Length = 290
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 55/250 (22%), Positives = 93/250 (37%), Gaps = 14/250 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + D +TG V+A + PAS K++ A V L + +
Sbjct: 37 PDGPAQTWIVADLDTGQVLAGRDQNVTHPPASTIKVLLALVALDE-----LNLNSTVVAD 91
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + + K G T T L L++ S ND A +A+ L + V MN +
Sbjct: 92 EADTHVECNCVGVKAGHTYTARQLLDGLLLVSGNDAANTLAQ-LLGGQDAAVAKMNAKAA 150
Query: 144 NLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDF---PQYMHYFQIKGLEIKGK 198
LG TH G+ G ++TA D+A++ + + E
Sbjct: 151 ALGAMNTHAATPSGLDGPGGSGWSTAHDLAVIFRTAMANPVFAHITAEPSAMFPGEDGEH 210
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKV 255
N + + + GA G KTG+T A+ V +A + + L+ ++ T
Sbjct: 211 PIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARNGRRLVIAMMYGLVKEGGPTYWDQ 270
Query: 256 SASLLSMGFY 265
+ SL GF
Sbjct: 271 AGSLFDWGFA 280
>gi|257064043|ref|YP_003143715.1| D-alanyl-D-alanine carboxypeptidase [Slackia heliotrinireducens DSM
20476]
gi|256791696|gb|ACV22366.1| D-alanyl-D-alanine carboxypeptidase [Slackia heliotrinireducens DSM
20476]
Length = 464
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 71/340 (20%), Positives = 126/340 (37%), Gaps = 37/340 (10%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++ + G V E D AS+TK+MTA V L T +T+S
Sbjct: 73 PDISSECAIVV-GDDGTVYYERNADQQHQIASITKIMTAIVALENAD-----LNTEVTVS 126
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--------KFV 135
K ++ S++ K+G TM L AL L++ S ND +AIAE++ FV
Sbjct: 127 KASATVGESSANLKEGDTMDLRTALMCLLIPSGNDAGIAIAETVGTIMDPSASDPQAVFV 186
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQH----GHYTTARDMAILSWR--------IKTDFPQ 183
MN ++ LG + THF N HG+ +++ARD+ ++
Sbjct: 187 SAMNAKAEELGCTNTHFTNPHGLDADKWGSDMHSSARDVVTMARYAMSYDTFAEIVQMGD 246
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K + + T+ + + G G+KTG + + F +GD++ V+
Sbjct: 247 TTVTVTGKDNKARDNWLDATDDLLEEYEGMRGVKTGSSVLADFCFSGCVTRGDETFYTVV 306
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYI-----------IKDFYQQNLSNEVPNI 292
LG + R + +L+ F + IN + D + N
Sbjct: 307 LGNATSDERFGDTITLMDWAFGSTVHTDFINSDFVISEEDPRPYVADVTLLDWPNRTVKA 366
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ + ++ +++ D EK ++
Sbjct: 367 TVDDEGEVFDLFLPEGDIEQVVSYVRIMGDVEKGDIVGRL 406
>gi|218559053|ref|YP_002391966.1| D-alanyl-D-alanine endopeptidase [Escherichia coli S88]
gi|218365822|emb|CAR03562.1| D-alanyl-D-alanine endopeptidase [Escherichia coli S88]
gi|307626324|gb|ADN70628.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UM146]
Length = 310
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 59/258 (22%), Positives = 103/258 (39%), Gaps = 10/258 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + + ++D NT VI N+PD AS++KLMTA VV
Sbjct: 23 AVAKTVAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARL 82
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L I+ + S + S ++ + L L ++ S N A ++A
Sbjct: 83 PLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGG 139
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYM 185
K F++ MN +K+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 140 YKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTR 198
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ NTN V KTGFT A+G +V + ++ + V++
Sbjct: 199 EDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258
Query: 245 GALDRNTRNKVSASLLSM 262
A + T ++ L +
Sbjct: 259 DAFGKYTHFADASRLRTW 276
>gi|327253261|gb|EGE64915.1| D-alanyl-D-alanine endopeptidase [Escherichia coli STEC_7v]
Length = 310
Score = 127 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT VI N+PD
Sbjct: 1 MPKFRVSLFSLALMLAVPFAPQAVAKTAVATTASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ L
Sbjct: 61 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKEML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|228477390|ref|ZP_04062026.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius
SK126]
gi|228250825|gb|EEK10013.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius
SK126]
Length = 446
Score = 127 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 71/381 (18%), Positives = 140/381 (36%), Gaps = 52/381 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------------KLPYYTLLDTNTGHVIAE 44
M++ L+ + + + P LS A+ + L+D NTG ++ +
Sbjct: 1 MKKKLLGLFLVASLALAPSLSSADQLVDIAQKAGYKEATETYRPKSSLLIDANTGDILWQ 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN-----ASEYPPSNSTFKKG 99
+ D +PAS++K M+ Y+VF L + + T IT +N
Sbjct: 61 DNIDEVRDPASMSKAMSLYLVFDALSKGEIKEDTVITAKPTDEAIANIYEISNNKIVSGV 120
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG-- 157
+ + S + K++ MN SK LG++ T + NA G
Sbjct: 121 KYTVSELITMTAVPSSNAATVMLANYLSDNDPDKWIDRMNEKSKELGMTNTKWYNASGAG 180
Query: 158 -------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
H + TTARD++I+++ + P+ + Y + + +K
Sbjct: 181 AASYKGYYTPKRYDNNHSNQTTARDLSIMAYNLIKHHPEILKYTSQQTVTVKKGTPYEET 240
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG------ALDR 249
+ + G DG+KTG + +N +++ +G+Q +I+VILG
Sbjct: 241 FENYNYSLPGADYGLKGVDGLKTGSSPRGDYNYISTCKRGNQRVISVILGVGNWEDESSE 300
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
R+ SL+ F + + +K ++ + + ++ V Q+ I+
Sbjct: 301 KIRHAFGNSLIEKMFKDYSYKKVLSKGKQKI-DGKKYDVQKDVYATVKKGQEPKISVKND 359
Query: 310 MKEAKDKESHFIDFEKITLLK 330
+ K + +K
Sbjct: 360 YVLVDNGLKTVSPKIKASTVK 380
>gi|330999158|ref|ZP_08322877.1| serine-type D-Ala-D-Ala carboxypeptidase [Parasutterella
excrementihominis YIT 11859]
gi|329575358|gb|EGG56902.1| serine-type D-Ala-D-Ala carboxypeptidase [Parasutterella
excrementihominis YIT 11859]
Length = 388
Score = 127 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 7/246 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S D +T V+ E D P AS+TKLMTA V+ L
Sbjct: 137 SSDPLGLSSTAVLAYDMDTNQVLYEKNADQPLPIASITKLMTALVIVESG----VNLDDK 192
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
T+++ ++S + G ++ AL L ++ S N A +A + + +F++ MN
Sbjct: 193 FTVTREDFVPSSAHSKLRMGMEISRRQALHLALMSSDNRAAHFLARTYPTGKAQFIKEMN 252
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+ LG+ + F ++ G+ + +++ + + + I ++
Sbjct: 253 IKAALLGMKDSVFYDSIGLNNDNRSSAVDLSYLITGASEYALIRELSTTPEASFRIGKRE 312
Query: 200 Y--PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
TN + + KTG T A+G+ +V A +++ + L + ++ R +
Sbjct: 313 VISSTTNRLIKDEDWDIELQKTGLTTAAGYCMVMQAHVDGKNVAFIFLDSPNKYARANDA 372
Query: 257 ASLLSM 262
L S
Sbjct: 373 EKLRSY 378
>gi|317051485|ref|YP_004112601.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfurispirillum
indicum S5]
gi|316946569|gb|ADU66045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfurispirillum
indicum S5]
Length = 341
Score = 127 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 48/257 (18%), Positives = 105/257 (40%), Gaps = 13/257 (5%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
E ++L ++D N ++ ASLTK+ + +++ +
Sbjct: 89 PEASQLGAIIVVDANRQEIVYAKNLHEVMPIASLTKVFLMEELLDRIQQGALTFDKELRA 148
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF-VQHMNNT 141
S +S S ++ T++ K ++ SAND A + E + + Q +
Sbjct: 149 STRSSLIGGSRVYLREHENTTIEQLAKATMIHSANDAAYLLGEVIGGGDANHAAQLLTAK 208
Query: 142 SKNLGLSATHFMNAHGVVQHG---HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
++ LGL T N +G+ G + +T ++A ++++ P+ + +
Sbjct: 209 AQTLGLKNTRLYNVNGLPNRGGPDNISTPYELAQFTFKLMARNPEIFEIASTEVDYFRRP 268
Query: 199 K-----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
N N + G+KTG+T ++GF ++ ++ + +++LI VIL A R+
Sbjct: 269 GGQDFLLVNRNRPLVRLDYVTGLKTGYTNSAGFCVITTSNKNNRNLITVILNAPSSQIRD 328
Query: 254 KVSASLLSMGFYNKTDR 270
+ + L+ + +
Sbjct: 329 RAAKRLID----HFSTI 341
>gi|108798187|ref|YP_638384.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS]
gi|119867283|ref|YP_937235.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
gi|108768606|gb|ABG07328.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. MCS]
gi|119693372|gb|ABL90445.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. KMS]
Length = 410
Score = 127 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/259 (22%), Positives = 94/259 (36%), Gaps = 14/259 (5%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + D +TG VIA P PAS+ K++ A
Sbjct: 86 IITAPGAPPAPADVSAEAWLVADMDTGEVIAARDPHGRHRPASVIKVLIAIQSLKE---- 141
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + ++ G T+++ L L++ S ND A A+A L +
Sbjct: 142 -LNLAKAVPGTPEDGAAEGTSVGVDVGGLYTVNDLLHGLLMYSGNDAAHALARQLGGMDT 200
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
++ N + LG T G+ G T+A D+A+ P + +
Sbjct: 201 ALLKL-NQLAGKLGGRDTRVATPSGLDGPGMSTSAYDIALFYRY-AWRNPTFTEIVATRT 258
Query: 193 LEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-G 245
+ N + + GA G KTGFT +G V A + + L+AV+L G
Sbjct: 259 YDFPGRDGNPPYPIENDVKLLYNYPGALGGKTGFTDDAGQTFVGGAERDGRRLVAVLLRG 318
Query: 246 ALDRNTRNKVSASLLSMGF 264
+ +A LL GF
Sbjct: 319 TRQPIAPWEQAARLLDYGF 337
>gi|126433845|ref|YP_001069536.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
gi|126233645|gb|ABN97045.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium sp. JLS]
Length = 410
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/259 (22%), Positives = 94/259 (36%), Gaps = 14/259 (5%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + D +TG VIA P PAS+ K++ A
Sbjct: 86 IITAPGAPPAPADVSAEAWLVADMDTGEVIAARDPHGRHRPASVIKVLIAIQSLKE---- 141
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + ++ G T+++ L L++ S ND A A+A L +
Sbjct: 142 -LNLAKAVPGTPEDGAAEGTSVGVDVGGLYTVNDLLHGLLMYSGNDAAHALARQLGGMDT 200
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
++ N + LG T G+ G T+A D+A+ P + +
Sbjct: 201 ALLKL-NQLAGKLGGRDTRVATPSGLDGPGMSTSAYDVALFYRY-AWRNPTFTEIVATRT 258
Query: 193 LEI------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-G 245
+ N + + GA G KTGFT +G V A + + L+AV+L G
Sbjct: 259 YDFPGRDGNPPYPIENDVKLLYNYPGALGGKTGFTDDAGQTFVGGAERDGRRLVAVLLRG 318
Query: 246 ALDRNTRNKVSASLLSMGF 264
+ +A LL GF
Sbjct: 319 TRQPIAPWEQAARLLDYGF 337
>gi|329938089|ref|ZP_08287540.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
M045]
gi|329302578|gb|EGG46468.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
M045]
Length = 467
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 50/331 (15%), Positives = 93/331 (28%), Gaps = 23/331 (6%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + + + D G V+A + PAS K++ A +
Sbjct: 114 APVLPKDLTARSWIVADAENGDVLAAHNAHWRLPPASTLKMLFADTLLPKFPR---TTEH 170
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ S A S+ L L + + + AV + ++ VQ M
Sbjct: 171 EVAASDLAGMGAGSSVVPLHKGETYSVRDLWLGVFLKSGNDAVHVLSAMNGGVAATVQDM 230
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
++ L T ++ G ++A D+ +++ + +K
Sbjct: 231 RAHAEELRALDTTVVSPDGYDAPKQVSSAYDLTLIARSGLQKKDFREYCATVKTSFPGKT 290
Query: 199 K------------YPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
NTN V + G G+K G T +G A +G + L+
Sbjct: 291 TKSGGKKSRKTFEIRNTNRLLAGDTDVPAYPGLAGVKNGNTTEAGATFTGVAERGGRVLL 350
Query: 241 AVILGALD--RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++ D N K +A LL GF + ++ S+ + T
Sbjct: 351 VTVMNPEDHGHNEVYKEAARLLDWGFSAAGKATPVGELVAPEGAAGDSSAAGDAGTPTAT 410
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
LL
Sbjct: 411 PAPSTEPVAAAAARGGSGGMGVALGVAGGLL 441
>gi|228932656|ref|ZP_04095531.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228827028|gb|EEM72787.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 407
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 72/301 (23%), Positives = 127/301 (42%), Gaps = 15/301 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + T +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 16 VAPPPKEGPNVFSQFATTIDAKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTK----- 70
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T+S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 71 PEDQFTLSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 130
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 131 FANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITR-GVQKYPEILQAMNTKRT 189
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 190 TVTTSRQTVSIFNKSTYFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 248
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y S E+ + E N
Sbjct: 249 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIESELEKSAELMLKKDEGKNVK 308
Query: 308 T 308
T
Sbjct: 309 T 309
>gi|315445089|ref|YP_004077968.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
gi|315263392|gb|ADU00134.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
Length = 277
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/285 (20%), Positives = 104/285 (36%), Gaps = 28/285 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-----------------ETNKLPYYTLLDTNTGHVIA 43
MR+ L +A A+ + + +S+A + + D +TG V+A
Sbjct: 1 MRRRLAGLAFALGALLTASVSVAAPGVAQPAAQPAAAQPIPDGPAKAWLVADLDTGRVLA 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
P + PAS K++ A V + +++ ++ S + G T
Sbjct: 61 SKDPYGTYAPASTIKVLLAMTVLDH-----LRPDSFARANESHTKIECSCAGLTPGQAYT 115
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--VQH 161
+ +++ S ND A + + L MN + +G +T + G+
Sbjct: 116 TAQLVSAILMVSGNDAATMLGDMLGGQRVAV-AAMNRKAALVGARSTKASSTSGLDGPGW 174
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
TT D+A++ +P + GK N N + + G G KTGFT
Sbjct: 175 ESVTTPHDLAVIMRAAL-KYPLIAQIMRSPTAPFPGKTLHNQNELLSRYPGDLGGKTGFT 233
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ V +A +G++ L+ V + + LL GF
Sbjct: 234 NLARKTYVGAAQRGNRRLVVVQMYGTG--DLYGQAMQLLDYGFSQ 276
>gi|297155472|gb|ADI05184.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces bingchenggensis
BCW-1]
Length = 302
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 75/294 (25%), Positives = 121/294 (41%), Gaps = 26/294 (8%)
Query: 1 MRQF--LVIIAMAMLSNIFPFLSI-----AETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
MR++ VI + A +S + P + LLD + + D
Sbjct: 1 MRRWGAAVIASTAAVSVVLPVSTAQAAGGPSGISAKGAYLLDNSANKQLWAKAADTKRPM 60
Query: 54 ASLTKLMTAYVVFSFLKEK-KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
AS TKLMTA VV +T + + S + KKG +T+ L L+
Sbjct: 61 ASTTKLMTAVVVLDSRGLNLSKKVTVKQSYIDYVARVGGSKADLKKGDKLTVKQLLYGLM 120
Query: 113 VKSANDIAVAIAESL------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-VQHGHYT 165
+ S D A+A+A++ K K F+ MN + LG++ TH+ G+ +YT
Sbjct: 121 LPSGCDAAMALADTFGTGDTTAKRTKSFISQMNKKASALGMTKTHYDTFDGISYGGQNYT 180
Query: 166 TARDMAILSWRIKTDFPQYMHYFQI--------KGLEIKGKKYPNTNWAVGTFLGADGMK 217
T RDMA L+ + + + + NTN +G++ GA G+K
Sbjct: 181 TPRDMAKLARHALGNSTLSTVVKSVDTVQKAPAANGRTRTYSWNNTNRLLGSYSGAIGIK 240
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
TG A G +V +A + ++++ VIL A R + +L F + T K
Sbjct: 241 TGTGTAPGRCLVFAAKRNGRTVVGVILNAP---KRYPDAKKMLDWAFNSTTTVK 291
>gi|145224759|ref|YP_001135437.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
gilvum PYR-GCK]
gi|145217245|gb|ABP46649.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
gilvum PYR-GCK]
Length = 277
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/285 (20%), Positives = 104/285 (36%), Gaps = 28/285 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-----------------ETNKLPYYTLLDTNTGHVIA 43
MR+ L +A A+ + + +S+A + + D +TG V+A
Sbjct: 1 MRRRLAGLAFALGALLTASVSVAAPGIAQPAAQPAAAQPIPDGPAKAWLVADLDTGRVLA 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
P + PAS K++ A V + +++ ++ S + G T
Sbjct: 61 SKDPYGTYAPASTIKVLLAMTVLDH-----LRPDSFARANESHTKIECSCAGLTPGQAYT 115
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--VQH 161
+ +++ S ND A + + L MN + +G +T + G+
Sbjct: 116 TAQLVSAILMVSGNDAATMLGDMLGGQRVAV-AAMNRKAALVGARSTKASSTSGLDGPGW 174
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
TT D+A++ +P + GK N N + + G G KTGFT
Sbjct: 175 ESVTTPHDLAVIMRAAL-KYPLIAQIMRSPTAPFPGKTLHNQNELLSRYPGDLGGKTGFT 233
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ V +A +G++ L+ V + + LL GF
Sbjct: 234 NLARKTYVGAAQRGNRRLVVVQMYGTG--DLYGQAMQLLDYGFSQ 276
>gi|290962655|ref|YP_003493837.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22]
gi|260652181|emb|CBG75313.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei
87.22]
Length = 399
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 53/254 (20%), Positives = 95/254 (37%), Gaps = 15/254 (5%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ + + D +G V+A + PAS K + A V L L +
Sbjct: 74 PQDLSAVSWLVADAGSGEVLAAHDAHRRLPPASTLKTLFALTVLPGLPAG---LRHTVKS 130
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ A S+ K + L + S+ + AV + SL K + M +
Sbjct: 131 EELAGIGAGSSLVGVKENNTYTVADLWRGVFLSSGNDAVRVLASLNGGWKATTEQMQAKA 190
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-- 200
+ LG TH ++ G G ++A D+A+ + ++ Y +
Sbjct: 191 RALGARDTHVVSPDGYDAPGQVSSAYDLAVFGRAGLRN-AEFAGYCATATATFPAGGWSY 249
Query: 201 --PNTNW-----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR- 252
NTN V + G G+K G+T +G +VA+A +G ++L+ ++
Sbjct: 250 GIQNTNRLLTGAGVEPYPGLIGVKNGYTTNAGNTLVAAAKRGGRTLVVTVMRPESGGGHA 309
Query: 253 -NKVSASLLSMGFY 265
+ + SLL GF
Sbjct: 310 VYEEARSLLDWGFR 323
>gi|207582659|gb|ACI24891.1| D-alanyl-D-alanine carboxypeptidase-like protein [uncultured
bacterium]
Length = 179
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 91/168 (54%), Gaps = 2/168 (1%)
Query: 2 RQFLVIIAMAMLSNIFPF--LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++ +++ + + + + Y L+D ++G+V+ EN D PASLTKL
Sbjct: 8 KRLCLLVPLIVTPAAWAVEMMPSPPQLAAKSYVLMDASSGNVLVENNGDQRLPPASLTKL 67
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTAY+ ++ + P+T+S+NA S K G+ +++ + L +I++S ND
Sbjct: 68 MTAYIATLEIRRGQIGENDPVTVSENAWRTGGSRMFIKVGTQVSVSDLLHGIIIQSGNDA 127
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+VA++E + +E F MN T+ LG+S +HFMN G+ HY++A
Sbjct: 128 SVALSEHIAGSEDAFADMMNKTAGELGMSNSHFMNPTGLPNPDHYSSA 175
>gi|118469695|ref|YP_886773.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
MC2 155]
gi|118170982|gb|ABK71878.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
MC2 155]
Length = 296
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 53/255 (20%), Positives = 93/255 (36%), Gaps = 14/255 (5%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + D +TG ++A PAS K + A VV L +
Sbjct: 39 SVAPPEGPAETWVVADMDTGQILAGRGEYVRHAPASTIKTLLALVVLDE-----VPLDST 93
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
I + ++ + + G T T L+ ++ S ND A +A + + V MN
Sbjct: 94 IVADETDTDVECNCAGVAPGRTYTARQLLEAALLASGNDAANTLAR-MLGGPEAAVAKMN 152
Query: 140 NTSKNLGLSATHFMNAHGVVQHGH--YTTARDMAILSWRIKTDF---PQYMHYFQIKGLE 194
+ LG T+ + G+ G ++T D+A++ D + +
Sbjct: 153 AKAAQLGARDTNVVTPSGLDAPGMPFWSTPHDLAVIFRAAMADPVFAQITAMPSTVFPAK 212
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNT 251
+ N N + + G G KTGFT + VA+A + + L+ ++ T
Sbjct: 213 TGDRVLVNQNELLHRYPGTLGGKTGFTDIARKTFVAAAQRDGRRLVIAMMYGLVKEGGPT 272
Query: 252 RNKVSASLLSMGFYN 266
+A LL GF
Sbjct: 273 YWDQAAGLLDWGFAQ 287
>gi|301299364|ref|ZP_07205646.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300853035|gb|EFK80637.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 384
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 64/363 (17%), Positives = 137/363 (37%), Gaps = 35/363 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFL---SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ +L+++ + + + A+ ++D TG V+ + + + ASLTK
Sbjct: 6 KNWLILVMLGIAIITGSGIMRGVKADKIDAKAAYMIDAGTGQVLYQQNANSKYPIASLTK 65
Query: 59 LMTAYVVFSFLKEKKAMLTTPI----TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
++T V+ + +K I +S A+ + SN +G + T+ + ++ +++
Sbjct: 66 ILTIAVIMKDIHNQKLSWDQKIKVNKDVSDMANNWQYSNVQLNEGESYTVKSLVESMMIV 125
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------Q 160
SA+ A+A + + K F + M + G++ N G+
Sbjct: 126 SADGSTEALALADAGSVKAFNEKMKEVAHEAGVTDAEIYNMIGLPNSDLGNLKLKNVGDD 185
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--------- 211
+ +A+D+A++S + ++P+ + + K ++ K N ++
Sbjct: 186 QENKFSAKDIALISKYLVNNYPEVIDITKQKNVDFKISDDQTYNMENINYMLEGSYAAPK 245
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
DG+KTGFT +G+ V + Q +I VIL A D + + ++ N
Sbjct: 246 NGTIDGLKTGFTDEAGYCFVGTGTFNGQRVITVILNASDYKKQFSETNKMIESVMNN--- 302
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
K +N +Q L E +++ K + K K +
Sbjct: 303 DKVVNTKDIKSVKQALKKENLKVNDTNIWVAKNTDPKQIKAKLTLSNGKIKAKNAKNEKV 362
Query: 330 KNK 332
Sbjct: 363 GTI 365
>gi|311278881|ref|YP_003941112.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Enterobacter
cloacae SCF1]
gi|308748076|gb|ADO47828.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Enterobacter
cloacae SCF1]
Length = 314
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 99/259 (38%), Gaps = 12/259 (4%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + ++D NT VI + PD AS+TKLMTA VV
Sbjct: 23 AIAKPAATTTASKPDIASGSAMIVDLNTNQVIYASDPDLVRPMASITKLMTAMVVLDA-- 80
Query: 71 EKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L + + E S + S ++ N L L ++ S N A ++A
Sbjct: 81 --HLPLDEMLKVDISQTPEMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPG 138
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQY 184
F++ MN +K LG++ T ++ G+ + +TARD+ L + +
Sbjct: 139 GYDAFIRAMNAKAKALGMTHTRYVEPTGL-SIHNVSTARDLTKLLIATKQYPLIGQLSTT 197
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ NTN V KTGFT A+G +V + ++ + V+
Sbjct: 198 KEDTATFRNPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVMNNRPVAMVV 257
Query: 244 LGALDRNTRNKVSASLLSM 262
+ A + T ++ L +
Sbjct: 258 MDAFGKYTHFADASRLRTW 276
>gi|300703920|ref|YP_003745522.1| d-alanyl-d-alanine carboxypeptidase [Ralstonia solanacearum
CFBP2957]
gi|299071583|emb|CBJ42907.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum
CFBP2957]
Length = 375
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 100/248 (40%), Gaps = 8/248 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + ++D +G V+ + AS+TKLMTA VV + +
Sbjct: 95 ATPDALALRSSVALVMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDTHQP----MDE 150
Query: 79 PITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ I+++ +Y + + + + +T ++ L L ++ S N A A+ S FV
Sbjct: 151 LLEITEDDRDYERNTGSRLRYGTMLTREDLLLLALMSSENRAASALGRSYPGGRPAFVAA 210
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN + LG++ TH+++++G+ + I+ K + + G
Sbjct: 211 MNRKAHELGMNDTHYVDSNGLSSSNVSSAMDLAKIVMAAYKVPLIRQFTTTAEHTVNANG 270
Query: 198 KKYP--NTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ NTN V G KTGF +G +V A ++++ V L + TR
Sbjct: 271 RTLHYVNTNRLVRGGEWEIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTRFA 330
Query: 255 VSASLLSM 262
+ + +
Sbjct: 331 DAVRVRNW 338
>gi|317509103|ref|ZP_07966732.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC
BAA-974]
gi|316252632|gb|EFV12073.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC
BAA-974]
Length = 303
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 54/250 (21%), Positives = 96/250 (38%), Gaps = 15/250 (6%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + D ++G ++A P PAS K + A V L + +T +
Sbjct: 51 PDGPADAWLVADMDSGEILAAKNPYAYHPPASTIKTLLALTVIDEAP-----LDSAVTAT 105
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
K+ K G T+ L L++ S ND A +AESL + + MN ++
Sbjct: 106 KDDLAECSCV-GIKPGHDYTIRQLLDALLLVSGNDAANTLAESLGGFDSAVAK-MNAKAQ 163
Query: 144 NLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDF---PQYMHYFQIKGLEIKGK 198
+G + TH + G+ +TT D+A++ + +
Sbjct: 164 EIGATDTHTGSPSGLDWPGMEMHTTPHDLAVIFREALNRPLFAEITAEPSAMFPGDGGEN 223
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL---GALDRNTRNKV 255
+ N + + + GA G KTGFT A+ V +A + + L+ ++ T
Sbjct: 224 EIHNQDELLSLYPGALGGKTGFTNAAKKTFVGAAERDGRRLVVAMMYGLNTPGNPTYWDQ 283
Query: 256 SASLLSMGFY 265
+ +LL GF
Sbjct: 284 AQALLDWGFA 293
>gi|239942599|ref|ZP_04694536.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
roseosporus NRRL 15998]
gi|239989058|ref|ZP_04709722.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
roseosporus NRRL 11379]
gi|291446061|ref|ZP_06585451.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
15998]
gi|291349008|gb|EFE75912.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
15998]
Length = 299
Score = 126 bits (316), Expect = 4e-27, Method: Composition-based stats.
Identities = 59/270 (21%), Positives = 105/270 (38%), Gaps = 15/270 (5%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A S A L++ TG + D S TK+MTA VV S
Sbjct: 29 AFASTAHAATPPAPKIVAKGGFLMNDGTGKTLFTKSADTRRATGSTTKIMTALVVLSQKN 88
Query: 71 EKKAM-LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+T S S++ G +T+ L L++ S D A A+A+
Sbjct: 89 VNLKSKVTIQKAYSDYIVSKNASSARLIVGDKVTVGQLLYGLMLPSGCDAAYALADKFGS 148
Query: 130 TEKKFVQ------HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
+ + MN+T+K+L L T F + G+ +Y+T RD+ ++ + +
Sbjct: 149 GSTRAARVKSFIGKMNSTAKSLKLKNTRFDSFDGIGNGNNYSTPRDLTKIASQAMKNSTF 208
Query: 184 Y--------MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
K + + NTN +G++ GA G+KTG + + +V +A +
Sbjct: 209 RSVVKTKSTKQKVTTKSGGYRYMSWTNTNKLLGSYSGATGVKTGSGPTAKYCLVFAATRK 268
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+++I +L + R + ++ GF
Sbjct: 269 GKTVIGTVLTSTSEANRTADAKKMMDYGFK 298
>gi|307330670|ref|ZP_07609808.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
violaceusniger Tu 4113]
gi|306883649|gb|EFN14697.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
violaceusniger Tu 4113]
Length = 544
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 45/281 (16%), Positives = 91/281 (32%), Gaps = 26/281 (9%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFLKEKKAM 75
++ + + + D +G V+A + PAS K++ T K K
Sbjct: 200 APALPKELSGKSWLVADAQSGDVLASHNAHWQLPPASTLKMLFADTLLPKMPKTKTHKVQ 259
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L+ + + +S + + L L+ AV + ++ V
Sbjct: 260 LSDLEGMGEGSSLVGVKENYTYSVHDLWLGVFLRSGND------AVHVLSAMNGGVPATV 313
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
M +K+L TH + G + G ++A D+ + + +
Sbjct: 314 SEMQAHAKHLNAGDTHVVTPDGYDEKGQVSSAYDLTLFARSGLQKADFREYCSTATAQFP 373
Query: 196 KGKK----------YPNTNW-----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ NTN V + G G+K G T +G A +G + L+
Sbjct: 374 GTFEKGKKKRSSFGIQNTNRLLTGFGVEPYKGIAGVKNGNTTNAGATFTGVAQRGGRVLL 433
Query: 241 AVILGALDRNT--RNKVSASLLSMGFYNKTDRKKINYIIKD 279
++ ++ K +A L GF + +++
Sbjct: 434 VTVMNPQEKEANEVYKETARLFDWGFKAAGSVNPVGTLVRP 474
>gi|312872197|ref|ZP_07732270.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
2062A-h1]
gi|311092281|gb|EFQ50652.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
2062A-h1]
Length = 425
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 117/344 (34%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ +K K T + S+
Sbjct: 59 ALNAKAAIIYDLKSGQIMYAKNITQKLPVASMSKLLTIYLTLKAIKAGKISWQTKVMPSR 118
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNN 140
A + + ++ L +SAN A+ +A ++ + KKFV M
Sbjct: 119 EAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 178
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 179 QLLDWHISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKHLLLEFPQVLE 238
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L+ K K N N + DG+KTG T A+G + ++ ++
Sbjct: 239 TTRIAKLDFLDGRKTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 297
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ ++ VI+GA + R + L + + N + + P
Sbjct: 298 GRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNRPI 357
Query: 292 ISEEVCTTQKEIINYNT--QMKEAKDKESHFIDFEKITLLKNKI 333
C Q I + ++ + + T + I
Sbjct: 358 NEVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 401
>gi|82543546|ref|YP_407493.1| D-alanyl-D-alanine endopeptidase [Shigella boydii Sb227]
gi|81244957|gb|ABB65665.1| penicillin-binding protein 7 [Shigella boydii Sb227]
gi|320184846|gb|EFW59636.1| Murein-DD-endopeptidase [Shigella flexneri CDC 796-83]
Length = 313
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 59/258 (22%), Positives = 102/258 (39%), Gaps = 10/258 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + ++D NT VI N+PD AS++KLMTA VV
Sbjct: 26 AVAKTAAAITASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARL 85
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L I+ + S + S ++ + L L ++ S N A ++A
Sbjct: 86 PLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGG 142
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYM 185
K F++ MN +K+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 143 YKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTR 201
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ NTN V KTGFT A+G +V + ++ + V++
Sbjct: 202 EDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261
Query: 245 GALDRNTRNKVSASLLSM 262
A + T ++ L +
Sbjct: 262 DAFGKYTHFADASRLRTW 279
>gi|191170132|ref|ZP_03031686.1| penicillin-binding protein 7 [Escherichia coli F11]
gi|190909648|gb|EDV69233.1| penicillin-binding protein 7 [Escherichia coli F11]
Length = 297
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 59/258 (22%), Positives = 103/258 (39%), Gaps = 10/258 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + + ++D NT VI N+PD AS++KLMTA VV
Sbjct: 10 AVAKTVAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARL 69
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L I+ + S + S ++ + L L ++ S N A ++A
Sbjct: 70 PLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGG 126
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYM 185
K F++ MN +K+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 127 YKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTR 185
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ NTN V KTGFT A+G +V + ++ + V++
Sbjct: 186 EDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 245
Query: 245 GALDRNTRNKVSASLLSM 262
A + T ++ L +
Sbjct: 246 DAFGKYTHFADASRLRTW 263
>gi|313887666|ref|ZP_07821348.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312846275|gb|EFR33654.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 456
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 71/318 (22%), Positives = 135/318 (42%), Gaps = 17/318 (5%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
Y L D +G ++ D AS +KL++ +VV ++E K L + I K A+
Sbjct: 95 KSYLLGDYKSGQILEGYNLDEIRAMASTSKLVSIFVVLDKIQEGKISLNDEVEIDKEAAA 154
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S+ K+G +T++ ++ +V S ND A+ + + + FV+ MN+ +LGL
Sbjct: 155 LTGSSFKLKEGDKVTVEKLIEASMVVSGNDAITALGKHVAGSTDAFVKMMNDKCHDLGLK 214
Query: 149 ATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PN 202
+N G+ + + T R+M +L+ + P+ + Y I LE G+ + N
Sbjct: 215 NALMVNPTGLTNYEILDYNKMTTREMFMLASELIKFHPEILKYTTIAKLEDPGRNFIEYN 274
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD-------QSLIAVILGALDRNTRNKV 255
TN +G DG+KTG+T A+G ++ + ++ LI + G+ R
Sbjct: 275 TNPVLGIVPEVDGLKTGYTNAAGRCVILTGLEKGVDEKSKDMRLIGITTGSNSDFERFVA 334
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI----SEEVCTTQKEIINYNTQMK 311
L++ GF + + + + L ++ NI E K Y +++
Sbjct: 335 CKRLITKGFEDYGYNAIGDTEKEVRTIEVLHSQDENIPVYQKEIGYILSKSNDKYRERVE 394
Query: 312 EAKDKESHFIDFEKITLL 329
D ++ + +
Sbjct: 395 IKDDLKAPLEAGSSVGKI 412
>gi|91211421|ref|YP_541407.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UTI89]
gi|110642343|ref|YP_670073.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 536]
gi|117624337|ref|YP_853250.1| D-alanyl-D-alanine endopeptidase [Escherichia coli APEC O1]
gi|237704597|ref|ZP_04535078.1| penicillin-binding protein 7 [Escherichia sp. 3_2_53FAA]
gi|300981491|ref|ZP_07175572.1| beta-lactamase [Escherichia coli MS 200-1]
gi|331658214|ref|ZP_08359176.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli TA206]
gi|91072995|gb|ABE07876.1| penicillin-binding protein 7 precursor
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli UTI89]
gi|110343935|gb|ABG70172.1| D-alanyl-D-alanine- endopeptidase [Escherichia coli 536]
gi|115513461|gb|ABJ01536.1| D-alanyl-D-alanine endopeptidase [Escherichia coli APEC O1]
gi|226900963|gb|EEH87222.1| penicillin-binding protein 7 [Escherichia sp. 3_2_53FAA]
gi|294492842|gb|ADE91598.1| penicillin-binding protein 7 [Escherichia coli IHE3034]
gi|300307564|gb|EFJ62084.1| beta-lactamase [Escherichia coli MS 200-1]
gi|315285794|gb|EFU45234.1| beta-lactamase [Escherichia coli MS 110-3]
gi|315299372|gb|EFU58624.1| beta-lactamase [Escherichia coli MS 16-3]
gi|323951931|gb|EGB47805.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H252]
gi|323955899|gb|EGB51652.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H263]
gi|331056462|gb|EGI28471.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli TA206]
Length = 313
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 59/258 (22%), Positives = 103/258 (39%), Gaps = 10/258 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + + ++D NT VI N+PD AS++KLMTA VV
Sbjct: 26 AVAKTVAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARL 85
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L I+ + S + S ++ + L L ++ S N A ++A
Sbjct: 86 PLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGG 142
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYM 185
K F++ MN +K+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 143 YKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTR 201
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ NTN V KTGFT A+G +V + ++ + V++
Sbjct: 202 EDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261
Query: 245 GALDRNTRNKVSASLLSM 262
A + T ++ L +
Sbjct: 262 DAFGKYTHFADASRLRTW 279
>gi|242239829|ref|YP_002988010.1| D-alanyl-D-alanine endopeptidase [Dickeya dadantii Ech703]
gi|242131886|gb|ACS86188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Dickeya
dadantii Ech703]
Length = 315
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 54/254 (21%), Positives = 96/254 (37%), Gaps = 8/254 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
++ P + + ++D V+ PD AS+TKLMTA VV +
Sbjct: 29 TSTAPHAAARQEIASGSAMVVDLRNNEVLYSTNPDVVVPIASVTKLMTAMVVLDANQPMD 88
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
++ I+ + S + GS ++ + L L ++ S N A ++A +
Sbjct: 89 ERISVDISQTAE---MKGVYSRVRLGSEISRHDMLLLALMSSENRAAASLAHHYRGGYQA 145
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F+ MN +K LG++ T ++ G+ H T +L + + Q K
Sbjct: 146 FIAAMNAKAKALGMTHTRYVEPTGLSIHNVSTARDLTKLLIASKQYPLLSQLSTTQEKTA 205
Query: 194 EIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
Y NTN + KTGFT +G +V + + + V+L A
Sbjct: 206 TFTNPSYSLPFRNTNHLIYRSDWNIQLTKTGFTNQAGHCLVMRTVINQRPVALVVLDAFG 265
Query: 249 RNTRNKVSASLLSM 262
+ T + L +
Sbjct: 266 KFTHFADANRLRNW 279
>gi|312873554|ref|ZP_07733601.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
2052A-d]
gi|311090807|gb|EFQ49204.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
2052A-d]
Length = 385
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 60/344 (17%), Positives = 115/344 (33%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ +K K T + S+
Sbjct: 19 ALNAKAAIIYDLKSGQIMYAKNITQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSR 78
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNN 140
A + + ++ L +SAN A+ +A ++ + KKFV M
Sbjct: 79 EAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 138
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 139 QLLDWHISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKHLLLEFPQVLD 198
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L K N N + DG+KTG T A+G + ++ ++
Sbjct: 199 TTRISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 257
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ ++ VI+GA + R + L + + N + + P
Sbjct: 258 GRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNSPI 317
Query: 292 ISEEVCTTQKEIINYNT--QMKEAKDKESHFIDFEKITLLKNKI 333
C Q I + ++ + + T + I
Sbjct: 318 NEVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 361
>gi|332161016|ref|YP_004297593.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325665246|gb|ADZ41890.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 311
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 10/247 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
++D T VI N D AS+TKLMTA VV K L I+
Sbjct: 38 APLELASGSAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLDA----KLPLDEIIS 93
Query: 82 IS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ E S + S ++ + L L ++ S N A ++A F+ MN
Sbjct: 94 VDIHQTKEMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFINAMNA 153
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+K+LG++ T ++ G+ + T +L + + K + Y
Sbjct: 154 KAKSLGMTKTRYVEPTGLSINNVSTARDLTKLLIATKQYPLIGQLSTTTEKMATFREPNY 213
Query: 201 ----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
NTN V KTGFT +G + + G++ + V+L A + T
Sbjct: 214 TLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYTHFAD 273
Query: 256 SASLLSM 262
+ L S
Sbjct: 274 ANRLRSW 280
>gi|229547447|ref|ZP_04436172.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX1322]
gi|256854799|ref|ZP_05560163.1| DD-carboxypeptidase [Enterococcus faecalis T8]
gi|229307479|gb|EEN73466.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX1322]
gi|256710359|gb|EEU25403.1| DD-carboxypeptidase [Enterococcus faecalis T8]
gi|315028349|gb|EFT40281.1| beta-lactamase [Enterococcus faecalis TX4000]
Length = 493
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 72/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDSAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + VP S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVVPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|46446028|ref|YP_007393.1| putative serine-type D-Ala-D-Ala carboxypeptidase (penicillin
binding protein) [Candidatus Protochlamydia amoebophila
UWE25]
gi|46399669|emb|CAF23118.1| putative serine-type D-Ala-D-Ala carboxypeptidase (penicillin
binding protein) [Candidatus Protochlamydia amoebophila
UWE25]
Length = 456
Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats.
Identities = 77/362 (21%), Positives = 135/362 (37%), Gaps = 35/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR + I + ++S + LL+ +G ++ E PAS TK+
Sbjct: 33 MRVW-YIFFVTIISFSLRSAPLDFKIAGEAAILLNAESGAILFEQEAYSCQFPASTTKVA 91
Query: 61 TAYVVFSFLKEKKAML---------------TTPITISKNASEYPPSNSTFKKGSTMTLD 105
TA S ++ M+ E S+ KKG M+L
Sbjct: 92 TALYALSKKQDLNQMMAAEQDSLTTLSQEAKKKTNYDPPYRLEPDGSHIGLKKGEMMSLH 151
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ L +++ S ND A IA +L T F+ +N K +G T F N HG+ H T
Sbjct: 152 DLLGGMLIPSGNDAANVIANALGPTIPVFMAELNIYLKKIGCEKTTFYNPHGLHHPQHQT 211
Query: 166 TARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPNTNWAVG----TFLGADGM 216
TA D+A+++ Y + K + TN + + A G
Sbjct: 212 TAYDLALITKEALKQPVFCELIGQKKYLRPKTNKQAATTLLQTNRLIRPGSFYYSKAIGG 271
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
KTG+ + + A +++LI V+LG +RNT + + L F + KI
Sbjct: 272 KTGYHAKAKKTYIGVARSEERTLIVVLLGYQERNTIFQDAIKLFDAAFN----QPKIQRT 327
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE------SHFIDFEKITLLK 330
+Q+ ++ +P + + T KE + + + E + + + +K +
Sbjct: 328 FLKEGRQSFAHNLPKAACPLQTHLKEPLKLDYYLAEDPEAKCLLYWMIPPLPIQKDQQVG 387
Query: 331 NK 332
Sbjct: 388 EL 389
>gi|328884566|emb|CCA57805.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
venezuelae ATCC 10712]
Length = 426
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 47/298 (15%), Positives = 100/298 (33%), Gaps = 27/298 (9%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF----SFLKEKKA 74
+ + + + D +G ++A + P PAS K++ A + ++
Sbjct: 64 APVLPKELSGRSWIVADAESGEILAAHNAHWPLAPASTLKMLFADTLLPKFPDATQKHLV 123
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
T I + +S + L L+ AV + S+ ++
Sbjct: 124 TTTDLAGIGEGSSLVGIKEKQTYTVHDLWLGVFLRSGND------AVHVLTSMNNGLRQT 177
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY---------M 185
V+ MN+ + L TH ++ G G ++A D+ +++
Sbjct: 178 VKDMNDHAAELQALDTHVVSPDGYDAPGQVSSAYDLTLIARNGMQKKDFREYAATPRAAF 237
Query: 186 HYFQIKGLEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
Q G + + + NTN V + G G+K G T +G A + + L
Sbjct: 238 PGEQKPGKKRETFEIQNTNRLLTGDLGVAPYQGIAGVKNGNTTHAGATFTGVAERNGRVL 297
Query: 240 IAVILGALDRNTR--NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
+ ++ + + +A LL GF + +++ + S + +
Sbjct: 298 LVTVMNPSSKEQHAVYREAARLLDWGFAAAGKVTPVGELVRPRSARTESTAPGDGTAP 355
>gi|307327153|ref|ZP_07606342.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
violaceusniger Tu 4113]
gi|306887234|gb|EFN18231.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
violaceusniger Tu 4113]
Length = 311
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 66/273 (24%), Positives = 118/273 (43%), Gaps = 25/273 (9%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
LLDT + + + AS TK+MTA VV + L
Sbjct: 34 ASAEPPPEVSAQGAYLLDTGSNKELMAKDANTKRPMASTTKIMTALVVLE---TRGLDLN 90
Query: 78 TPITISKNASEYP----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL------ 127
+T+ + +Y S + + G +T++ L L++ S D A+A+A++
Sbjct: 91 QQVTVKQEYRDYVTKAGASTADLQTGDKLTVNQLLYALMLPSGCDAAMALADTFGTGDTT 150
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-VQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ K F+ MN +K+LGL+ T++ + GV +Y+T RD+A L+ R +
Sbjct: 151 AERTKSFISKMNAKAKDLGLANTNYDSFDGVSADSDNYSTPRDVAQLTRRAMDNATFDTV 210
Query: 187 YFQI--------KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + NTN +G++ GA G+KTG T +G +V +A +GD+
Sbjct: 211 VKSVSTKQEAPAANGHTRYYSWDNTNQLLGSYQGAIGVKTGTTTPAGPCLVFAAKRGDKE 270
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
++ V+L R + +L + T+ K
Sbjct: 271 VVGVVLN---DADRYPDAKKMLDWTYDTTTEVK 300
>gi|323968053|gb|EGB63463.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli M863]
Length = 313
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPFAPQAVAKTAVATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKEML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|304439141|ref|ZP_07399059.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304372273|gb|EFM25861.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 437
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 72/321 (22%), Positives = 139/321 (43%), Gaps = 13/321 (4%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ + D TG ++ N D AS +KL++ YVV +K K L +TI A
Sbjct: 75 AKTFLIGDYATGEILEFNDIDEVVAMASTSKLVSVYVVLDQIKAGKLKLDDMVTIPHEAE 134
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
P S+ K+G T T+ L +V S ND ++A + + + FV MN K+LGL
Sbjct: 135 VLPGSSYKIKEGDTKTVKELLTAALVISGNDAITSLAIKVAGSTQAFVDMMNKKCKDLGL 194
Query: 148 SATHFMNAHGVVQH----GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IKGKKYP 201
+ H +N G+ + + T R+M +L+ I + P+ + Y ++ + +
Sbjct: 195 TNAHMINPTGLTDYSIEDYNKMTTREMFLLARYIMKEHPEILEYTKMPSIVEADREFTAY 254
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD-------QSLIAVILGALDRNTRNK 254
+TN +G G+KTG+T A+G ++A+ ++ LI + G+ +R
Sbjct: 255 STNPILGVIPEIQGLKTGYTGAAGRCLIATELKPGDGKTTKDLRLITITTGSKSDWSRYV 314
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
VS + ++ +R N + +++ PN + + +++ ++++
Sbjct: 315 VSKRVANIALTKYENRILGNTTSPVTTIEAENSQEPNYNVYQESEIASLVHPESKVESEI 374
Query: 315 DKESHFIDFEKITLLKNKITK 335
K T++ + K
Sbjct: 375 HLNEIAAPLPKDTVVGSITYK 395
>gi|299066620|emb|CBJ37810.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia solanacearum CMR15]
Length = 392
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 6/247 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + ++D +G V+ + AS+TKLMTA VV + +L
Sbjct: 110 ATPDALALRSSVALVMDQGSGDVLFQKNASAVLPIASITKLMTALVVTDTHQPMDELLEI 169
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ + S + G+ +T ++ L L ++ S N A A+ S FV M
Sbjct: 170 TE---DDRDFERNTGSRLRYGTMLTREDLLLLALMSSENRAASALGRSYPGGRPAFVAAM 226
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + LG++ TH+++++G+ + I+ K + + G+
Sbjct: 227 NRKAHELGMTDTHYVDSNGLSSSNVSSAMDLAKIVMAAYKVPLIRQFTTTAEHTVNANGR 286
Query: 199 KYP--NTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
NTN V G KTGF +G +V A ++++ V L + TR
Sbjct: 287 TLHYVNTNRLVRGGEWDIGLQKTGFINEAGRCLVMQANVHGRNVVMVFLDSAGNLTRFAD 346
Query: 256 SASLLSM 262
+ + +
Sbjct: 347 AVRVRNW 353
>gi|324013985|gb|EGB83204.1| beta-lactamase [Escherichia coli MS 60-1]
Length = 309
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 59/258 (22%), Positives = 103/258 (39%), Gaps = 10/258 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + + ++D NT VI N+PD AS++KLMTA VV
Sbjct: 26 AVAKTVAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARL 85
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L I+ + S + S ++ + L L ++ S N A ++A
Sbjct: 86 PLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGG 142
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYM 185
K F++ MN +K+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 143 YKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTR 201
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ NTN V KTGFT A+G +V + ++ + V++
Sbjct: 202 EDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 261
Query: 245 GALDRNTRNKVSASLLSM 262
A + T ++ L +
Sbjct: 262 DAFGKYTHFADASRLRTW 279
>gi|291616796|ref|YP_003519538.1| PbpG [Pantoea ananatis LMG 20103]
gi|291151826|gb|ADD76410.1| PbpG [Pantoea ananatis LMG 20103]
Length = 315
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 55/279 (19%), Positives = 107/279 (38%), Gaps = 20/279 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
+R L+ +A+ + + + A ++D +G + ++PD
Sbjct: 5 IRFSLLTLALLVSGQVVSLPAQATTTLSQMAPIAQPQIASGSALIVDLTSGKTLFSSHPD 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV + M+T I+ + S K S ++ + L
Sbjct: 65 RVRPIASITKLMTAMVVLDAHQPMNEMVTVDISQTPE---MRGVFSRVKLNSQISRRSML 121
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A + F++ MN ++ LG++ TH++ G+ +
Sbjct: 122 MLALMSSENRAAASLAHAYPGGYNAFIKAMNAKARALGMNHTHYVEPTGLSIQNVSSAED 181
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCA 223
+ +L + + + + Y NTN V KTG+T
Sbjct: 182 LVKLLKATREYPLLSELSTTKEETAVFTHPSYALPFRNTNHLVYKNGWHIQLTKTGYTDE 241
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + ++ + V+L A + T + L
Sbjct: 242 AGHCLVMRTMIKNRPVALVVLDAFGKYTHFADANRLRDW 280
>gi|254830752|ref|ZP_05235407.1| hypothetical protein Lmon1_05309 [Listeria monocytogenes 10403S]
Length = 272
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASL+KLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVENGKPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDEKLNLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MNN +K
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGADFPKEMNNQAKKS 146
Query: 146 GLSA-THFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201
G+S+ T F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN +G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|226941642|ref|YP_002796716.1| PbpG [Laribacter hongkongensis HLHK9]
gi|226716569|gb|ACO75707.1| PbpG [Laribacter hongkongensis HLHK9]
Length = 286
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 62/267 (23%), Positives = 104/267 (38%), Gaps = 14/267 (5%)
Query: 6 VIIAMAMLSNIFP------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+++A + L P S +++ TG V+ D + AS+TKL
Sbjct: 13 MLLATSPLVLALPEHEMQLAASSVPRLHSSAALVVNAQTGEVLFGKNTDRMMSIASITKL 72
Query: 60 MTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
MTA V+ + L ITIS+ ++S GS ++ L L ++ S N
Sbjct: 73 MTAMVMLDSGQP----LDELITISEAEIDRLKNTSSRLAVGSVLSRREMLLLALMSSENR 128
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT--TARDMAILSWR 176
A ++A + FV MN ++ LG+ +T F + G+ T M ++R
Sbjct: 129 AAASLARTSPGGTSAFVSRMNQKARQLGMHSTRFYDPTGLDSRNTSTAEDLARMVAAAYR 188
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQG 235
Q + +Y N+N V G KTG+T +G +V A G
Sbjct: 189 YPLIREDTTTTDQQVYARNRMLQYRNSNALVREGQWQIGLSKTGYTQEAGRCLVMMATVG 248
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSM 262
LI V L + + R + ++ +
Sbjct: 249 STPLIMVFLDSEGSSARINDARNIKTW 275
>gi|256545481|ref|ZP_05472843.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus vaginalis ATCC
51170]
gi|256398877|gb|EEU12492.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus vaginalis ATCC
51170]
Length = 407
Score = 126 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 67/363 (18%), Positives = 131/363 (36%), Gaps = 30/363 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-------------YYTLLDTNTGHVIAENYPD 48
R+ ++ +A L P + A+ Y + + +G + + D
Sbjct: 3 RKKIIAFLLAFLFIFSPIKTFADDTVAKEGDNIVGADKFVKAYLIGNQESGDIFYQKNAD 62
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK---KGSTMTLD 105
+ AS++KLMT + ++ K T + +K A + + +G T+
Sbjct: 63 QTYPIASMSKLMTFLLARDAIESGKISFDTKVKGTKEAEDLTGPEYSAMGIKEGEQYTIK 122
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV---VQHG 162
L L+V S ND A +A ++ +E F MN ++ L L + + NA G+
Sbjct: 123 ELLTGLMVVSGNDCANLLASTISGSEANFANEMNKKAQELNLKSQKYYNASGINTEDDKQ 182
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGF 220
+ ++A+D+ L+ I +P + Y +I G++ K + G DG+KTG
Sbjct: 183 NSSSAKDLFELTRIIVDKYPDILEYSKINGIDDDKKDIHKKSTIPLRDEIKGVDGLKTGT 242
Query: 221 TCASGFNIVASA------IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
T +G + + + + I +++GA + RN L+ +K +
Sbjct: 243 TEEAGHCLTTTIDMNKFDPKNEFRAIGIVMGAEENEFRNSAMTDLIYYVSRYFNYKKLTD 302
Query: 275 Y--IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++ + E +K +K +K L
Sbjct: 303 KDLPSDSIKVNSVKEGYVELYPEKTVGFIIKDKAMPSVKIKINK-DIKAPIKKNEKLGKA 361
Query: 333 ITK 335
K
Sbjct: 362 YIK 364
>gi|229084363|ref|ZP_04216643.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
gi|228698903|gb|EEL51608.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
Length = 416
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 69/323 (21%), Positives = 131/323 (40%), Gaps = 13/323 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ +D TG V+ + + PAS+TK++TA ++ +K + +
Sbjct: 32 QGPNVFGQFAVSIDAKTGDVLYDKNANQHAFPASMTKVLTAILLMEHVKPGE---QFTFS 88
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
E F+ G T+ + AL +L+V SAND++ A+ E + + + F + MN
Sbjct: 89 QPALDQEKSNYQIEFQVGETIDRNTALTILMVLSANDVSYAVGERIGGSIENFAKMMNEK 148
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+K LG +HF+ +G+ HYTTA DMA+++ +P+ + K + +
Sbjct: 149 AKQLGAKDSHFITPNGLHDPNHYTTAYDMAMITR-GVQKYPEILQAMNTKRTTVTTSRQT 207
Query: 202 NTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ + + + G KTGFT + +V + +I V++ A R +
Sbjct: 208 VSIFNKANYFENPYSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRPEIYEDMRQ 266
Query: 259 LLSMGFYNKTDRKKINYI---IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK- 314
+ F T + ++ K Y + S E+ + E N T + A
Sbjct: 267 IADHSFSQFTKQMVLDKNNWHQKASYLDKNIDCELEKSAELMLKKDEGKNVKTVFRAAAV 326
Query: 315 DKES-HFIDFEKITLLKNKITKK 336
+KE + + ++ K
Sbjct: 327 NKEQLYQKGIHRGDVIGTVDVTK 349
>gi|307288894|ref|ZP_07568867.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
TX0109]
gi|306500166|gb|EFM69510.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
TX0109]
gi|315164420|gb|EFU08437.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
TX1302]
Length = 493
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 72/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKEDGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGDQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + VP S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVVPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|315031813|gb|EFT43745.1| putative beta-lactamase [Enterococcus faecalis TX0017]
Length = 493
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 72/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + VP S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVVPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--ILLNSTVQAPKVAYQEVK 400
>gi|170686750|ref|ZP_02877970.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0465]
gi|254682564|ref|ZP_05146425.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. CNEVA-9066]
gi|170669273|gb|EDT20016.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0465]
Length = 428
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 72/301 (23%), Positives = 128/301 (42%), Gaps = 15/301 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + T +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 37 VAPPPKEGPNVFSQFATTIDVKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTK----- 91
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 92 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 151
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ HYTT DMA+++ +P+ + K
Sbjct: 152 FANMMNERAKQLGATDSHFVTPNGLHDPNHYTTPYDMAMITR-GVQKYPEILQAMNTKRT 210
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 211 TVTTSRQTVSIFNKSTYFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 269
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E+ N
Sbjct: 270 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEVKNVK 329
Query: 308 T 308
T
Sbjct: 330 T 330
>gi|115352221|ref|YP_774060.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria AMMD]
gi|172061088|ref|YP_001808740.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria MC40-6]
gi|115282209|gb|ABI87726.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Burkholderia ambifaria AMMD]
gi|171993605|gb|ACB64524.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria MC40-6]
Length = 384
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 9/248 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D NTG + + AS++KLMTA VV
Sbjct: 122 TPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDAKSPMT---DQL 178
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 179 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 238
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKG 197
+K+LG++ THF N+ G+ + ++ARD+ + Q+ K
Sbjct: 239 AKAKSLGMNDTHFENSTGL-SSSNVSSARDLVKMVNAAYQYPMIRQFSTDRTYDVYTGKR 297
Query: 198 KKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N+ A+ G KTGF +G +V A + ++ V+L + + +R
Sbjct: 298 NLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRFA 357
Query: 255 VSASLLSM 262
++ L +
Sbjct: 358 DASRLRNW 365
>gi|323940796|gb|EGB36984.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E482]
Length = 337
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 10/245 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI N+PD AS++KLMTA VV L I+ +
Sbjct: 23 PEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQT 82
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + S ++ + L L ++ S N A ++A K F++ MN +K
Sbjct: 83 PE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAK 139
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGK 198
+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 140 SLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTL 198
Query: 199 KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN V KTGFT A+G +V + ++ + V++ A + T ++
Sbjct: 199 PFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADAS 258
Query: 258 SLLSM 262
L +
Sbjct: 259 RLRTW 263
>gi|182416870|ref|ZP_02948256.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
gi|237667877|ref|ZP_04527861.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182379332|gb|EDT76831.1| D-alanyl-D-alanine carboxypeptidase [Clostridium butyricum 5521]
gi|237656225|gb|EEP53781.1| putative D-alanyl-D-alanine carboxypeptidase DacB [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 300
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 69/286 (24%), Positives = 124/286 (43%), Gaps = 34/286 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET-----------------------NKLPYYTLLDTN 37
M++ + I ++ +L ++F + + LD
Sbjct: 1 MKKGIKISSILLLCSLFVQILSVDAYGYINYGNISYSYNEKSENKNLRVNARCAIALDKE 60
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
+ V+ E AS TK++T+ + L P+TISK AS S +K
Sbjct: 61 SHQVLYEQNAYEIVPMASTTKILTSLIAIEQDD-----LNAPVTISKKASSIRGSKVGYK 115
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+ +TL + L+ KS ND A+AIAE + + + F + MN+ ++ +G+ +HF + HG
Sbjct: 116 ENEVITLKELIFGLMFKSGNDAAIAIAEHIGGSVEGFAEIMNHYARGIGILDSHFESPHG 175
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK---KYPNTNWAVGTFLGAD 214
+ HY++A D+A+L+ + + K Y N N + GA+
Sbjct: 176 LDSSQHYSSAYDLALLTCKGMDYDLFREVVGSKSISKDKYNFTRDYNNINKILWKIPGAN 235
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
G+KTG+T +G +V+S ++ +I V+L D R V+ +
Sbjct: 236 GVKTGYTGQAGKCLVSSVNNNNKDIIIVVLNCPD---RWNVTDKIY 278
>gi|29377583|ref|NP_816737.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis V583]
gi|227554548|ref|ZP_03984595.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis HH22]
gi|229548016|ref|ZP_04436741.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis ATCC
29200]
gi|312905434|ref|ZP_07764548.1| putative beta-lactamase [Enterococcus faecalis TX0635]
gi|312953223|ref|ZP_07772069.1| putative beta-lactamase [Enterococcus faecalis TX0102]
gi|12188896|emb|CAC21495.1| DD-carboxypeptidase [Enterococcus faecalis]
gi|29345050|gb|AAO82807.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis V583]
gi|227176346|gb|EEI57318.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis HH22]
gi|229306892|gb|EEN72888.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis ATCC
29200]
gi|310628840|gb|EFQ12123.1| putative beta-lactamase [Enterococcus faecalis TX0102]
gi|310631163|gb|EFQ14446.1| putative beta-lactamase [Enterococcus faecalis TX0635]
gi|315152792|gb|EFT96808.1| putative beta-lactamase [Enterococcus faecalis TX0031]
gi|315159373|gb|EFU03390.1| putative beta-lactamase [Enterococcus faecalis TX0312]
gi|315161196|gb|EFU05213.1| putative beta-lactamase [Enterococcus faecalis TX0645]
gi|315573276|gb|EFU85467.1| putative beta-lactamase [Enterococcus faecalis TX0309B]
gi|315577112|gb|EFU89303.1| putative beta-lactamase [Enterococcus faecalis TX0630]
gi|315581150|gb|EFU93341.1| putative beta-lactamase [Enterococcus faecalis TX0309A]
gi|323479056|gb|ADX78495.1| D-alanyl-D-alanine carboxypeptidase family protein [Enterococcus
faecalis 62]
Length = 493
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 72/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + VP S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVVPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|327393222|dbj|BAK10644.1| penicillin-binding protein 7 precursor PbpG [Pantoea ananatis
AJ13355]
Length = 315
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 54/280 (19%), Positives = 106/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
+R L+ +A+ + + + A ++D +G + ++PD
Sbjct: 5 IRFSLLTLALLVSGQVVSLPAQATTTLSQMAPIAQPQIASGSALIVDLTSGKTLFSSHPD 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV + M+T I+ + S K S ++ + L
Sbjct: 65 RVRPIASITKLMTAMVVLDAHQPMNEMVTVDISQTPE---MRGVFSRVKLNSQISRRSML 121
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A + F++ MN ++ LG++ TH++ G+ + ++A
Sbjct: 122 MLALMSSENRAAASLAHAYPGGYNAFIKAMNAKARALGMNHTHYVEPTGL-SIQNVSSAE 180
Query: 169 DMAILSWRIKTDF---PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADG---MKTGFTC 222
D+ L + + P N + KTG+T
Sbjct: 181 DLVKLLKATREYPLLGELSTTKEETAVFTHPSYALPFRNTNHLVYKNGWHIQLTKTGYTD 240
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + ++ + V+L A + T + L
Sbjct: 241 EAGHCLVMRTMIKNRPVALVVLDAFGKYTHFADANRLRDW 280
>gi|107028687|ref|YP_625782.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
cenocepacia AU 1054]
gi|116690154|ref|YP_835777.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
cenocepacia HI2424]
gi|170733486|ref|YP_001765433.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
cenocepacia MC0-3]
gi|105897851|gb|ABF80809.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Burkholderia cenocepacia AU 1054]
gi|116648243|gb|ABK08884.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Burkholderia cenocepacia HI2424]
gi|169816728|gb|ACA91311.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
cenocepacia MC0-3]
Length = 388
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 9/248 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D N+G + + AS++KLMTA VV
Sbjct: 126 TPDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASISKLMTAMVVLDAKSPMT---DQL 182
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 183 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 242
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKG 197
+K LG++ THF N+ G+ + ++ARD+ + Q+ + K
Sbjct: 243 AKAKALGMTDTHFENSTGL-SSSNVSSARDLVKMVNAAYQYPMIRQFSTDRTYEVYTGKR 301
Query: 198 KKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N+ A+ G KTGF +G +V A + ++ V+L + + +R
Sbjct: 302 NLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRFA 361
Query: 255 VSASLLSM 262
++ L +
Sbjct: 362 DASRLRNW 369
>gi|291562538|emb|CBL41354.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SS3/4]
Length = 528
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 114/359 (31%), Gaps = 32/359 (8%)
Query: 2 RQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++ ++ ++ P + ++D +TG ++ + P
Sbjct: 7 KKLAKVLCGVLVFTQLGTMQAFARPDWPSDTGIEAEAGAVMDVDTGTMLFGQNSHVEYYP 66
Query: 54 ASLTKLMTAYVVFSFLK-EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
AS+TK++TA VV + S + + G TMT+++ L L+
Sbjct: 67 ASITKILTALVVLEHADLTDTVTYSDKAMNSVEVD--SGNKLSLVAGDTMTVEDCLYALL 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S N A A+AE + + FV MN LG + +HF N G+ TA DM
Sbjct: 125 LASVNQAANALAEHVAGSIPDFVDMMNAKISELGCTESHFANPSGLNNDDQVVTAFDMTK 184
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKK-------YPNTNW--------AVGTFLGADGMK 217
++ ++ P+ + K ++ N + + A K
Sbjct: 185 IAAAAYSN-PKLLEISSAKSWKVGPTTNNPDGASVRNEHRLVITEDTSSEYYCPEAVAGK 243
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
TG+ +G +V + + +++VIL SLL G +
Sbjct: 244 TGYLLKAGNTLVTYGEKDGRRVVSVILKG-SPRQYFIDGKSLLQFGLNRFQNVDIAENET 302
Query: 278 KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE----AKDKESHFIDFEKITLLKNK 332
+ ++ + + A+ D +
Sbjct: 303 RYVTGEDQVDVNGTSYAPSDLAIQTGKKITLPKDATFADAELSLGAVPDGAPEGTVGVL 361
>gi|171320025|ref|ZP_02909096.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria MEX-5]
gi|171094718|gb|EDT39761.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria MEX-5]
Length = 370
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 53/248 (21%), Positives = 97/248 (39%), Gaps = 9/248 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D NTG + + AS++KLMTA VV
Sbjct: 108 TPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDSKSPMT---DQL 164
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 165 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 224
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKG 197
+K LG++ THF N+ G+ + ++ARD+ + Q+ K
Sbjct: 225 AKAKTLGMNDTHFENSTGL-SSSNVSSARDLVKMVNAAYQYPMIRQFSTDRTYDVYTGKR 283
Query: 198 KKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N+ A+ G KTGF +G +V A + ++ V+L + + +R
Sbjct: 284 NLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRFA 343
Query: 255 VSASLLSM 262
+A L +
Sbjct: 344 DAARLRNW 351
>gi|329941806|ref|ZP_08291071.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
M045]
gi|329299523|gb|EGG43423.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
M045]
Length = 398
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 49/258 (18%), Positives = 95/258 (36%), Gaps = 14/258 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P + + D ++G V+A + P PAS K + A V L
Sbjct: 65 PGAPAVPEVSALSWLVADADSGDVLAAHDAHRPLPPASTLKALFALTVLPALPADARHTV 124
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
++ P S+ L + S+ + AV + ++ + +
Sbjct: 125 DE---TELRGIGPGSSLVGVAEGLTYTVADLWRGVFLSSGNDAVHVLAAMNGGLEATTRR 181
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
M + ++ LG TH ++ G + G ++A D+A+ D + +
Sbjct: 182 MRDKARALGARDTHVLSPDGYDRPGQVSSAYDLAVFGRAGLHDPDFARYCATPEAYFPGY 241
Query: 198 ---KKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG--A 246
NTN V + G G+K G+T +G ++A+A +G ++L+ +L +
Sbjct: 242 GQPYGIQNTNRLLTGADGVAPYPGLIGVKNGYTSGAGNTLIAAARRGGRTLVVTVLHPRS 301
Query: 247 LDRNTRNKVSASLLSMGF 264
+ + +LL GF
Sbjct: 302 GGGLQVYEEARALLDWGF 319
>gi|170703460|ref|ZP_02894228.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria IOP40-10]
gi|170131628|gb|EDT00188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria IOP40-10]
Length = 370
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 9/248 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D NTG + + AS++KLMTA VV
Sbjct: 108 TPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDAKSPMT---DQL 164
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 165 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 224
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKG 197
+K+LG++ THF N+ G+ + ++ARD+ + Q+ K
Sbjct: 225 AKAKSLGMNDTHFENSTGL-SSSNVSSARDLVKMVNAAYQYPMIRQFSTDRTYDVYTGKR 283
Query: 198 KKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N+ A+ G KTGF +G +V A + ++ V+L + + +R
Sbjct: 284 NLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRFA 343
Query: 255 VSASLLSM 262
++ L +
Sbjct: 344 DASRLRNW 351
>gi|293385132|ref|ZP_06630958.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
R712]
gi|293389105|ref|ZP_06633577.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
S613]
gi|312906684|ref|ZP_07765684.1| putative beta-lactamase [Enterococcus faecalis DAPTO 512]
gi|312910854|ref|ZP_07769690.1| putative beta-lactamase [Enterococcus faecalis DAPTO 516]
gi|291077609|gb|EFE14973.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
R712]
gi|291081573|gb|EFE18536.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
S613]
gi|310627332|gb|EFQ10615.1| putative beta-lactamase [Enterococcus faecalis DAPTO 512]
gi|311288877|gb|EFQ67433.1| putative beta-lactamase [Enterococcus faecalis DAPTO 516]
Length = 493
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 72/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + VP S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVVPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|300861515|ref|ZP_07107599.1| putative beta-lactamase [Enterococcus faecalis TUSoD Ef11]
gi|312902122|ref|ZP_07761382.1| putative beta-lactamase [Enterococcus faecalis TX0470]
gi|300848976|gb|EFK76729.1| putative beta-lactamase [Enterococcus faecalis TUSoD Ef11]
gi|311290786|gb|EFQ69342.1| putative beta-lactamase [Enterococcus faecalis TX0470]
gi|315026425|gb|EFT38357.1| putative beta-lactamase [Enterococcus faecalis TX2137]
gi|315144141|gb|EFT88157.1| putative beta-lactamase [Enterococcus faecalis TX2141]
gi|315167228|gb|EFU11245.1| putative beta-lactamase [Enterococcus faecalis TX1341]
Length = 493
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 72/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + VP S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVVPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|295102108|emb|CBK99653.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
L2-6]
Length = 441
Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats.
Identities = 65/317 (20%), Positives = 113/317 (35%), Gaps = 18/317 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++++ + A+L Y ++D +TG V+A+ + +PAS+T
Sbjct: 1 MKKYIAALLTALLLLCTALSAGAVGPALTTTEAYCIMDADTGLVLAQQNMNEELHPASIT 60
Query: 58 KLMTAYVVFSFLK--EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K+MT + + LT + + S+ ++G + L +AL ++ S
Sbjct: 61 KVMTLGLACQKAQGNWDGVKLTVSHEDVYSLAGTDSSHIALREGEEVPLQDALYGTMIAS 120
Query: 116 ANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
AND A +AE T + V MN LGL THF N HG+ HYT+ DMA +
Sbjct: 121 ANDGANLLAEYFGGGTIEGGVAAMNAQVAALGLEHTHFANPHGISGDDHYTSCYDMAQIL 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV------------GTFLGADGMKTGFTC 222
T + +++ + G K G+T
Sbjct: 181 RWALTQPGFETIFTRLEMYTMAPTNVQPVTRYFSQQDKMRLSYSRYYIPAIRGSKIGYTN 240
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+ ++ V A Q LI V + + + + +LL F T +
Sbjct: 241 IARYSYVCLAEQNGVRLICVTMQSEMKTDKYNDVRTLLDYAFARYTGYTDLPSQGLTGEV 300
Query: 283 QNLSNEVPNISEEVCTT 299
+ + V
Sbjct: 301 EVVGGGGTLGKVTVTDP 317
>gi|262373941|ref|ZP_06067218.1| D-alanyl-D-alanine endopeptidase [Acinetobacter junii SH205]
gi|262310952|gb|EEY92039.1| D-alanyl-D-alanine endopeptidase [Acinetobacter junii SH205]
Length = 353
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
S + ++D TG V+ AS+TK+MTA V + + T
Sbjct: 102 SNQPSVNARAALVMDAQTGEVLYSKNSSLAVPIASITKVMTAVVTADARLDMSEEI-TLQ 160
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I + S+ST + G TM L ++KS N A A+A + FV MN
Sbjct: 161 QIDFAGAGGKNSSSTLRAGDTMNRAELLLFALMKSENPAAAALARTYPGGRSAFVAAMNA 220
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
++ LG+++T + + G+ + ++ARD+ IL + + + +
Sbjct: 221 KARQLGMTSTRYAESTGL-DPHNVSSARDLGILVS-AASQYGLIRQFSTTPTYDFNLGYR 278
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTG+ +G +V + + V+LGA R
Sbjct: 279 VLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVVVLLGASTSQARTND 338
Query: 256 SASLLSM 262
+ +LL+
Sbjct: 339 ATNLLNW 345
>gi|315150905|gb|EFT94921.1| putative beta-lactamase [Enterococcus faecalis TX0012]
Length = 493
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 72/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITVIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + VP S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVVPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|47095619|ref|ZP_00233227.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
monocytogenes str. 1/2a F6854]
gi|254899730|ref|ZP_05259654.1| hypothetical protein LmonJ_07951 [Listeria monocytogenes J0161]
gi|254913067|ref|ZP_05263079.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254937448|ref|ZP_05269145.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|47016049|gb|EAL06974.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
monocytogenes str. 1/2a F6854]
gi|258610050|gb|EEW22658.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293591068|gb|EFF99402.1| conserved hypothetical protein [Listeria monocytogenes J2818]
Length = 272
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASLTKLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVENGEALYEKKTDKVMPIASLTKLMTAFLVLEAVDNNELSWDERLNLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGADFPKEMNNQAKKL 146
Query: 146 GLSA-THFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201
G+S+ T F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN ++G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|332361675|gb|EGJ39479.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK1056]
Length = 455
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 79/383 (20%), Positives = 148/383 (38%), Gaps = 58/383 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
++ L+++ +A L+++ P + A+ + ++D +TG V+ E
Sbjct: 6 KKKLLLLGIAFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWE 65
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 66 DNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAGV 125
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 126 DYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGAA 185
Query: 160 QH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 186 AVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEET 245
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 246 FETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDGE 305
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKEI 303
R+ +L+ + + +K ++ ++ Q V +E + +
Sbjct: 306 YYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENNV 365
Query: 304 INYNTQMKEAKDKESHFIDFEKI 326
+ +K K S + EK+
Sbjct: 366 LKAENGLKTLSSKISDEMKVEKV 388
>gi|327536245|gb|AEA95079.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
OG1RF]
Length = 493
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 73/388 (18%), Positives = 143/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + A ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQATVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + VP S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVVPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|289824265|ref|ZP_06543860.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
Length = 462
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 59/246 (23%), Positives = 98/246 (39%), Gaps = 12/246 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI N+PD AS+TKLMTA VV + L + +
Sbjct: 23 PEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDA----RLPLDEILKVD 78
Query: 84 -KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
E S + S ++ N L L ++ S N A ++A F++ MN +
Sbjct: 79 ISQTPEMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKA 138
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKG 197
K LG++ T F+ G+ + +TARD+ L + +
Sbjct: 139 KALGMTHTRFVEPTGL-SIHNVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYT 197
Query: 198 KKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ NTN V KTGFT A+G +V + ++ + V++ A + T +
Sbjct: 198 LPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADA 257
Query: 257 ASLLSM 262
+ L +
Sbjct: 258 SRLRTW 263
>gi|312967428|ref|ZP_07781643.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 2362-75]
gi|312287625|gb|EFR15530.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 2362-75]
Length = 310
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 59/258 (22%), Positives = 102/258 (39%), Gaps = 10/258 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + ++D NT VI N+PD AS++KLMTA VV
Sbjct: 23 AVAKMAAATTASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARL 82
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L I+ + S + S ++ + L L ++ S N A ++A
Sbjct: 83 PLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGG 139
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYM 185
K F++ MN +K+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 140 YKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTR 198
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ NTN V KTGFT A+G +V + ++ + V++
Sbjct: 199 EDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258
Query: 245 GALDRNTRNKVSASLLSM 262
A + T ++ L +
Sbjct: 259 DAFGKYTHFADASRLRTW 276
>gi|332097490|gb|EGJ02470.1| D-alanyl-D-alanine endopeptidase [Shigella boydii 3594-74]
Length = 292
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 59/258 (22%), Positives = 102/258 (39%), Gaps = 10/258 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + ++D NT VI N+PD AS++KLMTA VV
Sbjct: 5 AVAKTAAAITASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARL 64
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L I+ + S + S ++ + L L ++ S N A ++A
Sbjct: 65 PLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGG 121
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYM 185
K F++ MN +K+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 122 YKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTR 180
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ NTN V KTGFT A+G +V + ++ + V++
Sbjct: 181 EDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 240
Query: 245 GALDRNTRNKVSASLLSM 262
A + T ++ L +
Sbjct: 241 DAFGKYTHFADASRLRTW 258
>gi|309805391|ref|ZP_07699440.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
LactinV 09V1-c]
gi|308165318|gb|EFO67552.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
LactinV 09V1-c]
Length = 425
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 60/344 (17%), Positives = 115/344 (33%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ +K K T + S+
Sbjct: 59 ALNAKAAIIYDLKSGQIMYAKNITQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSR 118
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNN 140
A + + ++ L +SAN A+ +A ++ + KKFV M
Sbjct: 119 EAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 178
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 179 QLLDWHISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKHLLLEFPQVLD 238
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L K N N + DG+KTG T A+G + ++ ++
Sbjct: 239 TTRISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 297
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ ++ VI+GA + R + L + + N + + P
Sbjct: 298 GRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNSPI 357
Query: 292 ISEEVCTTQKEIINYNT--QMKEAKDKESHFIDFEKITLLKNKI 333
C Q I + ++ + + T + I
Sbjct: 358 NEVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 401
>gi|182437561|ref|YP_001825280.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|178466077|dbj|BAG20597.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
subsp. griseus NBRC 13350]
Length = 311
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 59/271 (21%), Positives = 102/271 (37%), Gaps = 15/271 (5%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A S +++ TG + D + S TK+MTA VV S
Sbjct: 41 AFASTAHAATPPTPKIVAKGGFVMNDGTGKTLFTKSADTRRSTGSTTKIMTALVVLSQKN 100
Query: 71 EKKAMLTTPIT-ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
T S + S++ G T+ L L++ S D A A+A+
Sbjct: 101 VNLKSKVTVQKAYSDYIVKKNASSARLIVGDKPTVGQLLYGLMLPSGCDAAYALADKFGS 160
Query: 130 TEKKFVQ------HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD--------MAILSW 175
+ + + MN T+K+L L THF + G+ +Y+T RD M ++
Sbjct: 161 GKTRAARVKSFIGKMNATAKSLKLKNTHFDSFDGIGGGNNYSTPRDLTKIASKAMKNATF 220
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
R K + + NTN + ++ G G+KTG + + +V +A +
Sbjct: 221 RSIVKTKSTKQKVTTKSGGYRYMSWNNTNKMLSSYSGDIGVKTGSGPTAKYCLVFAATRK 280
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+++I +L + R + L+ GF
Sbjct: 281 GKTVIGTVLTSSSEANRTADAKKLMDYGFKK 311
>gi|221632467|ref|YP_002521688.1| penicillin-binding protein dacF [Thermomicrobium roseum DSM 5159]
gi|221157156|gb|ACM06283.1| penicillin-binding protein dacF precursor [Thermomicrobium roseum
DSM 5159]
Length = 503
Score = 125 bits (314), Expect = 7e-27, Method: Composition-based stats.
Identities = 72/237 (30%), Positives = 110/237 (46%), Gaps = 16/237 (6%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
+G V+ PD P PASLTKL TA + + S+ +
Sbjct: 22 SGRVLYAKEPDAPRAPASLTKLATALTAVE------LAPRDTVLTVQAQDLVGESSMGLR 75
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--------KKFVQHMNNTSKNLGLSA 149
G +TL+ AL L++ S ND A+ IA +L +FV+ MN ++ LGL
Sbjct: 76 PGEQITLEAALYGLLLASGNDAAMTIARNLSGLPGDTPEAAVNRFVKQMNLLAQRLGLER 135
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T F N HG+ Q GH TTARD+A+L+ + P+ Q + TN +G
Sbjct: 136 TTFRNPHGLDQEGHVTTARDLALLTRAVL-QRPELRRILQTPSYDDGVHAVQTTNRLLGR 194
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ G G KTG T A+G++++ +A + ++I V+LG+ R+ + LL F
Sbjct: 195 YPGLIGGKTGITEAAGYSLIEAAERDGTTVIVVVLGS-TRDAWYADAVQLLDYAFAQ 250
>gi|125554420|gb|EAZ00026.1| hypothetical protein OsI_22026 [Oryza sativa Indica Group]
Length = 307
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 12/256 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + ++D NT VI ++PD AS+TKLMTA VV
Sbjct: 27 TPAVTTAAAQPQIASGSAMIVDLNTNKVIYASHPDLVRPIASITKLMTAMVVLDA----H 82
Query: 74 AMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + + E S + S ++ N L L ++ S N A ++A
Sbjct: 83 LPLDEKLKVDISHTPEMKGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYD 142
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHY 187
F++ MN +K LG++ TH++ G+ + +TARD+ L + +
Sbjct: 143 AFIRAMNAKAKALGMNNTHYVEPTGL-SINNVSTARDLTKLLIASKQYPLIGQLSTTREE 201
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ NTN V KTGFT A+G +V + + + V++ A
Sbjct: 202 MATFANPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDA 261
Query: 247 LDRNTRNKVSASLLSM 262
+ T ++ L +
Sbjct: 262 FGKYTHFADASRLRTW 277
>gi|291447193|ref|ZP_06586583.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
15998]
gi|291350140|gb|EFE77044.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
15998]
Length = 449
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 20/278 (7%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + + + D G V+A + PAS K++ A V L+ T
Sbjct: 63 PVLPKGLTARSWIVADAENGDVLAAHNSHWRLPPASTMKMLFADTVLPALQP---TQTHK 119
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+T S+ A S+ K + L L + + + AV + S+ + V M
Sbjct: 120 VTESELAGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGNDAVHVLASMYGGMPQTVAAMQ 179
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY---------MHYFQI 190
++ L T ++ G ++A D+ +++ +
Sbjct: 180 KHAEELQALDTVVVSPDGYDAPRQVSSAYDLTLIARSGMQKKDFREYAATASADFPGEKK 239
Query: 191 KGLEIKGKKYPNTNWAV------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KG + + NTN + + G G+K G+T +G A + + L+ ++
Sbjct: 240 KGKKRDSFEIQNTNRLITGDIGVDPYKGIAGVKNGYTTHAGNTFTGVAERNGKVLLVTVM 299
Query: 245 G--ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
A + + K +A LL GF + ++
Sbjct: 300 NPSAEESHAVYKEAAKLLDWGFAASGKVTPVGELVPPK 337
>gi|239990182|ref|ZP_04710846.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
roseosporus NRRL 11379]
Length = 452
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 20/278 (7%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + + + D G V+A + PAS K++ A V L+ T
Sbjct: 66 PVLPKGLTARSWIVADAENGDVLAAHNSHWRLPPASTMKMLFADTVLPALQP---TQTHK 122
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+T S+ A S+ K + L L + + + AV + S+ + V M
Sbjct: 123 VTESELAGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGNDAVHVLASMYGGMPQTVAAMQ 182
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY---------MHYFQI 190
++ L T ++ G ++A D+ +++ +
Sbjct: 183 KHAEELQALDTVVVSPDGYDAPRQVSSAYDLTLIARSGMQKKDFREYAATASADFPGEKK 242
Query: 191 KGLEIKGKKYPNTNWAV------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KG + + NTN + + G G+K G+T +G A + + L+ ++
Sbjct: 243 KGKKRDSFEIQNTNRLITGDIGVDPYKGIAGVKNGYTTHAGNTFTGVAERNGKVLLVTVM 302
Query: 245 G--ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
A + + K +A LL GF + ++
Sbjct: 303 NPSAEESHAVYKEAAKLLDWGFAASGKVTPVGELVPPK 340
>gi|239943733|ref|ZP_04695670.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
roseosporus NRRL 15998]
Length = 436
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 20/278 (7%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + + + D G V+A + PAS K++ A V L+ T
Sbjct: 50 PVLPKGLTARSWIVADAENGDVLAAHNSHWRLPPASTMKMLFADTVLPALQP---TQTHK 106
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+T S+ A S+ K + L L + + + AV + S+ + V M
Sbjct: 107 VTESELAGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGNDAVHVLASMYGGMPQTVAAMQ 166
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY---------MHYFQI 190
++ L T ++ G ++A D+ +++ +
Sbjct: 167 KHAEELQALDTVVVSPDGYDAPRQVSSAYDLTLIARSGMQKKDFREYAATASADFPGEKK 226
Query: 191 KGLEIKGKKYPNTNWAV------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KG + + NTN + + G G+K G+T +G A + + L+ ++
Sbjct: 227 KGKKRDSFEIQNTNRLITGDIGVDPYKGIAGVKNGYTTHAGNTFTGVAERNGKVLLVTVM 286
Query: 245 G--ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
A + + K +A LL GF + ++
Sbjct: 287 NPSAEESHAVYKEAAKLLDWGFAASGKVTPVGELVPPK 324
>gi|89108951|ref|AP_002731.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
substr. W3110]
gi|162135905|ref|NP_416638.4| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
substr. MG1655]
gi|170081757|ref|YP_001731077.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
substr. DH10B]
gi|218549549|ref|YP_002383340.1| D-alanyl-D-alanine endopeptidase [Escherichia fergusonii ATCC
35469]
gi|218690282|ref|YP_002398494.1| D-alanyl-D-alanine endopeptidase [Escherichia coli ED1a]
gi|238901318|ref|YP_002927114.1| D-alanyl-D-alanine endopeptidase [Escherichia coli BW2952]
gi|254162149|ref|YP_003045257.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B str. REL606]
gi|256017698|ref|ZP_05431563.1| D-alanyl-D-alanine endopeptidase [Shigella sp. D9]
gi|256022181|ref|ZP_05436046.1| D-alanyl-D-alanine endopeptidase [Escherichia sp. 4_1_40B]
gi|297518989|ref|ZP_06937375.1| D-alanyl-D-alanine endopeptidase [Escherichia coli OP50]
gi|306814750|ref|ZP_07448912.1| D-alanyl-D-alanine endopeptidase [Escherichia coli NC101]
gi|307138792|ref|ZP_07498148.1| D-alanyl-D-alanine endopeptidase [Escherichia coli H736]
gi|309788012|ref|ZP_07682621.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae 1617]
gi|161788972|sp|P0AFI5|PBP7_ECOLI RecName: Full=D-alanyl-D-alanine endopeptidase;
Short=DD-endopeptidase; AltName: Full=Penicillin-binding
protein 7; Short=PBP-7; Flags: Precursor
gi|161788973|sp|P0AFI6|PBP7_SHIFL RecName: Full=D-alanyl-D-alanine endopeptidase;
Short=DD-endopeptidase; AltName: Full=Penicillin-binding
protein 7; Short=PBP-7; Flags: Precursor
gi|24052567|gb|AAN43742.1| penicillin-binding protein 7 [Shigella flexneri 2a str. 301]
gi|30041834|gb|AAP17561.1| penicillin-binding protein 7 [Shigella flexneri 2a str. 2457T]
gi|85675248|dbj|BAE76611.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K12 substr.
W3110]
gi|87082054|gb|AAC75195.2| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
substr. MG1655]
gi|169889592|gb|ACB03299.1| D-alanyl-D-alanine endopeptidase [Escherichia coli str. K-12
substr. DH10B]
gi|218357090|emb|CAQ89723.1| D-alanyl-D-alanine endopeptidase [Escherichia fergusonii ATCC
35469]
gi|218427846|emb|CAR08759.2| D-alanyl-D-alanine endopeptidase [Escherichia coli ED1a]
gi|222033896|emb|CAP76637.1| Penicillin-binding protein 7 [Escherichia coli LF82]
gi|238860732|gb|ACR62730.1| D-alanyl-D-alanine endopeptidase [Escherichia coli BW2952]
gi|242377776|emb|CAQ32539.1| penicillin-binding protein 7 [Escherichia coli BL21(DE3)]
gi|253974050|gb|ACT39721.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B str. REL606]
gi|253978218|gb|ACT43888.1| D-alanyl-D-alanine endopeptidase [Escherichia coli BL21(DE3)]
gi|281179227|dbj|BAI55557.1| penicillin-binding protein 7 [Escherichia coli SE15]
gi|305852144|gb|EFM52596.1| D-alanyl-D-alanine endopeptidase [Escherichia coli NC101]
gi|308924146|gb|EFP69644.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae 1617]
gi|309702448|emb|CBJ01774.1| penicillin-binding protein 7 [Escherichia coli ETEC H10407]
gi|312946753|gb|ADR27580.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O83:H1 str. NRG
857C]
gi|323171786|gb|EFZ57430.1| D-alanyl-D-alanine endopeptidase [Escherichia coli LT-68]
gi|323187854|gb|EFZ73150.1| D-alanyl-D-alanine endopeptidase [Escherichia coli RN587/1]
gi|332343912|gb|AEE57246.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UMNK88]
gi|333001268|gb|EGK20836.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri VA-6]
gi|333001918|gb|EGK21484.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-218]
Length = 310
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT VI N+PD
Sbjct: 1 MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 61 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|307273627|ref|ZP_07554855.1| putative beta-lactamase [Enterococcus faecalis TX0855]
gi|306509640|gb|EFM78682.1| putative beta-lactamase [Enterococcus faecalis TX0855]
Length = 493
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 71/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + +P S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|254992369|ref|ZP_05274559.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
J2-064]
Length = 272
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 112/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASLTKLMTA++V + + + + +
Sbjct: 29 LSANATAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGANFPKEMNNQAKKL 146
Query: 146 GLSA-THFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYP 201
G+S+ T F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN ++G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|160935078|ref|ZP_02082464.1| hypothetical protein CLOLEP_03954 [Clostridium leptum DSM 753]
gi|156866531|gb|EDO59903.1| hypothetical protein CLOLEP_03954 [Clostridium leptum DSM 753]
Length = 460
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 80/384 (20%), Positives = 145/384 (37%), Gaps = 50/384 (13%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIA---------ETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ L+++ + + ++IF F + A + + +TG V+ D
Sbjct: 1 MKKKLILLFSCLFLFTSIFAFPASAAGDEGFTIDFETNCNAIFMKNLDTGTVVFTKNADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS-TFKKGSTMTLDNAL 108
PAS TK++T VV +++ T K++ E S+ G TM++ AL
Sbjct: 61 RIEPASTTKILTYIVVSENVEDLDGTTVTLTQELKDSLEGTGSSIANIMVGETMSIYEAL 120
Query: 109 KLLIVKSANDIAVAIAESLC-------------KTEKKFVQHMNNTSKNLGLSATHFMNA 155
L+V S ND AV +A+ + +FVQ MN+ + LG + THF N
Sbjct: 121 NCLMVPSGNDAAVILADYVGGRKNQETGNPEKLSNIDRFVQMMNDKAAELGCTGTHFANP 180
Query: 156 HGVVQHGHYTTARDMAILSWRIK-----TDFPQYMHYFQIKGLEIKGKKYPNTN------ 204
G+ HYTTARDM I++ D ++ + ++ TN
Sbjct: 181 DGLHDENHYTTARDMGIMAEYAMDLPRFMDIVSQTYHIVPATNMQEERRLDTTNLMMLPG 240
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--------RNTRNKVS 256
+ + G+KTG+ +G IV +A + + V +G+ N S
Sbjct: 241 YPDYYYQYVTGIKTGWHDQAGDCIVTTAKAEGYAYLCVAMGSPHVAGQDPVPDNGAMIDS 300
Query: 257 ASLLSMGFYNKTDR------KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+L F T + K + + + + + + + ++ + +
Sbjct: 301 KALYRWAFRTFTLKSIVDMEKPLAEVNLNLAWEKDTLLLVPEKDVTALLPNDVDLNSIVV 360
Query: 311 KEAKDKESHFIDFEKITLLKNKIT 334
E + ES K +L
Sbjct: 361 SEVEKPESVNAPITKGEILGKATL 384
>gi|238794079|ref|ZP_04637696.1| D-alanyl-D-alanine endopeptidase [Yersinia intermedia ATCC 29909]
gi|238726584|gb|EEQ18121.1| D-alanyl-D-alanine endopeptidase [Yersinia intermedia ATCC 29909]
Length = 311
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 59/266 (22%), Positives = 99/266 (37%), Gaps = 15/266 (5%)
Query: 8 IAMAMLSNIFPFLS-----IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
I++ L+ ++ ++D T VI N D AS+TKLMTA
Sbjct: 19 ISVIPLATASGGMAEIKGKAPLELASGSAMVVDLQTNKVIYANNADEVVPIASITKLMTA 78
Query: 63 YVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
VV K L I++ E S + S ++ + L L ++ S N A
Sbjct: 79 MVVLDA----KLPLDEIISVDIHQTKEMKGVFSRVRVNSEISRKDMLLLALMSSENRAAA 134
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
++A F++ MN +K+LG++ T ++ G+ T +L +
Sbjct: 135 SLAHHYPGGYNAFIKAMNVKAKSLGMTKTRYVEPTGLSIDNVSTARDLTKLLMATKQYPL 194
Query: 182 PQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGD 236
+ K + Y NTN V KTGFT +G + + G+
Sbjct: 195 IGQLSTTTEKMATFRDPNYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGN 254
Query: 237 QSLIAVILGALDRNTRNKVSASLLSM 262
+ + V+L A + T + L S
Sbjct: 255 RPVALVVLDAFGKYTHFADANRLRSW 280
>gi|206560567|ref|YP_002231332.1| D-alanyl-D-alanine endopeptidase [Burkholderia cenocepacia J2315]
gi|198036609|emb|CAR52506.1| D-alanyl-D-alanine endopeptidase (penicillin-binding protein
precursor) [Burkholderia cenocepacia J2315]
Length = 388
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 9/248 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D N+G + + AS++KLMTA VV
Sbjct: 126 TPDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASISKLMTAMVVLDSKSPMT---DQL 182
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 183 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 242
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKG 197
+K+LG++ THF N+ G+ + ++ARD+ + Q+ + K
Sbjct: 243 AKAKSLGMTDTHFENSTGL-SSSNVSSARDLVKMVNAAYQYPMIRQFSTDRTYEVYTGKR 301
Query: 198 KKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N+ A+ G KTGF +G +V A + ++ V+L + + +R
Sbjct: 302 NLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRFA 361
Query: 255 VSASLLSM 262
++ L +
Sbjct: 362 DASRLRNW 369
>gi|315653180|ref|ZP_07906105.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners ATCC
55195]
gi|315489545|gb|EFU79182.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners ATCC
55195]
Length = 429
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 116/344 (33%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ + K T + S+
Sbjct: 63 ALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTVYLTLKAINAGKISWQTKVMPSR 122
Query: 85 NASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
A + T+ + +++SAN A+ +A ++ + KKFV M
Sbjct: 123 EAIAVSKNPEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 182
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 183 QLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLD 242
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L+ K K N N + DG+KTG T A+G + ++ ++
Sbjct: 243 TTRISKLDFLDGRKTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 301
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ +I VI+GA R + L + + N + + P
Sbjct: 302 GRRIITVIIGARHLNGSDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNRPI 361
Query: 292 ISEEVCTTQKEIINYNT--QMKEAKDKESHFIDFEKITLLKNKI 333
C Q I + ++ + + T + I
Sbjct: 362 NEVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 405
>gi|238920707|ref|YP_002934222.1| D-alanyl-D-alanine endopeptidase [Edwardsiella ictaluri 93-146]
gi|238870276|gb|ACR69987.1| D-alanyl-D-alanine endopeptidase [Edwardsiella ictaluri 93-146]
Length = 309
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 58/254 (22%), Positives = 98/254 (38%), Gaps = 12/254 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
L T ++D N VI ++PD AS+TKLMTA V
Sbjct: 32 AAAELRAPLTLASGSAMVVDLNNHQVIYASHPDIQVPIASITKLMTAMVTLDAHP----N 87
Query: 76 LTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L I + + ++ S + GS +T L L ++ S N A +A F
Sbjct: 88 LDEVIAVDIHRTKELKGVFSRVRVGSELTRRQMLLLALMSSENRAAATLAHHYPGGYDAF 147
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGL 193
++ MN ++ LG++ TH++ G+ + ++ARD+ L K + + + +
Sbjct: 148 IRAMNAKARALGMTRTHYVEPTGL-SPDNVSSARDLVKLLQAAKGYPLIGELSTTETRSV 206
Query: 194 EIKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
Y NTN + KTGFT +G + + G + + V+L A
Sbjct: 207 TFTHPTYTETFNNTNHLLRNDKWDIQMTKTGFTNQAGHCLAMRTVIGGRPVALVVLDAFG 266
Query: 249 RNTRNKVSASLLSM 262
+ T + L
Sbjct: 267 KYTHFADANRLREW 280
>gi|315284191|ref|ZP_07872092.1| beta-lactamase [Listeria marthii FSL S4-120]
gi|313612161|gb|EFR86402.1| beta-lactamase [Listeria marthii FSL S4-120]
Length = 269
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 6/243 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G ++ E D ASLTKLMTA++V + KK + + +
Sbjct: 29 LSAQSAAVFSVENGKMLYEKNADKVMPIASLTKLMTAFLVLEAVDNKKLSWDEQLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++V SAND A + F Q MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLVMSANDAAETLG--DRLEGASFPQKMNNEAKKL 146
Query: 146 GLSA-THFMNAHGVVQHGHY--TTARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKKYP 201
GLS T F++A G+ G +T +D+ +LS ++ + + + + +G K
Sbjct: 147 GLSNKTKFVSASGLDVDGEMAVSTTKDLFLLSSKLISTHSEVLETTSKSSIITEEGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN +G G DG+KTGFT +G+ + +A +G + +I+++L R K + L+
Sbjct: 207 STNDLIGAIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDTDTAEKRFKDTEQLMK 266
Query: 262 MGF 264
+GF
Sbjct: 267 VGF 269
>gi|259909020|ref|YP_002649376.1| D-alanyl-D-alanine endopeptidase [Erwinia pyrifoliae Ep1/96]
gi|224964642|emb|CAX56156.1| Penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase)
[Erwinia pyrifoliae Ep1/96]
Length = 295
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 53/251 (21%), Positives = 96/251 (38%), Gaps = 12/251 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ ++D N+ VI E++PD AS+TKLMT V L
Sbjct: 14 SSAARPAIASGSAMIVDLNSNKVIYESHPDRVRPIASITKLMTVMVTLDA----HLPLDE 69
Query: 79 PITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ + + + S + S ++ N + L ++ S N A ++A F++
Sbjct: 70 MLKVDISHTPQMRGIYSRVRLNSELSRKNMMLLALMSSENRAAASLAHHYPGGYDAFIRA 129
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKG 192
MN ++ LG+S T ++ G+ + +TARD++ L + +
Sbjct: 130 MNAKARALGMSHTRYVEPTGL-SIDNVSTARDLSKLLQATKRYPLIGQLSTTHEDMASFR 188
Query: 193 LEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ NTN V KTGFT +G +V + + + V+L A + T
Sbjct: 189 SPNYTLPFRNTNHLVYRPDWNIQLTKTGFTNEAGHCLVMRTVINQRPVSLVVLDAFGKYT 248
Query: 252 RNKVSASLLSM 262
++ L
Sbjct: 249 HFADASRLRQW 259
>gi|332528109|ref|ZP_08404140.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax
benzoatilyticus JA2]
gi|332112680|gb|EGJ12473.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrivivax
benzoatilyticus JA2]
Length = 353
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 10/245 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
K ++D T ++ + AS+TKLMT +V + L +TI
Sbjct: 99 PLDLKSSVALVVDQETDQILLSKNSNAVLPIASITKLMTGLLVTEAQQP----LDEVLTI 154
Query: 83 SKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+++ + S+S + G+ +T L L ++ S N A A+ FVQ MN
Sbjct: 155 TQDDVDTEKGSHSRLQVGTQLTRGEMLHLALMSSENRAANALGRHYPGGLSAFVQAMNAK 214
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---KGK 198
+K LG+ T ++ G+ + ++ARD+A+L +
Sbjct: 215 AKLLGMHDTRYVEPTGL-SSNNQSSARDLAVLVKAAYQHPILRELSTSTDASVAVGRRQL 273
Query: 199 KYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
++ TN V G KTG+ +G +V A ++LI V+L + + +R +
Sbjct: 274 QFHTTNGLVRNPSWEIGLQKTGYISEAGRCLVMQAQLAGRNLIMVLLDSAGKYSRIGDAE 333
Query: 258 SLLSM 262
+
Sbjct: 334 RIRKW 338
>gi|315154713|gb|EFT98729.1| putative beta-lactamase [Enterococcus faecalis TX0043]
Length = 493
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 71/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + VP ++
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVVPKGNQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|160944238|ref|ZP_02091467.1| hypothetical protein FAEPRAM212_01747 [Faecalibacterium prausnitzii
M21/2]
gi|158444420|gb|EDP21424.1| hypothetical protein FAEPRAM212_01747 [Faecalibacterium prausnitzii
M21/2]
Length = 466
Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats.
Identities = 69/347 (19%), Positives = 123/347 (35%), Gaps = 16/347 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
V ++ + + + + L + +TG I D ASLTKLMTA
Sbjct: 53 LAVAVSAVLPVFAVYPMPVQTATETEAVYLFNADTGKTILNQNADQQKYVASLTKLMTAL 112
Query: 64 VVFSFLKE---KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
++ K+ + + T K+ + + G T+ + L +++ SAND A
Sbjct: 113 LLVESGKDLNGEVTVPTDLTQEFKDIQNANGTTIGLRIGETVRRIDLLNAMLIVSANDAA 172
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
IA + + FVQ MN + LG + T+F AHG+ +G+ +TA+D+A ++ +
Sbjct: 173 SVIAWDVGGSVVGFVQQMNAKAAELGCTGTNFTCAHGLFDYGNVSTAQDLAKIAAACAEN 232
Query: 181 FPQYM------HYFQIKGLEIKGKKYPNTNWAV-----GTFLGADGMKTGFTCASGFNIV 229
+ L ++N + +K GFT +G IV
Sbjct: 233 QTFAQVAGTASYVLPATNLRKAEHTISSSNSLMNSESSNYREYVKWVKGGFTTLAGRCIV 292
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN-YIIKDFYQQNLSNE 288
A A Q + VILG L F + DR ++ +
Sbjct: 293 AFAQQDGHNYGLVILGCDTLEHLFTACDDLFDWAFASFADRPLVDTKTVLTTVDLTKCRT 352
Query: 289 VPNISEEVCTTQKEIINYNTQMKEA-KDKESHFIDFEKITLLKNKIT 334
P++ + + ++ + ES + L
Sbjct: 353 EPSVELYAAAPVSGYGHSDDKVSYSFDLPESVSATVKDGQKLGTATV 399
>gi|325690106|gb|EGD32110.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK115]
Length = 455
Score = 125 bits (313), Expect = 8e-27, Method: Composition-based stats.
Identities = 78/383 (20%), Positives = 147/383 (38%), Gaps = 58/383 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
++ L+++ + L+++ P + A+ + ++D +TG V+ E
Sbjct: 6 KKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVMDGSTGDVVWE 65
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 66 DNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAGV 125
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 126 DYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGAA 185
Query: 160 QH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 186 AISFKGYYNPQNYDNTLSNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEET 245
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 246 FETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDGE 305
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKEI 303
R+ +L+ + + +K ++ ++ Q V +E + +
Sbjct: 306 YYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENNV 365
Query: 304 INYNTQMKEAKDKESHFIDFEKI 326
+ +K K S + EK+
Sbjct: 366 LKAENGLKTLSSKISDEMKVEKV 388
>gi|324993328|gb|EGC25248.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK405]
gi|332362608|gb|EGJ40406.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK49]
Length = 455
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 79/383 (20%), Positives = 148/383 (38%), Gaps = 58/383 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
++ L+++ +A L+++ P + A+ + ++D +TG V+ E
Sbjct: 6 KKKLLLLGIAFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWE 65
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 66 DNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAGV 125
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 126 DYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGAA 185
Query: 160 QH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 186 AVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEET 245
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 246 FETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDGE 305
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKEI 303
R+ +L+ + + +K ++ ++ Q V +E + +
Sbjct: 306 YYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENNV 365
Query: 304 INYNTQMKEAKDKESHFIDFEKI 326
+ +K K S + EK+
Sbjct: 366 LKAENGLKTLSSKISDEMKVEKV 388
>gi|325911591|ref|ZP_08173999.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII
143-D]
gi|325476577|gb|EGC79735.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII
143-D]
Length = 425
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 61/343 (17%), Positives = 116/343 (33%), Gaps = 34/343 (9%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ +K K T + S+
Sbjct: 59 ALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSR 118
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNN 140
A + + ++ L +SAN A+ +A ++ + KKFV M
Sbjct: 119 EAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 178
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 179 QLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLE 238
Query: 187 YFQIKGLEI----KGKKYPNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+I L+ K K N N DG+KTG T A+G + ++ ++
Sbjct: 239 TTRIAKLDFLDGRKTFKMVNWNLMLKGLSQYNETYPVDGLKTGTTDAAGACLASTLVKNG 298
Query: 237 QSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ ++ VI+GA + R + L + + N + + P
Sbjct: 299 RRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNSPIN 358
Query: 293 SEEVCTTQKEIINYNT--QMKEAKDKESHFIDFEKITLLKNKI 333
C Q I + ++ + + T + I
Sbjct: 359 EVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 401
>gi|318604889|emb|CBY26387.1| murein-DD-endopeptidase [Yersinia enterocolitica subsp. palearctica
Y11]
gi|330859412|emb|CBX69757.1| D-alanyl-D-alanine endopeptidase [Yersinia enterocolitica W22703]
Length = 322
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 10/247 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
++D T VI N D AS+TKLMTA VV K L I+
Sbjct: 49 APLELASGSAMVVDLQTNKVIYANNADEVVPIASITKLMTAMVVLDA----KLPLDEIIS 104
Query: 82 IS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ E S + S ++ + L L ++ S N A ++A F+ MN
Sbjct: 105 VDIHQTKEMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFINAMNA 164
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+K+LG++ T ++ G+ + T +L + + K + Y
Sbjct: 165 KAKSLGMTKTRYVEPTGLSINNVSTARDLTKLLIATKQYPLIGQLSTTTEKMATFREPNY 224
Query: 201 ----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
NTN V KTGFT +G + + G++ + V+L A + T
Sbjct: 225 TLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYTHFAD 284
Query: 256 SASLLSM 262
+ L S
Sbjct: 285 ANRLRSW 291
>gi|294779975|ref|ZP_06745355.1| putative beta-lactamase [Enterococcus faecalis PC1.1]
gi|294452956|gb|EFG21378.1| putative beta-lactamase [Enterococcus faecalis PC1.1]
gi|315034829|gb|EFT46761.1| putative beta-lactamase [Enterococcus faecalis TX0027]
gi|315146578|gb|EFT90594.1| putative beta-lactamase [Enterococcus faecalis TX4244]
Length = 493
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 71/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + +P S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|213028272|ref|ZP_03342719.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 239
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 57/226 (25%), Positives = 95/226 (42%), Gaps = 5/226 (2%)
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDMA
Sbjct: 1 NLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMA 60
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVA 230
++ + D P ++ K G + N N + DG+KTG T +G+N+VA
Sbjct: 61 LIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVA 120
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLS 286
SA +G LI+ ++G R S LL+ GF + + + N
Sbjct: 121 SATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTD 180
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++V T + + + +K ++
Sbjct: 181 RASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGTI 226
>gi|307284847|ref|ZP_07565003.1| putative beta-lactamase [Enterococcus faecalis TX0860]
gi|306503106|gb|EFM72363.1| putative beta-lactamase [Enterococcus faecalis TX0860]
Length = 493
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 71/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + +P S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|284800301|ref|YP_003412166.1| hypothetical protein LM5578_0046 [Listeria monocytogenes 08-5578]
gi|284993486|ref|YP_003415254.1| hypothetical protein LM5923_0046 [Listeria monocytogenes 08-5923]
gi|284055863|gb|ADB66804.1| hypothetical protein LM5578_0046 [Listeria monocytogenes 08-5578]
gi|284058953|gb|ADB69892.1| hypothetical protein LM5923_0046 [Listeria monocytogenes 08-5923]
Length = 272
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASLTKLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVENGEALYEKKTDKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLNLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGANFPKEMNNQAKKL 146
Query: 146 GLSA-THFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-KYP 201
G+S+ T F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN +G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|254247777|ref|ZP_04941098.1| Peptidase S11 [Burkholderia cenocepacia PC184]
gi|124872553|gb|EAY64269.1| Peptidase S11 [Burkholderia cenocepacia PC184]
Length = 388
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 51/248 (20%), Positives = 98/248 (39%), Gaps = 9/248 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D N+G + + AS++KLMTA VV
Sbjct: 126 TPDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASISKLMTAMVVLDAKSPMT---DQL 182
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 183 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 242
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKG 197
+K LG++ THF N+ G+ + ++ARD+ + Q+ + K
Sbjct: 243 AKAKALGMTDTHFENSTGL-SSSNVSSARDLVKMVNAAYQYPMIRQFSTDRTYEVYTGKR 301
Query: 198 KKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N+ A+ G KTGF +G +V A + ++ V+L + + +R
Sbjct: 302 NLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRFA 361
Query: 255 VSASLLSM 262
++ L +
Sbjct: 362 DASRLRNW 369
>gi|326778216|ref|ZP_08237481.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus
XylebKG-1]
gi|326658549|gb|EGE43395.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus
XylebKG-1]
Length = 299
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 59/271 (21%), Positives = 102/271 (37%), Gaps = 15/271 (5%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A S +++ TG + D + S TK+MTA VV S
Sbjct: 29 AFASTAHAATPPTPKIVAKGGFVMNDGTGKTLFTKSADTRRSTGSTTKIMTALVVLSQKN 88
Query: 71 EKKAMLTTPIT-ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
T S + S++ G T+ L L++ S D A A+A+
Sbjct: 89 VNLKSKVTVQKAYSDYIVKKNASSARLIVGDKPTVGQLLYGLMLPSGCDAAYALADKFGS 148
Query: 130 TEKKFVQ------HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD--------MAILSW 175
+ + + MN T+K+L L THF + G+ +Y+T RD M ++
Sbjct: 149 GKTRAARVKSFIGKMNATAKSLKLKNTHFDSFDGIGGGNNYSTPRDLTKIASKAMKNATF 208
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
R K + + NTN + ++ G G+KTG + + +V +A +
Sbjct: 209 RSIVKTKSTKQKVTTKSGGYRYMSWNNTNKMLSSYSGDIGVKTGSGPTAKYCLVFAATRK 268
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+++I +L + R + L+ GF
Sbjct: 269 GKTVIGTVLTSSSEANRTADAKKLMDYGFKK 299
>gi|29827852|ref|NP_822486.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
MA-4680]
gi|29604953|dbj|BAC69021.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
avermitilis MA-4680]
Length = 388
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 52/287 (18%), Positives = 95/287 (33%), Gaps = 16/287 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ + D TG V+A + P PAS K + A + L
Sbjct: 64 AGAPEVPNVSALSWLVADAGTGDVLASHDAHRPLPPASTLKTLFALTMLPTLPGGIRHTV 123
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ S +G T + + + + + S ND +A +
Sbjct: 124 AEREL--EGLGDGSSTVGVTEGQTYQVTDLWRGIFLHSGNDAVHVLAS-MNGGWDTTAHQ 180
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-- 195
M ++ LG TH ++ G G ++A D+AI + + Y
Sbjct: 181 MQAKARALGALDTHVVSPDGYDAPGQTSSAYDLAIFGRAGL-NREDFARYCSTVDATFPG 239
Query: 196 --KGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ NTN + + G G+K G+T +G +VA+A +G ++L+ +L
Sbjct: 240 NGGAYEIQNTNRLLTGADGIAPYPGLIGVKNGYTSNAGNTLVAAARRGGRTLVVTVLNPQ 299
Query: 248 DRN--TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ + SLL GF + ++ P+
Sbjct: 300 SGGGLAVYEEARSLLDWGFGAAGRVDPVGSLLSARTVAQAGPATPDA 346
>gi|302553699|ref|ZP_07306041.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
DSM 40736]
gi|302471317|gb|EFL34410.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
DSM 40736]
Length = 436
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 46/289 (15%), Positives = 94/289 (32%), Gaps = 32/289 (11%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFLKEK 72
+ + + + D TG V+A + PAS K++ T F ++
Sbjct: 73 ASGVPVLPKDVSARSWIVADAETGDVLAAHNAHWRLAPASTLKMLFADTLLPKFPRTEKH 132
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
K + + I +S + L L+ AV + ++ + +
Sbjct: 133 KVVPSDLAGIGAGSSMVGIKEDETYTVHDLWLGVFLRSGND------AVHVLSAMNQGVE 186
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
V+ MN ++ L TH ++ G G ++A D+ + + + Y
Sbjct: 187 NTVKEMNQHAEELQALDTHVVSPDGYDAEGQVSSAYDLTLFARSGLQK-KDFREYCSTVS 245
Query: 193 LEI--------------KGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASA 232
+ + + NTN + + G G+K G T +G A
Sbjct: 246 AKFPGQTKKGKKGKTVRESFEIQNTNRLLAGDADLPVYQGIAGVKNGNTTNAGATFTGVA 305
Query: 233 IQGDQSLIAVILGALDR--NTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
+ + L+ ++ N K +A L GF + + ++
Sbjct: 306 ERDGKVLLVTVMNPEKPEHNEVYKETARLFDWGFKAAGKVQPVGELVPP 354
>gi|325694037|gb|EGD35955.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK150]
Length = 455
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 78/383 (20%), Positives = 147/383 (38%), Gaps = 58/383 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
++ L+++ + L+++ P + A+ + ++D +TG V+ E
Sbjct: 6 KKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWE 65
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 66 DNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAGV 125
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 126 DYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGAA 185
Query: 160 QH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 186 AVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEET 245
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 246 FETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDGE 305
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKEI 303
R+ +L+ + + +K ++ ++ Q V +E + +
Sbjct: 306 YYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENNV 365
Query: 304 INYNTQMKEAKDKESHFIDFEKI 326
+ +K K S + EK+
Sbjct: 366 LKAENGLKTLSSKISDEMKVEKV 388
>gi|254827380|ref|ZP_05232067.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258599758|gb|EEW13083.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
Length = 272
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 61/244 (25%), Positives = 111/244 (45%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASLTKLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVENGEALYEKKTDKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLNLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGADFPKEMNNQAKKL 146
Query: 146 GLSA-THFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-KYP 201
G+S+ T F++A G+ G +T +D+ +LS ++ + P+ + + K
Sbjct: 147 GMSSKTTFVSASGLDVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKPTVTTDKGAKLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN +G+ G DG+KTGFT +G+ + +A +G + +I+++L A R K + L+
Sbjct: 207 STNDLLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLME 266
Query: 262 MGFY 265
+GF
Sbjct: 267 VGFK 270
>gi|310767083|gb|ADP12033.1| penicillin-binding protein 7 [Erwinia sp. Ejp617]
Length = 316
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/251 (21%), Positives = 96/251 (38%), Gaps = 12/251 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ ++D N+ VI E++PD AS+TKLMT V L
Sbjct: 35 SSAAQPAIASGSAMIVDLNSNKVIYESHPDRVRPIASITKLMTVMVTLDA----HLPLDE 90
Query: 79 PITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ + + + S + S ++ N + L ++ S N A ++A F++
Sbjct: 91 MLKVDISHTPQMRGIYSRVRLNSELSRKNMMLLALMSSENRAAASLAHHYPGGYDAFIRA 150
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKG 192
MN ++ LG+S T ++ G+ + +TARD++ L + +
Sbjct: 151 MNAKARALGMSHTRYVEPTGL-SIDNVSTARDLSKLLQATKRYPLIGQLSTTHEDMASFR 209
Query: 193 LEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ NTN V KTGFT +G +V + + + V+L A + T
Sbjct: 210 SPNYTLPFRNTNHLVYRPDWNIQLTKTGFTNEAGHCLVMRTVINQRPVSLVVLDAFGKYT 269
Query: 252 RNKVSASLLSM 262
++ L
Sbjct: 270 HFADASRLRQW 280
>gi|227517264|ref|ZP_03947313.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX0104]
gi|227075271|gb|EEI13234.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis TX0104]
Length = 493
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 72/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSYGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + VP S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVVPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|315171194|gb|EFU15211.1| putative beta-lactamase [Enterococcus faecalis TX1342]
Length = 493
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 72/388 (18%), Positives = 143/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + A ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQATVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + +P S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|317124333|ref|YP_004098445.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Intrasporangium calvum DSM 43043]
gi|315588421|gb|ADU47718.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Intrasporangium calvum DSM 43043]
Length = 898
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/283 (18%), Positives = 107/283 (37%), Gaps = 19/283 (6%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ A +++++ Y L D +TG V+A P PAS K +TA +
Sbjct: 105 LAATGLVADVPAGAHRPPPVPDVSYVLADLDTGEVLAAKSPHAWLRPASTLKTLTALALI 164
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ + + + G+ + ++ S+ + A +
Sbjct: 165 P-----RLDPARRVLATSEHEAADGTRVGILAGNRYPVSTLF-DALLLSSANDAAYLLAD 218
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK-------- 178
++ V MN T+ LG T ++ G+ + G +++A D+A++
Sbjct: 219 AAGGYEQTVSLMNETAVGLGAHDTVAVDPSGLDEDGQHSSAYDLALIGRAAMRLPTFRSY 278
Query: 179 ---TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
D + G + + N N +G + GA G+K G T + + +A +
Sbjct: 279 VSKRDAAFPGGTNRATGTVYRSFQIQNINELLGRYPGAIGIKPGRTNRAQHTFIGAATRA 338
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
++LI +G+ + K +A+LL GF N + +++
Sbjct: 339 GRTLIVTQMGSTTGD--WKDTAALLDWGFANADVASPVGVLVE 379
>gi|315172967|gb|EFU16984.1| putative beta-lactamase [Enterococcus faecalis TX1346]
Length = 493
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 71/385 (18%), Positives = 145/385 (37%), Gaps = 63/385 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + VP S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVVPKGSQPTFKLVAG 374
Query: 303 IINYNTQM-KEAKDKESHFIDFEKI 326
+ +T + + + ++++
Sbjct: 375 QVQVDTPLTLLNSTVQPPKVAYQEV 399
>gi|291542985|emb|CBL16095.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus bromii L2-63]
Length = 450
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 68/354 (19%), Positives = 122/354 (34%), Gaps = 23/354 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+II A + + L++ ++G + E D PAS TK+MT
Sbjct: 15 LCIIICSAFTTAGAASYPNDVKTESDSILLVNMDSGQTVYEKDADSKRYPASTTKIMTYI 74
Query: 64 VVFSFL---KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
+ + K + + + +N G +MT + L ++V S ND A
Sbjct: 75 IAVENIADLDNTKIPIKQSVLDVLKNTGSSLANVENHVGKSMTAIDLLYSMMVPSGNDAA 134
Query: 121 VAIAESLCK-TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+ +A+ + + FV+ MN +K LG THF N G+ HYTTARDM ++ T
Sbjct: 135 MVLADYIGEGNVDNFVKLMNEKAKELGCENTHFANPDGLHDPDHYTTARDMYKITTYALT 194
Query: 180 DFPQYMHYFQIKGLEIKGKK-YPNTNW-------AVGTFLGADGMKTGFTCASGFNIVAS 231
TN+ ++ A G+KTG T +G +V +
Sbjct: 195 LPRFEEITNTCTYTCDGDDTALVTTNYLIDANRGGEYYYMYAKGIKTGTTNEAGRCLVTT 254
Query: 232 AIQGDQSLIAVILGALDRNTRNK------VSASLLSMGFYNKTDRKKINYIIKDFYQQ-- 283
A S +A++L A + +A L + +
Sbjct: 255 ASADGYSYMAILLHAPYEEGVTEDYATMTDAADLFRWALTSLEMNTVATSSKPLCEVKVN 314
Query: 284 ---NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
++ + ++ + + E ES +K +++
Sbjct: 315 LAWGKNSTLLYPETDLSAIVPKDCTDENIIIEQDVPESVDAPLDKGSVVGKATI 368
>gi|228477469|ref|ZP_04062105.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius
SK126]
gi|228250904|gb|EEK10092.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus salivarius
SK126]
Length = 448
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 70/358 (19%), Positives = 129/358 (36%), Gaps = 36/358 (10%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++ + E + L+D NTG V+ E D +PAS++K MT Y+VF + +
Sbjct: 29 ITRAAGYTEATEAYRPKSTLLIDGNTGDVLWEENADEVRDPASMSKAMTLYLVFEAMSKG 88
Query: 73 KAMLTTPITISKNAS-----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+ T IT + +N + + S +
Sbjct: 89 EISEDTVITATPTDQAIADIYEISNNKIVAGVDYTVSELITMTAVPSSNVTTVMLANYLT 148
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHG---------------VVQHGHYTTARDMAI 172
K++ MN SK LG++ T + NA G + TTARD+AI
Sbjct: 149 NNDPDKWLDMMNEKSKELGMTNTKWFNASGAVAVAFKGYYSPQRYDNNQTNQTTARDLAI 208
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---------LGADGMKTGFTCA 223
+++ +P + Y + +K + + G DG+KTG +
Sbjct: 209 MTYNFIKKYPDILKYTSKPVVTVKKGTPYEETFETYNYSIPGAKYGIDGVDGLKTGSSPE 268
Query: 224 SGFNIVASAIQGDQSLIAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
FN + + +GDQ +IAVI+G+ R+ +L+ + + + +K ++
Sbjct: 269 GAFNYIDTIKRGDQRMIAVIMGSGDWSDQTGEEIRHTFGNALVEKMYKDFSYKKVLSKGE 328
Query: 278 KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
++ N ++ V + I+ + K T +K K
Sbjct: 329 QEI-DGKKYNVEKDVYATVKKGKDPKISVKDDHIVIDNGLKTVSPNIKATSVKATKVK 385
>gi|332363024|gb|EGJ40811.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK355]
Length = 455
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 78/383 (20%), Positives = 147/383 (38%), Gaps = 58/383 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
++ L+++ + L+++ P + A+ + ++D +TG V+ E
Sbjct: 6 KKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWE 65
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 66 DNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQAIANIYEISNNKIVAGV 125
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 126 DYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGAA 185
Query: 160 QH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 186 AVSFKGYYNPQNYDNTLSNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEET 245
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 246 FDTYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDGE 305
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKEI 303
R+ +L+ + + +K ++ ++ Q V +E + +
Sbjct: 306 YYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENNV 365
Query: 304 INYNTQMKEAKDKESHFIDFEKI 326
+ +K K S + EK+
Sbjct: 366 LKAENGLKTLSSKISDEMKVEKV 388
>gi|297192554|ref|ZP_06909952.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
ATCC 25486]
gi|297151396|gb|EDY62003.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
ATCC 25486]
Length = 461
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/305 (14%), Positives = 94/305 (30%), Gaps = 26/305 (8%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFLKEKKAM 75
+ + + + D +G V+A + PAS K++ T K
Sbjct: 114 APVLPKDVSGRSWIVADAESGEVLASHNAHWRLPPASTMKMLFADTLLPRLPKTTVHKVA 173
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ +S + M L L+ AV + ++ + V
Sbjct: 174 PAELADVGAGSSLVGIKENHTYTVHDMWLGVFLRSGND------AVHVLSAMNGGISRTV 227
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-------- 187
M ++ L T ++ G G ++A D+ +++ +
Sbjct: 228 ADMQAHAEELQALDTKVVSPDGYDAPGQVSSAYDLTLIARSGMQKKDFREYCSTVSADFP 287
Query: 188 -FQIKGLEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
Q KG + K NTN + + G G+K G T +G A + + L+
Sbjct: 288 GEQKKGKKRGTFKIQNTNRLLTGASGISPYKGIAGVKNGSTTHAGSTFTGVAERNGKVLL 347
Query: 241 AVILGALD--RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++ K + LL GF + + ++ + ++ P ++
Sbjct: 348 VTVMNPDSGESQAVYKEAGRLLDWGFAAAGKVQPVGELVPPKSAEPAASLDPQPVKDEGK 407
Query: 299 TQKEI 303
+
Sbjct: 408 DEPAG 412
>gi|257083197|ref|ZP_05577558.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Fly1]
gi|256991227|gb|EEU78529.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Fly1]
Length = 475
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 71/348 (20%), Positives = 135/348 (38%), Gaps = 43/348 (12%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T +
Sbjct: 37 PDGIPKAAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTAT 96
Query: 84 KNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHM 138
+ + SN+ G + LK++ V S+N + +A + + FV M
Sbjct: 97 QKDVDISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLM 156
Query: 139 NNTSKNLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQ 183
N + LG++ T + N G + +TARD+A L++ ++P+
Sbjct: 157 NQKAAELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPE 216
Query: 184 YMHYF-----QIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + + + N++ + G DG+KTG + GFN +A+ Q
Sbjct: 217 ILEITNKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQ 276
Query: 235 GDQSLIAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL--- 285
GD LI VILG R+ +LL + +K ++ + + +
Sbjct: 277 GDFRLIEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLA 336
Query: 286 ---SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
VP S+ + +T + + +K
Sbjct: 337 NDLYGVVPKGSQPTFKLVAGQVQVDTPL--TLLNSTVQAPKVAYQEVK 382
>gi|530915|gb|AAA68436.1| Highly similar to the E.coli YeeC, DacA and DacC products; putative
[Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 281
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 65/244 (26%), Positives = 113/244 (46%), Gaps = 8/244 (3%)
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
K+G +++ + + LIV S ND VA+A+ + + +FV MN+ K L L THF
Sbjct: 1 MFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFE 60
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFLG 212
HG+ G +++A D+A+LS I P++ H + K L G N N +
Sbjct: 61 TVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMH 120
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N +
Sbjct: 121 IDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQI 180
Query: 273 INYIIKD----FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA---KDKESHFIDFEK 325
++ K + + ++ + + + K K+ E+ ++
Sbjct: 181 LHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQQ 240
Query: 326 ITLL 329
+ +
Sbjct: 241 VGEI 244
>gi|262376983|ref|ZP_06070209.1| D-alanyl-D-alanine endopeptidase [Acinetobacter lwoffii SH145]
gi|262308021|gb|EEY89158.1| D-alanyl-D-alanine endopeptidase [Acinetobacter lwoffii SH145]
Length = 353
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 63/247 (25%), Positives = 103/247 (41%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
S + ++D TG V+ + + AS+TKLMTA V+ + T
Sbjct: 102 SNQPSVNARAALVMDAQTGEVLFSKNTNTAYPIASITKLMTAVVISDARLNMSEKI-TLQ 160
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ S S+ST + G +M AL ++KS N A A+A + F+ MN
Sbjct: 161 QADFSCSGCKSSSSTLRAGDSMNRAEALLFALMKSENPAAAALARTYPGGRSAFIAKMNA 220
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
+K LG+++T FM + G+ G+ +ARD+ IL + + + +
Sbjct: 221 KAKELGMNSTRFMESTGL-HPGNMASARDLGIL-VNTASQYGLIRQFSTTPSYDFNLGYR 278
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTGF +G +V ++ + V+LGA R
Sbjct: 279 VLKSNNTNALVRNGGWNINISKTGFINEAGRCVVMHTTLNNRPVAVVLLGANSSQARTND 338
Query: 256 SASLLSM 262
+ L+S
Sbjct: 339 ATRLMSW 345
>gi|329919680|ref|ZP_08276658.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN
1401G]
gi|328937332|gb|EGG33756.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN
1401G]
Length = 423
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 114/344 (33%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ + K T + S+
Sbjct: 57 ALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAINAGKISWQTKVMPSR 116
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNN 140
A + + ++ L +SAN A+ +A ++ + KKFV M
Sbjct: 117 EAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 176
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 177 QLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLD 236
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L K N N + DG+KTG T A+G + ++ ++
Sbjct: 237 TTRISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 295
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ ++ VI+GA + R + L + + N + + P
Sbjct: 296 GRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNRPI 355
Query: 292 ISEEVCTTQKEIINYNT--QMKEAKDKESHFIDFEKITLLKNKI 333
C Q I + ++ + + T + I
Sbjct: 356 NEVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 399
>gi|307276651|ref|ZP_07557769.1| putative beta-lactamase [Enterococcus faecalis TX2134]
gi|306506761|gb|EFM75913.1| putative beta-lactamase [Enterococcus faecalis TX2134]
Length = 493
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 72/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGTFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + VP S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVVPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|307292145|ref|ZP_07572011.1| putative beta-lactamase [Enterococcus faecalis TX0411]
gi|306496798|gb|EFM66349.1| putative beta-lactamase [Enterococcus faecalis TX0411]
Length = 493
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 71/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + +P S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGSQPTFKLVSG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|260844741|ref|YP_003222519.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O103:H2
str. 12009]
gi|257759888|dbj|BAI31385.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O103:H2
str. 12009]
Length = 310
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L P A ++D NT VI N+PD
Sbjct: 1 MPKFRVSLFSLALMLAVPLAPQAVAKTAAATAASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 61 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|215487356|ref|YP_002329787.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O127:H6 str.
E2348/69]
gi|215265428|emb|CAS09829.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O127:H6 str.
E2348/69]
Length = 310
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L P A ++D NT VI N+PD
Sbjct: 1 MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTVSQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 61 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|195935505|ref|ZP_03080887.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
EC4024]
gi|209919593|ref|YP_002293677.1| D-alanyl-D-alanine endopeptidase [Escherichia coli SE11]
gi|218554700|ref|YP_002387613.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI1]
gi|218695746|ref|YP_002403413.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 55989]
gi|218699256|ref|YP_002406885.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI39]
gi|218705663|ref|YP_002413182.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UMN026]
gi|254794027|ref|YP_003078864.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
TW14359]
gi|260856108|ref|YP_003229999.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O26:H11
str. 11368]
gi|260868837|ref|YP_003235239.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O111:H-
str. 11128]
gi|307311286|ref|ZP_07590930.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
coli W]
gi|209912852|dbj|BAG77926.1| penicillin-binding protein 7 [Escherichia coli SE11]
gi|218352478|emb|CAU98255.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 55989]
gi|218361468|emb|CAQ99057.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI1]
gi|218369242|emb|CAR16999.1| D-alanyl-D-alanine endopeptidase [Escherichia coli IAI39]
gi|218432760|emb|CAR13654.1| D-alanyl-D-alanine endopeptidase [Escherichia coli UMN026]
gi|226237489|dbj|BAH47011.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O55:H7]
gi|254593427|gb|ACT72788.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
TW14359]
gi|257754757|dbj|BAI26259.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O26:H11
str. 11368]
gi|257765193|dbj|BAI36688.1| D-alanyl-D-alanine endopeptidase PbpG [Escherichia coli O111:H-
str. 11128]
gi|306908792|gb|EFN39289.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
coli W]
gi|320641200|gb|EFX10678.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
G5101]
gi|320646588|gb|EFX15499.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H- str.
493-89]
gi|320651843|gb|EFX20218.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H- str. H
2687]
gi|320663173|gb|EFX30482.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O55:H7 str. USDA
5905]
gi|320667924|gb|EFX34827.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
LSU-61]
gi|323152361|gb|EFZ38650.1| D-alanyl-D-alanine endopeptidase [Escherichia coli EPECa14]
gi|323161762|gb|EFZ47643.1| D-alanyl-D-alanine endopeptidase [Escherichia coli E128010]
gi|323184242|gb|EFZ69619.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1357]
gi|323377974|gb|ADX50242.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
coli KO11]
gi|332092625|gb|EGI97696.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae 155-74]
Length = 310
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L P A ++D NT VI N+PD
Sbjct: 1 MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 61 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|261340569|ref|ZP_05968427.1| beta-lactamase [Enterobacter cancerogenus ATCC 35316]
gi|288316977|gb|EFC55915.1| beta-lactamase [Enterobacter cancerogenus ATCC 35316]
Length = 306
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/259 (22%), Positives = 101/259 (38%), Gaps = 12/259 (4%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
M + ++D NT VI ++PD AS+TKLMTA VV
Sbjct: 23 VMAKTPAVTTAAQPQIASGSAMIVDLNTNKVIYASHPDLVRPIASITKLMTAMVVLDA-- 80
Query: 71 EKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ L + + + E S + S ++ N L L ++ S N A ++A
Sbjct: 81 --RLPLDEKLKVDISHTPEMKGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPG 138
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQY 184
F++ MN +K+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 139 GYDAFIRAMNAKAKSLGMTNTRFVEPTGL-SIHNVSTARDLTKLLVASKRYPLLGQLSTT 197
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ NTN V KTGFT A+G +V + + + V+
Sbjct: 198 REDMATFSNPPYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVV 257
Query: 244 LGALDRNTRNKVSASLLSM 262
+ A + T ++ L +
Sbjct: 258 MDAFGKYTHFADASRLRTW 276
>gi|82777384|ref|YP_403733.1| D-alanyl-D-alanine endopeptidase [Shigella dysenteriae Sd197]
gi|157159398|ref|YP_001463481.1| D-alanyl-D-alanine endopeptidase [Escherichia coli E24377A]
gi|161485895|ref|NP_708035.2| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2a str. 301]
gi|161486468|ref|NP_837752.2| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2a str. 2457T]
gi|170679983|ref|YP_001742990.1| D-alanyl-D-alanine endopeptidase [Escherichia coli SMS-3-5]
gi|194436191|ref|ZP_03068293.1| penicillin-binding protein 7 [Escherichia coli 101-1]
gi|253772938|ref|YP_003035769.1| D-alanyl-D-alanine endopeptidase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|293415418|ref|ZP_06658061.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B185]
gi|300818866|ref|ZP_07099071.1| beta-lactamase [Escherichia coli MS 107-1]
gi|300924491|ref|ZP_07140460.1| beta-lactamase [Escherichia coli MS 182-1]
gi|300929309|ref|ZP_07144783.1| beta-lactamase [Escherichia coli MS 187-1]
gi|300936551|ref|ZP_07151460.1| beta-lactamase [Escherichia coli MS 21-1]
gi|300955844|ref|ZP_07168185.1| beta-lactamase [Escherichia coli MS 175-1]
gi|301021100|ref|ZP_07185141.1| beta-lactamase [Escherichia coli MS 69-1]
gi|301325244|ref|ZP_07218762.1| beta-lactamase [Escherichia coli MS 78-1]
gi|301644151|ref|ZP_07244159.1| beta-lactamase [Escherichia coli MS 146-1]
gi|331642758|ref|ZP_08343893.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli H736]
gi|331647786|ref|ZP_08348878.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli M605]
gi|331653562|ref|ZP_08354563.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli M718]
gi|332278712|ref|ZP_08391125.1| conserved hypothetical protein [Shigella sp. D9]
gi|405864|gb|AAA60496.1| yohB [Escherichia coli]
gi|81241532|gb|ABB62242.1| penicillin-binding protein 7 [Shigella dysenteriae Sd197]
gi|157081428|gb|ABV21136.1| penicillin-binding protein 7 [Escherichia coli E24377A]
gi|170517701|gb|ACB15879.1| penicillin-binding protein 7 [Escherichia coli SMS-3-5]
gi|194424919|gb|EDX40904.1| penicillin-binding protein 7 [Escherichia coli 101-1]
gi|253323982|gb|ACT28584.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
coli 'BL21-Gold(DE3)pLysS AG']
gi|260448770|gb|ACX39192.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
coli DH1]
gi|281601593|gb|ADA74577.1| D-alanyl-D-alanine endopeptidase precursor [Shigella flexneri
2002017]
gi|291433066|gb|EFF06045.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B185]
gi|300317311|gb|EFJ67095.1| beta-lactamase [Escherichia coli MS 175-1]
gi|300398281|gb|EFJ81819.1| beta-lactamase [Escherichia coli MS 69-1]
gi|300419300|gb|EFK02611.1| beta-lactamase [Escherichia coli MS 182-1]
gi|300458314|gb|EFK21807.1| beta-lactamase [Escherichia coli MS 21-1]
gi|300462728|gb|EFK26221.1| beta-lactamase [Escherichia coli MS 187-1]
gi|300528485|gb|EFK49547.1| beta-lactamase [Escherichia coli MS 107-1]
gi|300847904|gb|EFK75664.1| beta-lactamase [Escherichia coli MS 78-1]
gi|301077449|gb|EFK92255.1| beta-lactamase [Escherichia coli MS 146-1]
gi|315136767|dbj|BAJ43926.1| D-alanyl-D-alanine endopeptidase [Escherichia coli DH1]
gi|320196004|gb|EFW70628.1| Murein-DD-endopeptidase [Escherichia coli WV_060327]
gi|323961642|gb|EGB57247.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H489]
gi|323977677|gb|EGB72763.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TW10509]
gi|324114448|gb|EGC08417.1| D-alanyl-D-alanine carboxypeptidase [Escherichia fergusonii B253]
gi|325497949|gb|EGC95808.1| D-alanyl-D-alanine endopeptidase [Escherichia fergusonii ECD227]
gi|330911967|gb|EGH40477.1| murein-DD-endopeptidase [Escherichia coli AA86]
gi|331039556|gb|EGI11776.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli H736]
gi|331043510|gb|EGI15648.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli M605]
gi|331048411|gb|EGI20487.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli M718]
gi|332101064|gb|EGJ04410.1| conserved hypothetical protein [Shigella sp. D9]
gi|744172|prf||2014253AF yohB gene
Length = 313
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|329576780|gb|EGG58273.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
TX1467]
Length = 493
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 71/388 (18%), Positives = 142/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP---------------------YYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPEAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ QGD LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + +P S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|309810092|ref|ZP_07703938.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN
2503V10-D]
gi|308169591|gb|EFO71638.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners SPIN
2503V10-D]
Length = 425
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 119/344 (34%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ +K K T + S+
Sbjct: 59 ALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSR 118
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNN 140
A + + ++ L +SAN A+ +A ++ + KKFV M
Sbjct: 119 EAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 178
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 179 QLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSAGDMGILIKHLLLEFPQVLD 238
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L K N N + DG+KTG T A+G + ++ ++
Sbjct: 239 TTRISKLNFPDGRNTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 297
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTD--RKKINYIIKDFYQQNLSNEV 289
+ ++ VI+GA + R + L + + N + K+ + S+ +
Sbjct: 298 GRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKSSSI 357
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ + I+ ++ + + T + I
Sbjct: 358 NEVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 401
>gi|284043333|ref|YP_003393673.1| serine-type D-Ala-D-Ala carboxypeptidase [Conexibacter woesei DSM
14684]
gi|283947554|gb|ADB50298.1| Serine-type D-Ala-D-Ala carboxypeptidase [Conexibacter woesei DSM
14684]
Length = 434
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 61/319 (19%), Positives = 123/319 (38%), Gaps = 9/319 (2%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
P + + ++G + AS TK+MTA V L +
Sbjct: 52 PAPPKLSAPAAAVFEVSSGQPLYGVDAGDRRLIASTTKIMTALVAVEKLPLGRV-----C 106
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
T A+ + ++G M++ + L+ L++ SAND A +A + F+ MN
Sbjct: 107 TAPAYAATPAETQIGLRQGERMSVRDLLRALMLPSANDAAATLAVCAAGSRGAFIDLMNA 166
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH---YFQIKGLEIKG 197
++ L L+ THF G+ +Y+TA D+A L ++ +
Sbjct: 167 KARELRLADTHFATPVGLDSPANYSTAADLARLGIALRQKPFLARTVDLRSAVLRTGAFP 226
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ N N V + DG+KTG T A+G+ +VAS+ + S +A ++G + R+ +
Sbjct: 227 RTVVNRNGLVQSVPWVDGVKTGHTNAAGYLLVASSTRDGLSFVAAVMGTPSESARDADAL 286
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA-KDK 316
+LL + + + I + +E++ + ++ A +
Sbjct: 287 ALLRWAYATHRIATPVKSGAVFARAKLKYRPEDKIDLVATRSVRELVRRDQRVVVAVRAP 346
Query: 317 ESHFIDFEKITLLKNKITK 335
+ + ++ + +
Sbjct: 347 DELQGPLPRNAVVGSLTVR 365
>gi|213419096|ref|ZP_03352162.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 243
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 82/197 (41%), Gaps = 5/197 (2%)
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+K LGL+ T F HG+ G ++TARDMA+L + D P + K +
Sbjct: 1 YAKRLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQ 60
Query: 201 PNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
PN N T L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L
Sbjct: 61 PNRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 120
Query: 260 LSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
L+ GF I + + + + + T N + +
Sbjct: 121 LTWGFRFFETVTPIKPDATFVTQRVWFGDKREVNLGAGDAGSVTIPRGQLKNLKASFTLN 180
Query: 316 KESHFIDFEKITLLKNK 332
+ +K ++
Sbjct: 181 EPQLTAPLKKGQVVGTI 197
>gi|146312376|ref|YP_001177450.1| D-alanyl-D-alanine endopeptidase [Enterobacter sp. 638]
gi|145319252|gb|ABP61399.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Enterobacter sp. 638]
Length = 315
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 101/259 (38%), Gaps = 12/259 (4%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + ++D NT VI ++PD AS+TKLMTA VV
Sbjct: 23 AIAKTPALTTAAQPEIASGSAMIVDLNTNKVIYSSHPDLVRPIASITKLMTAMVVLDA-- 80
Query: 71 EKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ L + + + E S + S ++ N L L ++ S N A ++A
Sbjct: 81 --RLPLDEKLKVDISHTPEMKGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPG 138
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQY 184
F++ MN +K+LG+ T F+ G+ + +TARD+ + + +
Sbjct: 139 GYDAFIRAMNAKAKSLGMKNTRFVEPTGL-SIHNVSTARDLTQMLIASKQYPLIGQLSTT 197
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ NTN V KTGFT A+G +V + + + V+
Sbjct: 198 REEMATFANPAYTLPFRNTNHLVYRENWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVV 257
Query: 244 LGALDRNTRNKVSASLLSM 262
+ A + T ++ L +
Sbjct: 258 MDAFGKYTHFADASRLRTW 276
>gi|331683812|ref|ZP_08384408.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli H299]
gi|331078764|gb|EGI49966.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli H299]
Length = 313
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS------------IAETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLTLMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|84498026|ref|ZP_00996823.1| probable penicillin-binding protein dacb1
(d-alanyl-d-alaninecarboxypeptidase) (dd-peptidase)
(dd-carboxypeptidase) [Janibacter sp. HTCC2649]
gi|84381526|gb|EAP97409.1| probable penicillin-binding protein dacb1
(d-alanyl-d-alaninecarboxypeptidase) (dd-peptidase)
(dd-carboxypeptidase) [Janibacter sp. HTCC2649]
Length = 416
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/291 (20%), Positives = 103/291 (35%), Gaps = 27/291 (9%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+++ + + + + D +TG ++A P PAS K +TA +
Sbjct: 71 SVIVDTPTGVPAPPDVSDVAWLIADADTGEILAAKNPHAHLLPASTLKTLTAIHLLP--- 127
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ T T + S + G T T + L++ S ND A +AE
Sbjct: 128 --RLKPTAVRTATTLESNAEGTRVGMVAGGTYTAAQLFQALVMSSGNDAAYGLAELNGGL 185
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
K + N + LG T + G+ G Y++A D+A+ + Y+
Sbjct: 186 AKTVTEL-NGLAAELGAHDTVVADPSGLDSPGQYSSAYDLALFGRAAIANPA-YLKLAST 243
Query: 191 KGLEIKGKK-----------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
K N N + + G G+K GFT A+ + +A +G ++
Sbjct: 244 KTATFPAATSRSSRSRSSYAIGNHNRLLWNYPGTIGVKNGFTKAAHRTFIGAATRGGKTY 303
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
I + + R +ASLL F + + K + EVP
Sbjct: 304 IVTEMYGTGSSWR--PAASLLDWAFAH-------GAVAKPVGRLVDRGEVP 345
>gi|324006491|gb|EGB75710.1| beta-lactamase [Escherichia coli MS 57-2]
Length = 313
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFTNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|299538369|ref|ZP_07051652.1| penicillin-binding protein 5* precursor [Lysinibacillus fusiformis
ZC1]
gi|298725956|gb|EFI66548.1| penicillin-binding protein 5* precursor [Lysinibacillus fusiformis
ZC1]
Length = 356
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 80/360 (22%), Positives = 140/360 (38%), Gaps = 37/360 (10%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+R F L + + +L + P S+A Y +LD TG ++ + D ASLTK+
Sbjct: 2 LRLFRLTLFMIIVLMVMLPQTSLARG--GSGYAVLDGETGRILIGSNSDERLPIASLTKI 59
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
TA V L + IS A+ S+ + G +T++ L L+++S ND
Sbjct: 60 WTALVAIENSD-----LQEEVVISPKAAMAEGSSIYLQAGEKVTVETLLYGLMLRSGNDA 114
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A A+AE + + + FV+ MN + GL+ T FMN G+ H ++ARD A +
Sbjct: 115 ATALAEHVGGSVEGFVKLMNERAVIAGLTNTVFMNPSGLHHDEHLSSARDTAEMLRLALQ 174
Query: 180 D--FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG----------------------ADG 215
+ F + + + G + N + + G A
Sbjct: 175 NKTFEKIASTVLYRANTVNGMLWENKHRLLREGSGMAADIDDETEQPVSSLKSATGTAFA 234
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
KTGFT +G + + + Q I V L D V L + + + + +
Sbjct: 235 GKTGFTKVAGRTLATAFQKDGQICIVVTLNESDD---WNVHRGLSNKVWQDYSLETVVKK 291
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIIN--YNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ ++ + ++ +KE + + K + S FI E+I K+
Sbjct: 292 GKYNVNKKLAIRLQEPVRLQLNKEEKEQVRQVLHVSRKRQEAVLSIFIGEERIYATPVKV 351
>gi|302547465|ref|ZP_07299807.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
hygroscopicus ATCC 53653]
gi|302465083|gb|EFL28176.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
himastatinicus ATCC 53653]
Length = 311
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 70/271 (25%), Positives = 122/271 (45%), Gaps = 24/271 (8%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
LLDT +G + D AS TK+M A VV K L
Sbjct: 35 SPEPPEVSAKGAYLLDTGSGEELMAKGADTKRPIASTTKIMAALVVLE---TKNVDLDKQ 91
Query: 80 ITISKNASEY----PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL------CK 129
+T+ ++ +Y S + + G +T++ L +++ S D A+A+A++ +
Sbjct: 92 VTVKEDYRDYVTKSEASTADLQTGDKLTVNQLLYGMMLPSGCDAAMALADTFGTGDTVAE 151
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGV-VQHGHYTTARDMAILSWRIKTD--FPQYMH 186
K FV MN +++LGL+ TH+ + GV G+Y+T R++A L+ R + F + +
Sbjct: 152 RTKSFVSKMNAKAEDLGLTNTHYDSFDGVSASSGNYSTPREVAELTQRAMKNATFQKVVK 211
Query: 187 YFQIKGL------EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
K + + NTN +G++ GA G+KTG T +G +V +A + ++++
Sbjct: 212 SVSTKQEAPAANGRTRYYSWDNTNRILGSYKGAVGVKTGTTTPAGPCLVFAAKRDGRTVV 271
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
VIL D R + +L + T K
Sbjct: 272 GVILN--DAADRYPDAQKMLDFAYDADTQVK 300
>gi|256848334|ref|ZP_05553777.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus coleohominis
101-4-CHN]
gi|256714932|gb|EEU29910.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus coleohominis
101-4-CHN]
Length = 417
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/354 (15%), Positives = 114/354 (32%), Gaps = 32/354 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F++I + + I + + +D TG ++ + + AS TK++T
Sbjct: 15 FVMIFSCFTAAFISTAQADQTKLEAKAAITMDAQTGQILFQQNANQKLAVASCTKILTLA 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA--- 120
V+ + + K I I++ ++ ++ L A
Sbjct: 75 VIEQDIADGKLSWNQKIKINRKVAKTSTDWHFSNVELKAGHRYTVRSLCESMMIVSADGS 134
Query: 121 -VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYT 165
A+A + + F + M +K G+ N G+ +
Sbjct: 135 AEALALASAGSTAAFNKKMQAVAKKAGVHDAKIYNMIGLSNGELGSNGIKGVSKKAENAF 194
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-----------GAD 214
+A+DMA++S + T +P ++ + +E K + N + D
Sbjct: 195 SAKDMALISRYLVTKYPDALNITKATNVEFKVDDKQSYNMLNINGMLPNNGNAPKNGTMD 254
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGAL--DRNTRNKVSASLLSMGFYNKTDRKK 272
G+KTG T +G V + + ++ LI V+LG D + + K + +L
Sbjct: 255 GLKTGSTDKAGNCFVGTGVFNNRRLITVVLGTDIHDYSKQFKETNKMLEAVQGAYQPVTL 314
Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
N + V K+ ++ S + K
Sbjct: 315 -KQPSDLKKLTNQVRVAHGKRKTVKIGLKQTAALWLPKGSKINQVSGQLTLSKG 367
>gi|283832440|ref|ZP_06352181.1| penicillin-binding protein 7 [Citrobacter youngae ATCC 29220]
gi|291072100|gb|EFE10209.1| penicillin-binding protein 7 [Citrobacter youngae ATCC 29220]
Length = 315
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/258 (22%), Positives = 100/258 (38%), Gaps = 10/258 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + ++D NT VI N+PD AS+TKLMTA VV
Sbjct: 23 AVAKTATTVAASQPEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARL 82
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L I+ + S + S ++ + L L ++ S N A ++A
Sbjct: 83 PLNEKLKVDISQTPE---MKGIYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGG 139
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYM 185
F++ MN +K LG++ T F+ G+ + +TARD+ L + +
Sbjct: 140 YNAFIKAMNAKAKALGMTQTRFVEPTGL-SIHNVSTARDLTKLLIASKQYPLIGQLSTTR 198
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ NTN V KTGFT A+G +V + ++ + V++
Sbjct: 199 EDMATFANPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVM 258
Query: 245 GALDRNTRNKVSASLLSM 262
A + T ++ L +
Sbjct: 259 DAFGKYTHFADASRLRTW 276
>gi|26248513|ref|NP_754553.1| D-alanyl-D-alanine endopeptidase [Escherichia coli CFT073]
gi|227887189|ref|ZP_04004994.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 83972]
gi|300978674|ref|ZP_07174364.1| beta-lactamase [Escherichia coli MS 45-1]
gi|301048867|ref|ZP_07195861.1| beta-lactamase [Escherichia coli MS 185-1]
gi|26108918|gb|AAN81121.1|AE016763_80 Penicillin-binding protein 7 precursor [Escherichia coli CFT073]
gi|227835539|gb|EEJ46005.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 83972]
gi|300299322|gb|EFJ55707.1| beta-lactamase [Escherichia coli MS 185-1]
gi|300409606|gb|EFJ93144.1| beta-lactamase [Escherichia coli MS 45-1]
gi|307554203|gb|ADN46978.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli ABU 83972]
gi|315294501|gb|EFU53849.1| beta-lactamase [Escherichia coli MS 153-1]
Length = 313
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G + + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLAMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|238895697|ref|YP_002920432.1| D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae NTUH-K2044]
gi|238548014|dbj|BAH64365.1| D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 315
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/259 (20%), Positives = 99/259 (38%), Gaps = 12/259 (4%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + ++D T +I + PD AS+TK+MTA VV
Sbjct: 23 ALAKTPTAVTASQPEIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDA-- 80
Query: 71 EKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L +T+ + E S + S ++ + L L ++ S N A ++A
Sbjct: 81 --HLPLDEMLTVDISHTPEMKGIYSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPG 138
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQY 184
F++ MN ++ LG++ T ++ G+ + +TARD+ L + +
Sbjct: 139 GYDAFIRAMNAKAQALGMTHTRYVEPTGL-SVHNVSTARDLTKLLIASEQYPLIGQLSTT 197
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ NTN V KTGFT A+G ++ + + + V+
Sbjct: 198 KEETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVV 257
Query: 244 LGALDRNTRNKVSASLLSM 262
+ A + T ++ L +
Sbjct: 258 MDAFGKYTHFADASRLRTW 276
>gi|325523666|gb|EGD01938.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. TJI49]
Length = 372
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 9/248 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D NTG + + AS++KLMTA VV
Sbjct: 110 TPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDSKAPMT---DQI 166
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 167 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 226
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF--PQYMHYFQIKGLEIKG 197
+K LG++ THF N+ G+ + ++ARD+ + Q+ + K
Sbjct: 227 AKAKALGMTDTHFENSTGL-SSSNVSSARDLVKMVNAAYQYPLIRQFSTDRTYEVYTGKR 285
Query: 198 KKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N+ A+ G KTGF +G +V A + ++ V+L + + +R
Sbjct: 286 NLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRFA 345
Query: 255 VSASLLSM 262
++ L +
Sbjct: 346 DASRLRNW 353
>gi|300715952|ref|YP_003740755.1| penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase)
[Erwinia billingiae Eb661]
gi|299061788|emb|CAX58904.1| Penicillin-binding protein 7 (D-alanyl-D-alanine-endopeptidase)
[Erwinia billingiae Eb661]
Length = 315
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/281 (20%), Positives = 108/281 (38%), Gaps = 24/281 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------------ETNKLPYYTLLDTNTGHVIAENYP 47
+ L ++++A++ + L A ++D NT VI ++P
Sbjct: 4 KIRLSLLSLALVFSAQLPLGQAVASSKLADVAPIVQPQIASGSAMIVDLNTNKVIFASHP 63
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D AS+TKLMT V ML I+ + E S + S ++ N
Sbjct: 64 DLVRPMASITKLMTVMVTLDAHLPMDEMLNVDIS---HTPEMRGVYSRVRLNSEISRKNM 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+ L ++ S N A ++A F++ MN +++LG++ TH++ G+ + +TA
Sbjct: 121 MLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAQSLGMTHTHYVEPTGL-SIENVSTA 179
Query: 168 RDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFT 221
RD+ L + + + + NTN V KTGFT
Sbjct: 180 RDLTKLLIATKRYPLIGQLSTTHEDMAVFKSPNYTLPFRNTNHLVYRQDWNIQLTKTGFT 239
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + + + V++ A + T + L
Sbjct: 240 NEAGHCLVMRTVINQRPVALVVMDAFGKYTHFADANRLRDW 280
>gi|323352662|ref|ZP_08087632.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
VMC66]
gi|322121698|gb|EFX93444.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
VMC66]
gi|324995361|gb|EGC27273.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK678]
gi|327468942|gb|EGF14414.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK330]
Length = 455
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 79/383 (20%), Positives = 148/383 (38%), Gaps = 58/383 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
++ L+++ +A L+++ P + A+ + ++D +TG V+ E
Sbjct: 6 KKKLLLLGIAFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWE 65
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 66 DNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAGV 125
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 126 DYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGAA 185
Query: 160 QH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 186 AVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEET 245
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 246 FETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDGE 305
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKEI 303
R+ +L+ + + +K ++ ++ Q V +E + +
Sbjct: 306 YYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENNV 365
Query: 304 INYNTQMKEAKDKESHFIDFEKI 326
+ +K K S + EK+
Sbjct: 366 LKAENGLKTLSSKISDEMKVEKV 388
>gi|283479035|emb|CAY74951.1| penicillin-binding protein 7 [Erwinia pyrifoliae DSM 12163]
Length = 316
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/251 (21%), Positives = 96/251 (38%), Gaps = 12/251 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ ++D N+ VI E++PD AS+TKLMT V L
Sbjct: 35 SSAARPAIASGSAMIVDLNSNKVIYESHPDRVRPIASITKLMTVMVTLDA----HLPLDE 90
Query: 79 PITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ + + + S + S ++ N + L ++ S N A ++A F++
Sbjct: 91 MLKVDISHTPQMRGIYSRVRLNSELSRKNMMLLALMSSENRAAASLAHHYPGGYDAFIRA 150
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKG 192
MN ++ LG+S T ++ G+ + +TARD++ L + +
Sbjct: 151 MNAKARALGMSHTRYVEPTGL-SIDNVSTARDLSKLLQATKRYPLIGQLSTTHEDMASFR 209
Query: 193 LEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ NTN V KTGFT +G +V + + + V+L A + T
Sbjct: 210 SPNYTLPFRNTNHLVYRPDWNIQLTKTGFTNEAGHCLVMRTVINQRPVSLVVLDAFGKYT 269
Query: 252 RNKVSASLLSM 262
++ L
Sbjct: 270 HFADASRLRQW 280
>gi|319942241|ref|ZP_08016556.1| hypothetical protein HMPREF9464_01775 [Sutterella wadsworthensis
3_1_45B]
gi|319804114|gb|EFW01014.1| hypothetical protein HMPREF9464_01775 [Sutterella wadsworthensis
3_1_45B]
Length = 372
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 98/243 (40%), Gaps = 7/243 (2%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+D +TG + D AS+TKLMTA V+ L + I
Sbjct: 114 PLQLGSSVAYAMDQDTGEELVVKNADVELPIASVTKLMTALVIAESD----VDLDEKVRI 169
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
++ ++S G +T ++ LK ++ S N A A+A + K FV MN +
Sbjct: 170 TREDYVRSTAHSKLISGMRLTRESLLKAALMSSDNRAAAALARTYPGGRKAFVAKMNERA 229
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP- 201
+G++ + F + G+ H T +++ + + + + ++
Sbjct: 230 AAIGMTNSFFADPTGLDNRNHSTARDLGKLVAAVYQHQEIRDASTTSMARISTGRRQVNL 289
Query: 202 -NTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
TN +G G KTGFT A+G +V + G++ L+ V+L + + R ++
Sbjct: 290 ATTNRLIGDPSWRIGIQKTGFTTAAGRCMVVQSDVGERRLVMVVLDSPNNAQRADDMRTM 349
Query: 260 LSM 262
+
Sbjct: 350 RAY 352
>gi|325688308|gb|EGD30327.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK72]
Length = 455
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 78/383 (20%), Positives = 147/383 (38%), Gaps = 58/383 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
++ L+++ + L+++ P + A+ + ++D +TG V+ E
Sbjct: 6 KKKLLLLGVVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWE 65
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 66 DNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAGV 125
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 126 DYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGAA 185
Query: 160 QH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 186 AVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEET 245
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 246 FETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDGE 305
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKEI 303
R+ +L+ + + +K ++ ++ Q V +E + +
Sbjct: 306 YYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENNV 365
Query: 304 INYNTQMKEAKDKESHFIDFEKI 326
+ +K K S + EK+
Sbjct: 366 LKAENGLKTLSSKISDEMKVEKV 388
>gi|302190851|ref|ZP_07267105.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus iners AB-1]
Length = 425
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 58/344 (16%), Positives = 114/344 (33%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ + K T + S+
Sbjct: 59 ALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAINAGKISWQTKVMPSR 118
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNN 140
A + + ++ L +SAN A+ +A ++ + KKFV M
Sbjct: 119 EAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 178
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A D+ IL + +FPQ +
Sbjct: 179 QLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDIGILIKHLLLEFPQVLD 238
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L K N N + DG+KTG T A+G + ++ ++
Sbjct: 239 TTRISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 297
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ ++ VI+GA + R + L + + N + + P
Sbjct: 298 GRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNRPI 357
Query: 292 ISEEVCTTQKEIINYNT--QMKEAKDKESHFIDFEKITLLKNKI 333
C Q I + ++ + + T + I
Sbjct: 358 NEVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 401
>gi|238753350|ref|ZP_04614713.1| D-alanyl-D-alanine endopeptidase [Yersinia ruckeri ATCC 29473]
gi|238708303|gb|EEQ00658.1| D-alanyl-D-alanine endopeptidase [Yersinia ruckeri ATCC 29473]
Length = 311
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/260 (24%), Positives = 104/260 (40%), Gaps = 12/260 (4%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+A + + ++D T V+ N PDH AS+TKLMTA V
Sbjct: 26 LATTNVVVKQQVAPLELASGSAMVVDLKTNKVLYSNNPDHVVPIASITKLMTAMVTLDA- 84
Query: 70 KEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
K L I++ + ++ S K S + + L L ++ S N A ++A
Sbjct: 85 ---KLPLDEVISVDIHQTKELKGVFSRVKVNSEINRKDMLLLALMSSENRAAASLAHHYP 141
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHY 187
F+ MN +K+LG++ THF+ G+ + +TARD++ L K +
Sbjct: 142 GGYSAFITAMNVKAKSLGMTHTHFVEPTGL-SINNVSTARDLSKLLLATKQYPLIGQLST 200
Query: 188 FQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
K + Y NTN V KTGFT +G +V + ++ + V
Sbjct: 201 STEKMATFRNPSYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLVMRTVINNRPVALV 260
Query: 243 ILGALDRNTRNKVSASLLSM 262
+L A + T + L S
Sbjct: 261 VLDAFGKYTHFADANRLRSW 280
>gi|254251960|ref|ZP_04945278.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158]
gi|124894569|gb|EAY68449.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158]
Length = 384
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 9/248 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D NTG + + AS++KLMTA VV
Sbjct: 122 TPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDSKLPMT---DQL 178
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 179 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 238
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF--PQYMHYFQIKGLEIKG 197
+K LG++ THF N+ G+ + ++ARD+ L ++ + K
Sbjct: 239 AKAKALGMADTHFENSTGL-SSSNVSSARDLVKLVNAAYQYPLIRKFSTDRTYEVYTGKR 297
Query: 198 KKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N+ A+ G KTGF +G +V A + ++ V+L + + +R
Sbjct: 298 NLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPVVMVLLDSFGKYSRFA 357
Query: 255 VSASLLSM 262
+A L +
Sbjct: 358 DAARLRNW 365
>gi|332093252|gb|EGI98312.1| D-alanyl-D-alanine endopeptidase [Shigella boydii 5216-82]
Length = 310
Score = 125 bits (312), Expect = 1e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L P A ++D NT VI N+PD
Sbjct: 1 MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 61 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|254479748|ref|ZP_05093030.1| Penicillin-binding protein 5, C-terminal domain [Carboxydibrachium
pacificum DSM 12653]
gi|214034315|gb|EEB75107.1| Penicillin-binding protein 5, C-terminal domain [Carboxydibrachium
pacificum DSM 12653]
Length = 334
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 68/260 (26%), Positives = 117/260 (45%), Gaps = 13/260 (5%)
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
S+N ++ ++ G +TL+ L L+++SAND A+AIAE + + + F + MN +
Sbjct: 1 SENVTKIEGNSIFLSPGEQLTLEQLLYALMLESANDAAIAIAEYIGGSVENFAKMMNEKA 60
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP--------QYMHYFQIKGLE 194
+ +G +HF+N +G+ HY+T DMA ++ + Y K +
Sbjct: 61 REIGAYNSHFVNPNGLPDENHYSTPYDMAQIARYAMQNAEFRKIVSTLHYQIPPTNKFDK 120
Query: 195 IKGKKYPNT--NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ N + + GADG+KTG+T A+G +VASA + LI+VI+G N
Sbjct: 121 PRDLWISNRLLKPSRFHYEGADGVKTGYTVAAGQVLVASATRDGHRLISVIMGDEGINI- 179
Query: 253 NKVSASLLSMGFYNKTDRKKINY--IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+ LL GF N + K +I ++P I+++ + N+
Sbjct: 180 WTDTIKLLDYGFQNFSLVKVTQKDEVITSIELGKGGFKLPLIAQKDFYYEVPKGKENSIK 239
Query: 311 KEAKDKESHFIDFEKITLLK 330
E KE +K +L
Sbjct: 240 TEVVLKEDIKAPIQKGEVLG 259
>gi|24372585|ref|NP_716627.1| D-alanyl-D-alanine endopeptidase [Shewanella oneidensis MR-1]
gi|24346606|gb|AAN54072.1|AE015544_5 D-alanyl-D-alanine endopeptidase [Shewanella oneidensis MR-1]
Length = 321
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 61/276 (22%), Positives = 102/276 (36%), Gaps = 10/276 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D T ++ + PD AS+TKLMTA V LT I +
Sbjct: 50 QEVAANSALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTLDAKLPMDEKLTINIKDT 109
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
K S + GS ++ L L ++ S N A ++A K F++ MN +K
Sbjct: 110 KE---MRGVYSRVRIGSEISRKEMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAK 166
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--- 200
LG+ + F+ G+ + + +L + + K + KY
Sbjct: 167 ALGMKNSRFVEPTGLSAKNVSSARDLVVLLKASQGYPMLGQLSSTEKKTVTFGKPKYSLD 226
Query: 201 -PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
NTN V KTGFT A+G +V + + V+L A + T +
Sbjct: 227 FRNTNRLVYKDNWDIHLTKTGFTNAAGHCLVMRTEMAKRKVAFVVLDAKGKYTHMADANR 286
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
L + I K + +Q ++ +SE
Sbjct: 287 LRNWL--ETGKVTPIPADAKQYKKQRSQQQLAKVSE 320
>gi|324990581|gb|EGC22517.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK353]
Length = 455
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 78/383 (20%), Positives = 147/383 (38%), Gaps = 58/383 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
++ L+++ + L+++ P + A+ + ++D +TG V+ E
Sbjct: 6 KKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWE 65
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 66 DNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAGV 125
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 126 DYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGAA 185
Query: 160 QH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 186 AVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEET 245
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 246 FETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDGE 305
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKEI 303
R+ +L+ + + +K ++ ++ Q V +E + +
Sbjct: 306 YYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENNV 365
Query: 304 INYNTQMKEAKDKESHFIDFEKI 326
+ +K K S + EK+
Sbjct: 366 LKAENGLKTLSSKISDEMKVEKV 388
>gi|117618941|ref|YP_856986.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117560348|gb|ABK37296.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 306
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 54/283 (19%), Positives = 109/283 (38%), Gaps = 25/283 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPY-------------------YTLLDTNTGHVI 42
R FL ++ A L + + A + + + TG V+
Sbjct: 4 RPFLTLLLGAFLVPVSMESAQANPFSAQSHSPNSFLEQRNDLALSSAAFVVANPRTGEVL 63
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
+E + AS+TKLMTA VV + MLT + + + S GS +
Sbjct: 64 SERNANRVMPIASITKLMTALVVLDANQRLSEMLTVTMA---DVDRLKGTGSRLAVGSRL 120
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ + L + ++ S N A A+A + ++ F++ MN ++ LG+ +T F ++ G+
Sbjct: 121 SRADMLHIALMSSENRAASALARNYPGGQRAFIEAMNAKARMLGMWSTQFSDSTGLTPRN 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM---KTG 219
+ +++ + + + + ++ N G+ + KTG
Sbjct: 181 VSSAHDLAKLVAAASTYPLIRQYSSTEERMVRNGKRQLHYLNSNRLVREGSWPISLSKTG 240
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+ +G +V + + +I V+L A N R + + S
Sbjct: 241 YIREAGRCLVMATQINREPVIMVLLNADTPNARVADAKRIKSW 283
>gi|327458687|gb|EGF05035.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK1057]
Length = 455
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 78/383 (20%), Positives = 147/383 (38%), Gaps = 58/383 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
++ L+++ + L+++ P + A+ + ++D +TG V+ E
Sbjct: 6 KKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQTINRPKSSLVIDGSTGDVVWE 65
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 66 DNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAGV 125
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 126 DYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGAA 185
Query: 160 QH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 186 AVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEET 245
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 246 FETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDGE 305
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKEI 303
R+ +L+ + + +K ++ ++ Q V +E + +
Sbjct: 306 YYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENNV 365
Query: 304 INYNTQMKEAKDKESHFIDFEKI 326
+ +K K S + EK+
Sbjct: 366 LKAENGLKTLSSKISDEMKVEKV 388
>gi|325124211|gb|ADY83734.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter
calcoaceticus PHEA-2]
Length = 335
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 8/251 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ + ++D TG V+ + AS+TK+MTA V +
Sbjct: 80 TSGYNAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKVMTAVVTADARLNMSEEI 139
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T I + S+ST + G M L ++KS N A A+A + FV
Sbjct: 140 -TLEQIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVA 198
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN ++ LG+S+TH+ + G+ + ++ARD+ IL + + + +
Sbjct: 199 AMNAKARALGMSSTHYYESTGL-DPRNVSSARDLGILVS-TASQYGLIRQFSTTPTYDFN 256
Query: 197 GK----KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
K NTN V + KTG+ +G +V + + V+LG
Sbjct: 257 LGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQA 316
Query: 252 RNKVSASLLSM 262
RN + +LL
Sbjct: 317 RNNDATNLLGW 327
>gi|307270557|ref|ZP_07551855.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
TX4248]
gi|306513138|gb|EFM81772.1| serine-type D-Ala-D-Ala carboxypeptidase [Enterococcus faecalis
TX4248]
Length = 493
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/388 (18%), Positives = 141/388 (36%), Gaps = 64/388 (16%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKL---------------------PYYTLLDTNTGHVIA 43
+ + ++ + F + ++D ++G ++
Sbjct: 15 FTLFLLGLVVSCGAFFAQPTVTHAEEDITAIAKKMGTTLKADGIPKAAIVVDADSGEILW 74
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
PD WNPAS+ K+MT Y+ F +++ K + T +T ++ + SN+ G
Sbjct: 75 SQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVDISKIYAISNNKITLG 134
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHG- 157
+ LK++ V S+N + +A + + FV MN + LG++ T + N G
Sbjct: 135 VAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAAELGMTNTTYYNCSGA 194
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ +TARD+A L++ ++P+ + + +
Sbjct: 195 QASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEITNKPVVKTMVGTPYEE 254
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
+ N++ + G DG+KTG + GFN +A+ Q D LI VILG
Sbjct: 255 TFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQEDFRLIEVILGVGNWQNQDG 314
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SNEVPNISEEVCTTQKE 302
R+ +LL + +K ++ + + + +P S+
Sbjct: 315 EYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYGVIPKGSQPTFKLVAG 374
Query: 303 IINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +T + + +K
Sbjct: 375 QVQVDTPL--TLLNSTVQAPKVAYQEVK 400
>gi|302867861|ref|YP_003836498.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
aurantiaca ATCC 27029]
gi|302570720|gb|ADL46922.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
aurantiaca ATCC 27029]
Length = 426
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 63/263 (23%), Positives = 102/263 (38%), Gaps = 13/263 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P S + + D ++G V+ P PAS+ KL+ A + L +
Sbjct: 74 LVVPPASSAPPAVTATSWVVADLDSGAVLGGCGPHEYGVPASVQKLLLAATMLPRLDPHR 133
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTE 131
+T A E S +G ++ L+++S N+ A A+A
Sbjct: 134 ---EVTVTAGDLAVEPGSSAVGLVEGGRYQIETIWLGLLLRSGNEAANALARLGGGPDGL 190
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------ 185
V+ MN + LG TH + G+ G +T+A D+A+++ D
Sbjct: 191 AGGVRAMNEEAHRLGARQTHAVTPSGLDGPGQFTSAYDLALIARACFADPAFRRYAATRI 250
Query: 186 -HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KG N N + + GA G KTGFT + V +A +G + L+ +L
Sbjct: 251 AQIPAQPAQRAKGFAISNDNMLLDHYPGALGGKTGFTDLARHTYVGAAERGGRRLVVTLL 310
Query: 245 GALDRNTR-NKVSASLLSMGFYN 266
GA R + A+LL GF
Sbjct: 311 GAEVTTQRGWQQGAALLDWGFAQ 333
>gi|330831299|ref|YP_004394251.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7
[Aeromonas veronii B565]
gi|328806435|gb|AEB51634.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7
[Aeromonas veronii B565]
Length = 259
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 61/261 (23%), Positives = 104/261 (39%), Gaps = 12/261 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + + + ++D TG + + ASLTKLMTA VV
Sbjct: 1 MLGLPAVSAAPNPAKLEVRSSSALVVDVKTGKTLYQKNATKVRPIASLTKLMTALVVLDA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESL 127
+ L IT+ KN + + + + +T +AL L ++ S N +A A+A
Sbjct: 61 KQ----NLNQTITVDKNDLDRVKHTHSRIRMGTKVTRRDALHLALMSSENRMASALARHY 116
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFP 182
FV+ MNN ++ LG+ THF ++ G+ + +TA+D+ L + F
Sbjct: 117 PGGRSAFVRAMNNKARQLGMRNTHFYDSTGL-STRNVSTAQDLGKLAAAAYRQPLIRQFT 175
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIA 241
Q + + NTN V KTGFT +G +V A + L
Sbjct: 176 QDENREMRFSAPAYSLMFNNTNPLVKNPDWDVRLSKTGFTDEAGRCLVMRAKPDSRELAI 235
Query: 242 VILGALDRNTRNKVSASLLSM 262
V+L ++ + T + +
Sbjct: 236 VLLNSVGKRTPIGDANRIRKW 256
>gi|213609716|ref|ZP_03369542.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 267
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 5/225 (2%)
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
++S ND VA+A+ ++ FV MN+ LGL THF HG+ G Y++ARDMA+
Sbjct: 1 MQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMAL 60
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVAS 231
+ + D P ++ K G + N N + DG+KTG T +G+N+VAS
Sbjct: 61 IGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVAS 120
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSN 287
A +G LI+ ++G R S LL+ GF + + + N
Sbjct: 121 ATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDR 180
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++V T + + + +K ++
Sbjct: 181 ASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGTI 225
>gi|332978541|gb|EGK15250.1| D-alanyl-D-alanine endopeptidase PbpG [Psychrobacter sp.
1501(2011)]
Length = 343
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/251 (21%), Positives = 96/251 (38%), Gaps = 21/251 (8%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF--LKEKKAMLTTPI 80
+ +LD TG + E D AS+TK+MTA VV ++ L
Sbjct: 92 PISTGSRGVIVLDVATGKPLYEKNADIARPIASITKIMTAMVVLDAGLDMREEIKLDPED 151
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ ++S K G M L + ++KS N A ++A + F++ MN
Sbjct: 152 FVGPKR-----ASSRLKSGDRMNRAELLLMALMKSENPAAKSLARNYPGGYDAFMRAMNA 206
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+++LG+++ F + G+ + + ++ + + K + Y
Sbjct: 207 KARSLGMNSAFFGDPTGLDKRNVASPMDLAKMVQA--AGQYEVIRRFSTTKNYDFYVANY 264
Query: 201 PNTNWAV-----------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ N GT+ KTGF +G +V ++ I VILGA
Sbjct: 265 TDGNRTYPASNTSKLVRGGTYP-IGISKTGFINEAGQCVVMETQFNNRPAIIVILGADSS 323
Query: 250 NTRNKVSASLL 260
NTR + ++L
Sbjct: 324 NTRWNDAENIL 334
>gi|270260850|ref|ZP_06189123.1| putative endopeptidase [Serratia odorifera 4Rx13]
gi|270044334|gb|EFA17425.1| putative endopeptidase [Serratia odorifera 4Rx13]
Length = 309
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 56/252 (22%), Positives = 94/252 (37%), Gaps = 10/252 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ ++D T V+ PD AS+TKLMTA V ML
Sbjct: 32 AAAHAAQPELASGSAMVVDMQTHKVMYARNPDEVVPIASITKLMTAMVTLDAHLPLDEML 91
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ I + S + S +T + L L ++ S N A ++A F++
Sbjct: 92 SVDIHQTPE---MKGVYSRVRLNSEITRKDMLLLALMSSENRAAASLAHHYPGGYGAFIK 148
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIK 191
MN ++ LG++ TH++ G+ + +TARD+ L + +
Sbjct: 149 AMNAKARALGMTNTHYVEPTGL-SIHNVSTARDLTKLLIATKQYPLIGQLSTTTERMASF 207
Query: 192 GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ NTN V KTGFT +G + + G +S+ V+L A +
Sbjct: 208 KDPNYTLPFRNTNHLVYNPKWNIQLTKTGFTNEAGHCLAMRTMIGSRSVSLVVLDAFGKY 267
Query: 251 TRNKVSASLLSM 262
T + L +
Sbjct: 268 THFADANRLRTW 279
>gi|167813984|ref|ZP_02445664.1| penicillin-binding protein 6 [Burkholderia pseudomallei 91]
Length = 306
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/251 (23%), Positives = 114/251 (45%), Gaps = 13/251 (5%)
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ +++ + + +I++S ND A+A+AE + +E +FV MN ++ LG+ THF
Sbjct: 16 RMFIEANKPVSVHDLVYGMIIQSGNDAAIALAELVGGSEAQFVNMMNAEAQRLGMKNTHF 75
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ +G+ HYTTA D+A LS + D+P Y + F +K K PN N +
Sbjct: 76 ADVNGMPDPNHYTTAGDLAKLSTHLIRDYPDYYNIFSVKEFTYNNIKQPNRNRLLWLDPT 135
Query: 213 ADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
DG+KTG T A+G+ ++ASA + + L+ V++G + R + S +L+ G+
Sbjct: 136 VDGLKTGHTQAAGYCLIASAKRALPGAADATRRLVTVMMGETKESDRVQDSMKMLNYGYT 195
Query: 266 NKTDRKKINYIIKD----FYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDKESH 319
+ Y+ +N + ++ + + ++ +
Sbjct: 196 AFDSVRLYKASQPIDTPRVYKGKSNNVQVGVKKDQFITVPRGLADKVKPEVALNAPLIAP 255
Query: 320 FIDFEKITLLK 330
D + + +K
Sbjct: 256 LADGQVVGSVK 266
>gi|307719458|ref|YP_003874990.1| D-alanyl-D-alanine carboxypeptidase A [Spirochaeta thermophila DSM
6192]
gi|306533183|gb|ADN02717.1| putative D-alanyl-D-alanine carboxypeptidase A [Spirochaeta
thermophila DSM 6192]
Length = 387
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 80/313 (25%), Positives = 131/313 (41%), Gaps = 14/313 (4%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYP 90
+ T V+ E D P ASLTKL+TAY+V ++ P+ + +
Sbjct: 31 EPTTRTVLFEKQADLPHPAASLTKLVTAYLVLQAMEHGLLREDLPLPVPSALARIPFPPD 90
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
S + G+T+T L L +V SAND A A+A L F + MN ++LG S
Sbjct: 91 ASLAGLTPGTTLTPAQLLSLTLVYSANDAACALALLLAPDIPTFARRMNTLVQSLGYSHL 150
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
F G+ H T + + Y + + I G+ Y N N +G +
Sbjct: 151 SFEEPSGLSPHNTITAREIALFAADYLDRFPSAPARYHSPRAVTIGGRTYLNRNTLLGRY 210
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LDRNTRNKVSASLLSMGF 264
G +G+KTG+ SGF+IVA A +G SLIAV+LG R+ +A+LL GF
Sbjct: 211 PGLEGLKTGYLEESGFHIVAYARRGPTSLIAVLLGIQAPSYWEGMQERDHQAAALLDYGF 270
Query: 265 YNKTDRKKINYIIKDF----YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ I+ Q P V + +I + ++++ ++ +
Sbjct: 271 DTYLTTEAPLTGIRPVRIWGGTQPFLTPRPARPLRVTLARTDIPRLSVEVEQVSERWAPL 330
Query: 321 IDFEKITLLKNKI 333
E++ ++ +
Sbjct: 331 HPGERLGTVRLLL 343
>gi|259501428|ref|ZP_05744330.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus iners DSM
13335]
gi|259167177|gb|EEW51672.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus iners DSM
13335]
Length = 429
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 114/344 (33%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ + K T + S+
Sbjct: 63 ALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAINAGKISWQTKVMPSR 122
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNN 140
A + + ++ L +SAN A+ +A ++ + KKFV M
Sbjct: 123 EAIAVSKNPEYSNVPLQLGHQYTIRQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 182
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 183 QLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLD 242
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L K N N + DG+KTG T A+G + ++ ++
Sbjct: 243 TTRISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 301
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ ++ VI+GA + R + L + + N + + P
Sbjct: 302 GRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNRPI 361
Query: 292 ISEEVCTTQKEIINYNT--QMKEAKDKESHFIDFEKITLLKNKI 333
C Q I + ++ + + T + I
Sbjct: 362 NEVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 405
>gi|15802684|ref|NP_288711.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 EDL933]
gi|15832275|ref|NP_311048.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
Sakai]
gi|74312658|ref|YP_311077.1| D-alanyl-D-alanine endopeptidase [Shigella sonnei Ss046]
gi|157161616|ref|YP_001458934.1| D-alanyl-D-alanine endopeptidase [Escherichia coli HS]
gi|168764225|ref|ZP_02789232.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4501]
gi|168771600|ref|ZP_02796607.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4486]
gi|168777288|ref|ZP_02802295.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4196]
gi|168783704|ref|ZP_02808711.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4076]
gi|170019548|ref|YP_001724502.1| D-alanyl-D-alanine endopeptidase [Escherichia coli ATCC 8739]
gi|188025021|ref|ZP_02775528.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4113]
gi|188491726|ref|ZP_02998996.1| penicillin-binding protein 7 [Escherichia coli 53638]
gi|189402480|ref|ZP_02782715.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4401]
gi|189405204|ref|ZP_02813943.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC869]
gi|189406078|ref|ZP_02826192.2| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC508]
gi|193062314|ref|ZP_03043409.1| penicillin-binding protein 7 [Escherichia coli E22]
gi|194427101|ref|ZP_03059652.1| penicillin-binding protein 7 [Escherichia coli B171]
gi|194431501|ref|ZP_03063793.1| penicillin-binding protein 7 [Shigella dysenteriae 1012]
gi|208809227|ref|ZP_03251564.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4206]
gi|208813477|ref|ZP_03254806.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4045]
gi|208818552|ref|ZP_03258872.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4042]
gi|209396832|ref|YP_002271537.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4115]
gi|217327143|ref|ZP_03443226.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str.
TW14588]
gi|261223412|ref|ZP_05937693.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
FRIK2000]
gi|261259038|ref|ZP_05951571.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O157:H7 str.
FRIK966]
gi|291283382|ref|YP_003500200.1| Penicillin-binding protein 7 [Escherichia coli O55:H7 str. CB9615]
gi|293405603|ref|ZP_06649595.1| pbpG [Escherichia coli FVEC1412]
gi|293410496|ref|ZP_06654072.1| conserved hypothetical protein [Escherichia coli B354]
gi|293446485|ref|ZP_06662907.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B088]
gi|298381285|ref|ZP_06990884.1| pbpG [Escherichia coli FVEC1302]
gi|300901247|ref|ZP_07119348.1| beta-lactamase [Escherichia coli MS 198-1]
gi|300948233|ref|ZP_07162354.1| beta-lactamase [Escherichia coli MS 116-1]
gi|331663631|ref|ZP_08364541.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli TA143]
gi|12516442|gb|AAG57266.1|AE005445_3 penicillin-binding protein 7 [Escherichia coli O157:H7 str. EDL933]
gi|13362490|dbj|BAB36444.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. Sakai]
gi|73856135|gb|AAZ88842.1| penicillin-binding protein 7 [Shigella sonnei Ss046]
gi|157067296|gb|ABV06551.1| penicillin-binding protein 7 [Escherichia coli HS]
gi|169754476|gb|ACA77175.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Escherichia
coli ATCC 8739]
gi|187767413|gb|EDU31257.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4196]
gi|188015308|gb|EDU53430.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4113]
gi|188486925|gb|EDU62028.1| penicillin-binding protein 7 [Escherichia coli 53638]
gi|188999045|gb|EDU68031.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4076]
gi|189355332|gb|EDU73751.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4401]
gi|189359688|gb|EDU78107.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4486]
gi|189365744|gb|EDU84160.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4501]
gi|189371364|gb|EDU89780.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC869]
gi|189376656|gb|EDU95072.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC508]
gi|192931980|gb|EDV84579.1| penicillin-binding protein 7 [Escherichia coli E22]
gi|194414722|gb|EDX30993.1| penicillin-binding protein 7 [Escherichia coli B171]
gi|194420326|gb|EDX36403.1| penicillin-binding protein 7 [Shigella dysenteriae 1012]
gi|208729028|gb|EDZ78629.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4206]
gi|208734754|gb|EDZ83441.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4045]
gi|208738675|gb|EDZ86357.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4042]
gi|209158232|gb|ACI35665.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str. EC4115]
gi|209766398|gb|ACI81511.1| penicillin-binding protein 7 [Escherichia coli]
gi|209766400|gb|ACI81512.1| penicillin-binding protein 7 [Escherichia coli]
gi|209766402|gb|ACI81513.1| penicillin-binding protein 7 [Escherichia coli]
gi|209766404|gb|ACI81514.1| penicillin-binding protein 7 [Escherichia coli]
gi|209766406|gb|ACI81515.1| penicillin-binding protein 7 [Escherichia coli]
gi|217319510|gb|EEC27935.1| penicillin-binding protein 7 [Escherichia coli O157:H7 str.
TW14588]
gi|284922120|emb|CBG35201.1| penicillin-binding protein 7 [Escherichia coli 042]
gi|290763255|gb|ADD57216.1| Penicillin-binding protein 7 [Escherichia coli O55:H7 str. CB9615]
gi|291323315|gb|EFE62743.1| D-alanyl-D-alanine endopeptidase [Escherichia coli B088]
gi|291427811|gb|EFF00838.1| pbpG [Escherichia coli FVEC1412]
gi|291470964|gb|EFF13448.1| conserved hypothetical protein [Escherichia coli B354]
gi|298278727|gb|EFI20241.1| pbpG [Escherichia coli FVEC1302]
gi|300355321|gb|EFJ71191.1| beta-lactamase [Escherichia coli MS 198-1]
gi|300452239|gb|EFK15859.1| beta-lactamase [Escherichia coli MS 116-1]
gi|315061445|gb|ADT75772.1| D-alanyl-D-alanine endopeptidase [Escherichia coli W]
gi|320178919|gb|EFW53882.1| Murein-DD-endopeptidase [Shigella boydii ATCC 9905]
gi|320192249|gb|EFW66894.1| Murein-DD-endopeptidase [Escherichia coli O157:H7 str. EC1212]
gi|320199729|gb|EFW74318.1| Murein-DD-endopeptidase [Escherichia coli EC4100B]
gi|320657567|gb|EFX25365.1| D-alanyl-D-alanine endopeptidase [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|323936749|gb|EGB33034.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1520]
gi|324015921|gb|EGB85140.1| beta-lactamase [Escherichia coli MS 117-3]
gi|324118025|gb|EGC11924.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli E1167]
gi|326339477|gb|EGD63288.1| Murein-DD-endopeptidase [Escherichia coli O157:H7 str. 1125]
gi|326343939|gb|EGD67700.1| Murein-DD-endopeptidase [Escherichia coli O157:H7 str. 1044]
gi|331059430|gb|EGI31407.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli TA143]
Length = 313
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L P A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|315505737|ref|YP_004084624.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Micromonospora
sp. L5]
gi|315412356|gb|ADU10473.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Micromonospora
sp. L5]
Length = 419
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 63/263 (23%), Positives = 102/263 (38%), Gaps = 13/263 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ P S + + D ++G V+ P PAS+ KL+ A + L +
Sbjct: 67 LVVPPASSAPPAVTATSWVVADLDSGAVLGGCGPHEYGVPASVQKLLLAATMLPRLDPHR 126
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTE 131
+T A E S +G ++ L+++S N+ A A+A
Sbjct: 127 ---EVTVTAGDLAVEPGSSAVGLVEGGRYRIETIWLGLLLRSGNEAANALARLGGGPDGL 183
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------ 185
V+ MN + LG TH + G+ G +T+A D+A+++ D
Sbjct: 184 AGGVRAMNEEAHRLGARQTHAVTPSGLDGPGQFTSAYDLALIARACFADPAFRRYATTRI 243
Query: 186 -HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KG N N + + GA G KTGFT + V +A +G + L+ +L
Sbjct: 244 AQIPAQPAQRAKGFAISNDNMLLDHYPGALGGKTGFTDLARHTYVGAAERGGRRLVVTLL 303
Query: 245 GALDRNTR-NKVSASLLSMGFYN 266
GA R + A+LL GF
Sbjct: 304 GAEVTTQRGWQQGAALLDWGFAQ 326
>gi|169630760|ref|YP_001704409.1| penicillin-binding protein DacB1 [Mycobacterium abscessus ATCC
19977]
gi|169242727|emb|CAM63755.1| Probable penicillin-binding protein DacB1 [Mycobacterium abscessus]
Length = 429
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/266 (20%), Positives = 98/266 (36%), Gaps = 19/266 (7%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + + + D NTG+V+A P PAS+ K++ A +
Sbjct: 99 VITPDGAGPVPNDISAESWLIADLNTGNVVAAKDPHARHRPASVIKVLVAMEAINN---- 154
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + ++ + + G T T+ L L++ S ND A A+A L ++
Sbjct: 155 -LNLNQAVVGTQEDANSEGTRVGVDVGGTYTVRQLLTGLLMNSGNDAAHALAVQLGGMDE 213
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK- 191
+ +N+ ++ LG T G+ G T+A D+ + D K
Sbjct: 214 TVAK-INDMAQKLGARDTRAATPSGLDGPGMSTSAYDLGLFYKYAFADPTFADLVSAPKA 272
Query: 192 -----------GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ + N N + + GA G KTG+T + V +A + + L+
Sbjct: 273 TFPGHPAKPGERDDHPAYEMTNDNKLLYNYPGALGGKTGYTDDAQQTFVGAAERDGRRLV 332
Query: 241 AVIL-GALDRNTRNKVSASLLSMGFY 265
+L G + +A LL GF
Sbjct: 333 VTMLRGTRLPIAPWEQAAHLLDYGFS 358
>gi|289422674|ref|ZP_06424514.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
anaerobius 653-L]
gi|289156853|gb|EFD05478.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptostreptococcus
anaerobius 653-L]
Length = 423
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 79/358 (22%), Positives = 146/358 (40%), Gaps = 30/358 (8%)
Query: 5 LVIIAMAMLSNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
V I++++L + P + ++DT + ++ E P ASL+K+MT
Sbjct: 13 FVSISLSLLIGLSPRSMAYTRFSDRNSRHAIVVDTKSDRIVYEKDSLTPTAMASLSKMMT 72
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ F LK +K + + I + +N +G + LD L +++ SAND A+
Sbjct: 73 LLITFDDLKARKVSMHDQVKILASDVNRDGTNMKLNEGDIVGLDVLLDSMMIISANDSAL 132
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV----------QHGHYTTARDMA 171
AIA + K FV+ MN+ + +G++ T F N +G+ + + T ARD+A
Sbjct: 133 AIARHVGGDYKTFVKRMNDKASEIGMTKTVFYNPNGLPIYGEKYGKKITYENTTCARDVA 192
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKY---PNTNWAVGTFLGADGMKTGFTCASGFNI 228
ILS + ++ + + K + KK NTN + F +DG+KTGFT +G+ +
Sbjct: 193 ILSKFLYDNYEKELTNITSKKRFVNTKKQIDEENTNPILPLFKESDGLKTGFTDKAGYCL 252
Query: 229 VASAIQG-------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
S+ D LI V +GA + R + + L +
Sbjct: 253 AYSSRTNRGGENDVDNRLIGVSMGAPSKEARRDSAYNTLDFITQKYKTKNLYKKGEVLAS 312
Query: 282 QQNLSNEVPNI--SEEVCTTQKEIINYNTQMKEA-----KDKESHFIDFEKITLLKNK 332
+ ++ E + +++ + ++ KD + + I N
Sbjct: 313 KNINGMIKTDLCPDENISIIKRQDEKFKQRLVYKRVNILKDYDKPIAQMQLIDAWGNI 370
>gi|293610046|ref|ZP_06692347.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. SH024]
gi|292827278|gb|EFF85642.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. SH024]
Length = 348
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 57/251 (22%), Positives = 98/251 (39%), Gaps = 8/251 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ + ++D TG V+ + AS+TK+MTA V +
Sbjct: 93 TSGYNAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKVMTAVVTADARLNMSEEI 152
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T I + S+ST + G M L ++KS N A A+A + FV
Sbjct: 153 -TLEQIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVA 211
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN ++ LG+++TH+ + G+ + ++ARD+ IL + + + +
Sbjct: 212 AMNAKARALGMNSTHYYESTGL-DPRNVSSARDLGILVS-TASQYGLIRQFSTTPTYDFN 269
Query: 197 GK----KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
K NTN V + KTG+ +G +V + + V+LG
Sbjct: 270 LGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQA 329
Query: 252 RNKVSASLLSM 262
RN + +LL
Sbjct: 330 RNNDATNLLGW 340
>gi|257091370|ref|ZP_05585731.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis CH188]
gi|257417972|ref|ZP_05594966.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis T11]
gi|257000182|gb|EEU86702.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis CH188]
gi|257159800|gb|EEU89760.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis T11]
Length = 475
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/343 (20%), Positives = 135/343 (39%), Gaps = 43/343 (12%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ +
Sbjct: 42 KAAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVD 101
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSK 143
SN+ G + LK++ V S+N + +A + + FV MN +
Sbjct: 102 ISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAA 161
Query: 144 NLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
LG++ T + N G + +TARD+A L++ ++P+ +
Sbjct: 162 ELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEIT 221
Query: 189 -----QIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N++ + G DG+KTG + GFN +A+ QGD L
Sbjct: 222 NKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRL 281
Query: 240 IAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SN 287
I VILG R+ +LL + +K ++ + + +
Sbjct: 282 IEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYG 341
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
VP S+ + +T + + +K
Sbjct: 342 VVPKGSQPTFKLVAGQVQVDTPL--TLLNSTVQAPKVAYQEVK 382
>gi|312875038|ref|ZP_07735056.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
2053A-b]
gi|311089433|gb|EFQ47859.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners LEAF
2053A-b]
Length = 425
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 115/344 (33%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ + K T + S+
Sbjct: 59 ALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAINAGKISWQTKVMPSR 118
Query: 85 NASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
A + T+ + +++SAN A+ +A ++ + KKFV M
Sbjct: 119 EAIAVSKNPEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 178
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 179 QLLDWHISQAQIVTPSGLPNFTLGRDADSTKNADAENELSASDMGILIKHLLLEFPQVLD 238
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L K N N + DG+KTG T A+G + ++ ++
Sbjct: 239 TTRISKLNFPDGHNTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 297
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ ++ VI+GA + R + L + + N + + P
Sbjct: 298 GRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNRPI 357
Query: 292 ISEEVCTTQKEIINYNT--QMKEAKDKESHFIDFEKITLLKNKI 333
C Q I + ++ + + T + I
Sbjct: 358 NEVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 401
>gi|152971112|ref|YP_001336221.1| D-alanyl-D-alanine endopeptidase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150955961|gb|ABR77991.1| D-alanyl-D-alanine endopeptidase; penicillin-binding proteins 7 and
8 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
Length = 316
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/259 (20%), Positives = 99/259 (38%), Gaps = 12/259 (4%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + ++D T +I + PD AS+TK+MTA VV
Sbjct: 24 ALAKTPTAVTASQPEIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDA-- 81
Query: 71 EKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L +T+ + E S + S ++ + L L ++ S N A ++A
Sbjct: 82 --HLPLDEMLTVDISHTPEMKGIYSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPG 139
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQY 184
F++ MN ++ LG++ T ++ G+ + +TARD+ L + +
Sbjct: 140 GYDAFIRAMNAKAQALGMTHTRYVEPTGL-SVHNVSTARDLTKLLIASEQYPLIGQLSTT 198
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ NTN V KTGFT A+G ++ + + + V+
Sbjct: 199 KEETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVV 258
Query: 244 LGALDRNTRNKVSASLLSM 262
+ A + T ++ L +
Sbjct: 259 MDAFGKYTHFADASRLRTW 277
>gi|28379575|ref|NP_786467.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
WCFS1]
gi|28272415|emb|CAD65338.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
WCFS1]
Length = 444
Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/377 (15%), Positives = 138/377 (36%), Gaps = 45/377 (11%)
Query: 1 MRQFLVIIAMAMLSN----------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
+++ ++ + A+ + + + + +D +TG ++ + P
Sbjct: 7 LKKVMIALVAAVTFSTGGLGIAGADLQAQAASTPSISAKAAIAVDASTGQILYDKNSSKP 66
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
AS+TK+++ Y+V + E K I++SK ++ + T +++
Sbjct: 67 MAIASMTKMLSTYLVLKAIHEGKLSWNQKISVSKAVAKMSQNTEYANVPLLSTKTYSVRQ 126
Query: 111 LIV----KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----- 161
L SAN A+ +++ T KFV M T+K+ G++ +NA G+
Sbjct: 127 LYNATEIYSANAAITALGDAVAGTPHKFVSLMRKTAKSWGITDATIINASGLTNKEVGST 186
Query: 162 ----------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA 206
+ +A+D+A ++ ++ +D+P+ + I + K N N+
Sbjct: 187 IGYSNVAASAENEMSAQDVATVAQKLLSDYPEVLKTSSIAHAWFEKGTSSATKMDNRNYM 246
Query: 207 ------VGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGA----LDRNTRNKV 255
+ L DG+KTG + +G + +I V++ A R
Sbjct: 247 LKGLVKHYSALPVDGLKTGTSTKAGNAFTGTVKFSNGNRIITVVMHAGAANDSGTERFTQ 306
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
+A ++S ++N T + + + +++ ++ + Y +A
Sbjct: 307 TAEIMSYVYHNYTTTTINKNGKINGVKAVDVQDGKSLTSQLVSNSGATKIYLPTGTDASA 366
Query: 316 KESHFIDFEKITLLKNK 332
+ T
Sbjct: 367 VTGKVSLKKSATTDGKL 383
>gi|325697148|gb|EGD39035.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK160]
Length = 455
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 79/383 (20%), Positives = 147/383 (38%), Gaps = 58/383 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
++ L+++ +A L+++ P A+ + ++D +TG V+ E
Sbjct: 6 KKKLLLLGIAFLTSLAPLAVRADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWE 65
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 66 DNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAGV 125
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 126 DYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGAA 185
Query: 160 QH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 186 AVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEET 245
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 246 FETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDGE 305
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKEI 303
R+ +L+ + + +K ++ ++ Q V +E + +
Sbjct: 306 YYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENNV 365
Query: 304 INYNTQMKEAKDKESHFIDFEKI 326
+ +K K S + EK+
Sbjct: 366 LKAENGLKTLSSKISDEMKVEKV 388
>gi|325913382|ref|ZP_08175749.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII
60-B]
gi|325477308|gb|EGC80453.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners UPII
60-B]
Length = 434
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 120/344 (34%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ +K K T + S+
Sbjct: 68 ALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSR 127
Query: 85 NASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
A + T+ + +++SAN A+ +A ++ + KKFV M
Sbjct: 128 EAIAVSKNPEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRK 187
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 188 QLLDWHISQAQIVTPSGLPNFTLGRDADSNKNADAENELSASDMGILIKHLLLEFPQVLE 247
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L+ K K N N + DG+KTG T A+G + ++ ++
Sbjct: 248 TTRIAKLDFLDGRKTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 306
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTD--RKKINYIIKDFYQQNLSNEV 289
+ ++ VI+GA R + L + + N + K+ + + +
Sbjct: 307 GRRIVTVIIGARHLNGSDPARFVETKKLYAYFYNNYSLHIYKRWTQFPDKTLIKVKNRTI 366
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ + I+ ++ + + T + I
Sbjct: 367 NEVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 410
>gi|257080473|ref|ZP_05574834.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis E1Sol]
gi|256988503|gb|EEU75805.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis E1Sol]
Length = 475
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/343 (20%), Positives = 135/343 (39%), Gaps = 43/343 (12%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ +
Sbjct: 42 KAAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVD 101
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSK 143
SN+ G + LK++ V S+N + +A + + FV MN +
Sbjct: 102 ISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGDQPTDFVHLMNQKAA 161
Query: 144 NLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
LG++ T + N G + +TARD+A L++ ++P+ +
Sbjct: 162 ELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEIT 221
Query: 189 -----QIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N++ + G DG+KTG + GFN +A+ QGD L
Sbjct: 222 NKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRL 281
Query: 240 IAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SN 287
I VILG R+ +LL + +K ++ + + +
Sbjct: 282 IEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYG 341
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
VP S+ + +T + + +K
Sbjct: 342 VVPKGSQPTFKLVAGQVQVDTPL--TLLNSTVQAPKVAYQEVK 382
>gi|256960474|ref|ZP_05564645.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Merz96]
gi|256950970|gb|EEU67602.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis Merz96]
Length = 475
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/343 (20%), Positives = 135/343 (39%), Gaps = 43/343 (12%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ +
Sbjct: 42 KAAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVD 101
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSK 143
SN+ G + LK++ V S+N + +A + + FV MN +
Sbjct: 102 ISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAA 161
Query: 144 NLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
LG++ T + N G + +TARD+A L++ ++P+ +
Sbjct: 162 ELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEIT 221
Query: 189 -----QIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N++ + G DG+KTG + GFN +A+ QGD L
Sbjct: 222 NKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRL 281
Query: 240 IAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SN 287
I VILG R+ +LL + +K ++ + + +
Sbjct: 282 IEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYG 341
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
VP S+ + +T + + +K
Sbjct: 342 VVPKGSQPTFKLVAGQVQVDTPL--TLLNSTVQAPKVAYQEVK 382
>gi|256618116|ref|ZP_05474962.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis ATCC
4200]
gi|257088239|ref|ZP_05582600.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis D6]
gi|256597643|gb|EEU16819.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis ATCC
4200]
gi|256996269|gb|EEU83571.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis D6]
Length = 475
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/343 (20%), Positives = 135/343 (39%), Gaps = 43/343 (12%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ +
Sbjct: 42 KAAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVD 101
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSK 143
SN+ G + LK++ V S+N + +A + + FV MN +
Sbjct: 102 ISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAA 161
Query: 144 NLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
LG++ T + N G + +TARD+A L++ ++P+ +
Sbjct: 162 ELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEIT 221
Query: 189 -----QIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N++ + G DG+KTG + GFN +A+ QGD L
Sbjct: 222 NKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRL 281
Query: 240 IAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SN 287
I VILG R+ +LL + +K ++ + + +
Sbjct: 282 IEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYG 341
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
VP S+ + +T + + +K
Sbjct: 342 VVPKGSQPTFKLVAGQVQVDTPL--TLLNSTVQAPKVAYQEVK 382
>gi|187732796|ref|YP_001879537.1| D-alanyl-D-alanine endopeptidase [Shigella boydii CDC 3083-94]
gi|187429788|gb|ACD09062.1| penicillin-binding protein 7 [Shigella boydii CDC 3083-94]
Length = 313
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L P A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + I + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMAIFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|309803471|ref|ZP_07697565.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
LactinV 11V1-d]
gi|308164480|gb|EFO66733.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus iners
LactinV 11V1-d]
Length = 425
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 62/344 (18%), Positives = 119/344 (34%), Gaps = 36/344 (10%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D +G ++ AS++KL+T Y+ +K K T + S+
Sbjct: 59 ALNAKAAIIYDLKSGQIMYAKNIKQKLPVASMSKLLTIYLTLKAIKAGKLSWQTKVMPSR 118
Query: 85 NASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
A + T+ + +++SAN A+ +A ++ + KKFV M N
Sbjct: 119 EAIAVSKNPEYSNVPLQLGHQYTIKQLYQATLIQSANGAAMVLASAVAGSSKKFVGMMRN 178
Query: 141 TSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +S + G+ + +A DM IL + +FPQ +
Sbjct: 179 QLLDWHISQAQIVTPSGLPNFTLGRDADSSKNADAENELSASDMGILIKHLLLEFPQVLE 238
Query: 187 YFQIKGLEI----KGKKYPNTN-------WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+I L+ K K N N + DG+KTG T A+G + ++ ++
Sbjct: 239 TTRIAKLDFLDGRKTFKMVNWNLMLKGLSQYNEAYP-VDGLKTGTTDAAGACLASTLVKN 297
Query: 236 DQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+ ++ VI+GA + R + L + + N + + P
Sbjct: 298 GRRIVTVIIGARHLNGNDPARFVETKKLYAYFYNNYSLHIYKRWTQFPGKTLIKVKNRPI 357
Query: 292 ISEEVCTTQKEIINYNT--QMKEAKDKESHFIDFEKITLLKNKI 333
C Q I + ++ + + T + I
Sbjct: 358 NEVRACLYQDTGIWISKGQKLDAELSMNKMPMPIKVGTNIGKLI 401
>gi|329934886|ref|ZP_08284927.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
griseoaurantiacus M045]
gi|329305708|gb|EGG49564.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
griseoaurantiacus M045]
Length = 461
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/280 (16%), Positives = 91/280 (32%), Gaps = 18/280 (6%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ + D +G V+A PAS K++ A V K T +
Sbjct: 58 PAKLTARAWLVADHESGEVLAAFNAHKHLAPASTLKMLFADTVL-----GKFDRTDRHKV 112
Query: 83 SKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
++ S+ K + L L + + + AV + + K V M
Sbjct: 113 TREEIADVPTGSSLVGIKENITYTVEQLWLGVFLRSGNDAVHVLSHMNGGIAKTVAEMQA 172
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY----------FQI 190
+ +L T + G G ++A D+ + + + + +
Sbjct: 173 RAADLQALDTQVRSPDGFDHKGQVSSAYDLTLFARHGLKNDDFRRYCGTRTADFPAGGKK 232
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD-R 249
+ W + T+ G G+K G+T +G +A + ++L+ +L
Sbjct: 233 TFQIQNTDRLLTGAWGLETYEGLIGVKNGYTSHAGNTFTGAATRNGRTLLVSVLHPESGG 292
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
N K +A LL GF + K + ++ +
Sbjct: 293 NGVYKETAKLLDWGFAHVGRLKPVGMLVDPLSEGGAKRVP 332
>gi|313847624|emb|CBY16612.1| putative D-alanyl-d-alanine carboxypeptidase [Chlamydophila
psittaci RD1]
Length = 433
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 63/368 (17%), Positives = 127/368 (34%), Gaps = 44/368 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+R F + L +F + ++ TG V+ D PAS+
Sbjct: 2 IRVFFRFALLPFLVGLFTHPLYGHIVFPETRGNAVAVVHAETGKVLYAKDIDKRIYPASM 61
Query: 57 TKLMTAYVVFSFL-----KEKKAMLTTPITISKNASEYPPSNSTFKK------------G 99
TK+ TA + + +I+ A + S
Sbjct: 62 TKIATALFILKKHPDVLNRFIIVKPDAIASITPQAKKQSGYRSPPHWLETDGVTIQLQNK 121
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
++ + L++ SAND A A+A + + +F++ +N+ + +G + THF N HG+
Sbjct: 122 EEVSGWDLFHALLICSANDAANALAIACSGSVVEFMKQLNDFLREIGCAHTHFNNPHGLH 181
Query: 160 QHGHYTTARDMAILSWRIKTDF-------PQYMHYFQIKGLEIKGKKYPNT---NWAVGT 209
HYTTA D+ + + + + N +
Sbjct: 182 HPNHYTTAGDLTRIMREGLKEPLFRQVIRTTNYKMAPTNLSQERILNLTNKLILPGSTYY 241
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ A G KTG T +G N+V +A + +S+I + G + + +L F +
Sbjct: 242 YPPALGGKTGTTKDAGKNLVFAAKKHGRSIITIAAGYSVMSELYEDVIALCEGVFNEQPL 301
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH-------FID 322
R+ + + + + + ++ + Y+ E ++ ++ +
Sbjct: 302 RRYLIPPTEKYTLR------LGLLGKISIPLPHGVYYDFYASEGEEPKTLSFVPHATKLP 355
Query: 323 FEKITLLK 330
K LL
Sbjct: 356 IHKGDLLG 363
>gi|332365993|gb|EGJ43749.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK1059]
Length = 455
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 77/383 (20%), Positives = 147/383 (38%), Gaps = 58/383 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
++ L+++ + L+++ P + A+ + ++D +TG V+ E
Sbjct: 6 KKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWE 65
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 66 DNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAGV 125
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 126 DYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGAA 185
Query: 160 QH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 186 AVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEET 245
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G DGMKTG + FN +A+ +GDQ +IAVI+G D +
Sbjct: 246 FETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKRGDQRMIAVIMGVGDWSDQDGE 305
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKEI 303
R+ +L+ + + +K ++ ++ Q V ++ + +
Sbjct: 306 YYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTKPKVKVENNV 365
Query: 304 INYNTQMKEAKDKESHFIDFEKI 326
+ +K K S + EK+
Sbjct: 366 LKAENGLKTLSSKISDEMKVEKV 388
>gi|113969172|ref|YP_732965.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. MR-4]
gi|113883856|gb|ABI37908.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Shewanella sp. MR-4]
Length = 318
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/255 (21%), Positives = 97/255 (38%), Gaps = 10/255 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + + ++D T ++ + PD AS+TKLMTA V K
Sbjct: 37 ATAKKAPAKQQEVAANSALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTLDA----K 92
Query: 74 AMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ + I+ + E S + GS ++ + L L ++ S N A ++A K
Sbjct: 93 LPMDEKLAININDTKEMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHK 152
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F++ MN +K LG+ T ++ G+ + + + +L + + K
Sbjct: 153 AFIKAMNAKAKALGMKNTRYVEPTGLSEKNVSSARDLVVLLKASEGYPMLGQLSSTEKKT 212
Query: 193 LEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ KY NTN V KTGFT +G +V + + V+L A
Sbjct: 213 VTFGKPKYSLDFRNTNRLVYKDNWNIHLTKTGFTNEAGHCLVMRTEMAKRQVAFVVLDAY 272
Query: 248 DRNTRNKVSASLLSM 262
+ T + L +
Sbjct: 273 GKYTHMADANRLRNW 287
>gi|255970680|ref|ZP_05421266.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T1]
gi|255961698|gb|EET94174.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T1]
Length = 441
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/343 (20%), Positives = 135/343 (39%), Gaps = 43/343 (12%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ +
Sbjct: 8 KAAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVD 67
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSK 143
SN+ G + LK++ V S+N + +A + + FV MN +
Sbjct: 68 ISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAA 127
Query: 144 NLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
LG++ T + N G + +TARD+A L++ ++P+ +
Sbjct: 128 ELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEIT 187
Query: 189 -----QIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N++ + G DG+KTG + GFN +A+ QGD L
Sbjct: 188 NKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRL 247
Query: 240 IAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SN 287
I VILG R+ +LL + +K ++ + + +
Sbjct: 248 IEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYG 307
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
VP S+ + +T + + +K
Sbjct: 308 VVPKGSQPTFKLVAGQVQVDTPL--TLLNSTVQAPKVAYQEVK 348
>gi|296171457|ref|ZP_06852743.1| serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295894143|gb|EFG73903.1| serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 294
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 56/290 (19%), Positives = 107/290 (36%), Gaps = 31/290 (10%)
Query: 1 MRQFLVI---IAMAMLSNIFPFLSIA--------------ETNKLPYYTLLDTNTGHVIA 43
MR+ + + +A + + + A + + D ++G V+A
Sbjct: 1 MRKVMALRVGVAALLTVGVCGATAPASRADSMQPVGSVPIPDGPAQTWIVADLDSGQVLA 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
+ PAS K++ A V L + + ++ + K G T
Sbjct: 61 GRDQNVAHPPASTIKVLLALVTLDQ-----VSLDSTVVADAADTQVECNCVGVKPGRLYT 115
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG- 162
L L++ S ND A +A + + V MN + +LG ++TH G+ G
Sbjct: 116 ARQLLDGLLLVSGNDAANTLA-HMLGGPEATVAKMNAKAASLGATSTHAATPSGLDGPGG 174
Query: 163 -HYTTARDMAILSWRIKTDF---PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
+TA D+A++ + + + + N + + + GA G KT
Sbjct: 175 SGSSTAHDLAVIFRAAMANPVFAHITAEPSAMFPGDHGDQLITNQDELLQRYPGAIGGKT 234
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFY 265
GFT A+ V +A +G + L+ ++ + +A+L GF
Sbjct: 235 GFTDAARKTFVGAAARGGRRLVIAMMYGLVKAGGPSYWDQAATLFDWGFA 284
>gi|256761046|ref|ZP_05501626.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T3]
gi|256682297|gb|EEU21992.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T3]
Length = 441
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 71/343 (20%), Positives = 135/343 (39%), Gaps = 43/343 (12%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ +
Sbjct: 8 KAAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVD 67
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSK 143
SN+ G + LK++ V S+N + +A + + FV MN +
Sbjct: 68 ISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAA 127
Query: 144 NLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
LG++ T + N G + +TARD+A L++ ++P+ +
Sbjct: 128 ELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEIT 187
Query: 189 -----QIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N++ + G DG+KTG + GFN +A+ QGD L
Sbjct: 188 NKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRL 247
Query: 240 IAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SN 287
I VILG R+ +LL + +K ++ + + +
Sbjct: 248 IEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYG 307
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
VP S+ + +T + + +K
Sbjct: 308 VVPKGSQPTFKLVAGQVQVDTPL--TLLNSTVQAPKVAYQEVK 348
>gi|327461601|gb|EGF07932.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK1]
gi|327473321|gb|EGF18741.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sanguinis
SK408]
Length = 455
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 77/383 (20%), Positives = 146/383 (38%), Gaps = 58/383 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIAE 44
++ L+++ + L+++ P + A+ + ++D +TG V+ E
Sbjct: 6 KKKLLLLGIVFLTSLAPLAARADELVDMAKKMYPHDNVQAINRPKSSLVIDGSTGDVVWE 65
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +KE K T IT + +N
Sbjct: 66 DNVDEVRDPASMSKLMTLYLVFEAIKEGKISEKTVITATPQDQATANIYEISNNKIVAGV 125
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ ++ S + F+ MN ++ LG++ T + NA G
Sbjct: 126 DYTVSELITMTIVPSSNATTVMLANYLSDNDPDAFLDRMNAKAQELGMTNTKWFNASGAA 185
Query: 160 QH---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL++ P+ ++Y + +K
Sbjct: 186 AVSFKGYYNPQNYDNYASNQTTARDLAILAYNFVNHHPEILNYTNKAKVTVKAGTPYEET 245
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G DGMKTG + FN +A+ + DQ +IAVI+G D +
Sbjct: 246 FETYNYSLPGAKYALKGVDGMKTGSSPNGAFNYIATIKREDQRMIAVIMGVGDWSDQDGE 305
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS------NEVPNISEEVCTTQKEI 303
R+ +L+ + + +K ++ ++ Q V +E + +
Sbjct: 306 YYRHPFGNALIEKAYADYEYKKLLSKGEQEIDGQKYKLPEDFYATVKKGTEPKVKVENNV 365
Query: 304 INYNTQMKEAKDKESHFIDFEKI 326
+ +K K S + EK+
Sbjct: 366 LKAENGLKTLSSKISDEMKVEKV 388
>gi|317057306|ref|YP_004105773.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
albus 7]
gi|315449575|gb|ADU23139.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
albus 7]
Length = 483
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/402 (17%), Positives = 134/402 (33%), Gaps = 67/402 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT---------------------LLDTNTG 39
M++ L +IA + + + + T + +++ ++G
Sbjct: 1 MKKKLRVIAALLCAALIFADMGSFTASALSFVPTTVDADGERSEVKLYSDCVYMVNMDSG 60
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT-----ISKNASEYPPSNS 94
V+ + + PASLTKLMTA V+ L ++ L + + + +
Sbjct: 61 EVVVDINSEKEVPPASLTKLMTAVVLLDELGGDESTLRNKMMSAGTEAFDELYDTGAATA 120
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
+ +++ + L L++ SA + A IA ++ + FV MN LGL THF N
Sbjct: 121 DIQPNESVSAYDLLAALLIPSACEAANIIAINVGENISGFVDMMNAKVSELGLKHTHFSN 180
Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN------------ 202
AHG+ +Y+TA+D++ + +P + + +
Sbjct: 181 AHGLFTQQNYSTAKDISTICRYALDKYPVFEELVGSPSFTMAPTDFHPEGTYIASTDYMI 240
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL-------------DR 249
+ + G+KTG T ++G + A+ + V +GA D
Sbjct: 241 NEYTKYYYAKCRGIKTGTTESAGRCFASYAVSDGVRYLVVTMGAPMEKLAEDVKKGEADP 300
Query: 250 NTRNK---------VSASLLSMGFYNKTDRKKINY-----IIKDFYQQNLSNEVPNISEE 295
+ +L F + IN +K Y + +
Sbjct: 301 ESVYADDVVYYSFIDHINLYEWAFDTLVQKDFINESSEVRDVKVGYGKKQDYANLKPANG 360
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN--KITK 335
I K +++ EK +L I K
Sbjct: 361 YSRMWPVNIPIEDVEKRITVRDNIVAPVEKGDVLGTMELIYK 402
>gi|322506467|gb|ADX01921.1| pbpG [Acinetobacter baumannii 1656-2]
gi|323516346|gb|ADX90727.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii
TCDC-AB0715]
Length = 335
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + ++D TG V+ + AS+TKLMTA V + T
Sbjct: 84 NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEI-TLE 142
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I + S+ST + G M L ++KS N A A+A + FV MN
Sbjct: 143 QIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNA 202
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
++ LG++ATH+ + G+ + ++ARD+ IL+ + + + +
Sbjct: 203 KARALGMNATHYYESTGL-DPRNVSSARDLGILAS-TASQYGLIRQFSTTPTYDFNLGYR 260
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTG+ +G +V + + V+LG RN
Sbjct: 261 VLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQARNND 320
Query: 256 SASLLSM 262
+ +LL
Sbjct: 321 ATNLLGW 327
>gi|213155690|ref|YP_002317735.1| D-alanyl-D-alanine carboxypeptidase family protein [Acinetobacter
baumannii AB0057]
gi|215484932|ref|YP_002327171.1| Penicillin-binding protein 7 precursor (PBP-7) [Acinetobacter
baumannii AB307-0294]
gi|239502064|ref|ZP_04661374.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter baumannii
AB900]
gi|301346537|ref|ZP_07227278.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter baumannii
AB056]
gi|301512073|ref|ZP_07237310.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter baumannii
AB058]
gi|301594839|ref|ZP_07239847.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter baumannii
AB059]
gi|213054850|gb|ACJ39752.1| D-alanyl-D-alanine carboxypeptidase family protein [Acinetobacter
baumannii AB0057]
gi|213986566|gb|ACJ56865.1| Penicillin-binding protein 7 precursor (PBP-7) [Acinetobacter
baumannii AB307-0294]
Length = 335
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + ++D TG V+ + AS+TKLMTA V + T
Sbjct: 84 NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEI-TLE 142
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I + S+ST + G M L ++KS N A A+A + FV MN
Sbjct: 143 QIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNA 202
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
++ LG++ATH+ + G+ + ++ARD+ IL+ + + + +
Sbjct: 203 KARALGMNATHYYESTGL-DPRNVSSARDLGILAS-TASQYGLIRQFSTTPTYDFNLGYR 260
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTG+ +G +V + + V+LG RN
Sbjct: 261 VLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQARNND 320
Query: 256 SASLLSM 262
+ +LL
Sbjct: 321 ATNLLGW 327
>gi|332851496|ref|ZP_08433493.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6013150]
gi|332866804|ref|ZP_08437208.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6013113]
gi|194474667|gb|ACF74453.1| D-alanyl-D-alanine endopeptidase penicillin-binding protein 7/8
[Acinetobacter baumannii]
gi|332729949|gb|EGJ61280.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6013150]
gi|332734412|gb|EGJ65532.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6013113]
Length = 340
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + ++D TG V+ + AS+TKLMTA V + T
Sbjct: 89 NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEI-TLE 147
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I + S+ST + G M L ++KS N A A+A + FV MN
Sbjct: 148 QIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNA 207
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
++ LG++ATH+ + G+ + ++ARD+ IL+ + + + +
Sbjct: 208 KARALGMNATHYYESTGL-DPRNVSSARDLGILAS-TASQYGLIRQFSTTPTYDFNLGYR 265
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTG+ +G +V + + V+LG RN
Sbjct: 266 VLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQARNND 325
Query: 256 SASLLSM 262
+ +LL
Sbjct: 326 ATNLLGW 332
>gi|184156580|ref|YP_001844919.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
gi|332874936|ref|ZP_08442787.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6014059]
gi|183208174|gb|ACC55572.1| D-alanyl-D-alanine carboxypeptidase [Acinetobacter baumannii ACICU]
gi|332736879|gb|EGJ67855.1| serine-type D-Ala-D-Ala carboxypeptidase [Acinetobacter baumannii
6014059]
Length = 340
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + ++D TG V+ + AS+TKLMTA V + T
Sbjct: 89 NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEI-TLE 147
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I + S+ST + G M L ++KS N A A+A + FV MN
Sbjct: 148 QIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNA 207
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
++ LG++ATH+ + G+ + ++ARD+ IL+ + + + +
Sbjct: 208 KARALGMNATHYYESTGL-DPRNVSSARDLGILAS-TASQYGLIRQFSTTPTYDFNLGYR 265
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTG+ +G +V + + V+LG RN
Sbjct: 266 VLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQARNND 325
Query: 256 SASLLSM 262
+ +LL
Sbjct: 326 ATNLLGW 332
>gi|329999103|ref|ZP_08303309.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. MS 92-3]
gi|328538464|gb|EGF64581.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. MS 92-3]
Length = 318
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/259 (20%), Positives = 99/259 (38%), Gaps = 12/259 (4%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + ++D T +I + PD AS+TK+MTA VV
Sbjct: 26 ALAKTPTAVTASQPEIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDA-- 83
Query: 71 EKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L +T+ + E S + S ++ + L L ++ S N A ++A
Sbjct: 84 --HLPLDEMLTVDISHTPEMKGIYSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPG 141
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQY 184
F++ MN ++ LG++ T ++ G+ + +TARD+ L + +
Sbjct: 142 GYDAFIRAMNAKAQALGMTHTRYVEPTGL-SVHNVSTARDLTKLLIASEQYPLIGQLSTT 200
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ NTN V KTGFT A+G ++ + + + V+
Sbjct: 201 KEETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVV 260
Query: 244 LGALDRNTRNKVSASLLSM 262
+ A + T ++ L +
Sbjct: 261 MDAFGKYTHFADASRLRTW 279
>gi|300769513|ref|ZP_07079399.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308181803|ref|YP_003925931.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|300492928|gb|EFK28110.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308047294|gb|ADN99837.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 444
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/377 (15%), Positives = 138/377 (36%), Gaps = 45/377 (11%)
Query: 1 MRQFLVIIAMAMLSN----------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
+++ ++ + A+ + + + + +D +TG ++ + P
Sbjct: 7 LKKVMIALVAAVTFSTAGLGIAGADLQAQAASTPSISAKAAIAVDASTGQILYDKNSSKP 66
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
AS+TK+++ Y+V + E K I++SK ++ + T +++
Sbjct: 67 MAIASMTKMLSTYLVLKAIHEGKLSWNQKISVSKAVAKMSQNTEYANVPLLSTKTYSVRQ 126
Query: 111 LIV----KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----- 161
L SAN A+ +++ T KFV M T+K+ G++ +NA G+
Sbjct: 127 LYNATEIYSANAAITALGDAVAGTPHKFVSLMRKTAKSWGITDATIINASGLTNKEVGST 186
Query: 162 ----------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA 206
+ +A+D+A ++ ++ +D+P+ + I + K N N+
Sbjct: 187 IGYSNVAASAENEMSAQDVATVAQKLLSDYPEVLKTSSIAHAWFEKGTSSATKMDNRNYM 246
Query: 207 ------VGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGA----LDRNTRNKV 255
+ L DG+KTG + +G + +I V++ A R
Sbjct: 247 LKGLVKHYSALPVDGLKTGTSTKAGNAFTGTVKFSNGNRIITVVMHAGAANDSGTERFTQ 306
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
+A ++S ++N T + + + +++ ++ + Y +A
Sbjct: 307 TAEIMSYVYHNYTTTTINKNGKINGVKAVDVQDGKSLTSQLVSNSGATKIYLPTGTDASA 366
Query: 316 KESHFIDFEKITLLKNK 332
+ T
Sbjct: 367 VTGKVSLKKSATTDGKL 383
>gi|291451721|ref|ZP_06591111.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
gi|291354670|gb|EFE81572.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
Length = 413
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/277 (16%), Positives = 94/277 (33%), Gaps = 24/277 (8%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ + + D G V+A + PAS K++ A V L + +
Sbjct: 64 PKKLTGRSWIVADAENGDVLAAHNAHWKLPPASTMKMLFADTVLPKLPK-----DEKHLV 118
Query: 83 SKNASEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ + S+ K + L L + S+ + AV + ++ + V MN
Sbjct: 119 TDEELAGVGAGSSLVGVKEDQTYTVHDLWLGVFLSSGNDAVHVLSAMNGGIDRTVADMNA 178
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---- 196
++ L TH ++ G G ++A D+ +++ + + +
Sbjct: 179 RAEELQALDTHVVSPDGYDAKGQLSSAYDLTLIARSGMQEKDFREYCATVSAEFPGEKKK 238
Query: 197 -----GKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
NTN + + G G+K G T +G A +G + L+ ++
Sbjct: 239 GKKREHFGIQNTNRLLTGAYGMERYEGIAGVKNGNTTNAGATFTGVAERGGRVLLVTVMN 298
Query: 246 --ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
+ N + +A L GF + + ++
Sbjct: 299 PDGKESNAVYQETARLFDWGFQAAEKAEPVGTLVPPL 335
>gi|239979864|ref|ZP_04702388.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces albus
J1074]
Length = 408
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/277 (16%), Positives = 94/277 (33%), Gaps = 24/277 (8%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ + + D G V+A + PAS K++ A V L + +
Sbjct: 59 PKKLTGRSWIVADAENGDVLAAHNAHWKLPPASTMKMLFADTVLPKLPK-----DEKHLV 113
Query: 83 SKNASEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ + S+ K + L L + S+ + AV + ++ + V MN
Sbjct: 114 TDEELAGVGAGSSLVGVKEDQTYTVHDLWLGVFLSSGNDAVHVLSAMNGGIDRTVADMNA 173
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---- 196
++ L TH ++ G G ++A D+ +++ + + +
Sbjct: 174 RAEELQALDTHVVSPDGYDAKGQLSSAYDLTLIARSGMQEKDFREYCATVSAEFPGEKKK 233
Query: 197 -----GKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
NTN + + G G+K G T +G A +G + L+ ++
Sbjct: 234 GKKREHFGIQNTNRLLTGAYGMERYEGIAGVKNGNTTNAGATFTGVAERGGRVLLVTVMN 293
Query: 246 --ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
+ N + +A L GF + + ++
Sbjct: 294 PDGKESNAVYQETARLFDWGFQAAEKAEPVGTLVPPL 330
>gi|167551122|ref|ZP_02344877.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205324035|gb|EDZ11874.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 315
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 105/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F L PF A ++D NT VI N+PD
Sbjct: 1 MLKFRASFLSLALMLAVPFAPQAVAKTAATTAASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV +L I+ + S + S ++ N L
Sbjct: 61 LVRPIASITKLMTAMVVLDARLPLNEILKVDISQTPE---MKGVYSRVRLNSEISRKNML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A F++ MN +K LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHYYPGGYDAFIKAMNAKAKALGMTHTRFVEPTGL-SIHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|134296314|ref|YP_001120049.1| murein-DD-endopeptidase [Burkholderia vietnamiensis G4]
gi|134139471|gb|ABO55214.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Burkholderia vietnamiensis G4]
Length = 383
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 98/247 (39%), Gaps = 7/247 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D NTG + + AS++KLMTA VV
Sbjct: 121 TPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDSKAPMT---DQI 177
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 178 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 237
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+K+LG++ THF N+ G+ + + +++ + + + + +
Sbjct: 238 AKAKSLGMNDTHFENSTGLSSSNVSSARDLVKMVNAAYQYPLIRQFSTDRTYDVNTGKRT 297
Query: 200 --YPNTNW-AVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN G G KTGF +G +V A + ++ V+L + + +R
Sbjct: 298 LVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPMVMVLLDSFGKYSRFAD 357
Query: 256 SASLLSM 262
++ L +
Sbjct: 358 ASRLRNW 364
>gi|256962967|ref|ZP_05567138.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis
HIP11704]
gi|256953463|gb|EEU70095.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis
HIP11704]
Length = 475
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 43/343 (12%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ +
Sbjct: 42 KAAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVD 101
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSK 143
SN+ G + LK++ V S+N + +A + + FV MN +
Sbjct: 102 ISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAA 161
Query: 144 NLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
LG++ T + N G + +TARD+A L++ ++P+ +
Sbjct: 162 ELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEIT 221
Query: 189 -----QIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N++ + G DG+KTG + GFN +A+ QGD L
Sbjct: 222 NKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRL 281
Query: 240 IAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SN 287
I VILG R+ +LL + +K ++ + + +
Sbjct: 282 IEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYG 341
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+P S+ + +T + + +K
Sbjct: 342 VIPKGSQPTFKLVAGQVQVDTPL--TLLNSTVQAPKVAYQEVK 382
>gi|221198438|ref|ZP_03571484.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
multivorans CGD2M]
gi|221208885|ref|ZP_03581882.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
multivorans CGD2]
gi|221171168|gb|EEE03618.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
multivorans CGD2]
gi|221182370|gb|EEE14771.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
multivorans CGD2M]
Length = 381
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 9/248 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D NTG + + AS++KLMTA VV +
Sbjct: 119 TPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDSKAPMTEQIEVT 178
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 179 D---EDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 235
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF--PQYMHYFQIKGLEIKG 197
+K LG++ THF N+ G+ + ++ARD+ + ++ + K
Sbjct: 236 AKAKALGMTDTHFENSTGL-SSSNVSSARDLVKMVNAAYQYPLIRKFSTDRTYEVYTGKR 294
Query: 198 KKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N+ A+ G KTGF +G +V A + ++ V+L + + +R
Sbjct: 295 NLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPVVMVLLDSFGKYSRFA 354
Query: 255 VSASLLSM 262
++ L +
Sbjct: 355 DASRLRNW 362
>gi|161524312|ref|YP_001579324.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
multivorans ATCC 17616]
gi|189350932|ref|YP_001946560.1| D-alanyl-D-alanine endopeptidase [Burkholderia multivorans ATCC
17616]
gi|221214784|ref|ZP_03587753.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
multivorans CGD1]
gi|160341741|gb|ABX14827.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
multivorans ATCC 17616]
gi|189334954|dbj|BAG44024.1| D-alanyl-D-alanine endopeptidase [Burkholderia multivorans ATCC
17616]
gi|221165323|gb|EED97800.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
multivorans CGD1]
Length = 381
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 9/248 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D NTG + + AS++KLMTA VV +
Sbjct: 119 TPDALALRSSVAYVVDQNTGEPLFDKNSHAVVPIASISKLMTAMVVLDSKAPMTEQIEVT 178
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 179 D---EDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 235
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF--PQYMHYFQIKGLEIKG 197
+K LG++ THF N+ G+ + ++ARD+ + ++ + K
Sbjct: 236 AKAKALGMTDTHFENSTGL-SSSNVSSARDLVKMVNAAYQYPLIRKFSTDRTYEVYTGKR 294
Query: 198 KKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N+ A+ G KTGF +G +V A + ++ V+L + + +R
Sbjct: 295 NLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGRPVVMVLLDSFGKYSRFA 354
Query: 255 VSASLLSM 262
++ L +
Sbjct: 355 DASRLRNW 362
>gi|262040149|ref|ZP_06013402.1| penicillin-binding protein 7 [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259042502|gb|EEW43520.1| penicillin-binding protein 7 [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 318
Score = 124 bits (310), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/259 (20%), Positives = 99/259 (38%), Gaps = 12/259 (4%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + ++D T +I + PD AS+TK+MTA VV
Sbjct: 26 ALAKTPTAVTASQPEIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDA-- 83
Query: 71 EKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L +T+ + E S + S ++ + L L ++ S N A ++A
Sbjct: 84 --HLPLDEMLTVDISHTPEMKGIYSRVRLNSQISRRDMLLLALMSSENRAAASLAHHYPG 141
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQY 184
F++ MN ++ LG++ T ++ G+ + +TARD+ L + +
Sbjct: 142 GYDAFIRAMNAKAQALGMTHTRYVEPTGL-SVHNVSTARDLTKLLIASEQYPLIGQLSTT 200
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ NTN V KTGFT A+G ++ + + + V+
Sbjct: 201 KEETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVV 260
Query: 244 LGALDRNTRNKVSASLLSM 262
+ A + T ++ L +
Sbjct: 261 MDAFGKYTHFADASRLRTW 279
>gi|257420425|ref|ZP_05597415.1| DD-carboxypeptidase [Enterococcus faecalis X98]
gi|257162249|gb|EEU92209.1| DD-carboxypeptidase [Enterococcus faecalis X98]
Length = 475
Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats.
Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 43/343 (12%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ +
Sbjct: 42 KAAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVD 101
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSK 143
SN+ G + LK++ V S+N + +A + + FV MN +
Sbjct: 102 ISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAA 161
Query: 144 NLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
LG++ T + N G + +TARD+A L++ ++P+ +
Sbjct: 162 ELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEIT 221
Query: 189 -----QIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N++ + G DG+KTG + GFN +A+ QGD L
Sbjct: 222 NKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRL 281
Query: 240 IAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SN 287
I VILG R+ +LL + +K ++ + + +
Sbjct: 282 IEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYG 341
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
VP ++ + +T + + +K
Sbjct: 342 VVPKGNQPTFKLVAGQVQVDTPL--TLLNSTVQAPKVAYQEVK 382
>gi|117621185|ref|YP_858159.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117562592|gb|ABK39540.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 275
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 8/243 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ ++D TG + + AS+TKLMTA VV ++ LT
Sbjct: 33 QLQSSSALVMDVGTGKTLYQKNATRVRPIASITKLMTALVVLDARQDLGQTLTIDQNDRD 92
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
G+ ++ +AL L ++ S N +A A+A FV+ MNN +K
Sbjct: 93 AIKHTYSRVRM---GTQVSRRDALHLALMSSENRMASALARHYPGGRPAFVRAMNNKAKQ 149
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY---- 200
LG+ + F ++ G+ T +++ + + K + + Y
Sbjct: 150 LGMRNSRFYDSTGLSTRNVSTAQDLAKLIAAAYRQPLIREFTQDTSKDMRFRTPAYSLMF 209
Query: 201 PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN V KTGFT +G ++ A ++ L V+L ++ + T + +
Sbjct: 210 NNTNPLVKNPDWDVRLSKTGFTDEAGRCLLMRAKPDNRELAIVLLNSVGKRTPVGDANRI 269
Query: 260 LSM 262
Sbjct: 270 RKW 272
>gi|256958405|ref|ZP_05562576.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis DS5]
gi|257078283|ref|ZP_05572644.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis JH1]
gi|256948901|gb|EEU65533.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis DS5]
gi|256986313|gb|EEU73615.1| D-alanyl-D-alanine carboxypeptidase [Enterococcus faecalis JH1]
Length = 475
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 43/343 (12%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ +
Sbjct: 42 KAAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVD 101
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSK 143
SN+ G + LK++ V S+N + +A + + FV MN +
Sbjct: 102 ISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAA 161
Query: 144 NLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
LG++ T + N G + +TARD+A L++ ++P+ +
Sbjct: 162 ELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEIT 221
Query: 189 -----QIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N++ + G DG+KTG + GFN +A+ QGD L
Sbjct: 222 NKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRL 281
Query: 240 IAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SN 287
I VILG R+ +LL + +K ++ + + +
Sbjct: 282 IEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYG 341
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+P S+ + +T + + +K
Sbjct: 342 VIPKGSQPTFKLVAGQVQVDTPL--TLLNSTVQAPKVAYQEVK 382
>gi|282860935|ref|ZP_06270001.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
sp. ACTE]
gi|282564671|gb|EFB70207.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
sp. ACTE]
Length = 412
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 46/282 (16%), Positives = 88/282 (31%), Gaps = 26/282 (9%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFLKEKKAM 75
+ + + + D +G V+A + PAS K++ T
Sbjct: 57 APVLPKDLTGRSWIVADAESGDVLAAHNSHWRLPPASTLKMLFADTVLPALQPTTSYLVK 116
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ + S+ K + L L + + + AV + S+ V
Sbjct: 117 EQDLAGVGE------GSSLVGVKEDHSYTVHDLWLGVFLQSGNDAVHVLASMYGGVDATV 170
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ---------YMH 186
M + L T ++ G ++A D+ + +
Sbjct: 171 AAMQRHAYELQALDTRVVSPDGYDAQNQVSSAYDLTLFARSGLQKADFREYAATASAQFP 230
Query: 187 YFQIKGLEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
Q KG + + NTN V + G G+K G+T +G A + + L+
Sbjct: 231 GEQEKGKKRQSFGIQNTNRLLTGADGVEQYQGIAGVKNGYTTHAGNTFTGVAERNGRVLL 290
Query: 241 AVILGALDRNTR--NKVSASLLSMGFYNKTDRKKINYIIKDF 280
++ + K +ASLL GF K + ++
Sbjct: 291 VTVMHPDSEVSHAVYKEAASLLDWGFSASGKVKPVGTLVPPK 332
>gi|78186778|ref|YP_374821.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium luteolum DSM
273]
gi|78166680|gb|ABB23778.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium luteolum DSM
273]
Length = 301
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 71/279 (25%), Positives = 123/279 (44%), Gaps = 21/279 (7%)
Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPA 54
M++F L + A L + F S AE ++ P Y + D V + PA
Sbjct: 1 MKRFGLSLAALFFAALVSQLSFSSPAEASRPPVIDSYIVKDLGYSRVFMQKDTSRLIRPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTK++TA + K L + IS A+ P+ + F+ G + L + +K +V
Sbjct: 61 SLTKILTAVIALESGK-----LDQVVVISPEATGVEPTKAGFRPGDRILLLDLVKASMVN 115
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHYTTARDMA 171
S+ND A AIA L + +KFV+ MN ++ +G+ ++ F N G G+Y+TA D+
Sbjct: 116 SSNDAAFAIAIHLSGSVEKFVRAMNYRARAIGMKSSTFTNPAGFDTGRYTGNYSTAEDLL 175
Query: 172 ILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L+ + + N + + A G+KTGFT ++G
Sbjct: 176 ALTEYAIHNPLFNEITMLESIVVRDKRSGRYYLLRTHNKLLARYPYAVGIKTGFTRSAGK 235
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++A A + ++ ++ V+L A R ++ + F
Sbjct: 236 CLIARARKENRDMLLVMLNAKG--DRWTMAEEMFEKAFA 272
>gi|260662683|ref|ZP_05863577.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum
28-3-CHN]
gi|260552764|gb|EEX25763.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum
28-3-CHN]
Length = 417
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 73/372 (19%), Positives = 143/372 (38%), Gaps = 43/372 (11%)
Query: 1 MRQF----------LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
MR+ +V + ++ + + T +D TG V+ E
Sbjct: 1 MRKLRRVCFHLLLVVVTFTTVLATSAGAVANASSTVDARAAITIDAETGQVLYEKNATKR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDN 106
+ AS+ K++T V+ +++ K I ISK +++ SN +G + T+ +
Sbjct: 61 YPIASVIKILTLAVIEQDIEQGKLKWDQKIKISKEVAKVANDWRFSNVQLNEGESYTVKS 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG---- 162
++ +++ SA+ A A+A + + F Q M +K G++ N G+
Sbjct: 121 LVESMMIVSADGSAEALALASAGSTAAFNQKMQAVAKEAGVTDAKIYNMIGLANGDLGEM 180
Query: 163 ----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV 207
+ +A+D+A ++ + +P + + K + + + N N +
Sbjct: 181 RLKNVSKKAENQLSAKDVAKIARYLVEKYPSVLEITKQKFVNFQVSDSQQYEMVNINSML 240
Query: 208 GTFL------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLL 260
DG+KTG T +SG+ V + + LI V+L N + KV+ +++
Sbjct: 241 PQNAAASTHGEVDGLKTGMTDSSGYCFVGTGTFNGRRLITVVLKVPGEYNNQFKVTDAMI 300
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ DF + S V + ++ T + T + AK+
Sbjct: 301 GQVLDKYQYLTVNK--LSDFKKGVQSVTVAHAEKKGPKTVGLTLKKATTLWLAKNTSLKK 358
Query: 321 IDFEKITLLKNK 332
D E I L KNK
Sbjct: 359 ADVELI-LDKNK 369
>gi|307130596|ref|YP_003882612.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
gi|306528125|gb|ADM98055.1| D-alanyl-D-alanine carboxypeptidase [Dickeya dadantii 3937]
Length = 317
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/244 (21%), Positives = 92/244 (37%), Gaps = 8/244 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D V+ PD AS+TKLMTA VV + ++ I+ +
Sbjct: 39 QEIASGSAMVVDLRNNEVLYSANPDVVVPIASVTKLMTAMVVLDANQPLDERISVDISQT 98
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
K S + GS ++ + L L ++ S N A ++A + F+ MN ++
Sbjct: 99 KE---MKGVYSRVRLGSEISRHDMLLLALMSSENRAAASLAHHYRGGYQAFIAAMNAKAR 155
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--- 200
LG++ T ++ G+ T +L + + Q K Y
Sbjct: 156 ALGMTHTRYVEPTGLSTSNVSTARDLTKLLIASRQYPLLSQLSTTQEKNAVFTQPSYSLP 215
Query: 201 -PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
NTN + KTGFT +G +V + + + V+L A + T +
Sbjct: 216 FRNTNHLIYRQDWNIQLTKTGFTNQAGHCLVMRTVINGRPVSLVVLDAFGKFTHFADANR 275
Query: 259 LLSM 262
L +
Sbjct: 276 LRNW 279
>gi|260551083|ref|ZP_05825287.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. RUH2624]
gi|260405850|gb|EEW99338.1| D-alanyl-D-alanine endopeptidase [Acinetobacter sp. RUH2624]
Length = 348
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 100/247 (40%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + ++D TG V+ + AS+TKLMTA V + T
Sbjct: 97 NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEI-TLE 155
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I + S+ST + G M L ++KS N A A+A + FV MN
Sbjct: 156 QIDFAGANGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVAAMNA 215
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
+++LG++ATH+ + G+ + ++ARD+ IL+ + + + +
Sbjct: 216 KARSLGMNATHYYESTGL-DPRNVSSARDLGILAS-TASQYGLIRQFSTTPTYDFNLGYR 273
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTG+ +G +V + + V+LG RN
Sbjct: 274 VLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQARNND 333
Query: 256 SASLLSM 262
+ +LL
Sbjct: 334 ATNLLGW 340
>gi|310827089|ref|YP_003959446.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium limosum KIST612]
gi|308738823|gb|ADO36483.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium limosum KIST612]
Length = 314
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 67/272 (24%), Positives = 109/272 (40%), Gaps = 24/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKL-------------PYYTLLDTNTGHVIAENYPDHP 50
FL+I +++ +F F +I+ L+ + G V+ +
Sbjct: 24 FLIIAGLSLYMVVFAFKAISPGGPAHPVNAMGSAGLYSESAVLMRLDGGEVLFQKNSGEK 83
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PASLTKLMT V+ ++ +T P + S S + F G +TL + L
Sbjct: 84 IYPASLTKLMTVLVILDQFEDLDHTVTLPGEVFDCLSGSGASVAGFLPGEQLTLRDLLYG 143
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
++ S D + +A + +E+ F + MN + LG++ THF NA G+ GHYTT DM
Sbjct: 144 CVLPSGADAVMGLACATAGSEENFAELMNGKAAELGMAHTHFKNATGLHDPGHYTTVMDM 203
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---------NTNWAVGTFLGAD--GMKTG 219
A+L + ++P N+ G G KTG
Sbjct: 204 AVLLRAGLKNPDFRELLTTFDYQTEPTNRHPGGVGLSSTLNSLMGTPYPDGVTLLGGKTG 263
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+T +G + A + + IAV GA +
Sbjct: 264 YTEEAGLCLATLAEKDGREYIAVTAGAPGSHE 295
>gi|296136730|ref|YP_003643972.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thiomonas
intermedia K12]
gi|295796852|gb|ADG31642.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thiomonas
intermedia K12]
Length = 493
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 54/259 (20%), Positives = 101/259 (38%), Gaps = 14/259 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ + ++D T V+ D ASLTKLMTA V+ +
Sbjct: 201 STAANDDPLSLRSGSALVVDEGTDRVLLSKNADTARPIASLTKLMTAAVILDAHQP---- 256
Query: 76 LTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ I I+ + S+S + G+ +T + LKL ++ S N A A+A + F
Sbjct: 257 MDQVIEITDADIDTLKWSSSRLRPGTKLTREELLKLALMSSENRAAHALARNYPGGLAAF 316
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-PQYMHYFQIKGL 193
+ MN +++LG++ T ++ G+ + +TA D+A+L + +
Sbjct: 317 IPAMNAKARSLGMNTTRYVEPTGL-SPQNESTAHDLALLVKAAYHYPLIREFSTHPESEV 375
Query: 194 EIKGKKYPNTNWAVGTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
E+ + N F KTG+ +G +V + +I V+L A +
Sbjct: 376 EVGPRTLQFRNTDHLVFNRGWDILLQKTGYINEAGHCLVLQTKFEGRRVIVVLLDAWGKY 435
Query: 251 TRNKVSASLLSM----GFY 265
+ + + + GF
Sbjct: 436 SHFGDAQRIRTWLEAKGFD 454
>gi|294340887|emb|CAZ89282.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
[Thiomonas sp. 3As]
Length = 457
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 54/259 (20%), Positives = 101/259 (38%), Gaps = 14/259 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ + ++D T V+ D ASLTKLMTA V+ +
Sbjct: 165 STAANDDPLSLRSGSALVVDEGTDRVLLSKNADTARPIASLTKLMTAAVILDAHQP---- 220
Query: 76 LTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ I I+ + S+S + G+ +T + LKL ++ S N A A+A + F
Sbjct: 221 MDQVIEITDADIDTLKWSSSRLRPGTKLTREELLKLALMSSENRAAHALARNYPGGLAAF 280
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-PQYMHYFQIKGL 193
+ MN +++LG++ T ++ G+ + +TA D+A+L + +
Sbjct: 281 IPAMNAKARSLGMNTTRYVEPTGL-SPQNESTAHDLALLVKAAYHYPLIREFSTHPESEV 339
Query: 194 EIKGKKYPNTNWAVGTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
E+ + N F KTG+ +G +V + +I V+L A +
Sbjct: 340 EVGPRTLQFRNTDHLVFNRGWDILLQKTGYINEAGHCLVLQTKFEGRRVIVVLLDAWGKY 399
Query: 251 TRNKVSASLLSM----GFY 265
+ + + + GF
Sbjct: 400 SHFGDAQRIRTWLEAKGFD 418
>gi|153813196|ref|ZP_01965864.1| hypothetical protein RUMOBE_03612 [Ruminococcus obeum ATCC 29174]
gi|149830727|gb|EDM85818.1| hypothetical protein RUMOBE_03612 [Ruminococcus obeum ATCC 29174]
Length = 417
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 18/261 (6%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+++ +T + D P + K+MT + + + T
Sbjct: 48 PQGPDITSTAAMIMEDSTQTTVYAKNMDQVLYPGATVKVMTTLLTLENAQLSDQVTMTAT 107
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+S ++ + + T++ L +++ SAND+A+ IAE + + FVQ MNN
Sbjct: 108 GVS--GVTDGGASISAQLDEVFTVEQCLYAIMLASANDVALQIAEQIGGSVDGFVQMMNN 165
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI---------- 190
+ LG + T F N G+ +TTA DMA+++ +
Sbjct: 166 RAVELGCTNTVFTNPTGLPDENQHTTAHDMALITKAAIDNESFRAIAETTSYTIPATNVS 225
Query: 191 ---KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ L NTN + + G + G+T ASG +V A + SLIAV+L
Sbjct: 226 GGERVLTNNFSMLNNTNASYYQY--CLGGREGYTEASGSTLVCGAEKNGVSLIAVVLQGA 283
Query: 248 DRNTRNKVSASLLSMGFYNKT 268
T + SLL+ GF N
Sbjct: 284 SGTT-AAEAVSLLNYGFDNFQ 303
>gi|56412918|ref|YP_149993.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|56127175|gb|AAV76681.1| penicillin-binding protein 7 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
Length = 315
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 105/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F L PF A ++D NT VI N+PD
Sbjct: 1 MLKFRASFLSFALMLAVPFAPQAVAKTAATTAASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV +L I+ + S + S ++ N L
Sbjct: 61 LVRPIASITKLMTAMVVLDARLPLDEILKVDISQTPE---MKGVYSRVRLNSEISRKNML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A F++ MN +K LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGL-SIHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|255348929|ref|ZP_05380936.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 70]
gi|255503469|ref|ZP_05381859.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 70s]
gi|255507147|ref|ZP_05382786.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
D(s)2923]
gi|289525596|emb|CBJ15074.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis Sweden2]
gi|296435156|gb|ADH17334.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis E/150]
gi|296438876|gb|ADH21029.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis E/11023]
Length = 437
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 75/375 (20%), Positives = 134/375 (35%), Gaps = 48/375 (12%)
Query: 1 MRQFLV----IIAMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPA 54
MR F + I +A FP + T ++ ++G ++ E DH PA
Sbjct: 1 MRTFFLLCRFFICLAPFFLSFPLYADPHTVLTKGIAAAVVHADSGAILKEKNLDHKIFPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTP-----------------ITISKNASEYPPSNSTFK 97
S+TK+ TA ++ + T + E K
Sbjct: 61 SMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLK 120
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
++ + L++ SAND A +A++ C++ F++ +N + LG THF + HG
Sbjct: 121 VKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHG 180
Query: 158 VVQHGHYTTARDMAILSWRIKTDF-----PQYMHYFQIKGLEIKGKKYPNTNW-----AV 207
+ HYTTARD++++ + Y + +TN +
Sbjct: 181 LHHPDHYTTARDLSLIMKEALKEPLFRQVIHTASYTMEATNLSPERVLSSTNKLLSSSST 240
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLLSMGFYN 266
+ G KTG T ++G NI+ +A + ++S+I V G + + +L F
Sbjct: 241 YFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLYQDAIALCEDLFNE 300
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI----- 321
+ R + + VP V + I Y+ E + +
Sbjct: 301 QLLRCFLIPPASHYP-------VPTRFGTVTAPVAQGIYYDFYPSEGDPLLTLSLEPNKI 353
Query: 322 --DFEKITLLKNKIT 334
K LL + I
Sbjct: 354 SFPIRKGDLLGHWIL 368
>gi|255311369|ref|ZP_05353939.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 6276]
gi|255317670|ref|ZP_05358916.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 6276s]
gi|296436084|gb|ADH18258.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/9768]
gi|296437012|gb|ADH19182.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/11222]
gi|296437945|gb|ADH20106.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/11074]
gi|297140445|gb|ADH97203.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis G/9301]
gi|297748681|gb|ADI51227.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis D-EC]
gi|297749561|gb|ADI52239.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis D-LC]
Length = 437
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 75/375 (20%), Positives = 134/375 (35%), Gaps = 48/375 (12%)
Query: 1 MRQFLV----IIAMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPA 54
MR F + I +A FP + T ++ ++G ++ E DH PA
Sbjct: 1 MRTFFLLYRFFICLAPFFLSFPLYADPHTVLTKGIAAAVVHADSGAILKEKNLDHKIFPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTP-----------------ITISKNASEYPPSNSTFK 97
S+TK+ TA ++ + T + E K
Sbjct: 61 SMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLK 120
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
++ + L++ SAND A +A++ C++ F++ +N + LG THF + HG
Sbjct: 121 VKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHG 180
Query: 158 VVQHGHYTTARDMAILSWRIKTDF-----PQYMHYFQIKGLEIKGKKYPNTNW-----AV 207
+ HYTTARD++++ + Y + +TN +
Sbjct: 181 LHHPDHYTTARDLSLIMKEALKEPLFRQVIHTASYTMEATNLSPERVLSSTNKLLSSSST 240
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLLSMGFYN 266
+ G KTG T ++G NI+ +A + ++S+I V G + + +L F
Sbjct: 241 YFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLYQDAIALCEDLFNE 300
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI----- 321
+ R + + VP V + I Y+ E + +
Sbjct: 301 QLLRCFLIPPASHYP-------VPTRFGTVTAPVAQGIYYDFYPSEGDPLLTLSLEPNKI 353
Query: 322 --DFEKITLLKNKIT 334
K LL + I
Sbjct: 354 SFPIRKGDLLGHWIL 368
>gi|322421006|ref|YP_004200229.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp.
M18]
gi|320127393|gb|ADW14953.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp.
M18]
Length = 300
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 69/294 (23%), Positives = 124/294 (42%), Gaps = 15/294 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ + + + + P Y + G V + + PASLTK+MT
Sbjct: 8 KKCACAAILIAGVPVSTADAARSRHPSPTYLV--KINGQVFRQQNANIRRAPASLTKMMT 65
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A VV L + +S++A+ S ++G + + + L ++ SAND
Sbjct: 66 ALVVMERCD-----LDEVVVVSRSAARETGSRIGLRRGDKVRVRDLLAAALIASANDACR 120
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--SWRIKT 179
A+A+ +K FV MN ++ L L THF NA G G Y+ A D+A L
Sbjct: 121 ALADHTSGNQKDFVVQMNARARALDLENTHFTNACGHDNKGLYSNAHDLARLAERAMQLP 180
Query: 180 DFPQYMHYFQIKGLEI---KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
F + + ++ + + N N +G + GA G+KTG T +G +VA A + +
Sbjct: 181 RFAELVSKRSMRISTVDGKRTYYLRNKNRLIGRYPGAIGVKTGTTPNAGQCLVALAEREE 240
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
+ ++ VI+ + + R + + +LL F + R + + + P
Sbjct: 241 RKVLVVIMHSQN---RWRAAPALLDAAFAASSPRHVPSNDTESTSARRPDEASP 291
>gi|166154766|ref|YP_001654884.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 434/Bu]
gi|166155641|ref|YP_001653896.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301336040|ref|ZP_07224284.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis L2tet1]
gi|165930754|emb|CAP04251.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis 434/Bu]
gi|165931629|emb|CAP07205.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 437
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 75/375 (20%), Positives = 134/375 (35%), Gaps = 48/375 (12%)
Query: 1 MRQFLV----IIAMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPA 54
MR F + I +A FP + T ++ ++G ++ E DH PA
Sbjct: 1 MRTFFLLCRFFICLAPFFLSFPLYADPHTVLTKGIAAAVVHADSGAILKEKNLDHKIFPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTP-----------------ITISKNASEYPPSNSTFK 97
S+TK+ TA ++ + T + E K
Sbjct: 61 SMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLK 120
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
++ + L++ SAND A +A++ C++ F++ +N + LG THF + HG
Sbjct: 121 VKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHG 180
Query: 158 VVQHGHYTTARDMAILSWRIKTDF-----PQYMHYFQIKGLEIKGKKYPNTNW-----AV 207
+ HYTTARD++++ + Y + +TN +
Sbjct: 181 LHHPDHYTTARDLSLIMKEALKEPLFRQVIHTASYTMEATNLSPERVLSSTNKLLSSSST 240
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLLSMGFYN 266
+ G KTG T ++G NI+ +A + ++S+I V G + + +L F
Sbjct: 241 YFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLYQDAIALCEDLFNE 300
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI----- 321
+ R + + VP V + I Y+ E + +
Sbjct: 301 QLLRCFLIPPASHYP-------VPTRFGTVTAPVAQGIYYDFYPSEGDPLLTLSLEPNKI 353
Query: 322 --DFEKITLLKNKIT 334
K LL + I
Sbjct: 354 SFPIRKGDLLGHWIL 368
>gi|259502317|ref|ZP_05745219.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259169697|gb|EEW54192.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 407
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 55/292 (18%), Positives = 113/292 (38%), Gaps = 32/292 (10%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAET-NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ ++I+ + ++ ++A ++D +TG V+ E + AS++KL+
Sbjct: 5 KILVLIMILPLMLAGIATDAMASDRINARAAVMIDASTGQVLYEQNANQKLPVASISKLL 64
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL----LIVKSA 116
T V+ LK++ T + +S + + S G ++ +VKSA
Sbjct: 65 TVAVIHDELKQRVITADTKVNVSSDVAAIASDPSYSAIGVQAGQAYTVRELLNAAMVKSA 124
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162
+ +A+A + ++F M+ ++ +GL +N G+
Sbjct: 125 DGATLALAGADGSNMEEFNLKMDQKAREIGLRNFTIVNPVGLTNGDLKGLKLEQYADNAE 184
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLG----- 212
+ TA D+A L+ + +P + + K K N N +
Sbjct: 185 NAMTANDVARLARYLIQTYPDLLQVTAQRSANFYIAKDKATKAENLNKMLPGDRYAVSGV 244
Query: 213 -ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR--NTRNKVSASLLS 261
DG+KTG + A+G + V++ + +I V+L A + R + L
Sbjct: 245 KIDGLKTGTSAAAGPSFVSTGLYRGHRVITVVLHANGAGGDARFIATQQLYD 296
>gi|302874416|ref|YP_003843049.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulovorans 743B]
gi|307690978|ref|ZP_07633424.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
cellulovorans 743B]
gi|302577273|gb|ADL51285.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
cellulovorans 743B]
Length = 454
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 59/348 (16%), Positives = 122/348 (35%), Gaps = 38/348 (10%)
Query: 1 MRQFLVIIA------MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ L+ + ++ F Y +D +TG VI PD PA
Sbjct: 1 MKKQLLSLLMASTMLLSFSKTTFAEPIPEPQIVGKYAITVDASTGEVIYAKDPDARVYPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN-------- 106
S+TK+MTA +V K + +T ++ A PS+
Sbjct: 61 SVTKVMTAILVEKLFK-----IDDMVTYTQTAKIQDPSSINMDIVDIPIGQQIPVSAALK 115
Query: 107 -ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--HGH 163
+ +A + K+FV MN+ +K LG+++T+F+ +G+ + H
Sbjct: 116 AMMLYSANDMTELVATNYPTKGSDSNKEFVALMNSEAKVLGMNSTNFVTTNGLDDNTNEH 175
Query: 164 YTTARDMAILSW-----RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-----VGTFLGA 213
TTA D++I++ Q + I + + N N
Sbjct: 176 LTTAYDLSIMAREAAKYPNIRAVWQLPNPTNIDFPGLTSVQVGNPNKFLQQGTDFYDPSC 235
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR---NTRNKVSASLLSMGFYNKTDR 270
G+K+GFT +G +++ + + ++ ++L T ++++ + +
Sbjct: 236 VGVKSGFTDKAGRCLLSVFERNGRQIVGIVLNCETSYLNQTIYTDMKNIINYSYQAQRSL 295
Query: 271 KKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
Y ++ + + T + + + A+D
Sbjct: 296 LTTTEPATGKVTSYSKDSLLTTIPVEYKEYITWGKTKTIDVPVYLAED 343
>gi|257791331|ref|YP_003181937.1| Serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella lenta DSM
2243]
gi|257475228|gb|ACV55548.1| Serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella lenta DSM
2243]
Length = 467
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 68/311 (21%), Positives = 122/311 (39%), Gaps = 21/311 (6%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ + Y ++ + G V E P AS+TK+MT V +++ L +
Sbjct: 57 AVAQCPSIDAEYAMVMGAD-GTVYFERNAQSPTQIASITKIMTGVVALDAVEDGLLSLDS 115
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK------ 132
P+T+S A+ S++ ++G M LD ALK L+V S ND AVAIAE++ +
Sbjct: 116 PVTVSAAAAAVGESSAGLQEGDVMNLDAALKALLVPSGNDAAVAIAETIGALMEPGTSDP 175
Query: 133 --KFVQHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILSWRIKTDFPQYMH 186
FV MN ++ LG + T + N HG+ ++TA D+A + T+
Sbjct: 176 EAVFVNAMNAKAQELGCTDTVYDNPHGLDFDAYAGDLHSTAADVAKVVQYAMTNDTFRAA 235
Query: 187 YF--QIKGLEIK------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ T+ + A G+KTG T +G + +A + +
Sbjct: 236 VGGGSTTIQVTRADGAKADIYLETTDGFFDIYEYAIGVKTGVTLLAGPSFAGAANKDGRE 295
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
L A+++ + R K + SL + ++ + N V ++
Sbjct: 296 LYAIVINSSSEAQRFKDAESLCEWVYQHEISYQLANSPETATMNGTEVPVVAEVAHSGWI 355
Query: 299 TQKEIINYNTQ 309
+
Sbjct: 356 DKTVKATLRDP 366
>gi|167634406|ref|ZP_02392727.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0442]
gi|254740331|ref|ZP_05198022.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Kruger B]
gi|167530294|gb|EDR93020.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0442]
Length = 428
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 71/301 (23%), Positives = 127/301 (42%), Gaps = 15/301 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + T +D TG ++ + H PAS+TK++TA ++ K
Sbjct: 37 VAPPPKEGPNVFSQFATTIDVKTGDILYDKNAHHRAFPASMTKVLTAILLMEHTK----- 91
Query: 76 LTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
T S+ A + SN F+ G T+ + AL +L+V SAND++ AIAE + + +
Sbjct: 92 PEDQFTFSQLALDQEKSNYQIEFQPGETINRNTALMILMVLSANDVSYAIAERIGGSVEN 151
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F MN +K LG + +HF+ +G+ YTT DMA+++ +P+ + K
Sbjct: 152 FANMMNERAKQLGATDSHFVTPNGLHDPNRYTTPYDMAMITR-GVQKYPEILQAMNTKRT 210
Query: 194 EIKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + + T+ + G KTGFT + +V + +I V++ A R
Sbjct: 211 TVTTSRQTVSIFNKSTYFENPFSIGGKTGFTNEARNTLVLLNEKDGNRIINVVM-ASQRP 269
Query: 251 TRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ + F + ++ K Y + S E+ + E+ N
Sbjct: 270 EIYEDLKQMADYSFGQFVKQTVLDKHSWHQKTTYLNKDIDSELEKSAELMLKKDEVKNVK 329
Query: 308 T 308
T
Sbjct: 330 T 330
>gi|331668834|ref|ZP_08369682.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli TA271]
gi|331064028|gb|EGI35939.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli TA271]
Length = 313
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 63/280 (22%), Positives = 106/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS------------IAETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L P ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|191165362|ref|ZP_03027204.1| penicillin-binding protein 7 [Escherichia coli B7A]
gi|190904525|gb|EDV64232.1| penicillin-binding protein 7 [Escherichia coli B7A]
Length = 313
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 109/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV + L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLNARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|227514221|ref|ZP_03944270.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
ATCC 14931]
gi|227087417|gb|EEI22729.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
ATCC 14931]
Length = 431
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/339 (16%), Positives = 119/339 (35%), Gaps = 29/339 (8%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
T +D TG V+ + AS++K++T V+ +K K T + ++K
Sbjct: 55 TVNAKAAIAIDATTGQVLYAKNANTKLAIASISKIITVGVIEQEIKAGKLSWNTKVKVTK 114
Query: 85 NA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
SN T G + T+ + ++KSA+ A+ ++ + + FV+ M
Sbjct: 115 EEAKLSENTEYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQA 174
Query: 141 TSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMH 186
K G++ N G+ + TA D+A ++ + ++P ++
Sbjct: 175 FVKKAGVTDAKLYNQVGLTNSQMGSYGLKGVAKNAENEMTATDVAKIAQYLIKNYPSLLN 234
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLG------ADGMKTGFTCASGFNIVASAIQGDQSLI 240
++ I G N + DG+KTG + +G V++ +I
Sbjct: 235 ITKLTSTTIDGTTVTTINKMLPGQSDAPSQVKIDGLKTGTSDKAGACFVSTGTYQGHRII 294
Query: 241 AVILGAL-DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
V+L A + R +A+L + T ++ ++ ++
Sbjct: 295 TVVLHATGGGDERFTQTANLYHLIANEYTAYTVQPSVVATVPNGKVTTTTLTTQGKITLW 354
Query: 300 QKEII----NYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+K+ + K A +K ++
Sbjct: 355 KKDGTLLSPSLAINSKAADKNGKLTAPVKKGQVVGELTY 393
>gi|240170567|ref|ZP_04749226.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
kansasii ATCC 12478]
Length = 294
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 55/250 (22%), Positives = 96/250 (38%), Gaps = 14/250 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + D ++G V+AE + PAS K++ A V L + +
Sbjct: 41 PDGPAQTWIVADLDSGQVLAERDQNVAHPPASTIKVLLALVALDE-----LDLNSTVVAD 95
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ + K G T T L L++ S ND A +A+ L + + MN +
Sbjct: 96 VADTQVECNCVGIKPGRTYTARQLLDALLLVSGNDAANTLAQMLGGQDVAVAK-MNAKAA 154
Query: 144 NLGLSATHFMNAHGVVQHGHY--TTARDMAILSWRIKTDFPQYM---HYFQIKGLEIKGK 198
LG +TH G+ G +TA D+A++ + + + +
Sbjct: 155 ALGAGSTHAATPSGLDGPGGSGASTAHDLAVIFRAAMANPVFARITAEPSAMFPGDNGDQ 214
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKV 255
N + + + GA G KTGFT A+ V +A + + L+ ++ T
Sbjct: 215 PIVNQDELLQRYPGAIGGKTGFTNAARKTFVGAAARNGRRLVIAMMYGMVKEGGPTYWDQ 274
Query: 256 SASLLSMGFY 265
+ASL GF
Sbjct: 275 AASLFDWGFA 284
>gi|317490469|ref|ZP_07948950.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA]
gi|325831447|ref|ZP_08164701.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1]
gi|316910407|gb|EFV32035.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA]
gi|325486701|gb|EGC89149.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1]
Length = 467
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 68/311 (21%), Positives = 122/311 (39%), Gaps = 21/311 (6%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ + Y ++ + G V E P AS+TK+MT V +++ L +
Sbjct: 57 AVAQCPSIDAEYAMVMGAD-GTVYFERNAQSPTQIASITKIMTGVVALDAVEDGLLSLDS 115
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK------ 132
P+T+S A+ S++ ++G M LD ALK L+V S ND AVAIAE++ +
Sbjct: 116 PVTVSAAAAAVGESSAGLQEGDVMNLDAALKALLVPSGNDAAVAIAETIGALMEPGTSDP 175
Query: 133 --KFVQHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILSWRIKTDFPQYMH 186
FV MN ++ LG + T + N HG+ ++TA D+A + T+
Sbjct: 176 EAVFVNAMNAKAQELGCTDTVYDNPHGLDFDAYAGDLHSTAADVAKVVQYAMTNDTFRAA 235
Query: 187 YF--QIKGLEIK------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ T+ + A G+KTG T +G + +A + +
Sbjct: 236 VGGGSTTIQVTRADGAKADIYLETTDGFFDIYEYAIGVKTGVTLLAGPSFAGAANKDGRE 295
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
L A+++ + R K + SL + ++ + N V ++
Sbjct: 296 LYAIVINSSSEAQRFKDAESLCEWVYQHEISYQLANSPETATMNGTEVPVVAEVAHSGWI 355
Query: 299 TQKEIINYNTQ 309
+
Sbjct: 356 DKTVKATLRDP 366
>gi|300917026|ref|ZP_07133721.1| beta-lactamase [Escherichia coli MS 115-1]
gi|300415701|gb|EFJ99011.1| beta-lactamase [Escherichia coli MS 115-1]
Length = 313
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 105/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L P A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + E + S + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKEVYSRVRLNSEISRK---DML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|319939487|ref|ZP_08013847.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus anginosus
1_2_62CV]
gi|319811473|gb|EFW07768.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus anginosus
1_2_62CV]
Length = 458
Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats.
Identities = 75/394 (19%), Positives = 148/394 (37%), Gaps = 64/394 (16%)
Query: 1 MRQFLVIIAMAMLSN----------------IFPFLSIAETNKLPYYTLLDTNTGHVIAE 44
M++ L I+ +L ++P + N+ ++D NTG+++ +
Sbjct: 1 MKKLLTIVCFFVLCVGTITIHADELVDMAQKMYPDEKVNPINRPKSSLIVDANTGNILWQ 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-----SEYPPSNSTFKKG 99
+ D +PAS++KLMT Y+VF +++ K T I + +N
Sbjct: 61 DNIDEVRDPASMSKLMTLYLVFEAIQQGKLSENTVIKATPRDEAIAKIYEISNNKIVAGV 120
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG-- 157
+ + S + F+ MN +K LG++ T + NA G
Sbjct: 121 DYTVSELITMTAVPSSNATTVMLANYLSNNDPDTFLDMMNAKAKALGMTNTKWFNASGAA 180
Query: 158 -------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ TTARD+AIL + ++P ++Y + +K
Sbjct: 181 AVSFKGLYTPQRYDNNAANQTTARDLAILGYHFVKNYPNILNYTNKPVVTVKKGTPYEET 240
Query: 205 WAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT---- 251
+ + G +G+KTG + FN +A+ +G+Q LI+VI+G D
Sbjct: 241 FETYNYSLPGAKYGIEGVEGLKTGSSPRGAFNYIATIKRGEQRLISVIMGVGDWADQNGE 300
Query: 252 --RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
R+ +L+ + + +K N Q ++ + +S++ T K+
Sbjct: 301 YYRHPFGNALIEKAYADYEYKKVFNAGE-----QEINGKTYKLSKDFYATVKKGTAAKAV 355
Query: 310 MKEA--------KDKESHFIDFEKITLLKNKITK 335
++ + S + + +T +K+ K
Sbjct: 356 VENDVLKNDNGLEQLSSLISNGDNVTEVKDTAIK 389
>gi|313621847|gb|EFR92532.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria innocua FSL
J1-023]
Length = 272
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 61/255 (23%), Positives = 113/255 (44%), Gaps = 6/255 (2%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + + G + E D ASLTKLMTA++V + +
Sbjct: 18 SACSAKQPTVSLSSNAAAVYSVENGIAVYEKNADKVMPIASLTKLMTAFLVLEAVDNNEL 77
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ + + S + T ++ + ++V SAND A + + F
Sbjct: 78 SWDEELDLVRLDDPSAVSLYAITQKRTWSVRDLYNAMLVMSANDAAETLG--NRLDDANF 135
Query: 135 VQHMNNTSKNLG-LSATHFMNAHGVVQHGHY--TTARDMAILSWRIKTDFPQYMHYFQI- 190
Q MNN +K LG T F++A G+ G +T +D+ +LS ++ + P+ +
Sbjct: 136 PQKMNNEAKKLGLSKKTKFVSASGLDVDGKMAVSTTKDLFLLSSKLISTHPEVLETTSKS 195
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ +G +TN ++G+ G DG+KTGFT +G+ + +A + + +I+++L A
Sbjct: 196 SIITEEGATLESTNDSIGSIQGLDGLKTGFTDEAGYCFIGTAKRDGKRVISIVLDAGTAE 255
Query: 251 TRNKVSASLLSMGFY 265
R K + L+ +GF
Sbjct: 256 KRFKDTEKLMEIGFK 270
>gi|320086606|emb|CBY96377.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 315
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 105/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F L PF A ++D NT VI N+PD
Sbjct: 1 MLKFRASFLSLALMLAVPFAPQAVAKTAATTAASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV +L I+ + S + S ++ N L
Sbjct: 61 LVRPIASITKLMTAMVVLDARLPLDEILKVDISQTPE---MKGVYSRVRLNSEISRKNML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A F++ MN +K LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGL-SIHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTMINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|91784256|ref|YP_559462.1| murein-DD-endopeptidase [Burkholderia xenovorans LB400]
gi|91688210|gb|ABE31410.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Burkholderia xenovorans LB400]
Length = 389
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 8/247 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D N+G + + AS+TKLMTA VV +
Sbjct: 127 TPDALMLRSSVAYVIDQNSGEPLFDKNSRAVVPIASITKLMTAMVVLDSKEPMT---DQI 183
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 184 EVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFLAAMN 243
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM---HYFQIKGLEIK 196
+K LG++ THF N G+ + ++ARD+ + + +
Sbjct: 244 AKAKQLGMTDTHFENPTGLTS-QNVSSARDLVKMVNAAYQYPLIRRFSTDHSYEVYTGKR 302
Query: 197 GKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN V G KTGF +G +V A + +I V+L + + +R
Sbjct: 303 SLAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRPMIMVLLDSSGKYSRFAD 362
Query: 256 SASLLSM 262
+ L +
Sbjct: 363 ATRLRTW 369
>gi|257417256|ref|ZP_05594250.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis AR01/DG]
gi|257159084|gb|EEU89044.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis ARO1/DG]
Length = 475
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 71/343 (20%), Positives = 135/343 (39%), Gaps = 43/343 (12%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ +
Sbjct: 42 KAAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVD 101
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSK 143
SN+ G + LK++ V S+N + +A + + FV MN +
Sbjct: 102 ISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAA 161
Query: 144 NLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
LG++ T + N G + +TARD+A L++ ++P+ +
Sbjct: 162 ELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPKILEIT 221
Query: 189 -----QIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N++ + G DG+KTG + GFN +A+ QGD L
Sbjct: 222 NKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRL 281
Query: 240 IAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SN 287
I VILG R+ +LL + +K ++ + + +
Sbjct: 282 IEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYG 341
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
VP S+ + +T + + +K
Sbjct: 342 VVPKGSQPTFKLVAGQVQVDTPL--TLLNSTVQAPKVAYQEVK 382
>gi|167586734|ref|ZP_02379122.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ubonensis Bu]
Length = 366
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 11/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D N+G + + AS+TKLMTA VV LT
Sbjct: 104 TPDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASITKLMTAMVVLDSK----LPLTDQ 159
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ ++ + S GS ++ ++ L + ++ S N A +++ FV M
Sbjct: 160 IEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAASMSRYYPGGRPAFVAAM 219
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGL 193
N +K LG++ THF N+ G+ + ++ARD+ + + + F Y G
Sbjct: 220 NAKAKALGMADTHFENSTGL-SSQNVSSARDLVKMVNAAYQYPLIRKFSTDRSYEVYTGK 278
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
N KTGF +G +V A D+ ++ V+L + + +R
Sbjct: 279 RNLAYNSTNALIRGNNSWDIGLQKTGFINEAGECLVMQATIHDRPMVIVLLDSFGKYSRF 338
Query: 254 KVSASLLSM 262
+A L +
Sbjct: 339 ADAARLRNW 347
>gi|29830922|ref|NP_825556.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
MA-4680]
gi|29608035|dbj|BAC72091.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
avermitilis MA-4680]
Length = 276
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 67/278 (24%), Positives = 116/278 (41%), Gaps = 22/278 (7%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+++ L+ T +++ TG + D + S TK+MTA VV
Sbjct: 1 MLSTGALTAAPAQAVTKPTITAKGGYVMNNGTGKSLYTKAADTKLSTGSTTKIMTAKVVL 60
Query: 67 SFLKEKKAMLTTPITISKNASEY-----PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
S L +T+ K S+Y S++ G +T+ L L++ S D A
Sbjct: 61 SQS---NLNLDAKVTVQKAYSDYIVDNNYASSAHLIVGDKVTVRQLLYGLMLPSGCDAAY 117
Query: 122 AIAESLCK------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
A+A+ K F+ MN+T+K+LG++ THF + G+ +Y+T RD+ L+
Sbjct: 118 ALADKFGSGSTRAARVKSFLSKMNSTAKSLGMTNTHFDSFDGIGHGSNYSTPRDLTKLAS 177
Query: 176 RIKT--------DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
K + + NTN +GT+ G G+KTG + F
Sbjct: 178 SAMKSSTFRTVVKTKSTKQKATTKSGGYRYYNWDNTNPLLGTYTGTIGVKTGSGPEAKFC 237
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+V +A + +++I +L + R + LL+ GF
Sbjct: 238 LVFAATRNGKTVIGTVLASTSVANRTADAKKLLNYGFA 275
>gi|255974260|ref|ZP_05424846.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T2]
gi|255967132|gb|EET97754.1| D-Alanyl-D-Alanine carboxypeptidase [Enterococcus faecalis T2]
Length = 441
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 43/343 (12%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D ++G ++ PD WNPAS+ K+MT Y+ F +++ K + T +T ++ +
Sbjct: 8 KAAIVVDADSGEILWSQQPDLAWNPASIAKVMTMYLAFEAMEQGKFTMDTTVTATQKDVD 67
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSK 143
SN+ G + LK++ V S+N + +A + + FV MN +
Sbjct: 68 ISKIYAISNNKITLGVAYPVRELLKMIAVPSSNVATLMLANLISGNQPTDFVHLMNQKAA 127
Query: 144 NLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
LG++ T + N G + +TARD+A L++ ++P+ +
Sbjct: 128 ELGMTNTTYYNCSGAQASAFNGLYQMQGIDPNGDNVSTARDLASLTYHFLKNYPEILEIT 187
Query: 189 -----QIKGLEIKGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + + N++ + G DG+KTG + GFN +A+ QGD L
Sbjct: 188 NKPVVKTMVGTPYEETFEAYNYSLPGAKYGYQGVDGLKTGSSPTGGFNYIATVKQGDFRL 247
Query: 240 IAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL------SN 287
I VILG R+ +LL + +K ++ + + +
Sbjct: 248 IEVILGVGNWQNQDGEYERHVAGNALLDYAYTTYERKKLLDKGPQTIDHKKVTLANDLYG 307
Query: 288 EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+P S+ + +T + + +K
Sbjct: 308 VIPKGSQPTFKLVAGQVQVDTPL--TLLNSTVQAPKVAYQEVK 348
>gi|206580756|ref|YP_002237447.1| penicillin-binding protein 7 [Klebsiella pneumoniae 342]
gi|290508576|ref|ZP_06547947.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. 1_1_55]
gi|206569814|gb|ACI11590.1| penicillin-binding protein 7 [Klebsiella pneumoniae 342]
gi|289777970|gb|EFD85967.1| D-alanyl-D-alanine endopeptidase [Klebsiella sp. 1_1_55]
Length = 316
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 55/258 (21%), Positives = 99/258 (38%), Gaps = 10/258 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + ++D T +I + PD AS+TK+MTA VV
Sbjct: 24 ALAKTSAAVAASQPDIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAHL 83
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
MLT I+ + E S + S ++ L L ++ S N A ++A
Sbjct: 84 PMDEMLTVDIS---HTPEMKGIYSRVRLNSQISRRTMLLLALMSSENRAAASLAHHYPGG 140
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYM 185
F++ MN ++ LG++ T ++ G+ + +TARD+ L + +
Sbjct: 141 YDAFIRAMNAKAQALGMTHTRYVEPTGL-SVHNVSTARDLTKLLIASEQYPLIGQLSTTK 199
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ NTN V KTGFT A+G ++ + + + V++
Sbjct: 200 EETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQRPVALVVM 259
Query: 245 GALDRNTRNKVSASLLSM 262
A + T ++ L +
Sbjct: 260 DAFGKYTHFADASRLRTW 277
>gi|333002850|gb|EGK22406.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-272]
gi|333016854|gb|EGK36178.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-227]
Length = 311
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT VI N+PD
Sbjct: 1 MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 61 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|16802003|ref|NP_472271.1| hypothetical protein lin2944 [Listeria innocua Clip11262]
gi|16415485|emb|CAC98169.1| lin2944 [Listeria innocua Clip11262]
Length = 272
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 66/244 (27%), Positives = 114/244 (46%), Gaps = 6/244 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ T G E D ASLTKLMTA++V + KK + + +
Sbjct: 29 LSANAAAVYSTENGKAFYEKNADKVMPIASLTKLMTAFLVLEAVDNKKLSWDEELDLIRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++V SAND A + + F Q MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLVMSANDAAETLG--NRLDDANFPQKMNNEAKKL 146
Query: 146 GLSA-THFMNAHGVVQHGHY--TTARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKKYP 201
GLS T F++A G+ G +T +D+ +LS ++ + P+ + + +G
Sbjct: 147 GLSNKTKFVSASGLDVDGKMAVSTTKDLFLLSSKLISTHPEVLETTSKSSIITEEGATLE 206
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+TN ++G+ G DG+KTGFT +G+ + +A + + +I+++L A R K + L+
Sbjct: 207 STNDSIGSIQGLDGLKTGFTDEAGYCFIGTAKRDGKRVISIVLDADTAEKRFKDTEKLMG 266
Query: 262 MGFY 265
+GF
Sbjct: 267 IGFK 270
>gi|299771873|ref|YP_003733899.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter sp. DR1]
gi|298701961|gb|ADI92526.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter sp. DR1]
Length = 335
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 8/251 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ + ++D TG V+ + AS+TKLMTA V +
Sbjct: 80 TSGYNAQPSVSARAALVMDAQTGEVLFSKNTNASVPIASITKLMTAVVTADARLNMSEEI 139
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
I + S+ST + G M L ++KS N A A+A + FV
Sbjct: 140 -MLEQIDFAGANGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVA 198
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN ++ LG++ATH+ + G+ + ++ARD+ IL+ + + + +
Sbjct: 199 AMNAKARALGMNATHYYESTGL-DPRNVSSARDLGILAS-TASQYGLIRQFSTTPTYDFN 256
Query: 197 GK----KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
K NTN V + KTG+ +G +V + + V+LG
Sbjct: 257 LGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQA 316
Query: 252 RNKVSASLLSM 262
RN + +LL
Sbjct: 317 RNNDATNLLGW 327
>gi|330685765|gb|EGG97400.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus
epidermidis VCU121]
Length = 429
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 76/360 (21%), Positives = 135/360 (37%), Gaps = 51/360 (14%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAE--------------------TNKLPYYTLLDTNTG 39
M++ F++II M + NI + AE + + + G
Sbjct: 1 MKRIFILIITMFFVLNIITPFANAENGDVTPVQVAIDNGYSKVTEAYQPESAINVSQD-G 59
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNST 95
++ E D W PAS+TKLMT Y+ +K+KK L + ++ + SN+
Sbjct: 60 QILYEYNKDKVWYPASMTKLMTMYLTLEAVKDKKLSLNDEVKMTDREYQMSTLPELSNTK 119
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
G T+ + L++ + S+N A+ + E + F MN +K LG+ TH++N
Sbjct: 120 LYPGQKWTISDLLQITVSNSSNAAALILGEQVSGNVNDFTDLMNKKAKELGMKDTHYVNP 179
Query: 156 HGVVQ--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
G T+ARD AIL + + P+ + + + G Y
Sbjct: 180 SGAENTRLKSFAPSKYKKTENTTTSARDYAILDQHVINETPKILDFTKQLAPTTHGVTYY 239
Query: 202 NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNT 251
N + + G DG+KTG + + +N + + + VILGA D
Sbjct: 240 TFNHSLDGADMSLPGTDGLKTGSSDTADYNHTITTKRNGFRINQVILGAGDYKHIGGEKQ 299
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
RN + +L+ F K ++ K ++ + + + K
Sbjct: 300 RNMMGNALMERSFNQYKYEKILSKG-KHQINGKTYYVEQDLYDVLPKDFTKKDFQLVIDK 358
>gi|296158343|ref|ZP_06841174.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. Ch1-1]
gi|295891287|gb|EFG71074.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. Ch1-1]
Length = 415
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 8/247 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D N+G + + AS+TKLMTA VV +
Sbjct: 153 TPDALMLRSSVAYVIDQNSGEPLFDKNSRAVVPIASITKLMTAMVVLDSKEPMT---DQI 209
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 210 EVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFLAAMN 269
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM---HYFQIKGLEIK 196
++ LG++ THF N G+ + ++ARD+ + + +
Sbjct: 270 AKARQLGMTDTHFENPTGLTS-QNVSSARDLVKMVNAAYQYPLIRRFSTDHSYEVYTGKR 328
Query: 197 GKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN V G KTGF +G +V A + +I V+L + + +R
Sbjct: 329 SLAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRPMIMVLLDSSGKYSRFAD 388
Query: 256 SASLLSM 262
+ L +
Sbjct: 389 ATRLRTW 395
>gi|296103782|ref|YP_003613928.1| D-alanyl-D-alanine endopeptidase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295058241|gb|ADF62979.1| D-alanyl-D-alanine endopeptidase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 307
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/256 (22%), Positives = 99/256 (38%), Gaps = 12/256 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + ++D NT VI ++PD AS+TKLMTA VV
Sbjct: 27 TPAVTTAAAQPQIASGSAMIVDLNTNKVIYASHPDLVRPIASITKLMTAMVVLDA----H 82
Query: 74 AMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L + + + E S + S ++ N L L ++ S N A ++A
Sbjct: 83 LPLDEKLKVDISHTPEMKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYD 142
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHY 187
F++ MN +K LG++ T F+ G+ + +TARD+ L + +
Sbjct: 143 AFIRAMNAKAKALGMNNTRFVEPTGL-SIHNVSTARDLTKLLIASKQYPLIGQLSTTREE 201
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ NTN V KTGFT A+G +V + + + V++ A
Sbjct: 202 MATFANPAYTLPFRNTNHLVYRENWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDA 261
Query: 247 LDRNTRNKVSASLLSM 262
+ T ++ L +
Sbjct: 262 FGKYTHFADASRLRTW 277
>gi|302524153|ref|ZP_07276495.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. AA4]
gi|302433048|gb|EFL04864.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. AA4]
Length = 409
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 65/246 (26%), Positives = 99/246 (40%), Gaps = 14/246 (5%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ L D +TG V+A P PASL K + A VV + I +K
Sbjct: 95 TSASWVLQDLDTGAVVAAKDPHARERPASLIKTLLALVVVTE-----LKPEQVIVPTKED 149
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+E + G T+D L L++ S ND+A A A +L + V+ MN + +G
Sbjct: 150 AEQECTCVGITAGGHYTVDQLLHGLLMHSGNDVAHAFATALGGVDAAVVK-MNALAARIG 208
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI------KGKKY 200
+ T G+ G T+A D++++ P++ K I
Sbjct: 209 ATDTRAATPSGLDGPGMSTSAYDLSLVFHY-AMKQPEFAKVVATKNFTIPAVDGKPPIPV 267
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV-SASL 259
N N +G + G G KTGFT + V A + L V++ A R T+ +A L
Sbjct: 268 FNDNKLLGVYPGFLGGKTGFTDDARHTYVGGAERDGHRLAIVMMRAEQRPTKVVDQAAKL 327
Query: 260 LSMGFY 265
L GF
Sbjct: 328 LDYGFA 333
>gi|145595002|ref|YP_001159299.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora tropica
CNB-440]
gi|145304339|gb|ABP54921.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora tropica
CNB-440]
Length = 428
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 59/254 (23%), Positives = 104/254 (40%), Gaps = 19/254 (7%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM-TAYVVFSFLKEKKAMLTTPITIS 83
+ + D +TG V+ P PAS+ KL+ TA ++ +T++
Sbjct: 94 EVTATSWLVADLDTGQVLGSCGPHEYATPASVQKLLLTAALLPD------LDPQQVVTVT 147
Query: 84 KNASEYPPSNSTFK--KGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMN 139
K + P +S G ++ L+++S ND A +A + V+ MN
Sbjct: 148 KEDLDIEPDSSAVGLLVGGQYPVETLWLGLLMQSGNDAANVLARLGGGAEGRAGGVRAMN 207
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-- 197
+++LG TH + G+ G +T+A D+A+++ + +
Sbjct: 208 EFAEHLGARQTHAVTPSGLDGPGQFTSAYDLALIARACFAEPDFQRYALTETHQIPDQEA 267
Query: 198 -----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ N N + + GA G KTGFT + V +A + + L+ +LGA R R
Sbjct: 268 LGRKGFQIQNGNSLIDRYPGALGGKTGFTTLARHTYVGAAERDGRRLVVTLLGAESRPLR 327
Query: 253 -NKVSASLLSMGFY 265
+ A+LL GF
Sbjct: 328 GWEQGAALLDWGFA 341
>gi|114048686|ref|YP_739236.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. MR-7]
gi|113890128|gb|ABI44179.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Shewanella sp. MR-7]
Length = 318
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 54/249 (21%), Positives = 97/249 (38%), Gaps = 10/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D T ++ + PD AS+TKLMTA V K +
Sbjct: 43 PAKQQEVAANSALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTLDA----KLPMDEK 98
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ I+ + E S + GS ++ + L L ++ S N A ++A K F++ M
Sbjct: 99 LAININDTKEMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKAM 158
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K+LG+ T ++ G+ + + + +L + + K +
Sbjct: 159 NAKAKSLGMKNTRYVEPTGLSEKNVSSARDLVVLLKASEGYPMLGQLSSTEKKTVTFGKP 218
Query: 199 KY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
KY NTN V KTGFT +G +V + + V+L A + T
Sbjct: 219 KYSLDFRNTNRLVYKDNWNIHLTKTGFTNEAGHCLVMRTEMAKRQVAFVVLDAYGKYTHM 278
Query: 254 KVSASLLSM 262
+ L +
Sbjct: 279 ADANRLRNW 287
>gi|170767319|ref|ZP_02901772.1| penicillin-binding protein 7 [Escherichia albertii TW07627]
gi|170123653|gb|EDS92584.1| penicillin-binding protein 7 [Escherichia albertii TW07627]
Length = 312
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIATKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|108805102|ref|YP_645039.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrobacter xylanophilus
DSM 9941]
gi|108766345|gb|ABG05227.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rubrobacter xylanophilus
DSM 9941]
Length = 384
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 74/302 (24%), Positives = 125/302 (41%), Gaps = 20/302 (6%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPPSNS 94
+G ++A + AS TK+M A V L + +S + P SN
Sbjct: 47 SGELLASHDAGERLPMASTTKIMLAIVALRE-----GGLDREVAVSPRAAAYAAPPYSNV 101
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ G ++L L ++ S +D A A+AE+ + ++ V+ MN ++ LGL THF
Sbjct: 102 GLRAGDVLSLRELLMASLISSGDDAAYALAEALGGGSVERLVEKMNREARRLGLEDTHFQ 161
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTNWAVGT 209
N G+ H ++ARD+ +S +P + + I + NTN + T
Sbjct: 162 NPVGLDGRRHRSSARDLVRMSR-EAMQYPLFREIVATRYAVISTPDREIPLTNTNELLFT 220
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD 269
+ A G+KTG T A+G +VASA GD+S +AV+L A R R S LL GF
Sbjct: 221 YPPATGIKTGTTPAAGPCLVASAASGDESYVAVVLDA--RADRFAASLRLLEYGFSAYDR 278
Query: 270 RKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
R+ + + + + E + +++ + E+
Sbjct: 279 RELVRRGERYASVEVPYRRGERVPLVAGESLSALLGPGDRVRREVEVPDEPPGSARRGER 338
Query: 326 IT 327
+
Sbjct: 339 LG 340
>gi|119897114|ref|YP_932327.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72]
gi|119669527|emb|CAL93440.1| D-alanyl-D-alanine carboxypeptidase [Azoarcus sp. BH72]
Length = 280
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 8/243 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + + + TG V+ E AS+TKLMTA VV L + IS
Sbjct: 24 PQLRSAAFYVANQATGEVLLEKNSSTVLPIASITKLMTAMVVLDAG----LGLNDELAIS 79
Query: 84 KNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ + S G+ +T + L+L ++ S N A A+A E+ FV+ MN +
Sbjct: 80 DADIDTLKGTGSRLVLGTRLTREEMLRLALMSSENRAASALARHYPGGERAFVEAMNVKA 139
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP- 201
+ LG T + ++ G+ + ++S + + ++I G+
Sbjct: 140 RLLGAWDTRYYDSTGLNPANVSSPRDLAKVVSAAATYPLIREFSTTSERFVDIGGRTLRF 199
Query: 202 -NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN V + KTG+ +G +V A Q ++ V++ + R TR + +
Sbjct: 200 ANTNSLVRSPDWEIAVSKTGYISEAGRCLVMQAWMHHQPVVIVLMDSNGRYTRTADAQRV 259
Query: 260 LSM 262
Sbjct: 260 RKW 262
>gi|319947350|ref|ZP_08021583.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
ATCC 700641]
gi|319746592|gb|EFV98852.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
ATCC 700641]
Length = 444
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 76/387 (19%), Positives = 150/387 (38%), Gaps = 59/387 (15%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIA 43
M++ L+++ + +LS + P +A+ + ++D NTG V+
Sbjct: 1 MKKKLLVLGIVVLSLLRPLSIVADELVDMAQKMYPNDHVQAYNRPRSSLVIDANTGDVLW 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI-----TISKNASEYPPSNSTFKK 98
++ D +PAS++KLMT Y++F +KE K T + S + +N+
Sbjct: 61 KDNIDEVRDPASMSKLMTLYLLFESMKEGKITKDTVVTATAADQSMSKIYEISNNNIVAG 120
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
+ + S + F+Q MN SK LG++ T + N G
Sbjct: 121 VDYTVSELITMTAVPSSNVATIMLANLLSNHDADAFIQRMNEKSKELGMTNTIWNNPSGA 180
Query: 159 V---------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ TTARD+AIL + ++P+ + Y + +K
Sbjct: 181 AISTFQGLYTSYNYPNDAANQTTARDLAILVYHFVKEYPEILSYTNQAKVTVKQGTPYEE 240
Query: 204 NWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251
+ + G DG+KTG + FN +A+A +G+Q +I+V++G D +
Sbjct: 241 TFDTYNYSLPGARYALEGVDGLKTGSSPRGAFNYIATAKRGEQRIISVVMGVGDWSDQDG 300
Query: 252 ---RNKVSASLLSMGFYNKTDRKKINYIIKDF------YQQNLSNEVPNISEEVCTTQKE 302
R+ +L+ F + +K ++ ++ Q V E K+
Sbjct: 301 EYYRHPFGNALIEKAFADYRYKKLLDKGVQTIDGKTYTLDQPFYATVKKGEENPKLVVKD 360
Query: 303 I-INYNTQMKEAKDKESHFIDFEKITL 328
+ ++ + +K S + ++ +
Sbjct: 361 GQVEADSGLMTLSEKISDGLPVKEGAV 387
>gi|323213518|gb|EFZ98309.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
Length = 278
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 104/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLS------------IAETNKLPYYTLLDTNTGHVIAENYPD 48
M +F L PF ++D NT VI N+PD
Sbjct: 1 MLKFRASFLSLALMLAVPFAPQAVAKTAATTAASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV +L I+ + S + S ++ N L
Sbjct: 61 LVRPIASITKLMTAMVVLDARLPLDEILKVDISQTPE---MKGVYSRVRLNSEISRKNML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A F++ MN +K LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGL-SIHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|21225333|ref|NP_631112.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)]
gi|9716157|emb|CAC01548.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
coelicolor A3(2)]
Length = 413
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 49/279 (17%), Positives = 93/279 (33%), Gaps = 21/279 (7%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK--- 72
P + + D TG V+A N PAS K + A V L
Sbjct: 83 PHPAAPRVPEVSALSWVVADAGTGDVLAANDAHRELPPASTLKTLFALTVLPALPGGIRH 142
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ I S+ + L + ++ + AV + SL
Sbjct: 143 EVGPEDLSGIGP------GSSLVGVVEGQTYRVSDLWNGVFLNSGNDAVHVLASLTGGWS 196
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-- 190
M ++ LG TH + G G ++A D+A+ + ++
Sbjct: 197 ATAARMQAEARALGARDTHVRSPDGYDAPGQVSSAYDLAVFGREGLRRPDFARYCAKVDA 256
Query: 191 --KGLEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
G + NTN V + G G+K G+T +G ++A+A + ++L+
Sbjct: 257 MFPGRDGSSYGIMNTNRLLTGADGVQPYPGLIGVKNGYTSNAGNTLIAAARRDGRTLVVT 316
Query: 243 ILGAL--DRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
++ + + + +LL GF + + + +
Sbjct: 317 VMNPQEGGGHAVYEEARALLDWGFEAAGEVDPVGSLDPE 355
>gi|62180754|ref|YP_217171.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|62128387|gb|AAX66090.1| D-alanyl-D-alanine endopeptidase; penicillin-binding protein 7 and
penicillin-binding protein 8 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322715229|gb|EFZ06800.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 315
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 105/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F L PF A ++D NT VI N+PD
Sbjct: 1 MLKFRASFLSLALMLAVPFAPQAVAKTAATTAASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV +L I+ + S + S ++ N L
Sbjct: 61 LVRPIASITKLMTAMVVLDARLPLDEILKVDISQTPE---MKGVYSRVRLNSEISRKNML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A F++ MN +K LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGL-SIHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN + KTGFT
Sbjct: 177 DLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLLYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|271968855|ref|YP_003343051.1| D-alanyl-D-alanine carboxypeptidase-like protein [Streptosporangium
roseum DSM 43021]
gi|270512030|gb|ACZ90308.1| D-alanyl-D-alanine carboxypeptidase-like protein [Streptosporangium
roseum DSM 43021]
Length = 313
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 67/238 (28%), Positives = 107/238 (44%), Gaps = 7/238 (2%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L D TG V ASLTK+MTAYVV + + ++A+
Sbjct: 63 YLFDPGTGTVHLSKQATRRMPVASLTKVMTAYVVLREAGLNDIVTVNAGDV-RHAATNDA 121
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + + G +T+ L ++ S D A+A E +FV MN +++LGL+ T
Sbjct: 122 TAAALRAGERLTVRELLYGAMLPSGADATHALARVYGPGESRFVAKMNAAARSLGLTGTR 181
Query: 152 FMNAHGVVQHGH-YTTARDMAILSWRIKTDFPQY-----MHYFQIKGLEIKGKKYPNTNW 205
+ N+ G+ + Y+TA+D A L+ + D Y K + + NTN
Sbjct: 182 YGNSDGLPKPSPGYSTAQDQARLADVVLRDPVLRTIASTRRYVVRKSKVHRAHVWTNTNK 241
Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
+G GA G+KTG+T A+G+ + +A + LI VILG + R + + LL
Sbjct: 242 LLGEAPGALGVKTGYTRAAGYCLSFAADRDGHRLIGVILGDTRADRRFQTAGRLLDWA 299
>gi|161613143|ref|YP_001587108.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161362507|gb|ABX66275.1| hypothetical protein SPAB_00851 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 313
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 105/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F L PF A ++D NT VI N+PD
Sbjct: 1 MLKFRASFLSLALMLAVPFAPQAVAKTAATTAASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV +L I+ + S + S ++ N L
Sbjct: 61 LVRPIASITKLMTAMVVLDARLPLDEILKVDISQTPE---MKGVYSRVRLNSEISRKNML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A F++ MN +K LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGL-SIHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|16765498|ref|NP_461113.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|168242251|ref|ZP_02667183.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168466155|ref|ZP_02700025.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|194445434|ref|YP_002041439.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|197251040|ref|YP_002147139.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|207857603|ref|YP_002244254.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213161142|ref|ZP_03346852.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213428230|ref|ZP_03360980.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|224583331|ref|YP_002637129.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238912611|ref|ZP_04656448.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|16420704|gb|AAL21072.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|194404097|gb|ACF64319.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|195631155|gb|EDX49715.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197214743|gb|ACH52140.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|205338411|gb|EDZ25175.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|206709406|emb|CAR33747.1| penicillin-binding protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467858|gb|ACN45688.1| D-alanyl-D-alanine endopeptidase; penicillin-binding protein 7 and
penicillin-binding protein 8 [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|267994231|gb|ACY89116.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|312913159|dbj|BAJ37133.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321224821|gb|EFX49884.1| Murein-DD-endopeptidase [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322615196|gb|EFY12118.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322617787|gb|EFY14683.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322624619|gb|EFY21450.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626930|gb|EFY23726.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322634116|gb|EFY30852.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322635693|gb|EFY32403.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640172|gb|EFY36836.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646405|gb|EFY42917.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649373|gb|EFY45809.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322656493|gb|EFY52782.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322661469|gb|EFY57693.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665643|gb|EFY61827.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667167|gb|EFY63334.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671173|gb|EFY67301.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675187|gb|EFY71264.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322680795|gb|EFY76830.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686970|gb|EFY82947.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323130495|gb|ADX17925.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323192734|gb|EFZ77961.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198834|gb|EFZ83933.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323205156|gb|EFZ90134.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323208199|gb|EFZ93143.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323215776|gb|EGA00519.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323222875|gb|EGA07231.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323223859|gb|EGA08162.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231222|gb|EGA15337.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233656|gb|EGA17748.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323237726|gb|EGA21786.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323245709|gb|EGA29703.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248926|gb|EGA32850.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323253002|gb|EGA36835.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323258678|gb|EGA42340.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323259510|gb|EGA43145.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323268293|gb|EGA51768.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271918|gb|EGA55334.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326624002|gb|EGE30347.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326628395|gb|EGE34738.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
gi|332989102|gb|AEF08085.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 315
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 105/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F L PF A ++D NT VI N+PD
Sbjct: 1 MLKFRASFLSLALMLAVPFAPQAVAKTAATTAASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV +L I+ + S + S ++ N L
Sbjct: 61 LVRPIASITKLMTAMVVLDARLPLDEILKVDISQTPE---MKGVYSRVRLNSEISRKNML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A F++ MN +K LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGL-SIHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|284047000|ref|YP_003397340.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter
woesei DSM 14684]
gi|283951221|gb|ADB53965.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Conexibacter
woesei DSM 14684]
Length = 284
Score = 123 bits (308), Expect = 4e-26, Method: Composition-based stats.
Identities = 64/256 (25%), Positives = 109/256 (42%), Gaps = 7/256 (2%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
P + + + D TG V+ + P S KLMTA V
Sbjct: 32 AVGTAPQNAQLKLPPHSAAIVADARTGRVLYADRPHRRLLIGSTAKLMTALVALERT--- 88
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L T A + S + + + L+ L+V S ND A+A+AE + +++
Sbjct: 89 --SLEDSFTAPAYAGDPTESRVGLGTDEQLLVGDLLRGLLVVSGNDAAIALAEGVAGSQE 146
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
FV+ MN ++ LG+S T + N G+ + A + + + D + +
Sbjct: 147 AFVELMNERAQELGMSDTRYGNPIGLDDGTSSSAADLVTLTRELRRHDAFREIVASPSVT 206
Query: 193 LEIK--GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
L + NTN +G L DG+KTG T A+G+ +V SA +G +++I+ +LG
Sbjct: 207 LSSGAVARTLENTNDLLGGPLAVDGVKTGHTKAAGYVLVGSATRGGRAVISAVLGTRSEA 266
Query: 251 TRNKVSASLLSMGFYN 266
R++ + +LL G
Sbjct: 267 DRDRATMTLLRHGLRR 282
>gi|74316101|ref|YP_313841.1| D-alanyl-D-alanine carboxypeptidase-like protein [Thiobacillus
denitrificans ATCC 25259]
gi|74055596|gb|AAZ96036.1| D-alanyl-D-alanine carboxypeptidase-like protein [Thiobacillus
denitrificans ATCC 25259]
Length = 321
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 61/262 (23%), Positives = 99/262 (37%), Gaps = 25/262 (9%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + D +G + AS+TKLMTA +V + L I
Sbjct: 45 APMPELSAQSVLVYDQASGQPLLAKNATMQTPIASITKLMTAMLVIDADQP----LDERI 100
Query: 81 TI-SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
TI S + + S GS+ T L L ++ S N A A+ S +FV MN
Sbjct: 101 TITSADRDTLKGTGSRLAIGSSYTRGQLLHLALIASDNRAAHALGRSYPGGIDRFVSTMN 160
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE----- 194
T++ LG+ T ++ G+ G+ +TA+D+A L +F + +
Sbjct: 161 RTARALGMHDTVYVEPTGL-SSGNRSTAQDLAKLVDFAYQNFSEIRNISTTGYYTLGTQR 219
Query: 195 -------------IKGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLI 240
+ + NTN G KTGF +G +V A ++ +I
Sbjct: 220 VVVKKKRKKARVLYRPVAFNNTNRLTRMDDWVIGLSKTGFINEAGHCLVMQAQIAERDVI 279
Query: 241 AVILGALDRNTRNKVSASLLSM 262
V+L A N R +A + +
Sbjct: 280 IVLLDATGTNRRAGDAARIKAW 301
>gi|258622600|ref|ZP_05717622.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM573]
gi|258585300|gb|EEW10027.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM573]
Length = 317
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 68/320 (21%), Positives = 124/320 (38%), Gaps = 32/320 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA--------------------ETNKLPYYTLLDTNTGH 40
M++ ++ ++ ++ + + A + ++D T
Sbjct: 1 MKKLSLLGSVFLVCSSLLIAAPAHSADSATATPKATVKKTVKKQELAANSALVIDLKTNE 60
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKG 99
VI + PD AS+TKLMTA V K + T + I+ K A E +S + G
Sbjct: 61 VIYSSNPDAVRPIASVTKLMTAIVTLDA----KLPMDTKLPITIKEAKEMKGIHSRVRIG 116
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
S ++ + L L ++ S N A ++A K F++ MNN +K LG+ T F+ G+
Sbjct: 117 SEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNNKAKALGMKNTRFVEPTGLS 176
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-AD 214
+ + + +L K + + K + +Y NTN V D
Sbjct: 177 EKNVSSARDLVLLLKASKKYPMLGQLSATEKKTVTFAKPRYSLDFRNTNRLVFNDNWKID 236
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
KTGFT A+G +V G + + V+L + + + L + +
Sbjct: 237 LTKTGFTNAAGHCLVMRTQMGKRQVAFVVLDTKGKLSPVGDANRLRTWL--ETGKVTPLP 294
Query: 275 YIIKDFYQQNLSNEVPNISE 294
K + +Q ++ IS+
Sbjct: 295 ADAKHYKKQRNQEQIAKISD 314
>gi|269836468|ref|YP_003318696.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter
thermophilus DSM 20745]
gi|269785731|gb|ACZ37874.1| Serine-type D-Ala-D-Ala carboxypeptidase [Sphaerobacter
thermophilus DSM 20745]
Length = 386
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 72/279 (25%), Positives = 110/279 (39%), Gaps = 19/279 (6%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+D TG +A PD P+ PAS TK++TA +V +
Sbjct: 36 APLAAPVPVPAITARAVLAVDLVTGATLAAVNPDMPYPPASTTKMLTALIV---RQHAAL 92
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--------S 126
I E ++ + G + + + L L+V S D A A+A +
Sbjct: 93 DEVITIEPGDLVDEVIYAHVGLRAGDRVAVRDLLAGLLVPSGGDAARALARVVGARLDPA 152
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP---- 182
FV MN ++ LG+ +THF+N G G +TARD+AIL + D
Sbjct: 153 ATNPRAAFVAEMNRVARRLGMRSTHFVNPDGRDAPGQRSTARDLAILGAALLKDPFLADV 212
Query: 183 --QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
Q + +KG + +TN +G LG G+KTG T G N+VA A +GD +I
Sbjct: 213 VAQPVTTISVKGPNARDITLWSTNHLLGE-LGVHGIKTGTTAEDGENLVAVAWRGDHQVI 271
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
V LG+ + R +L + +
Sbjct: 272 TVTLGSAEGE-RFNDVRALFDALGTHFRWVRLGRDGDHP 309
>gi|118465675|ref|YP_882938.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104]
gi|254776211|ref|ZP_05217727.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118166962|gb|ABK67859.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium avium 104]
Length = 298
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 54/261 (20%), Positives = 95/261 (36%), Gaps = 14/261 (5%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
S + + D ++G V+A P+ PAS K + A VV
Sbjct: 35 STQPAGSIPIPDGPAQTWIIADLDSGQVLAGRDPNVAHPPASTIKTLLAQVVLDE----- 89
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
L + ++ + K G + T L L++ S ND A +A + +
Sbjct: 90 VSLDATVVADAADTQVECNCVGIKPGRSYTARQLLDALLLVSGNDAANTLA-HMLGGPEA 148
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDF---PQYMHYF 188
V MN + LG + TH G+ +TA D+A++ +
Sbjct: 149 TVAKMNAKAAALGATNTHASTPSGLDGPNGSGSSTAHDLAVIFRAAMANPVFAQITAEPS 208
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246
+ + + N + + + GA G KTGFT A+ V +A +G + L+ ++
Sbjct: 209 AMFPGDNGLQPITNQDELLQRYPGAIGGKTGFTNAARKTFVGAAARGGRRLVIAMMYGLI 268
Query: 247 -LDRNTRNKVSASLLSMGFYN 266
+ +A+L GF
Sbjct: 269 KEGGPSYWDQAATLFDWGFAQ 289
>gi|41409077|ref|NP_961913.1| DacB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41397436|gb|AAS05296.1| DacB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 289
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 54/261 (20%), Positives = 95/261 (36%), Gaps = 14/261 (5%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
S + + D ++G V+A P+ PAS K + A VV
Sbjct: 26 STQPAGSIPIPDGPAQTWIIADLDSGQVLAGRDPNVAHPPASTIKTLLAQVVLDE----- 80
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
L + ++ + K G + T L L++ S ND A +A + +
Sbjct: 81 VSLDATVVADAADTQVECNCVGIKPGRSYTARQLLDALLLVSGNDAANTLA-HMLGGPEA 139
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDF---PQYMHYF 188
V MN + LG + TH G+ +TA D+A++ +
Sbjct: 140 TVAKMNAKAAALGATNTHASTPSGLDGPNGSGSSTAHDLAVIFRAAMANPVFAQITAEPS 199
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA-- 246
+ + + N + + + GA G KTGFT A+ V +A +G + L+ ++
Sbjct: 200 AMFPGDNGLQPITNQDELLQRYPGAIGGKTGFTNAARKTFVGAAARGGRRLVIAMMYGLI 259
Query: 247 -LDRNTRNKVSASLLSMGFYN 266
+ +A+L GF
Sbjct: 260 KEGGPSYWDQAATLFDWGFAQ 280
>gi|333025663|ref|ZP_08453727.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
Tu6071]
gi|332745515|gb|EGJ75956.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
Tu6071]
Length = 308
Score = 123 bits (307), Expect = 4e-26, Method: Composition-based stats.
Identities = 59/291 (20%), Positives = 115/291 (39%), Gaps = 19/291 (6%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + A + LLDT++G + D AS TK+MTA VV
Sbjct: 21 LVAPLVGTAQAASAPSVSAKGAFLLDTSSGKTLYSKAADTKRQMASTTKVMTATVVLDTK 80
Query: 70 KEKKAMLTTPITISKNASEYPPSNS-TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
T ++ +++ + G +T+ L ++ S D A A+A++
Sbjct: 81 GLNLDKKVTIKQAYRDYVVKKGASTSDLRTGDKVTVRQLLYATLLPSGCDAAYALADTFG 140
Query: 129 KTEKK------FVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKT-- 179
+ F+ MN +K+L + T + + G+ +YTT RD ++L+
Sbjct: 141 TGKTASARTANFISKMNAKAKSLKMKNTSYDSFDGIPTKSKNYTTPRDASLLARHALKSS 200
Query: 180 ------DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + + NTN +G++ GA G+KTG SG +V +A
Sbjct: 201 TFRTVVKSKSTKQKATASNGKSRTYTWYNTNKLLGSYKGAIGIKTGTASGSGPCLVFAAT 260
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
+ +++ VIL + R + +A ++ F + + + + Q++
Sbjct: 261 RNGKTVAGVILN---DSKRFEDAAKIMDYAFKSNSAKTMKLQTLPKGAQKD 308
>gi|300821762|ref|ZP_07101907.1| beta-lactamase [Escherichia coli MS 119-7]
gi|309793012|ref|ZP_07687440.1| beta-lactamase [Escherichia coli MS 145-7]
gi|331678083|ref|ZP_08378758.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli H591]
gi|300525604|gb|EFK46673.1| beta-lactamase [Escherichia coli MS 119-7]
gi|308123298|gb|EFO60560.1| beta-lactamase [Escherichia coli MS 145-7]
gi|331074543|gb|EGI45863.1| penicillin-binding protein 7 (PBP-7)
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Escherichia coli H591]
Length = 312
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L P A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|323972881|gb|EGB68079.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli TA007]
Length = 314
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|218462487|ref|ZP_03502578.1| probable serine-type D-Ala-D-Ala carboxypeptidase protein
[Rhizobium etli Kim 5]
Length = 494
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 59/260 (22%), Positives = 102/260 (39%), Gaps = 25/260 (9%)
Query: 3 QFLVIIAMAMLSNIF-PFLSIAETNKLPYY-TLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+ L I+++A + + AE Y ++D TG+V+ D PASLTK+M
Sbjct: 19 KLLAILSVAFTVVLVDSVNAEAEAANSKYAGIVVDAKTGNVLYSENADRLQYPASLTKMM 78
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+VF L++ + L TP+ S +A+ P+ + G T+T++ + L+ SAND +
Sbjct: 79 TLYLVFEALEQGRIRLDTPVPFSAHAAAQAPTKLGVRAGGTITVEQGILGLVTLSANDAS 138
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A LG + T R A +
Sbjct: 139 TA----------------------LGEMLARQRGSLRPADDCQGTRPRHDAHHLSQRPRS 176
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ + + KTG+T A+GFN+V+S +S++
Sbjct: 177 AEHGADDDGARPARLGIA-LRQHFPQYYGYFSTRAFKTGYTRAAGFNLVSSVQVDGKSIV 235
Query: 241 AVILGALDRNTRNKVSASLL 260
+V+LG R+ +L+
Sbjct: 236 SVVLGGTSGAARDAQMRNLI 255
>gi|257470787|ref|ZP_05634877.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC
49185]
gi|317064992|ref|ZP_07929477.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC
49185]
gi|313690668|gb|EFS27503.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC
49185]
Length = 376
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 71/347 (20%), Positives = 131/347 (37%), Gaps = 18/347 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ + ++ +A++ + E LL + G + D + A
Sbjct: 1 MKKTINVLLLAIVLISSTVFAKDSETLMKEETPSYKAILLGDDKGKIYYSENIDEKYPLA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTK+MT V F L++ + I +SK +++ S K+G TL++ +K +
Sbjct: 61 SLTKMMTLMVTFDQLEKGNIKMKDKIKVSKKSAQTGGSRIFMKEGDVFTLEDLIKATAIY 120
Query: 115 SANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSAT-HFMNAHGVVQ------HGHYTT 166
SAN+ A AIAE + KFV+ MN S +LGL F G+ TT
Sbjct: 121 SANNAAYAIAEYIGKGDVDKFVKMMNKKSADLGLEKELEFYTPAGLPSDMTKKGMDAGTT 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
+ K + + + + K N N +G G G+KTG G+
Sbjct: 181 RGIYKLSLAAAKYNKYMEIASIKETTIHNGKLKIKNRNLLLGE-EGIYGIKTGHHSKVGY 239
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ--N 284
NI + + + + V++G R++ + + + RK + + +
Sbjct: 240 NISVLSDKDNMKIFTVVVGGPTYQKRDESVLNQMEEFYEEYQFRKLTDKNVSIAKVPVFS 299
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
E ++ + T N + ++ ++K E L
Sbjct: 300 GDKEYADLYPDKNFTDILKKNSDIKISIKRNK-GVIAPVEAGKALGE 345
>gi|262280670|ref|ZP_06058453.1| D-alanyl-D-alanine endopeptidase [Acinetobacter calcoaceticus
RUH2202]
gi|262257570|gb|EEY76305.1| D-alanyl-D-alanine endopeptidase [Acinetobacter calcoaceticus
RUH2202]
Length = 348
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 8/251 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ + ++D TG V+ + AS+TKLMTA V +
Sbjct: 93 TSGYNAQPSVSARAALVMDAQTGEVLFSKNTNASVPIASITKLMTAVVTADARLNMSEEI 152
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
I + S+ST + G M L ++KS N A A+A + FV
Sbjct: 153 -MLEQIDFAGANGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRPAFVA 211
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN+ ++ LG++ATH+ + G+ + ++ARD+ IL+ + + + +
Sbjct: 212 AMNSKARALGMNATHYYESTGL-DPRNVSSARDLGILAS-TASQYGLIRQFSTTPTYDFN 269
Query: 197 GK----KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
K NTN V + KTG+ +G +V + + V+LG
Sbjct: 270 LGYRVLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSSQA 329
Query: 252 RNKVSASLLSM 262
RN + +LLS
Sbjct: 330 RNNDATNLLSW 340
>gi|15639787|ref|NP_219237.1| serine-type D-Ala-D-Ala carboxypeptidase (dacC) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189026025|ref|YP_001933797.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema pallidum subsp.
pallidum SS14]
gi|3323112|gb|AAC65769.1| serine-type D-Ala-D-Ala carboxypeptidase (dacC) [Treponema pallidum
subsp. pallidum str. Nichols]
gi|189018600|gb|ACD71218.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema pallidum subsp.
pallidum SS14]
gi|291060158|gb|ADD72893.1| serine-type D-Ala-D-Ala carboxypeptidase [Treponema pallidum subsp.
pallidum str. Chicago]
Length = 490
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 68/289 (23%), Positives = 113/289 (39%), Gaps = 32/289 (11%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ S Y + + +G ++A D P PASL KL+T VV L+
Sbjct: 81 TLQFTNLSAGSTPPPISARAYAIAEGGSGTLLASFCADLPLPPASLAKLVTCAVVMEALE 140
Query: 71 EKKAMLTTPITI----SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ I + S A S + G +++ + L + + S ND A +A +
Sbjct: 141 RGELHWQQRIRVPLAGSAQAFAPGSSLIFLRTGEYISVHDLLAGMNIASGNDAAYTLAYA 200
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ + F MN + GL+ T F+ G+ + TTARD + + +P+ +
Sbjct: 201 VAGSIPAFCTRMNTLVQKWGLTRTRFVEPSGL-SEHNVTTARDFVLFCCQYVRRWPENLA 259
Query: 187 YFQIKGLEIKGK-----KYPNTNWAVGTF----------------LGADGMKTGFTCASG 225
F + + + P T G DG+KTG+ SG
Sbjct: 260 RFHARSYFQRSNSPATSRIPPHTRFPATNTLLAATAARGNVSTAVPGCDGLKTGYIRESG 319
Query: 226 FNIVASAIQGDQSLIAVILGA------LDRNTRNKVSASLLSMGFYNKT 268
FN+ S+++GD +IAVILG + R + A+LL F +
Sbjct: 320 FNVALSSLRGDTRIIAVILGGAGNSIPEGKRIRARDGATLLYWAFTHFQ 368
>gi|117921730|ref|YP_870922.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. ANA-3]
gi|117614062|gb|ABK49516.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Shewanella sp. ANA-3]
Length = 318
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 54/255 (21%), Positives = 96/255 (37%), Gaps = 10/255 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + ++D T ++ + PD AS+TKLMTA V K
Sbjct: 37 ATAKKAPVKQQEVAANSALVVDLKTNEILYSSNPDAVRPIASVTKLMTAMVTLDA----K 92
Query: 74 AMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ + I+ + E S + GS ++ + L L ++ S N A ++A K
Sbjct: 93 LPMDEKLAININDTKEMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHK 152
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F++ MN +K LG+ T ++ G+ + + + +L + + K
Sbjct: 153 AFIKAMNAKAKALGMKNTRYVEPTGLSEKNVSSARDLVVLLKASEGYPMLGQLSSTEKKT 212
Query: 193 LEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ KY NTN V KTGFT +G +V + + V+L A
Sbjct: 213 VTFGKPKYSLDFRNTNRLVYKDNWNIHLTKTGFTNEAGHCLVMRTEMAKRQVAFVVLDAY 272
Query: 248 DRNTRNKVSASLLSM 262
+ T + L +
Sbjct: 273 GKYTHMADANRLRNW 287
>gi|262173460|ref|ZP_06041137.1| murein-DD-endopeptidase [Vibrio mimicus MB-451]
gi|261890818|gb|EEY36805.1| murein-DD-endopeptidase [Vibrio mimicus MB-451]
Length = 317
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 65/319 (20%), Positives = 121/319 (37%), Gaps = 30/319 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA--------------------ETNKLPYYTLLDTNTGH 40
M++ ++ ++ ++ + + A + ++D T
Sbjct: 1 MKKLSLLGSVFLVCSSLLIAAPAHSADSATATPKATVKKTVKKQELAANSALVIDLKTNE 60
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100
VI + PD AS+TKLMTA V + L I + A E +S + GS
Sbjct: 61 VIYSSNPDAVRPIASVTKLMTAIVTLDAKLPMETKLPITI---QEAREMKGVHSRVRIGS 117
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
++ + L L ++ S N A ++A K F++ MN+ +K LG+ T F+ G+ +
Sbjct: 118 EISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNSKAKALGMKNTRFVEPTGLSE 177
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADG 215
+ + +L K + + K + +Y NTN V D
Sbjct: 178 KNVSSARDLVLLLKASKKYPMLGQLSATEKKTVTFAKPRYSLDFRNTNRLVFNDNWKIDL 237
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
KTGFT A+G +V G + + V+L + + + L + +
Sbjct: 238 TKTGFTNAAGHCLVMRTQMGKRQVAFVVLDTKGKLSPVGDANRLRTWL--ETGKVTPLPA 295
Query: 276 IIKDFYQQNLSNEVPNISE 294
K + +Q ++ IS+
Sbjct: 296 DAKQYKKQRNQEQIAKISD 314
>gi|330827968|ref|YP_004390920.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
veronii B565]
gi|328803104|gb|AEB48303.1| D-alanyl-D-alanine carboxypeptidase family protein [Aeromonas
veronii B565]
Length = 284
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 49/243 (20%), Positives = 91/243 (37%), Gaps = 8/243 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + + TG VI+E + ASLTKLMTA VV L +T++
Sbjct: 26 PNLSSAAFVVANHRTGEVISERNGNRVMPIASLTKLMTALVVLDA----NLRLNEMLTVT 81
Query: 84 K-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ + S GS ++ L + ++ S N A A+A ++ FV+ MN +
Sbjct: 82 NADIDRIKGTGSRLAIGSRLSRAEMLHIALMSSENRAASALARHYPGGQRAFVEAMNAKA 141
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ LG+ T + ++ G+ T + + + + + ++
Sbjct: 142 RMLGMWNTRYADSTGLNPRNVSTAQDLAKLAAAAASYPLIRQYSTDEQSYVRTNKRQLHY 201
Query: 203 TNWAVGTFLGADGM---KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N G KTG+ +G +V + +I V+L A N R + +
Sbjct: 202 LNSNRLIREGQWEFTLSKTGYIREAGRCLVLGTKVNREPVIMVLLNAETTNDRVADAKRI 261
Query: 260 LSM 262
+
Sbjct: 262 KTW 264
>gi|169797496|ref|YP_001715289.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter baumannii
AYE]
gi|260556388|ref|ZP_05828607.1| D-alanyl-D-alanine endopeptidase [Acinetobacter baumannii ATCC
19606]
gi|169150423|emb|CAM88320.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter baumannii
AYE]
gi|260410443|gb|EEX03742.1| D-alanyl-D-alanine endopeptidase [Acinetobacter baumannii ATCC
19606]
Length = 348
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + ++D TG V+ + AS+TKLMTA V + T
Sbjct: 97 NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEI-TLE 155
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I + S+ST + G M L ++KS N A A+A + FV MN
Sbjct: 156 QIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNA 215
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
++ LG++ATH+ + G+ + ++ARD+ IL+ + + + +
Sbjct: 216 KARALGMNATHYYESTGL-DPRNVSSARDLGILAS-TASQYGLIRQFSTTPTYDFNLGYR 273
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTG+ +G +V + + V+LG RN
Sbjct: 274 VLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQARNND 333
Query: 256 SASLLSM 262
+ +LL
Sbjct: 334 ATNLLGW 340
>gi|78066908|ref|YP_369677.1| murein-DD-endopeptidase [Burkholderia sp. 383]
gi|77967653|gb|ABB09033.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Burkholderia sp. 383]
Length = 388
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 99/248 (39%), Gaps = 9/248 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D N+G + + AS++KLMTA VV
Sbjct: 126 TPDALALRSSVAYVVDQNSGEPLFDKNSHAVVPIASISKLMTAMVVLDSKTPMT---DQI 182
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 183 EVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYAGGRPAFIAAMN 242
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIKG 197
+K+LG++ THF N+ G+ + ++ARD+ + Q+ + K
Sbjct: 243 AKAKSLGMTDTHFENSTGL-SSSNVSSARDLVKMVNAAYQYPMIRQFSTDRTYEVYTGKR 301
Query: 198 KKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
N+ A+ G KTGF +G +V A + ++ V+L + + +R
Sbjct: 302 NLVYNSTNALIRGNGSWDIGLQKTGFINEAGECLVMQATIHGKPMVMVLLDSFGKYSRFA 361
Query: 255 VSASLLSM 262
+A L +
Sbjct: 362 DAARLRNW 369
>gi|154710434|gb|ABS84279.1| DacC [Treponema paraluiscuniculi]
Length = 490
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 69/289 (23%), Positives = 114/289 (39%), Gaps = 32/289 (11%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ S S Y + + +G ++A D P PASL KL+T VV L+
Sbjct: 81 TLQSTNLSAGSTPPPISARAYAIAEGGSGTLLASFCADLPLPPASLAKLVTCAVVMEALE 140
Query: 71 EKKAMLTTPITI----SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ I + S A S + G +++ + L + + S ND A +A +
Sbjct: 141 RGELHWQQRIRVPLAGSAQAFAPGSSLIFLRTGEYISVHDLLAGMNIVSGNDAAYTLAYA 200
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ + F MN + GL+ T F+ G+ + TTARD + + +P+ +
Sbjct: 201 VAGSIPAFCTRMNTLVQKWGLTRTRFVEPSGL-SEHNVTTARDFVLFCCQYVRRWPENLA 259
Query: 187 YFQIKGLEIKGK-----KYPNTNWAVGTF----------------LGADGMKTGFTCASG 225
F + + + P T G DG+KTG+ SG
Sbjct: 260 RFHARSYFQRSNSPATSRIPPHTRFPATNTLLAATAARGNVSTAVPGCDGLKTGYIRESG 319
Query: 226 FNIVASAIQGDQSLIAVILGA------LDRNTRNKVSASLLSMGFYNKT 268
FN+ S+++GD +IAVILG + R + A+LL F +
Sbjct: 320 FNVALSSLRGDTRIIAVILGGAGNSIPEGKRIRARDGATLLYWAFTHFQ 368
>gi|94991766|ref|YP_599865.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS2096]
gi|94545274|gb|ABF35321.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS2096]
Length = 275
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 56/268 (20%), Positives = 114/268 (42%), Gaps = 21/268 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + ++ +A+ + + +D +G V+ E AS++KL+
Sbjct: 2 IKRLISLVVIALFFAASTVSGEEYSVTAKHAIAVDLESGKVLYEKDAKEVVPVASVSKLL 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
T Y+V+ + + K +P+TIS ++ T+ L L+V +AN
Sbjct: 62 TTYLVYKEVSKGKLNWDSPVTISNYPYELTTNYTISNVPLDKRKYTVKELLSALVVNNAN 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHGH 163
A+A+AE + TE KFV M + G+S +N+ G+ +
Sbjct: 122 SPAIALAEKIGGTEPKFVDKMKKQLRQWGISDAKVVNSTGLTNHFLGANTYPNTEPDDEN 181
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTG 219
A D+AI++ + +FP+ + G+ + N+ + G DG+ G
Sbjct: 182 CFCATDLAIIARHLLLEFPEVLKLSSKSSTIFAGQTIYSYNYMLKGMPCYREGVDGLFVG 241
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGAL 247
++ +G + VA++++ +I V+L A
Sbjct: 242 YSKKAGASFVATSVENQMRVITVVLNAD 269
>gi|262037478|ref|ZP_06010938.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii
F0264]
gi|261748513|gb|EEY35892.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii
F0264]
Length = 356
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 58/335 (17%), Positives = 115/335 (34%), Gaps = 8/335 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+R+ +I+ + ++S+ + E L+ G++ E AS+TK+M
Sbjct: 4 LRKIFIILTIFVISSFA--FAEGENYFDYKAILIGDTNGNIAREENSYAVRPLASVTKVM 61
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T + + + L + +S+ A+ P D I S N
Sbjct: 62 TIMLTLDKVHSGEISLNDRVVVSEAAASVPYGIKLVAGNEYTVRDLLKATAIRSSNNAAY 121
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD------MAILS 174
+FV MNN ++ G + F + HG+ + +
Sbjct: 122 ALAEYVSNGNVYEFVNSMNNKARQSGWDSLRFCSPHGLPPSYTGSCMDQGNARDLYKMAM 181
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + + ++ K TN +G G DG+KTG+ A+G NI+ +A +
Sbjct: 182 KAVTYKEYMNIAKESVDFIDHGNIKLTATNHLLGKVPGVDGLKTGYHNAAGSNIILTAKR 241
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
+ +I VILG+ R+ + ++ F N + KI + + +
Sbjct: 242 NGERMILVILGSTKAKNRDAIGEKEINDYFINGSKSFKIIDKDTAVAYAKIGKDRYGLYP 301
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
T K + K + + + +
Sbjct: 302 SEDVTVKSKNGFEKPKLTYKVALKDNVSRKDVGQV 336
>gi|326381944|ref|ZP_08203637.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia
neofelifaecis NRRL B-59395]
gi|326199370|gb|EGD56551.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gordonia
neofelifaecis NRRL B-59395]
Length = 416
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 49/263 (18%), Positives = 87/263 (33%), Gaps = 25/263 (9%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ E + + D ++G VIA P + PAS K++ A V L +
Sbjct: 99 PLPERLNSAGWLIADLDSGRVIAAKDPHGRYRPASTIKVLLALVALDE-----LPLDKQV 153
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ + G T+ + L L+V S ND A A+A + MN
Sbjct: 154 EATPEDWSMEGDSCGMGPGGHYTVRDLLSGLVVVSGNDCANALA-GQLGGHDAALAKMNA 212
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----- 195
+ LG T + G+ G T+ D+A+L + + +K
Sbjct: 213 KAAELGARDTRATSPSGLDAPGMSTSPYDLALLFREAMGN-ATFRQLISMKNYTFPGYPK 271
Query: 196 ----------KGKKYPNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+N + G G KTG+T + V +A + + ++ +
Sbjct: 272 RPDVPDDVDHPAWTMGTSNPLLRDDWPGMLGGKTGYTDDALKTFVGAAERNGRRIVITQM 331
Query: 245 GA--LDRNTRNKVSASLLSMGFY 265
N + + + GF
Sbjct: 332 YGLNEADNMYAQQAERMFDYGFA 354
>gi|312973616|ref|ZP_07787788.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1827-70]
gi|310332211|gb|EFP99446.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1827-70]
gi|323176971|gb|EFZ62561.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 1180]
Length = 311
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L P A ++D NT VI N+PD
Sbjct: 1 MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 61 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|148545048|ref|YP_001272418.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri DSM
20016]
gi|184154381|ref|YP_001842722.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM
1112]
gi|227364195|ref|ZP_03848291.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
MM2-3]
gi|325683399|ref|ZP_08162915.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
[Lactobacillus reuteri MM4-1A]
gi|148532082|gb|ABQ84081.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
[Lactobacillus reuteri DSM 20016]
gi|183225725|dbj|BAG26242.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM
1112]
gi|227070740|gb|EEI09067.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
MM2-3]
gi|324977749|gb|EGC14700.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
[Lactobacillus reuteri MM4-1A]
Length = 403
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 66/367 (17%), Positives = 142/367 (38%), Gaps = 35/367 (9%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAET-NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ + I+++ M+ + +A + D +TG +I + D AS+TK
Sbjct: 1 MKKLTVFILSLFMMLMVGSQSVLANNRIDASAAIMADASTGQIIYKQNVDKALPVASITK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114
L+T V+ +++K+ T + I+ ++ S+ K G + ++ + +VK
Sbjct: 61 LLTILVIEDEIQQKQLSWDTQVKITPEIAAISNDAAYSSIGLKSGQSYSVRTLINAALVK 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162
SA+ VA+A + +F M +K +G++ T+ +N+ G+
Sbjct: 121 SADGATVALATATGDGTDEFNLKMMQKAKKIGMTKTNIVNSVGLDNGDMKSFKLADLPNN 180
Query: 163 --HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLG--- 212
+ +ARD+AILS T +P+ + K ++ + K N N +
Sbjct: 181 AANTMSARDVAILSQYFVTHYPELLQITAQKEVKFQIAKDQVKTEKNLNKMLPGEQYAVK 240
Query: 213 ---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLS--MGFY 265
DG+KTG + ++G ++ +I VIL + ++ R K + +L
Sbjct: 241 GVTIDGLKTGTSDSAGACFASTGKYQGHRIITVILHSKGSNKDNRFKATQNLYKILKTED 300
Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ K + + + + ++V + + K+ K
Sbjct: 301 HLQKIKVPSSVTTRKVANGVEKTMKLTPQQVTIWSPYDTKTDYTIGTQYKKKKLEAPIWK 360
Query: 326 ITLLKNK 332
+ +
Sbjct: 361 GERVGSL 367
>gi|318062549|ref|ZP_07981270.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG]
gi|318081336|ref|ZP_07988668.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF]
Length = 308
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 59/291 (20%), Positives = 115/291 (39%), Gaps = 19/291 (6%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + A + LLDT++G + D AS TK+MTA VV
Sbjct: 21 LVAPLVGTAQAASAPSVSAKGAFLLDTSSGKTLYSKAADTKRQMASTTKVMTATVVLDTK 80
Query: 70 KEKKAMLTTPITISKNASEYPPSNS-TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
T ++ +++ + G +T+ L ++ S D A A+A++
Sbjct: 81 GLNLDKKITIKQAYRDYVVKKGASTSDLRTGDKVTVRQLLYATLLPSGCDAAYALADTFG 140
Query: 129 KTEKK------FVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKT-- 179
+ F+ MN +K+L + T + + G+ +YTT RD ++L+
Sbjct: 141 TGKTASARTANFISKMNAKAKSLKMKNTSYDSFDGIPTKSKNYTTPRDASLLARHALKSS 200
Query: 180 ------DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + + NTN +G++ GA G+KTG SG +V +A
Sbjct: 201 TFRTVVKSKSTKQKATASNGKSRTYTWYNTNKLLGSYKGAIGIKTGTASGSGPCLVFAAT 260
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
+ +++ VIL + R + +A ++ F + + + + Q++
Sbjct: 261 RNGKTVAGVILN---DSKRFEDAAKIMDYAFKSNSAKTMKLQTLPKGAQKD 308
>gi|238798922|ref|ZP_04642387.1| D-alanyl-D-alanine endopeptidase [Yersinia mollaretii ATCC 43969]
gi|238717232|gb|EEQ09083.1| D-alanyl-D-alanine endopeptidase [Yersinia mollaretii ATCC 43969]
Length = 313
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 56/247 (22%), Positives = 92/247 (37%), Gaps = 10/247 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
++D T I N D AS+TKLMTA VV K L I+
Sbjct: 40 APLELASGSAMVVDLQTNKAIYANNADEVVPIASITKLMTAMVVLDA----KLPLDEIIS 95
Query: 82 IS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ E S + S ++ + L L ++ S N A ++A F++ MN
Sbjct: 96 VDIHQTKEMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNA 155
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+K+LG++ T ++ G+ + T +L + + K + Y
Sbjct: 156 KAKSLGMTKTRYVEPTGLSINNVSTARDLTKLLIATKQYPLIGQLSTTTEKMATFREPNY 215
Query: 201 ----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
NTN V KTGFT +G + + G++ + V+L A + T
Sbjct: 216 TLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGNRPVALVVLDAFGKYTHFAD 275
Query: 256 SASLLSM 262
+ L S
Sbjct: 276 ANRLRSW 282
>gi|226951746|ref|ZP_03822210.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter sp. ATCC
27244]
gi|294648989|ref|ZP_06726437.1| D-alanyl-D-alanine endopeptidase [Acinetobacter haemolyticus ATCC
19194]
gi|226837536|gb|EEH69919.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter sp. ATCC
27244]
gi|292825124|gb|EFF83879.1| D-alanyl-D-alanine endopeptidase [Acinetobacter haemolyticus ATCC
19194]
Length = 354
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 62/247 (25%), Positives = 103/247 (41%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
S + ++D TG V+ + AS+TK+MTA V + T
Sbjct: 103 SSQPSVNARAALVMDAQTGEVLFSKNTNTALPIASITKVMTAVVTADARLNMSEEV-TLQ 161
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I + S+ST + G +M L ++KS N A A+A + F MN+
Sbjct: 162 QIDFAGAGGKNSSSTLRAGDSMNRAELLLFALMKSENPAAAALARTYPGGRTAFYAAMNS 221
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
+K LG++ATHF+ + G+ G+ ++ARD+ IL + + + +
Sbjct: 222 KAKQLGMTATHFIESTGL-HPGNVSSARDLGILVS-AASQYGLIRQFSTTPTYDFNLGYR 279
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTG+ +G +V + + V+LGA RN
Sbjct: 280 VLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVVVLLGAPSTQARNSD 339
Query: 256 SASLLSM 262
+ +LL+
Sbjct: 340 ATNLLTW 346
>gi|115523726|ref|YP_780637.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisA53]
gi|115517673|gb|ABJ05657.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
palustris BisA53]
Length = 385
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 77/218 (35%), Positives = 124/218 (56%)
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
F+ G+ +T+DNALK+++VKSAND+AV +AE + + F + MN ++ LG++ T+++
Sbjct: 1 MGFRAGTQVTVDNALKMMMVKSANDMAVVLAEGVGGSIDGFSEQMNRAAQRLGMTQTNYV 60
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
N +G+ G T+ARD+AIL+ I D P+Y ++ I + + PN N +G + GA
Sbjct: 61 NPNGLPADGQVTSARDLAILARAIIHDLPEYEYFVHIPAIRFGKRVTPNFNRLIGRYPGA 120
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
DGMKTGF CASGFN+VASA + + LIA++LGA R + LL GF
Sbjct: 121 DGMKTGFICASGFNLVASATRNGRRLIAIVLGAPSSQARALKAMQLLERGFGANQLSWLQ 180
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+ + PN+ +E+C +++ + +
Sbjct: 181 PALGSVDNLAPIDAAPPNLRDEMCGPKRKRPASDESAE 218
>gi|193212918|ref|YP_001998871.1| Serine-type D-ala-D-ala carboxypeptidase [Chlorobaculum parvum NCIB
8327]
gi|193086395|gb|ACF11671.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobaculum parvum NCIB
8327]
Length = 411
Score = 123 bits (307), Expect = 5e-26, Method: Composition-based stats.
Identities = 70/334 (20%), Positives = 142/334 (42%), Gaps = 15/334 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M F +I + + + + + + + +T + + + D +PASLTK+M
Sbjct: 23 MLVFGALILLHGNAVAKQKVVPQGEDAVTSFLVKETGSSNFLKAKNIDQRISPASLTKIM 82
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T + + L +TI A++ P+ + FK G + L + + +V S+ND A
Sbjct: 83 TCMLAIESGR-----LDDVVTIPPEATKVEPTRAGFKPGDRIRLRDLVAAAMVNSSNDAA 137
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---QHGHYTTARDMAILSWRI 177
AIA L + FV MN ++ LG++ T F N G G+++TARD+ L+
Sbjct: 138 FAIAIHLGGSLNGFVSKMNARARALGMTHTRFTNPAGYDRGSYAGNHSTARDLMKLTEHA 197
Query: 178 K-----TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ + K + N + + + G+KTG+T +G ++A A
Sbjct: 198 IRYSEFNKIAKLDRVVFNELNTGKRYSLRSHNKLLDRYPYSVGIKTGYTSKAGPCLIARA 257
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ + ++ ++L A R ++++S+ GF +T ++ K ++ + E+
Sbjct: 258 VCEGKDMLVIMLHAKT--DRWELASSMFDQGFNLETTPRRTLRGKKTQIEEIRATEIKKS 315
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
++ K +K+ K+ + E +
Sbjct: 316 QAAKKSSTKSSKTAVVSVKKPSVKKPATVPAEVV 349
>gi|169634636|ref|YP_001708372.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter baumannii
SDF]
gi|169153428|emb|CAP02565.1| D-alanyl-D-alanine endopeptidase, penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter baumannii]
Length = 348
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 98/247 (39%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + ++D TG V+ + AS+TKLMTA V + T
Sbjct: 97 NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEI-TLE 155
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I + S+ST + G M L ++KS N A A+A + FV MN
Sbjct: 156 QIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNA 215
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
+ LG++ATH+ + G+ + ++ARD+ IL+ + + + +
Sbjct: 216 KAHALGMNATHYYESTGL-DPRNVSSARDLGILAS-TASQYGLIRQFSTTPTYDFNLGYR 273
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTG+ +G +V + + V+LG RN
Sbjct: 274 VLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQARNND 333
Query: 256 SASLLSM 262
+ +LL
Sbjct: 334 ATNLLGW 340
>gi|145300681|ref|YP_001143522.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7
[Aeromonas salmonicida subsp. salmonicida A449]
gi|142853453|gb|ABO91774.1| D-alanyl-D-alanine carboxypeptidase; penicillin binding protein 7
[Aeromonas salmonicida subsp. salmonicida A449]
Length = 275
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 10/244 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ ++D NTG + + ASLTKLMTA VV + L ++I +
Sbjct: 33 QLRSSSALVVDVNTGKTLYQKNATRVRPIASLTKLMTALVVLE----GRQSLNQTLSIDQ 88
Query: 85 NASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
N + + + + +T +AL L ++ S N +A A+A + F++ MNN ++
Sbjct: 89 NDRDNVKHTYSRIRFGTKVTRRDALHLTLMSSENRMASALARHYPGGRQAFIRAMNNKAR 148
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-- 201
LG+ + F ++ G+ T ++S + + + + Y
Sbjct: 149 QLGMRNSRFHDSTGLSTRNVSTAQDLAKLISAAYRQPLIRQFTQDTNRDMRFNTPAYRLM 208
Query: 202 --NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
NTN V KTGFT +G +V A + L V+L ++ + T +
Sbjct: 209 FNNTNPLVKNPDWGVRLSKTGFTDEAGRCLVMRAKPDSRELAIVLLNSVGKRTPIGDANR 268
Query: 259 LLSM 262
+
Sbjct: 269 IRKW 272
>gi|187924564|ref|YP_001896206.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
phytofirmans PsJN]
gi|187715758|gb|ACD16982.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
phytofirmans PsJN]
Length = 395
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 53/247 (21%), Positives = 96/247 (38%), Gaps = 8/247 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D N+G + + AS+TKLMTA VV +
Sbjct: 133 TPDALMLRSSVAYVIDQNSGESLFDKNSRAVVPIASITKLMTAMVVLDSKEPMT---DQI 189
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 190 EVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFLAAMN 249
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM---HYFQIKGLEIK 196
+K LG++ THF N G+ + ++ARD+ + + +
Sbjct: 250 AKAKQLGMTDTHFENPTGLTS-QNVSSARDLVKMVNAAYQYPIIRRFSTDHSYEVYTGKR 308
Query: 197 GKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN V G KTGF +G +V A + +I V+L + + +R
Sbjct: 309 SLAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRPMIMVLLDSSGKYSRFAD 368
Query: 256 SASLLSM 262
+ L +
Sbjct: 369 ATRLRTW 375
>gi|193076105|gb|ABO10712.2| D-alanyl-D-alanine endopeptidase penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter baumannii
ATCC 17978]
Length = 348
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + ++D TG V+ + AS+TKLMTA V + T
Sbjct: 97 NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEI-TLE 155
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I + S+ST + G M L ++KS N A A+A + FV MN
Sbjct: 156 QIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNA 215
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
++ LG++ATH+ + G+ + ++ARD+ IL+ + + + +
Sbjct: 216 KARALGMNATHYYESTGL-DPRNVSSARDLGILAS-TASQYGLIRQFSTTPTYDFNLGYR 273
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTG+ +G +V + + V+LG RN
Sbjct: 274 VLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQARNND 333
Query: 256 SASLLSM 262
+ +LL
Sbjct: 334 ATNLLGW 340
>gi|157369595|ref|YP_001477584.1| D-alanyl-D-alanine endopeptidase [Serratia proteamaculans 568]
gi|157321359|gb|ABV40456.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
proteamaculans 568]
Length = 309
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 55/248 (22%), Positives = 94/248 (37%), Gaps = 10/248 (4%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ ++D T V+ PD AS+TKLMTA V ML+ I
Sbjct: 36 AAEPELASGSAMVVDMQTHKVMYARNPDEVVPIASITKLMTAMVTLDAHLPLDEMLSVDI 95
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ S + S ++ + L L ++ S N A ++A F++ MN
Sbjct: 96 HQTPE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYGAFIKAMNA 152
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEI 195
+K+LG++ T ++ G+ + +TARD+ L + +
Sbjct: 153 KAKSLGMTNTRYVEPTGL-SIHNVSTARDLTKLLIATKQYPLIGQLSTTTERMASFKDPN 211
Query: 196 KGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ NTN V KTGFT +G + + G +S+ V+L A + T
Sbjct: 212 YTLPFRNTNHLVYNQKWNIQLTKTGFTNEAGHCLAMRTMIGSRSVSLVVLDAFGKYTHFA 271
Query: 255 VSASLLSM 262
+ L +
Sbjct: 272 DANRLRTW 279
>gi|194467285|ref|ZP_03073272.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
100-23]
gi|194454321|gb|EDX43218.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
100-23]
Length = 403
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 65/367 (17%), Positives = 140/367 (38%), Gaps = 35/367 (9%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAET-NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ + I+++ M+ +A + D +TG +I + D AS+TK
Sbjct: 1 MKKLTVFILSLFMMLMGGSQSVLANNRIDASAAIMADASTGQIIYKRNVDKALPVASITK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114
L+T V+ +++K+ T + I+ ++ S+ K G + ++ + +VK
Sbjct: 61 LLTILVIEDEIQQKQLSWDTQVKITPEIAAISNDAAYSSIGLKSGQSYSVRTLINAALVK 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162
SA+ VA+A + +F M +K +G++ T+ +N+ G+
Sbjct: 121 SADGATVALATATGDGTDEFNLKMMQKAKKIGMTKTNIVNSVGLDNGDMKSFKLADLPNN 180
Query: 163 --HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGA-- 213
+ +ARD+AILS +P+ + K ++ + K N N +
Sbjct: 181 AANTMSARDVAILSQYFVKHYPELLQITAQKEVKFQIAKDQVKTEKNLNKMLPGEQYVVK 240
Query: 214 ----DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLS--MGFY 265
DG+KTG + ++G ++ +I VIL + ++ R K + +L
Sbjct: 241 GVTIDGLKTGTSDSAGACFASTGKYQGHRIITVILHSKGSNKDNRFKATQNLYKILKTED 300
Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ K + + + + ++V + + K+ K
Sbjct: 301 HLQKIKVPSSVTTRKVANGVEKTMKLTPQQVTIWSPYDTKTDYTIGTQYKKKKLEAPIWK 360
Query: 326 ITLLKNK 332
+ +
Sbjct: 361 GERVGSL 367
>gi|293396038|ref|ZP_06640319.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582]
gi|291421536|gb|EFE94784.1| penicillin-binding protein 7 [Serratia odorifera DSM 4582]
Length = 274
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 105/266 (39%), Gaps = 8/266 (3%)
Query: 2 RQFLVIIAMAMLSNI--FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
R+ LV+ A+ + S + +++ N G + + + ASL+KL
Sbjct: 9 RRPLVLFALFSQLWLIGAAHASAPQALHSRAVLVVNANNGKTLYQKQANRRMPIASLSKL 68
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTA VV + + + ++S GST++ + L + ++ S N
Sbjct: 69 MTAMVVLDNKRPMG---NRVKVTAADRDLLKNTHSRLTVGSTLSRRDMLHIALMSSENRA 125
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A A++ + FV MN ++ LG++ T F + G+ T + +++ +
Sbjct: 126 AAALSRYYPGGRRAFVAKMNQKARALGMAHTRFYDPTGLTPRNVSTARDLLKMVNNAYRY 185
Query: 180 DFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGD 236
++ + + + + Y ++N + KTGFT +G ++ +
Sbjct: 186 QSIRHFSTDKQQIVRPGRGQLVYRSSNGLINNPSWKIQLQKTGFTNEAGHCLIMRTVIKG 245
Query: 237 QSLIAVILGALDRNTRNKVSASLLSM 262
Q +I ++LG+ R + L
Sbjct: 246 QPVIMILLGSQQRYGHYSDAIRLKQW 271
>gi|225023959|ref|ZP_03713151.1| hypothetical protein EIKCOROL_00826 [Eikenella corrodens ATCC
23834]
gi|224942984|gb|EEG24193.1| hypothetical protein EIKCOROL_00826 [Eikenella corrodens ATCC
23834]
Length = 314
Score = 122 bits (306), Expect = 6e-26, Method: Composition-based stats.
Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 9/249 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+++ +G ++ + D AS++KLM A VV + L
Sbjct: 64 AAVAGPLLTSQSALIMNGRSGEILYQKGIDQVRPIASISKLMAAMVVLDARQNMNETLEI 123
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ S G+T+T L L ++ S N A+A + F+ M
Sbjct: 124 TEA---EIDRLKGTGSRLSVGTTLTRREMLHLGLMSSENRAIHALARNYPGGLPAFMSAM 180
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW----RIKTDFPQYMHYFQIKGLE 194
N +++LG+ T F + G+ + +TARD++++ + +
Sbjct: 181 NRKAQSLGMQQTRFYDPTGL-DFRNVSTARDLSLMVRAAHEYPLIRQFSTSNSGSAQTSN 239
Query: 195 IKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ ++Y N+N V KTG+ SG ++V A Q LI V+L + TR
Sbjct: 240 GRVQQYRNSNALVREGTWNISLQKTGYIRESGRSMVLYANVQRQPLIIVLLNSPSPTTRV 299
Query: 254 KVSASLLSM 262
+ ++ +
Sbjct: 300 NDARAIQNW 308
>gi|126434529|ref|YP_001070220.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
sp. JLS]
gi|126234329|gb|ABN97729.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
sp. JLS]
Length = 264
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 12/259 (4%)
Query: 11 AMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
A L+ P ++A + L D ++G V+A P P PAS K++ A VV
Sbjct: 14 AALAQPQPAGAVALPEGPAQAWLLADLDSGRVLASRNPYEPHAPASTIKVLLAMVVLDH- 72
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+++ +E S G T L L++ S ND A +A+ +
Sbjct: 73 ----LSPDNFARANRSHTEVECSCVGLTPGQPYTTRQLLSALLMVSGNDAANMLAD-MLG 127
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ V MN + +G +T + G+ TT D+A++ ++P
Sbjct: 128 GQRAAVAAMNRKAALVGAKSTRASSPSGLDGPGWESITTPHDLAVMLRAAL-NYPLIAQI 186
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ GK N N + + G KTGFT + V +A +G++ L V +
Sbjct: 187 MRSPTAPFPGKTLTNQNELLSRYPGDIAGKTGFTNLARKTYVGAAQRGNRRLAVVQMYGT 246
Query: 248 DRNTRNKVSASLLSMGFYN 266
+ L GF
Sbjct: 247 G--DLYGQAIGLFDYGFSQ 263
>gi|156933292|ref|YP_001437208.1| D-alanyl-D-alanine endopeptidase [Cronobacter sakazakii ATCC
BAA-894]
gi|156531546|gb|ABU76372.1| hypothetical protein ESA_01104 [Cronobacter sakazakii ATCC BAA-894]
Length = 310
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 12/246 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D T V+ ++PD AS+TK+MTA VV L +T+
Sbjct: 40 PQIASGSAMIVDLRTNEVLFSSHPDLVRPIASITKVMTAMVVLDAS----LPLDEMLTVD 95
Query: 84 -KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ E S + S ++ N L L ++ S N A ++A F++ MN +
Sbjct: 96 ISHTPEMKGIYSRVRLNSQISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKA 155
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKG 197
K LG+ THF+ G+ + +TARD+ L + +
Sbjct: 156 KALGMRNTHFVEPTGL-SIHNVSTARDLTKLLIATKQYPLIGQLSTTREEMATFSNPTYT 214
Query: 198 KKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ NTN V KTGFT A+G ++ + ++ + V++ A + T +
Sbjct: 215 LPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLMMRTLIKNRPVTLVVMDAFGKYTHFADA 274
Query: 257 ASLLSM 262
+ L +
Sbjct: 275 SRLRTW 280
>gi|238784240|ref|ZP_04628252.1| D-alanyl-D-alanine endopeptidase [Yersinia bercovieri ATCC 43970]
gi|238714807|gb|EEQ06807.1| D-alanyl-D-alanine endopeptidase [Yersinia bercovieri ATCC 43970]
Length = 313
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 62/261 (23%), Positives = 95/261 (36%), Gaps = 10/261 (3%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A+A ++D T VI N PD AS+TKLMTA VV
Sbjct: 26 LAVASGGTTETKGKAPLELASGSAMVVDLQTNKVIYANNPDEVVPIASITKLMTAMVVLD 85
Query: 68 FLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
K L I++ E S + S ++ + L L ++ S N A ++A
Sbjct: 86 A----KLPLDEIISVDVHQTKEMKGVFSRVRVNSEISRKDMLLLALMSSENRAAASLAHH 141
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
FV MN +K+LG++ TH+ G+ T +L + +
Sbjct: 142 YPGGYNAFVNAMNVKAKSLGMTKTHYTEPTGLSIDNVSTARDLTKLLIATKQYPLIGQLS 201
Query: 187 YFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIA 241
K + Y NTN V KTGFT +G + + G + +
Sbjct: 202 TTTEKMATFREPNYTLPFRNTNHLVYNDKWNIQLTKTGFTNQAGHCLAMRTVIGSRPVAL 261
Query: 242 VILGALDRNTRNKVSASLLSM 262
V+L A + T + L S
Sbjct: 262 VVLDAFGKYTHFADANRLRSW 282
>gi|323944951|gb|EGB41016.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli H120]
Length = 314
Score = 122 bits (306), Expect = 7e-26, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L P A ++D NT VI N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKVIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|184154585|ref|YP_001842925.1| D-alanyl-D-alanine [Lactobacillus fermentum IFO 3956]
gi|183225929|dbj|BAG26445.1| D-alanyl-D-alanine [Lactobacillus fermentum IFO 3956]
Length = 411
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 56/339 (16%), Positives = 118/339 (34%), Gaps = 29/339 (8%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
T +D TG ++ + AS++K++T V+ +K K T + ++K
Sbjct: 35 TVNAKAAIAIDATTGQILYAKNANTKLAIASISKIITVGVIEQEIKAGKLSWNTKVKVTK 94
Query: 85 NA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
SN T G + T+ + ++KSA+ A+ ++ + + FV+ M
Sbjct: 95 EEAKLSENTEYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQA 154
Query: 141 TSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMH 186
K G++ N G+ + TA D+A ++ + ++P ++
Sbjct: 155 FVKKAGVTDAKLYNQVGLTNSQMGSYGLKGVAKNAENEMTATDVAKIAQYLIKNYPSLLN 214
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLG------ADGMKTGFTCASGFNIVASAIQGDQSLI 240
++ I G N + DG+KTG + +G V++ +I
Sbjct: 215 ITKLTSTTIDGTTVTTINKMLAGQSDAPTQVKIDGLKTGTSDKAGACFVSTGTYQGHRII 274
Query: 241 AVILGAL-DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
V+L A + R +A+L + T + ++ ++
Sbjct: 275 TVVLHATGGGDERFTQTANLYHLIANEYTAYTVQPSVAVTVPNGKVTTTTLTTQGKITLW 334
Query: 300 QKEII----NYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+K+ + K A +K ++
Sbjct: 335 KKDGTLLSPSLAINSKAADKNGKLTAPVKKGQVVGELTY 373
>gi|76789288|ref|YP_328374.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
A/HAR-13]
gi|237802980|ref|YP_002888174.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
B/Jali20/OT]
gi|237804902|ref|YP_002889056.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
B/TZ1A828/OT]
gi|76167818|gb|AAX50826.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
A/HAR-13]
gi|231273202|emb|CAX10115.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231274214|emb|CAX11008.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
B/Jali20/OT]
Length = 437
Score = 122 bits (305), Expect = 7e-26, Method: Composition-based stats.
Identities = 75/375 (20%), Positives = 135/375 (36%), Gaps = 48/375 (12%)
Query: 1 MRQFLV----IIAMAMLSNIFPFLSIAETNKLPY--YTLLDTNTGHVIAENYPDHPWNPA 54
MR F + I +A FP + T ++ ++G ++ E DH PA
Sbjct: 1 MRTFFLLCRFFICLAPFFLSFPLYADPHTVLTKGIVAAVVHADSGAILKEKNLDHKIFPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTP-----------------ITISKNASEYPPSNSTFK 97
S+TK+ TA ++ + T + E K
Sbjct: 61 SMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLK 120
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
++ + L++ SAND A +A++ C++ F++ +N + LG THF + HG
Sbjct: 121 VKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHG 180
Query: 158 VVQHGHYTTARDMAILSWRIKTDF-----PQYMHYFQIKGLEIKGKKYPNTNW-----AV 207
+ HYTTARD++++ + + Y + +TN +
Sbjct: 181 LHHPDHYTTARDLSLIMKEALKEPLFRQVIRTASYTMEATNLSPERVLSSTNKLLSSSST 240
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLLSMGFYN 266
+ G KTG T ++G NI+ +A + ++S+I V G + + +L F
Sbjct: 241 YFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLYQDAIALCEDLFNE 300
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI----- 321
+ R + + VP V + I Y+ E + +
Sbjct: 301 QLLRCFLIPPASHYP-------VPTRFGTVTAPVAQGIYYDFYPSEGDPLLTLSLEPNKI 353
Query: 322 --DFEKITLLKNKIT 334
K LL + I
Sbjct: 354 SFPIRKGDLLGHWIL 368
>gi|296395141|ref|YP_003660025.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus
rotundus DSM 44985]
gi|296182288|gb|ADG99194.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus
rotundus DSM 44985]
Length = 304
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 52/256 (20%), Positives = 93/256 (36%), Gaps = 15/256 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ L D ++G ++A P PAS K + A V L
Sbjct: 46 AGSPEVPDGPAEAWLLADMDSGEILAAKNPYAYHAPASTIKTLLALTVIDE-----VPLD 100
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ + +++ ++ L L++ S ND A +AE+L V
Sbjct: 101 STVLANRSDLAECSCVGVTTGRE-YSVRQLLDGLLLVSGNDAANTLAEAL-GGFDAAVAK 158
Query: 138 MNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK---G 192
MN + +G S T + G+ +TT RD+A++ + +
Sbjct: 159 MNEKAAEIGASDTRTGSPSGLDWPGMEMHTTPRDLAVIFREALSRPVFAEITAEPTALFP 218
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL---GALDR 249
+ + N + + + GA G KTGFT A+ V +A + + L+ ++ A
Sbjct: 219 GDSGEDEIRNQDELLTLYPGALGGKTGFTNAARKTFVGAAERDGRRLVVSMMHGLNAPGG 278
Query: 250 NTRNKVSASLLSMGFY 265
T + +LL GF
Sbjct: 279 PTYWDQAQALLDWGFA 294
>gi|121610552|ref|YP_998359.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
[Verminephrobacter eiseniae EF01-2]
gi|121555192|gb|ABM59341.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Verminephrobacter eiseniae EF01-2]
Length = 372
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 53/247 (21%), Positives = 95/247 (38%), Gaps = 8/247 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+S + ++D +T V+ ASLTKLMT ++ +
Sbjct: 114 VSDPLALRSSVALVVDQDTNEVLLSKNDHAVLPIASLTKLMTGLLISQAK----LPMDEL 169
Query: 80 ITISKNA-SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+TI+++ S S G+T+T L L ++ S N A A+ + FV M
Sbjct: 170 LTITQDDVDMEKGSRSRLTVGTTLTRGAMLHLALMASENRAAHALGRTYPGGLAAFVAQM 229
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG++ TH+ G+ + +++ + + +E+ K
Sbjct: 230 NAQARRLGMTDTHYAEPTGLSSRNQSSARDLATLVNVTHADPLLRELSTSPDYEVEVGRK 289
Query: 199 K--YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y NTN V G KTG+ +G +V A + LI V L + + +R
Sbjct: 290 TLQYNNTNRLVKNPTWDIGLQKTGYISEAGRCLVMQAQVAGRKLIMVFLDSAGKFSRIAD 349
Query: 256 SASLLSM 262
+ +
Sbjct: 350 AERVRHW 356
>gi|239636745|ref|ZP_04677747.1| penicillin-binding protein 4 [Staphylococcus warneri L37603]
gi|239598100|gb|EEQ80595.1| penicillin-binding protein 4 [Staphylococcus warneri L37603]
Length = 429
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 77/353 (21%), Positives = 133/353 (37%), Gaps = 51/353 (14%)
Query: 1 MRQFL-VIIAMAMLSNIFPFLSIAE--------------------TNKLPYYTLLDTNTG 39
M++ +II M + NI + AE + + + G
Sbjct: 1 MKRIFKLIITMFFVLNIITPFANAENGDVTPVQVAIDNGYSKVTEAYQPESAINVSQD-G 59
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNST 95
++ E D W PAS+TKLMT Y+ +K+KK L + I+ + SN+
Sbjct: 60 QILYEYNKDKVWYPASMTKLMTMYLTLEAVKDKKLSLNDEVKITDREYQMSTLPELSNTK 119
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
G T+ + L++ + S+N A+ + E + F MN +K LG+ TH++N
Sbjct: 120 LYPGQKWTISDLLQITVSNSSNAAALILGEQVSGNVNDFTDLMNKKAKELGMKDTHYVNP 179
Query: 156 HGVVQ--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
G TTARD AIL + + P+ +H+ + G Y
Sbjct: 180 TGAENARLKSFAPSKYKKTENTTTTARDYAILDQHVINETPKILHFTKQLAPTTHGVTYY 239
Query: 202 NTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNT 251
N + + G DG+KTG + + +N + + + VILGA D
Sbjct: 240 TFNHSLDGADMSLPGTDGLKTGSSDTADYNHTITTKRNGFRINQVILGAGDYKHIGGEKQ 299
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
RN + +L+ F K ++ K ++ + + +
Sbjct: 300 RNMMGNALMERSFSQYKYEKILSKG-KHQINGKTYYVEQDLYDVLPKDFTKKD 351
>gi|282934688|ref|ZP_06339931.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
208-1]
gi|281301263|gb|EFA93564.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
208-1]
Length = 395
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 61/372 (16%), Positives = 126/372 (33%), Gaps = 42/372 (11%)
Query: 1 MRQF-----------LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
MR+F L II + L+ + + + ++D TG ++ +
Sbjct: 1 MRRFRDKLKIAWLVALCIIGIINLTFFNVVKADEKPVNVKAAFMMDEKTGQILYQKNATR 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ ASLTK++T V+ + + K I ISK+ ++ ++
Sbjct: 61 KYAVASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWRFSNVPLIYNERYTVR 120
Query: 110 LLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------- 158
LI A E + + F M +K G+ N G+
Sbjct: 121 SLIESMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGN 180
Query: 159 -------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ +A+DMA++S + +P+ ++ + K K + ++
Sbjct: 181 LKLPKIDDNQENQFSAKDMALISKYLIDKYPEVLNITKTKYANFKISQDNEIKMENIIYM 240
Query: 212 -----------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-RNKVSASL 259
DG+KTG T A+G+ V + ++ +I V+L + + + ++
Sbjct: 241 LEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVPGEYSNQFIQTNNM 300
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ F K IN Q ++ +++ + + S
Sbjct: 301 IDTVFDKYQLVK-INKNNLPKKYQKITITSKKQKKKISVVPETDSALWLAKDQKLANLSP 359
Query: 320 FIDFEKITLLKN 331
++ +K LK
Sbjct: 360 KLEVKKQNKLKK 371
>gi|312961792|ref|ZP_07776290.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas fluorescens WH6]
gi|311284051|gb|EFQ62634.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas fluorescens WH6]
Length = 307
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 59/277 (21%), Positives = 102/277 (36%), Gaps = 18/277 (6%)
Query: 1 MRQFLVIIAMAMLSN----------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
M+ L I+++ + P L+D T VI + PD
Sbjct: 1 MKIRLSIVSLFFAFTGTFAHAAESTLAPRDPSKLQIASGSAMLVDLQTNKVIYASNPDVV 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
AS++KLMT +V + + IT + S K GS M L +
Sbjct: 61 VPIASVSKLMTGLIVLEAKQNMDEYIDINITDTPE---MKGVFSRVKIGSQMPRKEMLLI 117
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
++ S N A ++A F+ MN +K LG+++TH++ G+ H T
Sbjct: 118 ALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTSTHYVEPTGLSIHNVSTARDLS 177
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFTCASG 225
+L++ K + + K + + Y + KTGFT +G
Sbjct: 178 KLLAYARKFPMLSQLSTTKEKTVSFRKPNYTLGFSNTDHLINRANWDIKLTKTGFTNQAG 237
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+V G++ + VIL A + T ++ + S
Sbjct: 238 HCLVLVTSMGNRPVSLVILDAFGKFTHFADASRIRSW 274
>gi|301024377|ref|ZP_07188066.1| beta-lactamase [Escherichia coli MS 196-1]
gi|299880474|gb|EFI88685.1| beta-lactamase [Escherichia coli MS 196-1]
Length = 291
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 10/245 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI N+PD AS++KLMTA VV L I+ +
Sbjct: 23 PEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQT 82
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + S ++ + L L ++ S N A ++A K F++ MN +K
Sbjct: 83 PE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAK 139
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGK 198
+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 140 SLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTL 198
Query: 199 KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN V KTGFT A+G +V + ++ + V++ A + T ++
Sbjct: 199 PFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADAS 258
Query: 258 SLLSM 262
L +
Sbjct: 259 RLRTW 263
>gi|297587950|ref|ZP_06946594.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
ATCC 53516]
gi|297574639|gb|EFH93359.1| possible serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
ATCC 53516]
Length = 394
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 78/352 (22%), Positives = 155/352 (44%), Gaps = 20/352 (5%)
Query: 1 MR--QFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+ + ++ + + + P LS A NK+ Y ++ + + + P+
Sbjct: 1 MKSIKKIIPLMLILAIVFQPALSKADSKLGFENKVNSYYTIEQDYSQELLNYNENKPYAI 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
ASLTK+MT +V + K L I I ++ S KKG +T+++ ++ +++
Sbjct: 61 ASLTKIMTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGEEVTVNDLIRGMMI 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMA 171
S ND A +A + KFV+ MN + L L + F +A G + +A+D+A
Sbjct: 121 VSGNDAADELAVKSEGSVAKFVERMNKKAAELELESAKFYSASGYPENDKENMMSAKDLA 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNWAVGTFLGADGMKTGFTCASGFNIV 229
L+ ++PQ ++Y + + L + +KY T +G G DG KTG T +G+ ++
Sbjct: 181 KLTTYTINNYPQVLNYTKTQKLSMPSRKYEGVTTVPFLGKIEGVDGFKTGTTEKAGYCLI 240
Query: 230 ASA----IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285
+ + +++V++GA + RN +L + +N + +
Sbjct: 241 TTMSLKPNNPNNKVVSVLMGAPTKYDRNTYQKIILEYVRNSFEPINILNS--EKPIETKS 298
Query: 286 SNEVPNISEEVCTTQKEIINYNTQM---KEAKDKESHFIDFEKITLLKNKIT 334
N V + + E+ T+ I YNT+ ++ K+ +K ++ +
Sbjct: 299 VNSVVDKNVEIYPTEDVSILYNTKTGLQQKVDIKKDLKAPLKKGQIVGKVVI 350
>gi|295090182|emb|CBK76289.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
saccharolyticum K10]
Length = 352
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 11/239 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
E PY L+D ++G V+ E PASLTK+MTA + ++ + ++ P I
Sbjct: 89 ENLYSPYAILVDLDSGTVLKEKNSTDRIYPASLTKIMTAILAIENTEDLEEIVQLPDEIF 148
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + F+ G + L + L +++ S + +A A+ + +E++FV MN+ ++
Sbjct: 149 PPLYAQNASMAGFQPGEEVRLKDLLYGVLIPSGAECCLAFADRISGSEEEFVSLMNDKAQ 208
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG----------- 192
LG+ THF N+ G+ HY+T D++IL + + +
Sbjct: 209 ELGMKNTHFTNSTGLHDPEHYSTVEDISILLQYALKNEYFRDVFTSSRYSTLPSEQHPEG 268
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + T G KTG+T +G + + A + I V A +
Sbjct: 269 FTFHSTMFKYMDSTEVTGGEILGGKTGYTEEAGLCLASLAQVNGKEYILVTAKANGTHQ 327
>gi|229591365|ref|YP_002873484.1| D-alanyl-D-alanine endopeptidase [Pseudomonas fluorescens SBW25]
gi|229363231|emb|CAY50317.1| penicillin-binding protein 7 precursor [Pseudomonas fluorescens
SBW25]
Length = 307
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 58/277 (20%), Positives = 101/277 (36%), Gaps = 18/277 (6%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHP 50
M+ L II++ + A + L+D T VI + PD
Sbjct: 1 MKIRLSIISLFFAFTGNFTHAAETTQAPRDTSKLQIASGSAMLVDLQTNKVIYSSNPDVV 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
AS++KLMT +V + + IT + S K GS M L +
Sbjct: 61 VPIASVSKLMTGLIVLEAKQNMDEYIDINITDTPE---MKGVFSRVKIGSQMPRKEMLLI 117
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
++ S N A ++A F+ MN +K LG+++TH++ G+ H T
Sbjct: 118 ALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTSTHYVEPTGLSIHNVSTARDLS 177
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFTCASG 225
+L+ + + K + + Y + KTGFT +G
Sbjct: 178 KLLAAARHYPLLSQLSTTKEKTVSFRKPNYTLGFSNTDHLINRANWDIKLTKTGFTNQAG 237
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+V G++ + VIL A + T ++ + +
Sbjct: 238 HCLVLVTSMGNRPVSLVILDAFGKFTHFADASRIRNW 274
>gi|161502683|ref|YP_001569795.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864030|gb|ABX20653.1| hypothetical protein SARI_00730 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 315
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 65/280 (23%), Positives = 105/280 (37%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F L PF A ++D NT VI N+PD
Sbjct: 1 MLKFRASFLSLALMLAVPFAPQAVAKTAATTAASQPEIASGSAMIVDLNTHKVIYSNHPD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TKLMTA VV +L I+ + S + S ++ N L
Sbjct: 61 LVRPIASITKLMTAMVVLDARLPLDEILKVDISQTPE---MKGVYSRVRLNSEISRKNML 117
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A F++ MN +K LG++ T F+ G+ + +TAR
Sbjct: 118 LLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGL-SIHNVSTAR 176
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 177 DLTKLLIATKQYPLIGQLSITREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTN 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 237 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 276
>gi|254557717|ref|YP_003064134.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
JDM1]
gi|254046644|gb|ACT63437.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
JDM1]
Length = 444
Score = 122 bits (305), Expect = 8e-26, Method: Composition-based stats.
Identities = 60/377 (15%), Positives = 138/377 (36%), Gaps = 45/377 (11%)
Query: 1 MRQFLVIIAMAMLSN----------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
+++ ++ + A+ + + + + +D +TG ++ + P
Sbjct: 7 LKKVMIALVAAVTFSTAGLGIAGADLQAQAASTPSISAKAAIAVDASTGQILYDKNSSKP 66
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
AS+TK+++ Y+V + E K I++SK ++ + T +++
Sbjct: 67 MAIASMTKMLSTYLVLKAIHEDKLSWNQKISVSKAVAKMSQNTEYANVPLLSTKTYSVRQ 126
Query: 111 LIV----KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----- 161
L SAN A+ +++ T KFV M T+K+ G++ +NA G+
Sbjct: 127 LYNATEIYSANAAITALGDAVAGTPHKFVSLMRKTAKSWGITDATIINASGLTNKEVGST 186
Query: 162 ----------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA 206
+ +A+D+A ++ ++ +D+P+ + I + K N N+
Sbjct: 187 IGYSNVAASAENEMSAQDVATVAQKLLSDYPEVLKTSSIAHAWFEKGTSSATKMDNRNYM 246
Query: 207 ------VGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGA----LDRNTRNKV 255
+ L DG+KTG + +G + +I V++ A R
Sbjct: 247 LKGLVKHYSALPVDGLKTGTSTKAGNAFTGTVKFSNGNRIITVVMHAGAANDSGTERFTQ 306
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
+A ++S ++N T + + + +++ ++ + Y +A
Sbjct: 307 TAEIMSYVYHNYTTTTINKNGKINGVKAVDVQDGKSLTSQLVSNSGATKIYLPTGTDASA 366
Query: 316 KESHFIDFEKITLLKNK 332
+ T
Sbjct: 367 VTGKVSLKKSATTDGKL 383
>gi|260221036|emb|CBA29200.1| D-alanyl-D-alanine endopeptidase [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 310
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 10/245 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
A K ++D +T V+ + AS+TKLMT VV + + I I
Sbjct: 44 ALDLKSSVAFVVDQDTKEVLFSKNENAVLPIASITKLMTGVVVSEA----RLSMDETIEI 99
Query: 83 SK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
++ + S+S + G+ ++ L L ++ S N A A+ + + FV MN
Sbjct: 100 TQADVDTEKGSSSRLRVGTELSRGELLHLALMASENRAAHALGRTFPGGLQHFVGLMNQK 159
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE---IKGK 198
++ LG++ T ++ G+ + ++A+D+A L +D +
Sbjct: 160 ARILGMTDTQYVEPTGL-NSRNQSSAKDLATLVNYAYSDATLRELSTSTGYQVEVGNRTL 218
Query: 199 KYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+Y NTN V G KTG+ +G +V A + LI V L + + TR +
Sbjct: 219 QYNNTNRLVKNPAWEIGLQKTGYITEAGQCLVMQAKIAGRKLIMVFLDSAGKLTRIADAE 278
Query: 258 SLLSM 262
+
Sbjct: 279 RVRKW 283
>gi|302520562|ref|ZP_07272904.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
gi|302429457|gb|EFL01273.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
Length = 308
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 59/291 (20%), Positives = 115/291 (39%), Gaps = 19/291 (6%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + A + LLDT++G + D AS TK+MTA VV
Sbjct: 21 LVAPLVGTAQAASAPSVSAKGAFLLDTSSGKTLYSKAADTKRQMASTTKVMTATVVLDTK 80
Query: 70 KEKKAMLTTPITISKNASEYPPSNS-TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
T ++ +++ + G +T+ L ++ S D A A+A++
Sbjct: 81 GLNLDKKITIKQAYRDYVVKKGASTSDLRTGDKVTVRQLLYATLLPSGCDAAYALADTFG 140
Query: 129 KTEKK------FVQHMNNTSKNLGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKT-- 179
+ F+ MN +K+L + T + + G+ +YTT RD ++L+
Sbjct: 141 TGKTASARTANFISKMNAKAKSLKMKNTSYDSFDGIPTKSKNYTTPRDASLLARHALKSS 200
Query: 180 ------DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + + NTN +G++ GA G+KTG SG +V +A
Sbjct: 201 TFRTVVKSKSTKQKATASNGKSRTYTWYNTNKLLGSYKGAIGIKTGTASGSGPCLVFAAT 260
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
+ +++ VIL + R + +A ++ F + + + + Q++
Sbjct: 261 RNGKTVAGVILN---DSKRFEDAAKIMDYAFKSNSAKTMKLQALPKGAQKD 308
>gi|108798929|ref|YP_639126.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
sp. MCS]
gi|119868044|ref|YP_937996.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
sp. KMS]
gi|108769348|gb|ABG08070.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
sp. MCS]
gi|119694133|gb|ABL91206.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
sp. KMS]
Length = 264
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 58/259 (22%), Positives = 97/259 (37%), Gaps = 12/259 (4%)
Query: 11 AMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
A L+ P ++A + L D ++G V+A P P PAS K++ A VV
Sbjct: 14 AALAQPQPAGAVALPEGPAQAWLLADLDSGRVLASRNPYEPHAPASTIKVLLAMVVLDH- 72
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+++ +E S G T L L++ S ND A +A+ +
Sbjct: 73 ----LSPDNFARANRSHTEVECSCVGLTPGQPYTTRQLLSALLMVSGNDAANMLAD-MLG 127
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQYMHY 187
++ V MN + +G +T + G+ TT D+A++ +P
Sbjct: 128 GQRAAVAAMNRKAALVGAKSTRASSPSGLDGPGWESITTPHDLAVMLRAAL-KYPLIAQI 186
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ GK N N + + G KTGFT + V +A +G++ L V +
Sbjct: 187 MRSPTAPFPGKTLTNQNELLSRYPGDIAGKTGFTNLARKTYVGAAQRGNRRLAVVQMYGT 246
Query: 248 DRNTRNKVSASLLSMGFYN 266
+ L GF
Sbjct: 247 G--DLYGQAIGLFDYGFSQ 263
>gi|120597728|ref|YP_962302.1| D-alanyl-D-alanine endopeptidase [Shewanella sp. W3-18-1]
gi|146294135|ref|YP_001184559.1| D-alanyl-D-alanine endopeptidase [Shewanella putrefaciens CN-32]
gi|120557821|gb|ABM23748.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Shewanella sp. W3-18-1]
gi|145565825|gb|ABP76760.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
putrefaciens CN-32]
gi|319427478|gb|ADV55552.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
putrefaciens 200]
Length = 322
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 58/276 (21%), Positives = 98/276 (35%), Gaps = 12/276 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D T V+ + P+ AS+TKLMTA V L I+ +
Sbjct: 51 QEVAANSALVVDLKTNEVLYSSNPNAVMPIASVTKLMTAMVTLDAKLPMDQKLAVNISDT 110
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
K S + GS +T L L ++ S N A ++A K F++ MN +K
Sbjct: 111 KE---MRGVYSRVRIGSEITRKEMLLLTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAK 167
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--- 200
LG+ T ++ G+ + + + +L K + + K + KY
Sbjct: 168 ALGMKNTRYVEPTGLSHKNVSSASDLIVLLKASEKYPMLGELSATEKKTVTFGKPKYSLD 227
Query: 201 -PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
NTN V KTGFT A+G +V + + V+L A + T +
Sbjct: 228 FRNTNRLVYKDNWNIHLTKTGFTNAAGHCLVMRTEMAKRQVAFVVLDAYGKYTHLADANR 287
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
L + K + + +
Sbjct: 288 LRNW----LETGKVTPIPTEAKQYKKQRSTQQIAKV 319
>gi|237732182|ref|ZP_04562663.1| D-alanyl-D-alanine endopeptidase [Citrobacter sp. 30_2]
gi|226907721|gb|EEH93639.1| D-alanyl-D-alanine endopeptidase [Citrobacter sp. 30_2]
Length = 314
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 10/245 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI N+PD AS+TKLMTA VV L I+ +
Sbjct: 35 PEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLPLDEKLKVDISQT 94
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + S ++ + L L ++ S N A ++A F++ MN +K
Sbjct: 95 PE---MKGIYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYNAFIKAMNAKAK 151
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGK 198
LG++ T F+ G+ + +TARD+ L + +
Sbjct: 152 ALGMTQTRFVEPTGL-SIHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFANPAYTL 210
Query: 199 KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN V KTGFT A+G +V + ++ + V++ A + T ++
Sbjct: 211 PFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADAS 270
Query: 258 SLLSM 262
L +
Sbjct: 271 RLRTW 275
>gi|213964906|ref|ZP_03393105.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium amycolatum
SK46]
gi|213952442|gb|EEB63825.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium amycolatum
SK46]
Length = 325
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 67/292 (22%), Positives = 114/292 (39%), Gaps = 17/292 (5%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ +T+ D +G V+A P + PAS+ K++ A L TP+
Sbjct: 15 PKDLSASAWTVFDLKSGDVLAAKDPHGRYRPASIIKVLLAMEALE-----DLKLDTPVKA 69
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ + S + +++ L L++ S ND A+A L K + +N +
Sbjct: 70 TFEDANMEGSRVGIVEDVNYSVETLLTGLLLNSGNDTGHALAREL-GGMDKTTEKVNALA 128
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-------HYFQIKGLEI 195
K LG + T +N G+ G T+A DM++ + K LE+
Sbjct: 129 KKLGATDTRVVNPTGLDAPGQMTSAYDMSLFFQHAFNNETYRKLSATRLATIPGDKALEV 188
Query: 196 KGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG--ALDRNTR 252
+ N N + + GA G KTGFT + A + + L V+L D
Sbjct: 189 DDFEIANDNQLIAQDYPGALGGKTGFTDDARHTFAGVAERDGRRLGVVVLDVTVEDSPRA 248
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
+ +ASLL GF + + + NL+ ++P+I E+ T I
Sbjct: 249 WQQAASLLDAGF-KAPEGSSVGVLEASTKDDNLAEKLPDILEDESTGTGLKI 299
>gi|194334807|ref|YP_002016667.1| Serine-type D-Ala-D-Ala carboxypeptidase [Prosthecochloris
aestuarii DSM 271]
gi|194312625|gb|ACF47020.1| Serine-type D-Ala-D-Ala carboxypeptidase [Prosthecochloris
aestuarii DSM 271]
Length = 317
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 78/279 (27%), Positives = 122/279 (43%), Gaps = 25/279 (8%)
Query: 5 LVIIAMAMLSNIFPFLSIAET----------NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
+ + ++ FP SIAE + Y L D V+ E P PA
Sbjct: 18 MTAVFACLMFFCFPVPSIAEPHAKDSLKVEPLDIASYILKDIGRSTVLLEKDPGTRHEPA 77
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTK++T + + L +TI A++ P+ + F G + L + +K +VK
Sbjct: 78 SLTKILTCIIAIESAR-----LNEFVTIPLEATQVEPTKAGFLPGEKIRLLDLVKAAMVK 132
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---GHYTTARDMA 171
S+ND A AIA L + + F MN + LGLS + F N G +H GHY+TA DM
Sbjct: 133 SSNDAAFAIAIHLGGSVQGFAAMMNAKAAELGLSHSCFTNPAGFDRHQYVGHYSTAGDML 192
Query: 172 ILSWRIKTDFPQYM-----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L+ + + K + +N + + A G+KTG+T +G
Sbjct: 193 RLTEYAIGNQIFNYIAGLDEVSITEKRSGKIYRLKTSNKLLHRYPYAVGIKTGYTFRAGK 252
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
++A A +GD+ ++ V+L A R R V+ L F
Sbjct: 253 CLIARAKKGDRDVVLVMLNA--RLDRWSVAEELFEKAFS 289
>gi|295676949|ref|YP_003605473.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. CCGE1002]
gi|295436792|gb|ADG15962.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. CCGE1002]
Length = 404
Score = 122 bits (305), Expect = 9e-26, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 6/246 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D N+G + + AS+TKLMTA VV +
Sbjct: 142 TPDALMLRSSVAYVIDQNSGETLFDKNSRAVVPIASITKLMTAMVVLDSKEPMT---DQI 198
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 199 EVTDEDRDYEKNTGSRLAVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMN 258
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+K LG++ THF N G+ + + +++ + + + +
Sbjct: 259 AKAKQLGMNDTHFENPTGLTSMNVSSARDLVKMVNAAYQYPLIRKFSTDHSYEVYTGKRT 318
Query: 200 --YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
Y +TN V G KTGF +G +V A + +I V+L + + +R +
Sbjct: 319 LAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRPMILVLLDSSGKYSRFADA 378
Query: 257 ASLLSM 262
L +
Sbjct: 379 TRLRTW 384
>gi|295098157|emb|CBK87247.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 307
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 12/246 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI ++PD AS+TK+MTA VV + L + +
Sbjct: 37 PQIASGSAMIVDLNTNKVIYASHPDLVRPIASITKVMTAMVVLDA----RLPLDEKLKVD 92
Query: 84 -KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ E S + S ++ N L L ++ S N A ++A F++ MN +
Sbjct: 93 ISHTPEMKGIYSRVRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKA 152
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKG 197
K LG+ THF+ G+ + +TARD+ L + +
Sbjct: 153 KALGMKNTHFVEPTGL-SIHNVSTARDLTKLLIASKQYPLIGQLSTTREEMATFSNPAYT 211
Query: 198 KKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ NTN V KTGFT A+G +V + + + V++ A + T +
Sbjct: 212 LPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDAFGKYTHFADA 271
Query: 257 ASLLSM 262
+ L +
Sbjct: 272 SRLRTW 277
>gi|193070497|ref|ZP_03051437.1| penicillin-binding protein 7 [Escherichia coli E110019]
gi|192956191|gb|EDV86654.1| penicillin-binding protein 7 [Escherichia coli E110019]
gi|315615372|gb|EFU96004.1| D-alanyl-D-alanine endopeptidase [Escherichia coli 3431]
gi|332765942|gb|EGJ96152.1| penicillin-binding protein 7 [Shigella flexneri 2930-71]
gi|333016619|gb|EGK35948.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-304]
Length = 297
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 10/245 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI N+PD AS++KLMTA VV L I+ +
Sbjct: 23 PEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQT 82
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + S ++ + L L ++ S N A ++A K F++ MN +K
Sbjct: 83 PE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAK 139
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGK 198
+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 140 SLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTL 198
Query: 199 KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN V KTGFT A+G +V + ++ + V++ A + T ++
Sbjct: 199 PFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADAS 258
Query: 258 SLLSM 262
L +
Sbjct: 259 RLRTW 263
>gi|253701878|ref|YP_003023067.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp.
M21]
gi|251776728|gb|ACT19309.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Geobacter sp.
M21]
Length = 276
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 69/256 (26%), Positives = 113/256 (44%), Gaps = 14/256 (5%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + + + P L+ GH+ E PASLTK+MTA +V
Sbjct: 5 ILFAVAYYTDAASSPFAHPPSAYLI-QVNGHIYKERNAHIRRPPASLTKIMTALIVMERC 63
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K L + +S+ A+ S ++G +T+ + L ++ SAND A+A+ C
Sbjct: 64 K-----LDEVVVVSRGAARETGSRIGLRRGEKLTVRDLLAATLMASANDACRALADHACG 118
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-----Y 184
++ FV MN ++ L L T F NA G G YTTA D+A+L+ +
Sbjct: 119 NQRDFVVQMNARARALQLPNTRFTNACGHDSAGLYTTAHDLALLTEKAMQKPLFAELVAR 178
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ N N +G + GA G+KTG T +G +VA A + ++ ++ VI+
Sbjct: 179 KEMRIRTLNSKRSYYLRNKNRLIGRYPGAIGVKTGTTPNAGQCLVAIAEREERKVLLVIM 238
Query: 245 GALDRNTRNKVSASLL 260
A R V+ ++L
Sbjct: 239 HA---RNRWWVAPAML 251
>gi|288934371|ref|YP_003438430.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Klebsiella
variicola At-22]
gi|288889100|gb|ADC57418.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Klebsiella
variicola At-22]
Length = 316
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/258 (21%), Positives = 98/258 (37%), Gaps = 10/258 (3%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + ++D T +I + PD AS+TK+MTA VV
Sbjct: 24 ALAKTSAAVAASQPDIASGSAMIVDLATKKIIYASQPDLVRPMASITKVMTAMVVLDAHL 83
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
MLT I+ + E S + S ++ L L ++ S N A ++A
Sbjct: 84 PMDEMLTVDIS---HTPEMKGIYSRVRLNSQISRRTMLLLALMSSENRAAASLAHHYPGG 140
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYM 185
F++ MN ++ LG++ T ++ G+ + +TARD+ L + +
Sbjct: 141 YDAFIRAMNAKAQALGMTHTRYVEPTGL-SVHNVSTARDLTKLLIASEQYPLIGQLSTTK 199
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ NTN V KTGFT A+G ++ + + V++
Sbjct: 200 EETATFAHPAYSLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLIMRTVINQHPVALVVM 259
Query: 245 GALDRNTRNKVSASLLSM 262
A + T ++ L +
Sbjct: 260 DAFGKYTHFADASRLRTW 277
>gi|313890335|ref|ZP_07823967.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
pseudoporcinus SPIN 20026]
gi|313121321|gb|EFR44428.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
pseudoporcinus SPIN 20026]
Length = 412
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 60/367 (16%), Positives = 133/367 (36%), Gaps = 32/367 (8%)
Query: 1 MRQFLVIIA-MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ + +I + L+ + +TG ++ E ASL+K+
Sbjct: 1 MKKLVFLILPLLFCFLPKTILADDYKLPAKSGIAFEVSTGKILYEKNAKKTLPIASLSKI 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+T Y+V+ ++ TP+ IS ++ T++ L ++V +A
Sbjct: 61 LTTYLVYKEVQSGNLSWDTPVKISNYPYELTTNYSISNVPLDARQYTVEELLTAMLVTNA 120
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHG 162
N A+A+AE + TE FV M + + +NA G+
Sbjct: 121 NSPAIALAEKIAGTEPLFVDKMKKQLQEWKIHKADLVNASGLSNEQLGNHIYPNSQKDAE 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKT 218
+ +A D+AI++ + D+PQ + + +G + + N+ + GA+G+
Sbjct: 181 NKMSALDLAIVTRHLLLDYPQVLELTKKPAATFRGDQIFSYNFLLEGMPNHRKGANGLFV 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKIN 274
F+ +G +++ S+ + S++++I+ + +LL +
Sbjct: 241 AFSENNGASLITSSTENKMSVVSIIINTEKSKDDKLAHFTTANTLLDNIAQKYEPVTLLE 300
Query: 275 YI-----IKDFYQQNLSNEVPNISEE-VCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + IS++ + QK T + ++ ++
Sbjct: 301 KGQHLKNKDFPVTDSPMKHISLISDKTLTIIQKRGTTTTTDLVIRPLQKEFRAPIKQNQK 360
Query: 329 LKNKITK 335
L K
Sbjct: 361 LATASYK 367
>gi|167400236|ref|ZP_02305749.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
[Yersinia pestis biovar Antiqua str. UG05-0454]
gi|167050185|gb|EDR61593.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
[Yersinia pestis biovar Antiqua str. UG05-0454]
Length = 231
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 6/191 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +
Sbjct: 32 PAAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLV 91
Query: 81 TISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
T+ K+A K G + + + K ++++S ND ++A+A+ + ++ F
Sbjct: 92 TVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSF 151
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K
Sbjct: 152 VGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFT 211
Query: 195 IKGKKYPNTNW 205
+ N N
Sbjct: 212 FNKIRQTNRNR 222
>gi|77459922|ref|YP_349429.1| D-alanyl-D-alanine endopeptidase [Pseudomonas fluorescens Pf0-1]
gi|77383925|gb|ABA75438.1| penicillin-binding protein 7 precursor [Pseudomonas fluorescens
Pf0-1]
Length = 312
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 61/281 (21%), Positives = 105/281 (37%), Gaps = 22/281 (7%)
Query: 1 MRQFLVIIAMAMLSN---IFPFLSIAETNKLP-----------YYTLLDTNTGHVIAENY 46
M L I+++ + + P ++ AET P L+D T VI +
Sbjct: 1 MNIRLSILSLVFAFSGTLLTPTVNAAETTAAPRDASQLKIASGSALLMDLQTNKVIYSSN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
PD AS++KLMT VV + + I+ + E S K S +
Sbjct: 61 PDVVVPIASVSKLMTGLVVVEAHQNMDEWIDVDIS---HTPEMKGVFSRVKLRSELPRRE 117
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
L + ++ S N A ++A F+ MN +K LG+++THF+ G+ + T
Sbjct: 118 MLLIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTSTHFVEPTGLSERNVSTA 177
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFT 221
+L K + + K + + Y + KTGFT
Sbjct: 178 RDLSKLLVAAHKQPLLIELTTTKEKTVSFRKPNYTLGFRNTDHLVNKADWDIRITKTGFT 237
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V ++ + VIL A + T ++ + S
Sbjct: 238 NPAGHCLVLVTRMANRPVALVILDAFGKYTHFADASRIRSW 278
>gi|294629041|ref|ZP_06707601.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
gi|292832374|gb|EFF90723.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
Length = 425
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 45/276 (16%), Positives = 90/276 (32%), Gaps = 20/276 (7%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFLKEKKAM 75
++ + L D +G V+A PAS K++ T F
Sbjct: 41 TSALPARLTAQAWLLADWESGEVLAAYRAHERLAPASTLKMLFADTVLAKFPRTDRHTVT 100
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
I + +S T + L+ A + K V
Sbjct: 101 AADLADIPEGSSLVGIQPGTTYTVEQLWQGVFLRSGNDAVHVLAA------MNGGIAKTV 154
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY-------- 187
M + +L TH ++ G G ++A D+ + + + +
Sbjct: 155 AEMQARAADLQALDTHVVSPDGYDHPGQVSSAYDLTLFARHGLKNADFRGYCGTRAADFP 214
Query: 188 --FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ + +W + T+ G G+K G+T +G +A++G ++L+ ++
Sbjct: 215 AGGKKTFQIQNTDRLLTGSWGLKTYDGMIGVKNGYTSHAGNTFTGAAVRGGRTLLVTVMH 274
Query: 246 -ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
A N + SA+LL GF + + ++
Sbjct: 275 PAAGANAVYEESAALLDWGFAQGGAARAVGVLVDPL 310
>gi|253798001|ref|YP_003031002.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis KZN 1435]
gi|289553300|ref|ZP_06442510.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis KZN 605]
gi|297635529|ref|ZP_06953309.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis KZN 4207]
gi|297732528|ref|ZP_06961646.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis KZN R506]
gi|313659860|ref|ZP_07816740.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis KZN V2475]
gi|253319504|gb|ACT24107.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis KZN 1435]
gi|289437932|gb|EFD20425.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis KZN 605]
gi|328457775|gb|AEB03198.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis KZN 4207]
Length = 291
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 51/250 (20%), Positives = 95/250 (38%), Gaps = 14/250 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + D ++G V+A + PAS K++ A V L + +
Sbjct: 38 PDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDE-----LDLNSTVVAD 92
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ + K G + T L L++ S ND A +A + + V MN +
Sbjct: 93 VADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLA-HMLGGQDVTVAKMNAKAA 151
Query: 144 NLGLSATHFMNAHGVVQHGHY--TTARDMAILSWRIKTDF---PQYMHYFQIKGLEIKGK 198
LG ++TH G+ G +TA D+ ++ + + + +
Sbjct: 152 TLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQ 211
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKV 255
N + + + GA G KTG+T A+ V +A +G + L+ ++ T
Sbjct: 212 LIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQ 271
Query: 256 SASLLSMGFY 265
+A+L GF
Sbjct: 272 AATLFDWGFA 281
>gi|219558934|ref|ZP_03538010.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis T17]
gi|260202046|ref|ZP_05769537.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
tuberculosis T46]
gi|289444466|ref|ZP_06434210.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis T46]
gi|289571098|ref|ZP_06451325.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis T17]
gi|289417385|gb|EFD14625.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis T46]
gi|289544852|gb|EFD48500.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis T17]
Length = 291
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 51/250 (20%), Positives = 95/250 (38%), Gaps = 14/250 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + D ++G V+A + PAS K++ A V L + +
Sbjct: 38 PDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDE-----LDLNSTVVAD 92
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ + K G + T L L++ S ND A +A + + V MN +
Sbjct: 93 VADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLA-HMLGGQDVTVAKMNAKAA 151
Query: 144 NLGLSATHFMNAHGVVQHGHY--TTARDMAILSWRIKTDF---PQYMHYFQIKGLEIKGK 198
LG ++TH G+ G +TA D+ ++ + + + +
Sbjct: 152 TLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQ 211
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKV 255
N + + + GA G KTG+T A+ V +A +G + L+ ++ T
Sbjct: 212 LIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQ 271
Query: 256 SASLLSMGFY 265
+A+L GF
Sbjct: 272 AATLFDWGFA 281
>gi|15842454|ref|NP_337491.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis
CDC1551]
gi|31794087|ref|NP_856580.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium bovis AF2122/97]
gi|57117035|ref|YP_177914.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis
H37Rv]
gi|121638792|ref|YP_979016.1| putative D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|148662755|ref|YP_001284278.1| putative D-alanyl-D-alanine carboxypeptidase DacB2 [Mycobacterium
tuberculosis H37Ra]
gi|148824100|ref|YP_001288854.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis F11]
gi|167969540|ref|ZP_02551817.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis H37Ra]
gi|215404885|ref|ZP_03417066.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis 02_1987]
gi|215412754|ref|ZP_03421466.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis 94_M4241A]
gi|215428352|ref|ZP_03426271.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis T92]
gi|215431859|ref|ZP_03429778.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis EAS054]
gi|218754664|ref|ZP_03533460.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis GM 1503]
gi|224991284|ref|YP_002645973.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium bovis
BCG str. Tokyo 172]
gi|254233002|ref|ZP_04926329.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis C]
gi|254365550|ref|ZP_04981595.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis str. Haarlem]
gi|254551983|ref|ZP_05142430.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260187930|ref|ZP_05765404.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
tuberculosis CPHL_A]
gi|260206229|ref|ZP_05773720.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
tuberculosis K85]
gi|289448576|ref|ZP_06438320.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis CPHL_A]
gi|289575616|ref|ZP_06455843.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis K85]
gi|289746710|ref|ZP_06506088.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis 02_1987]
gi|289751576|ref|ZP_06510954.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis T92]
gi|289755023|ref|ZP_06514401.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis EAS054]
gi|289763087|ref|ZP_06522465.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis GM 1503]
gi|294993993|ref|ZP_06799684.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium
tuberculosis 210]
gi|298526380|ref|ZP_07013789.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis 94_M4241A]
gi|306777199|ref|ZP_07415536.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu001]
gi|306789785|ref|ZP_07428107.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu004]
gi|306794599|ref|ZP_07432901.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu005]
gi|306798842|ref|ZP_07437144.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu006]
gi|306804688|ref|ZP_07441356.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu008]
gi|306968979|ref|ZP_07481640.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu009]
gi|306973316|ref|ZP_07485977.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu010]
gi|307081024|ref|ZP_07490194.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu011]
gi|307085623|ref|ZP_07494736.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu012]
gi|308369897|ref|ZP_07419443.2| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu002]
gi|308371173|ref|ZP_07424068.2| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu003]
gi|308375921|ref|ZP_07445548.2| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu007]
gi|7477960|pir||B70928 probable dacB protein - Mycobacterium tuberculosis (strain H37RV)
gi|13882758|gb|AAK47305.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium tuberculosis
CDC1551]
gi|31619682|emb|CAD96622.1| PROBABLE D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB2
(PENICILLIN-BINDING PROTEIN) (DD-PEPTIDASE)
(DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE)
(SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE)
[Mycobacterium bovis AF2122/97]
gi|41352764|emb|CAE55530.1| PROBABLE D-ALANYL-D-ALANINE CARBOXYPEPTIDASE DACB2
(PENICILLIN-BINDING PROTEIN) (DD-PEPTIDASE)
(DD-CARBOXYPEPTIDASE) (PBP) (DD-TRANSPEPTIDASE)
(SERINE-TYPE D-ALA-D-ALA CARBOXYPEPTIDASE) (D-AMINO ACID
HYDROLASE) [Mycobacterium tuberculosis H37Rv]
gi|121494440|emb|CAL72921.1| probable D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|124602061|gb|EAY61071.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis C]
gi|134151063|gb|EBA43108.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis str. Haarlem]
gi|148506907|gb|ABQ74716.1| putative D-alanyl-D-alanine carboxypeptidase DacB2 [Mycobacterium
tuberculosis H37Ra]
gi|148722627|gb|ABR07252.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis F11]
gi|224774399|dbj|BAH27205.1| putative D-alanyl-D-alanine carboxypeptidase [Mycobacterium bovis
BCG str. Tokyo 172]
gi|289421534|gb|EFD18735.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis CPHL_A]
gi|289540047|gb|EFD44625.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis K85]
gi|289687238|gb|EFD54726.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis 02_1987]
gi|289692163|gb|EFD59592.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis T92]
gi|289695610|gb|EFD63039.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis EAS054]
gi|289710593|gb|EFD74609.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis GM 1503]
gi|298496174|gb|EFI31468.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis 94_M4241A]
gi|308214481|gb|EFO73880.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu001]
gi|308326092|gb|EFP14943.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu002]
gi|308329656|gb|EFP18507.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu003]
gi|308333795|gb|EFP22646.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu004]
gi|308337189|gb|EFP26040.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu005]
gi|308340920|gb|EFP29771.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu006]
gi|308344832|gb|EFP33683.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu007]
gi|308348780|gb|EFP37631.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu008]
gi|308353481|gb|EFP42332.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu009]
gi|308357346|gb|EFP46197.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu010]
gi|308361230|gb|EFP50081.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu011]
gi|308364850|gb|EFP53701.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis SUMu012]
gi|323718521|gb|EGB27692.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis CDC1551A]
gi|326904525|gb|EGE51458.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis W-148]
Length = 291
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 51/250 (20%), Positives = 95/250 (38%), Gaps = 14/250 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + D ++G V+A + PAS K++ A V L + +
Sbjct: 38 PDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDE-----LDLNSTVVAD 92
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ + K G + T L L++ S ND A +A + + V MN +
Sbjct: 93 VADTQAECNCVGVKPGRSYTARQLLDGLLLVSGNDAANTLA-HMLGGQDVTVAKMNAKAA 151
Query: 144 NLGLSATHFMNAHGVVQHGHY--TTARDMAILSWRIKTDF---PQYMHYFQIKGLEIKGK 198
LG ++TH G+ G +TA D+ ++ + + + +
Sbjct: 152 TLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQ 211
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKV 255
N + + + GA G KTG+T A+ V +A +G + L+ ++ T
Sbjct: 212 LIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQ 271
Query: 256 SASLLSMGFY 265
+A+L GF
Sbjct: 272 AATLFDWGFA 281
>gi|160900293|ref|YP_001565875.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Delftia
acidovorans SPH-1]
gi|160365877|gb|ABX37490.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Delftia
acidovorans SPH-1]
Length = 365
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 10/249 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ K +LD +T V+ ASLTKLMT ++ +
Sbjct: 104 AVADPLDLKSSVALVLDQDTHEVLLSKNDHAVLPIASLTKLMTGLLISQA----HLPMDE 159
Query: 79 PITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
ITI+++ + S+S G+T+T L L ++ S N A A+ + FVQ
Sbjct: 160 AITITQDDVDTEKGSSSRLAVGTTLTRGEMLHLALMSSENRAAHALGRTFPGGLDAFVQQ 219
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-- 195
MN ++ LG++ T ++ G+ ++ARD+A+L +D +
Sbjct: 220 MNAKARLLGMTDTRYVEPTGLSSRNQ-SSARDLAVLVNVAHSDPLVREYTTSPGYEVAVG 278
Query: 196 -KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ +Y NTN V + G KTG+ +G +V A + +I V L + + +R
Sbjct: 279 RRTLQYNNTNRLVMSPTWDIGLQKTGYISEAGRCLVMQAQVAGRKIIMVFLDSAGKFSRL 338
Query: 254 KVSASLLSM 262
+ +
Sbjct: 339 GDAERVRHW 347
>gi|313113074|ref|ZP_07798708.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310624612|gb|EFQ07933.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 427
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 65/332 (19%), Positives = 123/332 (37%), Gaps = 16/332 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE---KKAM 75
+ I ++ L + +TG I D ASLTKLMTA ++ K+ + +
Sbjct: 32 PMPIQTASETEAVYLFNADTGKTILNQNADQQQYVASLTKLMTALLLLESGKDLNGEVTV 91
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
T ++ + + G T+ + L +++ SAND A IA + + FV
Sbjct: 92 PTALTQEFRDIQNANGTTMGLRIGETVRRIDLLNAMLIVSANDAASVIAYDVGGSVLDFV 151
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------HYFQ 189
+ MN ++ LG + T+F AHG+ +G+ +TA+D+A ++ + +
Sbjct: 152 KQMNVRAQELGCTGTNFTCAHGLFDYGNVSTAQDLAKIAAACAANQTFAQVAGTASYVLP 211
Query: 190 IKGLEIKGKKYPNTNWAV-----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
L ++N + +K GFT +G IVA A + + VIL
Sbjct: 212 ATNLRKAEHTISSSNSLMNSESANYREYVRWVKGGFTTLAGRCIVAFAEKDGHTYGLVIL 271
Query: 245 GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS-NEVPNISEEVCTTQKEI 303
G + L F + DR ++ + P ++
Sbjct: 272 GCDTPDHLFAECDDLFDWAFASFADRPLVDTQTEITTVALTKCRTEPTVALYAAAPVSGY 331
Query: 304 INYNTQMKEA-KDKESHFIDFEKITLLKNKIT 334
+ + + + ES + +++
Sbjct: 332 GHADDIVTYSFDLPESIAATVKSGSVVGTATV 363
>gi|170694729|ref|ZP_02885880.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
graminis C4D1M]
gi|170140360|gb|EDT08537.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
graminis C4D1M]
Length = 394
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 54/247 (21%), Positives = 97/247 (39%), Gaps = 8/247 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D NTG + + AS+TKLMTA VV +
Sbjct: 132 TPDALMLRSSVAYVVDQNTGESLFDKNSRAVVPIASITKLMTAMVVLDSKEPMT---DQL 188
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 189 EVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMN 248
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ LG++ THF N G+ + ++ARD+ + GK+
Sbjct: 249 AKARQLGMTDTHFENPTGLTS-QNVSSARDLVKMVNAAYQYPLIRRFSTDRSYEVYTGKR 307
Query: 200 ---YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN V G KTGF +G +V A + ++ V+L + + +R
Sbjct: 308 TLAYNSTNALVRNPTWEIGLQKTGFINEAGECLVMQANIHGRPMVLVLLDSSGKYSRFAD 367
Query: 256 SASLLSM 262
+ L +
Sbjct: 368 ATRLRTW 374
>gi|256851221|ref|ZP_05556610.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
jensenii 27-2-CHN]
gi|260660645|ref|ZP_05861560.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
jensenii 115-3-CHN]
gi|297206087|ref|ZP_06923482.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
jensenii JV-V16]
gi|256616283|gb|EEU21471.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
jensenii 27-2-CHN]
gi|260548367|gb|EEX24342.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
jensenii 115-3-CHN]
gi|297149213|gb|EFH29511.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
jensenii JV-V16]
Length = 397
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 61/372 (16%), Positives = 126/372 (33%), Gaps = 42/372 (11%)
Query: 1 MRQF-----------LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
MR+F L II + L+ + + + ++D TG ++ +
Sbjct: 3 MRRFRDKLKIAWLVALCIIGIINLTFFNVVKADEKPVNVKAAFMMDEKTGQILYQKNATR 62
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ ASLTK++T V+ + + K I ISK+ ++ ++
Sbjct: 63 KYAVASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADDWRFSNVPLIYNERYTVR 122
Query: 110 LLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------- 158
LI A E + + F M +K G+ N G+
Sbjct: 123 SLIESMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVKNPEIYNMIGLSNGELGN 182
Query: 159 -------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ +A+DMA++S + +P+ ++ + K K + ++
Sbjct: 183 LKLPKIDDNQENQFSAKDMALISKYLIDKYPEVLNITKTKYANFKISQDNEIKMENIIYM 242
Query: 212 -----------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-RNKVSASL 259
DG+KTG T A+G+ V + ++ +I V+L + + + ++
Sbjct: 243 LEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVVLDVPGEYSNQFIQTNNM 302
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ F K IN Q ++ +++ + + S
Sbjct: 303 IDTVFDKYQLVK-INKNNLPKKYQKITITSKKQKKKISVVPETDSALWLAKDQKLANLSP 361
Query: 320 FIDFEKITLLKN 331
++ +K LK
Sbjct: 362 KLEVKKQNKLKK 373
>gi|300902216|ref|ZP_07120216.1| Penicillin-binding protein 7 [Escherichia coli MS 84-1]
gi|301305178|ref|ZP_07211277.1| Penicillin-binding protein 7 [Escherichia coli MS 124-1]
gi|300405735|gb|EFJ89273.1| Penicillin-binding protein 7 [Escherichia coli MS 84-1]
gi|300839582|gb|EFK67342.1| Penicillin-binding protein 7 [Escherichia coli MS 124-1]
gi|315255353|gb|EFU35321.1| Penicillin-binding protein 7 [Escherichia coli MS 85-1]
Length = 313
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 22/280 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA------------ETNKLPYYTLLDTNTGHVIAENYPD 48
M +F V + L PF A ++D NT I N+PD
Sbjct: 4 MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAMIVDLNTNKAIYSNHPD 63
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA VV L I+ + S + S ++ + L
Sbjct: 64 LVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPE---MKGVYSRVRLNSEISRKDML 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A ++A K F++ MN +K+LG++ T F+ G+ + +TAR
Sbjct: 121 LLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTRFVEPTGL-SVHNVSTAR 179
Query: 169 DMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTC 222
D+ L + + + NTN V KTGFT
Sbjct: 180 DLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTN 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G +V + ++ + V++ A + T ++ L +
Sbjct: 240 AAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 279
>gi|326777112|ref|ZP_08236377.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus
XylebKG-1]
gi|326657445|gb|EGE42291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces cf. griseus
XylebKG-1]
Length = 477
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/279 (17%), Positives = 98/279 (35%), Gaps = 19/279 (6%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + + + D G V+A + PAS K++ A V L+ LT
Sbjct: 65 APVLPKELTGRSWIVADAENGDVLAAHNAHWRLPPASTLKMLFADTVLPALQ--PTSLTH 122
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T + + S+ K + L L + + + AV + + + V M
Sbjct: 123 KVTEGELSGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGNDAVHVLSEMYGGVPQTVSAM 182
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY---------MHYFQ 189
++ L T ++ G G ++A D+ +++ +
Sbjct: 183 QKHAEELQALDTRVVSPDGYDAPGQVSSAYDLTLIARSGLQKKDFREYAATASADFPGEE 242
Query: 190 IKGLEIKGKKYPNTNWAV------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
KG + + + NTN + + G G+K G+T +G A + + L+ +
Sbjct: 243 KKGKKRESFEIQNTNRLITGDIGVDPYQGIAGVKNGYTTHAGNTFTGVAERNGKVLLVTV 302
Query: 244 LG--ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
+ A + + K +A LL GF + ++
Sbjct: 303 MNPSAEESHAVYKEAAHLLDWGFAASGKVAPVGELVPPK 341
>gi|126640330|ref|YP_001083314.1| D-alanyl-D-alanine endopeptidase penicillin-binding protein 7 and
penicillin-binding protein 8 [Acinetobacter baumannii
ATCC 17978]
Length = 255
Score = 122 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 99/247 (40%), Gaps = 8/247 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + ++D TG V+ + AS+TKLMTA V + T
Sbjct: 4 NAQPSVSARAALVMDAQTGEVLYSKNTNASVPIASITKLMTAVVTADARLNMSEEI-TLE 62
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I + S+ST + G M L ++KS N A A+A + FV MN
Sbjct: 63 QIDFAGAGGKNSSSTLRVGDKMNRAEVLLFALMKSENPAAAALARTYPGGRAAFVAAMNA 122
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK-- 198
++ LG++ATH+ + G+ + ++ARD+ IL+ + + + +
Sbjct: 123 KARALGMNATHYYESTGL-DPRNVSSARDLGILAS-TASQYGLIRQFSTTPTYDFNLGYR 180
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V + KTG+ +G +V + + V+LG RN
Sbjct: 181 VLKSNNTNALVRNGGWNINLSKTGYINEAGRCVVMHTTVNSRPAVIVLLGEPSTQARNND 240
Query: 256 SASLLSM 262
+ +LL
Sbjct: 241 ATNLLGW 247
>gi|124267287|ref|YP_001021291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium
petroleiphilum PM1]
gi|124260062|gb|ABM95056.1| Serine-type D-Ala-D-Ala carboxypeptidase [Methylibium
petroleiphilum PM1]
Length = 344
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 10/245 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ ++D +T V+ + ASLTKLMT+ VV + L +TI
Sbjct: 82 PLDLRSSVALVMDQDTHEVLIDKNAQAVLPIASLTKLMTSVVVVEAGQ----SLDEMLTI 137
Query: 83 SKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
S++ + S S G+ +T L L ++ S N A A+ FV MN
Sbjct: 138 SQDDVDTEKGSGSRLAVGTQLTRGEMLHLALMSSENRAAHALGRHYPGGLVAFVSAMNAR 197
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---KGK 198
+ LG++ T ++ G+ ++ARD+A L + +
Sbjct: 198 ASLLGMTDTRYVEPTGLSSRNQ-SSARDLAALVSAAYQHPLIRELSTSQEYSVAVGRRTL 256
Query: 199 KYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+Y NTN V G KTG+ +G +V A + LI V L + + +R +
Sbjct: 257 QYRNTNGLVRNPAWDIGLQKTGYISEAGRCLVMQAQLAGRKLIMVFLDSAGKYSRQGDAE 316
Query: 258 SLLSM 262
+
Sbjct: 317 RVRHW 321
>gi|323526624|ref|YP_004228777.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. CCGE1001]
gi|323383626|gb|ADX55717.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. CCGE1001]
Length = 391
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 8/247 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D NTG + + AS+TKLMTA VV +
Sbjct: 129 TPDALMLRSSVAYVVDQNTGEPLFDKNSRAVVPIASITKLMTAMVVLDSKEPMS---DQL 185
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 186 EVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMN 245
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF---PQYMHYFQIKGLEIK 196
++ LG++ THF N G+ + ++ARD+ + + +
Sbjct: 246 AKARQLGMTDTHFENPTGLTS-QNVSSARDLVKMVNAAYQYPLIRKFSTDHSYEVYTGKR 304
Query: 197 GKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN V G KTGF +G +V A + ++ V+L + + +R
Sbjct: 305 TLAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQANIHGRPMVMVLLDSSGKYSRFAD 364
Query: 256 SASLLSM 262
+ L +
Sbjct: 365 ATRLRTW 371
>gi|313651237|gb|EFS15635.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2a str. 2457T]
gi|332755752|gb|EGJ86113.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri K-671]
gi|332756170|gb|EGJ86521.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 2747-71]
Length = 300
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 10/245 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI N+PD AS++KLMTA VV L I+ +
Sbjct: 26 PEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQT 85
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + S ++ + L L ++ S N A ++A K F++ MN +K
Sbjct: 86 PE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAK 142
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGK 198
+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 143 SLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTL 201
Query: 199 KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN V KTGFT A+G +V + ++ + V++ A + T ++
Sbjct: 202 PFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADAS 261
Query: 258 SLLSM 262
L +
Sbjct: 262 RLRTW 266
>gi|227543628|ref|ZP_03973677.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
CF48-3A]
gi|300908686|ref|ZP_07126149.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
[Lactobacillus reuteri SD2112]
gi|68160975|gb|AAY86919.1| lr1832 [Lactobacillus reuteri]
gi|227186372|gb|EEI66443.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
CF48-3A]
gi|300894093|gb|EFK87451.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
[Lactobacillus reuteri SD2112]
Length = 403
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 67/367 (18%), Positives = 139/367 (37%), Gaps = 35/367 (9%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAET-NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ + I+++ M+ + +A + D +TG +I + D AS+TK
Sbjct: 1 MKKLTVFILSLFMMLMVGSQSVLANNRIDASAAIMADASTGQIIYKQNVDKALPVASITK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114
L+T V+ +++K+ T + I+ ++ S+ K G + ++ + +VK
Sbjct: 61 LLTILVIEDEIQQKQLSWDTQVKITPEIAAISNDAAYSSIGLKSGQSYSVRTLINAALVK 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162
SA+ VA+A + +F M +K +G++ T+ +N+ G+
Sbjct: 121 SADGATVALATATGDGTDEFNLKMMQKAKKIGMTKTNIVNSVGLDNGDMKSFKLADLPNN 180
Query: 163 --HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLG--- 212
+ +ARD+AILS +P+ + K ++ + K N N +
Sbjct: 181 AANTMSARDVAILSQYFVKHYPELLQITAQKEVKFQIAKDQVKTEKNLNKMLPGEQYAVK 240
Query: 213 ---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLS--MGFY 265
DG+KTG + ++G ++ +I VIL + ++ R K + L
Sbjct: 241 GVTIDGLKTGTSDSAGACFASTGKYQGHRIITVILHSKGSNKDNRFKATQDLYKILKTED 300
Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ K + + + + + V N + K+ K
Sbjct: 301 HLQKIKVPSSVTTRKVANGVEKTMKLTPQHVTIWSPYDTKTNYTIGTQYKKKKLEAPIWK 360
Query: 326 ITLLKNK 332
+ N
Sbjct: 361 GERVGNL 367
>gi|154504456|ref|ZP_02041194.1| hypothetical protein RUMGNA_01960 [Ruminococcus gnavus ATCC 29149]
gi|153795231|gb|EDN77651.1| hypothetical protein RUMGNA_01960 [Ruminococcus gnavus ATCC 29149]
Length = 468
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/298 (18%), Positives = 106/298 (35%), Gaps = 23/298 (7%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+N ++D N+G V+ + PAS+TK+++ + K
Sbjct: 61 TNEISNWPQGPAIYAASGIVMDMNSGAVLYAKKAEEKRYPASITKVLSVLTALQYAKMSD 120
Query: 74 AMLTTPITIS---KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
++ + +IS + ++ + L S + L
Sbjct: 121 TVVFSEDSISFLQWDDAQIGMKPGEEISMESALYGMLLASANEVSYAVAENVGKQYLNGG 180
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF-- 188
+F++ MN S+ LG ++++++NA+G+ HYTTA DMA ++ +
Sbjct: 181 YAEFIEEMNRISQELGCTSSNWVNANGLHDDNHYTTAHDMARIAAAAYQNEEFRRLETPL 240
Query: 189 -----------QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + L+ K N+ + A KTG+T S +V A D
Sbjct: 241 EYKVPPTNLTAEERILDQNHKMLWPENY--YYYANAKAGKTGYTDQSKTTLVTMAEGNDM 298
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK----INYIIKDFYQQNLSNEVPN 291
L AV+L + + + F N + I+ F +++ VP
Sbjct: 299 QLAAVVLHTYGVDA-YTDTRFMYDYAFTNFERLNLRECETSSDIESFDKEDAYVVVPK 355
>gi|15605280|ref|NP_220066.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia trachomatis
D/UW-3/CX]
gi|3328991|gb|AAC68153.1| D-Ala-D-Ala Carboxypeptidase [Chlamydia trachomatis D/UW-3/CX]
Length = 343
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 64/299 (21%), Positives = 115/299 (38%), Gaps = 34/299 (11%)
Query: 1 MRQFLV----IIAMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPA 54
MR F + I +A FP + T ++ ++G ++ E DH PA
Sbjct: 1 MRTFFLLYRFFICLAPFFLSFPLYADPHTVLTKGIAAAVVHADSGAILKEKNLDHKIFPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTP-----------------ITISKNASEYPPSNSTFK 97
S+TK+ TA ++ + T + E K
Sbjct: 61 SMTKIATALLILRQYPDVLTRFITTRREPLTSITPQAKQQSGYRSPPHWLETDGMTIQLK 120
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
++ + L++ SAND A +A++ C++ F++ +N + LG THF + HG
Sbjct: 121 VKEEVSGWDLFHALLISSANDAANVLADACCQSVSAFMRQLNEFLRELGCQNTHFNSPHG 180
Query: 158 VVQHGHYTTARDMAILSWRIKTDF-----PQYMHYFQIKGLEIKGKKYPNTNW-----AV 207
+ HYTTARD++++ + Y + +TN +
Sbjct: 181 LHHPDHYTTARDLSLIMKEALKEPLFRQVIHTASYTMEATNLSPERVLSSTNKLLSSSST 240
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLLSMGFY 265
+ G KTG T ++G NI+ +A + ++S+I V G + + +L F
Sbjct: 241 YFYPPCLGGKTGTTKSAGKNIIFAAEKNNRSIIVVAAGYFGPAAQLYQDAIALCEDLFN 299
>gi|294788601|ref|ZP_06753843.1| D-alanyl-D-alanine carboxypeptidase family protein [Simonsiella
muelleri ATCC 29453]
gi|294483478|gb|EFG31163.1| D-alanyl-D-alanine carboxypeptidase family protein [Simonsiella
muelleri ATCC 29453]
Length = 292
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 54/250 (21%), Positives = 103/250 (41%), Gaps = 9/250 (3%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ +++ NTG ++ + D + AS++KLM+A V+
Sbjct: 38 FAASSFAYTPLLNARSALVMNANTGKILYQKNVDTVRSIASISKLMSAMVLLDAKLNMY- 96
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ S G+T+T L L ++ S N A+A + F
Sbjct: 97 --EDITITEDEIDRLKGTGSRLSIGTTLTRGELLHLGLMSSENRAIHALARTYPGGMGAF 154
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW----RIKTDFPQYMHYFQI 190
V MN +++LG++ + F G+ + +TARD++++ + +Y Q+
Sbjct: 155 VAAMNAKAQSLGMNKSRFFEPTGL-DPRNVSTARDLSVMVRAASKYPQIRSLTTSNYGQV 213
Query: 191 KGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K + Y NTN V KTG+ +G ++V A G+Q ++ V+LG+
Sbjct: 214 YTSAGKTQTYKNTNALVREGDWDISLQKTGYIKEAGRSMVLQARLGNQPVVIVVLGSSTS 273
Query: 250 NTRNKVSASL 259
++R + + L
Sbjct: 274 SSRVRDAREL 283
>gi|317508066|ref|ZP_07965751.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC
BAA-974]
gi|316253634|gb|EFV13019.1| D-alanyl-D-alanine carboxypeptidase [Segniliparus rugosus ATCC
BAA-974]
Length = 399
Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/264 (18%), Positives = 87/264 (32%), Gaps = 7/264 (2%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ A + + D ++G V+A + P + PAS K + A V
Sbjct: 70 LLAACGVVQPAGSPALPEGPARGWLVADLDSGQVLAASDPHGRFRPASTIKTLLALAVLD 129
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L + T + + P K + L ++ A + + +
Sbjct: 130 ELDPNHVVQLTDGDQTADEESQHPFIEPGGKYTVFELLEGALMVSSNGAANALARVLGAG 189
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQYM 185
+ V+ MN+ + LG T GV ++ D+A++
Sbjct: 190 GGV-EAAVKKMNDLAGLLGAKDTRATTPSGVEAPGGPSTSSPYDLALIFRAAMKQDIFRK 248
Query: 186 ---HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ N N + + G G KTGFT S VA+A + + L+
Sbjct: 249 IVSQKSITMHGDPDDFPLVNDNAMLDDYPGMLGGKTGFTEDSQKTFVAAAERDGRRLVVT 308
Query: 243 IL-GALDRNTRNKVSASLLSMGFY 265
+ G T + +++LL GF
Sbjct: 309 QMYGLNGATTFREQASALLDWGFA 332
>gi|145294853|ref|YP_001137674.1| hypothetical protein cgR_0800 [Corynebacterium glutamicum R]
gi|140844773|dbj|BAF53772.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 436
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 13/243 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
ET + + D ++G +IA P + PAS+ K++ + V TT +T +
Sbjct: 123 ETITASAWMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAIDE-----LNPTTVVTGT 177
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
A+ S +G T+D L L++ S ND A +A+ L ++ ++ +N +K
Sbjct: 178 MEAANIEGSRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQEL-GGDQATLEKVNALAK 236
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----- 198
LG T G+ G T+A DM+ L ++ P + ++ G
Sbjct: 237 ELGTQDTFVATYSGLDAPGMSTSAYDMS-LIYQHAWQNPVFESIISTDHIDFPGWGDNEG 295
Query: 199 -KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ N N G KTG+T + V +G + L AV+L + + R A
Sbjct: 296 FQVWNDNALFMNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLLDSTVSDIRPWEQA 355
Query: 258 SLL 260
LL
Sbjct: 356 RLL 358
>gi|21323446|dbj|BAB98073.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum
ATCC 13032]
Length = 379
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 13/243 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
ET + + D ++G +IA P + PAS+ K++ + V TT +T +
Sbjct: 66 ETITASAWMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAIDE-----LNPTTVVTGT 120
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
A+ S +G T+D L L++ S ND A +A+ L ++ ++ +N +K
Sbjct: 121 MEAANIEGSRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQEL-GGDQATLEKVNALAK 179
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----- 198
LG T G+ G T+A DM+ L ++ P + ++ G
Sbjct: 180 ELGTQDTFVATYSGLDAPGMSTSAYDMS-LIYQHAWQNPVFESIISTDHIDFPGWGDNEG 238
Query: 199 -KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ N N G KTG+T + V +G + L AV+L + + R A
Sbjct: 239 FQVWNDNALFMNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLLDSTVSDIRPWEQA 298
Query: 258 SLL 260
LL
Sbjct: 299 RLL 301
>gi|19551910|ref|NP_599912.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum
ATCC 13032]
gi|62389569|ref|YP_224971.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum
ATCC 13032]
gi|41324903|emb|CAF19385.1| D-ALANYL-D-ALANINE CARBOXYPEPTIDASE [Corynebacterium glutamicum
ATCC 13032]
Length = 436
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 59/243 (24%), Positives = 100/243 (41%), Gaps = 13/243 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
ET + + D ++G +IA P + PAS+ K++ + V TT +T +
Sbjct: 123 ETITASAWMVFDIDSGEIIAAKDPHGRYRPASIIKVLLSLVAIDE-----LNPTTVVTGT 177
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
A+ S +G T+D L L++ S ND A +A+ L ++ ++ +N +K
Sbjct: 178 MEAANIEGSRVGVGEGGQYTVDQLLHGLLLASGNDAAYLLAQEL-GGDQATLEKVNALAK 236
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----- 198
LG T G+ G T+A DM+ L ++ P + ++ G
Sbjct: 237 ELGTQDTFVATYSGLDAPGMSTSAYDMS-LIYQHAWQNPVFESIISTDHIDFPGWGDNEG 295
Query: 199 -KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ N N G KTG+T + V +G + L AV+L + + R A
Sbjct: 296 FQVWNDNALFMNDPDGIGGKTGYTDDANHTFVGGLDRGGRRLAAVLLDSTVSDIRPWEQA 355
Query: 258 SLL 260
LL
Sbjct: 356 RLL 358
>gi|307729203|ref|YP_003906427.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. CCGE1003]
gi|307583738|gb|ADN57136.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. CCGE1003]
Length = 393
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 8/247 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D NTG + + AS+TKLMTA VV +
Sbjct: 131 TPDALMLRSSVAYVVDQNTGEPLFDKNSRAVVPIASITKLMTAMVVLDSKEPMT---DQL 187
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 188 EVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMN 247
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM---HYFQIKGLEIK 196
++ LG++ THF N G+ + ++ARD+ + + +
Sbjct: 248 AKARQLGMTDTHFENPTGLTS-QNVSSARDLVKMVNAAYQYPLIRRFSTDHSYEVYTGKR 306
Query: 197 GKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN V G KTGF +G +V A + ++ V+L + + +R
Sbjct: 307 TLAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQANIHGRPMVLVLLDSSGKYSRFAD 366
Query: 256 SASLLSM 262
+ L +
Sbjct: 367 ATRLRTW 373
>gi|149928524|ref|ZP_01916755.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Limnobacter
sp. MED105]
gi|149822763|gb|EDM82019.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Limnobacter
sp. MED105]
Length = 278
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/245 (22%), Positives = 89/245 (36%), Gaps = 10/245 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ + D ++ V+ P AS+TK+MT V L ITI
Sbjct: 25 PLSLNSSVALVADADSLEVLYAKNPSAVVPIASITKIMTVVVTLEAG----LNLDEVITI 80
Query: 83 -SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+++ Y + S K GS T + L ++ S N A A+ S V MN
Sbjct: 81 TTEDIDYYKNTRSRLKPGSEFTRRELIHLALMASENRAASALGRSYPGGLAACVAEMNRR 140
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTT---ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+ +L + T+F G+ + AR + F ++ +
Sbjct: 141 AASLRMFNTNFAETTGLSVENKSSANDLARMVLHAQRFPLIRQFSTDPQFSVQSGK-GQL 199
Query: 199 KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN + KTGF +G +V A GD++L+ V+L AL R +
Sbjct: 200 NFRNTNRLIKNKEWDIQVQKTGFINEAGRCLVMKAKVGDRNLVIVLLDALGSQARFADAE 259
Query: 258 SLLSM 262
+
Sbjct: 260 RIREY 264
>gi|209522105|ref|ZP_03270754.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. H160]
gi|209497459|gb|EDZ97665.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. H160]
Length = 396
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 6/246 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D N+G + + AS+TKLMTA VV +
Sbjct: 134 TPDALMLRSSVAYVIDQNSGESLFDKNSRAVVPIASITKLMTAMVVLDSKEPMT---DQI 190
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 191 EVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFLAAMN 250
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+K LG++ THF N G+ + + +++ + + + +
Sbjct: 251 AKAKQLGMNDTHFENPTGLTSMNVSSARDLVKMVNAAYQYPLIRKFSTDHSYDVYTGKRT 310
Query: 200 --YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
Y +TN V G KTGF +G +V A + +I V+L + + +R +
Sbjct: 311 LAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQATIHGRPMILVLLDSSGKYSRFADA 370
Query: 257 ASLLSM 262
L +
Sbjct: 371 TRLRTW 376
>gi|145517883|ref|XP_001444819.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412252|emb|CAK77422.1| unnamed protein product [Paramecium tetraurelia]
Length = 397
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/258 (21%), Positives = 111/258 (43%), Gaps = 14/258 (5%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+I P S+A + +++ G ++ AS+TK+MT ++ ++ +
Sbjct: 142 ISITPLESVAPLVSAQSWCVINGKNGQLMGGYNQYKSRQMASITKIMTCWLALKLTQQFQ 201
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK- 132
L ++ + + G +++ + L L++ S ND A+++ + +
Sbjct: 202 LDLDNTYFTAER---IGGTTAQLSSGDKLSIRDLLYGLMLPSGNDAAISLQHNFELYKGC 258
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--------FPQY 184
F+Q MN ++++G+ T + N HG+ +Y++A D+ IL++ + Y
Sbjct: 259 DFIQQMNQNAQDIGMELTSYANPHGLYHEANYSSAYDIGILTYHAMQNLQFASIVKTKIY 318
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ K E K + NTN + G G+KTG T +G +V + S I V+L
Sbjct: 319 FSEIEDKFGESKEIFWENTNRM--LYQGFRGVKTGITKEAGPCVVEYFEDNENSYIIVLL 376
Query: 245 GALDRNTRNKVSASLLSM 262
+ R + + LL
Sbjct: 377 NCRSVDLRWQDAIKLLDW 394
>gi|108807033|ref|YP_650949.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis Antiqua]
gi|108778946|gb|ABG13004.1| Serine-type D-Ala-D-Ala carboxypeptidase [Yersinia pestis Antiqua]
Length = 232
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 6/191 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A Y L+D N+G V+AE PD +PASLTK+M++YV+ +K K +
Sbjct: 33 PAAPQIDAKAYVLMDFNSGKVLAEGNPDLRLDPASLTKIMSSYVIGQSIKAGKIQPDDLV 92
Query: 81 TISKNASEYPPSN------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
T+ K+A K G + + + K ++++S ND ++A+A+ + ++ F
Sbjct: 93 TVGKDAWATGNPALRGSSLMFLKPGDRVKVSDLNKGIVIQSGNDASIALADYVAGSQDSF 152
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
V MNN +K LGLS THFM HG+ G Y+TARDMA+L + D P+ + K
Sbjct: 153 VGLMNNYAKALGLSNTHFMTVHGLDSPGQYSTARDMALLGQALIRDVPEEYALHKEKEFT 212
Query: 195 IKGKKYPNTNW 205
+ N N
Sbjct: 213 FNKIRQTNRNR 223
>gi|152987366|ref|YP_001349992.1| D-alanyl-D-alanine endopeptidase [Pseudomonas aeruginosa PA7]
gi|150962524|gb|ABR84549.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas aeruginosa PA7]
Length = 310
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/260 (22%), Positives = 95/260 (36%), Gaps = 10/260 (3%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A++ L + + + D N+G V+ PD AS+TKLMTA VV
Sbjct: 20 AISASPPPKAKLPLQQELASGSALVTDQNSGKVLYSRNPDLVVPIASITKLMTAMVVLDS 79
Query: 69 LKEKKAMLTTPITI-SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
L + I SE S + GS ++ + L L ++ S N A ++A++
Sbjct: 80 K----LPLDEVLPIAISETSEMRGVFSRVRVGSQISRRDMLLLALMSSENRAAASLAQNY 135
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ FV+ MN + LG+ T ++ G+ H T +L +
Sbjct: 136 PGGKNAFVKAMNAKAHALGMKNTRYVEPTGLSLHNVSTARDLTRLLVASRQYPLLSQWST 195
Query: 188 FQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
K + + Y NTN + KTGFT +G + + V
Sbjct: 196 TPEKTVAFRHPNYTLGFRNTNHLINNKTWNIQLTKTGFTNEAGHCLAMRTTINRSPVNLV 255
Query: 243 ILGALDRNTRNKVSASLLSM 262
+L A + T + L
Sbjct: 256 VLDAFGKYTHFADATRLRRW 275
>gi|319793229|ref|YP_004154869.1| peptidase s11 D-alanyL-D-alanine carboxypeptidase 1 [Variovorax
paradoxus EPS]
gi|315595692|gb|ADU36758.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Variovorax
paradoxus EPS]
Length = 394
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 8/244 (3%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
A K ++D +T V+ ASLTKLMT ++ + ITI
Sbjct: 132 ALDLKSSVALVIDQDTHEVLFSKNDHAVLPIASLTKLMTGLLISEA----RLPNDELITI 187
Query: 83 SKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+++ + S S G+ ++ L L ++ S N A A+ + FV MN
Sbjct: 188 TQDDVDTEKGSRSRLTVGTMLSRGELLHLALMSSENRAAHALGRTYPGGLSTFVSIMNAK 247
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--K 199
+K LG+ T ++ G+ + +++ + + +E+ + +
Sbjct: 248 AKMLGMKDTRYVEPTGLSSRNQSSAQDLALLVNAAYADATVRSLSTSPEYQVEVGNRVLQ 307
Query: 200 YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ TN V + G KTGF +G +V A + LI V L + + +R +
Sbjct: 308 FNTTNRLVKSPDWEIGVQKTGFINEAGQCLVMQAKVAGRKLIMVFLDSAGKFSRIADAER 367
Query: 259 LLSM 262
+
Sbjct: 368 VRRW 371
>gi|182436490|ref|YP_001824209.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|178465006|dbj|BAG19526.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
subsp. griseus NBRC 13350]
Length = 571
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/279 (17%), Positives = 98/279 (35%), Gaps = 19/279 (6%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + + + D G V+A + PAS K++ A V L+ LT
Sbjct: 165 APVLPKELTGRSWIVADAENGDVLAAHNAHWRLPPASTLKMLFADTVLPALQ--PTTLTH 222
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T + + S+ K + L L + + + AV + + + V M
Sbjct: 223 KVTEGELSGVGEGSSLVGIKEDHTYTVHDLWLGVFLRSGNDAVHVLSEMYGGVPQTVSAM 282
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY---------MHYFQ 189
++ L T ++ G G ++A D+ +++ +
Sbjct: 283 QKHAEELQALDTRVVSPDGYDAPGQVSSAYDLTLIARSGLQKKDFREYAATASADFPGEE 342
Query: 190 IKGLEIKGKKYPNTNWAV------GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
KG + + + NTN + + G G+K G+T +G A + + L+ +
Sbjct: 343 KKGKKRESFEIQNTNRLITGDIGVDPYQGIAGVKNGYTTHAGNTFTGVAERNGKVLLVTV 402
Query: 244 LG--ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
+ A + + K +A LL GF + ++
Sbjct: 403 MNPSAEESHAVYKEAAHLLDWGFAASGKVAPVGELVPPK 441
>gi|158929991|gb|ABW82972.1| endopeptidase [uncultured bacterium pEAF66]
Length = 368
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 8/244 (3%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+LD N+ V+ E AS+TKLMT VV ++ +LT
Sbjct: 105 PLDLASSVALVLDQNSAEVLFEKNSKIALPIASITKLMTGLVVVEANQDMNEILTVTE-- 162
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ ++S + GS ++ + L + ++ S N A A+ + FV+ MN +
Sbjct: 163 -DDVDHEKWTSSRLRVGSQLSRASLLHIALMSSENRAAAALGRNYPGGVAGFVEAMNAKA 221
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF---PQYMHYFQIKGLEIKGKK 199
+ LG+ T F+++ G+ + ++A D+A L+ + +
Sbjct: 222 RALGMYDTRFVDSSGL-SSKNISSAHDLAKLAAFAYHQPLLRQFSTDPKSVVAASGRTLN 280
Query: 200 YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
Y NTN+ V + G KTGF +G +V A+ +++I V L + + +R +
Sbjct: 281 YHNTNYLVASPDWDIGLQKTGFINEAGRCLVMQAMISGRAVIMVFLDSKGKQSRTADAGR 340
Query: 259 LLSM 262
+
Sbjct: 341 VKRW 344
>gi|260583723|ref|ZP_05851471.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
ATCC 700633]
gi|260158349|gb|EEW93417.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
ATCC 700633]
Length = 473
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 75/343 (21%), Positives = 134/343 (39%), Gaps = 35/343 (10%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D +TG ++ + D PW+PAS++K+MTAY+ F +KE K L T +T ++
Sbjct: 70 ESTIMVDADTGEIVFGSNIDQPWDPASISKMMTAYMAFEAMKEGKLSLDTVVTATEEDRA 129
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
SN+ G ++ L ++ S+N + +A + ++ +F+ MN K
Sbjct: 130 ISTIGEISNNIIVAGVDYPIEELLYMMFYPSSNVATLMVARATGLSDTEFLNKMNAKFKE 189
Query: 145 LGLSATHFMNAHGV---------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
G+ T F NA G + TTARD+AIL++ DFP+ ++ +
Sbjct: 190 WGMENTKFNNASGAVASAFRGYYTPEGYNNNRYNQTTARDLAILAYHFLKDFPEITNFTK 249
Query: 190 IKGLE------IKGKKYPNTNWAVGTF---LGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ + Y + G + G DG KTG + ++ FN + +A Q D I
Sbjct: 250 NPLITVMVGTPYEESFYTYNSSIPGMYQGFPGVDGFKTGSSPSAAFNHLLTAKQEDTRFI 309
Query: 241 AVILGALDRNTRNKVS-------ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
VILG ++ S LL F + + + + +
Sbjct: 310 QVILGVGAWEDKDNSSFFKSQIGNGLLRKAFSEYETQTVLKAGEHTIDGVKVQLDKDIKT 369
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++ D E +T I ++
Sbjct: 370 LVRIGETPKYHLKEDKIVIETDLPRITSKIEPLTYPVTIIPEE 412
>gi|157151599|ref|YP_001450863.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus gordonii str.
Challis substr. CH1]
gi|157076393|gb|ABV11076.1| D-Alanyl-D-Alanine carboxypeptidase [Streptococcus gordonii str.
Challis substr. CH1]
Length = 460
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 67/361 (18%), Positives = 131/361 (36%), Gaps = 55/361 (15%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---------------KLPYYTLLDTNTGHVIAEN 45
M++ + + + A+ + ++D NTG V+ ++
Sbjct: 1 MKKKWIALVCLVTLLFGAATVSADELMDITRKAYPDVKDINRPRSSLIIDGNTGDVLWQD 60
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG-----S 100
D +PAS++KLMT Y++F + + K T I S+
Sbjct: 61 NIDEVRDPASMSKLMTLYLLFEAMGQGKLSEDTIIKASQTDQNIAGIYEISNNKIVAGVD 120
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG--- 157
+ ++ S + F+ MN+ +K LG++ TH+ NA G
Sbjct: 121 YTISELITMTVVPSSNATTVMIANYLSNNDPDAFLDQMNSKAKELGMTNTHWYNASGAAA 180
Query: 158 ------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
+ TTARD+AIL++ +P + Y + +K +
Sbjct: 181 SSFKGFYTPQRYDNNAANQTTARDLAILAYNFVKKYPGILKYTNKPVVTVKKGTPYEETF 240
Query: 206 AVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT----- 251
+ G DG+KTG + FN +A+ +G+Q +I+VI+G D +
Sbjct: 241 ETYNYSVPGAKYGLEGVDGLKTGSSPRGAFNYIATVKRGEQRIISVIMGVGDWSDQDGEY 300
Query: 252 -RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
R+ +L+ + + +K + + + + ++ T K+ N +
Sbjct: 301 YRHPFGNALIEKAYADYEYKKLLTAGEH-----KIDGKTYKLEKDFYGTVKKGTNPKLVV 355
Query: 311 K 311
K
Sbjct: 356 K 356
>gi|120403176|ref|YP_953005.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii
PYR-1]
gi|119955994|gb|ABM12999.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii
PYR-1]
Length = 294
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/290 (19%), Positives = 105/290 (36%), Gaps = 31/290 (10%)
Query: 1 MRQFLVII--AMAMLSNIFPFLSIA---------------ETNKLPYYTLLDTNTGHVIA 43
M + L + + ++ ++ + A + + D +TG V+A
Sbjct: 1 MTRLLACLGAVLCLVGSVSVPHAAAVPATGIVQPAGSMPIPDGPAQAWIVADMDTGAVLA 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
+ PAS K++ A VV L I ++ + + + G T T
Sbjct: 61 ARDEHGHFAPASTIKVLLAMVVLDE-----LPLDATIVANEADTLVECNCAGVTPGRTYT 115
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--VQH 161
L+ L++ S ND A +A L + ++ MN + LG T+ + G+
Sbjct: 116 TRQLLEALLLVSGNDAANTLATMLGGRDVAVMK-MNAKAATLGAYGTNAGSPSGIDGPGI 174
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIK---GLEIKGKKYPNTNWAVGTFLGADGMKT 218
++T RD+A++ D Q + N + + + G G KT
Sbjct: 175 DIWSTPRDLAVIFRAAMADPVFAQIVAQPTAVFPAKTGDVVLVNQDELLHRYPGTFGGKT 234
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFY 265
G+T + V A + + L+ ++ T +A+LL GF
Sbjct: 235 GYTDLARKTFVGGAARNGRHLVVALMYGLVKEGGPTYWDQAAALLDWGFA 284
>gi|302557055|ref|ZP_07309397.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
Tu4000]
gi|302474673|gb|EFL37766.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
Tu4000]
Length = 381
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/262 (19%), Positives = 88/262 (33%), Gaps = 19/262 (7%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P + + D TG V A + PAS K + A V L
Sbjct: 58 PGAPEVPEVSALSWLVADARTGDVPAAHDAHRRLPPASTLKTLFALTVLPALPAGI---- 113
Query: 78 TPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+S+ P S+ + L + S+ + AV + +L +
Sbjct: 114 -RHRVSERELADIGPGSSLVGVAEDRAYRVSDLWNGVFLSSGNDAVRVLATLSGGWRATA 172
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD----FPQYMHYFQIK 191
+ M ++ LG T + G G ++A D+A+ + H +
Sbjct: 173 ERMQAEARALGARDTRVKSPDGYDTPGQVSSAFDLAVFGRAGLRNAEFARYCARHEARFP 232
Query: 192 GLEIKGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ NTN V + G G+K G+T +G +VA+A + +L+ ++
Sbjct: 233 ARDGGSFGIVNTNRLLTGADGVEAYDGLVGIKNGYTSNAGNTLVAAARRDGHTLVVTVMN 292
Query: 246 ALDRNTR--NKVSASLLSMGFY 265
+ + SLL GF
Sbjct: 293 PQSGGGHAVYEEARSLLDWGFE 314
>gi|257437711|ref|ZP_05613466.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium
prausnitzii A2-165]
gi|257200018|gb|EEU98302.1| putative D-alanyl-D-alanine carboxypeptidase [Faecalibacterium
prausnitzii A2-165]
Length = 429
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 70/343 (20%), Positives = 130/343 (37%), Gaps = 22/343 (6%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ + I N+ L + + I E D ASLTK+MTA + K
Sbjct: 24 ILPGLAAYEMPIQTVNEGESVYLFNADIDKPILEQNADQQRYIASLTKMMTALLFLESGK 83
Query: 71 EKKAMLTTPITISKNASEYP---PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+ A +T P ++++ + S + G T+ + L L+V SAND A AIA +
Sbjct: 84 DMNAEITIPASLTQEFKDIQNANGSTINLRIGETVRRIDLLYGLLVASANDAASAIASDV 143
Query: 128 CKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ FV MN +K LG ++T F HG+ +G+ ++A D+A+++ +
Sbjct: 144 SDGDLTAFVARMNQRAKELGCTSTSFTCVHGLYDYGNVSSAHDLALIAKACAENETYMQV 203
Query: 187 YFQIKGLEIKGKKYPNT----------NWAVGTF-LGADGMKTGFTCASGFNIVASAIQG 235
+ + N N + GMKTGFT +G V A +
Sbjct: 204 ANTLSYTLPATNLHQNERTITSTNLMLNPEYPYYRDYIRGMKTGFTTLAGRCYVTFAQKD 263
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPN 291
+ V+LG+ D + + ++ +L F + +DR+ ++ + EV
Sbjct: 264 GHTYGLVVLGS-DLDNIYREASEILDWAFASFSDRELVDTETPLTTAPLKKCRSYEEVEL 322
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + + +++ + +L
Sbjct: 323 YAAAPVSGYGHAD--DKVTFTYNLQKNISATVKDGAVLGTATV 363
>gi|222111139|ref|YP_002553403.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Acidovorax
ebreus TPSY]
gi|221730583|gb|ACM33403.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
ebreus TPSY]
Length = 360
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 98/248 (39%), Gaps = 10/248 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+S K ++D +T V+ ASLTKLMT +V +
Sbjct: 100 VSDPLDLKSSVALVIDQDTKEVLLSKNDHAVLPIASLTKLMTGLLVSEA----HLPMDEL 155
Query: 80 ITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
ITI+++ + S S G+T++ L L ++ S N A A+ + FV M
Sbjct: 156 ITITQDDVDTEKGSGSRLAVGTTLSRGELLHLALMSSENRAAHALGRTFPGGLDTFVARM 215
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +K LG++ T F+ G+ ++A D+A L D
Sbjct: 216 NAKAKLLGMADTRFVEPTGLSSRNQ-SSAHDLATLVNVAHGDALLRELSTSPSHEVAIGR 274
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ +Y NTN V + G KTG+ +G +V A + LI V L + + +R
Sbjct: 275 RTLQYNNTNRLVKSPSWDIGLQKTGYISEAGRCLVMQAEVAGRKLIMVFLDSAGKFSRLG 334
Query: 255 VSASLLSM 262
+ + S
Sbjct: 335 DAERVRSW 342
>gi|121594143|ref|YP_986039.1| murein-DD-endopeptidase [Acidovorax sp. JS42]
gi|120606223|gb|ABM41963.1| murein-DD-endopeptidase [Acidovorax sp. JS42]
Length = 360
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 60/248 (24%), Positives = 98/248 (39%), Gaps = 10/248 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+S K ++D +T V+ ASLTKLMT +V +
Sbjct: 100 VSDPLDLKSSVALVIDQDTKEVLLSKNDHAVLPIASLTKLMTGLLVSEA----HLPMDEL 155
Query: 80 ITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
ITI+++ + S S G+T++ L L ++ S N A A+ + FV M
Sbjct: 156 ITITQDDVDTEKGSGSRLAVGTTLSRGELLHLALMSSENRAAHALGRTFPGGLDTFVARM 215
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +K LG++ T F+ G+ ++A D+A L D
Sbjct: 216 NAKAKLLGMADTRFVEPTGLSSRNQ-SSAHDLATLVNVAHGDALLRELSTSPSHEVAVGR 274
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ +Y NTN V + G KTG+ +G +V A + LI V L + + +R
Sbjct: 275 RTLQYNNTNRLVKSPSWDIGLQKTGYISEAGRCLVMQAEVAGRKLIMVFLDSAGKFSRLG 334
Query: 255 VSASLLSM 262
+ + S
Sbjct: 335 DAERVRSW 342
>gi|148653230|ref|YP_001280323.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Psychrobacter
sp. PRwf-1]
gi|148572314|gb|ABQ94373.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Psychrobacter
sp. PRwf-1]
Length = 344
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/252 (20%), Positives = 95/252 (37%), Gaps = 19/252 (7%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF--LKEKKAMLTT 78
S+ + +LD TG + + D AS+TK+MTA VV ++ L
Sbjct: 91 SLPISTGSRGVIVLDVETGKPLYQKNADVARPIASITKIMTAMVVLDAGLDMREEIKLDP 150
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++S K G M L + ++KS N A ++A + F++ M
Sbjct: 151 EDFVGPKR-----ASSRLKSGDRMNRAELLLMALMKSENPAAKSLARNYPGGYDAFMRAM 205
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +++LG+++ F + G+ + + ++ + + K +
Sbjct: 206 NAKARSLGMTSAFFGDPTGLDKRNVASPVDLAKMVQA--AGQYEVIRRFSTTKNYDFYVA 263
Query: 199 KYPNTNWAVGTFLG----------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
Y N KTGF +G +V ++ I VILGA +
Sbjct: 264 NYSAGNRPYPANNTSKLVRSGTYPIGISKTGFINEAGQCVVMETRVNNKPAIIVILGADN 323
Query: 249 RNTRNKVSASLL 260
NTR + ++L
Sbjct: 324 SNTRWNDAETIL 335
>gi|169823800|ref|YP_001691411.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
gi|167830605|dbj|BAG07521.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
Length = 394
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 76/352 (21%), Positives = 151/352 (42%), Gaps = 20/352 (5%)
Query: 1 MR--QFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+ + ++ + + + P LS A +K+ Y ++ + + + P
Sbjct: 1 MKSIKKIIPLMLVLAIVFQPALSKADSKLGFEDKVKAYYTIEQDYSQELLNYNENKPLAI 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
ASLTK+MT +V + K L I I ++ S KKG +T+++ ++ +++
Sbjct: 61 ASLTKIMTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGEELTVNDLIRGMMI 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMA 171
S ND A +A + KFV+ MN + L L + F +A G + +A+D+A
Sbjct: 121 VSGNDAADELAVKSEGSVGKFVERMNKKAAELELESAKFYSASGYPENDKENLMSAKDLA 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIV 229
L+ ++PQ ++Y + + L + +KY T +G G DG KTG T +G+ ++
Sbjct: 181 KLTTYTINNYPQVLNYTKTQKLVMPSRKYEAATTIPFLGKIEGVDGFKTGTTEKAGYCLI 240
Query: 230 ASA----IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285
+ +++V++GA + RN +L + +N + +
Sbjct: 241 TTMSLKPNNPKNKVVSVLMGAPTKYDRNTYQKIMLEYVRNSFEPMNILNS--EKPIETKS 298
Query: 286 SNEVPNISEEVCTTQKEIINYNTQM---KEAKDKESHFIDFEKITLLKNKIT 334
+ V + E+ T+ I YN + ++ K+ +K ++ I
Sbjct: 299 VDSVVDKKVEIYPTEDVSILYNNKTGLQQKVDIKKDLKAPLKKGQVVGKVII 350
>gi|322833771|ref|YP_004213798.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rahnella sp.
Y9602]
gi|321168972|gb|ADW74671.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Rahnella sp.
Y9602]
Length = 310
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 12/252 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P ++ ++D + VI PD ASLTKLMTA V L
Sbjct: 30 PAVAPIVQIASGSAMVVDLKSHEVIYSRNPDEVRPIASLTKLMTAMVTLDA----NLPLD 85
Query: 78 TPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
I I N E S K S +T ++L ++ S N A ++A F+
Sbjct: 86 EVINIDISNTPEMRGVFSRVKLNSEITRRQMIQLALMSSENRAAASLAAHYPGGYSAFIN 145
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIK 191
MN +K+LG++ TH+ G+ + +TARD+ L + + +
Sbjct: 146 AMNAKAKSLGMTHTHYAEPTGL-SPRNVSTARDLTRLLLASQRYPLIGQLSTTAEKTAVF 204
Query: 192 GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ NTN + KTG+T +G + + + V++ A +
Sbjct: 205 SHPAYALPFRNTNHLIMNPSWNIQLTKTGYTDEAGHCLAMRTTINGKPVTLVVMDAFGKF 264
Query: 251 TRNKVSASLLSM 262
T + L +
Sbjct: 265 TAFADANRLRTW 276
>gi|303235381|ref|ZP_07321998.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
BVS033A4]
gi|302493502|gb|EFL53291.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
BVS033A4]
Length = 394
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 76/352 (21%), Positives = 151/352 (42%), Gaps = 20/352 (5%)
Query: 1 MR--QFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
M+ + ++ + + + P LS A +K+ Y ++ + + + P
Sbjct: 1 MKSIKKIIPLMLVLAIVFQPALSKADSKLGFEDKVKAYYTIEQDYSQELLNYNENKPLAI 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
ASLTK+MT +V + K L I I ++ S KKG +T+++ ++ +++
Sbjct: 61 ASLTKIMTYVLVMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGEELTVNDLIRGMMI 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMA 171
S ND A +A + KFV+ MN + L L + F +A G + +A+D+A
Sbjct: 121 VSGNDAADELAVKSEGSVGKFVERMNKKAAELELESAKFYSASGYPENDKENLMSAKDLA 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIV 229
L+ ++PQ ++Y + + L + +KY T +G G DG KTG T +G+ ++
Sbjct: 181 KLTTYTINNYPQVLNYTKTQKLVMPSRKYEAATTVPFLGKIEGVDGFKTGTTEKAGYCLI 240
Query: 230 ASA----IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNL 285
+ +++V++GA + RN +L + +N + +
Sbjct: 241 TTMSLKPNNPKNKVVSVLMGAPTKYDRNTYQKIMLEYVRNSFEPMNILNS--EKPIETKS 298
Query: 286 SNEVPNISEEVCTTQKEIINYNTQM---KEAKDKESHFIDFEKITLLKNKIT 334
+ V + E+ T+ I YN + ++ K+ +K ++ I
Sbjct: 299 VDSVVDKKVEIYPTEDVSILYNNKTGLQQKVDIKKDLKAPLKKGQVVGKVII 350
>gi|49481069|ref|YP_039030.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
carboxypeptidase) [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49332625|gb|AAT63271.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
carboxypeptidase) [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 279
Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/269 (21%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPSITGQYAITIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+A+++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|239980721|ref|ZP_04703245.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
Length = 313
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/276 (23%), Positives = 110/276 (39%), Gaps = 19/276 (6%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D ++G + D AS TK M VV T +
Sbjct: 41 KVSAKGAFLMDASSGKTVFSKSADTKRQMASTTKTMAVAVVLDTKGVNLDKKVTVKQTYR 100
Query: 85 NASEYPPSNS-TFKKGSTMTLDNALKLLIVKSANDIAVAIAESL------CKTEKKFVQH 137
+ +++ + G +T+ L ++ S D A A+A++ K F+
Sbjct: 101 DYVAKNGASTADLRTGDKLTVRQLLYGTMLPSGCDAAYALADTFGSGSTVSARTKSFISK 160
Query: 138 MNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYM--------HYF 188
MN +K+LG++ T F + G+ +Y+T RD+A L+ +
Sbjct: 161 MNAKAKSLGMTNTKFDSFDGISKAGNNYSTPRDLAKLARHAMKNSTFKTVVKAASTKQKA 220
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
KG + + NTN +G++ GA G KTG A+G ++ SA + +SL+ VIL
Sbjct: 221 TAKGGGTRTYTWYNTNKLLGSYKGATGAKTGTGTAAGPCLIFSATKNGKSLVGVILN--- 277
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
+ R + +L GF KT + QQ+
Sbjct: 278 DSNRYADAGKMLDYGFGKKTTSTLKVKPLPQGAQQD 313
>gi|297201047|ref|ZP_06918444.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
29083]
gi|197712169|gb|EDY56203.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
29083]
Length = 277
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/278 (20%), Positives = 106/278 (38%), Gaps = 22/278 (7%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + A + +++ G + D + S TK+MTA VV
Sbjct: 1 MLTAGAFTAAPAQAVTAPSIVAKGGYVMNNANGKTLYTKAADTKRSTGSTTKIMTAKVVL 60
Query: 67 SFLKEKKAMLTTPITI----SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ L +TI S S + G +T+ L L++ S D A A
Sbjct: 61 AQS---NLNLDKKVTIQKAYSDYIVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYA 117
Query: 123 IAESLCK------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
+A++ K F+ MN + +LGL THF + G+ +Y+T RD+ ++
Sbjct: 118 LADTYGTGSTRAARVKSFISKMNQAATSLGLRNTHFDSFDGIGNGNNYSTPRDLTKIASS 177
Query: 177 IKTDFPQYM---------HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ G + NTN + ++ G G+KTG + +
Sbjct: 178 AMKNATFRTVVKTKKYTAKTITKTGSTRTMAPWTNTNGLLSSYSGTIGVKTGSGPEAKYC 237
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+V +A + +++I +L + R + LL+ GF
Sbjct: 238 LVVAATRNGKTVIGTVLASTSITQREADAKKLLNYGFA 275
>gi|113867401|ref|YP_725890.1| D-alanyl-D-alanine carboxypeptidase [Ralstonia eutropha H16]
gi|113526177|emb|CAJ92522.1| D-Alanyl-D-alanine carboxypeptidase [Ralstonia eutropha H16]
Length = 380
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 8/244 (3%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
A + ++D N+ V+ + AS+TKLMTA VV + + +TI
Sbjct: 102 ALALRSSVALVMDQNSNEVLFQKNASAVLPIASITKLMTALVVMDA----RLPMDEVLTI 157
Query: 83 SKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
S+ + + + + + +T L L ++ S N A A+ + FVQ MN
Sbjct: 158 SEEDRDTEKHSGSRLRFGTQLTRQELLLLALMSSENRAASALGRNYPGGLPAFVQAMNRK 217
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKK 199
++ LG++ +HF+++ G+ + + +++ + + + + + +
Sbjct: 218 ARELGMNDSHFVDSSGLSSSNVSSATDLVRMVNAAYRNPTIREFSTQTEHEVNVLGRTQH 277
Query: 200 YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
Y +TN V G KTGF +G +V A ++++ V L + + +R +
Sbjct: 278 YVSTNRLVRGGNWEIGLQKTGFISEAGQCLVMQAKVQGRNVVMVFLDSAGKLSRFADANR 337
Query: 259 LLSM 262
+
Sbjct: 338 VKDW 341
>gi|300779711|ref|ZP_07089567.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
genitalium ATCC 33030]
gi|300533821|gb|EFK54880.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
genitalium ATCC 33030]
Length = 434
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 53/262 (20%), Positives = 99/262 (37%), Gaps = 17/262 (6%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
E + + D +TG VIA P + PAS+ K++ A V L +T+S
Sbjct: 118 EAVVSAAWLVADVDTGDVIAMKDPHGRYRPASIIKVLLALVAIDE-----LPLDKKVTVS 172
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ ++ S G T+++ L L++ S ND + A+A+ L ++ ++ +N ++
Sbjct: 173 EESAGQEGSAVGIGAGGEYTINDLLHGLLMVSGNDASHALAQEL-GGDQATLEKINAKAR 231
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---------- 193
L L T+ + G+ G T+A DM + +
Sbjct: 232 ELNLRDTYAASYSGLDAPGMSTSAWDMGLAYRVAYENGTFANIIKTEMYPFPGYIAADGT 291
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR- 252
+ N N G KTG+T + V + + + L+AV+L R
Sbjct: 292 VFEPFDVYNDNHLYLNDPDGIGGKTGYTDDAHHTFVGALDRDGRRLMAVVLDTTADEARA 351
Query: 253 NKVSASLLSMGFYNKTDRKKIN 274
+ + LL + + +
Sbjct: 352 WEQAQRLLHESYRFTSSEAVAS 373
>gi|304312179|ref|YP_003811777.1| Probable D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
HdN1]
gi|301797912|emb|CBL46134.1| Probable D-alanyl-D-alanine carboxypeptidase [gamma proteobacterium
HdN1]
Length = 394
Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/244 (18%), Positives = 92/244 (37%), Gaps = 8/244 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D +TG ++ + AS+TKLMTA VV + +LT
Sbjct: 134 PGLQSRAALVMDADTGEILYGKNSNETVPIASITKLMTAIVVLDAGQSMHEILTITN--- 190
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ S+S + G+ + + L ++ S N A A+ + + ++ MN +
Sbjct: 191 DDVDTLRHSSSRLRVGTRLPRGEMMHLALMSSENRAASALIRNYPGGLQAGLRAMNAKAA 250
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKK 199
LG++++HF + G+ + ++ + + +
Sbjct: 251 ELGMTSSHFYDGTGLNGGNRASLFDLAKMVKAANTYPEIHDYSTSSSAMVSVAGYRNQLR 310
Query: 200 YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
Y NTN V G KTG+ +G +V A G + + V++ + TR +
Sbjct: 311 YVNTNPLVNNSGWDIGVTKTGYIREAGKCLVMQARIGATNTVLVLMDSWGAQTRVGDANR 370
Query: 259 LLSM 262
+
Sbjct: 371 VKHW 374
>gi|126650121|ref|ZP_01722354.1| DacB [Bacillus sp. B14905]
gi|126593293|gb|EAZ87255.1| DacB [Bacillus sp. B14905]
Length = 348
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 77/361 (21%), Positives = 141/361 (39%), Gaps = 52/361 (14%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + +L I P S A Y +LD +TG V+ + + ASLTK+ TA V
Sbjct: 1 MLMIIVLMVILPQTSFARG--GSGYAVLDGDTGRVLIGSNSNERLPIASLTKIWTALVAI 58
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L + IS A+ S+ + G T+T++ L L+++S ND A A+AE
Sbjct: 59 ENSD-----LQEEVVISPKAAMAEGSSIYLQAGETVTVETLLYGLMLRSGNDAATALAEH 113
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQY 184
+ + + FV+ MN + GL+ T FMN G+ H ++ARD A + + F +
Sbjct: 114 VGGSVEGFVKLMNERAVIAGLTNTVFMNPSGLHHEDHLSSARDTAEMLRVALQNKTFEKI 173
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLG----------------------ADGMKTGFTC 222
+ + G + N + + G A KTGFT
Sbjct: 174 ASTVLYRANTVNGMLWENKHRLLREGSGMAAEIDDETEQPVSSLKSATGVAYAGKTGFTK 233
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+G + + + Q+ I V L D + + +++ +Y ++ +
Sbjct: 234 VAGRTLATAFQKDGQTCIVVTLNVSDDWNVH-----------RSFSNQVWTDYDLETVVK 282
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQM----------KEAKDKESHFIDFEKITLLKNK 332
+ N ++ + + +N + K + S F+ E+I + K
Sbjct: 283 KGKYNVNKKLAIRLEEPVRLQLNKEEKAQVRQVLHVSRKRQEAVLSIFLGEERIYAIPVK 342
Query: 333 I 333
+
Sbjct: 343 V 343
>gi|227515412|ref|ZP_03945461.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
ATCC 14931]
gi|227086216|gb|EEI21528.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
ATCC 14931]
Length = 417
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 73/372 (19%), Positives = 142/372 (38%), Gaps = 43/372 (11%)
Query: 1 MRQF----------LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHP 50
MR+ +V + ++ + + T +D TG V+ E
Sbjct: 1 MRKLRRVCFHLLLVVVTFTTVLATSAGAVANASSTVDARAAITIDAETGQVLYEKNATKR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDN 106
+ AS+ K+ T V+ +++ K I ISK +++ SN +G + T+ +
Sbjct: 61 YPIASVIKIRTLAVIEQDIEQGKLKWDQKIKISKEVAKVANDWRFSNVQLNEGESYTVKS 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG---- 162
++ +++ SA+ A A+A + + F Q M +K G++ N G+
Sbjct: 121 LVESMMIVSADGSAEALALASAGSTAAFNQKMQAVAKEAGVTDAKIYNMIGLANGDLGEM 180
Query: 163 ----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAV 207
+ +A+D+A ++ + +P + + K + + + N N +
Sbjct: 181 RLKNVSKKAENQLSAKDVAKIARYLVEKYPSVLEITKQKFVNFQVSDSQQYEMVNINSML 240
Query: 208 GTFL------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLL 260
DG+KTG T +SG+ V + + LI V+L N + KV+ +++
Sbjct: 241 PQNAAASTHGEVDGLKTGMTDSSGYCFVGTGTFNGRRLITVVLKVPGEYNNQFKVTDAMI 300
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ DF + S V + ++ T + T + AK+
Sbjct: 301 GQVLDKYQYLTVNK--LSDFKKGVQSVTVAHAEKKGPKTVGLTLKKATTLWLAKNTSLKK 358
Query: 321 IDFEKITLLKNK 332
D E I L KNK
Sbjct: 359 ADVELI-LDKNK 369
>gi|15835453|ref|NP_297212.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum
Nigg]
gi|7190867|gb|AAF39639.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum
Nigg]
Length = 438
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 67/364 (18%), Positives = 129/364 (35%), Gaps = 48/364 (13%)
Query: 1 MRQF-----LVIIAMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNP 53
MR I + + L+ + ++ ++G ++ E D P
Sbjct: 1 MRILSLLCRFFICSSPLFLQPASLLAASPAITTKGLAAAVMHADSGAILKEKNLDQKIFP 60
Query: 54 ASLTKLMTAYVVFSFL-----KEKKAMLTTPITISKNASEYPPSNSTFKK---------- 98
AS+TK+ TA ++ + +I+ A + S
Sbjct: 61 ASMTKIATALLILRKHPDVLTRFITIRREPLTSITPQAKQQSGYRSPPHWLETDGVAIQL 120
Query: 99 --GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
++ + L++ SAND A +A++ C++ F+ +N+ K +G THF + H
Sbjct: 121 KSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFMHQLNDFLKEIGCQNTHFNSPH 180
Query: 157 GVVQHGHYTTARDMAILSWRIK-----TDFPQYMHYFQIKGLEIKGKKYPNTNW-----A 206
G+ HYTTARD+AI+ + Y + +TN +
Sbjct: 181 GLHHPDHYTTARDLAIIMKEALKEPLFCQVIRTASYTMESTNLSPERTLSSTNRLLSSSS 240
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSAS----LLS 261
+ G KTG T ++G NIV +A + ++S+I V G + + + L +
Sbjct: 241 TYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAAGYFGPAAQLYQDAIAVCEDLFN 300
Query: 262 ----MGF-----YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
F + + K I Q + P+ + + + E +++
Sbjct: 301 EQLLRCFLLPPASQYSVKTKFGPITAPVSQGIYYDFYPSEGDPLLSLSLESSKIAFPIRQ 360
Query: 313 AKDK 316
Sbjct: 361 GDLL 364
>gi|320176628|gb|EFW51670.1| Murein-DD-endopeptidase [Shigella dysenteriae CDC 74-1112]
Length = 297
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 10/245 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI N+PD AS++KLMTA VV L I+ +
Sbjct: 23 PEIASGSVMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQT 82
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + S ++ + L L ++ S N A ++A K F++ MN +K
Sbjct: 83 PE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAK 139
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGK 198
+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 140 SLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTL 198
Query: 199 KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN V KTGFT A+G +V + ++ + V++ A + T ++
Sbjct: 199 PFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADAS 258
Query: 258 SLLSM 262
L +
Sbjct: 259 RLRTW 263
>gi|293400361|ref|ZP_06644507.1| putative D-alanyl-D-alanine carboxypeptidase [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306761|gb|EFE48004.1| putative D-alanyl-D-alanine carboxypeptidase [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 416
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 70/353 (19%), Positives = 128/353 (36%), Gaps = 25/353 (7%)
Query: 1 MRQFLVIIAMAMLSNIF---------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
MR+ + + ++ + +IA T K +++ +T ++
Sbjct: 1 MRKLFLSMLLSCFLVMNMNVLHAKENTQDTIAATLKSKDVIVMNRDTKEILFAKNIKKRI 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS+TK+MTA VV K ++ + +K + + G M + +AL +
Sbjct: 61 YPASMTKIMTAIVVIENTKHFDKIVEAVPSDTKVIRDEASI-AGLLIGERMRIQDALSCM 119
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ S +D A +A K FV MNN +K L L THF N +G HYTT +DMA
Sbjct: 120 MLASGSDAAKMLARYTTGNTKDFVDLMNNKAKELHLQDTHFTNVYGKYDKQHYTTVKDMA 179
Query: 172 ----ILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLGADGMKTGFTC 222
+IK + Y + A G K+G
Sbjct: 180 LLMDYAMENPIFQKIVASDQVKIKTNAFEERIAENFVYATFDKAKLDHSYITGAKSGSMD 239
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNK---VSASLLSMGFYNKTDRKKINYIIKD 279
+G N+ ++A + + ++ V A +A L F N +
Sbjct: 240 ETGLNLASTAEKDGRRVVIVSAEAPIDEKHTNHVVDAAHLYQWYFTNYQKKIIYKKGDTV 299
Query: 280 FYQQNL---SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ N+ S V S+ + + N + + +++ + + +L
Sbjct: 300 AIKGNILTPSFHVALPSDIYIEAPQGVFNAYEKTFVSTNQKMIVKPNDVVGIL 352
>gi|289809759|ref|ZP_06540388.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 278
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 59/245 (24%), Positives = 98/245 (40%), Gaps = 10/245 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI N+PD AS+TKLMTA VV +L I+ +
Sbjct: 23 PEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLPLDEILKVDISQT 82
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + S ++ N L L ++ S N A ++A F++ MN +K
Sbjct: 83 PE---MKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAK 139
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGK 198
LG++ T F+ G+ + +TARD+ L + +
Sbjct: 140 ALGMTHTRFVEPTGL-SIHNVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTL 198
Query: 199 KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN V KTGFT A+G +V + ++ + V++ A + T ++
Sbjct: 199 PFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADAS 258
Query: 258 SLLSM 262
L +
Sbjct: 259 RLRTW 263
>gi|169827289|ref|YP_001697447.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus sphaericus
C3-41]
gi|168991777|gb|ACA39317.1| Penicillin-binding protein 5* precursor (D-alanyl-D-alanine
carboxypeptidase) [Lysinibacillus sphaericus C3-41]
Length = 348
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 79/353 (22%), Positives = 138/353 (39%), Gaps = 36/353 (10%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + +L I P S A Y +LD TG V+ + + ASLTK+ TA V
Sbjct: 1 MLMIIVLMVILPQSSFARG--GSGYAVLDGETGRVLIGSNSNERLPIASLTKIWTALVAI 58
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L + IS A+ S+ + G T+T++ L L+++S ND A A+AE
Sbjct: 59 ENSD-----LQEEVVISPKAAMAEGSSIYLQAGETVTVETLLYGLMLRSGNDAATALAEH 113
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQY 184
+ + + FV+ MN + GL+ T FMN G+ H ++ARD A + + F +
Sbjct: 114 VGGSVEGFVKLMNERAVIAGLTNTVFMNPSGLHHEEHLSSARDTAEMLRVALQNKTFEKI 173
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLG----------------------ADGMKTGFTC 222
K + G + N + + G A KTGFT
Sbjct: 174 ASTVLYKANTVNGMLWENKHRLLREGSGMAAEIDDETEQPVSSLKSATGVAYAGKTGFTK 233
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+G + + + Q+ I V L D V S + + + + + +
Sbjct: 234 VAGRTLATAFQKDGQTCIVVTLNESDD---WNVHRSFSNQVWRDYDLETVVKKGKYNVNK 290
Query: 283 QNLSNEVPNISEEVCTTQKEIIN--YNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ + ++ +KE + + K + S F+ E+I + K+
Sbjct: 291 KLAIRLEEPVRLQLNKEEKEQVRQVLHVSRKRQEAVLSIFLGEERIYAIPVKV 343
>gi|333026656|ref|ZP_08454720.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
Tu6071]
gi|332746508|gb|EGJ76949.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
Tu6071]
Length = 496
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/328 (15%), Positives = 100/328 (30%), Gaps = 50/328 (15%)
Query: 10 MAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TA 62
+A+ + A + + D +G ++A P PAS K++ T
Sbjct: 47 LALPGTQVAPGAGAPKLPKKLTARSWVVADAESGEILAARNPHWKLAPASTLKMLFADTL 106
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
FS K + L I + +S + L L+ AV
Sbjct: 107 LPKFSKDKVHQVTLKDLDGIGEGSSLVGIKEDLPYSVHDLWLGVFLRSGND------AVH 160
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ S+ + V+ M + L + TH + G G ++A D+ + + + P
Sbjct: 161 VLSSMNNGVAQTVRDMQARAHELQANDTHVVTPDGYDAKGQVSSAYDLTLFARDGLKN-P 219
Query: 183 QYMHYFQIKGLEI----------------------------KGKKYPNTNW------AVG 208
+ Y + + NTN +
Sbjct: 220 DFREYCSTAEAQFPGEFAKKKKDKDKKKATDGQAGPEQRPREHFGIQNTNRLLTGTYDLK 279
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG--ALDRNTRNKVSASLLSMGFYN 266
+ G G+K G T +G A A +GD+ L+ ++ + + +A LL GF
Sbjct: 280 PYQGIAGVKNGNTTNAGATYTAYAQRGDRKLLVTVMHPDYDESQAVYREAARLLDWGFAA 339
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISE 294
+ ++ + +
Sbjct: 340 DGKVTPVGELVPPRGVVAERAKASKEAA 367
>gi|227549943|ref|ZP_03979992.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227077959|gb|EEI15922.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 421
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/252 (21%), Positives = 100/252 (39%), Gaps = 12/252 (4%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
++ E + + D +TG V+A P + PAS+ K++ A V L +
Sbjct: 87 AVGEEVLASAWLVADLDTGEVVAMKDPHGRYRPASIIKVLLALVAIDE-----LPLDKQV 141
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
T+S ++ S + G T+++ L L++ S ND A A+A+ L ++ +Q +N
Sbjct: 142 TVSAESANMEGSAAGIGAGGVYTVNDLLHGLLMASGNDTAHALAQEL-GGDEATLQKVNA 200
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--- 197
++ LG++ T G+ + G ++A DMA+ +
Sbjct: 201 LAQQLGMNDTRVATYTGLDRPGMSSSAWDMALAYRAAFGNETFARIVDTQSYPFPGFDDL 260
Query: 198 --KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NK 254
+ N N G KTG+T + V + + L+AV+L R +
Sbjct: 261 PGFELWNDNALYLNDPEGIGGKTGYTDDANHTFVGAVNHDGRRLVAVVLDTTVNKARAWQ 320
Query: 255 VSASLLSMGFYN 266
+ LL +
Sbjct: 321 QAQQLLHESYRF 332
>gi|194289422|ref|YP_002005329.1| d-alanyl-d-alanine carboxypeptidase [Cupriavidus taiwanensis LMG
19424]
gi|193223257|emb|CAQ69262.1| putative D-Alanyl-D-alanine carboxypeptidase [Cupriavidus
taiwanensis LMG 19424]
Length = 378
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 49/244 (20%), Positives = 102/244 (41%), Gaps = 8/244 (3%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
A + ++D N+ V+ + AS+TKLMTA VV + + +TI
Sbjct: 102 ALALRSSVALVMDQNSNEVLFQKNASAVLPIASITKLMTALVVMDS----RLPMDEVLTI 157
Query: 83 SKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
++ + +S+ + + +T L L ++ S N A A+ FVQ MN
Sbjct: 158 TEEDRDTEKHSSSRLRFGTQLTRQELLLLALMSSENRAASALGRHYPGGLPAFVQAMNRK 217
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKK 199
++ LG++ +HF+++ G+ + + +++ + + + + + +
Sbjct: 218 ARELGMNDSHFVDSSGLSSSNVSSATDLVRMVNAAYRNPTIREFSTQTEHEVNVLGRTQH 277
Query: 200 YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
Y +TN V G KTGF +G +V A ++++ V L + + +R +
Sbjct: 278 YVSTNRLVRGGNWEIGLQKTGFISEAGQCLVMQARVQGRNVVMVFLDSAGKLSRFADANR 337
Query: 259 LLSM 262
+
Sbjct: 338 VKDW 341
>gi|205359523|ref|ZP_02830125.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205345065|gb|EDZ31829.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
Length = 302
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 59/245 (24%), Positives = 98/245 (40%), Gaps = 10/245 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI N+PD AS+TKLMTA VV +L I+ +
Sbjct: 23 PEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLPLDEILKVDISQT 82
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + S ++ N L L ++ S N A ++A F++ MN +K
Sbjct: 83 PE---MKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAK 139
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGK 198
LG++ T F+ G+ + +TARD+ L + +
Sbjct: 140 ALGMTHTRFVEPTGL-SIHNVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTL 198
Query: 199 KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN V KTGFT A+G +V + ++ + V++ A + T ++
Sbjct: 199 PFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTMINNKPVALVVMDAFGKYTHFADAS 258
Query: 258 SLLSM 262
L +
Sbjct: 259 RLRTW 263
>gi|167919694|ref|ZP_02506785.1| family S11 unassigned peptidase [Burkholderia pseudomallei BCC215]
Length = 362
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 12/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV LT
Sbjct: 101 TPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDSKSP----LTDQ 156
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ ++ + S GS ++ ++ L + ++ S N A A++ F+ M
Sbjct: 157 IDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAM 216
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K+LG++ THF N+ G+ + ++ARD+ + +P + + E+
Sbjct: 217 NAKAKSLGMTDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVNTG 274
Query: 199 K----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 275 KRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRF 334
Query: 254 KVSASLLSM 262
++ + +
Sbjct: 335 ADASRVRNW 343
>gi|254191392|ref|ZP_04897896.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pasteur 52237]
gi|254209371|ref|ZP_04915717.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei JHU]
gi|147750144|gb|EDK57215.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei JHU]
gi|157939064|gb|EDO94734.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pasteur 52237]
Length = 362
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 12/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV LT
Sbjct: 101 TPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDSKSP----LTDQ 156
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ ++ + S GS ++ ++ L + ++ S N A A++ F+ M
Sbjct: 157 IDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAM 216
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K+LG++ THF N+ G+ + ++ARD+ + +P + + E+
Sbjct: 217 NAKAKSLGMTDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVNTG 274
Query: 199 K----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 275 KRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRF 334
Query: 254 KVSASLLSM 262
++ + +
Sbjct: 335 ADASRVRNW 343
>gi|126455216|ref|YP_001066916.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106a]
gi|134277355|ref|ZP_01764070.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 305]
gi|167824963|ref|ZP_02456434.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9]
gi|217420719|ref|ZP_03452224.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
576]
gi|226195535|ref|ZP_03791123.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pakistan 9]
gi|242314261|ref|ZP_04813277.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106b]
gi|254184359|ref|ZP_04890949.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1655]
gi|254195825|ref|ZP_04902251.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei S13]
gi|254200295|ref|ZP_04906661.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei FMH]
gi|254258254|ref|ZP_04949308.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1710a]
gi|254297022|ref|ZP_04964475.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 406e]
gi|126228858|gb|ABN92398.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106a]
gi|134251005|gb|EBA51084.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 305]
gi|147749891|gb|EDK56965.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei FMH]
gi|157807411|gb|EDO84581.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 406e]
gi|169652570|gb|EDS85263.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei S13]
gi|184214890|gb|EDU11933.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1655]
gi|217396131|gb|EEC36148.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
576]
gi|225932495|gb|EEH28494.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pakistan 9]
gi|242137500|gb|EES23902.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106b]
gi|254216943|gb|EET06327.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1710a]
Length = 369
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 12/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV LT
Sbjct: 108 TPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDSKSP----LTDQ 163
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ ++ + S GS ++ ++ L + ++ S N A A++ F+ M
Sbjct: 164 IDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAM 223
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K+LG++ THF N+ G+ + ++ARD+ + +P + + E+
Sbjct: 224 NAKAKSLGMTDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVNTG 281
Query: 199 K----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 282 KRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRF 341
Query: 254 KVSASLLSM 262
++ + +
Sbjct: 342 ADASRVRNW 350
>gi|126439318|ref|YP_001059634.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 668]
gi|126218811|gb|ABN82317.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
668]
Length = 369
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 12/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV LT
Sbjct: 108 TPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDSKSP----LTDQ 163
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ ++ + S GS ++ ++ L + ++ S N A A++ F+ M
Sbjct: 164 IDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAM 223
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K+LG++ THF N+ G+ + ++ARD+ + +P + + E+
Sbjct: 224 NAKAKSLGMTDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVNTG 281
Query: 199 K----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 282 KRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRF 341
Query: 254 KVSASLLSM 262
++ + +
Sbjct: 342 ADASRVRNW 350
>gi|53723811|ref|YP_103337.1| D-alanyl-D-alanine endopeptidase [Burkholderia mallei ATCC 23344]
gi|76810679|ref|YP_334127.1| peptidase [Burkholderia pseudomallei 1710b]
gi|52427234|gb|AAU47827.1| D-alanyl-D-alanine endopeptidase, putative [Burkholderia mallei
ATCC 23344]
gi|76580132|gb|ABA49607.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b]
Length = 394
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 12/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV LT
Sbjct: 133 TPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDSKSP----LTDQ 188
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ ++ + S GS ++ ++ L + ++ S N A A++ F+ M
Sbjct: 189 IDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAM 248
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K+LG++ THF N+ G+ + ++ARD+ + +P + + E+
Sbjct: 249 NAKAKSLGMTDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVNTG 306
Query: 199 K----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 307 KRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRF 366
Query: 254 KVSASLLSM 262
++ + +
Sbjct: 367 ADASRVRNW 375
>gi|53719907|ref|YP_108893.1| peptidase [Burkholderia pseudomallei K96243]
gi|121599737|ref|YP_993538.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
SAVP1]
gi|126450244|ref|YP_001081045.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC
10247]
gi|237813026|ref|YP_002897477.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei MSHR346]
gi|238561630|ref|ZP_00441759.2| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei GB8 horse 4]
gi|52210321|emb|CAH36300.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243]
gi|121228547|gb|ABM51065.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
SAVP1]
gi|126243114|gb|ABO06207.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC
10247]
gi|237503680|gb|ACQ95998.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei MSHR346]
gi|238524246|gb|EEP87680.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei GB8 horse 4]
Length = 359
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 12/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV LT
Sbjct: 98 TPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDSKSP----LTDQ 153
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ ++ + S GS ++ ++ L + ++ S N A A++ F+ M
Sbjct: 154 IDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAM 213
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K+LG++ THF N+ G+ + ++ARD+ + +P + + E+
Sbjct: 214 NAKAKSLGMTDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVNTG 271
Query: 199 K----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 272 KRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRF 331
Query: 254 KVSASLLSM 262
++ + +
Sbjct: 332 ADASRVRNW 340
>gi|124386303|ref|YP_001029035.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC
10229]
gi|167000634|ref|ZP_02266445.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
PRL-20]
gi|167720361|ref|ZP_02403597.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98]
gi|167739353|ref|ZP_02412127.1| family S11 unassigned peptidase [Burkholderia pseudomallei 14]
gi|167816568|ref|ZP_02448248.1| family S11 unassigned peptidase [Burkholderia pseudomallei 91]
gi|167846481|ref|ZP_02471989.1| family S11 unassigned peptidase [Burkholderia pseudomallei B7210]
gi|167895058|ref|ZP_02482460.1| family S11 unassigned peptidase [Burkholderia pseudomallei 7894]
gi|167903445|ref|ZP_02490650.1| family S11 unassigned peptidase [Burkholderia pseudomallei NCTC
13177]
gi|167911694|ref|ZP_02498785.1| family S11 unassigned peptidase [Burkholderia pseudomallei 112]
gi|254177821|ref|ZP_04884476.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei ATCC
10399]
gi|254357958|ref|ZP_04974231.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
2002721280]
gi|124294323|gb|ABN03592.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei NCTC
10229]
gi|148027085|gb|EDK85106.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
2002721280]
gi|160698860|gb|EDP88830.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei ATCC
10399]
gi|243063443|gb|EES45629.1| putative D-alanyl-D-alanine endopeptidase [Burkholderia mallei
PRL-20]
Length = 363
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 12/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV LT
Sbjct: 102 TPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDSKSP----LTDQ 157
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ ++ + S GS ++ ++ L + ++ S N A A++ F+ M
Sbjct: 158 IDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAM 217
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K+LG++ THF N+ G+ + ++ARD+ + +P + + E+
Sbjct: 218 NAKAKSLGMTDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVNTG 275
Query: 199 K----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 276 KRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRF 335
Query: 254 KVSASLLSM 262
++ + +
Sbjct: 336 ADASRVRNW 344
>gi|120403175|ref|YP_953004.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
vanbaalenii PYR-1]
gi|119955993|gb|ABM12998.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Mycobacterium
vanbaalenii PYR-1]
Length = 278
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 11/242 (4%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ + D +TG V+A P + PAS K++ A V +++
Sbjct: 45 PAEAWLVADLDTGRVLASKNPYGTYAPASTIKVLLAMTVLDH-----LRPDNFARANESH 99
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ S + G T + +++ S ND A +A+ L MN + +G
Sbjct: 100 TRVECSCVGLQPGQAYTTAQLVAAILMVSGNDAANMLADMLGGQRVAV-AAMNRKAALVG 158
Query: 147 LSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+T + G+ TT D+A++ +P + GK N N
Sbjct: 159 ARSTRASSPSGLDGPGWESVTTPHDLAVIMRAAL-KYPLIAQIMRSPSAPFPGKTLHNQN 217
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
+ + G KTGFT + V +A +G++ L+ V + + LL GF
Sbjct: 218 ELLSRYPGDLAGKTGFTNLARKTYVGAAQRGNRRLVVVQMYGTG--DLYGHAIRLLDYGF 275
Query: 265 YN 266
Sbjct: 276 SQ 277
>gi|194449016|ref|YP_002046221.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194469108|ref|ZP_03075092.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194736053|ref|YP_002115257.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197262067|ref|ZP_03162141.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197300824|ref|ZP_02661392.2| D-alanyl-D-alanine endopeptidase (DD-endopeptidase) [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197361849|ref|YP_002141485.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198244375|ref|YP_002216252.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200387930|ref|ZP_03214542.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204929084|ref|ZP_03220227.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205353306|ref|YP_002227107.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205357645|ref|ZP_02572191.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205358255|ref|ZP_02654578.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205360216|ref|ZP_02681467.2| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|213584224|ref|ZP_03366050.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213647182|ref|ZP_03377235.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213852329|ref|ZP_03381861.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|194407320|gb|ACF67539.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194455472|gb|EDX44311.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194711555|gb|ACF90776.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197093325|emb|CAR58773.1| penicillin-binding protein 7 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197240322|gb|EDY22942.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197290536|gb|EDY29891.1| D-alanyl-D-alanine endopeptidase (DD-endopeptidase) [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197938891|gb|ACH76224.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199605028|gb|EDZ03573.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204321628|gb|EDZ06827.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205273087|emb|CAR38040.1| penicillin-binding protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205330584|gb|EDZ17348.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205335922|gb|EDZ22686.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205350646|gb|EDZ37277.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|261247382|emb|CBG25207.1| penicillin-binding protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|301158730|emb|CBW18242.1| penicillin-binding protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
Length = 302
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 59/245 (24%), Positives = 98/245 (40%), Gaps = 10/245 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI N+PD AS+TKLMTA VV +L I+ +
Sbjct: 23 PEIASGSAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLPLDEILKVDISQT 82
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + S ++ N L L ++ S N A ++A F++ MN +K
Sbjct: 83 PE---MKGVYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAK 139
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGK 198
LG++ T F+ G+ + +TARD+ L + +
Sbjct: 140 ALGMTHTRFVEPTGL-SIHNVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTL 198
Query: 199 KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN V KTGFT A+G +V + ++ + V++ A + T ++
Sbjct: 199 PFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADAS 258
Query: 258 SLLSM 262
L +
Sbjct: 259 RLRTW 263
>gi|253582538|ref|ZP_04859760.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium varium ATCC
27725]
gi|251835683|gb|EES64222.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium varium ATCC
27725]
Length = 378
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 70/348 (20%), Positives = 130/348 (37%), Gaps = 18/348 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN--------KLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ + ++ + ++ + + LL + G + D +
Sbjct: 1 MKKIINVLLLTIILASSTVFAKEVESEVVVKEEKPSYKAILLGDDKGKIYYSENIDEKYP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
ASLTK+MT V F L++ + I +SK +++ S K+G TL++ +K
Sbjct: 61 LASLTKMMTLMVTFDQLEKGSIKMKDKIKVSKKSAQTGGSRIPMKEGEVFTLEDLIKATA 120
Query: 113 VKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSAT-HFMNAHGVVQH----GHYTT 166
+ SAN+ A AIAE + KFV+ MN S +LGL F G+ G +
Sbjct: 121 IYSANNAAYAIAEYIGKGDVDKFVKMMNKKSIDLGLEKELEFYTPAGLPSDMTKKGMDSG 180
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKTGFTCASG 225
+ QYM +K I K N + G G+KTG G
Sbjct: 181 TTRGIYKLSLEAAKYSQYMDIASMKEATIHDGKLKIKNRNLLLGEEGIYGIKTGHHSKVG 240
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ-- 283
+NI + + + V++G R++ + + + RK + I
Sbjct: 241 YNISVLSDKESMQIFTVVVGGPTYKKRDESVLKKMEEFYEHYQFRKLTDKNIAIAKVPIF 300
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ E ++ + T + + ++ ++K + E +L
Sbjct: 301 SGDKEYADLYPDKSFTDILNKDSDIKISIKRNKGAI-APVEAGKVLGE 347
>gi|228936311|ref|ZP_04099110.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228823427|gb|EEM69260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 273
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/269 (21%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 9 FTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 68
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 69 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+A+++
Sbjct: 124 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITKEALKYP 183
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 184 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVGEKDGK 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 244 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 271
>gi|225568832|ref|ZP_03777857.1| hypothetical protein CLOHYLEM_04911 [Clostridium hylemonae DSM
15053]
gi|225162331|gb|EEG74950.1| hypothetical protein CLOHYLEM_04911 [Clostridium hylemonae DSM
15053]
Length = 348
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 61/249 (24%), Positives = 104/249 (41%), Gaps = 11/249 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
S+ P + P L+D +TG IA N D PASLTK+MTA + +
Sbjct: 76 SSASPLTVDLKNLYSPSAVLVDLDTGKTIAGNNSDDTIYPASLTKIMTAILAVEKTENLD 135
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
++T P +N S + F+ G + L + L +++ S + +A A+ + +E+
Sbjct: 136 EIITLPYDFFQNLYAEEASMAGFEPGEAVCLRDLLYGILLPSGAECCLAFADKIAGSEED 195
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG- 192
FV+ MN ++ LG+ T F N+ G+ HY+T D+A+L + + +
Sbjct: 196 FVKLMNKKAEALGMEHTQFCNSTGLHDDEHYSTVEDLALLLKYALGNDDFREAFTASRHS 255
Query: 193 ----------LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ N + A T G KTG+T +G + + A + I V
Sbjct: 256 TRPSAQHPGGFTFYSTMFENMSSAKVTGGEILGGKTGYTKEAGLCLASLADVNGKEYILV 315
Query: 243 ILGALDRNT 251
A +
Sbjct: 316 TAKADGNHD 324
>gi|290958013|ref|YP_003489195.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22]
gi|260647539|emb|CBG70644.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei
87.22]
Length = 492
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 49/294 (16%), Positives = 94/294 (31%), Gaps = 30/294 (10%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFLKEKKAM 75
+ + + + D +G V+A + PAS K++ T F+ E K +
Sbjct: 139 APVLPKGISARSWIVADAESGDVLAAHNAHWRLAPASTLKMLFADTLLPKFNKDDEHKVL 198
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
I +S + L L+ AV + ++ K+ V
Sbjct: 199 PADLAGIGAGSSMVGIKEDEKYTVHDLWLGVFLRSGND------AVHVLSAMNGGVKQTV 252
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
MN ++ L TH ++ G G ++A D+ + + + ++
Sbjct: 253 ADMNEHAEELQALDTHAVSPDGYDAKGQVSSAYDLTLFARSGLQKKDFREYCSTVRAKFP 312
Query: 196 KGKK-------------YPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
K NTN + ++ G G+K G T +G A +
Sbjct: 313 GETKKGKNGKKSRSSFEIQNTNRLLTGDSGLDSYQGIAGVKNGNTTNAGATFTGVAERDG 372
Query: 237 QSLIAVILGALD--RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
+ L+ ++ N K +ASLL GF + ++ +
Sbjct: 373 RVLLVTVMHPEKNEHNQVYKETASLLDWGFKASGKVTPVGELVPPKSAETSGGS 426
>gi|257066773|ref|YP_003153029.1| Serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii DSM
20548]
gi|256798653|gb|ACV29308.1| Serine-type D-Ala-D-Ala carboxypeptidase [Anaerococcus prevotii DSM
20548]
Length = 403
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 77/326 (23%), Positives = 139/326 (42%), Gaps = 25/326 (7%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS- 83
+ + Y + + G + E D ASLTKLMT +V + K L T +
Sbjct: 35 DDNVTAYLIGNQENGDIYYEKNADEALPMASLTKLMTFLLVRDAMDAGKIDLNTSVKADK 94
Query: 84 --KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ + + S K+ + +++ L+ LI S ND A +A+++ +E KF Q MN
Sbjct: 95 RAEELTSWEYSALGLKENESYSVEELLQGLIAVSGNDCAHLLAKTVAGSEDKFAQMMNQK 154
Query: 142 SKNLGLSATHFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+K+LGL++ + NA G+ + ++ARD+ LS I +P + Y + + I GK
Sbjct: 155 AKDLGLTSQKYYNASGIGTDDGKENKSSARDLFKLSSEIVKKYPDILRYSTMDEVNIPGK 214
Query: 199 KYPNT--NWAVGTFLGADGMKTGFTCASGFNIVASAIQ------GDQSLIAVILGALDRN 250
G G DG+KTG T +G+ +V + + I V++GA ++
Sbjct: 215 GIRKNSTIPLRGEIKGVDGLKTGTTDQAGYCLVTTTDMKELDGNDEFRTIGVVMGADQKD 274
Query: 251 TRNKVSASLLSMGFYNKT------DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
TR+ V + L+ + K ++ I + +Q P E + K+
Sbjct: 275 TRDSVMSDLIYYVSRYYSCEKVLDTNKSLDTIDEISAKQGYIELYPK--ENLSIISKDDK 332
Query: 305 NYNTQMKEAKDKESHFIDFEKITLLK 330
T++ K+ ++ +L
Sbjct: 333 KVATKI---SLKDKIKAPIKEGEVLG 355
>gi|206976429|ref|ZP_03237336.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
H3081.97]
gi|217962480|ref|YP_002341052.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH187]
gi|229141730|ref|ZP_04270260.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
gi|206745353|gb|EDZ56753.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
H3081.97]
gi|217066911|gb|ACJ81161.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH187]
gi|228641798|gb|EEK98099.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
Length = 279
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPSITGRYGITIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVITVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|323168727|gb|EFZ54407.1| D-alanyl-D-alanine endopeptidase [Shigella sonnei 53G]
Length = 298
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 10/245 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI N+PD AS++KLMTA VV L I+ +
Sbjct: 23 PEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQT 82
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + S ++ + L L ++ S N A ++A K F++ MN +K
Sbjct: 83 PE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAK 139
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGK 198
+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 140 SLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTL 198
Query: 199 KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN V KTGFT A+G +V + ++ + V++ A + T ++
Sbjct: 199 PFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADAS 258
Query: 258 SLLSM 262
L +
Sbjct: 259 RLRTW 263
>gi|302558857|ref|ZP_07311199.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
Tu4000]
gi|302476475|gb|EFL39568.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
Tu4000]
Length = 458
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 46/282 (16%), Positives = 91/282 (32%), Gaps = 26/282 (9%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + + + D +G V+A + PAS K++ A + +
Sbjct: 100 PVLPKGLSGRSWIVADAESGDVLAAHNAHWRLAPASTLKMLFADTLLPKWPK---TTEHK 156
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ S A S+ K + L L + + + AV + ++ K V MN
Sbjct: 157 VEPSDMAGIGSGSSMVGIKEDETYSVHDLWLGVFLRSGNDAVHVLSAMNGGVKNTVDEMN 216
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
++ L TH ++ G ++A D+ + + + Y +
Sbjct: 217 AHAEELQALDTHVVSPDGYDAPEQVSSAYDLTLFARSGMQK-KDFREYCSTVSAKFPGET 275
Query: 196 ----------KGKKYPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ NTN V + G G+K G T +G A + + L
Sbjct: 276 KKNKKGKKVRGSFEIQNTNRLLAGDYDVPVYQGIAGVKNGNTTNAGATFTGVAERDGKVL 335
Query: 240 IAVILGALD--RNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
+ ++ N K +A L GF + + ++
Sbjct: 336 LVTVMNPRTNESNEVYKETAKLFDWGFEAAGKVEPVGELVPP 377
>gi|317491244|ref|ZP_07949680.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316920791|gb|EFV42114.1| D-alanyl-D-alanine carboxypeptidase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 315
Score = 120 bits (300), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/254 (20%), Positives = 100/254 (39%), Gaps = 10/254 (3%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + ++D T +VI + PD AS+TKLMTA V
Sbjct: 32 APTTHNASSLVLASGSAMVVDLKTHNVIYSSNPDVQVPIASITKLMTAMVALDAKPAMDE 91
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+++ I +K S + GS ++ + + ++ S N A ++A F
Sbjct: 92 VISVDIHNTKEL---KGVFSRVRVGSEVSRRQMMLMALMSSENRAAASLAHHYPGGYNAF 148
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQ 189
++ MN +++LG++ T ++ G+ + +TARD+ L ++ + +
Sbjct: 149 IKAMNAKARSLGMTHTRYVEPTGL-SVKNVSTARDLTKLLAASKNYPLISQLSTTETQSV 207
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ + + NTN V A KTGFT +G + G + + V+L A
Sbjct: 208 TFSNPVYTETFNNTNHLVRNDKWAIQLTKTGFTNQAGHCLAMRTTIGGRQVALVVLDAFG 267
Query: 249 RNTRNKVSASLLSM 262
+ T + L
Sbjct: 268 KYTHFADANRLRDW 281
>gi|255281347|ref|ZP_05345902.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
DSM 14469]
gi|255268304|gb|EET61509.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
DSM 14469]
Length = 398
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 59/235 (25%), Positives = 95/235 (40%), Gaps = 9/235 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
P LLD TG ++AE PASLTK+MTA ++ + P I
Sbjct: 147 LYSPCAVLLDAGTGEMLAEKNGSAQMYPASLTKIMTALLLVEYCGNLDGTAWIPTDIYDQ 206
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + F G +TL + L +++ S + + A + +E+ FVQ MN + L
Sbjct: 207 LYAEGASVAGFLPGEEVTLRDLLYGILLPSGAECCLTAARYIAGSEESFVQIMNQRAAEL 266
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
G++ THF N+ G+ HY++A D+A L + + +++P
Sbjct: 267 GMTNTHFTNSTGLQDAQHYSSAEDIAALLQYALQNASFREAFTSEYYYVQPTQEHPEGFT 326
Query: 206 AVGT---------FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
T G KTG+T +G + + G + I V GA +
Sbjct: 327 FWSTLFSQAQASGDDRILGGKTGYTQEAGLCLASLLRVGGREYILVTAGAPGSHE 381
>gi|71065270|ref|YP_263997.1| murein-DD-endopeptidase [Psychrobacter arcticus 273-4]
gi|71038255|gb|AAZ18563.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Psychrobacter arcticus 273-4]
Length = 363
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 53/252 (21%), Positives = 95/252 (37%), Gaps = 19/252 (7%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF--LKEKKAMLTTP 79
I + ++D TG I E D AS+TK+MTA VV ++ L
Sbjct: 111 IPISTDSRSVAVIDAETGESIYEKDADIARPMASITKVMTAMVVLDAGLDMREELTLDPE 170
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ ++S K G + L + ++KS N A ++A + F++ MN
Sbjct: 171 DFVGPKR-----ASSNLKSGDRLNRAEMLLMALMKSENPAAKSLARNYPGGYSAFMRAMN 225
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ LG+S F + G+ + ++ D+ + ++ + K +
Sbjct: 226 RKAQELGMSTAFFGDPTGL-DKRNIASSNDLVKMVR-AAGNYDVIRRFSTTKSYDFFVSN 283
Query: 200 YPNTNWAVGTFLG----------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
Y + N KTGF +G +V ++ I VILGA
Sbjct: 284 YASGNRTYKANNTSSLVRDGSYPIGISKTGFINEAGRCVVMETRVNNRPAIIVILGANSS 343
Query: 250 NTRNKVSASLLS 261
TR + ++L+
Sbjct: 344 ATRWGDAKNILN 355
>gi|269127199|ref|YP_003300569.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Thermomonospora curvata DSM 43183]
gi|268312157|gb|ACY98531.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Thermomonospora curvata DSM 43183]
Length = 305
Score = 120 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 65/294 (22%), Positives = 124/294 (42%), Gaps = 17/294 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
R + ++ +L ++ + A K L + + S+
Sbjct: 8 RIIVPLVGATLLISVPAAPAAAAGAGPSGVKARSALLYEPAKRKIRWHRAGGTKRPIGSI 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK MTA VV K + + I A + S + + G +T L+ L++ S
Sbjct: 68 TKAMTAVVVLRSGKLDRKITIKQKHI-NYAVRHGGSMAHLRPGDKLTARQLLRALLLPSG 126
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH---YTTARDMAIL 173
D A +A++ + FV+ MN T++ L + TH+ N G+ Y+TA D L
Sbjct: 127 CDAAYVLADAYGPGWRNFVKKMNATARALNMKKTHYANFDGLPWPTPTAGYSTALDQTKL 186
Query: 174 SWRIKTDFPQYMHYFQIKGLE------IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ P++ + + + + NTN +G+F G +G+KTG+T A+G++
Sbjct: 187 ANYAFKKLPEFRKIVRTRTYRLKAGGGHRAYTWHNTNRLLGSFKGVNGVKTGYTSAAGYS 246
Query: 228 IVASAIQGDQSLIAVILGALDRN--TRNKVSASLLSMGFYNKTDRKKINYIIKD 279
++ +A +G ++LI +L + + R +A +LS GF + + +
Sbjct: 247 LLFAATRGKRTLIGAVLNSSTTDSTARFTDAARILSWGFGTAAPSRLVLAPLPP 300
>gi|152999492|ref|YP_001365173.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS185]
gi|160874112|ref|YP_001553428.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS195]
gi|217972168|ref|YP_002356919.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS223]
gi|304410998|ref|ZP_07392614.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
baltica OS183]
gi|307301879|ref|ZP_07581637.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
baltica BA175]
gi|151364110|gb|ABS07110.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
baltica OS185]
gi|160859634|gb|ABX48168.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
baltica OS195]
gi|217497303|gb|ACK45496.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
baltica OS223]
gi|304350533|gb|EFM14935.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
baltica OS183]
gi|306913917|gb|EFN44338.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
baltica BA175]
gi|315266344|gb|ADT93197.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Shewanella
baltica OS678]
Length = 321
Score = 120 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 53/281 (18%), Positives = 101/281 (35%), Gaps = 14/281 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + ++D T V+ + P+ AS+TKLMTA V K +
Sbjct: 45 APAKQQEVASSSAMVVDLKTNEVLYSSNPNAVVPIASVTKLMTAMVTLDA----KLAMDE 100
Query: 79 PITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ ++ + E S + GS ++ + L L ++ S N A ++A K F++
Sbjct: 101 KLAVNINDTKEMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKA 160
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN +K LG+ T ++ G+ + + + +L + + K +
Sbjct: 161 MNAKAKALGMKNTRYVEPTGLSYKNVSSASDLIVLLKASEGYPMLGQLSSTEKKTVTFAK 220
Query: 198 KKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+Y NTN V KTGFT +G +V + + V+L A + T
Sbjct: 221 PRYSLDFRNTNRLVYKDNWNIHLTKTGFTNEAGHCLVMRTEMAKRQVAFVVLDAYGKYTH 280
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ L + K + + ++
Sbjct: 281 IADANRLRNW----LETGKVTPIPAEAKQYKKQRSQQQLAK 317
>gi|91792455|ref|YP_562106.1| D-alanyl-D-alanine endopeptidase [Shewanella denitrificans OS217]
gi|91714457|gb|ABE54383.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Shewanella denitrificans OS217]
Length = 298
Score = 120 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 53/263 (20%), Positives = 101/263 (38%), Gaps = 10/263 (3%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+++ + + + L+D NT V+ + PD AS+TKLMTA V
Sbjct: 18 LVLGAILFCLSPHIYAAQQELASTSGMLVDLNTDEVLYASNPDRVMPIASVTKLMTAMVT 77
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+ ++ I +K GS ++ + L L ++ S N A ++A
Sbjct: 78 LDAKLPLEQKISIKINETKEMRNVYSRVRI---GSELSRKDMLLLALMSSENRAAASLAH 134
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTD 180
F++ MN+ +K LG++ + F+ G+ + ++ARD+ +L + + +
Sbjct: 135 HYPGGYAAFIRAMNDKAKALGMTKSSFVEPTGL-SRKNVSSARDLVMLLKASEGYPLLGE 193
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSL 239
+ N+N V KTGFT +G +V + +
Sbjct: 194 LSSTDKKTVTFSNPWYKLDFRNSNRLVFKNDWNIQLTKTGFTNDAGRCLVMRTEMNKRQV 253
Query: 240 IAVILGALDRNTRNKVSASLLSM 262
V+L A + T + L +
Sbjct: 254 AFVVLDAFGKLTHLADANRLRNW 276
>gi|126175583|ref|YP_001051732.1| D-alanyl-D-alanine endopeptidase [Shewanella baltica OS155]
gi|125998788|gb|ABN62863.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Shewanella baltica OS155]
Length = 321
Score = 120 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 53/281 (18%), Positives = 101/281 (35%), Gaps = 14/281 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + ++D T V+ + P+ AS+TKLMTA V K +
Sbjct: 45 APAKQQEVASSSAMVVDLKTNEVLYSSNPNAVVPIASVTKLMTAMVTLDA----KLAMDE 100
Query: 79 PITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ ++ + E S + GS ++ + L L ++ S N A ++A K F++
Sbjct: 101 KLAVNINDTKEMRGVYSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGHKAFIKA 160
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN +K LG+ T ++ G+ + + + +L + + K +
Sbjct: 161 MNAKAKALGMKNTRYVEPTGLSYKNVSSASDLIVLLKASEGYPMLGQLSSTEKKTVTFAK 220
Query: 198 KKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+Y NTN V KTGFT +G +V + + V+L A + T
Sbjct: 221 PRYSLDFRNTNRLVYKDNWNIHLTKTGFTNEAGHCLVMRTEMAKRQVAFVVLDAYGKYTH 280
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ L + K + + ++
Sbjct: 281 IADANRLRNW----LETGKVTPIPAEAKQYKKQRSQQQLAK 317
>gi|239815358|ref|YP_002944268.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Variovorax
paradoxus S110]
gi|239801935|gb|ACS19002.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Variovorax
paradoxus S110]
Length = 394
Score = 120 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 94/244 (38%), Gaps = 8/244 (3%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
A K ++D +T V+ ASLTKLMT ++ ITI
Sbjct: 131 ALDLKSSVALVIDQDTHEVLFSKNDHAVLPIASLTKLMTGLLISEA----HLPNDELITI 186
Query: 83 SKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+++ + S S G+T++ L L ++ S N A A+ + FV MN
Sbjct: 187 TQDDVDTEKGSRSRLTVGTTLSRGELLHLALMSSENRAAHALGRTYPGGLATFVSIMNAK 246
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--K 199
+K LG+ T ++ G+ + +++ + + +E+ + +
Sbjct: 247 AKMLGMKDTRYVEPTGLSSRNQSSAQDLALLVNAAYSDATVRSLSTSPEYQVEVGNRVLQ 306
Query: 200 YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ TN V + G KTG+ +G +V A + LI V L + + +R +
Sbjct: 307 FNTTNRLVKSPDWEIGVQKTGYISEAGQCLVMQAKVAGRKLIMVFLDSAGKFSRIADAER 366
Query: 259 LLSM 262
+
Sbjct: 367 VRRW 370
>gi|261400432|ref|ZP_05986557.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
lactamica ATCC 23970]
gi|269209880|gb|EEZ76335.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
lactamica ATCC 23970]
Length = 312
Score = 120 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I+P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 48 IEIFAESTIYPADTQAITGGLILSSQSALVVNNQTGQILYQKNADRIMPIASISKLMSAM 107
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + ITI+ + + + S G+++T L L ++ S N A
Sbjct: 108 VVLDAD----LNMDETITITPDEIDRLKGTGSRLAIGTSLTRRELLHLSLMSSENRATHA 163
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ + F G+ + +TA+D+ ++
Sbjct: 164 LGRTYPGGMGAFVAAMNQKAQSLGMYGSRFYEPTGL-NFHNVSTAKDLNLMVNAAVRYPL 222
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N + + KTG+ +G ++V A +Q
Sbjct: 223 IRANSTSNYASVQTKNGQQNYKNSNALIREGRWRIELQKTGYIREAGRSMVVRANIQNQP 282
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 283 VTIVLLNSPTSATRVNDARKIESW 306
>gi|229032648|ref|ZP_04188611.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
gi|228728647|gb|EEL79660.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
Length = 301
Score = 120 bits (299), Expect = 4e-25, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 37 FTGMIFFSYAQRQQAVRADQPSITGQYAITIDADTGEILYGKREDERSYPASIAKMMTTL 96
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE ITI++NA + + G + D ALKL+++ SA+ IA
Sbjct: 97 LLLENVKE-----DEEITITENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 151
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+A+++
Sbjct: 152 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITKEALKYP 211
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 212 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 271
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 272 RVINVVL-SSTRTQLYPDTKKMAHYAFQQ 299
>gi|259506608|ref|ZP_05749510.1| penicillin-binding protein [Corynebacterium efficiens YS-314]
gi|259165806|gb|EEW50360.1| penicillin-binding protein [Corynebacterium efficiens YS-314]
Length = 438
Score = 120 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 49/245 (20%), Positives = 94/245 (38%), Gaps = 12/245 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
E + + D ++G ++A P + PAS+ K + + T +T
Sbjct: 119 PENQTASAWMVFDLDSGEILAAKDPHGRYRPASIIKALIGLIAIEQ-----LDPTQKVTG 173
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ +A+ S +G T+D L L++ S ND A +A+ L ++ ++ +N +
Sbjct: 174 TWDAANIEGSRVGVGEGGEYTVDELLHGLLLASGNDAAYLLAQEL-GGDEATLEMVNERA 232
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-----GLEIKG 197
+ +G T G+ G T+A DMA++ + + +G
Sbjct: 233 REIGTEDTFVATYSGLDAPGMSTSAYDMALIYQHAWKNPRFAQIVDTEFIDFPGWGDNEG 292
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVS 256
+ N N G KTG+T + V + + + + AVIL R + +
Sbjct: 293 FQVWNDNGLFMNDPDGIGGKTGYTDDANHTFVGALNREGRRIGAVILDTTIDKGRPWEQA 352
Query: 257 ASLLS 261
L+
Sbjct: 353 RELID 357
>gi|25027255|ref|NP_737309.1| putative penicillin-binding protein [Corynebacterium efficiens
YS-314]
gi|23492536|dbj|BAC17509.1| putative penicillin-binding protein [Corynebacterium efficiens
YS-314]
Length = 447
Score = 120 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 49/245 (20%), Positives = 94/245 (38%), Gaps = 12/245 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
E + + D ++G ++A P + PAS+ K + + T +T
Sbjct: 128 PENQTASAWMVFDLDSGEILAAKDPHGRYRPASIIKALIGLIAIEQ-----LDPTQKVTG 182
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ +A+ S +G T+D L L++ S ND A +A+ L ++ ++ +N +
Sbjct: 183 TWDAANIEGSRVGVGEGGEYTVDELLHGLLLASGNDAAYLLAQEL-GGDEATLEMVNERA 241
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-----GLEIKG 197
+ +G T G+ G T+A DMA++ + + +G
Sbjct: 242 REIGTEDTFVATYSGLDAPGMSTSAYDMALIYQHAWKNPRFAQIVDTEFIDFPGWGDNEG 301
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVS 256
+ N N G KTG+T + V + + + + AVIL R + +
Sbjct: 302 FQVWNDNGLFMNDPDGIGGKTGYTDDANHTFVGALNREGRRIGAVILDTTIDKGRPWEQA 361
Query: 257 ASLLS 261
L+
Sbjct: 362 RELID 366
>gi|241764854|ref|ZP_04762858.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
delafieldii 2AN]
gi|241365603|gb|EER60333.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
delafieldii 2AN]
Length = 358
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 10/249 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ K ++D +T V+ ASLTKLMT +V +
Sbjct: 96 QVNDPLDLKSSVAYVIDQDTHEVLLSKNDHAVLPIASLTKLMTGLIVTQA----HLPMDE 151
Query: 79 PITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
PITI+++ + S S G+T+T L L ++ S N A A+ + + FV
Sbjct: 152 PITITQDDVDTEKGSRSRLSVGTTLTRGEMLHLALMSSENRAAHALGRTYPGGLEAFVAL 211
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--- 194
MN+ ++++G++ T ++ G+ ++ARD+A+L D
Sbjct: 212 MNSKARSIGMTDTVYVEPTGLSSRNQ-SSARDLALLVNVAHGDPVMREFSTSPGYEVAVG 270
Query: 195 IKGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K ++ NTN V G KTG+ +G +V + LI V L + + +R
Sbjct: 271 HKTLQFNNTNGLVKNPDWNIGLQKTGYISEAGRCLVMQTHIAGRKLIMVFLDSAGKFSRL 330
Query: 254 KVSASLLSM 262
+ +
Sbjct: 331 GDAQRVRHW 339
>gi|332754764|gb|EGJ85129.1| D-alanyl-D-alanine endopeptidase [Shigella flexneri 4343-70]
Length = 301
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 10/245 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D NT VI N+PD AS++KLMTA VV L I+ +
Sbjct: 26 PEIASGSAMIVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQT 85
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + S ++ + L L ++ S N A ++A K F++ MN +K
Sbjct: 86 PE---MKGVYSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAK 142
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGK 198
+LG++ T F+ G+ + +TARD+ L + +
Sbjct: 143 SLGMNNTRFVEPTGL-SVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTL 201
Query: 199 KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ NTN V KTGFT A+G +V + ++ + V++ A + T ++
Sbjct: 202 PFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADAS 261
Query: 258 SLLSM 262
L +
Sbjct: 262 RLRTW 266
>gi|326316983|ref|YP_004234655.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
avenae subsp. avenae ATCC 19860]
gi|323373819|gb|ADX46088.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidovorax
avenae subsp. avenae ATCC 19860]
Length = 371
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 100/249 (40%), Gaps = 10/249 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ K ++D +T V+ ASLTKLMT ++ +
Sbjct: 103 SVADPLDLKSSVALVIDQDTQEVLLSKNDHAVLPIASLTKLMTGLLISEAK----LPMDE 158
Query: 79 PITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
PITI+++ + +S+ +T+T L L ++ S N A A+ + + FV
Sbjct: 159 PITITQDDVDTEKFSSSRLAVGTTLTRGEMLHLALMSSENRAAHALGRTFPGGLEAFVAR 218
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-- 195
MN ++ +G++ T ++ G+ H ++ARD+A L +D
Sbjct: 219 MNAKARLIGMTETRYVEPTGLSSHNQ-SSARDLATLVNVAHSDPLLRELTTSPGYEVAVG 277
Query: 196 -KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ + NTN V G KTG+ +G +V A + LI V L + + +R
Sbjct: 278 RRTLHFNNTNRLVKNPAWDIGLQKTGYISEAGRCLVMQAHIAGRKLIMVFLDSAGKFSRL 337
Query: 254 KVSASLLSM 262
+ +
Sbjct: 338 GDAERVRHW 346
>gi|229158612|ref|ZP_04286671.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
gi|228624926|gb|EEK81694.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
Length = 273
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 57/269 (21%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 9 FTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 68
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 69 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +F++ MN +K LG F NA G G+ + D+A+++
Sbjct: 124 SIAEHIAGSKNEFLKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITKEALKYP 183
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 184 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 244 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 271
>gi|302544633|ref|ZP_07296975.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
hygroscopicus ATCC 53653]
gi|302462251|gb|EFL25344.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
himastatinicus ATCC 53653]
Length = 426
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 46/281 (16%), Positives = 94/281 (33%), Gaps = 23/281 (8%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ + + + D +G V+A + PAS K++ A V +
Sbjct: 86 APALPKELSGKSWMVADAESGEVLASHNAHWRLPPASTLKMLFADTVLPKFPK---TQKH 142
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ S A S+ K + + L L + + + AV + ++ V+ M
Sbjct: 143 TVRASDLAGMGAGSSLVGVKENLDYTVHDLWLGVFLRSGNDAVHVLSAMNGGVPATVRDM 202
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+K L TH + G + G Y++A D+ + + + +
Sbjct: 203 QAKAKKLNALDTHVVTPDGYDEDGQYSSAYDLTLFARSGLQNADFREYCATSTAQFPGEY 262
Query: 199 K-------------YPNTNW-----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
K NT+ + + G G+K G+T +G A +G + L+
Sbjct: 263 KKNKKGKKVRMSFGIQNTDRLLTGIDIKPYKGLAGVKNGYTSKAGSTFTGVAQRGKRVLL 322
Query: 241 AVILGALDRNTR--NKVSASLLSMGFYNKTDRKKINYIIKD 279
++ K +A L GF + +++
Sbjct: 323 VTVMNPQKSEPYGVYKETAKLFDWGFDAADSVNPVGTLVRP 363
>gi|227508596|ref|ZP_03938645.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227191928|gb|EEI71995.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 442
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 58/365 (15%), Positives = 138/365 (37%), Gaps = 42/365 (11%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
++++ + + + + A++ K ++D +G ++ + D ASL+K
Sbjct: 28 ILVLTCVIAALVPSATAQAKSKKLKYKFEAKEIYVMDAKSGQMLYQKNSDQRRPIASLSK 87
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
LMT Y+ + + + + +SK + S + +K L +
Sbjct: 88 LMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELGTFKIKRSKQYTVKQLYQAALIA 147
Query: 119 IAVAIAESLCK-----TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH------------ 161
+ + A +L + + KF+ MN ++ G+ HF+++ G+
Sbjct: 148 SSNSSAIALGELVAGGSNTKFINLMNRQAQKWGI-DAHFVSSSGLDNTDLTTYKLQVPGT 206
Query: 162 ----GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF------L 211
+ +A+ ++ ++ ++ +FP + + +++ + N+N +
Sbjct: 207 GKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKVGNQVLVNSNRLLKGDAFYKKSE 266
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
DG+KTGFT +G + S + LIA I+ + NT L+ N T
Sbjct: 267 HVDGLKTGFTDTAGLCLTVSFWHKGRHLIATIIDS---NTIFSSMEKLVRAIEKNYTTET 323
Query: 272 -KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
I+ I + +S + + T+ + + + + + +K + +
Sbjct: 324 HLIHQNIFTIGNRKVSASPQDSRATIWKTESSKPSISDSYE----PTTQKLPVKKGSTVG 379
Query: 331 NKITK 335
N + K
Sbjct: 380 NVLVK 384
>gi|228988259|ref|ZP_04148355.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229187255|ref|ZP_04314400.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
gi|228596265|gb|EEK53940.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BGSC 6E1]
gi|228771469|gb|EEM19939.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 273
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 58/269 (21%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 9 FTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 68
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 69 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+A+++
Sbjct: 124 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITKEALKYP 183
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 184 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 244 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 271
>gi|145299285|ref|YP_001142126.1| D-alanyl-D-alanine carboxypeptidase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142852057|gb|ABO90378.1| D-alanyl-D-alanine carboxypeptidase [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 251
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 8/232 (3%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ + TG V++E + AS+TKLMTA VV + LT + +
Sbjct: 1 MVANPRTGEVLSERNANRVMPIASITKLMTALVVLDANQRLSETLTVTMA---DVDRLKG 57
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ S GS ++ + L + ++ S N A A+A ++ F++ MN + LG+ +T
Sbjct: 58 TGSRLAVGSRLSRADMLHIALMSSENRAASALARHYPGGQRAFIEAMNAKASMLGMWSTQ 117
Query: 152 FMNAHGVVQHGHYTTARDMAI-LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
F ++ G+ + ++A D+A ++ + + + + ++ N
Sbjct: 118 FADSTGL-NPRNVSSAHDLAKLVAAASAYPLIRQYSATEQRMVRNGKRQLHYLNSNRLVR 176
Query: 211 LG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
G KTG+ +G +V + + +I V+L A N R + +
Sbjct: 177 EGSWLVTLSKTGYIREAGRCLVMATQINREPVILVLLNADTPNARVADAKRI 228
>gi|289769566|ref|ZP_06528944.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
gi|289699765|gb|EFD67194.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
Length = 475
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 51/282 (18%), Positives = 99/282 (35%), Gaps = 24/282 (8%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + + + D +G V+A + PAS K++ A + +
Sbjct: 119 APVLPKDLTARSWIVADAESGDVLAAHNAHWELAPASTLKMLFADTLLPKWPK---TTKR 175
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S A S+ K + L L + + + AV + ++ +K V M
Sbjct: 176 KVQVSDLAGIGSGSSMVGIKEEETYTVHDLWLGVFLRSGNDAVHVLSAMNDGVEKTVADM 235
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K L T ++ G G ++A D+ + + + ++
Sbjct: 236 NAHAKELQAGDTTVVSPDGYDMPGQVSSAYDLTLFARSGLQKKDFREYASTVRAKFPGET 295
Query: 199 K-------------YPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
K NTN V + G G+K G+T +G A QG + L
Sbjct: 296 KKDKKGKTSREPFEIQNTNRLLAGDTDVEVYPGIAGVKNGYTTNAGNTFTGVAEQGGKVL 355
Query: 240 IAVILG-ALDR-NTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
+ ++ A D+ N K +A L GF + + +++
Sbjct: 356 LVTVMHPAEDKHNEVYKETARLFDWGFRAAGKVRPVGELVRP 397
>gi|256785674|ref|ZP_05524105.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
Length = 424
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 51/282 (18%), Positives = 99/282 (35%), Gaps = 24/282 (8%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + + + D +G V+A + PAS K++ A + +
Sbjct: 68 APVLPKDLTARSWIVADAESGDVLAAHNAHWELAPASTLKMLFADTLLPKWPK---TTKR 124
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S A S+ K + L L + + + AV + ++ +K V M
Sbjct: 125 KVQVSDLAGIGSGSSMVGIKEEETYTVHDLWLGVFLRSGNDAVHVLSAMNDGVEKTVADM 184
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K L T ++ G G ++A D+ + + + ++
Sbjct: 185 NAHAKELQAGDTTVVSPDGYDMPGQVSSAYDLTLFARSGLQKKDFREYASTVRAKFPGET 244
Query: 199 K-------------YPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
K NTN V + G G+K G+T +G A QG + L
Sbjct: 245 KKDKKGKTSREPFEIQNTNRLLAGDTDVEVYPGIAGVKNGYTTNAGNTFTGVAEQGGKVL 304
Query: 240 IAVILG-ALDR-NTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
+ ++ A D+ N K +A L GF + + +++
Sbjct: 305 LVTVMHPAEDKHNEVYKETARLFDWGFRAAGKVRPVGELVRP 346
>gi|21223223|ref|NP_629002.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)]
gi|7649577|emb|CAB89066.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
coelicolor A3(2)]
Length = 424
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 51/282 (18%), Positives = 99/282 (35%), Gaps = 24/282 (8%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + + + D +G V+A + PAS K++ A + +
Sbjct: 68 APVLPKDLTARSWIVADAESGDVLAAHNAHWELAPASTLKMLFADTLLPKWPK---TTKR 124
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S A S+ K + L L + + + AV + ++ +K V M
Sbjct: 125 KVQVSDLAGIGSGSSMVGIKEEETYTVHDLWLGVFLRSGNDAVHVLSAMNDGVEKTVADM 184
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K L T ++ G G ++A D+ + + + ++
Sbjct: 185 NAHAKELQAGDTTVVSPDGYDMPGQVSSAYDLTLFARSGLQKKDFREYASTVRAKFPGET 244
Query: 199 K-------------YPNTNW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
K NTN V + G G+K G+T +G A QG + L
Sbjct: 245 KKDKKGKTSREPFEIQNTNRLLAGDADVEVYPGIAGVKNGYTTNAGNTFTGVAEQGGKVL 304
Query: 240 IAVILG-ALDR-NTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
+ ++ A D+ N K +A L GF + + +++
Sbjct: 305 LVTVMHPAEDKHNEVYKETARLFDWGFRAAGKVRPVGELVRP 346
>gi|269139886|ref|YP_003296587.1| D-alanyl-D-alanine endopeptidase [Edwardsiella tarda EIB202]
gi|267985547|gb|ACY85376.1| D-alanyl-D-alanine endopeptidase [Edwardsiella tarda EIB202]
gi|304559723|gb|ADM42387.1| Murein-DD-endopeptidase [Edwardsiella tarda FL6-60]
Length = 309
Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 12/240 (5%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++D N VI ++PD AS+TKLMTA V L I + + ++
Sbjct: 46 SAMVVDMNNHQVIYASHPDVQVPIASITKLMTAMVTLDAHP----NLDEVIAVDIHRTKE 101
Query: 90 -PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S + GS +T L L ++ S N A +A F++ MN ++ LG++
Sbjct: 102 LKGVFSRVRVGSELTRRQMLLLALMSSENRAAATLAHHYPGGYDAFIRAMNAKARALGMT 161
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-YMHYFQIKGLEIKGKKYP----NT 203
TH++ G+ + ++ARD+ L K + + K + Y NT
Sbjct: 162 RTHYVEPTGL-SPNNVSSARDLVKLLQAAKGYPLIGELSTTETKSVTFAHPTYTETFNNT 220
Query: 204 NWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + KTGFT +G + + G + + V+L A + T + L
Sbjct: 221 NHLLRNDKWNIQMTKTGFTNQAGHCLAMRTVIGGRPVALVVLDAFGKYTHFADANRLREW 280
>gi|313668773|ref|YP_004049057.1| D-alanyl-D-alanine-endopeptidase [Neisseria lactamica ST-640]
gi|309378137|emb|CBX23227.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006235|emb|CBN87697.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria lactamica
020-06]
Length = 312
Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I+P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 48 IEIFAESTIYPTDTQAITGGLILSSQSALVVNNQTGQILYQKNADRIMPIASISKLMSAM 107
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + ITI+ + + + S G+++T L L ++ S N A
Sbjct: 108 VVLDAD----LNMDETITITPDEIDRLKGTGSRLAIGTSLTRRELLHLSLMSSENRATHA 163
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ + F G+ + +TA+D+ ++
Sbjct: 164 LGRTYPGGMGAFVAAMNQKAQSLGMYGSRFYEPTGL-NFHNVSTAKDLNLMVNAAVRYPL 222
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N + + KTG+ +G ++V A +Q
Sbjct: 223 IRANSTSNYASVQTKNGQQNYKNSNALIREGRWRIELQKTGYIREAGRSMVVRANIQNQP 282
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 283 VTIVLLNSPTSATRVNDARKIESW 306
>gi|328914259|gb|AEB55092.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC]
Length = 412
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 59/341 (17%), Positives = 120/341 (35%), Gaps = 40/341 (11%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL-----KEKKAMLTT 78
+ ++ TG V+ D PAS+TK+ TA + +
Sbjct: 8 PETRGNAVAVVHAETGKVLYAKDIDKRIYPASMTKIATALFILKKHPDVLNRFIIVKPDA 67
Query: 79 PITISKNASEYPPSNSTFKK------------GSTMTLDNALKLLIVKSANDIAVAIAES 126
+I+ A + S ++ + L++ SAND A A+A +
Sbjct: 68 IASITPQAKKQSGYRSPPHWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANALAIA 127
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----- 181
+ +F++ +N+ + +G + THF N HG+ HYTTA D+ + +
Sbjct: 128 CSGSVVEFMKQLNDFLREIGCAHTHFNNPHGLHHPNHYTTAGDLTRIMREGLKEPLFRQV 187
Query: 182 --PQYMHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+ + N + + A G KTG T +G N+V +A +
Sbjct: 188 IRTTNYKMAPTNLSQERILNLTNKLILPGSTYYYPPALGGKTGTTKDAGKNLVFAAKKHG 247
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296
+S+I + G + + +L F + R+ + + + + + ++
Sbjct: 248 RSIITIAAGYSVMSELYEDVIALCEGVFNEQPLRRYLIPPTEKYTLR------LGLLGKI 301
Query: 297 CTTQKEIINYNTQMKEAKDKESH-------FIDFEKITLLK 330
+ Y+ E ++ ++ + K LL
Sbjct: 302 SIPLPHGVYYDFYASEGEEPKTLSFVPHATKLPIHKGDLLG 342
>gi|153826719|ref|ZP_01979386.1| penicillin-binding protein 5 [Vibrio cholerae MZO-2]
gi|149739506|gb|EDM53740.1| penicillin-binding protein 5 [Vibrio cholerae MZO-2]
Length = 194
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 61/188 (32%), Positives = 92/188 (48%), Gaps = 10/188 (5%)
Query: 3 QFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+FLV +MA + + + Y L+D +TG V+ E+ NPAS
Sbjct: 5 KFLVRFSMACMAFVPTLGFSALTVVPEPPQLAANGYVLIDFHTGKVLVEHNAHQKLNPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLI 112
LTKLMT+YV +K + IS NA S + G+ + L + + LI
Sbjct: 65 LTKLMTSYVAGQEMKRGNIHADDKVRISNNAWAKKFPDSSKMFIEVGTYVNLMDLYRGLI 124
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
V+S ND +VAIAE + +E FV MN+ ++ LG++ + F N HG+ Y+T D+A+
Sbjct: 125 VQSGNDASVAIAEHVAGSEGAFVSLMNSWAQQLGMNNSSFANPHGLDNPALYSTPYDIAL 184
Query: 173 LSWRIKTD 180
L I D
Sbjct: 185 LGRAIIRD 192
>gi|318076420|ref|ZP_07983752.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF]
Length = 374
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 52/328 (15%), Positives = 100/328 (30%), Gaps = 50/328 (15%)
Query: 10 MAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TA 62
+A+ + A + + D +G ++A P PAS K++ T
Sbjct: 47 LALPGTQVAPGAGAPKLPKKLTARSWVVADAESGEILAARNPHWKLAPASTLKMLFADTL 106
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
FS K + L I + +S + L L+ AV
Sbjct: 107 LPKFSKDKVHQVTLKDLDGIGEGSSLVGIKEDLPYSVHDLWLGVFLRSGND------AVH 160
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ S+ + V+ M + L + TH + G G ++A D+ + + + P
Sbjct: 161 VLSSMNNGVAQTVRDMQARAHELQANDTHVVTPDGYDAKGQVSSAYDLTLFARDGLKN-P 219
Query: 183 QYMHYFQIKGLEI----------------------------KGKKYPNTNW------AVG 208
+ Y + + NTN +
Sbjct: 220 DFREYCSTAEAQFPGEFAKKKKDKDKKKATDGQAGPEQRPREHFGIQNTNRLLTGTYDLK 279
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG--ALDRNTRNKVSASLLSMGFYN 266
+ G G+K G T +G A A +GD+ L+ ++ + + +A LL GF
Sbjct: 280 PYQGIAGVKNGNTTNAGATYTAYAQRGDRKLLVTVMHPDYDESQAVYREAARLLDWGFAA 339
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISE 294
+ ++ + +
Sbjct: 340 DGKVTPVGELVPPRSVVAERAKASKEAA 367
>gi|318061826|ref|ZP_07980547.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG]
Length = 499
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 52/328 (15%), Positives = 100/328 (30%), Gaps = 50/328 (15%)
Query: 10 MAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TA 62
+A+ + A + + D +G ++A P PAS K++ T
Sbjct: 47 LALPGTQVAPGAGAPKLPKKLTARSWVVADAESGEILAARNPHWKLAPASTLKMLFADTL 106
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
FS K + L I + +S + L L+ AV
Sbjct: 107 LPKFSKDKVHQVTLKDLDGIGEGSSLVGIKEDLPYSVHDLWLGVFLRSGND------AVH 160
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ S+ + V+ M + L + TH + G G ++A D+ + + + P
Sbjct: 161 VLSSMNNGVAQTVRDMQARAHELQANDTHVVTPDGYDAKGQVSSAYDLTLFARDGLKN-P 219
Query: 183 QYMHYFQIKGLEI----------------------------KGKKYPNTNW------AVG 208
+ Y + + NTN +
Sbjct: 220 DFREYCSTAEAQFPGEFAKKKKDKDKKKATDGQAGPEQRPREHFGIQNTNRLLTGTYDLK 279
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG--ALDRNTRNKVSASLLSMGFYN 266
+ G G+K G T +G A A +GD+ L+ ++ + + +A LL GF
Sbjct: 280 PYQGIAGVKNGNTTNAGATYTAYAQRGDRKLLVTVMHPDYDESQAVYREAARLLDWGFAA 339
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISE 294
+ ++ + +
Sbjct: 340 DGKVTPVGELVPPRSVVAERAKASKEAA 367
>gi|257440859|ref|ZP_05616614.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium
prausnitzii A2-165]
gi|257196699|gb|EEU94983.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium
prausnitzii A2-165]
Length = 313
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 58/237 (24%), Positives = 98/237 (41%), Gaps = 11/237 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
P+ LL ++G V+AE D PAS+TK+MTA + + +T P I
Sbjct: 57 LNSPHAILLRADSGEVLAEKDADSTIYPASMTKMMTALLAIEANPDLDTPVTLPEEIFPA 116
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + F+ G T T+ + L ++ S + A+A + +E+ F MN + L
Sbjct: 117 LQAQNASLAGFQAGETATVRDLLYGAMLPSGAECCEALAREVSGSEEAFAARMNQKAAEL 176
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY----MHYFQIKGLEIKGKKYP 201
G++ THF N G+ H +T RDMA L+ + + + + +
Sbjct: 177 GMTGTHFCNPTGLHDPEHVSTVRDMARLTEAALQNETFRKLFTTERYTVPATNCHPQGFT 236
Query: 202 NTNWAVGTFLG-------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + G G KTG+T +G + + A + I V GA ++
Sbjct: 237 MHSTLLSQLDGTELHRGRILGGKTGYTGEAGLCLASLAEVKGREYILVTAGAGGDHS 293
>gi|302519514|ref|ZP_07271856.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
gi|302428409|gb|EFL00225.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
Length = 489
Score = 119 bits (297), Expect = 6e-25, Method: Composition-based stats.
Identities = 52/328 (15%), Positives = 100/328 (30%), Gaps = 50/328 (15%)
Query: 10 MAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TA 62
+A+ + A + + D +G ++A P PAS K++ T
Sbjct: 47 LALPGTQVAPGAGAPKLPKKLTARSWVVADAESGEILAARNPHWKLAPASTLKMLFADTL 106
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
FS K + L I + +S + L L+ AV
Sbjct: 107 LPKFSKDKVHQVTLKDLDGIGEGSSLVGIKEDLPYSVHDLWLGVFLRSGND------AVH 160
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ S+ + V+ M + L + TH + G G ++A D+ + + + P
Sbjct: 161 VLSSMNNGVAQTVRDMQARAHELQANDTHVVTPDGYDAKGQVSSAYDLTLFARDGLKN-P 219
Query: 183 QYMHYFQIKGLEI----------------------------KGKKYPNTNW------AVG 208
+ Y + + NTN +
Sbjct: 220 DFREYCSTAEAQFPGEFAKKKKDKNKKKATDGQAGPEQRPREHFGIQNTNRLLTGTYDLK 279
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG--ALDRNTRNKVSASLLSMGFYN 266
+ G G+K G T +G A A +GD+ L+ ++ + + +A LL GF
Sbjct: 280 PYQGIAGVKNGNTTNAGATYTAYAQRGDRKLLVTVMHPDYDESQAVYREAARLLDWGFAA 339
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISE 294
+ ++ + +
Sbjct: 340 DGKVTPVGELVPPRSVVAERAKASKEAA 367
>gi|89901123|ref|YP_523594.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodoferax ferrireducens
T118]
gi|89345860|gb|ABD70063.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Rhodoferax ferrireducens T118]
Length = 346
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 62/248 (25%), Positives = 95/248 (38%), Gaps = 10/248 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S K ++D T V+ ASLTKLMT V+
Sbjct: 78 ASDTLDLKSSVALVIDQETNEVLFSKNEQAVLPIASLTKLMTGLVLQEA----HLPTDQM 133
Query: 80 ITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
ITIS++ + S S K G+T+ L L ++ S N A A+A S FV M
Sbjct: 134 ITISQDDVDTEKGSTSRLKVGTTLNRGELLHLALMSSENRAAHALARSYPGGLPVFVGLM 193
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE---I 195
N ++ +G++ TH++ G+ ++ARD+A L D
Sbjct: 194 NAKAQLIGMTDTHYVEPTGLSSKNQ-SSARDLAKLVNVAHGDPILRELTTSPDYQVAVGN 252
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ +Y NTN V G KTG+ +G +V + LI V L + + TR
Sbjct: 253 RTLQYNNTNRLVKNPSWDIGLQKTGYISEAGRCLVMQTKIAGRKLIMVFLDSAGKLTRIA 312
Query: 255 VSASLLSM 262
+ +
Sbjct: 313 DAERVRRW 320
>gi|93005508|ref|YP_579945.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Psychrobacter
cryohalolentis K5]
gi|92393186|gb|ABE74461.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Psychrobacter cryohalolentis K5]
Length = 364
Score = 119 bits (297), Expect = 7e-25, Method: Composition-based stats.
Identities = 51/252 (20%), Positives = 95/252 (37%), Gaps = 19/252 (7%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF--LKEKKAMLTTP 79
I + ++D TG I + D AS+TK+MTA VV ++ L
Sbjct: 112 IPISTDSRSVAVIDAETGESIYQKDADIARPMASITKVMTAIVVLDAGLDMREELTLDPE 171
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ ++S K G + L + ++KS N A ++A + F++ MN
Sbjct: 172 DFVGPKR-----ASSNLKSGDRLNRAEMLLMALMKSENPAAKSLARNYPGGYSAFIRAMN 226
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ LG+S F + G+ + ++ D+ + ++ + K +
Sbjct: 227 RKAQELGMSTAFFGDPTGL-DKRNVASSNDLVKMVR-AAGNYDVIRRFSTTKSYDFFVSN 284
Query: 200 YPNTNWAVGTFLG----------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ + N KTGF +G +V ++ I VILGA
Sbjct: 285 FSSGNRTYKANNTSSLVRDGSYPIGISKTGFINEAGRCVVMETRVNNRPAIIVILGANSS 344
Query: 250 NTRNKVSASLLS 261
TR + ++L+
Sbjct: 345 ATRWGDAKNILN 356
>gi|229199155|ref|ZP_04325838.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
gi|228584426|gb|EEK42561.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1293]
Length = 273
Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 9 FTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 68
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 69 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 124 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 183
Query: 182 PQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + + K N A G K+G + + +V + +
Sbjct: 184 VVLEYMNSTRTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 244 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 271
>gi|218508407|ref|ZP_03506285.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Brasil
5]
Length = 312
Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats.
Identities = 97/246 (39%), Positives = 148/246 (60%), Gaps = 2/246 (0%)
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ L TPI +SK A+ P + FK G +TLD+ALK+L+VKSANDIAVA+AE++ T+
Sbjct: 2 GQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALKILMVKSANDIAVAVAEAVGGTQ 61
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++
Sbjct: 62 EGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYAGYFSLE 121
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
G + PN N +G F GADGMKTGF CASGFN + SA + ++L++V+LG
Sbjct: 122 GFTTGQQNVPNLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAA 181
Query: 252 RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
R +A+LL G + +K + Q +V +I+ ++C+ + I T+ +
Sbjct: 182 RADATANLLQKGLTTQFPGNDTLGSLKPYGQGQD--QVTDITADICSAKGAKIRSETRDE 239
Query: 312 EAKDKE 317
+ K
Sbjct: 240 VGRMKV 245
>gi|70731349|ref|YP_261090.1| D-alanyl-D-alanine endopeptidase [Pseudomonas fluorescens Pf-5]
gi|68345648|gb|AAY93254.1| D-alanyl-D-alanine-endopeptidase [Pseudomonas fluorescens Pf-5]
Length = 312
Score = 119 bits (297), Expect = 8e-25, Method: Composition-based stats.
Identities = 63/282 (22%), Positives = 107/282 (37%), Gaps = 24/282 (8%)
Query: 1 MRQFLVIIAMAML--------------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENY 46
M+ L I+++ + P + LLD T VI +
Sbjct: 1 MKIRLSILSLLFAVSGTLIAHSVDASETTAAPRDTSQLHIASGSALLLDLQTNKVIYSSN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLD 105
PD AS+TKLMTA VV L I+++ + E S K S ++
Sbjct: 61 PDVIVPIASVTKLMTAMVVLDAK----LPLDEYISMNISDTPEMKGVFSRVKLNSELSRR 116
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ L + ++ S N A ++A F+ MN +K+LG++ T ++ G+ H T
Sbjct: 117 DTLLIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKSLGMTHTRYVEPTGLSIHNVST 176
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGF 220
+L K + + K + + Y NT+ V KTGF
Sbjct: 177 ARDLSKLLVASRKYPLLSELSTTKEKTVAFRKPNYTLGFRNTDHLVNKEKWDIKITKTGF 236
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
T +G +V G++ + VIL A + T ++ + +
Sbjct: 237 TNQAGHCLVLVTSMGNRPVALVILDAFGKYTHFADASRIRNW 278
>gi|153813456|ref|ZP_01966124.1| hypothetical protein RUMOBE_03876 [Ruminococcus obeum ATCC 29174]
gi|149830477|gb|EDM85569.1| hypothetical protein RUMOBE_03876 [Ruminococcus obeum ATCC 29174]
Length = 334
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 54/248 (21%), Positives = 100/248 (40%), Gaps = 12/248 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
PY L++ +G VI + + PAS+TK+MT + LK+ +T + +
Sbjct: 75 INSPYAVLMNAKSGKVIGDINGEEQMYPASMTKIMTTILAIENLKDLNQEITITNDMVAD 134
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
+ F+ T+ + L +++ S + VA+A+++ + FV MN ++ L
Sbjct: 135 LYVQDAMQAGFQPNETVKAIDLLYGVMLPSGAECCVALADTVAGSVSDFVTLMNEKAEKL 194
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG-----------LE 194
G++ THF + G+ + HY+TA+D+A+L + +
Sbjct: 195 GMTGTHFSSISGLHREDHYSTAKDIALLLRYAIKNDTFREIIESPYHSTSGTNIHPDGIT 254
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL-DRNTRN 253
+ N + G KTG+T +G + + A I V GA N
Sbjct: 255 FYSTMFKNLSDTSVIDGEIKGGKTGYTSQAGHCLASFAEIDGVEYILVTAGAPGTGNPHI 314
Query: 254 KVSASLLS 261
+ L +
Sbjct: 315 DDAVKLYN 322
>gi|3043860|gb|AAC14599.1| extracellular protein Exp2 precursor [Lactococcus lactis subsp.
cremoris MG1363]
Length = 284
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 67/281 (23%), Positives = 113/281 (40%), Gaps = 37/281 (13%)
Query: 1 MRQFLVIIAMA---------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYP-DHP 50
M++ +I + + T +D ++G ++ D
Sbjct: 1 MKKIAIIFCTLLMSLSVLSSFAVSADTTTTNNFTVAAKSAIAIDASSGKILYAQNADDAS 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDN 106
AS+TKL+TAY+V+ + E K TT + IS A SN + T+ +
Sbjct: 61 TRIASITKLLTAYLVYKNVAENKLTWTTKVPISDYAYELTQNSNASNIPLAQNGQYTVKD 120
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG---- 162
L L++ SAN A+A+AE + +E KFV M K+ G++ +H +NA G+
Sbjct: 121 LLNALLLPSANSAAIALAEKIAGSEPKFVDMMTKQMKDWGITDSHLVNASGLPNDDLNGH 180
Query: 163 ----------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAV 207
+ +A+ +A LS+ + DFP+ + + + NTN +
Sbjct: 181 IYPGSGASATNTMSAKAVATLSYHLIQDFPEVLQITKKTEIPFDTGNEEKMTLTNTNQML 240
Query: 208 GTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F G DG+KTG T + Q +I V+L
Sbjct: 241 SGFSTSRTGVDGLKTGSTSFQIDCFAGTTNQNGFRIITVVL 281
>gi|315445088|ref|YP_004077967.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
gi|315263391|gb|ADU00133.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium sp. Spyr1]
Length = 297
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 53/256 (20%), Positives = 94/256 (36%), Gaps = 14/256 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ L D +TG V+A + + PAS K++ A VV L
Sbjct: 38 AGSVPVPDGPAQAWVLADMDTGAVLAARQENGRFAPASTIKILLAMVVLDE-----LPLD 92
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ ++ + + + G+T T L+ L++ S ND A +A ++ V
Sbjct: 93 ATVVANEADTRVECNCAGVAPGTTYTTRQLLEGLLLVSGNDAANTLA-TMLGGRDAAVAK 151
Query: 138 MNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK---G 192
MN + LG T + G+ ++T RD+A+L Q
Sbjct: 152 MNAKAAGLGAHGTRAGSPSGIDGPGIDIWSTPRDLAVLFRAAMAYPVFAQITAQPTAVFP 211
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDR 249
+ N + + + G G KTG+T + VA A + + L+ ++
Sbjct: 212 TKSGDVVLVNQDEMLHRYPGTFGGKTGYTDLARKTFVAGASRNGRHLVVAMMYGLVTEGG 271
Query: 250 NTRNKVSASLLSMGFY 265
T +++LL GF
Sbjct: 272 PTYWDQASALLDWGFA 287
>gi|319762474|ref|YP_004126411.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Alicycliphilus
denitrificans BC]
gi|330825675|ref|YP_004388978.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicycliphilus
denitrificans K601]
gi|317117035|gb|ADU99523.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicycliphilus
denitrificans BC]
gi|329311047|gb|AEB85462.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Alicycliphilus
denitrificans K601]
Length = 364
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 59/248 (23%), Positives = 101/248 (40%), Gaps = 10/248 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+S K ++D +T V+ ASLTKLMT ++ + + P
Sbjct: 101 VSDPLDLKSSVALVIDQDTKEVLLSKNDHAVLPIASLTKLMTGLLISEA----RLPMDEP 156
Query: 80 ITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
ITI+++ + S S G+T++ L L ++ S N A A+ + FVQ M
Sbjct: 157 ITITQDDVDTEKGSGSRLTVGTTLSRGELLHLALMSSENRAAHALGRTYPGGLAVFVQRM 216
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE---I 195
N ++ LG++ T ++ G+ ++A D+A L D
Sbjct: 217 NAKARLLGMTETRYVEPTGLSSKNQ-SSAHDLATLVNVAHGDPLLRELSTSPSHEVAVGQ 275
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ +Y NTN V + G KTG+ +G +V A + LI V L + + +R
Sbjct: 276 RVLQYNNTNRLVKSPSWDIGLQKTGYISEAGRCLVMQAQVAGRKLIMVFLDSAGKFSRLG 335
Query: 255 VSASLLSM 262
+ + S
Sbjct: 336 DAERVRSW 343
>gi|145224758|ref|YP_001135436.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum
PYR-GCK]
gi|145217244|gb|ABP46648.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium gilvum
PYR-GCK]
Length = 313
Score = 118 bits (296), Expect = 8e-25, Method: Composition-based stats.
Identities = 53/256 (20%), Positives = 94/256 (36%), Gaps = 14/256 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ L D +TG V+A + + PAS K++ A VV L
Sbjct: 54 AGSVPVPDGPAQAWVLADMDTGAVLAARQENGRFAPASTIKILLAMVVLDE-----LPLD 108
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ ++ + + + G+T T L+ L++ S ND A +A ++ V
Sbjct: 109 ATVVANEADTRVECNCAGVAPGTTYTTRQLLEGLLLVSGNDAANTLA-TMLGGRDAAVAK 167
Query: 138 MNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK---G 192
MN + LG T + G+ ++T RD+A+L Q
Sbjct: 168 MNAKAAGLGAHGTRAGSPSGIDGPGIDIWSTPRDLAVLFRAAMAYPVFAQITAQPTAVFP 227
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDR 249
+ N + + + G G KTG+T + VA A + + L+ ++
Sbjct: 228 TKSGDVVLVNQDEMLHRYPGTFGGKTGYTDLARKTFVAGASRNGRHLVVAMMYGLVTEGG 287
Query: 250 NTRNKVSASLLSMGFY 265
T +++LL GF
Sbjct: 288 PTYWDQASALLDWGFA 303
>gi|167772343|ref|ZP_02444396.1| hypothetical protein ANACOL_03720 [Anaerotruncus colihominis DSM
17241]
gi|167665446|gb|EDS09576.1| hypothetical protein ANACOL_03720 [Anaerotruncus colihominis DSM
17241]
Length = 516
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 71/366 (19%), Positives = 124/366 (33%), Gaps = 50/366 (13%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF-LKEK 72
S + + +L+ ++G + E +PASLTK+MTA V K
Sbjct: 65 SASLYTPPDEDLLQSRGIFMLNIDSGERVYERNSQDKIHPASLTKIMTAIVALESGHDLK 124
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTE 131
+ I +G L + L ++++S N+ ++ IA+ + +
Sbjct: 125 AETTDLKVYIQNYIYNQQAGGGGIYQGDQYVLYDLLNAMLIQSVNEASMMIADYIGNGSI 184
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKTD--------- 180
+ FV MN +K +G THF N G+ YTTA DMA+++ +
Sbjct: 185 EDFVAMMNQKAKEIGAMNTHFGNPSGLYVESEESYTTAYDMALIAQYAMQNNDFAEIVSR 244
Query: 181 -----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG-FNIVASAIQ 234
P + I PN W + G G+KTG N V++A +
Sbjct: 245 TAYTSQPTTRYPEGITWTTTNKMMIPNQ-WEGYYYEGIKGIKTGSLPDQDVINFVSTATR 303
Query: 235 GDQSLIAVILGAL----------DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
+ + V LGA N K + L + F + + + K
Sbjct: 304 DGYTYLLVCLGAPYRSPDTQEIYQYNLAFKDTERLYNWAFDTFSVKTLMKRGTKVAGVNV 363
Query: 285 LSN-----------------EVPNISEEVCTTQKEIINYNTQM---KEAKDKESHFIDFE 324
+ N +E+ + EI N + ++ K ++ E
Sbjct: 364 RMSWDEDYVDLLADESFARLVPKNATEDDIEPRVEIYNAVEKPIRGQKGKTEQFIDAPIE 423
Query: 325 KITLLK 330
K +
Sbjct: 424 KGQEVG 429
>gi|116874163|ref|YP_850944.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116743041|emb|CAK22165.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 273
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 64/245 (26%), Positives = 111/245 (45%), Gaps = 6/245 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ N I+E D AS+TKLMT ++V +K+ + + + +
Sbjct: 28 NVSADAAAVYSMNDKKAISEKNSDKVMPIASITKLMTTFLVLEAVKKGELSWDEKLDLIR 87
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
S K T ++ + ++V SAND A + F + MN +K
Sbjct: 88 LDDPSAVSLYAITKKRTWSVRDLYSAMLVMSANDAAETLG--NRLDGADFPKKMNKEAKK 145
Query: 145 LGLSA-THFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQYMHYFQI-KGLEIKGKKY 200
LGLS T F++A G+ +T +D+ LS + + +P+ + + KG K
Sbjct: 146 LGLSNKTEFVSASGLDVDGERSVSTTKDLYKLSSELISTYPEVLDTTSKSSIITEKGAKI 205
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
+TN +GT G DG+KTGFT +G+ + +A Q + +I+++L + R K + L+
Sbjct: 206 ESTNDLIGTIPGLDGLKTGFTDEAGYCFIGTAKQNGKRVISIVLNSDTAENRFKDTEKLI 265
Query: 261 SMGFY 265
+GF
Sbjct: 266 KLGFK 270
>gi|312796721|ref|YP_004029643.1| D-alanyl-D-alanine-endopeptidase [Burkholderia rhizoxinica HKI 454]
gi|312168496|emb|CBW75499.1| D-alanyl-D-alanine-endopeptidase (EC 3.4.99.-) [Burkholderia
rhizoxinica HKI 454]
Length = 401
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 8/235 (3%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D +TG V+ + AS+TKLMTA VV LT ++
Sbjct: 152 FMVDQHTGEVLYDKNSASVVPIASITKLMTAMVVLDSKAPLNERLTVTD---EDRDYEKG 208
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ S GST++ ++ L + ++ S N A A++ F+ MN + LG++ TH
Sbjct: 209 TGSRLSIGSTLSREDMLHIALMASENRAAAALSRYYPGGRPGFIVAMNRKAAELGMAQTH 268
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK---YPNTNWAVG 208
F NA G+ + ++ARD+ + GK+ Y +TN V
Sbjct: 269 FQNATGLTS-QNVSSARDLVKMVNAAYQYPLIRQFSTDRSYDVFTGKRTLAYNSTNALVR 327
Query: 209 TFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
G KTGF +G +V A + +I V+L + + +R + L +
Sbjct: 328 NASWDIGLQKTGFINEAGECLVMQATIHGRPVIMVLLDSFGKYSRFADAQRLRNW 382
>gi|196047530|ref|ZP_03114740.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
03BB108]
gi|196021644|gb|EDX60341.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
03BB108]
Length = 279
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 58/269 (21%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+A+++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|30265054|ref|NP_847431.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Ames]
gi|47530558|ref|YP_021907.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|47567050|ref|ZP_00237767.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
G9241]
gi|49187867|ref|YP_031120.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Sterne]
gi|52140522|ref|YP_086306.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
carboxypeptidase) [Bacillus cereus E33L]
gi|65317000|ref|ZP_00389959.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A2012]
gi|118480099|ref|YP_897250.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
Hakam]
gi|165870851|ref|ZP_02215503.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0488]
gi|167634882|ref|ZP_02393200.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0442]
gi|167639927|ref|ZP_02398195.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0193]
gi|170685975|ref|ZP_02877198.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0465]
gi|170706954|ref|ZP_02897411.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0389]
gi|177652350|ref|ZP_02934853.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0174]
gi|190567200|ref|ZP_03020115.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis Tsiankovskii-I]
gi|196032895|ref|ZP_03100308.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
W]
gi|196040599|ref|ZP_03107899.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
NVH0597-99]
gi|218906208|ref|YP_002454042.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH820]
gi|227817784|ref|YP_002817793.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. CDC 684]
gi|228917642|ref|ZP_04081184.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228930039|ref|ZP_04093049.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228948739|ref|ZP_04111017.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229124549|ref|ZP_04253734.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
gi|229601870|ref|YP_002869251.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0248]
gi|254687345|ref|ZP_05151202.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. CNEVA-9066]
gi|254725358|ref|ZP_05187141.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A1055]
gi|254735318|ref|ZP_05193026.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Western North America USA6153]
gi|254740584|ref|ZP_05198275.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Kruger B]
gi|254753154|ref|ZP_05205190.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Vollum]
gi|254761497|ref|ZP_05213518.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Australia 94]
gi|30259731|gb|AAP28917.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
Ames]
gi|47505706|gb|AAT34382.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|47556368|gb|EAL14702.1| D-alanyl-D-alanine carboxypeptidase, putative [Bacillus cereus
G9241]
gi|49181794|gb|AAT57170.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Sterne]
gi|51973991|gb|AAU15541.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
carboxypeptidase) [Bacillus cereus E33L]
gi|118419324|gb|ABK87743.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis str. Al
Hakam]
gi|164713360|gb|EDR18885.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0488]
gi|167512008|gb|EDR87386.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0193]
gi|167529632|gb|EDR92381.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0442]
gi|170128057|gb|EDS96927.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0389]
gi|170670439|gb|EDT21179.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0465]
gi|172082356|gb|EDT67422.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0174]
gi|190561704|gb|EDV15674.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis Tsiankovskii-I]
gi|195994324|gb|EDX58279.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
W]
gi|196028731|gb|EDX67338.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus
NVH0597-99]
gi|218535970|gb|ACK88368.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH820]
gi|227003439|gb|ACP13182.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
CDC 684]
gi|228658889|gb|EEL14544.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 95/8201]
gi|228811046|gb|EEM57389.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228829538|gb|EEM75165.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228842019|gb|EEM87124.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229266278|gb|ACQ47915.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0248]
Length = 279
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 58/269 (21%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+A+++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|301056499|ref|YP_003794710.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis CI]
gi|300378668|gb|ADK07572.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus biovar
anthracis str. CI]
Length = 279
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 58/269 (21%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+A+++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RIINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|70727253|ref|YP_254169.1| penicillin binding protein 4 [Staphylococcus haemolyticus JCSC1435]
gi|68447979|dbj|BAE05563.1| penicillin binding protein 4 [Staphylococcus haemolyticus JCSC1435]
Length = 430
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 75/363 (20%), Positives = 142/363 (39%), Gaps = 53/363 (14%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIA------ETNKLPYYT---LLDT----------NTGH 40
M++ ++ A+ + I S A T Y + D TG
Sbjct: 1 MKRSLIITFALLLTIVIIAPNSYASEYEPTPTEIARQYGYPNVTDAYQPEGSINVSQTGQ 60
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTF 96
++ + + W PAS+TKLMT Y+ + + + L + I+ SN+
Sbjct: 61 ILYDYQSNQKWYPASMTKLMTMYLTLEAVNKGELSLNDKVHITDKHYRMSTLPELSNTKL 120
Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
G T T+ L++ + S+N A+ +A+ + F MN +K LG+S THF+N
Sbjct: 121 YAGETYTISELLQITVSNSSNAAALILADEVSGNVNDFTDLMNKKAKALGMSNTHFVNPT 180
Query: 157 GVVQ--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
G +TA+D AIL + + P+ +H+ + G Y
Sbjct: 181 GAENKQLKEFAPSKYKNQDNTTSTAKDFAILDHHVIKETPKILHFTKQLAPTQHGVTYYT 240
Query: 203 TNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNTR 252
N + + LG DG+KTG + + +N + + + + VI+GA D R
Sbjct: 241 FNHSLEGAKMSLLGTDGLKTGSSDVADYNHTITTKRNNFRINQVIMGAGDYVNLGGEKQR 300
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
N + ++++ F + +K ++ ++ + + + + + +N
Sbjct: 301 NMMGNAMMNRSFDQYSYKKVLSKGTH-----KINGKKYYVKDNLYDVVPKGMNKKDYKFI 355
Query: 313 AKD 315
KD
Sbjct: 356 VKD 358
>gi|313683330|ref|YP_004061068.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Sulfuricurvum
kujiense DSM 16994]
gi|313156190|gb|ADR34868.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sulfuricurvum
kujiense DSM 16994]
Length = 275
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 57/272 (20%), Positives = 113/272 (41%), Gaps = 15/272 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---KLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M + L+ + + +E + + + ++ PASLT
Sbjct: 1 MLKSLIFFFLLLCITSLHAEIDSEKLDKLNVEALLVKNLKNNEILYSKEALREVKPASLT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MTA + + LT + ISK + P+ + +K+G L + + ++KS N
Sbjct: 61 KIMTATLAIEQGE-----LTRLVVISKEMLQVEPTKAGYKEGEIFLLGDLINAAMIKSDN 115
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
D A+A+A ++ + + F + MN + ++G+ T F N G H++T +D+ L+
Sbjct: 116 DAAMAVAIAIGGSIENFNKMMNAKAASIGMVNTVFTNPCGFDIGNHHSTPQDLLTLAEYA 175
Query: 178 K-----TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
D + + + N + + A G+KTG+T +G ++A A
Sbjct: 176 IKNPVFNDITRLNQHTYYSLNTARKFVANTHNQLLNKYEYAVGVKTGYTSKAGPCLIARA 235
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
+ D+ + V+L + R K + + F
Sbjct: 236 KKEDRDCLIVMLN--SKENRWKTAKEIFEQVF 265
>gi|260907390|ref|ZP_05915712.1| Serine-type D-Ala-D-Ala carboxypeptidase [Brevibacterium linens
BL2]
Length = 408
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 63/284 (22%), Positives = 107/284 (37%), Gaps = 21/284 (7%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + + D ++G + + PAS KL+TA + +KK +T
Sbjct: 63 AKPPKPTGTSWLVGDLDSGELHVAKNVEKRHAPASTIKLLTALALVDEFDDKKKKVTAEF 122
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
E + + + ++D +++ SAND A A+ + +K MN
Sbjct: 123 ----EDMEVDGTKVGLMQTNKYSIDLLFHAMLMSSANDAANALGRAAGGQDKAV-DLMNE 177
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL------- 193
+ LG+S T N G+ G YTTA D+ L+W + D
Sbjct: 178 KAAELGMSNTQAKNTSGLDAKGQYTTAEDLMKLAWAVCEDDYLMKVIGTETYQFPGGTNP 237
Query: 194 ----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ KG + N G G G+K GFT A+ + VA A + ++A +LG +
Sbjct: 238 ETKEKFKGYEIQNHTKIAGQVDGGLGLKNGFTRAAKGSYVAVAERDGHRVVATMLGIDN- 296
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
N+R + + LL F + Q + VP +
Sbjct: 297 NSR-QAAVDLLEWDFAQTDPKSL---QTVPVGVQATAEAVPTAT 336
>gi|254821197|ref|ZP_05226198.1| DacB [Mycobacterium intracellulare ATCC 13950]
Length = 295
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/251 (21%), Positives = 95/251 (37%), Gaps = 14/251 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + D ++G V+A + PAS K + A VV L + +
Sbjct: 42 PDGPAQTWIIADLDSGQVLAGRDQNVAHPPASTIKTLLAQVVLD-----SVSLDSTVVAD 96
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ + K G T T L L++ S ND A +A + V MN +
Sbjct: 97 VADTQVECNCVGIKPGRTYTARQLLDGLLLVSGNDAANTLA-HMLGGPDVTVAKMNAKAA 155
Query: 144 NLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDF---PQYMHYFQIKGLEIKGK 198
+LG + TH G+ G +TA D+A++ + + + +
Sbjct: 156 SLGATNTHAATPSGLDGPGGSGSSTAHDLAVIFRAAMANPVFAQITAEPSAMFPGDNGDR 215
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKV 255
N + + + GA G KTGFT A+ V +A +G + L+ ++ +
Sbjct: 216 LITNQDELLQRYPGAIGGKTGFTNAARKTFVGAAARGGRRLVIAMMYGLVKEGGPSYWDQ 275
Query: 256 SASLLSMGFYN 266
+A+L GF
Sbjct: 276 AATLFDWGFAQ 286
>gi|326789965|ref|YP_004307786.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
DSM 5427]
gi|326540729|gb|ADZ82588.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium lentocellum
DSM 5427]
Length = 450
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/277 (19%), Positives = 101/277 (36%), Gaps = 13/277 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+++L + ++ + F S L++ T +I + PAS TK++T
Sbjct: 3 KKYLSFLLCFIIFSNSLFASALPDISADGAILIEPKTNTIIYSKNMYQTFYPASTTKILT 62
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A V L + T + + S K G T+ + L +++ S N +
Sbjct: 63 ALAVLQDLPTDMII--TKTQTAADEVPADSSQIGLKVGDQYTVLDGLYAVLMASDNYVCY 120
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+A + F + MN + + +HF+N HG HYTT D++ ++ D
Sbjct: 121 DLALADKGNISTFAKRMNGLAIDSNALFSHFINPHGYHDPDHYTTPYDLSQIAKAAFDDP 180
Query: 182 PQYM------HYFQIKGLEIKGKKYPN----TNWAVGTFLGADGMKTGFTCASGFNIVAS 231
+ F++ ++ + KTG+ +G +VA
Sbjct: 181 ILTKIAGTSSYNFKVANSDVVIPLTHTSALLDKNSPYYNSHVVASKTGYHTPAGRTLVAK 240
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
A+ + LI V++ N + L G N T
Sbjct: 241 AVYDNIELIGVVMRTDAPNQ-FEDMNKLFEYGASNFT 276
>gi|291452581|ref|ZP_06591971.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
gi|291355530|gb|EFE82432.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
Length = 292
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/276 (23%), Positives = 110/276 (39%), Gaps = 19/276 (6%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D ++G + D AS TK M VV T +
Sbjct: 20 KVSAKGAFLMDASSGKTVFSKSADTKRQMASTTKTMAVAVVLDTKGVNLDKKVTVKQTYR 79
Query: 85 NASEYPPSNS-TFKKGSTMTLDNALKLLIVKSANDIAVAIAESL------CKTEKKFVQH 137
+ +++ + G +T+ L ++ S D A A+A++ K F+
Sbjct: 80 DYVAKNGASTADLRTGDKLTVRQLLYGTMLPSGCDAAYALADTFGSGSTVSARTKSFISK 139
Query: 138 MNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYM--------HYF 188
MN +K+LG++ T F + G+ +Y+T RD+A L+ +
Sbjct: 140 MNAKAKSLGMTNTKFDSFDGISKAGNNYSTPRDLAKLARHAMKNSTFKTVVKAASTKQKA 199
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
KG + + NTN +G++ GA G KTG A+G ++ SA + +SL+ VIL
Sbjct: 200 TAKGGGTRTYTWYNTNKLLGSYKGATGAKTGTGTAAGPCLIFSATKNGKSLVGVILN--- 256
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
+ R + +L GF KT + QQ+
Sbjct: 257 DSNRYADAGKMLDYGFGKKTTSTLKVKPLPQGAQQD 292
>gi|325277519|ref|ZP_08143117.1| D-alanyl-D-alanine endopeptidase [Pseudomonas sp. TJI-51]
gi|324097346|gb|EGB95594.1| D-alanyl-D-alanine endopeptidase [Pseudomonas sp. TJI-51]
Length = 312
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/242 (21%), Positives = 91/242 (37%), Gaps = 8/242 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L+D NT + N+ D AS+TKLMTA VV MLT I +
Sbjct: 45 LASGSALLIDLNTNQELYSNHADRVVPIASVTKLMTAMVVLDAKLPMDEMLTMTIANNPE 104
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + GS + L + ++ S N A ++A + F++ MN +++L
Sbjct: 105 ---MKGVYSRVRPGSQLNRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSL 161
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---- 201
G++ T ++ G+ T +L K + + K + + Y
Sbjct: 162 GMAHTRYVEPTGLSTQNVSTARDLSKLLMASRKYPMLSELSTTREKTVAFRKPNYTLGFR 221
Query: 202 -NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
+ + KTGFT +G +V ++ + VIL A + T ++ L
Sbjct: 222 NTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYTHFADASRLR 281
Query: 261 SM 262
Sbjct: 282 QW 283
>gi|89898744|ref|YP_515854.1| penicillin-binding protein 5 [Chlamydophila felis Fe/C-56]
gi|89332116|dbj|BAE81709.1| penicillin-binding protein 5 [Chlamydophila felis Fe/C-56]
Length = 433
Score = 118 bits (296), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/341 (16%), Positives = 118/341 (34%), Gaps = 40/341 (11%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL-----KEKKAMLTT 78
+ ++ ++G ++ D PAS+TK+ TA + +
Sbjct: 29 PETRGNAAAVIHADSGKILYAKDIDKKIYPASMTKIATALFILKKHPEVLNRFITVKQDA 88
Query: 79 PITISKNASEYPPSNSTFKK------------GSTMTLDNALKLLIVKSANDIAVAIAES 126
+I+ A + S ++ + L++ SAND A +A +
Sbjct: 89 IASITPQAKKQSGYRSPPHWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANTLATA 148
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF----- 181
++ +F++ +N + LG THF N HG+ HYTTARD+ + +
Sbjct: 149 CSESVAEFMKQLNTFLRELGCEHTHFNNPHGLHHPNHYTTARDLTRIMRECLKEPLFRQV 208
Query: 182 --PQYMHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
+ + N + + A G KTG T +G N++ +A +
Sbjct: 209 IRTTNYKMAPTNLSQERVLNLTNKLILPGSTYYYPPALGGKTGTTKDAGKNLIFAAKKHG 268
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296
+S+I + G + +L F R+ + + + + + +V
Sbjct: 269 RSIITIAAGYPAMGELYEDVIALCEGVFNEPLLRRYLIPPTEKYTLR------LGLLGKV 322
Query: 297 CTTQKEIINYNTQMKEAKDKESH-------FIDFEKITLLK 330
+ + Y+ E ++ ++ + LL
Sbjct: 323 SIPLPQGVYYDFYASEEEEHQTISFVPHATKFPIHRGDLLG 363
>gi|330467947|ref|YP_004405690.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Verrucosispora
maris AB-18-032]
gi|328810918|gb|AEB45090.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Verrucosispora
maris AB-18-032]
Length = 420
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/250 (20%), Positives = 88/250 (35%), Gaps = 15/250 (6%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFLKEKKAMLTTPITIS 83
+ + D +TG V+ P PAS+ KL+ T + I
Sbjct: 89 TATSWVVADLDTGEVLGGCGPHEYATPASVQKLLLAATMLPRLDPAEVVTITAGDLD-IE 147
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+S + T+ L L+ + + ++ MN ++
Sbjct: 148 PGSSAVGLVAGGRYRIETLWLGLLLRSGNEVANALARLG---GGADGMAGGLRAMNEQAR 204
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-------HYFQIKGLEIK 196
LG TH G+ G +T+A D+A+++ D K
Sbjct: 205 QLGAYQTHAATPSGLDGPGQFTSAYDLALIARACFDDEHFRRYVATREADIPAQPKQRAK 264
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKV 255
G N N + + GA G KTG+T + V +A + + L+ +LGA + R +
Sbjct: 265 GFTIDNDNQLLYRYPGALGGKTGYTDLARHTYVGAAERNGRRLVVTLLGADVIDQRGWQQ 324
Query: 256 SASLLSMGFY 265
A+LL GF
Sbjct: 325 GAALLDWGFA 334
>gi|118471560|ref|YP_886772.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
MC2 155]
gi|118172847|gb|ABK73743.1| D-alanyl-D-alanine carboxypeptidase [Mycobacterium smegmatis str.
MC2 155]
Length = 275
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 88/242 (36%), Gaps = 11/242 (4%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ + D +TG V+A P + PAS K + A VV + +
Sbjct: 43 PAKAWLVADMDTGRVLASKDPYGSYAPASTIKPLLAMVVLDH-----LRPDNFARANASH 97
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
++ S K G T L L++ S ND A +A+ L MN + +G
Sbjct: 98 TKVECSCVGLKPGQPYTTRQLLDALLMVSGNDAANMLADMLGGPRVAV-AAMNRKAAAVG 156
Query: 147 LSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
T + G+ TT D+A++ ++P + + GK N
Sbjct: 157 ARNTRAASPSGLDGPGWESLTTPHDLAVIFRAAL-NYPVIAQILRQTTAQFPGKTLTYQN 215
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
+ + G G KTG+T + V +A +G++ L+ V + + L GF
Sbjct: 216 ELLTRYPGDIGGKTGYTNLARKTYVGAAQRGNRRLVVVQMYGTG--DLYDQAIRLFDYGF 273
Query: 265 YN 266
Sbjct: 274 SQ 275
>gi|300119675|ref|ZP_07057217.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
SJ1]
gi|298722970|gb|EFI63870.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
SJ1]
Length = 279
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/269 (21%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPNITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+A+++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|225866993|ref|YP_002752371.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
03BB102]
gi|225787746|gb|ACO27963.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus 03BB102]
Length = 279
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 56/269 (20%), Positives = 106/269 (39%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLEN-----VTEDEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+A+++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|269128396|ref|YP_003301766.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermomonospora curvata
DSM 43183]
gi|268313354|gb|ACY99728.1| Serine-type D-Ala-D-Ala carboxypeptidase [Thermomonospora curvata
DSM 43183]
Length = 447
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/293 (18%), Positives = 101/293 (34%), Gaps = 33/293 (11%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++ ++ P Y + D TG V+A P + PAS K++TA +
Sbjct: 64 IVVDVGPGAKAPPKIAAGAYIVADAGTGQVLAAKNPHGRFLPASALKMLTAVALIPK--- 120
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ ++ E S T + + L++ S ND A+A+A++
Sbjct: 121 --LDPNATVRPTRETCEVEGSKVGMTPKLTYKVSDLFHALLMVSGNDAALALAQAAGGVR 178
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQH------GHYTTARDMAILSWR--------- 176
MN ++ L + T + +G+ +T+ D+A++ +
Sbjct: 179 AAL-DSMNAEARRLQANDTLAGSTNGLDVDLGLTVKTQHTSVYDLALIMRQGLKMPQLRA 237
Query: 177 IKTDFPQYMHYFQIKGL-----EIKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFN 227
Y K +I G + + GA G K GFT A+G
Sbjct: 238 YIGKNHHYWPAPPTKEQRKKGKKIGGYPIYSHIRLLPGQRYEYPGAIGGKNGFTMAAGQT 297
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
V +A + ++LI +L LL GF + + +++
Sbjct: 298 FVGAAERNGRTLIVALLRG---ENLWPDVTKLLDWGFAYGPRVRPVGVLVEPV 347
>gi|229072497|ref|ZP_04205699.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
gi|228710473|gb|EEL62446.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
Length = 273
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 9 FTGMIFFSYAQRQQSVRADQPNITGQYGVTIDADTGEILYGKREDERSYPASIAKMMTTL 68
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 69 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 124 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 183
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 184 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 244 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 271
>gi|120611767|ref|YP_971445.1| murein-DD-endopeptidase [Acidovorax citrulli AAC00-1]
gi|120590231|gb|ABM33671.1| murein-DD-endopeptidase [Acidovorax citrulli AAC00-1]
Length = 371
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 97/248 (39%), Gaps = 8/248 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ K ++D +T V+ ASLTKLMT ++ +
Sbjct: 103 SVTDPLDLKSSVALVIDQDTQEVLLSKNDHAVLPIASLTKLMTGLLISEAK----LPMDE 158
Query: 79 PITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
PITI+++ + +S+ +T+T L L ++ S N A A+ + + FV
Sbjct: 159 PITITQDDVDTEKFSSSRLAVGTTLTRGEMLHLALMSSENRAAHALGRTFPGGLEAFVAR 218
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN ++ +G++ T ++ G+ H + +++ + + + +
Sbjct: 219 MNAKARLIGMTETRYVEPTGLSSHNQSSARDLATLVNVAHADPLLRELTTSPGYEVAVGR 278
Query: 198 KKYP--NTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ NTN V G KTG+ +G +V A + LI V L + + +R
Sbjct: 279 RTLHFNNTNRLVKNPAWDIGLQKTGYISEAGRCLVMQAHIAGRKLIMVFLDSAGKFSRLG 338
Query: 255 VSASLLSM 262
+ +
Sbjct: 339 DAERVRHW 346
>gi|21222221|ref|NP_628000.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)]
gi|256786685|ref|ZP_05525116.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
gi|5457246|emb|CAB46934.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
coelicolor A3(2)]
Length = 314
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 61/258 (23%), Positives = 108/258 (41%), Gaps = 16/258 (6%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK-KAMLTTPITIS 83
+ +++ TG + D + S TK+MTA VV S K A +T + S
Sbjct: 57 SIAARGGFVMNNATGRSLYTKAADTRRSTGSTTKIMTAKVVLSQPKLNLDAKVTIQMAYS 116
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ------H 137
S++ G +T+ L L++ S D A A+A+ + +
Sbjct: 117 DYIVSKNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGRTRAARVKSFIGK 176
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM---------HYF 188
MN T+K+LGL THF + G+ +Y+T RD+ ++ +
Sbjct: 177 MNATAKSLGLKNTHFDSFDGIGNGKNYSTPRDLTKIASSAMKNSTFRTIVKTKKYTAKTR 236
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
KG + NTN +G++ GA G+KTG + + +V +A + +++I +L +
Sbjct: 237 TKKGGTRTMAPWTNTNTLLGSYSGAIGVKTGSGPEAKYCLVFAATRKGKTVIGTVLASSS 296
Query: 249 RNTRNKVSASLLSMGFYN 266
R K + L++ F
Sbjct: 297 SAQRAKDATKLMNYAFTK 314
>gi|312869422|ref|ZP_07729583.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus oris
PB013-T2-3]
gi|311095085|gb|EFQ53368.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus oris
PB013-T2-3]
Length = 407
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 61/294 (20%), Positives = 123/294 (41%), Gaps = 33/294 (11%)
Query: 1 MRQFLVIIAMA--MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+++ L ++ + +L+ + +E ++D +TG V+ E + AS++K
Sbjct: 3 IKRVLRLVMVLPLVLAELTTGALASERVNARAAVMIDASTGQVLYEQNANQKLPVASISK 62
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF----KKGSTMTLDNALKLLIVK 114
L+T VV LK++ T + +S + + + ++G + T+ L +VK
Sbjct: 63 LLTVAVVHDELKQRIITANTRVNVSADVAAIASDPAYSAIGVQEGQSYTVRELLNAAMVK 122
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG------------ 162
SA+ +A+AE+ ++F M+ +K +GL +N G+
Sbjct: 123 SADGATLALAEADGSNLEEFNLKMDQKAKEIGLKNYTIVNPVGLTNGDLKGLKLEQYANN 182
Query: 163 --HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFLG--- 212
+ TA D+A+L+ + +P + K + K K N N +
Sbjct: 183 AENAMTANDVALLARYLVQTYPDLLQVTAQKDADFYIAKDKTVKADNLNKMLPGEQYAVP 242
Query: 213 ---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR--NTRNKVSASLLS 261
DG+KTG + A+G + V++ + +I V+L A + R + L +
Sbjct: 243 GVKIDGLKTGTSAAAGPSFVSTGVYRGHRVITVVLHANGDGGDARFAATRQLYN 296
>gi|302379860|ref|ZP_07268343.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
ACS-171-V-Col3]
gi|302312338|gb|EFK94336.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
ACS-171-V-Col3]
Length = 384
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 74/341 (21%), Positives = 146/341 (42%), Gaps = 13/341 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
LV+ + + + +K+ Y ++ + + + P ASLTK+MT +
Sbjct: 2 LVLAIVFQPALSKADSKLGFEDKVKAYYTIEQDYSQELLNYNENKPLAIASLTKIMTYVL 61
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
V + K L I I ++ S KKG +T+++ ++ +++ S ND A +A
Sbjct: 62 VMEDINANKYKLDDKIKIQTQYAKPEASTMQLKKGEELTVNDLIRGMMIVSGNDAADELA 121
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKTDFP 182
+ KFV+ MN + L L + F +A G + +A+D+A L+ ++P
Sbjct: 122 VKSEGSVGKFVERMNKKAAELELESAKFYSASGYPENDKENLMSAKDLAKLTTYTINNYP 181
Query: 183 QYMHYFQIKGLEIKGKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASA----IQGD 236
Q ++Y + + L + +KY T +G G DG KTG T +G+ ++ +
Sbjct: 182 QVLNYTKTQKLVMPSRKYEAATTVPFLGKIEGVDGFKTGTTEKAGYCLITTMSLKPNNPK 241
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296
+++V++GA + RN +L + +N + + L + V + E+
Sbjct: 242 NKVVSVLMGAPTKYDRNTYQKIMLEYVRNSFEPMNILNS--EKPIETKLVDSVVDKKVEI 299
Query: 297 CTTQKEIINYNTQM---KEAKDKESHFIDFEKITLLKNKIT 334
T+ I YN + ++ K+ +K ++ I
Sbjct: 300 YPTEDVSILYNNKTGLQQKVDIKKDLKAPLKKGQVVGKVII 340
>gi|223985343|ref|ZP_03635415.1| hypothetical protein HOLDEFILI_02721 [Holdemania filiformis DSM
12042]
gi|223962698|gb|EEF67138.1| hypothetical protein HOLDEFILI_02721 [Holdemania filiformis DSM
12042]
Length = 498
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 62/333 (18%), Positives = 117/333 (35%), Gaps = 20/333 (6%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
K + ++D +TG V+ + + PAS+TK+MT V + +T +
Sbjct: 86 PQIKSDFVYMVDMDTGQVMIDKGSEDQIYPASMTKMMTLLVAIENAPALDSTMTLGPEVF 145
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+E S + FK+G T+++ + L L + S D A A+A +E FV MN +
Sbjct: 146 AGLAEAHASVAGFKQGETVSVKDLLYGLFLPSGADAAQALALEEAGSETAFVGLMNEKAA 205
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK------- 196
LG++ THF+N G+ HYTT RD+ L + + +
Sbjct: 206 ELGMTGTHFVNTSGLHDPDHYTTLRDLETLMRYALENPTFNEIFQTRRYTATPSLHTGGL 265
Query: 197 ------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K +T+ A G KTG+T +G + + A + + + A N
Sbjct: 266 VWESTLFAKISSTDPAKIDNDSILGGKTGYTNPAGLCLASIAEKNGTRYMLITAHAPVSN 325
Query: 251 TRNK--VSASLLSMGFYNKTDRKKINYIIKDFYQQNL-----SNEVPNISEEVCTTQKEI 303
T + + + + + + + + ++
Sbjct: 326 TPYHILDADHIYDYFYDHYSKQTVLTADQTLLETKVPFVLFNDKLTLKAGTDIVLNLPNG 385
Query: 304 INYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + E + E+ L +
Sbjct: 386 YDLSALQIETQLDGELQAPIEEGQRLGMATITR 418
>gi|298241559|ref|ZP_06965366.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
gi|297554613|gb|EFH88477.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
Length = 313
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 8/245 (3%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
++D V+ ++ AS TK+MTA V + T +
Sbjct: 70 NGSSAYIIDNANNRVLFDSDSQRSVPIASTTKIMTAVVTIENSNLDQI--VTVQQADLDQ 127
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
S + G + + + L L++ S +D A+ +A + + FV MN ++ LG
Sbjct: 128 LPPEASVAQLHVGDYLRIRHLLYGLLLPSGSDAALTLARVVGGSTDGFVAMMNAKAQALG 187
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKT-----DFPQYMHYFQIKGLEIKGKKYP 201
L+ THF + HGV+ G+Y++A+D+ L+ + + Y + +
Sbjct: 188 LAHTHFSSPHGVIPDGNYSSAQDLVKLARYAMRYQIFAEIVRQTEYHIPPTQYNRRYDWY 247
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLL 260
NTN + ++ G G+KTG +G+ +V +A++ ++ L LGA + N LL
Sbjct: 248 NTNQLLTSYSGVIGIKTGSGSGAGYCVVFAAVRNNRLLYGAELGAPGSFDVLNSDVTRLL 307
Query: 261 SMGFY 265
F
Sbjct: 308 DKAFA 312
>gi|324328943|gb|ADY24203.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 279
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|227511580|ref|ZP_03941629.1| possible S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus
buchneri ATCC 11577]
gi|227085225|gb|EEI20537.1| possible S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus
buchneri ATCC 11577]
Length = 442
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 59/370 (15%), Positives = 135/370 (36%), Gaps = 44/370 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK--------LPYYTLLDTNTGHVIAENYPDHPWNP 53
+ VI+ +A + + A+ ++D +G ++ +
Sbjct: 23 KLMAVILVLACVIAALVPSATAQAKSKKPKYKFEAKEIYVMDAKSGQMLYQKNSHQKRPI 82
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
ASL+KLMT Y+ + + + + +SK + S + +K L
Sbjct: 83 ASLSKLMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELGTFKIKKSKQYTVKQLYQ 142
Query: 114 KSANDIAVAIAESLCK-----TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH------- 161
+ + + A +L + + KF+ MN ++ G+ HF+++ G+
Sbjct: 143 AALIASSNSSAIALGELVAGGSNTKFINLMNRQAQKWGI-DAHFVSSSGLDNTDLTTYKL 201
Query: 162 ---------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-- 210
+ +A+ ++ ++ ++ +FP + + +++ + N+N +
Sbjct: 202 QVPGTGKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKVGNQVLVNSNRLLKGDAF 261
Query: 211 ----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
DG+KTGFT +G + S + LIA I+ + NT L+ N
Sbjct: 262 YKKSEHVDGLKTGFTDTAGLCLTVSFWHKGRHLIATIIDS---NTIFSSMEKLVRAIEKN 318
Query: 267 KTDRK-KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
T I+ I + +S + + T+ + + + + + +K
Sbjct: 319 YTTETYLIHQNIFTIGNRKVSASPQDSRATIWKTESSKPSISDSYE----LTTQKLPVKK 374
Query: 326 ITLLKNKITK 335
+ + N + K
Sbjct: 375 GSTVGNVLVK 384
>gi|262283155|ref|ZP_06060922.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus sp. 2_1_36FAA]
gi|262261407|gb|EEY80106.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus sp. 2_1_36FAA]
Length = 450
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/318 (20%), Positives = 122/318 (38%), Gaps = 40/318 (12%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
++D NTG V+ ++ D +PAS++KLMT Y++F + + K T I S+
Sbjct: 34 RSSLIIDGNTGDVLWQDNIDEVRDPASMSKLMTLYLLFEAMGQGKLSEDTIIKASQTDQN 93
Query: 89 YPPSNSTFKKG-----STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ ++ S + F+ MN+ +K
Sbjct: 94 IAGIYEISNNKIVAGVDYTISELITMTVVPSSNATTVMIANYLSNNDPDAFLDQMNSKAK 153
Query: 144 NLGLSATHFMNAHG---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
LG++ TH+ NA G + TTARD+AIL++ +P + Y
Sbjct: 154 ELGMTNTHWYNASGAAASSFKGLYTPQRYDNNAANQTTARDLAILAYNFVKKYPGILKYT 213
Query: 189 QIKGLEIKGKKYPNTNWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ +K + + G DG+KTG + FN +A+ +G+Q +
Sbjct: 214 NKPVVTVKKGTPYEETFETYNYSVPGAKYGLEGVDGLKTGSSPRGAFNYIATVKRGEQRI 273
Query: 240 IAVILGALDRNT------RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
I+VI+G D + R+ +L+ + + +K + + + +
Sbjct: 274 ISVIMGVGDWSDQDGEYYRHPFGNALIEKAYADYEYKKLLTAGEH-----KIDGKTYKLE 328
Query: 294 EEVCTTQKEIINYNTQMK 311
++ T K+ N +K
Sbjct: 329 KDFYGTVKKGTNPKLVVK 346
>gi|227523786|ref|ZP_03953835.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii
ATCC 8290]
gi|227089101|gb|EEI24413.1| S11 family D-Ala-D-Ala carboxypeptidase [Lactobacillus hilgardii
ATCC 8290]
Length = 442
Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats.
Identities = 59/370 (15%), Positives = 135/370 (36%), Gaps = 44/370 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK--------LPYYTLLDTNTGHVIAENYPDHPWNP 53
+ VI+ +A + + A+ ++D +G ++ +
Sbjct: 23 KLMAVILVLACVIAALVPSATAQAKSKKPKYKFEAKEIYVMDAKSGQMLYQKNSHQKRPI 82
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
ASL+KLMT Y+ + + + + +SK + S + +K L
Sbjct: 83 ASLSKLMTLYLTKKAIDQHQLSWNQKVPVSKPLIKMSKSYELGTFKIKKSKQYTVKQLYQ 142
Query: 114 KSANDIAVAIAESLCK-----TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH------- 161
+ + + A +L + + KF+ MN ++ G+ HF+++ G+
Sbjct: 143 AALIASSNSSAIALGELVAGGSNTKFINLMNRQAQKWGI-NAHFVSSSGLDNTDLTTYKL 201
Query: 162 ---------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-- 210
+ +A+ ++ ++ ++ +FP + + +++ + N+N +
Sbjct: 202 QVPGTGKKAQNMVSAKAISTVAAKVLGEFPSITKWSRKPSMKVGNQVLVNSNRLLKGDAF 261
Query: 211 ----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
DG+KTGFT +G + S + LIA I+ + NT L+ N
Sbjct: 262 YKKSEHVDGLKTGFTDTAGLCLNVSFWHKGRHLIATIIDS---NTIFSSMEKLVRAIEKN 318
Query: 267 KTDRK-KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
T I+ I + +S + + T+ + + + + + +K
Sbjct: 319 YTTETYLIHQNIFTIGNRKVSASPQDSRATIWKTESSKPSISDSYE----PTTQKLPVKK 374
Query: 326 ITLLKNKITK 335
+ + N + K
Sbjct: 375 GSTVGNVLVK 384
>gi|299534813|ref|ZP_07048142.1| penicillin-binding protein dacF precursor [Lysinibacillus
fusiformis ZC1]
gi|298729658|gb|EFI70204.1| penicillin-binding protein dacF precursor [Lysinibacillus
fusiformis ZC1]
Length = 278
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/260 (21%), Positives = 106/260 (40%), Gaps = 13/260 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++++++ + ++ +F + S + LL+ G V+ E D
Sbjct: 1 MKKWMLLGCICIMVFLFYYTSKTYEFTHLELPSLHSRNALLLNEQ-GEVLYEKNADAIIY 59
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PASLTK+MTA V + N + S + F+ G +T ++ L +
Sbjct: 60 PASLTKIMTAIVAIEMTDNLQTQTIVEPQTIANYTAQNASMAGFQAGDFVTTEDLLYGTL 119
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S D +A+++ +E KFV MNN ++ LG+ T+F+N G+ H ++ RD++
Sbjct: 120 LASGADATGTLADAVAGSEGKFVTLMNNKAQELGMHDTYFVNTSGLHDEAHVSSVRDISK 179
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG----ADGMKTGFTCASGFNI 228
L + Y + + TN G G KTG+T +G +
Sbjct: 180 LLRYALENPTFYQIFTSKSYTTYVPNQLIITNSLFTKLPGLDSPIIGGKTGYTPEAGLCL 239
Query: 229 VASAIQGDQSLIAVILGALD 248
+ +S + + A
Sbjct: 240 ATIIEKEGKSFLFITTNAPS 259
>gi|224475783|ref|YP_002633389.1| penicillin binding protein 4 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420390|emb|CAL27204.1| penicillin binding protein 4 [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 429
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 78/367 (21%), Positives = 146/367 (39%), Gaps = 52/367 (14%)
Query: 1 MRQFLVI-IAMAMLSNIFPFLSIAETNKLPYYTLLDT------------------NTGHV 41
M++ +++ + + S I S A+TN + + TG V
Sbjct: 1 MKKIILLTLLIFFASTIITPFSEADTNTPSPAQVANEYGYNISDDFNPEGAVNISQTGQV 60
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFK 97
+ + + D W PAS+TKLMT Y+ +K K L + I+++ SN+
Sbjct: 61 LYDYHMDKKWYPASMTKLMTMYLTLEAVKAHKLSLNDKVKITEDDYRMSTLPKLSNTKLY 120
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
G T T+ L++ + S+N A+ +A+ + F MN +K LG++ TH++N G
Sbjct: 121 PGETYTIKELLQITVSASSNAAALILAKKVSGNTSDFTDKMNKKAKELGMTKTHYVNPTG 180
Query: 158 VVQ--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+A+D AILS R+ D P+ +++ + G Y
Sbjct: 181 AENNLLQDFAPKKYKNEMSSRASAKDYAILSQRVIQDTPKILYFTKQLAPTQHGVTYYTF 240
Query: 204 NWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNTRN 253
NW+ G DG+KTG + + +N + + + I+GA D RN
Sbjct: 241 NWSLEGAELGLKGTDGLKTGSSDIADYNHTITTKRDGFRIDQAIMGAGDFKHLGGEKERN 300
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
K+ S+++ F K ++ Q ++ + + +++ +
Sbjct: 301 KMGNSIMNRSFDQYKYVKILSKGE-----QKINGKKYYVKKDLYDVLPKNYTKKDYKFVV 355
Query: 314 KDKESHF 320
+D + H
Sbjct: 356 EDGKVHI 362
>gi|229181304|ref|ZP_04308634.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
gi|228602197|gb|EEK59688.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus 172560W]
Length = 279
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D NTG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPNITGQYGVTIDANTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRPGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|221067891|ref|ZP_03543996.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Comamonas
testosteroni KF-1]
gi|220712914|gb|EED68282.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Comamonas
testosteroni KF-1]
Length = 402
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 99/248 (39%), Gaps = 8/248 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+S + ++D +T V+ ASLTKLMT ++ + +
Sbjct: 141 SVSDPLDLQSSVAYVIDQDTHEVLLSKNDQAVLPIASLTKLMTGLLISQA----RLPMDE 196
Query: 79 PITISKNASEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
ITI+++ + +S+ + G+T+T + L ++ S N A A+ + +FVQ
Sbjct: 197 MITITQDDVDTEKHSSSRLRVGTTLTRAEMMHLALMSSENRAAHALGRTYPGGLSQFVQL 256
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN+ + LG+ T ++ G+ + +++ + + +
Sbjct: 257 MNSKALQLGMKDTRYVEPTGLSSSNQSSARDLARLVAVAHADPLMREYSTSPGYEVAVGR 316
Query: 198 KK--YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ + NTN V + G KTG+ +G +V A + LI V L + + +R
Sbjct: 317 RTLQFNNTNRLVKSDNWDIGLQKTGYISEAGRCLVMQAHVAGRKLIMVFLDSAGKFSRLA 376
Query: 255 VSASLLSM 262
+ +
Sbjct: 377 DAERVRHW 384
>gi|319637748|ref|ZP_07992514.1| D-alanyl-D-alanine-endopeptidase [Neisseria mucosa C102]
gi|317400903|gb|EFV81558.1| D-alanyl-D-alanine-endopeptidase [Neisseria mucosa C102]
Length = 318
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/262 (22%), Positives = 105/262 (40%), Gaps = 11/262 (4%)
Query: 7 IIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
A++ + ++A + + TG V+ + PD AS++KLM+A VV
Sbjct: 56 AFALSHADQVEAQAALAGPLLSSQSALIFNNKTGEVLYQKNPDRVMPIASISKLMSAMVV 115
Query: 66 FSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+ PITI++ + S G+T+T L L ++ S N A+
Sbjct: 116 LDA----HLDMNEPITITEAEIDRLKGTGSRLSIGTTLTRGELLHLSLMSSENRATHALG 171
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
+ FV MN +++LG+S++ F G+ + +TARD+ +
Sbjct: 172 RTYPGGMSAFVAAMNAKAQSLGMSSSRFYEPTGL-NFQNVSTARDLNRMVAAASKYPLIR 230
Query: 185 MHYFQIKGLEI---KGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ G + Y N+N V + KTG+ +G ++V A +Q +
Sbjct: 231 KNSTSNYGSVWTANGRQNYKNSNALVREGSWNIELQKTGYIREAGRSMVVKANVQNQPIT 290
Query: 241 AVILGALDRNTRNKVSASLLSM 262
V+L + TR + + S
Sbjct: 291 IVLLNSPSSTTRVNDARKIESW 312
>gi|222098460|ref|YP_002532518.1| serine-type d-ala-d-ala carboxypeptidase (d-alanyl-d-alanine
carboxypeptidase) [Bacillus cereus Q1]
gi|221242519|gb|ACM15229.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
carboxypeptidase) [Bacillus cereus Q1]
Length = 279
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + + K N A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|330808569|ref|YP_004353031.1| serine-type D-Ala-D-Ala carboxypeptidase (D-alanyl-D-alanine
carboxypeptidase) [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376677|gb|AEA68027.1| putative serine-type D-Ala-D-Ala carboxypeptidase
(D-alanyl-D-alanine carboxypeptidase) [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 312
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 65/282 (23%), Positives = 108/282 (38%), Gaps = 24/282 (8%)
Query: 1 MRQFLVIIAMAMLSN---IFPFLSIAETNKLP-----------YYTLLDTNTGHVIAENY 46
M+ L II++ + I + ET P LLD T V+ +
Sbjct: 1 MKIRLSIISLFIAFTGSFITQNVVAQETIAAPRDTTKLQVASGSAMLLDLQTDKVVYSSN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLD 105
PD AS+TKLMT +V + L I+I+ N E S K S ++
Sbjct: 61 PDVVVPIASVTKLMTGLIVLDAKQ----NLDEYISITIANTPEMKGVFSRVKLNSELSRR 116
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ L + ++ S N A ++A F+ MN +K LG+++TH++ G+ H T
Sbjct: 117 DVLLIALMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMTSTHYVEPTGLSIHNVST 176
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-----PNTNWAVGTFLGADGMKTGF 220
+L K + + K + + Y + KTGF
Sbjct: 177 ARDLTKLLIAARKYPLLSELSTTKEKTVTFRKPVYSLGFRNTDHLIHKANWDIQLTKTGF 236
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
T +G +V G++ + VIL A + T ++ + S
Sbjct: 237 TNEAGHCLVLVTKMGNRPMALVILDAFGKFTHFADASRIRSW 278
>gi|227113033|ref|ZP_03826689.1| D-alanyl-D-alanine endopeptidase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 315
Score = 118 bits (294), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/281 (19%), Positives = 107/281 (38%), Gaps = 24/281 (8%)
Query: 2 RQFLVIIAMAMLSNIFP-----FLSIAE---------TNKLPYYTLLDTNTGHVIAENYP 47
+ F + + ++ + ++ A ++D H++ + P
Sbjct: 3 KNFKLSLFGLLVLSTHAVMLPQAVAKAPTYSAGTAHQEIASGSAMVVDLRDNHILYSSNP 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D AS+TKLMTA VV + +++ I+ +K S + S ++ +
Sbjct: 63 DVVVPIASVTKLMTALVVLDANQPLDEIISVDISQTKE---MKGVYSRVRLNSEISRRDM 119
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
L L ++ S N A ++A + F++ MN ++ LG++ T ++ G+ + +TA
Sbjct: 120 LLLALMSSENRAAASLAHHYPGGYQAFIRAMNAKARALGMAHTRYVEPTGL-SINNVSTA 178
Query: 168 RDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFT 221
RD+ L + + + + NTN V KTGFT
Sbjct: 179 RDLTKLLIASKQYPLLGQLSTTQEKTATFSHPAYSQPFRNTNHLVYKADWSIQLTKTGFT 238
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + + + V+L A + T + L
Sbjct: 239 NQAGHCLVMRTVINQRPVALVVLDAFGKYTHFADANRLRKW 279
>gi|289770578|ref|ZP_06529956.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
gi|289700777|gb|EFD68206.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
Length = 260
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 61/259 (23%), Positives = 108/259 (41%), Gaps = 16/259 (6%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK-KAMLTTPITI 82
+ +++ TG + D + S TK+MTA VV S K A +T +
Sbjct: 2 PSIAARGGFVMNNATGRSLYTKAADTRRSTGSTTKIMTAKVVLSQPKLNLDAKVTIQMAY 61
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ------ 136
S S++ G +T+ L L++ S D A A+A+ + +
Sbjct: 62 SDYIVSKNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGRTRAARVKSFIG 121
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM---------HY 187
MN T+K+LGL THF + G+ +Y+T RD+ ++ +
Sbjct: 122 KMNATAKSLGLKNTHFDSFDGIGNGKNYSTPRDLTKIASSAMKNSTFRTIVKTKKYTAKT 181
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
KG + NTN +G++ GA G+KTG + + +V +A + +++I +L +
Sbjct: 182 RTKKGGTRTMAPWTNTNTLLGSYSGAIGVKTGSGPEAKYCLVFAATRKGKTVIGTVLASS 241
Query: 248 DRNTRNKVSASLLSMGFYN 266
R K + L++ F
Sbjct: 242 SSAQRAKDATKLMNYAFTK 260
>gi|331700813|ref|YP_004397772.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
NRRL B-30929]
gi|329128156|gb|AEB72709.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
NRRL B-30929]
Length = 434
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 59/362 (16%), Positives = 124/362 (34%), Gaps = 35/362 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + I+ M+ +S + + + + ++D TG V+ + ASL+KLM
Sbjct: 19 MMTLVSILTMSAIS-VSAKSANQQKFQAKEAYVMDAETGQVLYQKNGSTKRPIASLSKLM 77
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ + + + + S + + ++ L + +
Sbjct: 78 TLYLTKKAIDNHQITWNQKVPVDDQLRRMSKSYEVGGFRIKRSKEYTVRDLYKAALIASS 137
Query: 121 VAIAESLCK-----TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-------------- 161
A +L K +F++ MN + G+ F+++ G+
Sbjct: 138 NPSAIALGKLVGGGNNTEFIKMMNEQAHAWGI-DATFVSSSGLDNTDLSKYHYQVPHTTS 196
Query: 162 --GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW------AVGTFLGA 213
+ +A+ ++ ++ ++ FP + + +++ + N+N
Sbjct: 197 KAQNMVSAKAISTVAAKVLEIFPTITQWSKQPSMKVGNQVLVNSNRLLPGSAFYHKSTHV 256
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI 273
DG+KTGFT +G I + + LIA I+ + NT L+S K
Sbjct: 257 DGLKTGFTVNAGLCITVTYWHDGRHLIATIIDS---NTLYTSMNKLISTVNQQYQPTKVA 313
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ P E Q++ + + + K + K L+ N I
Sbjct: 314 LKSHAFSIDGHQLTATPK-DPEAVIWQRKGTDGSHVTNYSATK--TTLPITKGQLVGNAI 370
Query: 334 TK 335
K
Sbjct: 371 VK 372
>gi|260598596|ref|YP_003211167.1| D-alanyl-D-alanine endopeptidase [Cronobacter turicensis z3032]
gi|260217773|emb|CBA32213.1| D-alanyl-D-alanine endopeptidase [Cronobacter turicensis z3032]
Length = 269
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/243 (22%), Positives = 97/243 (39%), Gaps = 12/243 (4%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KN 85
++D T V+ ++PD AS+TK+MTA VV L +T+ +
Sbjct: 2 ASGSAMIVDLRTNEVLFSSHPDLVRPIASITKVMTAMVVLDAS----LPLDEMLTVDISH 57
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
E S + S ++ N L L ++ S N A ++A F++ MN +K L
Sbjct: 58 TPEMKGIYSRVRLNSQISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKAL 117
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
G+ T F+ G+ + +TARD+ L + + +
Sbjct: 118 GMRNTRFVEPTGL-SIHNVSTARDLTKLLIATKQYPLIGQLSTTREEMATFANPAYTLPF 176
Query: 201 PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN V KTGFT A+G ++ + ++ + V++ A + T ++ L
Sbjct: 177 RNTNHLVYRDNWNIQLTKTGFTNAAGHCLMMRTLIKNRPVTLVVMDAFGKYTHFADASRL 236
Query: 260 LSM 262
+
Sbjct: 237 RTW 239
>gi|295396423|ref|ZP_06806585.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevibacterium
mcbrellneri ATCC 49030]
gi|294970725|gb|EFG46638.1| serine-type D-Ala-D-Ala carboxypeptidase [Brevibacterium
mcbrellneri ATCC 49030]
Length = 403
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/261 (21%), Positives = 112/261 (42%), Gaps = 18/261 (6%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + + + +TG V+ + D +PAS+ KL+TA + L +
Sbjct: 39 TSPPKPAADAWLVANLDTGEVLVSHGEDVVSSPASVQKLLTALALVDELP----DVKKKH 94
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
IS+ ++ + + + ++D + +++ SAND A A+ E++ K + M+
Sbjct: 95 RISEADTQVDGTRVGLLRDNEYSIDLLFRSMLMSSANDSAYALGEAVGGQHKAL-ELMHR 153
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-----------HYFQ 189
++ LG+ +T G+ G TT D+ L+ + Y
Sbjct: 154 KARQLGMDSTVVGTTSGLDAPGQGTTIDDLLRLAHEFTKNKYLMKVVQTQTLDFPGGYDH 213
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K ++KG + N +G GA G+K G+T + + + +A +GD + AV+L A
Sbjct: 214 DKKKKVKGYQIQNHTRLIGLVEGAIGLKNGYTQEARGSFLGAATRGDTTYAAVVLRAQT- 272
Query: 250 NTRNKVSASLLSMGFYNKTDR 270
+R + +A LL+ F +
Sbjct: 273 QSR-QAAADLLNWAFNQTDPK 292
>gi|145478811|ref|XP_001425428.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392498|emb|CAK58030.1| unnamed protein product [Paramecium tetraurelia]
Length = 313
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 68/274 (24%), Positives = 112/274 (40%), Gaps = 37/274 (13%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT-PITI 82
+ + +LD TG +I AS+TK MTAYV ++ K T +++
Sbjct: 34 PSITAHTWVILDAQTGRLIWGKNEHSNREIASITKSMTAYVTIKICEQLKIDPTQVTVSV 93
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI------------------- 123
S+ A++ ++S ++G ++TL + L L++ S ND A AI
Sbjct: 94 SEYATQIGGTSSNLQEGDSLTLLDLLHGLMLPSGNDSAQAIAENFGVYLYFQSKYFQQKI 153
Query: 124 --------AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
+ + FV MN T++ LGLS T+F N HG+ + +TA D+A L +
Sbjct: 154 DSIDNDNNTIHVNNPAQYFVAEMNATAQKLGLSNTYFTNPHGLANRLNRSTAYDVAKLCY 213
Query: 176 RIK-------TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ + + K+ NTN + G G+KTG T +G +
Sbjct: 214 YAMKLPLFAQIVRTKEYSCTVTNLGQTRVLKWENTNKLLEQ--GFSGIKTGVTNDAGPCL 271
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+ I S I V+L + R S L+
Sbjct: 272 ASHFISRKHSYILVVLNCNSKEQRWVDSCRLIDW 305
>gi|237745522|ref|ZP_04576002.1| murein-dd-endopeptidase, serine peptidase, merops family s11
[Oxalobacter formigenes HOxBLS]
gi|229376873|gb|EEO26964.1| murein-dd-endopeptidase, serine peptidase, merops family s11
[Oxalobacter formigenes HOxBLS]
Length = 431
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 6/243 (2%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ K +LD + ++ E D AS+TKLMTA VV +++ +L
Sbjct: 179 PLSLKSNAALVLDESNLEILFEKNSDIALPMASITKLMTALVVVESMQDMNEILEITE-- 236
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
++ ++S + G+ MT N L L ++ S N A A+ + FV MN +
Sbjct: 237 -EDVDVQKHTSSRLRVGTKMTRANLLHLALMSSENRAAAALGRNYPGGISAFVNAMNIKA 295
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK--GKKY 200
+ LG+S + ++++ G+ + ++ + + ++ Y
Sbjct: 296 QVLGMSDSRYVDSSGLSSGNIASARDLAKLVMAAAQYPILRKYSTDTYYSIDDGLREMHY 355
Query: 201 PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN V KTG+ +G +V A+ + ++ V L + + R + +
Sbjct: 356 GNTNGLVHNPEWHIRLQKTGYISEAGQCLVMQAVINGRPIVMVFLDSKGKGARLADAQRI 415
Query: 260 LSM 262
S
Sbjct: 416 RSW 418
>gi|260663757|ref|ZP_05864644.1| D-alanyl-D-alanine [Lactobacillus fermentum 28-3-CHN]
gi|260551706|gb|EEX24823.1| D-alanyl-D-alanine [Lactobacillus fermentum 28-3-CHN]
Length = 431
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 58/338 (17%), Positives = 117/338 (34%), Gaps = 29/338 (8%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+D TG V+ + AS++KL+T V+ +K K T + ++K
Sbjct: 56 VNAKAVIAIDATTGQVLYAKNANTQLAIASISKLITVGVIEQEIKAGKLSWNTKVKVTKE 115
Query: 86 A----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
SN T G + T+ + ++KSA+ A+ ++ + + FV+ M
Sbjct: 116 EAKLSENTEYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQTF 175
Query: 142 SKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHY 187
K G++ N G+ + TA D+A L+ + ++P ++
Sbjct: 176 VKKAGVTDAKLYNQVGLTNSQMGSYGLKGVAKNAENEMTATDVAKLAQYLIKNYPSLLNI 235
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLG------ADGMKTGFTCASGFNIVASAIQGDQSLIA 241
++ I G N + DG+KTG + +G V++ +I
Sbjct: 236 TKMTSTTIDGTTVTTINKMLPGQSDAPTQVKIDGLKTGTSDKAGACFVSTGTYQGHRIIT 295
Query: 242 VILGAL-DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
V+L A + R +A+L + T + ++ ++ +
Sbjct: 296 VVLHATGGGDERFTQTANLYHLIANEYTAYTVQPSVAAMVPNGKVTTTTLTTQGKITLWK 355
Query: 301 KEII----NYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
K+ + K A +K ++
Sbjct: 356 KDGTLLSPSLAINSKAADKNGKLTAPVKKGQVVGELTY 393
>gi|42784193|ref|NP_981440.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
ATCC 10987]
gi|42740124|gb|AAS44048.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
ATCC 10987]
Length = 279
Score = 118 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPNITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + + K N A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|184156063|ref|YP_001844403.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum IFO
3956]
gi|183227407|dbj|BAG27923.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum IFO
3956]
Length = 417
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 70/348 (20%), Positives = 136/348 (39%), Gaps = 33/348 (9%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + + T +D TG V+ E + AS+ K++T V+ +++ K
Sbjct: 25 SAGAVANASSTVDARAAITIDAETGQVLYEKNATKRYPIASVIKILTLAVIEQDIEQGKL 84
Query: 75 MLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
I ISK +++ SN +G + T+ + ++ +++ SA+ A A+A + +
Sbjct: 85 KWDQKIKISKEVAKVANDWRFSNVQLNEGESYTVKSLVESMMIVSADGSAEALALASAGS 144
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWR 176
F Q M +K G++ N G+ + +A+D+A ++
Sbjct: 145 TAAFNQKMQAVAKEAGVTDAKIYNMIGLANGDLGEMRLKNVSKKAENQLSAKDVAKIARY 204
Query: 177 IKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFL------GADGMKTGFTCASG 225
+ +P + + K + + + N N + DG+KTG T +SG
Sbjct: 205 LVEKYPSVLEITKQKFVNFQVSDSQQYEMVNINSMLPQNAAASTHGEVDGLKTGMTDSSG 264
Query: 226 FNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
+ V + + LI V+L N + KV+ +++ + DF +
Sbjct: 265 YCFVGTGTFNGRRLITVVLKVPGEYNNQFKVTDAMIGQVLDKYQYLTVNK--LSDFKKGV 322
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
S V + ++ T + T + AK+ D E I L KNK
Sbjct: 323 QSVTVAHAEKKGPKTVGLTLKKATTLWLAKNTSLKKADVELI-LDKNK 369
>gi|262164415|ref|ZP_06032153.1| murein-DD-endopeptidase [Vibrio mimicus VM223]
gi|262026795|gb|EEY45462.1| murein-DD-endopeptidase [Vibrio mimicus VM223]
Length = 317
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 66/277 (23%), Positives = 112/277 (40%), Gaps = 12/277 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D T VI + PD AS+TKLMTA V K + T + I+
Sbjct: 44 QELAANSALVIDLKTNEVIYSSNPDAVRPIASVTKLMTAIVTLDA----KLPMDTKLPIT 99
Query: 84 -KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
K A E +S + GS ++ + L L ++ S N A ++A K F++ MNN +
Sbjct: 100 IKEAKEMKGVHSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNNKA 159
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-- 200
K LG+ T F+ G+ + + + +L K + + K + +Y
Sbjct: 160 KALGMKNTRFVEPTGLSEKNVSSARDLVLLLKASKKYPMLGQLSATEKKTVTFAKPRYSL 219
Query: 201 --PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
NTN V D KTGFT A+G +V G + + V+L + + +
Sbjct: 220 DFRNTNRLVFNDNWKIDLTKTGFTNAAGHCLVMRTQMGKRQVAFVVLDTKGKLSPVGDAN 279
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
L + + K + +Q ++ IS+
Sbjct: 280 RLRTWL--ETGKVTPLPADAKQYKKQRNQEQIAKISD 314
>gi|325982954|ref|YP_004295356.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nitrosomonas
sp. AL212]
gi|325532473|gb|ADZ27194.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Nitrosomonas
sp. AL212]
Length = 275
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/270 (22%), Positives = 108/270 (40%), Gaps = 13/270 (4%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M+Q F++ + + K + + +VI + D AS+TKL
Sbjct: 1 MKQVFILSCILFFYTGSSLAQKNNPDIKSQAALVFNAQNEYVIYDKNADKVMPIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSAND 118
MTA V + ITI + ++ S ++ LKL ++ S N
Sbjct: 61 MTAIVTLDA----RLSPNEIITIENADVDKLKYTTSRLPVGSKLSRHELLKLSLMSSENR 116
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----- 173
A A+ + + FV MN +K +G+ ++ F+ G+ + TARD+A L
Sbjct: 117 AAAALGRTYPGGTQAFVNAMNIKAKQMGMISSRFVEPTGL-SSNNVATARDLAKLVAASN 175
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASA 232
+ + +F + G + +Y N+N V + D KTG+ +G +V A
Sbjct: 176 RYTVIREFSTASQHSVSPGNKRGQLQYVNSNSLVRSQNWTIDVSKTGYLNEAGRCLVMHA 235
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSM 262
Q ++ V+L + +NTR + +
Sbjct: 236 KISGQPVVIVLLNSWGKNTRIGDANRVKKW 265
>gi|225075807|ref|ZP_03719006.1| hypothetical protein NEIFLAOT_00823 [Neisseria flavescens
NRL30031/H210]
gi|224952840|gb|EEG34049.1| hypothetical protein NEIFLAOT_00823 [Neisseria flavescens
NRL30031/H210]
Length = 310
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 97/249 (38%), Gaps = 10/249 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + TG V+ + PD AS++KLM+A VV +
Sbjct: 61 ATLAGPLLSSQSALIFNNKTGEVLYQKNPDRVMPIASISKLMSAMVVLDA----HLDMNE 116
Query: 79 PITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
PITI++ + S G+T+T L L ++ S N A+ + FV
Sbjct: 117 PITITEAEIDRLKGTGSRLSIGTTLTRGELLHLSLMSSENRATHALGRTYPGGLSAFVAA 176
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK---GLE 194
MN +++LG+S++ F G+ + +TARD+ + +
Sbjct: 177 MNAKAQSLGMSSSRFYEPTGL-NFQNVSTARDLNRMVAAASKYPLIRKNSTSNYGSVWTV 235
Query: 195 IKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ Y N+N V + KTG+ +G ++V A +Q + V+L + TR
Sbjct: 236 NGRQNYKNSNALVREGSWNIELQKTGYIREAGRSMVVKANVQNQPITIVLLNSPSSTTRV 295
Query: 254 KVSASLLSM 262
+ + S
Sbjct: 296 NDARKIESW 304
>gi|228955274|ref|ZP_04117282.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228804407|gb|EEM51018.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 279
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|264677800|ref|YP_003277706.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
gi|262208312|gb|ACY32410.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
Length = 404
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 99/248 (39%), Gaps = 8/248 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+S + ++D +T V+ ASLTKLMT ++ + +
Sbjct: 143 SVSDPLDLQSSVAYVIDQDTHEVLLSKNDQAVLPIASLTKLMTGLLISQA----RLPMDE 198
Query: 79 PITISKNASEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
ITI+++ + +S+ + G+T+T + L ++ S N A A+ + +FVQ
Sbjct: 199 MITITQDDVDTEKHSSSRLRVGTTLTRAEMMHLALMSSENRAAHALGRTYPGGLAQFVQL 258
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN+ + LG+ T ++ G+ + +++ + + +
Sbjct: 259 MNSKALQLGMKDTRYVEPTGLSSSNQSSARDLARLVAVAHADPLMREYSTSPGYEVAVGR 318
Query: 198 KK--YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ + NTN V + G KTG+ +G +V A + LI V L + + +R
Sbjct: 319 RTLQFNNTNRLVKSDNWDIGLQKTGYISEAGRCLVMQAHVAGRKLIMVFLDSAGKFSRLA 378
Query: 255 VSASLLSM 262
+ +
Sbjct: 379 DAERVRHW 386
>gi|299531620|ref|ZP_07045025.1| D-alanyl-D-alanine endopeptidase [Comamonas testosteroni S44]
gi|298720336|gb|EFI61288.1| D-alanyl-D-alanine endopeptidase [Comamonas testosteroni S44]
Length = 404
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 10/249 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+S + ++D +T V+ ASLTKLMT ++ + +
Sbjct: 143 SVSDPLDLQSSVAYVIDQDTHEVLLSKNDQAVLPIASLTKLMTGLLISQA----RLPMDE 198
Query: 79 PITISKNASEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
ITI+++ + +S+ + G+T+T + L ++ S N A A+ + +FVQ
Sbjct: 199 MITITQDDVDTEKHSSSRLRVGTTLTRAEMMHLALMSSENRAAHALGRTYPGGLAQFVQL 258
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-- 195
MN+ + LG+ T ++ G+ ++ARD+A L D +
Sbjct: 259 MNSKALQLGMKDTRYVEPTGLSSSNQ-SSARDLARLVAVAHADPLMREYSTSPGYEVAVG 317
Query: 196 -KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ ++ NTN V + G KTG+ +G +V A + LI V L + + +R
Sbjct: 318 RRTLQFNNTNRLVKSDNWDIGLQKTGYISEAGRCLVMQAHVAGRKLIMVFLDSAGKFSRL 377
Query: 254 KVSASLLSM 262
+ +
Sbjct: 378 ADAERVRHW 386
>gi|241760382|ref|ZP_04758477.1| D-alanyl-D-alanine endopeptidase [Neisseria flavescens SK114]
gi|261379793|ref|ZP_05984366.1| penicillin-binding protein 7 [Neisseria subflava NJ9703]
gi|241319260|gb|EER55738.1| D-alanyl-D-alanine endopeptidase [Neisseria flavescens SK114]
gi|284797478|gb|EFC52825.1| penicillin-binding protein 7 [Neisseria subflava NJ9703]
Length = 318
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 57/262 (21%), Positives = 105/262 (40%), Gaps = 11/262 (4%)
Query: 7 IIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
A++ + ++A + + TG V+ + PD AS++KLM+A VV
Sbjct: 56 AFALSHADQVEAQAALAGPLLSSQSALIFNNKTGEVLYQKNPDRVMPIASISKLMSAMVV 115
Query: 66 FSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+ PITI++ + S G+T+T L L ++ S N A+
Sbjct: 116 LDA----HLDMNEPITITEAEIDRLKGTGSRLSIGTTLTRGELLHLSLMSSENRATHALG 171
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
+ FV MN +++LG++++ F G+ + +TARD+ +
Sbjct: 172 RTYPGGMSAFVAAMNAKAQSLGMTSSRFYEPTGL-NFQNVSTARDLNRMVAAASKYPLIR 230
Query: 185 MHYFQIKGLEI---KGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ G + Y N+N V + KTG+ +G ++V A +Q +
Sbjct: 231 KNSTSNYGSVWTANGRQNYKNSNALVREGSWNIELQKTGYIREAGRSMVVKANVQNQPIT 290
Query: 241 AVILGALDRNTRNKVSASLLSM 262
V+L + TR + + S
Sbjct: 291 IVLLNSPSSTTRVNDARKIESW 312
>gi|332974550|gb|EGK11470.1| D-alanyl-D-alanine endopeptidase PbpG [Kingella kingae ATCC 23330]
Length = 313
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 102/244 (41%), Gaps = 11/244 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+++ NTG + + D+ + AS++KLM A VV + + IT
Sbjct: 66 AGPLLNAQSALIMNANTGQIFYQKNMDNVRSIASISKLMAAMVVLDA----RLDMNQRIT 121
Query: 82 ISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I++ + S G+T+T L L ++ S N A+ + FVQ MN
Sbjct: 122 ITEAEIDRLKGTGSRLSIGTTLTRGQMLHLGLMSSENRAIHALGRTYPGGMSAFVQAMNA 181
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW----RIKTDFPQYMHYFQIKGLEIK 196
+++LG+ + F G+ + +TAR+++++ + + K
Sbjct: 182 KARSLGMMNSRFYEPTGL-DPRNVSTARELSMMVRAASQYPQIRQLSTAQSGEAYTSTGK 240
Query: 197 GKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
++Y N+N V KTG+ +G ++V G + +I V+LG+ TR
Sbjct: 241 FEQYKNSNIFVREGNWNITVQKTGYIREAGRSMVMQTQMGREPVIIVVLGSQTTTTRAND 300
Query: 256 SASL 259
+ +L
Sbjct: 301 ARAL 304
>gi|299783572|gb|ADJ41570.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus fermentum CECT
5716]
Length = 421
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 70/348 (20%), Positives = 136/348 (39%), Gaps = 33/348 (9%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + + T +D TG V+ E + AS+ K++T V+ +++ K
Sbjct: 29 SAGAVANASSTVDARAAITIDAETGQVLYEKNATKRYPIASVIKILTLAVIEQDIEQGKL 88
Query: 75 MLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
I ISK +++ SN +G + T+ + ++ +++ SA+ A A+A + +
Sbjct: 89 KWDQKIKISKEVAKVANDWRFSNVQLNEGESYTVKSLVESMMIVSADGSAEALALASAGS 148
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWR 176
F Q M +K G++ N G+ + +A+D+A ++
Sbjct: 149 TAAFNQKMQAVAKEAGVTDAKIYNMIGLANGDLGEMRLKNVSKKAENQLSAKDVAKIARY 208
Query: 177 IKTDFPQYMHYFQIKGLEI-----KGKKYPNTNWAVGTFL------GADGMKTGFTCASG 225
+ +P + + K + + + N N + DG+KTG T +SG
Sbjct: 209 LVEKYPSVLEITKQKFVNFQVSDSQQYEMVNINSMLPQNAAASTHGEVDGLKTGMTDSSG 268
Query: 226 FNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
+ V + + LI V+L N + KV+ +++ + DF +
Sbjct: 269 YCFVGTGTFNGRRLITVVLKVPGEYNNQFKVTDAMIGQVLDKYQYLTVNK--LSDFKKGV 326
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
S V + ++ T + T + AK+ D E I L KNK
Sbjct: 327 QSVTVAHAEKKGPKTVGLTLKKATTLWLAKNTSLKKADVELI-LDKNK 373
>gi|260891367|ref|ZP_05902630.1| beta-lactamase [Leptotrichia hofstadii F0254]
gi|260858750|gb|EEX73250.1| beta-lactamase [Leptotrichia hofstadii F0254]
Length = 492
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 69/308 (22%), Positives = 118/308 (38%), Gaps = 19/308 (6%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98
G ++ E ASLTK+M V + A L I + S K
Sbjct: 151 GKILKEKMSRQKHPIASLTKVMNILVALEQVDRGNAKLDDKICFTPEFVNMGGSWLNAKA 210
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
G TL + L+ I+ SAN+ A +A + FVQ MN+ +K LG++ T + G
Sbjct: 211 GDCYTLRDLLRAEIIYSANNAAYLVAHHIGKGNIDNFVQLMNDKAKELGMNDTRYYTPAG 270
Query: 158 VVQ-----HGHYTTARDMAILSWRIKTDFPQYMHYFQ----IKGLEIKGKKYPNTNWAVG 208
+ + +TA DM +L R D + ++ E + Y N N +
Sbjct: 271 LPSSMTNKNMDISTAYDMYLLGKRAIRDERLRAWMKESELVLQNSEGEDVVYSNRNHLLD 330
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
F G G+KTGF +G+N++ S+ G+ +I+V LG + R + F
Sbjct: 331 QF-GIYGLKTGFHAQAGYNMIVSSKIGNLEIISVTLGNKSDDARTEDQEQ----EFTQLE 385
Query: 269 DR--KKINYIIKDFYQ-QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI-DFE 324
R + + + + E I + T ++ N N + + + +
Sbjct: 386 KRMIPVYKAGQEIGGKFKIKNAEQKEIKGVLSTNVYQLDNTNYKFEVKDLQVTAEKEGIS 445
Query: 325 KITLLKNK 332
K ++
Sbjct: 446 KGDVIGKL 453
>gi|152981425|ref|YP_001352421.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille]
gi|151281502|gb|ABR89912.1| D-alanyl-D-alanine-endopeptidase [Janthinobacterium sp. Marseille]
Length = 436
Score = 117 bits (293), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/241 (21%), Positives = 101/241 (41%), Gaps = 6/241 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+LD +T V+ E + AS+TKLMT VV ++ +L +
Sbjct: 181 ALASNVALVLDQSTSAVLFEKNANVTLPIASITKLMTGLVVVEAQQDMNEILEVTE---E 237
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ S+S + GS ++ N L + ++ S N A A+ + FV MN +++
Sbjct: 238 DIDREKNSSSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGIRAFVAAMNAKARS 297
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--KYPN 202
LG++ TH++++ G+ + + A ++ + +E G+ +Y N
Sbjct: 298 LGMNGTHYVDSTGLSSNNVASAADLAKLVIAASNHSILRQYSTDTKYVVEPGGRALQYAN 357
Query: 203 TNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+N V G KTG+ +G +V A + ++ + L + + +R +A +
Sbjct: 358 SNRLVNNPDWEIGIQKTGYISEAGRCLVMQANINGRPIVMIFLDSKGKLSRLGDAARIRK 417
Query: 262 M 262
Sbjct: 418 W 418
>gi|30023045|ref|NP_834676.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|29898605|gb|AAP11877.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
Length = 273
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG V+ D PAS+ K+MT
Sbjct: 9 FTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDERSYPASIAKMMTTL 68
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 69 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 124 SIAEHIAGSKNEFVKMMNTRAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 183
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 184 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 244 RVINVVL-SSTRAQLYPDTKKMAHYAFQQ 271
>gi|218234016|ref|YP_002369811.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
B4264]
gi|229049698|ref|ZP_04194255.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
gi|229153200|ref|ZP_04281379.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
gi|296505443|ref|YP_003667143.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
gi|218161973|gb|ACK61965.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus B4264]
gi|228630299|gb|EEK86949.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus m1550]
gi|228722611|gb|EEL73999.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676]
gi|296326495|gb|ADH09423.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
Length = 279
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG V+ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRAQLYPDTKKMAHYAFQQ 277
>gi|134094059|ref|YP_001099134.1| D-alanyl-D-alanine-endopeptidase [Herminiimonas arsenicoxydans]
Length = 400
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/252 (20%), Positives = 100/252 (39%), Gaps = 6/252 (2%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
A ++D +T V+ E + AS+TKLMT VV ++
Sbjct: 134 IAGLSMTRDALALASSVALVIDQSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQDMN 193
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
ML ++ S+S + GS ++ N L + ++ S N A A+ +
Sbjct: 194 EMLEVTA---EDIDREKNSSSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGLRA 250
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
FV MN +K+LG+ TH++++ G+ + + ++ + +
Sbjct: 251 FVATMNAKAKSLGMRGTHYVDSTGLSSNNVASARDLAKLVVEAYNHPILRQYSTDSKYVV 310
Query: 194 EIKGK--KYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
E G+ +Y N+N V G KTG+ +G +V ++ ++ + L + +
Sbjct: 311 EPGGRALQYANSNRLVTNPDWEIGIQKTGYISEAGRCLVMQTNIKERPIVMIFLDSKGKF 370
Query: 251 TRNKVSASLLSM 262
+R +A +
Sbjct: 371 SRLGDAARIRKW 382
>gi|258625555|ref|ZP_05720443.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM603]
gi|258582148|gb|EEW07009.1| D-alanyl-D-alanine endopeptidase [Vibrio mimicus VM603]
Length = 317
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 66/277 (23%), Positives = 112/277 (40%), Gaps = 12/277 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D T VI + PD AS+TKLMTA V K + T + I+
Sbjct: 44 QELAANSALVIDLKTNEVIYSSNPDAVRPIASVTKLMTAIVTLDA----KLPMDTKLPIT 99
Query: 84 -KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
K A E +S + GS ++ + L L ++ S N A ++A K F++ MNN +
Sbjct: 100 IKEAKEMKGIHSRVRIGSEISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNNKA 159
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY-- 200
K LG+ T F+ G+ + + + +L K + + K + +Y
Sbjct: 160 KALGMKNTRFVEPTGLSEKNVSSARDLVLLLKASKKYPMLGQLSATEKKTVTFAKPRYSL 219
Query: 201 --PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
NTN V D KTGFT A+G +V G + + V+L + + +
Sbjct: 220 DFRNTNRLVFNDNWKIDLTKTGFTNAAGHCLVMRTQMGKRQVAFVVLDTKGKLSPVGDAN 279
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
L + + K + +Q ++ IS+
Sbjct: 280 RLRTWL--ETGKVTPLPADAKQYKKQRNQEQIAKISD 314
>gi|189501153|ref|YP_001960623.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
phaeobacteroides BS1]
gi|189496594|gb|ACE05142.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
phaeobacteroides BS1]
Length = 307
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 71/283 (25%), Positives = 125/283 (44%), Gaps = 25/283 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDHP 50
MR V +++L F S A + P Y L D T ++
Sbjct: 1 MRSLRVFALLSLLILAFQPGSYAGSATQPDTLDFEQEINSYILKDIGTSEILMSKNTGKR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
PASLTK++T+ + K + I K A+ P+ + F+ G + L + +K
Sbjct: 61 IQPASLTKILTSIMAIESGKLG-----DYVVIPKEATVVEPTKAGFQAGERIRLVDLVKA 115
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---GHYTTA 167
+V+S+ND A AI+ L + + F + MN ++ +G+ ++F N G + GHY+TA
Sbjct: 116 SMVRSSNDAAFAISIYLGGSVQGFARMMNRKARKIGMRNSNFTNPAGFDRDLYAGHYSTA 175
Query: 168 RDMAILSWRIKTDFPQYM-----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
RD+ LS + + K ++N +G + A G+KTG+T
Sbjct: 176 RDLLRLSEYAIGNEIFNRIAALDSISFFEQNTRKKYTLKSSNKLLGKYQYAVGIKTGYTM 235
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+G ++A A +G++ ++ V+L A R ++ + GF
Sbjct: 236 KAGRCLIARAKKGEKDMVLVMLKA--GRKRWALAEQMFEKGFS 276
>gi|302549283|ref|ZP_07301625.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
DSM 40736]
gi|302466901|gb|EFL29994.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
DSM 40736]
Length = 412
Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats.
Identities = 56/259 (21%), Positives = 95/259 (36%), Gaps = 15/259 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ + D TG V+A PAS K + A V L
Sbjct: 86 TGAPRVPRVSALSWLVADARTGVVLAAYNAHRRLPPASTLKTLFAVTVMPELPAGA--RH 143
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
T S +G T + + + + + S ND +AE L + +
Sbjct: 144 TVREDELQGIGEGSSLVGITEGRTYRVADLWRGVFLNSGNDAVHVLAE-LGGGWRTTARR 202
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEI 195
M +++LG T ++ G G ++A D+A+ D F QY + +
Sbjct: 203 MQAKARSLGALDTRVVSPDGYDTPGQVSSAFDLAVFGRVGLRDPAFAQYCATVEARFPAG 262
Query: 196 KGKKYPNTN--------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
G YP N V + G G+K G+T +G +VA+A + ++L+ ++
Sbjct: 263 GGWSYPIRNTNRLLSGAPGVKPYRGLIGIKNGYTTHAGNTLVAAARRDGRTLVVTVMNPQ 322
Query: 248 --DRNTRNKVSASLLSMGF 264
+T + + SLL GF
Sbjct: 323 EGGGSTVYEEARSLLDWGF 341
>gi|228923740|ref|ZP_04087018.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228835869|gb|EEM81232.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 290
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 58/269 (21%), Positives = 107/269 (39%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + Y +D +TG ++ D PAS+ K+MT
Sbjct: 26 FTGMIFFSYAQRQQAVRVNQPNITGQYAITIDADTGEILYGKREDERSYPASIAKMMTTL 85
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 86 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 140
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+A+++
Sbjct: 141 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYDIAMITKEALKYP 200
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 201 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 260
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 261 RVINVVL-SSTRAQLYPDTKKMAHYAFQQ 288
>gi|229094119|ref|ZP_04225203.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
gi|228689331|gb|EEL43150.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
Length = 301
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 57/267 (21%), Positives = 107/267 (40%), Gaps = 8/267 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 37 FTGMIFFSYAQRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 96
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++ +KE + + T I +E + G + D ALKL+++ SA+ IA +I
Sbjct: 97 LLLENVKENEEITVTENAI---KTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAESI 153
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + ++ +FV+ MN +K LG F NA G G+ + D+A+++
Sbjct: 154 AEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITKEALKYPVV 213
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + ++ PN A G K+G + + +V + + +
Sbjct: 214 LEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGKRV 273
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYN 266
I V+L + R + + F
Sbjct: 274 INVVL-SSTRKQLYPDTKKMAHYAFQQ 299
>gi|193222252|emb|CAL61007.2| D-alanyl-D-alanine endopeptidase precursor (DD-endopeptidase)
(Penicillin-binding protein 5) (PBP-5) [Herminiimonas
arsenicoxydans]
Length = 308
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 51/252 (20%), Positives = 100/252 (39%), Gaps = 6/252 (2%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
A ++D +T V+ E + AS+TKLMT VV ++
Sbjct: 42 IAGLSMTRDALALASSVALVIDQSTSEVLFEKNANVTLPIASITKLMTGLVVVEAQQDMN 101
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
ML ++ S+S + GS ++ N L + ++ S N A A+ +
Sbjct: 102 EMLEVTA---EDIDREKNSSSRLRVGSQLSRANMLHIALMSSENRAASALGRHYPGGLRA 158
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
FV MN +K+LG+ TH++++ G+ + + ++ + +
Sbjct: 159 FVATMNAKAKSLGMRGTHYVDSTGLSSNNVASARDLAKLVVEAYNHPILRQYSTDSKYVV 218
Query: 194 EIKGK--KYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
E G+ +Y N+N V G KTG+ +G +V ++ ++ + L + +
Sbjct: 219 EPGGRALQYANSNRLVTNPDWEIGIQKTGYISEAGRCLVMQTNIKERPIVMIFLDSKGKF 278
Query: 251 TRNKVSASLLSM 262
+R +A +
Sbjct: 279 SRLGDAARIRKW 290
>gi|167837175|ref|ZP_02464058.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis MSMB43]
Length = 362
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/249 (22%), Positives = 106/249 (42%), Gaps = 12/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV LT
Sbjct: 101 TPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVLDSKAP----LTDQ 156
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ ++ + S GS ++ ++ L + ++ S N A A++ F+ M
Sbjct: 157 IDVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYTGGRPAFIAAM 216
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K+LG+S THF N+ G+ + ++ARD+ + +P + + E+
Sbjct: 217 NAKAKSLGMSDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVNTG 274
Query: 199 K----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 275 KRMLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHSRPIVMVLLDSFGKYSRF 334
Query: 254 KVSASLLSM 262
++ + +
Sbjct: 335 ADASRVRNW 343
>gi|77414953|ref|ZP_00791048.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
agalactiae 515]
gi|77158997|gb|EAO70213.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
agalactiae 515]
Length = 369
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 30/319 (9%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKG 99
E + P ASLTK+MT Y+V+ + T + IS + +++ +
Sbjct: 2 YEKDANRPAAIASLTKIMTVYMVYKEIDNGNLKWNTKVNISDYPYQLTRESDASNVPLEK 61
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
T+ + ++ SAN A+A+AE + TE KFV M + G+ +H +NA G+
Sbjct: 62 RRYTVKQLVDAAMISSANSAAIALAEHISGTESKFVDKMTAQLEKWGIHDSHLVNASGLN 121
Query: 160 Q--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
+ +ARD+AI+++ + ++P + + + N+
Sbjct: 122 NSMLGNHIYPKSSQNDENKMSARDIAIVAYHLVNEYPSILKITSKSVAKFDKDIMHSYNY 181
Query: 206 AVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSA 257
+ G G+KTG T +G + +A++ + L+ VI+ A D+ R +
Sbjct: 182 MLPDMPVFRPGITGLKTGTTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATN 241
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
SLL+ + + V + E+ + Q K +
Sbjct: 242 SLLNYITNTYEPNLVLAKGAT---YKGKEASVRDGKEQSVIAVAKNDLKVAQKKNITKQN 298
Query: 318 SHFIDFEKITLLKNKITKK 336
I+F+K L ITKK
Sbjct: 299 QLKINFKK--ELTAPITKK 315
>gi|297158127|gb|ADI07839.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces bingchenggensis
BCW-1]
Length = 430
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/295 (16%), Positives = 100/295 (33%), Gaps = 25/295 (8%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++ + + + D +G V+A + PAS K++ A V + +
Sbjct: 73 APALPKRLSGLSWMVADAESGDVLAAHNAHWELPPASTLKMLFADTVLPKIPK---DREH 129
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ S A S+ K + + L L + + + AV + ++ + K V+ M
Sbjct: 130 KVAPSDLAGMGAGSSLVGVKENLTYSVHDLWLGVFLRSGNDAVHVLSAMNGGKAKTVEEM 189
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
++ L TH + G + G ++A D+ + + +
Sbjct: 190 QAHAEQLNALDTHVVTPDGYDEKGQVSSAYDLTLFARSGLQKADFREYCSTATAQFPGEY 249
Query: 199 K---------------YPNTNW-----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
K NTN V + G G+K G+T +G A GD+
Sbjct: 250 KKDKKNKGKKKRESFAIQNTNRLLTGFNVPQYKGIAGVKNGYTTHAGSTFTGVAQHGDRV 309
Query: 239 LIAVILGALDRNT--RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
L+ ++ K +A+L GF + + +++ + S +
Sbjct: 310 LLVTVMNPQKEEANEVYKETATLFDWGFKAADKVEPVGSLVRPGPKGLTSGSASD 364
>gi|301629534|ref|XP_002943893.1| PREDICTED: d-alanyl-D-alanine endopeptidase-like [Xenopus
(Silurana) tropicalis]
Length = 356
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 58/249 (23%), Positives = 101/249 (40%), Gaps = 10/249 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+S + K ++D NT V+ ASLTKLMT ++ +
Sbjct: 102 QVSDPLSLKSSVALVIDQNTHEVLLSKNDKAVLPIASLTKLMTGLLISEA----HLSMDE 157
Query: 79 PITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
P+TI+++ + S S G+T+T L L ++ S N A A+ + FV
Sbjct: 158 PLTITQDDVDTEKGSRSRLSVGTTLTRGEMLHLALMSSENRAAHALGRTYPGGLGAFVAR 217
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-- 195
MN ++ LG++ T ++ G+ H ++ARD+A L D
Sbjct: 218 MNAKARQLGMTDTRYVEPTGLSSHNQ-SSARDLATLVNVAHGDPLLRELSTSPGYEVAVG 276
Query: 196 -KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ ++ NTN V + G KTG+ +G +V A + +I V L + + +R
Sbjct: 277 RRTLQFNNTNRLVSSPAWDIGLQKTGYIAEAGRCLVMQAQVAGRQIIMVFLDSAGKFSRL 336
Query: 254 KVSASLLSM 262
+ +
Sbjct: 337 GDAERVRHW 345
>gi|326802681|ref|YP_004320499.1| serine-type D-Ala-D-Ala carboxypeptidase [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650727|gb|AEA00910.1| serine-type D-Ala-D-Ala carboxypeptidase [Aerococcus urinae
ACS-120-V-Col10a]
Length = 455
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 63/309 (20%), Positives = 120/309 (38%), Gaps = 41/309 (13%)
Query: 9 AMAMLSNIFPFLSIAETNKL-------------PYYTLLDTNTGHVIAENYPDHPWNPAS 55
+A++ P L+ ET + +D +G ++ + D AS
Sbjct: 16 ILALVFFASPVLASGETVTDFSQQLSQSQQYGFKHAIAIDQESGQILYQKDADDLHGIAS 75
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-----PSNSTFKKGSTMTLDNALKL 110
LTKL++ YV++ L + K L + +S ++ + + ++D +
Sbjct: 76 LTKLLSLYVIYDQLAQGKLSLDEAVPVSPALAQQSQVEGLSNVPLVAGPANYSVDQLIDA 135
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------------ 158
+I+ SAN VA+AE + +E F+ M LG+ + ++A G+
Sbjct: 136 VIIASANSATVALAEKVAGSEDHFIDLMAQKLDQLGVDDYNLVSASGLRGELRADARPGQ 195
Query: 159 --VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNWAVGTFL 211
+ +A+ +A++ R+ D+P Q+K + N+N +
Sbjct: 196 FAESEENRVSAKSLALVVQRLLKDYPDIQSRAQVKEKVFQVAPDWQVTMTNSNQLLPGMT 255
Query: 212 G----ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNK 267
G+KTG +G+ +VA++ + +I V LGA R ++ LLS N
Sbjct: 256 YGRQDITGLKTGTELGAGYCLVATSFINQRPVILVTLGAESNEDRFLETSRLLSDLQNNL 315
Query: 268 TDRKKINYI 276
I
Sbjct: 316 DWVVLIPQG 324
>gi|229082256|ref|ZP_04214719.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
gi|228700688|gb|EEL53211.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
Length = 279
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D NTG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPNITGQYGVTIDANTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|154483287|ref|ZP_02025735.1| hypothetical protein EUBVEN_00988 [Eubacterium ventriosum ATCC
27560]
gi|149735797|gb|EDM51683.1| hypothetical protein EUBVEN_00988 [Eubacterium ventriosum ATCC
27560]
Length = 345
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 61/264 (23%), Positives = 98/264 (37%), Gaps = 27/264 (10%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ L++ N+ + E D PAS TKLMTA V +K I
Sbjct: 83 QAISAKAAILVNVNSKEIYYEKNSDAKMYPASTTKLMTALTVLQNMKTTDI---VTIGSE 139
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES----------------- 126
N S + F +G +T+ L+ L++ S ND A +A++
Sbjct: 140 INMIAADSSKAGFSQGQVVTVQELLEGLLISSGNDAAYVLAKAAGEAILKDNIANEGKTF 199
Query: 127 -LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+ ++FV MN +++ L THFM+ G YT+A D++ ++ +
Sbjct: 200 TAAQCVERFVYEMNKNVRDMELENTHFMSPDGYDAADQYTSASDLSKIAIEAYNNETIRK 259
Query: 186 HY--FQIKGLEIKGKKYPNT----NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
K + + GMKTG T +G +V+ A GD
Sbjct: 260 ICGTQSEKSGTLNKTWVSTNALLDKSGQFYYQYCVGMKTGSTGLAGKCLVSVAKNGDTEC 319
Query: 240 IAVILGALDRNTRNKVSASLLSMG 263
I+V+L R + LL G
Sbjct: 320 ISVVLNDSTDEQRWTDAKKLLKFG 343
>gi|167570535|ref|ZP_02363409.1| family S11 unassigned peptidase [Burkholderia oklahomensis C6786]
Length = 363
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 12/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV LT
Sbjct: 102 TPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVVDSKAP----LTDQ 157
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ ++ + S GS ++ ++ L + ++ S N A A++ F+ M
Sbjct: 158 IEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFIAAM 217
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K LG++ THF N+ G+ + ++ARD+ + +P + + E+
Sbjct: 218 NAKAKALGMTDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVDTG 275
Query: 199 K----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 276 KRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRF 335
Query: 254 KVSASLLSM 262
++ + +
Sbjct: 336 ADASRVRNW 344
>gi|167563365|ref|ZP_02356281.1| family S11 unassigned peptidase [Burkholderia oklahomensis EO147]
Length = 278
Score = 117 bits (292), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 12/249 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV LT
Sbjct: 17 TPDSLALRSSVAYVVDQNTSEPLFDKNSHAVVPIASITKLMTAMVVVDSKAP----LTDQ 72
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ ++ + S GS ++ ++ L + ++ S N A A++ F+ M
Sbjct: 73 IEVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFIAAM 132
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +K LG++ THF N+ G+ + ++ARD+ + +P + + E+
Sbjct: 133 NAKAKALGMTDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVDTG 190
Query: 199 K----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 191 KRTLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRF 250
Query: 254 KVSASLLSM 262
++ + +
Sbjct: 251 ADASRVRNW 259
>gi|291544780|emb|CBL17889.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13]
Length = 337
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 19/252 (7%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + + V+AE PAS+TKLMT + + TP K
Sbjct: 77 EIDSRFAYVWNVTEDRVLAEKNGQERMYPASMTKLMTLLLACESG----IAMDTPYVFDK 132
Query: 85 NA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ S F+ T+T + L I+ S D A+AE + E F +HMN
Sbjct: 133 DMLDPLIAQGASRVGFEPEETVTFADLLYGSILSSGGDATAALAEVVDGDEASFAKHMNR 192
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+++LG+ THF+NA G+ HY+TARD+A+L + + + +
Sbjct: 193 RAQDLGMFDTHFVNASGLHDDEHYSTARDIALLLEKTLENATCREILSTSVYTTSRNSVH 252
Query: 201 PNTN---------WAVGTFLGA--DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
PN G KTGFT +G+ + + A QG + I V+ G ++
Sbjct: 253 PNGMEIRSVVELRMQDYQPEQVKFQGGKTGFTDQAGYCLASFAEQGSDTYIVVVAGGEEK 312
Query: 250 NTRNKVSASLLS 261
N + + L
Sbjct: 313 NAPTQDTQKLYD 324
>gi|229193289|ref|ZP_04320240.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
gi|228590266|gb|EEK48134.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 10876]
Length = 279
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQSVRANQPNITGQYGVTIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRAQLYPDTKKMAHYAFQQ 277
>gi|206970320|ref|ZP_03231273.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH1134]
gi|206734897|gb|EDZ52066.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
AH1134]
Length = 279
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D NTG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPNITGQYGVTIDANTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|261822173|ref|YP_003260279.1| D-alanyl-D-alanine endopeptidase [Pectobacterium wasabiae WPP163]
gi|261606186|gb|ACX88672.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pectobacterium
wasabiae WPP163]
Length = 315
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/252 (21%), Positives = 93/252 (36%), Gaps = 10/252 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ S + ++D H++ + PD AS+TKLMTA VV L
Sbjct: 32 YSAGSAHQEIASGSAMVVDLRDNHILYSSNPDVVVPIASVTKLMTALVVLDA----NLPL 87
Query: 77 TTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
I++ E S + S ++ + L L ++ S N A ++A + F+
Sbjct: 88 DEIISVDISQTKEMKGVYSRVRLNSEISRHDMLLLALMSSENRAAASLAHHYPGGYQAFI 147
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI 195
+ MN + LG++ T ++ G+ + T +L + + Q K
Sbjct: 148 RAMNAKANALGMTHTRYVEPTGLSINNVSTARDLTKLLIASKQYPLLSQLSTTQEKTATF 207
Query: 196 KGKKY----PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
Y NTN V KTGFT +G +V + + + V+L A +
Sbjct: 208 THPAYSLPFRNTNHLVYKADWSIQLTKTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKY 267
Query: 251 TRNKVSASLLSM 262
T + L
Sbjct: 268 THFADANRLRKW 279
>gi|228961252|ref|ZP_04122872.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228798458|gb|EEM45451.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 279
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG V+ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNTRAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRKQLYPDTKKMAHYAFQQ 277
>gi|145535902|ref|XP_001453684.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421406|emb|CAK86287.1| unnamed protein product [Paramecium tetraurelia]
Length = 395
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 62/257 (24%), Positives = 111/257 (43%), Gaps = 12/257 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P + + +++ G ++A AS+TK+MT ++ F+
Sbjct: 138 LSPSIPFGPPITAQSWCIINGKDGSLLAGFNEKFKCQIASITKIMTCFLSLKFVSLISLD 197
Query: 76 LT-TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-K 133
L T T+ + A +++ + G + L + L L++ S ND AV + + +T
Sbjct: 198 LDNTYFTVPEAAENVGGTSAQLQTGDQLNLRDLLYGLMLPSGNDAAVTLKHNFEQTTGIN 257
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP--------QYM 185
F+ MN+ +K GL +T +MN HG+ +Y++A D+ IL ++ + Y
Sbjct: 258 FIDEMNSCAKEFGLKSTQYMNPHGLYHKFNYSSALDIGILCFQALQNEHFANIVKTKIYF 317
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
K IK + NTN + G G+KTG T +G +V + + S I V+L
Sbjct: 318 SEIIDKFGNIKEILWENTNKLL--DNGFQGVKTGQTKEAGPCVVEYYLDNNNSYIIVLLN 375
Query: 246 ALDRNTRNKVSASLLSM 262
+ R + LL
Sbjct: 376 CKSTDYRWYDAIQLLDW 392
>gi|20977191|gb|AAM33319.1|AF503595_3 hypothetical protein [Erwinia chrysanthemi]
Length = 316
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/284 (19%), Positives = 97/284 (34%), Gaps = 11/284 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D V+ PD AS+TKLMTA VV + ++ I+ +
Sbjct: 39 QEIASGSAMVVDLRNNEVLYSANPDVVVPIASVTKLMTAMVVLDANQPLDERISVDISQT 98
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
K S + GS ++ + L L ++ S N A ++A + F+ MN ++
Sbjct: 99 KE---MKGVYSRVRLGSEISRHDMLLLALMSSENRAAASLAHHYRGGYQAFIAAMNAKAR 155
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--- 200
G + T ++ G+ T +L + + Q K Y
Sbjct: 156 A-GHTHTRYVEPTGLSTSNVSTARDLTKLLIASRQYPLLSQLSTTQEKNAVFTQPSYSLP 214
Query: 201 -PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
NTN + KTGFT +G +V + + + V+L A + T +
Sbjct: 215 FRNTNHLIYRQDWNIQLTKTGFTNQAGHCLVMRTVINGRPVSLVVLDAFGKFTHFADANR 274
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
L + + + +Q +V E
Sbjct: 275 LRNWL--ETGKVSPVPEAALSYKKQKSVASRQPHGADVTAAVDE 316
>gi|5053120|gb|AAD38860.1|AF156692_1 penicillin-binding protein 4 [Neisseria gonorrhoeae]
Length = 312
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 107/264 (40%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I+P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 48 IEIFAESTIYPADTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 107
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + + S G+ +T L L ++ S N A
Sbjct: 108 VVLDA----NLDMNETVTITPDEIDRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 163
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ + F G+ + +TA+D++++
Sbjct: 164 LGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 222
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 223 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 282
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 283 VTIVLLNSPTSATRVNDARKIESW 306
>gi|729291|sp|P39042|DACX_STRSK RecName: Full=D-alanyl-D-alanine carboxypeptidase;
Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
Full=Penicillin-binding protein; Short=PBP; Flags:
Precursor
gi|581684|emb|CAA42591.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. K15]
Length = 291
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 61/279 (21%), Positives = 108/279 (38%), Gaps = 24/279 (8%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++A L T ++ TG + D + S TK+MTA VV
Sbjct: 16 LLAAGTLGATPATAVTKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVL 75
Query: 67 SFLKEKKAMLTTPITI----SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ L +TI S PS + G +T+ L L++ S D A A
Sbjct: 76 AQS---NLNLDAKVTIQKAYSDYVVANKPSQAHLIVGDKVTVRQLLYGLMLPSGCDAAYA 132
Query: 123 IAESLCKTEKKFVQ------HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
+A+ + + MN + NLGL THF + G+ +Y+T R + ++
Sbjct: 133 LADKYGSGSQAAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRHLTKIAS- 191
Query: 177 IKTDFPQYMHYFQIKGLEIK----------GKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
+ + K K + NTN + ++ GA G+KTG + +
Sbjct: 192 SAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKY 251
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+V +A +G +++I +L + R + +++ GF
Sbjct: 252 CLVFAATRGGKTVIGTVLASTSIPARESDATKIMNYGFA 290
>gi|291536181|emb|CBL09293.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis M50/1]
gi|291538955|emb|CBL12066.1| D-alanyl-D-alanine carboxypeptidase [Roseburia intestinalis XB6B4]
Length = 327
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 63/256 (24%), Positives = 113/256 (44%), Gaps = 22/256 (8%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ T ++ PAS TK++TAY+ + L+ +TIS+NA+
Sbjct: 77 AEGAGTFNLATNEIVYAKNIYERLYPASTTKILTAYIALKYCT----DLSQTVTISENAA 132
Query: 88 EY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S G + +D+ L ++++S ND A++IAES+ + ++F MN + L
Sbjct: 133 NQASDSSVCGLHAGDVIRMDDLLYGMMLRSGNDAAISIAESISGSVEEFAALMNKEAAAL 192
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL--------EIKG 197
G + +HF+N +G+ HYT+ D+ ++ + I+
Sbjct: 193 GATQSHFVNPNGLPDENHYTSVYDLYLIFRAALQNETFVQIISTTSYDVTYQAGDGTIEE 252
Query: 198 KKYPNTNW----AVGTFLG--ADGMKTGFTCASGFNIV-ASAIQGDQSLIAVILGALDRN 250
+ NTN + G G KTG T A+G+ +V S + Q +I+++L A ++
Sbjct: 253 HTWENTNQYLSGHAKSPDGFTVIGGKTGTTGAAGYCLVLYSMNEQSQPIISIVLKADGKS 312
Query: 251 TRNKVSASLLSMGFYN 266
+ +LS GF N
Sbjct: 313 NLYLLMNEMLS-GFAN 327
>gi|38233244|ref|NP_939011.1| putative peptidoglycan synthesis related protein [Corynebacterium
diphtheriae NCTC 13129]
gi|38199503|emb|CAE49154.1| Putative peptidoglycan synthesis related protein [Corynebacterium
diphtheriae]
Length = 410
Score = 117 bits (291), Expect = 3e-24, Method: Composition-based stats.
Identities = 59/278 (21%), Positives = 110/278 (39%), Gaps = 12/278 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
TN + + D +TG VIA P + PAS+ K + A V L+ +TI+
Sbjct: 93 PTNTASAWMVFDLDTGAVIATKDPHGRYRPASVIKALIALVAIDE-----LDLSKKVTIT 147
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ S F +G ++ L L++ S ND A A+A +L E ++ +N+ ++
Sbjct: 148 NDDVNQEGSAVGFVEGIDYSVQQLLDGLLLGSGNDAASALARAL-GGEDTTIKKINDLAQ 206
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-----GLEIKGK 198
LG T+ + G+ G T+ RD+A++ + +
Sbjct: 207 ELGTVDTYAASYTGLDAQGMSTSVRDLAVIYQAAWQNPVFADTVKKEYSELPADKTGTTF 266
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVSA 257
+ N N + G KTGFT + V + + + AVIL R + +
Sbjct: 267 QVWNDNGILMNTEHGIGGKTGFTDDAHHTFVGAKNINGRRIAAVILDTTIDLGRPWEQAN 326
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
L+ G+ ++ + + K+ + ++ +S
Sbjct: 327 KLIDAGYKVAENQAVGSILRKESSIPSEESQPKELSRP 364
>gi|145219555|ref|YP_001130264.1| Serine-type D-Ala-D-Ala carboxypeptidase [Prosthecochloris
vibrioformis DSM 265]
gi|145205719|gb|ABP36762.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
phaeovibrioides DSM 265]
Length = 311
Score = 117 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 64/273 (23%), Positives = 108/273 (39%), Gaps = 16/273 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M VI+ ++ + Y + D V D PASLTK++
Sbjct: 15 MTAVSVILLFSLFFRAGTADAAVPVLI-DSYIIKDLGYSRVFMSKDSDRLIRPASLTKIL 73
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T + K L + I + A+ PS + F+ G + L + +K +V S+ND A
Sbjct: 74 TCVLAIESGK-----LDQIVVIPREATLVEPSKAGFRTGDRIRLIDLVKASMVSSSNDAA 128
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHYTTARDMAILSWRI 177
AIA L + K F MN ++ +G+ + F N G G+ +TA D+ +L+
Sbjct: 129 FAIAMHLSGSVKGFAAAMNYRARAIGMKHSSFTNPAGFDTGEYSGNLSTAEDLLVLTEYA 188
Query: 178 K-----TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
D + K N + + A G+KTGFT +G ++A A
Sbjct: 189 IRLPHFNDMAMLGSVIVPEYRTGKMFLLRTHNKLLARYPYAVGIKTGFTRRAGKCLIARA 248
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+ + ++ V+L A R ++ + F
Sbjct: 249 QKNGRDMLLVMLNARG--DRWGIAEEMFEKAFS 279
>gi|296840908|ref|ZP_06863761.2| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
polysaccharea ATCC 43768]
gi|296839544|gb|EFH23482.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
polysaccharea ATCC 43768]
Length = 335
Score = 117 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 107/264 (40%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 71 IEIFAESTIHPTNTQAITSGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 130
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + + S G+ +T L L ++ S N A
Sbjct: 131 VVLDA----NLDMNETVTITPDEIDRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 186
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ ++ F G+ + +TA+D++++
Sbjct: 187 LGRTYPGGMGAFVAAMNRKAQSLGMYSSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 245
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 246 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 305
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 306 VTIVLLNSPTSATRVNDARKIESW 329
>gi|262402919|ref|ZP_06079479.1| murein-DD-endopeptidase [Vibrio sp. RC586]
gi|262350418|gb|EEY99551.1| murein-DD-endopeptidase [Vibrio sp. RC586]
Length = 315
Score = 117 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 69/318 (21%), Positives = 118/318 (37%), Gaps = 30/318 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFL------------------SIAETNKLPYYTLLDTNTGHVI 42
M+ F + ++ ++ + ++D T VI
Sbjct: 1 MKLFSFLGSVFLICIGSSIAMPTYSADSVTTKAVAKKTVKKQELAANSALVIDLKTNEVI 60
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGST 101
+ PD AS+TKLMTA V K + T + I+ K A E +S K GS
Sbjct: 61 YSSNPDAVKPIASVTKLMTAIVTLDA----KLPMDTKLPITIKEAKEMKGVHSRVKIGSE 116
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
++ + L L ++ S N A ++A K F++ MN +K LG+ T F+ G+
Sbjct: 117 ISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNTKAKALGMKNTRFVEPTGLSPK 176
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGM 216
+ + +L K + + K + +Y NTN V D
Sbjct: 177 NVSSARDLVVLLKASKKYPLLGQLSSTEKKTVTFAKPRYTLDFRNTNRLVFNDNWKIDLT 236
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
KTGFT A+G +V G + + V+L + + + L + I
Sbjct: 237 KTGFTNAAGHCLVMRTQMGKRQVAFVVLDTKGKLSPVGDANRLRTWV--ETGKVTPIPAD 294
Query: 277 IKDFYQQNLSNEVPNISE 294
K + +Q ++ IS+
Sbjct: 295 AKQYKKQRSREQIAKISD 312
>gi|229522399|ref|ZP_04411815.1| murein-DD-endopeptidase [Vibrio cholerae TM 11079-80]
gi|229340384|gb|EEO05390.1| murein-DD-endopeptidase [Vibrio cholerae TM 11079-80]
Length = 316
Score = 117 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 71/318 (22%), Positives = 121/318 (38%), Gaps = 29/318 (9%)
Query: 1 MRQF-----LVIIAMAMLSNIFPFLSIA--------------ETNKLPYYTLLDTNTGHV 41
M+ F +++I +++ I + + + ++D T +
Sbjct: 1 MKIFSRLGHVLLICSSLIIAIPAHSADSSTTTKAGVKKTVKKQELSANSALVIDLKTNEI 60
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
I N PD AS+TKLMTA V A L I K+A E +S K GS
Sbjct: 61 IYSNNPDAVKPIASVTKLMTAIVTLDAKLPMDAKLPITI---KDAKEMKGVHSRVKIGSE 117
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
++ + L L ++ S N A ++A K F++ MN +K LG+ T F+ G+
Sbjct: 118 ISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRFVEPTGLSAK 177
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGM 216
T + +L K + K + +Y NTN V D
Sbjct: 178 NVSTARDLVVLLKASKKYPLLGKLSATDKKTVTFSKPRYTLDFRNTNRLVHNDNWKIDLT 237
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
KTGFT A+G +V G + + V+L + + + L + ++
Sbjct: 238 KTGFTNAAGHCLVMRTQMGRRQVAFVVLDTKGKLSPVGDANRLRTW--IETGKVTPLSSE 295
Query: 277 IKDFYQQNLSNEVPNISE 294
K + +Q ++ IS+
Sbjct: 296 PKQYKKQRSQEQIAKISD 313
>gi|317405883|gb|EFV86165.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Achromobacter
xylosoxidans C54]
Length = 260
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 51/246 (20%), Positives = 92/246 (37%), Gaps = 6/246 (2%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ A + + D T VI + AS++KLMTA VV + ML
Sbjct: 1 MSVRAEAAALRSSTAYVQDLATSTVIFAKNENVVRPIASISKLMTAVVVVDANQPMDEML 60
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
++ + S + G+ ++ + L L ++ S N A A+ FV
Sbjct: 61 EITD---EDIDGLKHTTSRLRVGTKLSRGDMLHLALMSSENRAANALGRHYPGGLPAFVA 117
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN +++LG+++THF+ G+ + +L + +EI
Sbjct: 118 AMNAKAQSLGMTSTHFIEPTGLSSDNVSSPHDLARLLRAASQRPLIHRYSTDTEYDVEIN 177
Query: 197 GKKY--PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ NTN V KTG+ +G +V A + L V+L + + +R
Sbjct: 178 NRTQTFRNTNLLVRKPDWDIKVSKTGYINEAGECLVMLARINGRDLAIVLLDSQGKLSRI 237
Query: 254 KVSASL 259
+ +
Sbjct: 238 GDAVRI 243
>gi|240146306|ref|ZP_04744907.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
L1-82]
gi|257201547|gb|EEU99831.1| serine-type D-Ala-D-Ala carboxypeptidase [Roseburia intestinalis
L1-82]
Length = 327
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 22/256 (8%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ T ++ PAS TK++TAY+ + L+ +TIS+NA+
Sbjct: 77 AEGAGTFNLATNEIVYAKNIYERLYPASTTKILTAYIALKYCT----DLSQTVTISENAA 132
Query: 88 EY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S G + +D+ L ++++S ND A+AIAES+ + ++F MN + L
Sbjct: 133 NQASDSSVCGLHAGDVIRMDDLLYGMMLRSGNDAAIAIAESISGSVEEFAALMNKEAAAL 192
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL--------EIKG 197
G + +HF+N +G+ HYT+ D+ ++ + I+
Sbjct: 193 GATQSHFVNPNGLPDENHYTSVYDLYLIFRAALQNETFVQIISTTSYDVTYQAGDGTIEE 252
Query: 198 KKYPNTNW----AVGTFLG--ADGMKTGFTCASGFNIV-ASAIQGDQSLIAVILGALDRN 250
+ NTN + G G KTG T +G+ +V S + Q +I+++L A ++
Sbjct: 253 HTWENTNQYLSGHAKSPDGFTVIGGKTGTTGDAGYCLVLYSMNEQSQPIISIVLKADGKS 312
Query: 251 TRNKVSASLLSMGFYN 266
+ +LS GF N
Sbjct: 313 NLYLLMNEMLS-GFAN 327
>gi|327485860|gb|AEA80266.1| Murein-DD-endopeptidase [Vibrio cholerae LMA3894-4]
Length = 316
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 71/318 (22%), Positives = 121/318 (38%), Gaps = 29/318 (9%)
Query: 1 MRQF-----LVIIAMAMLSNIFPFLSIA--------------ETNKLPYYTLLDTNTGHV 41
M+ F +++I +++ I + + + ++D T +
Sbjct: 1 MKIFSRLGHVLLICSSLIIAIPAHSADSSPTTKAGVKKTVKKQELSANSALVIDLKTNEI 60
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
I N PD AS+TKLMTA V A L I K+A E +S K GS
Sbjct: 61 IYSNNPDAVKPIASVTKLMTAIVTLDAKLPMDAKLPITI---KDAKEMKGVHSRVKIGSE 117
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
++ + L L ++ S N A ++A K F++ MN +K LG+ T F+ G+
Sbjct: 118 ISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRFVEPTGLSAK 177
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGM 216
T + +L K + K + +Y NTN V D
Sbjct: 178 NVSTARDLVVLLKASKKYPLLGKLSATDKKTVTFSKPRYTLDFRNTNRLVHNDNWKIDLT 237
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
KTGFT A+G +V G + + V+L + + + L + ++
Sbjct: 238 KTGFTNAAGHCLVMRTQMGRRQVAFVVLDTKGKLSPVGDANRLRTW--IETGKVTPLSSE 295
Query: 277 IKDFYQQNLSNEVPNISE 294
K + +Q ++ IS+
Sbjct: 296 AKQYKKQRSQEQIAKISD 313
>gi|256556949|gb|ACU83571.1| D-alanyl-D-alanine carboxypeptidase [uncultured bacterium
HF130_AEPn_2]
Length = 307
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 59/276 (21%), Positives = 101/276 (36%), Gaps = 18/276 (6%)
Query: 1 MRQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
+R LV + A + + P + L+D T VI + PD
Sbjct: 3 IRLSLVSLFFAFAGTVANASETTLAPRDTSQLHIASGSAMLVDLQTNKVIYASNPDVVVP 62
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS+TKLMT VV + + I+I+ + E S K S M L +
Sbjct: 63 IASVTKLMTGMVVLDAKQ----NMDEYISINISDTPEMKGVFSRVKLNSEMPRKEMLLIT 118
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ S N A ++A F+ MN +K LG+++T ++ G+ H T
Sbjct: 119 LMSSENRAAASLAHHYPGGYAAFIAAMNAKAKALGMNSTRYVEPTGLSIHNVSTARDLSK 178
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFTCASGF 226
++ K + + K + + Y + KTGFT +G
Sbjct: 179 LVQAARKYPMLTQLSTTKEKTVSFRKPNYTLGFSNTDHLVNRANWDIKLTKTGFTNQAGH 238
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+V G++ + VIL A + T ++ +
Sbjct: 239 CLVLVTSMGNRPVSLVILDAFGKFTHFADASRIRKW 274
>gi|261392880|emb|CAX50461.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase;
DD-peptidase; DD-carboxypeptidase) [Neisseria
meningitidis 8013]
gi|325203838|gb|ADY99291.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis M01-240355]
Length = 312
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 107/264 (40%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 48 IEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 107
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + + S G+ +T L L ++ S N A
Sbjct: 108 VVLDA----NLDMNETVTITPDEIDRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 163
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ ++ F G+ + +TA+D++++
Sbjct: 164 LGRTYPGGMGAFVAAMNRKAQSLGMYSSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 222
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 223 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 282
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 283 VTIVLLNSPTSATRVNDARKIESW 306
>gi|59800773|ref|YP_207485.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae FA
1090]
gi|194098057|ref|YP_002001105.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
NCCP11945]
gi|239998517|ref|ZP_04718441.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
35/02]
gi|240013642|ref|ZP_04720555.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
DGI18]
gi|240016081|ref|ZP_04722621.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
FA6140]
gi|240080223|ref|ZP_04724766.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
FA19]
gi|240112436|ref|ZP_04726926.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
MS11]
gi|240115176|ref|ZP_04729238.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
PID18]
gi|240117460|ref|ZP_04731522.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
PID1]
gi|240120712|ref|ZP_04733674.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
PID24-1]
gi|240123016|ref|ZP_04735972.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
PID332]
gi|240125268|ref|ZP_04738154.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
SK-92-679]
gi|254493238|ref|ZP_05106409.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae 1291]
gi|260441006|ref|ZP_05794822.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
DGI2]
gi|268594377|ref|ZP_06128544.1| penicillin-binding protein 4 [Neisseria gonorrhoeae 35/02]
gi|268596373|ref|ZP_06130540.1| penicillin-binding protein 4 [Neisseria gonorrhoeae FA19]
gi|268598501|ref|ZP_06132668.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae MS11]
gi|268600854|ref|ZP_06135021.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID18]
gi|268603159|ref|ZP_06137326.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID1]
gi|268681640|ref|ZP_06148502.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID332]
gi|268683868|ref|ZP_06150730.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-92-679]
gi|291044337|ref|ZP_06570046.1| penicillin-binding protein 4 [Neisseria gonorrhoeae DGI2]
gi|293399525|ref|ZP_06643678.1| D-alanyl-D-alanine endopeptidase (penicillin binding protein 7)
[Neisseria gonorrhoeae F62]
gi|59717668|gb|AAW89073.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae FA
1090]
gi|193933347|gb|ACF29171.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
NCCP11945]
gi|226512278|gb|EEH61623.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae 1291]
gi|268547766|gb|EEZ43184.1| penicillin-binding protein 4 [Neisseria gonorrhoeae 35/02]
gi|268550161|gb|EEZ45180.1| penicillin-binding protein 4 [Neisseria gonorrhoeae FA19]
gi|268582632|gb|EEZ47308.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae MS11]
gi|268584985|gb|EEZ49661.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID18]
gi|268587290|gb|EEZ51966.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID1]
gi|268621924|gb|EEZ54324.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae PID332]
gi|268624152|gb|EEZ56552.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-92-679]
gi|291011231|gb|EFE03227.1| penicillin-binding protein 4 [Neisseria gonorrhoeae DGI2]
gi|291610094|gb|EFF39216.1| D-alanyl-D-alanine endopeptidase (penicillin binding protein 7)
[Neisseria gonorrhoeae F62]
gi|317163793|gb|ADV07334.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 312
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 54/268 (20%), Positives = 107/268 (39%), Gaps = 14/268 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I+P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 48 IEIFAESTIYPADTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 107
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + + S G+ +T L L ++ S N A
Sbjct: 108 VVLDA----NLDMNETVTITPDEIDRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 163
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ + F G+ + +TA+D++++
Sbjct: 164 LGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 222
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 223 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 282
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYN 266
+ V+L + TR + + S
Sbjct: 283 VTIVLLNSPTSATRVNDARKIESWMLQQ 310
>gi|295105683|emb|CBL03227.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
SL3/3]
Length = 290
Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats.
Identities = 61/237 (25%), Positives = 96/237 (40%), Gaps = 12/237 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ LLD +G V+A+ D PASLTK+MT + + +T P I
Sbjct: 32 DTASRHAILLDAQSGRVLAQKRADERTAPASLTKMMTVLLAIETEPDLDKQVTLPEDIFP 91
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
S + F T+T+ + L ++ S + A+A+ + +E+ F MN +
Sbjct: 92 ALQTEKASMAGFVPDETVTVRDLLYGAMLPSGAECCEALAQLVSGSEENFAALMNQKAAE 151
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
LG+ THF NA G+ HY++A DMA L + + ++P
Sbjct: 152 LGMKNTHFTNATGLTDTEHYSSAADMAKLLQAALHNTTFRTIFTTEHYTTTATAQHPEGV 211
Query: 205 WAVGTFLG------------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
T LG +G KTG+T A+G + + A + I V L A
Sbjct: 212 SLTSTLLGKLDGTELPTGTRIEGGKTGYTAAAGLCLASLATVNGKEYILVTLAAPGD 268
>gi|170721278|ref|YP_001748966.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida W619]
gi|169759281|gb|ACA72597.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas
putida W619]
Length = 296
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 50/270 (18%), Positives = 94/270 (34%), Gaps = 18/270 (6%)
Query: 8 IAMAMLSNIFPFLSIAET----------NKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+ + + L+D NT + ++ D AS+T
Sbjct: 1 MLTGTATLPSTAAAQPPAQIQRDPSKLHLASGSALLIDLNTNKELYSSHADRVVPIASVT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KLMTA VV MLT I + + S + GS + L + ++ S N
Sbjct: 61 KLMTAMVVLDAKLPMDEMLTMTIANNPD---MKGVYSRVRLGSQLNRRETLLITLMSSEN 117
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A ++A F++ MN +++LG++ T ++ G+ + +L
Sbjct: 118 RAATSLANHYPGGYPAFIKAMNAKARSLGMAHTRYVEPTGLSTQNVSSARDLAKLLMASR 177
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
K + + K + + Y + + KTGFT +G +V
Sbjct: 178 KYPMLSELSTTREKTVAFRKPNYTLGFRNTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLT 237
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSM 262
++ + VIL A + T ++ +
Sbjct: 238 RMDNRPVAMVILDAFGKYTHFADASRMRQW 267
>gi|50121716|ref|YP_050883.1| D-alanyl-D-alanine endopeptidase [Pectobacterium atrosepticum
SCRI1043]
gi|49612242|emb|CAG75692.1| penicillin-binding protein [Pectobacterium atrosepticum SCRI1043]
Length = 315
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 56/281 (19%), Positives = 100/281 (35%), Gaps = 24/281 (8%)
Query: 2 RQFLVIIAMAMLSNIFP-----FLSIAE---------TNKLPYYTLLDTNTGHVIAENYP 47
+ F + + ++ + ++ A ++D HV+ + P
Sbjct: 3 KNFKLSLFGLLILSTHAVMLPQAVAKAPTYSAGNAHQEIASGSAMVVDLRDNHVLYSSNP 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDN 106
D AS+TKLMTA VV L I++ E S + S ++ +
Sbjct: 63 DVVVPIASVTKLMTALVVLDA----NLPLDEIISVDISQTKEMKGVYSRVRLNSEISRRD 118
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
L L ++ S N A ++A + F+ MN ++ LG++ T ++ G+ + T
Sbjct: 119 MLLLALMSSENRAAASLAHHYPGGYQAFIHAMNAKARALGMAHTRYVEPTGLSINNVSTA 178
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFT 221
+L + + Q K Y NTN V KTGFT
Sbjct: 179 RDLTKLLIASKQYPLLSQLSTTQEKTATFTHPAYSLPFRNTNHLVYKADWSIQLTKTGFT 238
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + + + V+L A + T + L
Sbjct: 239 NQAGHCLVMRTVINQRPVALVVLDAFGKYTHFADANRLRKW 279
>gi|296394426|ref|YP_003659310.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus
rotundus DSM 44985]
gi|296181573|gb|ADG98479.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus
rotundus DSM 44985]
Length = 289
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 54/235 (22%), Positives = 97/235 (41%), Gaps = 6/235 (2%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ + D +TG V+A + PAS K + A VV L + + T ++
Sbjct: 48 WLVADLDTGEVLASRDAHGRYRPASTIKTLLAIVVLDELDTAQKVTETDA---DEVADRE 104
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G ++ L+ ++ S+N A A+A SL + MN + LG T
Sbjct: 105 SVVKFIRPGEVRSVYELLEATLMISSNGAANALARSLGGVGAAVAK-MNAEAARLGALDT 163
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
H G+ G T+ D+A+L P + + + G + N + +G++
Sbjct: 164 HAATPSGLEAPGASTSPNDLALLFQAAL-RRPDFAAIVGQESAALPGAQLVNRDPLLGSY 222
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
G G KTGFT + +N V +A + + L+ ++ + + +LL GF
Sbjct: 223 PGMLGGKTGFTDEAQYNFVGAAARSGRRLVVAVMHNPGSYP-ARQAGALLDWGFE 276
>gi|229112452|ref|ZP_04241990.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
gi|229130265|ref|ZP_04259224.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
gi|229147556|ref|ZP_04275903.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
gi|228635982|gb|EEK92465.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24]
gi|228653198|gb|EEL09077.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4]
gi|228671100|gb|EEL26406.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15]
Length = 279
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG V+ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQAVRADQPNITGQYGVTIDADTGEVLYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNTRAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 190 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRAQLYPDTKKMAHYAFQQ 277
>gi|227326961|ref|ZP_03830985.1| D-alanyl-D-alanine endopeptidase [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 315
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 52/252 (20%), Positives = 100/252 (39%), Gaps = 10/252 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ + + ++D H++ + PD AS+TKLMTA VV + ++
Sbjct: 32 YSAGTAHQEIASGSAMVVDLRDNHILYSSNPDVVVPIASVTKLMTALVVLDANQPLDEII 91
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ I+ +K S + S ++ + L L ++ S N A ++A + F++
Sbjct: 92 SVDISQTKE---MKGVYSRVRLNSEISRRDMLLLALMSSENRAAASLAHHYPGGYQAFIR 148
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIK 191
MN ++ LG++ T ++ G+ + +TARD+ L + +
Sbjct: 149 AMNAKARALGMAHTRYVEPTGL-SINNVSTARDLTKLLIASKQYPLLGQLSTTQEKTATF 207
Query: 192 GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + NTN V KTGFT +G +V + + + V+L A +
Sbjct: 208 SHPAYSQPFRNTNHLVYKADWSIQLTKTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKY 267
Query: 251 TRNKVSASLLSM 262
T + L
Sbjct: 268 THFADANRLRKW 279
>gi|253687929|ref|YP_003017119.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|251754507|gb|ACT12583.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 315
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 52/252 (20%), Positives = 100/252 (39%), Gaps = 10/252 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ + + ++D H++ + PD AS+TKLMTA VV + ++
Sbjct: 32 YSAGTAHQEIASGSAMVVDLRDNHILYSSNPDVVVPIASVTKLMTALVVLDANQPLDEII 91
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ I+ +K S + S ++ + L L ++ S N A ++A + F++
Sbjct: 92 SVDISQTKE---MKGVYSRVRLNSEISRRDMLLLALMSSENRAAASLAHHYPGGYQAFIR 148
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIK 191
MN ++ LG++ T ++ G+ + +TARD+ L + + +
Sbjct: 149 AMNAKARALGMAHTRYVEPTGL-SINNVSTARDLTKLLIASKQYPLLSQLSTTQEKTATF 207
Query: 192 GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ NTN V KTGFT +G +V + + + V+L A +
Sbjct: 208 SHPAYSLPFRNTNHLVYKADWSIQLTKTGFTNQAGHCLVMRTVINQRPVALVVLDAFGKY 267
Query: 251 TRNKVSASLLSM 262
T + L
Sbjct: 268 THFADANRLRKW 279
>gi|167756632|ref|ZP_02428759.1| hypothetical protein CLORAM_02169 [Clostridium ramosum DSM 1402]
gi|167702807|gb|EDS17386.1| hypothetical protein CLORAM_02169 [Clostridium ramosum DSM 1402]
Length = 342
Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats.
Identities = 67/319 (21%), Positives = 128/319 (40%), Gaps = 16/319 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ + + ++++ + A + Y +++ + VI + D+ + AS++K+MT
Sbjct: 6 KKMKLGLIISLMMTLVNTNVSAVPFQGKSYIVMEASHQIVIEGSNQDYIQSVASISKIMT 65
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ ++ L T IT+ ++ S G ++L + L L+++S ND AV
Sbjct: 66 CIIAIENME-----LDTIITVDDTINKAWGSGVYIHIGDKISLRDLLYGLMLRSGNDAAV 120
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKT 179
IA+++ K KFV MN+ +K L L +T F N G+ +G+ +T DMA L
Sbjct: 121 MIAKAVGKEIPKFVDMMNDKAKELQLHSTTFSNPTGLDEEDNGNQSTVYDMARLMAYCHQ 180
Query: 180 DFPQYMHY-FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + E + N N + + G KTGFT + ++ A + D
Sbjct: 181 NPIFNEIVSTKEYKREDGNGTWHNKNKLLTNYEYCIGGKTGFTKKARRTLITMARKDDLD 240
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
LI V + + + N K + I +F QQ + +V
Sbjct: 241 LIIVTFNCGND---FEFHQKKFEECYANLKATKIFSKGIVEFKQQQYY-----LDFDVYV 292
Query: 299 TQKEIINYNTQMKEAKDKE 317
+K + +
Sbjct: 293 NKKPTDKVEVSLNNNEIVI 311
>gi|15601625|ref|NP_233256.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O1 biovar eltor
str. N16961]
gi|121586429|ref|ZP_01676217.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 2740-80]
gi|121726497|ref|ZP_01679761.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V52]
gi|147672119|ref|YP_001215209.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O395]
gi|153216793|ref|ZP_01950617.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 1587]
gi|153800546|ref|ZP_01955132.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MZO-3]
gi|153817027|ref|ZP_01969694.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae NCTC 8457]
gi|153822999|ref|ZP_01975666.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae B33]
gi|153825402|ref|ZP_01978069.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae
MZO-2]
gi|153828070|ref|ZP_01980737.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae
623-39]
gi|227812436|ref|YP_002812446.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae M66-2]
gi|229505985|ref|ZP_04395494.1| murein-DD-endopeptidase [Vibrio cholerae BX 330286]
gi|229510158|ref|ZP_04399638.1| murein-DD-endopeptidase [Vibrio cholerae B33]
gi|229514293|ref|ZP_04403754.1| murein-DD-endopeptidase [Vibrio cholerae TMA 21]
gi|229517711|ref|ZP_04407156.1| murein-DD-endopeptidase [Vibrio cholerae RC9]
gi|229526636|ref|ZP_04416040.1| murein-DD-endopeptidase [Vibrio cholerae bv. albensis VL426]
gi|229528279|ref|ZP_04417670.1| murein-DD-endopeptidase [Vibrio cholerae 12129(1)]
gi|229605517|ref|YP_002876221.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MJ-1236]
gi|254224796|ref|ZP_04918412.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V51]
gi|254284501|ref|ZP_04959468.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae AM-19226]
gi|254850028|ref|ZP_05239378.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MO10]
gi|255746384|ref|ZP_05420331.1| murein-DD-endopeptidase [Vibrio cholera CIRS 101]
gi|262158262|ref|ZP_06029379.1| murein-DD-endopeptidase [Vibrio cholerae INDRE 91/1]
gi|262169138|ref|ZP_06036831.1| murein-DD-endopeptidase [Vibrio cholerae RC27]
gi|262190555|ref|ZP_06048797.1| murein-DD-endopeptidase [Vibrio cholerae CT 5369-93]
gi|297580128|ref|ZP_06942055.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae RC385]
gi|298499649|ref|ZP_07009455.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MAK 757]
gi|9658302|gb|AAF96768.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549407|gb|EAX59436.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 2740-80]
gi|121631092|gb|EAX63469.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V52]
gi|124114127|gb|EAY32947.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae 1587]
gi|124123990|gb|EAY42733.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MZO-3]
gi|125622859|gb|EAZ51177.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae V51]
gi|126512437|gb|EAZ75031.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae NCTC 8457]
gi|126519469|gb|EAZ76692.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae B33]
gi|146314502|gb|ABQ19042.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O395]
gi|148876479|gb|EDL74614.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae
623-39]
gi|149740948|gb|EDM55025.1| D-alanyl-D-alanine carboxypeptidase family protein [Vibrio cholerae
MZO-2]
gi|150425286|gb|EDN17062.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae AM-19226]
gi|227011578|gb|ACP07789.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae M66-2]
gi|227015517|gb|ACP11726.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae O395]
gi|229334641|gb|EEO00127.1| murein-DD-endopeptidase [Vibrio cholerae 12129(1)]
gi|229336794|gb|EEO01812.1| murein-DD-endopeptidase [Vibrio cholerae bv. albensis VL426]
gi|229345747|gb|EEO10720.1| murein-DD-endopeptidase [Vibrio cholerae RC9]
gi|229348273|gb|EEO13231.1| murein-DD-endopeptidase [Vibrio cholerae TMA 21]
gi|229352603|gb|EEO17543.1| murein-DD-endopeptidase [Vibrio cholerae B33]
gi|229356336|gb|EEO21254.1| murein-DD-endopeptidase [Vibrio cholerae BX 330286]
gi|229372003|gb|ACQ62425.1| murein-DD-endopeptidase [Vibrio cholerae MJ-1236]
gi|254845733|gb|EET24147.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MO10]
gi|255736138|gb|EET91536.1| murein-DD-endopeptidase [Vibrio cholera CIRS 101]
gi|262022419|gb|EEY41127.1| murein-DD-endopeptidase [Vibrio cholerae RC27]
gi|262029944|gb|EEY48591.1| murein-DD-endopeptidase [Vibrio cholerae INDRE 91/1]
gi|262033566|gb|EEY52062.1| murein-DD-endopeptidase [Vibrio cholerae CT 5369-93]
gi|297535774|gb|EFH74608.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae RC385]
gi|297541630|gb|EFH77681.1| D-alanyl-D-alanine endopeptidase [Vibrio cholerae MAK 757]
Length = 316
Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 71/318 (22%), Positives = 121/318 (38%), Gaps = 29/318 (9%)
Query: 1 MRQF-----LVIIAMAMLSNIFPFLSIA--------------ETNKLPYYTLLDTNTGHV 41
M+ F +++I +++ I + + + ++D T +
Sbjct: 1 MKIFSRLGHVLLICSSLIIAIPAHSADSSTTTKAGVKKTVKKQELSANSALVIDLKTNEI 60
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
I N PD AS+TKLMTA V A L I K+A E +S K GS
Sbjct: 61 IYSNNPDAVKPIASVTKLMTAIVTLDAKLPMDAKLPITI---KDAKEMKGVHSRVKIGSE 117
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
++ + L L ++ S N A ++A K F++ MN +K LG+ T F+ G+
Sbjct: 118 ISRKDMLLLTLMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMKNTRFVEPTGLSAK 177
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGM 216
T + +L K + K + +Y NTN V D
Sbjct: 178 NVSTARDLVVLLKASKKYPLLGKLSATDKKTVTFSKPRYTLDFRNTNRLVHNDNWKIDLT 237
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
KTGFT A+G +V G + + V+L + + + L + ++
Sbjct: 238 KTGFTNAAGHCLVMRTQMGRRQVAFVVLDTKGKLSPVGDANRLRTW--IETGKVTPLSSE 295
Query: 277 IKDFYQQNLSNEVPNISE 294
K + +Q ++ IS+
Sbjct: 296 AKQYKKQRSQEQIAKISD 313
>gi|227486995|ref|ZP_03917311.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227093069|gb|EEI28381.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 402
Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 61/249 (24%), Positives = 102/249 (40%), Gaps = 11/249 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
++ S+ + + + D +TG + A P + PAS+ K++ A V +
Sbjct: 83 VSVPEGFSLPDGLLAHSFLVFDLDTGDIYAAKDPHGRYRPASIIKVLLASVAID-----R 137
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
LT + ++ +S+ S++ G T+D+ L L++ S ND A AIA+ L E+
Sbjct: 138 LSLTDSMEVTAESSDQEGSSAGIGPGGRYTVDDLLHGLLMASGNDTAHAIAQLLGGDEEA 197
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
+ +N + +LG + T + G+ G T+A DMA+ + K
Sbjct: 198 L-RMVNARALDLGSTDTRVASYSGLDSAGMQTSAYDMALFFTDAWSKPTFREILGTEKYD 256
Query: 194 -----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ G + N N + A G KTGFT + V + L AVIL A
Sbjct: 257 FPGFKDNPGFEMWNDNRMLFVNENALGGKTGFTDDARHTYVGAMNHKGHRLAAVILDAEA 316
Query: 249 RNTRNKVSA 257
R A
Sbjct: 317 SKKRAWEMA 325
>gi|240127722|ref|ZP_04740383.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae
SK-93-1035]
gi|268686110|ref|ZP_06152972.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-93-1035]
gi|268626394|gb|EEZ58794.1| D-alanyl-D-alanine-endopeptidase [Neisseria gonorrhoeae SK-93-1035]
Length = 312
Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 48/246 (19%), Positives = 98/246 (39%), Gaps = 10/246 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+++ TG ++ + D AS++KLM+A VV + +TI+ +
Sbjct: 70 LSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLDMNETVTITPD 125
Query: 86 ASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ + S G+ +T L L ++ S N A+ + FV MN +++
Sbjct: 126 EIDRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQS 185
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK---GLEIKGKKYP 201
LG+ + F G+ + +TA+D++++ + + + Y
Sbjct: 186 LGMYGSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQIRTNSTSNYASVQTKNGQQNYK 244
Query: 202 NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N+N V + + KTG+ +G ++V A +Q + V+L + TR + +
Sbjct: 245 NSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQPVTIVLLNSPTSATRVNDARKIE 304
Query: 261 SMGFYN 266
S
Sbjct: 305 SWMLQQ 310
>gi|15894280|ref|NP_347629.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Clostridium acetobutylicum ATCC 824]
gi|15023901|gb|AAK78969.1|AE007615_3 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Clostridium acetobutylicum ATCC 824]
gi|325508407|gb|ADZ20043.1| D-alanyl-D-alanine carboxypeptidase (penicilin binding protein)
[Clostridium acetobutylicum EA 2018]
Length = 426
Score = 116 bits (289), Expect = 5e-24, Method: Composition-based stats.
Identities = 64/343 (18%), Positives = 120/343 (34%), Gaps = 31/343 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK-----EKKAMLTT 78
+D TG VI D PAS TKL+T+ ++ K
Sbjct: 29 PDIAGTSAISIDAKTGEVIYAKNQDAKAFPASTTKLLTSIILNENKKPSDYLYYSESAKE 88
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK---KFV 135
S + + +P + + + + A I + T++ F
Sbjct: 89 QPEYSFDKNIHPLNVGEKLPSDVVLKSLLMYSANDMAYVIAANLINKINSPTDEVKKDFS 148
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG--- 192
MNN K LGL THF+ +G+ HY+TA DM+ ++ + K
Sbjct: 149 IIMNNEVKKLGLKNTHFVTPNGLHDPDHYSTAYDMSRIAKTAFSINWILKTISTQKTTVT 208
Query: 193 -LEIKGKKYPNTNWAVG-----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ + NTN + G KTG+T +G ++ + ++ +I V++ +
Sbjct: 209 LNDGAKPELKNTNKIIDPKEPVYDKTCIGGKTGYTNEAGRCLITIFNRNNKKIIGVVMKS 268
Query: 247 ---LDRNTRNKVSASLLSMGF----------YNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
D K +L++ + + I Y ++ + +VP +
Sbjct: 269 QYDKDDVQVFKDMNNLINYSYSIKPTILYHKNKVYKYEIIKYRPLKYFGYYKTIKVPLVP 328
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+E T K N +++ K + + + T + N K+
Sbjct: 329 KEDVTYYKNSFN-DSEKKLTEKISINPWNLSTDTAVGNLTLKE 370
>gi|261212871|ref|ZP_05927155.1| murein-DD-endopeptidase [Vibrio sp. RC341]
gi|260837936|gb|EEX64613.1| murein-DD-endopeptidase [Vibrio sp. RC341]
Length = 300
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 66/276 (23%), Positives = 106/276 (38%), Gaps = 10/276 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++D T VI + PD AS+TKLMTA V A L I
Sbjct: 27 QELAANSALVIDLKTNEVIYSSNPDAVKPIASVTKLMTAMVTLDAKLPMDAKLPITI--- 83
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
K A E +S + GS ++ L L ++ S N A ++A K F++ MN +K
Sbjct: 84 KEAKEMKGVHSRVRIGSEISRKEMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAK 143
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--- 200
LG+ T F+ G+ + + + +L K + K + +Y
Sbjct: 144 ALGMKNTRFVEPTGLSEQNVSSARDLVLLLKASKKYPMLGQLSSTDKKTVTFAKPRYTLD 203
Query: 201 -PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
NTN V D KTGFT A+G +V G + + V+L + + +
Sbjct: 204 FRNTNRLVHNDNWRIDLTKTGFTNAAGHCLVMRTQMGKRQVAFVVLDTKGKLSPAGDATR 263
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
L + I K + +Q ++ IS+
Sbjct: 264 LRTWL--ETGKVTPIPADAKQYKKQRNQEQIAKISD 297
>gi|330953321|gb|EGH53581.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae Cit 7]
Length = 311
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 58/281 (20%), Positives = 102/281 (36%), Gaps = 22/281 (7%)
Query: 1 MRQFLVIIAMAMLSN----IFPFLSIAETN----------KLPYYTLLDTNTGHVIAENY 46
M+ L + + + P L+ ++D T V+ +
Sbjct: 1 MKIRLSFLGLLFVLTGPVLSTPTLANEPAVLNRDPSNLHLASGSAMVIDLQTDKVLYSSN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
PD AS+TKLMTA VV + ++ I+ + S K GS M +
Sbjct: 61 PDVIVPIASVTKLMTAMVVLDAKQPMDEVIPVNISQTPE---MKGVFSRVKLGSEMNRRD 117
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
L + ++ S N A ++A S F+ MN +K LG+ T ++ G+ + T
Sbjct: 118 MLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYNVSTA 177
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLG-ADGMKTGFT 221
++ K + + K + + Y NT+ V KTGFT
Sbjct: 178 RDLTKLVMAARKYPLLSELSTTEQKTVTFRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFT 237
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V ++ + VIL A + T ++ +
Sbjct: 238 NQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASRIRKW 278
>gi|110598043|ref|ZP_01386322.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium ferrooxidans
DSM 13031]
gi|110340302|gb|EAT58796.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium ferrooxidans
DSM 13031]
Length = 486
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 66/275 (24%), Positives = 118/275 (42%), Gaps = 23/275 (8%)
Query: 6 VIIAMAMLSNIFPFLSIAET------NKLP--YYTLLDTNTGHVIAENYPDHPWNPASLT 57
+ S P L AE + P Y + D + V+ D P +PASLT
Sbjct: 58 ICFFAFTASIALPALLHAEPGNGSYQIQAPVDSYIVKDLCSSRVVMAKDIDRPVSPASLT 117
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K++T + K L + I++ ++ PS + F+ G + L + +K +V S+N
Sbjct: 118 KILTCIMAIESGK-----LDQDVVITRESTNVEPSKAGFRVGERIRLLDLVKAAMVNSSN 172
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---HGHYTTARDMAILS 174
D A AIA L + FV MN+ ++ +G+ + F N G + G+ +TA D+ L+
Sbjct: 173 DAAFAIAIHLSGSVDAFVASMNSRARAIGMRNSRFTNPAGFDKGIYAGNTSTAGDLLCLT 232
Query: 175 WRIKTDFPQYM-----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ ++ K N +G + A G+KTG+T +G ++
Sbjct: 233 EYSVRNPVFNAVARLDRAVFVEQSTRKVYSLKTHNKLLGRYPYAVGIKTGYTGRAGRCLI 292
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
AI+ ++ ++ V+L + R V+A +
Sbjct: 293 GRAIKDNRDILLVMLNSRT--DRWNVAAEMFDRAL 325
>gi|104782270|ref|YP_608768.1| D-alanyl-D-alanine endopeptidase [Pseudomonas entomophila L48]
gi|95111257|emb|CAK15977.1| D-alanyl-D-alanine endopeptidase; penicillin-binding proteins 7 and
8 [Pseudomonas entomophila L48]
Length = 308
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 51/242 (21%), Positives = 90/242 (37%), Gaps = 8/242 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L+D NT + ++ D AS+TKLMTA VV ML+ I +
Sbjct: 41 LASGSALLIDLNTNQELYSSHADRVRPIASVTKLMTAMVVLDAKLPMDEMLSMTIANNPE 100
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + GS + L + ++ S N A ++A F++ MN +++L
Sbjct: 101 ---MKGVYSRVRLGSELNRRETLLITLMSSENRAANSLANHYPGGYGAFIKAMNAKARSL 157
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---- 201
G+S T ++ G+ T +L K + + K + + Y
Sbjct: 158 GMSHTRYVEPTGLSTLNVSTAQDLAKLLMASRKYPMLSELSTTREKTVAFRKPNYTLGFR 217
Query: 202 -NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
+ + KTGFT +G +V ++ + VIL A + T ++ +
Sbjct: 218 NTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAYGKYTHFADASRMR 277
Query: 261 SM 262
Sbjct: 278 QW 279
>gi|221124426|ref|XP_002164451.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
Length = 257
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 54/235 (22%), Positives = 98/235 (41%), Gaps = 10/235 (4%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPP 91
++D +T V+ + AS+TKLMT VV + + I I++ +
Sbjct: 1 MVDQDTKEVLFSKNENAVLPIASITKLMTGVVVSEA----RLSMDETIEITQADVDTEKG 56
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S+S + G+ ++ L L ++ S N A A+ + + FV MN ++ LG++ T
Sbjct: 57 SSSRLRVGTELSRGELLHLALMASENRAAHALGRTFPGGLQHFVGLMNQKARILGMTDTQ 116
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE---IKGKKYPNTNWAVG 208
++ G+ + ++A+D+A L +D + +Y NTN V
Sbjct: 117 YVEPTGL-NSRNQSSAKDLATLVNYAYSDATLRELSTSTGYQVEVGNRTLQYNNTNRLVK 175
Query: 209 TFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
G KTG+ +G +V A + LI V L + + TR + +
Sbjct: 176 NPAWEIGLQKTGYITEAGQCLVMQAKIAGRKLIMVFLDSAGKLTRIADAERVRKW 230
>gi|229824659|ref|ZP_04450728.1| hypothetical protein GCWU000282_02006 [Catonella morbi ATCC 51271]
gi|229786030|gb|EEP22144.1| hypothetical protein GCWU000282_02006 [Catonella morbi ATCC 51271]
Length = 454
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 53/393 (13%), Positives = 136/393 (34%), Gaps = 64/393 (16%)
Query: 1 MRQ---FLVIIAM-----AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ FL ++ A+ + + +D +G ++ + P
Sbjct: 1 MKKRNLFLAFFSLWLGLQALATTAIQAVGTEPNLNAQSAIAVDAASGQILYQKNPMALLE 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNAL 108
+LTKL++ +++ L ++K L +T+S A Y SN ++ ++ L
Sbjct: 61 VGNLTKLLSLLIIYDALDQEKIHLDDRVTLSDEAYALSQNYEISNVPLRQDLDYSVAELL 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA---------THFMNAHGVV 159
+ + + SAN +A+AE ++ F M +++ + +
Sbjct: 121 EAVEIGSANGALLALAEYTAGSKAAFQDLMQAKVQSILADSDKINEVDRAEWLALVPELT 180
Query: 160 Q--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKY 200
+ A +A +S+++ + P+ + +I + +
Sbjct: 181 NLTGLIEQEEGVASKQQNKLNAIILAAVSYQLVSHHPELLDNTKIDAKLFRQGTDDQFEM 240
Query: 201 PNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
N+N + DG+ + T G+ V + + + +I + LG + + S
Sbjct: 241 HNSNQMLAGQAYEYDQVDGLMSAATAHDGYGTVQTMARDNFRVIVLTLGNSESSQSYHDS 300
Query: 257 ASLLSMGFYNKTDRKKINYI------------------IKDFYQQNLSNEVP--NISEEV 296
LL + ++ I+ ++ +Y +NL +P + + +
Sbjct: 301 KKLLDYVYGTYQLKRVISTGDSVTQINQLLAHDGEPEQVQAYYGENLDLAIPIVDTTPRI 360
Query: 297 CTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + + + ++ + I +
Sbjct: 361 DYLFEPDTSLVSAIDNGWNIQAPQAGGQTIGQV 393
>gi|218767872|ref|YP_002342384.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis
Z2491]
gi|121051880|emb|CAM08186.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis
Z2491]
gi|308388939|gb|ADO31259.1| putative D-alanyl-D-alanine-endopeptidase; penicillin-binding
protein 4 [Neisseria meningitidis alpha710]
gi|325127864|gb|EGC50770.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis N1568]
gi|325131795|gb|EGC54495.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis M6190]
gi|325133735|gb|EGC56391.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis M13399]
gi|325136025|gb|EGC58635.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis M0579]
gi|325137845|gb|EGC60420.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis ES14902]
gi|325144211|gb|EGC66518.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis M01-240013]
gi|325202452|gb|ADY97906.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis M01-240149]
gi|325206406|gb|ADZ01859.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis M04-240196]
gi|325207796|gb|ADZ03248.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis NZ-05/33]
Length = 312
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 105/264 (39%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 48 IEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 107
Query: 64 VVFSFLKEKKAMLTTPITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + S G+ +T L L ++ S N A
Sbjct: 108 VVLDA----NLDMNETVTITPDEIDRIKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 163
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ + F G+ + +TA+D++++
Sbjct: 164 LGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 222
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 223 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 282
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 283 VTIVLLNSPTSATRVNDARKIESW 306
>gi|304387942|ref|ZP_07370115.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis ATCC
13091]
gi|304338039|gb|EFM04176.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis ATCC
13091]
Length = 316
Score = 116 bits (289), Expect = 6e-24, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 52 IEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 111
Query: 64 VVFSFLKEKKAMLTTPITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + S G+ +T L L ++ S N A
Sbjct: 112 VVLDA----NLDMNETVTITPDEIDRIKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 167
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ ++ F G+ + +TA+D++++
Sbjct: 168 LGRTYPGGMGAFVAAMNRKAQSLGMYSSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 226
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 227 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 286
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 287 VTIVLLNSPTSATRVNDARKIESW 310
>gi|167581319|ref|ZP_02374193.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis TXDOH]
gi|257138600|ref|ZP_05586862.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis E264]
Length = 364
Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 102/248 (41%), Gaps = 10/248 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV +
Sbjct: 103 TPDSLALRSSVAYVVDQNTAEPLFDKNSRAVVPIASITKLMTAMVVLDSKAPLTEQIDVT 162
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 163 D---EDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 219
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+K+LG++ THF N+ G+ + ++ARD+ + +P + + E+ K
Sbjct: 220 AKAKSLGMNDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVNTGK 277
Query: 200 ----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 278 RMLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFA 337
Query: 255 VSASLLSM 262
++ + +
Sbjct: 338 DASRVRNW 345
>gi|316983735|gb|EFV62716.1| D-alanyl-D-alanine endopeptidase [Neisseria meningitidis H44/76]
gi|325197971|gb|ADY93427.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis G2136]
Length = 312
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 48 IEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 107
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + + S G+ +T L L ++ S N A
Sbjct: 108 VVLDA----NLDMNETVTITPDEIDRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 163
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ + F G+ + +TA+D++++
Sbjct: 164 LGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 222
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 223 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 282
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 283 VTIVLLNSPTSATRVNDARKIESW 306
>gi|139438318|ref|ZP_01771871.1| Hypothetical protein COLAER_00860 [Collinsella aerofaciens ATCC
25986]
gi|133776515|gb|EBA40335.1| Hypothetical protein COLAER_00860 [Collinsella aerofaciens ATCC
25986]
Length = 469
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 65/342 (19%), Positives = 125/342 (36%), Gaps = 36/342 (10%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++ G V D AS+TK+MTA + K + +T+S
Sbjct: 81 PDIDATNALVM-GKDGTVYYGRGADEQVKIASITKVMTAILTVENCK-----MDEKVTVS 134
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--------KFV 135
A+ S + +G +T++ AL+ L++ S ND A+ +AE + K FV
Sbjct: 135 NAAATVGNSTAGLLEGDELTVEQALRGLMIPSGNDAAIVLAEYVGKKIDPKTKDAEATFV 194
Query: 136 QHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ MN +K LG + T F N HG+ ++TA D+A++ +
Sbjct: 195 KAMNERAKKLGCTGTLFENPHGLDFDEWAGDMHSTAHDVALMMQEAMKNDTIREVVASED 254
Query: 192 GL--------EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
N+ +G G G KTG T +G+ ++ + + VI
Sbjct: 255 SWIEVTGADGTDHSHSMDTHNYLLGQ-DGNIGGKTGTTDDAGYCFTSAYNRDGDEIYTVI 313
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD---------FYQQNLSNEVPNISE 294
L + + R +A+L++ + +K N K Q + +++ + +
Sbjct: 314 LNSTTTDQRFTDTATLVNWYYDHKVTVAIANTQEKTANGNPLMARISQTDWTDKTIDATL 373
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
Q + + ++ E + + + K+
Sbjct: 374 ADPAAQATVFSLAGEVTEKVSYDDLSGTVHVGDKVGSVTLKQ 415
>gi|229087522|ref|ZP_04219654.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
gi|228695769|gb|EEL48622.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
Length = 273
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 56/269 (20%), Positives = 106/269 (39%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + Y +D +TG ++ PAS+ K+MT
Sbjct: 9 FTSMIFFSYAKRQKDVRVNQPAITGKYAITIDADTGEILYGKREQERSYPASIAKMMTTL 68
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +K+ ITI++NA + + G + D ALKL+++ SA+ ++
Sbjct: 69 LLLENVKK-----DEEITITENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPVSE 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + +++ F++ MN +K LG F NA G G+ + D+AI++
Sbjct: 124 SIAEHIAGSKEAFIKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 183
Query: 182 PQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ K N A G K+G + + +V +
Sbjct: 184 IVLDYMNTTRTTLHTSMRSPKIANYGREELYDDPYAIGSKSGLSALGNYTVVTVNEMNGK 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + RN + + F
Sbjct: 244 RVINVVL-SSTRNQLYPDTKKMAHYAFEQ 271
>gi|257125213|ref|YP_003163327.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis
C-1013-b]
gi|257049152|gb|ACV38336.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis
C-1013-b]
Length = 485
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 70/304 (23%), Positives = 122/304 (40%), Gaps = 12/304 (3%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98
G ++ + ASLTK+M V + A + + + + S K
Sbjct: 145 GKILKDKMSRQQHPIASLTKVMNILVALDQIDRGNAKIDDKVCFTPDTVNMGGSWLNAKA 204
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHG 157
G TL + L+ I+ SAN+ A +A+ + K FV+ MN +K LG++ TH+ G
Sbjct: 205 GDCYTLKDLLRAEIIYSANNAAYMVAKHIGKGNLDNFVKLMNQKAKELGMNDTHYYTPAG 264
Query: 158 VVQHGHY-----TTARDMAILSWRIKTDFPQYMHYFQ----IKGLEIKGKKYPNTNWAVG 208
+ +TA DM +L R D + ++ E + Y N N +
Sbjct: 265 LPTSMTNKGMDTSTAYDMYLLGRRAIRDERLKAWMKESELVLQNSEGEDVIYNNRNHLLN 324
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
F G G+KTGF +G+N++ S+ G+ +I+V LG + R K +
Sbjct: 325 KF-GIYGLKTGFHVQAGYNMIVSSKIGNLEIISVTLGNKSDDARTKDQTQEFTQLEKRMI 383
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
K I + ++ + E I+ + T +I N N + + K + K +
Sbjct: 384 PVYKAGQEIGNKFRIKGTKE-KKIAGVLSTNVYQIDNTNYKFEVKDLKITTENGISKGDV 442
Query: 329 LKNK 332
+
Sbjct: 443 IGKL 446
>gi|226942291|ref|YP_002797364.1| penicillin-binding protein 7 [Azotobacter vinelandii DJ]
gi|226717218|gb|ACO76389.1| penicillin-binding protein 7 precursor [Azotobacter vinelandii DJ]
Length = 318
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 55/282 (19%), Positives = 107/282 (37%), Gaps = 24/282 (8%)
Query: 1 MRQ---FLVIIAMAMLSNIFPF-----------LSIAETNKLPYYTLLDTNTGHVIAENY 46
M+ FL ++ + P ++D NTG + N+
Sbjct: 1 MKTHPSFLALLLACACVVVMPGVQAVDKVPPVRTPPPLELASASALVIDLNTGRELFANH 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
PD AS++KLMTA V + + I ++ S + S ++
Sbjct: 61 PDVIVPIASISKLMTAMVTLDARQPLDEAIPVRIHDTREL---RGVYSRVRVNSLISRRE 117
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
L+L ++ S N A ++A + +FV MN ++ L + +T F+ G+ + +T
Sbjct: 118 MLRLALMSSENRAAASLAHNYPGGHARFVAAMNAKARALSMHSTRFVEPTGL-SERNVST 176
Query: 167 ARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGF 220
ARD+A L + + + + + + NTN V + KTGF
Sbjct: 177 ARDLAKLLRAARQYPLIRELSTTPSHSAYFQQPRYVQNFNNTNPLVRNPDWRIEVTKTGF 236
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G + A+ ++ + V+L L +++ + +
Sbjct: 237 IDEAGHCLALLAVIQNRPVAMVLLNTLGKHSHVGDANRVRQW 278
>gi|119773214|ref|YP_925954.1| D-alanyl-D-alanine endopeptidase [Shewanella amazonensis SB2B]
gi|119765714|gb|ABL98284.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Shewanella amazonensis SB2B]
Length = 303
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 65/279 (23%), Positives = 106/279 (37%), Gaps = 21/279 (7%)
Query: 1 MRQFLV-----IIAMAMLSNIFPFLS------IAETNKLPYYTLLDTNTGHVIAENYPDH 49
M+ L ++ + +LS + + L+DT T V+ + P
Sbjct: 1 MKSKLFKYISPLLMLGLLSATSAQGAVKSDAKPTQELASYSALLVDTKTNEVLYASNPHQ 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNAL 108
AS++KLMTA V K L I + K+ E S + GST++ A+
Sbjct: 61 VVPIASISKLMTAMVTLDA----KLPLGEKIAVEVKDNPEMKNVVSRIRLGSTLSRKEAM 116
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L ++ S N A +A + FV+ MN +K LG++ T F+ G+ H T A
Sbjct: 117 LLTLMSSENRAATTLAHHYPGGYQAFVKAMNAKAKALGMTNTRFVEPTGLSVHNVSTAAD 176
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCA 223
+ +L + K + +Y NTN V KTGFT A
Sbjct: 177 LVKLLKAAQDYPLLGQLSSTPSKSVTFGKPRYSLAFYNTNRLVNKDNWDIRLTKTGFTDA 236
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V + + V+L + + T + L
Sbjct: 237 AGHCLVMLTKMAKRDVAFVVLDSFGKQTHLGDAGRLKKW 275
>gi|83719638|ref|YP_442398.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis E264]
gi|83653463|gb|ABC37526.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis E264]
Length = 415
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 102/248 (41%), Gaps = 10/248 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV +
Sbjct: 154 TPDSLALRSSVAYVVDQNTAEPLFDKNSRAVVPIASITKLMTAMVVLDSKAPLTEQIDVT 213
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 214 D---EDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAMN 270
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+K+LG++ THF N+ G+ + ++ARD+ + +P + + E+ K
Sbjct: 271 AKAKSLGMNDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVNTGK 328
Query: 200 ----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 329 RMLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFA 388
Query: 255 VSASLLSM 262
++ + +
Sbjct: 389 DASRVRNW 396
>gi|229175705|ref|ZP_04303213.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
gi|228607846|gb|EEK65160.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
Length = 301
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 57/267 (21%), Positives = 106/267 (39%), Gaps = 8/267 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 37 FTGMIFFSYAQRQQAVRADQPNITGQYGITIDADTGEILYGKREDERSYPASIGKMMTTL 96
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++ +KE + + T I +E + G + D ALKL+++ SA+ IA +I
Sbjct: 97 LLLENVKENEEITVTENAI---KTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAESI 153
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + ++ +FV+ MN +K LG F NA G G+ + D+A+++
Sbjct: 154 AEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAMITKEALKYPVV 213
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + ++ PN A G K+G + + +V + + +
Sbjct: 214 LEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGKRV 273
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYN 266
I V+L + R + + F
Sbjct: 274 INVVL-SSTRTQLYPDTKKMAHYAFQQ 299
>gi|282866806|ref|ZP_06275843.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
sp. ACTE]
gi|282558352|gb|EFB63917.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
sp. ACTE]
Length = 320
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 64/270 (23%), Positives = 108/270 (40%), Gaps = 20/270 (7%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGH----VIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ LLD G + A D + AS TK+MTA VV +
Sbjct: 53 APATGDQATPDVAIENAFLLDARDGSQERPMWAGTKADESVSMASTTKIMTALVVLQHPE 112
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA------ 124
+T + S + + G +T L +++ S D A+A+A
Sbjct: 113 WLDRQITVKQEYRDYVTANGASTADLQTGDKLTARQLLHAMLIPSGGDAAMALADSFGNG 172
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI------- 177
++ F MN ++ LGL+ THF + G+ + +TARD+A L R
Sbjct: 173 DTQEARIADFQDQMNTHAQQLGLTGTHFDSFDGISHGDNRSTARDLAKLGQRAMLKPVFA 232
Query: 178 -KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
QY + + TN + T+ GA G+KTG +G+++V +A + +
Sbjct: 233 DIVKLEQYETEAPAANGRTRYYTWNTTNDLLSTYDGALGVKTGSGSEAGYSLVFAAERDN 292
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYN 266
++L+ I+GA +A +L GF +
Sbjct: 293 RTLVGAIVGAD--QEVFADAAKMLDWGFTH 320
>gi|329942386|ref|ZP_08291196.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila
psittaci Cal10]
gi|332287027|ref|YP_004421928.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC]
gi|325506477|gb|ADZ18115.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila psittaci 6BC]
gi|328815296|gb|EGF85284.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila
psittaci Cal10]
Length = 398
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 59/332 (17%), Positives = 119/332 (35%), Gaps = 40/332 (12%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL-----KEKKAMLTTPITISKNAS 87
++ TG V+ D PAS+TK+ TA + + +I+ A
Sbjct: 3 VVHAETGKVLYAKDIDKRIYPASMTKIATALFILKKHPDVLNRFIIVKPDAIASITPQAK 62
Query: 88 EYPPSNSTFKK------------GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+ S ++ + L++ SAND A A+A + + +F+
Sbjct: 63 KQSGYRSPPHWLETDGVTIQLQNKEEVSGWDLFHALLICSANDAANALAIACSGSVVEFM 122
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-------PQYMHYF 188
+ +N+ + +G + THF N HG+ HYTTA D+ + +
Sbjct: 123 KQLNDFLREIGCAHTHFNNPHGLHHPNHYTTAGDLTRIMREGLKEPLFRQVIRTTNYKMA 182
Query: 189 QIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ + N + + A G KTG T +G N+V +A + +S+I + G
Sbjct: 183 PTNLSQERILNLTNKLILPGSTYYYPPALGGKTGTTKDAGKNLVFAAKKHGRSIITIAAG 242
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
+ + +L F + R+ + + + + + ++ +
Sbjct: 243 YSVMSELYEDVIALCEGVFNEQPLRRYLIPPTEKYTLR------LGLLGKISIPLPHGVY 296
Query: 306 YNTQMKEAKDKESH-------FIDFEKITLLK 330
Y+ E ++ ++ + K LL
Sbjct: 297 YDFYASEGEEPKTLSFVPHATKLPIHKGDLLG 328
>gi|254518434|ref|ZP_05130490.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
7_2_43FAA]
gi|226912183|gb|EEH97384.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
7_2_43FAA]
Length = 429
Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats.
Identities = 67/293 (22%), Positives = 113/293 (38%), Gaps = 30/293 (10%)
Query: 1 MRQ--FLVIIAMAMLSNIFPFLS----------IAETNKLPYYTLLDTNTGHVIAENYPD 48
M++ L +A+A+ ++ + +D NTG +I D
Sbjct: 1 MKKKNLLKSLAVALSISLLAPFANKVSAQETNIQTPEIIGEAAVTMDINTGEIIYSKNAD 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+PAS TKLMTA + F+ K K LT T+ K + G ++ ++ +
Sbjct: 61 LKLSPASTTKLMTALL-FAENKSKSDTLTFSDTVVKVTETSLNNYKAINPGDKISAEDTM 119
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------VQ 160
K +++ SAND A +AES+ T F+ MN+ + LGL THF+N G+
Sbjct: 120 KAVMIFSANDTAYLMAESVGGTVDNFINMMNDKAAELGLKNTHFVNPSGLEIDPLNPSNT 179
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL-----EIKGKKYPNTNWAVGTFLGADG 215
+ TTA D+A + + G + N +G G G
Sbjct: 180 EINQTTAYDLAQIGIAAFKNDWVRETMAPKSGEISVSLSGTPIIIESRNKLLGKN-GNIG 238
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGAL---DRNTRNKVSASLLSMGFY 265
KTG +G V + + L+ V+L + + + L + +
Sbjct: 239 GKTGTEEQAGHCFVGFYERDGRDLVTVVLKSEYGATGLNVFEDTEKLANYSYS 291
>gi|161869693|ref|YP_001598860.1| D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis 053442]
gi|161595246|gb|ABX72906.1| D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis 053442]
Length = 316
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 52 IEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 111
Query: 64 VVFSFLKEKKAMLTTPITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + S G+ +T L L ++ S N A
Sbjct: 112 VVLDA----NLDMNETVTITPDEIDRIKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 167
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ ++ F G+ + +TA+D++++
Sbjct: 168 LGRTYPGGMGAFVAAMNRKAQSLGMYSSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 226
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 227 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 286
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 287 VTIVLLNSPTSATRVNDARKIESW 310
>gi|310828855|ref|YP_003961212.1| hypothetical protein ELI_3287 [Eubacterium limosum KIST612]
gi|308740589|gb|ADO38249.1| hypothetical protein ELI_3287 [Eubacterium limosum KIST612]
Length = 543
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 73/378 (19%), Positives = 129/378 (34%), Gaps = 57/378 (15%)
Query: 1 MRQFLVIIAMAMLSNI-----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ ++ + A+L + ++ + + N+G V+ E D + PAS
Sbjct: 1 MKRKIISVLGALLLVFGGFGSSAWAAMPSFGPDEGVVVFEVNSGDVLVEQNADERYYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS--TFKKGSTMTLDNALKLLIV 113
TKLMTA ++ L +T+ +S + G T + L L++
Sbjct: 61 TTKLMTALTALDYVGS---SLNDKVTVGDEVKLIGYESSVAHLEVGEIYTWEQLLYALLL 117
Query: 114 KSANDIAVAI------------AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
S ND A I + FV MN ++ +GL THF NAHG+
Sbjct: 118 PSGNDAANVIAANIGRKISGNEKMDYNQAMSVFVDQMNAKAQQMGLKNTHFKNAHGLHDP 177
Query: 162 GHYTTARDMAILSWRIKTDFP----QYMHYFQIKGLEIKGKKYPNTNW------------ 205
HYTT DMA++ T+ + +++ + +K+ NT+
Sbjct: 178 DHYTTPADMAVIGKTAFTNETISKVEGTKVYEMTTNRGEPQKWKNTDMLLYKDAADYGGT 237
Query: 206 -------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR--------- 249
A G KTG T +G V +A GD ++ VI+ ++
Sbjct: 238 IEEGRTDNPYYNAKAKGGKTGNTDEAGRCFVYNAEDGDAKIVGVIMKGDEKGIFAEASNT 297
Query: 250 -NTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNT 308
N LL + K I + + + + + Y
Sbjct: 298 INAAFDD-NRLLDWT-DDSGHYKDFTVINAHYKDGKNLSVKTKEAYSSMIPKGQEDKYTA 355
Query: 309 QMKEAKDKESHFIDFEKI 326
++ + K+
Sbjct: 356 KVSWDTSLLADTDKGLKV 373
>gi|302205612|gb|ADL09954.1| putative peptidoglycan synthesis related protein [Corynebacterium
pseudotuberculosis C231]
Length = 404
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 61/276 (22%), Positives = 101/276 (36%), Gaps = 14/276 (5%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
N + + D + G VIA P + PAS+ K + A V L +
Sbjct: 87 NEPANTASAWMVFDLDNGDVIATKDPHGRYRPASVIKALLALVALDE-----LNLKAKVK 141
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
I+ + S + G T + L L++ S ND A A+A+ L K + +N
Sbjct: 142 ITAEDANQEGSAVGYVDGVEYTNEQLLYGLLLNSGNDAAHALAQRLGGDNKTL-EKVNAL 200
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE------I 195
+ +LG T+ + G+ G T+A D+A L + + P + + +E
Sbjct: 201 AHSLGTVDTYAASYSGLDAPGMSTSAHDLA-LIYSHAWENPTFAKMVATEHIELPGNAAT 259
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NK 254
+ N N G KTG+T + V + + L AVIL R +
Sbjct: 260 PTFQVWNDNGLFLNDEHGIGGKTGYTDDAHHTFVGAKNIDGRRLAAVILDTTVEQGRPWQ 319
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
+ L+ + K N Q +E+P
Sbjct: 320 QAQKLIDAAYAVPRGEKVGNLKETSIPSQPSPSELP 355
>gi|315221821|ref|ZP_07863733.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus anginosus
F0211]
gi|315189054|gb|EFU22757.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus anginosus
F0211]
Length = 444
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 73/367 (19%), Positives = 140/367 (38%), Gaps = 48/367 (13%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
M ++P + N+ ++D NTG+++ ++ D +PAS++KLMT Y+VF +++
Sbjct: 14 MAQKMYPNEKVNPINRPKSSLIVDANTGNILWQDNIDEVRDPASMSKLMTLYLVFEAIQQ 73
Query: 72 KKAMLTTPITISKNA-----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
K T I + +N + + S +
Sbjct: 74 GKLSENTVIKATPRDEAIAKIYEISNNKIVAGVDYTVSELITMTAVPSSNATTVMLANYL 133
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHG---------------VVQHGHYTTARDMA 171
F+ MN +K LG++ T + NA G + TTARD+A
Sbjct: 134 SNNDPDTFLDMMNAKAKELGMTNTKWFNASGAAAVSFKGLYTPQRYDNNAANQTTARDLA 193
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---------LGADGMKTGFTC 222
IL + ++P ++Y + +K + + G DG+KTG +
Sbjct: 194 ILGYHFVKNYPNILNYTNKPVVTVKKGTPYEETFETYNYSLPGARYAIKGVDGLKTGSSP 253
Query: 223 ASGFNIVASAIQGDQSLIAVILGA------LDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
FN +A+ +G+Q LI+VI+G R+ +L+ + + +K
Sbjct: 254 QGAFNYIATIKRGEQRLISVIMGVGNWSDQDGEYYRHPFGNALIEKAYADYEYKKFFKAG 313
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA--------KDKESHFIDFEKITL 328
Q ++ + N+S++ T K+ ++ + S + + +T
Sbjct: 314 E-----QTINGKRYNLSKDFYATVKKGTAAKAVVENDVLKNDNGLEQLSSLISNGDNVTE 368
Query: 329 LKNKITK 335
+KN K
Sbjct: 369 VKNTAIK 375
>gi|300857885|ref|YP_003782868.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
pseudotuberculosis FRC41]
gi|300685339|gb|ADK28261.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
pseudotuberculosis FRC41]
gi|302330165|gb|ADL20359.1| putative peptidoglycan synthesis related protein [Corynebacterium
pseudotuberculosis 1002]
gi|308275848|gb|ADO25747.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
pseudotuberculosis I19]
Length = 404
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 61/276 (22%), Positives = 100/276 (36%), Gaps = 14/276 (5%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
N + + D + G VIA P + PAS+ K + A V L +
Sbjct: 87 NEPANTASAWMVFDLDNGDVIATKDPHGRYRPASVIKALLALVALDE-----LNLKAKVK 141
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
I+ + S + G T + L L++ S ND A A+A+ L K + +N
Sbjct: 142 ITAEDANQEGSAVGYVDGVEYTNEQLLYGLLLNSGNDAAHALAQRLGGDNKTL-EKVNAL 200
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE------I 195
+ +LG T+ + G+ G T+A D+A L + P + + +E
Sbjct: 201 AHSLGTVDTYAASYSGLDAPGMSTSAHDLA-LIYSHAWKNPTFAKMVATEHIELPGNAAT 259
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NK 254
+ N N G KTG+T + V + + L AVIL R +
Sbjct: 260 PTFQVWNDNGLFLNDEHGIGGKTGYTDDAHHTFVGAKNIDGRRLAAVILDTTVEQGRPWQ 319
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
+ L+ + K N Q +E+P
Sbjct: 320 QAQKLIDAAYAVPRGEKVGNLKETSIPSQPSPSELP 355
>gi|282600912|ref|ZP_05980106.2| serine-type D-Ala-D-Ala carboxypeptidase family protein
[Subdoligranulum variabile DSM 15176]
gi|282570823|gb|EFB76358.1| serine-type D-Ala-D-Ala carboxypeptidase family protein
[Subdoligranulum variabile DSM 15176]
Length = 445
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 61/372 (16%), Positives = 123/372 (33%), Gaps = 39/372 (10%)
Query: 1 MRQFLVIIAMAMLSNIF-----------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++F + +L+ + + A P +++ +T V+ + D
Sbjct: 3 MKRFWALFCTVVLAFVLVLPVAAEGESSALSADAPELTAPAGYVVNLDTNIVVYDKNSDT 62
Query: 50 PWNPASLTKLMTAYVVFSFLKE--KKAMLTTPITISKNAS--EYPPSNSTFKKGSTMTLD 105
ASLTK+MT ++ ++ +T P I S + +KG T TL
Sbjct: 63 QLQAASLTKMMTCLLMLEQYQDQLDTITVTAPSYIYDLIWEKTTNASTADIRKGETQTLR 122
Query: 106 NALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
N L +++ SAN+ A +A+ + + FV MNN + +G + T F + G+ +
Sbjct: 123 NLLYAMLLPSANEAAYIVADYMGGGSIDNFVAMMNNEAAAIGCTGTTFADPCGLDERNVT 182
Query: 165 TTARDMAILSWRIKTDFP-------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD--- 214
T IL D Y + NTN +
Sbjct: 183 TAKDAYLILRALTAYDIVGTVMGTASYDMGTNDRYTTPGTYIIQNTNKMISNTSYYRAYT 242
Query: 215 -GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT----RNK--VSASLLSMGFYNK 267
G KTG N Q ++ I+V+L + R + +L+ +
Sbjct: 243 KGGKTGSLGE-WQNFAGWHSQDGENYISVLLNVPNATDEEGGRPALLETGTLMDWVYATY 301
Query: 268 TDRKKINYIIKDFYQQNLSNEVPNI-----SEEVCTTQKEIINYNTQMKEAKDKESHFID 322
T ++ + + + + ++++ T + +
Sbjct: 302 TIAPALDTTQPITESRIVYSTQTDTVMLYPADDMMTLLPREGGAALTEQVFNLPDHLTAP 361
Query: 323 FEKITLLKNKIT 334
++ ++
Sbjct: 362 LKQGDVVGTVTL 373
>gi|254556248|ref|YP_003062665.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
JDM1]
gi|300768351|ref|ZP_07078254.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|254045175|gb|ACT61968.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
JDM1]
gi|300494078|gb|EFK29243.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 412
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 63/342 (18%), Positives = 127/342 (37%), Gaps = 38/342 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + N+ + ++ +++ ++D +G V+ D ASL+KLMT Y
Sbjct: 15 LTATVSGVLSCNVAAHATSSKADEVKAAYVMDAKSGQVVYAQNADQKLPIASLSKLMTLY 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDI 119
+V ++ + T + I KN + S T T+ +V S+N
Sbjct: 75 LVERAIEHGQIKWTDAVPIRKNVRKMATSATLSVMPMPAKETFTVRELFAATLVGSSNSG 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ----------------HGH 163
A+A+ E + + KF++ MN + L F++A G+ +
Sbjct: 135 AIALGEYVAGSNDKFIKLMNQQASKWHL-DASFISASGLDNTDLKNYDLKIKGTSDQDQN 193
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG------ADGMK 217
+AR + ++ + +P + + ++I P + + DG+K
Sbjct: 194 LVSARAVTTIAQHLIDAYPDVIQVANQRSVKIHKYTVPTSVEILKGAEYYDPRVPVDGLK 253
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
TG+T +G +VA+ Q +IA LG + T N +L K
Sbjct: 254 TGYTNQAGACLVATYRQNGHRMIATTLGGAWQFTANNNLRLML-----------KTTEQY 302
Query: 278 KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
K ++++ ++P +V K K+ +
Sbjct: 303 KQVVPKSINYQIPGTQTKVRLVTKYNSKLWVNSKQPITQTKI 344
>gi|75760329|ref|ZP_00740377.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218900160|ref|YP_002448571.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
G9842]
gi|228903511|ref|ZP_04067635.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
4222]
gi|74492183|gb|EAO55351.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|218545764|gb|ACK98158.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
G9842]
gi|228856132|gb|EEN00668.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
4222]
Length = 301
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 37 FTGMIFFSYAQRQQAVRADQPKITGQYGVTIDADTGEILYGKREDERSYPASIAKMMTTL 96
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 97 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 151
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 152 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYDIAIITKEALKYP 211
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 212 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 271
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 272 RVINVVL-SSTRAQLYPDTKKMAHYAFQQ 299
>gi|325200563|gb|ADY96018.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis H44/76]
Length = 272
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 8 IEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 67
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + + S G+ +T L L ++ S N A
Sbjct: 68 VVLDA----NLDMNETVTITPDEIDRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 123
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ + F G+ + +TA+D++++
Sbjct: 124 LGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 182
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 183 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 242
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 243 VTIVLLNSPTSATRVNDARKIESW 266
>gi|253682534|ref|ZP_04863331.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
str. 1873]
gi|253562246|gb|EES91698.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum D
str. 1873]
Length = 444
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 79/371 (21%), Positives = 129/371 (34%), Gaps = 43/371 (11%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH-PWNPASLTKLMTAYVVF 66
I ++ S F A + ++D TG VI D P PAS TKL+TA ++
Sbjct: 14 IFLSFCSTAFATTLNAPSVVGKSAIVVDAKTGEVIYAKNVDTSPMYPASTTKLLTALLLA 73
Query: 67 SFLKEKKA-MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+ T + + K G M+ D+A+K L++ SANDIA IAE
Sbjct: 74 ENKQPTDILTYTDGASKQPEYTLRSFLKGKLKVGDKMSADDAMKGLLLHSANDIAYMIAE 133
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--HGHYTTARDMAILSWRIKTDFPQ 183
++ F + MNN K LGL+ THF+ +G+ HYT+A D++I+ +
Sbjct: 134 NVAGNVDNFAKMMNNKIKKLGLTHTHFVTPNGLDNGITNHYTSAYDLSIIGKAAYENEWV 193
Query: 184 YMHYFQIKGL------------------------EIKGKKYPNTNWAVGTFLGADGMKTG 219
K K N + G KTG
Sbjct: 194 RKTMSLKKDKIELTNGVLGYPENRNKLLGQTLDSNFNSKISINIKNVPVSNAICIGGKTG 253
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNK--------- 267
+T +G +VA + + LI V++ + + A +++ + K
Sbjct: 254 YTSKAGRCLVAMFNKDGRILIGVVMKSAYDKNDTYVFNDMAKIINWAYSEKQVPLYKANT 313
Query: 268 --TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+K F N + E+V E T+ + K
Sbjct: 314 ELKTLSIKYKPLKFFGPTKTINVPVRVKEDVTYYDNEFNKTETKTEFELPDIGIG-KLSK 372
Query: 326 ITLLKNKITKK 336
+ + K+
Sbjct: 373 NKSIGKLVLKQ 383
>gi|291087663|ref|ZP_06347077.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
gi|291074391|gb|EFE11755.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. M62/1]
Length = 341
Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 63/272 (23%), Positives = 109/272 (40%), Gaps = 24/272 (8%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ A A+ L + G V+ PAS+TK+MTA +
Sbjct: 71 LFASALCVVDGETKDAGTELTAEAGALFNITDGTVLYSKNVFEELYPASITKVMTAILAI 130
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+ L+ +T++++A S K G T+T++ L L++ S ND A AIA
Sbjct: 131 EEGE-----LSDEVTVTQDAVITEAGASLAGIKPGDTLTMEQLLYGLMIPSGNDAANAIA 185
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--------- 175
+ + + F + MN ++ LG + THF N +G+ HYTTA D+ ++
Sbjct: 186 VHMSGSLESFAERMNEKARELGATHTHFKNPNGLTDPEHYTTAYDLYLIFNEALKLPKFR 245
Query: 176 -----RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
T + + G Y N + G KTG T A+G+ ++
Sbjct: 246 EVIGADSYTASYRDADGNTVSKTWKVGNWYQNGEEKAPQGVTVLGGKTGTTQAAGYCLIM 305
Query: 231 SAIQG--DQSLIAVILGALDRNTRNKVSASLL 260
A + + I+V+L A +R +++
Sbjct: 306 -AERDESGREYISVVLKAENRQGLYDNMTNII 336
>gi|15676647|ref|NP_273791.1| penicillin-binding protein 4 [Neisseria meningitidis MC58]
gi|7225978|gb|AAF41162.1| penicillin-binding protein 4 [Neisseria meningitidis MC58]
gi|325140094|gb|EGC62623.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
meningitidis CU385]
Length = 312
Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 105/264 (39%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 48 IEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 107
Query: 64 VVFSFLKEKKAMLTTPITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + S G+ +T L L ++ S N A
Sbjct: 108 VVLDA----NLDMNETVTITPDEIDRIKGTGSRLAIGTALTRKKLLHLSLMSSENRATHA 163
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ + F G+ + +TA+D++++
Sbjct: 164 LGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 222
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 223 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 282
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 283 VTIVLLNSPTSATRVNDARKIESW 306
>gi|269213993|ref|ZP_05983348.2| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
cinerea ATCC 14685]
gi|269144751|gb|EEZ71169.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria
cinerea ATCC 14685]
Length = 316
Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 100/242 (41%), Gaps = 10/242 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SK 84
+++ TG ++ + D AS++KLM+A VV + ITI +
Sbjct: 74 LSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAMVVLDA----NLNMDETITITTD 129
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ S G+++T L L ++ S N A+ + FV MN +++
Sbjct: 130 EIDRIKGTGSRLAIGTSLTRKELLHLSLMSSENRATHALGRTYPGGMGAFVAAMNRKAQS 189
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK---GLEIKGKKYP 201
LG+ ++ F G+ + + +TA+D++++ ++ + + Y
Sbjct: 190 LGMYSSRFYEPTGL-NYQNVSTAKDLSLMVNAAVQYPQIRINSTSNHAAVQTKNGQQNYK 248
Query: 202 NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N+N V + + KTG+ +G ++V A +Q + ++L + TR + +
Sbjct: 249 NSNALVREGMWNIELQKTGYIREAGRSMVVRANIQNQPVTIILLNSPTSATRVNDARKIE 308
Query: 261 SM 262
S
Sbjct: 309 SW 310
>gi|289806971|ref|ZP_06537600.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 177
Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 6/172 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 6 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 65
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPS------NSTFKKGSTMTLDNALKLLIVKSAND 118
V LK K LT +T+ K+A K G +++ + K +I++S ND
Sbjct: 66 VGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVSVADLNKGIIIQSGND 125
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+A+ + +++ F+ MN +K LGL+ T F HG+ G ++TARDM
Sbjct: 126 ACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQFSTARDM 177
>gi|145588924|ref|YP_001155521.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
gi|145047330|gb|ABP33957.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 342
Score = 115 bits (287), Expect = 9e-24, Method: Composition-based stats.
Identities = 54/241 (22%), Positives = 98/241 (40%), Gaps = 8/241 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ K +++ +T V E P AS+TKLMTA VV L I I++
Sbjct: 92 SLKSSVAMVVNQDTKEVYFEKNPSVSLPIASITKLMTAMVVLDSK----LPLNETIVINE 147
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ G+ ++ ++AL L ++ S N A + + FV MN +K
Sbjct: 148 QDVYIYKHSRLAG-GTALSREDALHLALMSSENRAAYTLGRNYPGGIPAFVDAMNRKAKE 206
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ--IKGLEIKGKKYPN 202
LG+ +HF + G++ + +L+ + + + + + +K+ N
Sbjct: 207 LGMDHSHFADPTGLMSENVSSAEDLTRMLNAAYQYKLIREFSTWPDLTMVIANRPQKFLN 266
Query: 203 TNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
TN V + G KTGF A+G +V A + L+ V L ++ +R + +
Sbjct: 267 TNRLVRSGDMDIGLQKTGFINAAGKCLVMQARVNNTPLLLVFLDSVGTQSRFADAVRVRD 326
Query: 262 M 262
Sbjct: 327 W 327
>gi|319410119|emb|CBY90455.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase;
DD-peptidase; DD-carboxypeptidase) [Neisseria
meningitidis WUE 2594]
Length = 316
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 105/264 (39%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 52 IEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 111
Query: 64 VVFSFLKEKKAMLTTPITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + S G+ +T L L ++ S N A
Sbjct: 112 VVLDA----NLDMNETVTITPDEIDRIKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 167
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ + F G+ + +TA+D++++
Sbjct: 168 LGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 226
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 227 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 286
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 287 VTIVLLNSPTSATRVNDARKIESW 310
>gi|91774582|ref|YP_544338.1| murein-DD-endopeptidase [Methylobacillus flagellatus KT]
gi|91708569|gb|ABE48497.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Methylobacillus flagellatus KT]
Length = 336
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 18/273 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
R I + + ++ P + E +++ +G V+ D ASLT
Sbjct: 59 RIISTIRSNSAVATASPSVFKDEDAGLKLASSKAMIVNQESGEVLFAKGTDIAAPIASLT 118
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSA 116
KLMTA VV + + + I++ + + S G+T+T L+L ++ S
Sbjct: 119 KLMTAMVVLDAQQ----DMNEKLRITREDIDTLKGTGSRMPIGATLTRAEMLQLALMASE 174
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
N A A+ FV MN + LG+ + F + G+ + +TA D+ +
Sbjct: 175 NRAASALGRHYPGGLNAFVAAMNAKALQLGMLHSRFADPTGL-NSANVSTAEDLVKMVR- 232
Query: 177 IKTDFPQYMHYFQIKGLEIKGK------KYPNTNWAVGTFLGADG-MKTGFTCASGFNIV 229
+P+ H + Y N+N V G KTG+ +G +V
Sbjct: 233 AAYQYPEIRHVSTTTAYAVPVNGARAPLHYVNSNVLVRNSDWVIGLSKTGYINEAGRCLV 292
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A G Q LI V+L + +N R + +
Sbjct: 293 MQAEVGGQPLIIVLLDSFSKNARVGDAQKIRKW 325
>gi|256827158|ref|YP_003151117.1| D-alanyl-D-alanine carboxypeptidase [Cryptobacterium curtum DSM
15641]
gi|256583301|gb|ACU94435.1| D-alanyl-D-alanine carboxypeptidase [Cryptobacterium curtum DSM
15641]
Length = 475
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 64/269 (23%), Positives = 104/269 (38%), Gaps = 32/269 (11%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++ + G E D + AS+TK+MTA L T IT+S
Sbjct: 67 PNIDAEHAIVV-GSDGTTYFERDADTRVHIASITKVMTAVTAID-----SVPLDTTITVS 120
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE------------ 131
A+ S + ++G TM L ALK L+ S ND A AIAES+
Sbjct: 121 SQAARIGESTAALQEGDTMPLSEALKALLWPSGNDAAWAIAESIGGMMLTSSNKDASDSS 180
Query: 132 ---KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ FV MN S +LG++ + + N HG+ A ++
Sbjct: 181 ACVQAFVDAMNAKSADLGMNDSIWSNPHGLDDGSWSGDFGSTARDISKLIEYAMSKDAIR 240
Query: 189 QIKGLEIKGKK-----------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
I + K +T+ +G++ G G+KTGFT ++G + D
Sbjct: 241 SITSTDGGTCKVLRNGEQVSLSLDSTDELLGSYEGTIGVKTGFTDSAGECFAGAVETSDI 300
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+L +V+L + R + +L F +
Sbjct: 301 TLYSVVLDSTSEKQRFTDTRTLWDWVFNH 329
>gi|329910749|ref|ZP_08275375.1| Penicillin-binding protein precursor
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Oxalobacteraceae bacterium IMCC9480]
gi|327546085|gb|EGF31152.1| Penicillin-binding protein precursor
(D-alanyl-D-alanine-endopeptidase) (DD-endopeptidase)
[Oxalobacteraceae bacterium IMCC9480]
Length = 351
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 8/244 (3%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
A K ++D + V+ E + AS+TKLMT+ VV + + I +
Sbjct: 86 ALDLKSNVALVMDQSNSKVLFEKNSNVALPIASITKLMTSMVVVESNQ----NMDEMIEV 141
Query: 83 -SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
S + S+S + GS ++ N L + ++ S N A A+ + FV MN
Sbjct: 142 TSDDIDREKNSSSRLRVGSILSRSNMLHIALMSSENRAASALGRNYPGGLPAFVGAMNAK 201
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK--K 199
+K+LG++ T ++++ G+ H + ++ + ++ +
Sbjct: 202 AKSLGMNDTRYVDSTGLSSHNVASAQDLAKLVIAARQHQIIGQYSTDTKYVVKPGSGALQ 261
Query: 200 YPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
Y N+N VG D KTG+ +G +V + ++ V L + + +R +
Sbjct: 262 YSNSNHLVGNPAWDIDLQKTGYINEAGRCMVMLTNIEGRPIVMVFLDSKGKQSRTADAGR 321
Query: 259 LLSM 262
+
Sbjct: 322 IRKW 325
>gi|217969517|ref|YP_002354751.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thauera sp.
MZ1T]
gi|217506844|gb|ACK53855.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Thauera sp.
MZ1T]
Length = 388
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 8/243 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ +++ TG V+ E AS+TKLMTA VV L+ PI I+
Sbjct: 132 PVLASNAFYVINQRTGEVLLERNATEVLPIASITKLMTAMVVLDAG----LSLSEPIEIN 187
Query: 84 KNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ + S G+T++ + L+L ++ S N A ++A E FV MN +
Sbjct: 188 DADIDQLKGTGSRLALGTTLSREEMLQLALMSSENRAASSLARHYPGGEAAFVDAMNVKA 247
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP- 201
+ LGL T F ++ G+ + +++ + + + + G+
Sbjct: 248 RLLGLWNTRFHDSTGLNPANVSSPRDLAKMVAASASYPLIREFSTAHERYVPVHGRMLRF 307
Query: 202 -NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN V + KTG+ +G +V Q ++ V++ + R TR + +
Sbjct: 308 GNTNSLVRSPEWTISVSKTGYISEAGRCLVMQTWLHQQPVVMVLMDSSGRYTRTADAKRV 367
Query: 260 LSM 262
Sbjct: 368 RKW 370
>gi|225018364|ref|ZP_03707556.1| hypothetical protein CLOSTMETH_02311 [Clostridium methylpentosum
DSM 5476]
gi|224948861|gb|EEG30070.1| hypothetical protein CLOSTMETH_02311 [Clostridium methylpentosum
DSM 5476]
Length = 304
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 57/264 (21%), Positives = 102/264 (38%), Gaps = 20/264 (7%)
Query: 5 LVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
L ++ + + + P + A L+D +G V+ E + PAS
Sbjct: 20 LALLFCVVHAFVLPKIQQTRTAGTQAEAVQLYSRCAILMDVQSGEVLLEKNSEKRAYPAS 79
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
LTK+MTA + + + I + S + F G + L + + ++ S
Sbjct: 80 LTKIMTALIAIEKNSDLNKSVVLDSGIFERLQRENASLAGFAPGEQVRLIDLIYGTLLPS 139
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
+ AV++AE ++K+F++ MN + L L T + N G+ TTA D+A L
Sbjct: 140 GAEAAVSLAEQTAGSQKEFLKLMNQKGRELKLKRTRYSNVTGLHAKDQITTAADIARLLR 199
Query: 176 RIKTDF---PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG--------ADGMKTGFTCAS 224
+ ++ + + + + +G G KTGFT +
Sbjct: 200 YALQNPTFREVFLSQSYTVPPTNRHSDGFTMHSTLFSRMGDASLEKGEILGGKTGFTDQA 259
Query: 225 GFNIVASAIQGDQSLIAVILGALD 248
G + + A D+ LI V L A
Sbjct: 260 GLCLASLAKYQDRELILVTLDADG 283
>gi|229026472|ref|ZP_04182829.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
gi|228734935|gb|EEL85573.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
Length = 279
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAHRQQAVRADQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ I + K N A G K+G + + +V + +
Sbjct: 190 IVLEYMNSIHTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRTQLYPDTKKMAHYAFKQ 277
>gi|167619401|ref|ZP_02388032.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis Bt4]
Length = 364
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 102/248 (41%), Gaps = 10/248 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D NT + + AS+TKLMTA VV +
Sbjct: 103 TPDSLALRSSVAYVVDQNTAEPLFDKNSRAVVPIASITKLMTAMVVLDSKAPLTEQIDVT 162
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 163 D---EDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRTAFIAAMN 219
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+K+LG++ THF N+ G+ + ++ARD+ + +P + + E+ K
Sbjct: 220 AKAKSLGMNDTHFENSTGL-SSQNVSSARDLVKM-VNAAYQYPLIRKFSTDRSYEVNTGK 277
Query: 200 ----YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 278 RMLAYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRFA 337
Query: 255 VSASLLSM 262
++ + +
Sbjct: 338 DASRVRNW 345
>gi|121634547|ref|YP_974792.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis
FAM18]
gi|120866253|emb|CAM09994.1| putative D-alanyl-D-alanine-endopeptidase [Neisseria meningitidis
FAM18]
Length = 316
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 52 IEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 111
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + + S G+ +T L L ++ S N A
Sbjct: 112 VVLDA----NLDMNETVTITPDEIDRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 167
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ + F G+ + +TA+D++++
Sbjct: 168 LGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 226
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 227 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 286
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 287 VTIVLLNSPTSATRVNDARKIESW 310
>gi|189219530|ref|YP_001940171.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum
V4]
gi|189186388|gb|ACD83573.1| D-alanyl-D-alanine carboxypeptidase [Methylacidiphilum infernorum
V4]
Length = 279
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 59/241 (24%), Positives = 97/241 (40%), Gaps = 12/241 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + D++ + D P+ PAS TK+MTA + + K + T
Sbjct: 37 NLQARAALVWDSDQKKDLFSRDADSPYYPASTTKVMTALIAYEKTKLE----GTVSIQPS 92
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ F G ++ + + L++ S+N+ A+A+A C T FV MN +K+
Sbjct: 93 DLGLTEYPVVRFFPGEKYSVKSLVYALLLPSSNEAAMALARQSCGTVMSFVDEMNKKAKS 152
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRI-----KTDFPQYMHYFQIKGLEIKGKK 199
LG + THF N HG+ GH T+A D+ + Y +
Sbjct: 153 LGCNHTHFQNPHGISYPGHMTSANDLRKIFEAFLAVPDLVKIISSPSYELATLDGKPVQY 212
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN + + G KTG+T S V + + LI VIL + ++ + L
Sbjct: 213 LMNTNKLLDLYQGMTAGKTGWTPESRNTFVGMFQRQGKKLIVVILDSPNK---WLDALIL 269
Query: 260 L 260
L
Sbjct: 270 L 270
>gi|116332941|ref|YP_794468.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
gi|116098288|gb|ABJ63437.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
Length = 423
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 54/273 (19%), Positives = 105/273 (38%), Gaps = 30/273 (10%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ ++D +G V+ + + + ASL+KL+T Y+ + + +
Sbjct: 26 TASAAATKTVSKVAARAAYVMDAQSGQVLYQQNANKKYPIASLSKLLTVYLTVKAINDGQ 85
Query: 74 AMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
T + +S++ + Y S+ KKG + T+ + ++ S+N A A+ E +
Sbjct: 86 IKWTDNVPMSQDLLKLSHSYTYSSLRMKKGESFTVRQLVAAAMIASSNSAATALGEYVAG 145
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----------------HYTTARDMAIL 173
+ KF+Q MN S++ G+ HF+++ G+ + +A+ + ++
Sbjct: 146 SNAKFIQLMNQQSRDWGI-DAHFISSSGLDNTDLKDYHLVLAGTGKKEENLVSAKAITVV 204
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTGFTCASGFN 227
+ + P I G K N N DG+KTG+T +
Sbjct: 205 AQHLLAADPTITAVASKTQATINGTKIYNENSCLPGKSQYKKASHIDGLKTGYTENAKLC 264
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
A+ Q +IA ILG L+
Sbjct: 265 FTATYTVNGQRMIATILGGDTT---FSAMNKLI 294
>gi|332284463|ref|YP_004416374.1| putative penicillin-binding protein precursor [Pusillimonas sp.
T7-7]
gi|330428416|gb|AEC19750.1| putative penicillin-binding protein precursor [Pusillimonas sp.
T7-7]
Length = 355
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 10/248 (4%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
L+ T + + D ++ V+ + D AS++KLMTA VV +
Sbjct: 99 LAPLTNLATLRAEVAFVQDLDSLDVLYDKNGDEVRPIASISKLMTALVVAEAG----LAM 154
Query: 77 TTPITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+TIS + + + + ++ + L L ++ S N A A+ FV
Sbjct: 155 DEMLTISDADVDRLRYSRSRLPVGTELSRADMLHLALMSSENRAAHALGRYYPGGMPAFV 214
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTT---ARDMAILSWRIKTDFPQYMHYFQIKG 192
+ MN+ ++ LG+ T F+ G+ T+ + + + +++
Sbjct: 215 RAMNDKARALGMRNTRFVEPTGLSSDNVSTSRDLVKLLRATTEHKLIHRYTTDDKYKVTV 274
Query: 193 LEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ Y NTN VG KTGF +G +V + + V+L + ++
Sbjct: 275 GRGRQLVYNNTNRLVGNSKWDIKVSKTGFINEAGECLVMLTRIDQRDVAIVLLNS-TNHS 333
Query: 252 RNKVSASL 259
R + L
Sbjct: 334 RIGDAVRL 341
>gi|91788192|ref|YP_549144.1| murein-DD-endopeptidase [Polaromonas sp. JS666]
gi|91697417|gb|ABE44246.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Polaromonas sp. JS666]
Length = 353
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 10/245 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
K ++D +T V+ ASLTKLMT ++ + IT+
Sbjct: 92 PLELKSSVALVIDQDTREVLFSKNDHAVLPIASLTKLMTGVIISGAK----LPMDEMITV 147
Query: 83 SKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+++ + S+S + G+T+T L L ++ S N A A+ + FV MN
Sbjct: 148 TQDDVDTEKGSSSRLRVGTTLTRGELLHLALMSSENRAAHALGRTYPGGMPTFVNLMNAK 207
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---KGK 198
+K LG++ T ++ G+ ++A+D+A L D +
Sbjct: 208 AKMLGMNDTSYVEPTGLSSRNQ-SSAQDLATLVNAAHGDPVLRELSTSTGYQVAVGKRTL 266
Query: 199 KYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+Y NTN V G KTG+ +G +V + LI V L + + +R +
Sbjct: 267 QYNNTNRLVKNPDWDIGLQKTGYISEAGQCLVMQTKIAGRKLIMVFLDSAGKLSRLGDAE 326
Query: 258 SLLSM 262
+
Sbjct: 327 RVRRW 331
>gi|332530569|ref|ZP_08406506.1| murein-DD-endopeptidase [Hylemonella gracilis ATCC 19624]
gi|332039975|gb|EGI76364.1| murein-DD-endopeptidase [Hylemonella gracilis ATCC 19624]
Length = 346
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 97/247 (39%), Gaps = 8/247 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ + + ++D +T V+ + ASLTKLMT ++ L P
Sbjct: 84 VNDPLSLRSSVAYVIDQDTQEVLFSKNEEAVLPIASLTKLMTTLLISEAE----LPLDEP 139
Query: 80 ITISKNASEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
ITI+++ + + + + G+ +T L L ++ S N A A+ + FV M
Sbjct: 140 ITITQDDVDTEKYSVSRLRVGTVLTRGELLHLALMASENRAANALGRTYPGGLSIFVTMM 199
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG+ T ++ G+ + ++ + + + + +
Sbjct: 200 NAKAQLLGMQDTRYVEPTGLSSRNQSSARDLALLVDAASADPMLREFSTTRAYQVAVGQR 259
Query: 199 KYP--NTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K NTN V G KTG+ +G +V A + LI V L ++ + +R
Sbjct: 260 KMVFANTNRLVLNQRWDIGLQKTGYISEAGQCLVMQATVAGRKLIMVFLDSVGKLSRLGD 319
Query: 256 SASLLSM 262
+ +
Sbjct: 320 AERVRRW 326
>gi|114562029|ref|YP_749542.1| D-alanyl-D-alanine endopeptidase [Shewanella frigidimarina NCIMB
400]
gi|114333322|gb|ABI70704.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Shewanella frigidimarina NCIMB 400]
Length = 302
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/277 (21%), Positives = 105/277 (37%), Gaps = 18/277 (6%)
Query: 1 MR-QFLVIIAMAMLSNIFPFLSIAE---------TNKLPYYTLLDTNTGHVIAENYPDHP 50
M+ +FL A+ +++ +S A L+D T V+ + P+ P
Sbjct: 1 MKFRFLFACALLCSTSLSSPMSFAAQAVQNKPQQELASASAMLVDLTTNEVLYSSNPNQP 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
AS+TKLM A V ++ IT S + GS +T + L L
Sbjct: 61 VPIASVTKLMAAMVTLDAKLALDEKISVKITDSPVMRNIYSRV---RLGSVVTRETMLLL 117
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
++ S N A ++A + K FV+ MN+ + LG+S T ++ G+ + +
Sbjct: 118 TLMSSENRAATSLAHNYPGGFKAFVRAMNDKATALGMSQTRYVEPTGLSPDNVSSANDLI 177
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKY----PNTNWAVGTFLG-ADGMKTGFTCASG 225
+L + K + + +Y NTN V KTGFT +G
Sbjct: 178 LLLKASQTYPLLGKLSSTTKKHVNFESPRYALDFQNTNKLVFKNNWNIALTKTGFTNKAG 237
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+V + + V+L + + T + L +
Sbjct: 238 HCLVMLTEMNKRKVAFVVLDSFGKYTHMADANRLKNW 274
>gi|255066285|ref|ZP_05318140.1| penicilin-binding protein [Neisseria sicca ATCC 29256]
gi|255049495|gb|EET44959.1| penicilin-binding protein [Neisseria sicca ATCC 29256]
Length = 313
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/246 (21%), Positives = 94/246 (38%), Gaps = 10/246 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ + TG ++ + D AS++KLM+A VV + + IT
Sbjct: 67 AGPLLTSQSALIFNNKTGEILYQKNADRVMPIASISKLMSAMVVLDA----RLDMNERIT 122
Query: 82 I-SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I S + S G+T+T L L ++ S N A+ + FV MN
Sbjct: 123 ITSDEIDRLKGTGSRLAVGTTLTRGELLHLSLMSSENRATHALGRTYPGGMSAFVAAMNA 182
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---KG 197
+++LG+ ++ F G+ + +TA D+ + + G
Sbjct: 183 KAQSLGMHSSRFYEPTGL-NFQNVSTANDLNRMVAAASKYPLIRKNTTSNYGSVWTANGR 241
Query: 198 KKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ Y N+N V + KTG+ +G ++V A +Q + V+L + TR +
Sbjct: 242 QNYKNSNALVREGSWNIELQKTGYIREAGRSMVVKANVQNQPITIVLLNSPTSTTRVNDA 301
Query: 257 ASLLSM 262
+ S
Sbjct: 302 RKIESW 307
>gi|326942829|gb|AEA18725.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 280
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D TG ++ D PAS+ K+MT
Sbjct: 16 FTGMIFFSYAQRQQAVRADQPNITGQYGVTIDAKTGEILYGKREDERSYPASIAKMMTTL 75
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 76 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 130
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 131 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYDIAIITKEALKYP 190
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 191 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 250
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 251 RVINVVL-SSTRAQLYPDTKKMAHYAFQQ 278
>gi|297537475|ref|YP_003673244.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera
sp. 301]
gi|297256822|gb|ADI28667.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera
sp. 301]
Length = 343
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/259 (20%), Positives = 97/259 (37%), Gaps = 10/259 (3%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
++M S +++ TG +I + AS+TKLMTA V+
Sbjct: 74 VSMSVPRAYDGSGPLELASSKALVINQLTGEIIYAKNTNQSTPIASVTKLMTAMVMLDA- 132
Query: 70 KEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+ + I +Y ++S G+ +T L+L ++ S N A A+A +
Sbjct: 133 ---HLPMDDLLFIGDEDVDYLKRTHSRLNVGTQLTRGELLQLALMSSENRAASALARNYP 189
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS----WRIKTDFPQY 184
F+ MN ++ LG+ +T F +A G+ + T + +++ +
Sbjct: 190 GGIGAFMVAMNRKAEVLGMKSTRFYDATGLDSNNVSTAEDLVKMVNAAYHYPEIRQVTTT 249
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ NTN V G KTGF +G +V A Q +I V+
Sbjct: 250 ASQEITLYGRENPINFVNTNSLVRGSDWVIGLSKTGFINEAGRCLVMQAEISGQPMIIVL 309
Query: 244 LGALDRNTRNKVSASLLSM 262
L + + +R + +
Sbjct: 310 LDSAGKQSRIGDANRIRKW 328
>gi|167033128|ref|YP_001668359.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida GB-1]
gi|166859616|gb|ABY98023.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas
putida GB-1]
Length = 308
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 8/242 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L+D N+ + ++ D AS+TKLMTA VV MLT I +
Sbjct: 41 LASGSALLIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLDAKLPMDEMLTMTIANNPE 100
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + GS + L + ++ S N A ++A + F++ MN +++L
Sbjct: 101 ---MKGVYSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSL 157
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---- 201
G++ T ++ G+ T +L K + + K + + Y
Sbjct: 158 GMAHTRYVEPTGLSTQNVSTARDLAKLLMASRKYPMLSELSTTREKTVAFRKPNYTLGFR 217
Query: 202 -NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
+ + KTGFT +G +V ++ + VIL A + T ++ +
Sbjct: 218 NTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYTHFADASRMR 277
Query: 261 SM 262
Sbjct: 278 QW 279
>gi|298369173|ref|ZP_06980491.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria sp.
oral taxon 014 str. F0314]
gi|298283176|gb|EFI24663.1| D-alanyl-D-alanine carboxypeptidase family protein [Neisseria sp.
oral taxon 014 str. F0314]
Length = 311
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 98/246 (39%), Gaps = 10/246 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+++ TG V+ + + AS++KLM+A V+ + +T
Sbjct: 65 AGPLLSSQSALIMNNKTGEVLYQKNANRVMPIASISKLMSAIVLLDAD----LNMNELVT 120
Query: 82 ISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I+ + + S G+++ L L ++ S N A+A + FV MN
Sbjct: 121 ITPEEIDRLKGTGSRLSIGTSLPRKELLHLSLMSSENRATHALARTYPGGINAFVAAMNA 180
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE---IKG 197
+++LG+S + F G+ + + +TA D++ L + G
Sbjct: 181 KAQSLGMSNSRFYEPTGL-DYRNVSTAHDLSRLVAAASKYPLIRRNSTSNYGAVSTASGS 239
Query: 198 KKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
++Y N+N V + KTG+ +G ++V A +Q + V+L + TR +
Sbjct: 240 QRYKNSNALVREGGWNIELQKTGYIREAGRSMVVKANVQNQPITIVLLNSPSSTTRVNDA 299
Query: 257 ASLLSM 262
+ S
Sbjct: 300 RKIESW 305
>gi|26990499|ref|NP_745924.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida KT2440]
gi|24985474|gb|AAN69388.1|AE016575_6 D-alanyl-D-alanine-endopeptidase [Pseudomonas putida KT2440]
Length = 308
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 8/242 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L+D N+ + ++ D AS+TKLMTA VV MLT I +
Sbjct: 41 LASGSALLIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLDAKLPMDEMLTMTIANNPE 100
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + GS + L + ++ S N A ++A + F++ MN +++L
Sbjct: 101 ---MKGVYSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSL 157
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---- 201
G++ T ++ G+ T +L K + + K + + Y
Sbjct: 158 GMAHTRYVEPTGLSTQNVSTARDLAKLLMASRKYPMLSELSTTREKTVAFRKPNYTLGFR 217
Query: 202 -NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
+ + KTGFT +G +V ++ + VIL A + T ++ +
Sbjct: 218 NTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYTHFADASRMR 277
Query: 261 SM 262
Sbjct: 278 QW 279
>gi|116493443|ref|YP_805178.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus pentosaceus ATCC
25745]
gi|116103593|gb|ABJ68736.1| D-alanyl-D-alanine carboxypeptidase [Pediococcus pentosaceus ATCC
25745]
Length = 418
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 63/371 (16%), Positives = 132/371 (35%), Gaps = 46/371 (12%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAET-----------NKLPYYTLLDTNTGHVIAENYPD 48
M++ ++IA M+ F AE +D NTG ++ +
Sbjct: 1 MKKLYTMLIAFLMMMTSFAPALAAENNESVIEATTSNITAKSAIAVDENTGQILYSKDEN 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS++K++ AY++ +KE + ++I+K+ E ++ + +
Sbjct: 61 TVRPIASMSKIVAAYLIMKSVKEGQMHWNQKVSINKSLEEVSNNSELTNVPLSSNQTYTV 120
Query: 109 KLLIVKSANDIAV----AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------ 158
+ L+ S A ++ ++ T +KFV M +T K G+ NA G+
Sbjct: 121 RNLLDASLIYSANAAILSLGKAQAGTSEKFVNEMRSTVKKWGIKDAKLYNAAGLLESQVG 180
Query: 159 --------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTN-- 204
+ +A+DMAI+ + +FP+ ++ +I+ K N N
Sbjct: 181 SEKYPGTSGNIENEMSAKDMAIVISHVLKEFPEILNITKIQKTTFNTGKEELEITNHNEL 240
Query: 205 -WAVGTFL---GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
+ DG+KTG + +G + A+ +I+V+LG+ N R + ++
Sbjct: 241 LKGAEQYEAKYQIDGLKTGTSDKAGEDFSATGKIKGHRVISVVLGS-GENQRFTDTKTIW 299
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS----EEVCTTQKEIINYNTQ-MKEAKD 315
+ + + + + + + +K
Sbjct: 300 NALMTKLAVLSSNLKNQASVKINSAKVADVKLELTQPLDYWVPKGQSEKLHVNAIKLNDP 359
Query: 316 KESHFIDFEKI 326
K+ I K+
Sbjct: 360 KQKAPIKHSKV 370
>gi|319944125|ref|ZP_08018403.1| D-alanyl-D-alanine endopeptidase PbpG [Lautropia mirabilis ATCC
51599]
gi|319742619|gb|EFV95028.1| D-alanyl-D-alanine endopeptidase PbpG [Lautropia mirabilis ATCC
51599]
Length = 454
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 91/244 (37%), Gaps = 8/244 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D G ++ + ASLTKLMTA VV L
Sbjct: 209 IPDPLALRSSVALVVDPRNGKILYDKNSSAVLPIASLTKLMTAMVVLD----GGQPLDEK 264
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I I ++ S S G+ +T ++L ++ S N A A+A S FV
Sbjct: 265 IRIEAEDRDTERYSTSHLPVGTELTRAELMQLALMSSENRAAHALARSYPGGVTAFVAAA 324
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--IK 196
N ++ +G+ + F++ G+ T +++ + + +
Sbjct: 325 NRKAREIGMWDSVFLDPTGLSASNVSTARDLALLVARSARYPEIRRFSVASQLQVRTAYG 384
Query: 197 GKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ + TN VG KTGF +G +V A + +I V+L + R +R
Sbjct: 385 TRVFHTTNPLVGNQQWGLTVQKTGFINEAGNCVVMQARVNGRQMIIVLLDSQGRYSRVAD 444
Query: 256 SASL 259
+ +
Sbjct: 445 ANRI 448
>gi|148547200|ref|YP_001267302.1| D-alanyl-D-alanine endopeptidase [Pseudomonas putida F1]
gi|148511258|gb|ABQ78118.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas
putida F1]
Length = 308
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 8/242 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L+D N+ + ++ D AS+TKLMTA VV MLT I +
Sbjct: 41 LASGSALLIDLNSNQELYSSHADRVVPIASVTKLMTAMVVLDAKLPMDEMLTMTIANNPE 100
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + GS + L + ++ S N A ++A + F++ MN +++L
Sbjct: 101 ---MKGVYSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSL 157
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---- 201
G++ T ++ G+ T +L K + + K + + Y
Sbjct: 158 GMAHTRYVEPTGLSTQNVSTARDLAKLLMASRKYPMLSELSTTREKTVAFRKPNYTLGFR 217
Query: 202 -NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
+ + KTGFT +G +V ++ + VIL A + T ++ +
Sbjct: 218 NTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYTHFADASRMR 277
Query: 261 SM 262
Sbjct: 278 QW 279
>gi|152980485|ref|YP_001353523.1| D-alanyl-D-alanine carboxyopeptidase [Janthinobacterium sp.
Marseille]
gi|151280562|gb|ABR88972.1| D-alanyl-D-alanine carboxyopeptidase [Janthinobacterium sp.
Marseille]
Length = 274
Score = 115 bits (286), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/255 (20%), Positives = 97/255 (38%), Gaps = 8/255 (3%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ +++ + A + ++D TG V+ E ASLTKLMTA VV
Sbjct: 5 ILFVVAITAASSAFATPVGSKHAIVIDEGTGQVVFEKNATDIVPIASLTKLMTAMVVLDA 64
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGS-TMTLDNALKLLIVKSANDIAVAIAESL 127
+ I+I+++ + +S+ + L+L ++ S N A A+A S
Sbjct: 65 KP----DMHERISITEDDVDTLKFSSSRVPVGAVFSRHELLELALMSSDNRAAHALARSY 120
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ F + + + L L T+ G+ + T + + K + +
Sbjct: 121 PGGLEHFKVAVRSKAHMLNLRRTNIEEPTGLSPYNTSTASDLAKLALAASKYPDIERITT 180
Query: 188 FQIKGLEIK--GKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+++ ++Y NTN VG KTG+T +G I+ + I V+L
Sbjct: 181 VSNDLIDVNGRMRQYHNTNRLVGDKNWTISLSKTGYTQEAGRCIIMRVHAAGRDAIMVLL 240
Query: 245 GALDRNTRNKVSASL 259
A R + L
Sbjct: 241 NARGNANRTADANYL 255
>gi|294670433|ref|ZP_06735315.1| hypothetical protein NEIELOOT_02152 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307897|gb|EFE49140.1| hypothetical protein NEIELOOT_02152 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 313
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/250 (21%), Positives = 101/250 (40%), Gaps = 11/250 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+++ TG V+ + + AS++KLM+A VV + +
Sbjct: 63 AAIAGPLLSSQAALIVNNRTGEVLYQKNMNRVMPIASISKLMSAMVVLDA----RLNMNE 118
Query: 79 PITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
ITI+++ + + S G+ +T L L ++ S N A+ + FV
Sbjct: 119 VITITEDEIDRLKGTGSRLSVGTQLTRAQLLHLSLMSSENRATHALGRTYPGGMSAFVAA 178
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-- 195
MN +++LG++ + F G+ + + +TA D+ L+ P + G
Sbjct: 179 MNAKAQSLGMTNSRFYEPTGL-DYRNVSTAWDLNKLAAAASNYAPITKNSTATYGSVYTS 237
Query: 196 --KGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ + Y NTN V + KTG+ SG ++V A G + + V+L + TR
Sbjct: 238 AGRQQNYKNTNALVREGTWDIELQKTGYIRESGRSMVVRARIGREPVTIVLLNSPTSTTR 297
Query: 253 NKVSASLLSM 262
+ + S
Sbjct: 298 VNDARKIQSW 307
>gi|238028027|ref|YP_002912258.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
glumae BGR1]
gi|237877221|gb|ACR29554.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
glumae BGR1]
Length = 379
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/248 (21%), Positives = 98/248 (39%), Gaps = 10/248 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S A + ++D T + + AS++KLMTA VV L
Sbjct: 118 TSDALALRSSVAYVVDQATSEPLFDKNSRAVVPIASISKLMTAMVVLDSKAP----LEEQ 173
Query: 80 ITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + S GS ++ ++ L + ++ S N A A++ F+ M
Sbjct: 174 IEVTDADRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAM 233
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +K LG++ THF N+ G+ + ++ARD+ +
Sbjct: 234 NAKAKALGMTDTHFENSTGLTSL-NVSSARDLVKMIDAAYQYPLIRRFSTDRTYTVFTGK 292
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN V G KTGF +G +V A + ++ V+L + + +R
Sbjct: 293 RSLVYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQATIHGRPIVMVLLDSFGKYSRTA 352
Query: 255 VSASLLSM 262
+A + +
Sbjct: 353 DAARVRNW 360
>gi|322389162|ref|ZP_08062723.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis ATCC 903]
gi|321144067|gb|EFX39484.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis ATCC 903]
Length = 452
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 68/357 (19%), Positives = 135/357 (37%), Gaps = 57/357 (15%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIA 43
++++L+ I + + P L+ A+ + ++D NTG+V+
Sbjct: 2 IKKYLIHICLLLSLLCQPILASADELVDMAQKMYPNDNVQAINRPHSSLIIDGNTGNVLW 61
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKK 98
++ D +PAS++KLMT Y++F + K T I + + +N+
Sbjct: 62 KDNIDEVRDPASMSKLMTLYLLFEDMANGKISKDTVIKATASDQAIGKIYEISNNNIVAG 121
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
+ ++ S + F++ MN +K LG++ T + N G
Sbjct: 122 VDYTIPELITMTVVPSSNVSTLMLANLMSNNDPDAFIERMNAKAKELGMTNTVWNNPSGA 181
Query: 159 V---------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ TTARD+ IL + +P ++Y + +K
Sbjct: 182 AISTLQGYYQVNNYPNDAANQTTARDLGILVYHFINQYPDILNYTNQAQVTVKKGTPYEE 241
Query: 204 NWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251
+ + G DG+KTG + FN +A+ +G+Q LIAVI+G D
Sbjct: 242 TFDTYNYSLPGAKYALKGVDGLKTGSSPRGAFNYIATIKRGNQRLIAVIMGVGDWADQDG 301
Query: 252 ---RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
R+ +L+ + + +K ++ + Q + + + + T K+
Sbjct: 302 EYYRHPFGNALIEKAYKDFGYKKLLDAGV-----QKIDGKTYTLEKPFYATVKKGAK 353
>gi|302544682|ref|ZP_07297024.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces hygroscopicus
ATCC 53653]
gi|302462300|gb|EFL25393.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces himastatinicus
ATCC 53653]
Length = 309
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 70/293 (23%), Positives = 124/293 (42%), Gaps = 30/293 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
MR+ + +A S + + A T +++ TG + + D +
Sbjct: 20 MRRLSALSVLAAGSVLASGAFVPAQAATAAAPTIAAKGGYVMNNGTGKDLYKKAADTRLS 79
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-----PPSNSTFKKGSTMTLDNA 107
S TK+MTA VV + L + +TI K S+Y S++ G +T+
Sbjct: 80 TGSTTKIMTARVVLAQP---NLNLNSKVTIQKAYSDYIVDNNWASSARLIVGDKVTVRQL 136
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQ------HMNNTSKNLGLSATHFMNAHGVVQH 161
L L++ S D A A+A+ + + MN+T+K+LGL T+F + G+
Sbjct: 137 LYGLMLPSGCDAAYALADKFGSGSTRAARVKSFIGKMNSTAKSLGLKNTNFDSFDGIGHG 196
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE--------IKGKKYPNTNWAVGTFLGA 213
+Y+T RD+ L+ K + + + NTN +GT+ GA
Sbjct: 197 KNYSTPRDLTKLASSAMKYSTFRSVVKTKKTTQKTVTKSGGYRNMTWENTNPLLGTYSGA 256
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
G+KTG + + +V +A + +++I +L + TR + LL+ GF
Sbjct: 257 IGVKTGSGPEAKYCLVFAATRSGKTVIGTVLASSSVATRTSDAKKLLNYGFKK 309
>gi|302552772|ref|ZP_07305114.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
DSM 40736]
gi|302470390|gb|EFL33483.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
DSM 40736]
Length = 277
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 66/280 (23%), Positives = 120/280 (42%), Gaps = 23/280 (8%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++A L+ + A +++ TG + D + S TK+MTA VV
Sbjct: 1 MLATGALTVAPAQAASAPAIAAKGGFVMNNATGKSLYTKAADTRRSTGSTTKIMTALVVL 60
Query: 67 SFLKEKKAMLTTPITISKNASEY-----PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
L + +T+ K S+Y SN+ G +T+ L L++ S D A
Sbjct: 61 KQS---NLNLDSKVTVQKAYSDYIVENNWASNAKLIVGDKVTVRQLLYGLMLPSGCDAAY 117
Query: 122 AIAESLCKTEKKFVQ------HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
A+A+ + + MN+T+K+LGLS THF + G+ + +Y+T RD+ ++
Sbjct: 118 ALADKFGSGSTRAARVKSFIGKMNSTAKSLGLSNTHFDSFDGIGKGSNYSTPRDLTKIAS 177
Query: 176 RIKTDFPQYM---------HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
+ G + NTN + ++ GA G+KTG + +
Sbjct: 178 AAMKNSTFRTVVKTKKYTAKTTTKSGGTRTMAPWENTNPLLSSYSGAIGVKTGSGPEAKY 237
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+V +A + +++I +L + + +TR + LL+ GF
Sbjct: 238 CLVFAATRNGKTVIGTVLASTNLDTRKSDATKLLNYGFTK 277
>gi|228942179|ref|ZP_04104719.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228975108|ref|ZP_04135667.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981748|ref|ZP_04142043.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
gi|228777860|gb|EEM26132.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
gi|228784629|gb|EEM32649.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228817513|gb|EEM63598.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 301
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D TG ++ D PAS+ K+MT
Sbjct: 37 FTGMIFFSYAQRQQAVRADQPNITGQYGVTIDAKTGEILYGKREDERSYPASIAKMMTTL 96
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 97 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 151
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 152 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADAIGNKVSPYDIAIITKEALKYP 211
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 212 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 271
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 272 RVINVVL-SSTRAQLYPDTKKMAHYAFQQ 299
>gi|294630405|ref|ZP_06708965.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
gi|292833738|gb|EFF92087.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
Length = 283
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 64/279 (22%), Positives = 115/279 (41%), Gaps = 22/279 (7%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++A L+ + A + +++ G + D + S TK+MTA VV
Sbjct: 6 VLATGALTAMPAQAVSAPSIVAKGGYVMNNANGSSLYTKAADTKLSTGSTTKIMTAKVVL 65
Query: 67 SFLKEKKAMLTTPITI----SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+K L +TI S + S + G +T+ L L++ S D A A
Sbjct: 66 ---SQKNLNLDAKVTIQKAYSDYVVKNNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYA 122
Query: 123 IAE------SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
+A+ ++ K F+ MN +K+L L THF + G+ +Y+T RD+ ++
Sbjct: 123 LADKYGTGSTMSARVKSFIGKMNTAAKDLKLKNTHFDSFDGIGNGKNYSTPRDLTKIASS 182
Query: 177 IKTDFPQYM---------HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ G + NTN + ++ GA G+KTG + +
Sbjct: 183 AMKNANFRAIVKTKSYTAKTVTKTGSTRTMATWTNTNTLLSSYKGAIGVKTGSGPEAKYC 242
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+V +A +G +++I +L + N R + LL+ GF
Sbjct: 243 LVFAATRGSKTVIGTVLASSSINQRATDATKLLNYGFAR 281
>gi|308180223|ref|YP_003924351.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|308045714|gb|ADN98257.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 412
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 63/342 (18%), Positives = 127/342 (37%), Gaps = 38/342 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + N+ + ++ +++ ++D +G V+ D ASL+KLMT Y
Sbjct: 15 LTATVSGVLSCNVAAHATSSKADEVKAAYVMDAKSGQVVYAQNADQKLPIASLSKLMTLY 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDI 119
+V ++ + T + I KN + S T T+ +V S+N
Sbjct: 75 LVERAIEHGQIKWTDAVPIRKNVRKMATSATLSVMPMPAKETFTVRELFAATLVGSSNSG 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ----------------HGH 163
A+A+ E + + KF++ MN + L F++A G+ +
Sbjct: 135 AIALGEYVAGSNDKFIKLMNQQAAKWHL-DASFISASGLDNTDLKNYDLKIKGTSDQDQN 193
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG------ADGMK 217
+AR + ++ + +P + + ++I P + + DG+K
Sbjct: 194 LVSARAVTTIAQHLIDAYPDVIQVANQRSVKIHKYTVPTSVEILKGAEYYDPRVPVDGLK 253
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
TG+T +G +VA+ Q +IA LG + T N +L K
Sbjct: 254 TGYTNQAGACLVATYRQNGHRMIATTLGGAWQFTANNNLRLML-----------KTTEQY 302
Query: 278 KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
K ++++ ++P +V K K+ +
Sbjct: 303 KQVVPKSINYQIPGTQTKVRLVTKYNSKLWVNSKQPMTQTKI 344
>gi|296876825|ref|ZP_06900873.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis ATCC 15912]
gi|296432327|gb|EFH18126.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis ATCC 15912]
Length = 449
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 68/357 (19%), Positives = 135/357 (37%), Gaps = 57/357 (15%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-----------------KLPYYTLLDTNTGHVIA 43
++++L+ I + + P L+ A+ + ++D NTG+V+
Sbjct: 2 IKKYLIHICLLLSLLCQPILASADELVDMAQKMYPNDNVQAINRPHSSLIIDGNTGNVLW 61
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKK 98
++ D +PAS++KLMT Y++F + K T I + + +N+
Sbjct: 62 KDNIDEVRDPASMSKLMTLYLLFEDMANGKISKDTVIKATASDQAIGKIYEISNNNIVAG 121
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
+ ++ S + F++ MN +K LG++ T + N G
Sbjct: 122 VDYTIPELITMTVVPSSNVSTLMLANLMSNNDPDAFIERMNAKAKELGMTNTVWNNPSGA 181
Query: 159 V---------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ TTARD+ IL + +P ++Y + +K
Sbjct: 182 AISTLQGYYQVNNYPNDAANQTTARDLGILVYHFINQYPDILNYTNQAQVTVKKGTPYEE 241
Query: 204 NWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251
+ + G DG+KTG + FN +A+ +G+Q LIAVI+G D
Sbjct: 242 TFDTYNYSLPGAKYALKGVDGLKTGSSPRGAFNYIATIKRGNQRLIAVIMGVGDWADQDG 301
Query: 252 ---RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
R+ +L+ + + +K ++ + Q + + + + T K+
Sbjct: 302 EYYRHPFGNALIEKAYKDFGYKKLLDAGV-----QKIDGKTYTLEKPFYATVKKGAK 353
>gi|218507214|ref|ZP_03505092.1| probable D-alanyl-D-alanine carboxypeptidase protein [Rhizobium
etli Brasil 5]
Length = 200
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 64/200 (32%), Positives = 99/200 (49%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + LS+ + A+ ++D +G V+ + D PASLTK+M
Sbjct: 1 MTKMTSRLRATALSSALLMGAFAQAEAGQASFVVDAQSGQVLEASNQDDLNYPASLTKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L + + +T+S+NA P G +TL A++ ++V SAND A
Sbjct: 61 TLYLAFEALHQGRLTWEQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
VAIAE L +E+ F + M + + LG+ T F N G+ TTARDMA L + D
Sbjct: 121 VAIAEQLGGSEQAFARAMTDKAHQLGMKDTVFKNPSGLPDPEQVTTARDMATLGVSLMRD 180
Query: 181 FPQYMHYFQIKGLEIKGKKY 200
FP+ F ++G + +G K
Sbjct: 181 FPEEFKLFSMRGFQFRGMKL 200
>gi|237809560|ref|YP_002894000.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tolumonas
auensis DSM 9187]
gi|237501821|gb|ACQ94414.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tolumonas
auensis DSM 9187]
Length = 413
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 11/255 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
N P S + +++ NTG ++ AS+TKLMTA VV K
Sbjct: 154 VNTIPMTSGSPFLDSNAALIMNANTGRMVYGKNAARRTPIASITKLMTAMVVLDA----K 209
Query: 74 AMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ PITI+ + S+S + G+T++ + + L ++ S N A ++A + +
Sbjct: 210 LSMDQPITITNADVDRVKRSSSRLEIGTTLSRYDTMWLALMSSENRAAHSLARTYPGGKG 269
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
F+ MN ++ LG+ T F ++ G+ + +TA D+A++ +
Sbjct: 270 AFIAAMNRKARALGMRNTVFYDSTGL-NKNNTSTAADLALMVQAAYRYPQIRQLSTSTEH 328
Query: 193 LEI----KGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
I + Y N+N V + KTG+ +G +V A ++ ++ V L A
Sbjct: 329 DIISASGRQLHYQNSNALVREGAWDIELSKTGYIKEAGRCLVMVADVQNKPMVMVFLNAG 388
Query: 248 DRNTRNKVSASLLSM 262
+ R + +L S
Sbjct: 389 APSGRINDARNLKSW 403
>gi|157370801|ref|YP_001478790.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
proteamaculans 568]
gi|157322565|gb|ABV41662.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Serratia
proteamaculans 568]
Length = 320
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 109/266 (40%), Gaps = 9/266 (3%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK-LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
R+F I+ + +L + + A +++ TG ++ + + ASLTKLM
Sbjct: 56 RRFGAILVLTLLFILPAAQAAAPLALYSKSVLVVNQRTGKILYQKQANRVQPIASLTKLM 115
Query: 61 TAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
TA V + L + ++ + ++S GST++ + L + ++ S N
Sbjct: 116 TAMVTLDSKRP----LGNRMMVTAADRDLLKKTHSRLTIGSTLSRRDMLHIALMSSENRA 171
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A A++ + K FV MN ++ +G+ F + G+ + + +++ +
Sbjct: 172 ASALSRNYPGGRKAFVAKMNQKARTIGMKHARFYDPTGLTPRNVASANDLLKMVNHAYRY 231
Query: 180 DFPQYMHYFQIKGLEIKGKK--YPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGD 236
+ + + + + Y ++N + KTGFT +G +V +
Sbjct: 232 QTIRRFSTDKQQIVRPGRGQLVYRSSNGLINNPTWKIQLQKTGFTDEAGHCLVMRTLIKG 291
Query: 237 QSLIAVILGALDRNTRNKVSASLLSM 262
Q ++ ++LG+ R K + L +
Sbjct: 292 QPVVIILLGSKQRYGHYKDAIRLKAW 317
>gi|313498269|gb|ADR59635.1| PbpG [Pseudomonas putida BIRD-1]
Length = 312
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/242 (20%), Positives = 91/242 (37%), Gaps = 8/242 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L+D N+ + ++ D AS+TKLMTA VV MLT I +
Sbjct: 45 LASGSALLIDLNSNKELYSSHADRVVPIASVTKLMTAMVVLDAKLPMDEMLTMTIANNPE 104
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + GS + L + ++ S N A ++A + F++ MN +++L
Sbjct: 105 ---MKGVYSRVRLGSQLDRRETLLITLMSSENRAANSLANAYPGGYPAFIKAMNAKARSL 161
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---- 201
G++ T ++ G+ T +L K + + K + + Y
Sbjct: 162 GMAHTRYVEPTGLSTQNVSTARDLAKLLMASRKYPMLSELSTTREKTVAFRKPNYTLGFR 221
Query: 202 -NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
+ + KTGFT +G +V ++ + VIL A + T ++ +
Sbjct: 222 NTDHLVNKSNWDIKLTKTGFTNEAGHCLVLLTRMDNRPVAMVILDAFGKYTHFADASRMR 281
Query: 261 SM 262
Sbjct: 282 QW 283
>gi|291544768|emb|CBL17877.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 18P13]
Length = 470
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/374 (14%), Positives = 129/374 (34%), Gaps = 42/374 (11%)
Query: 1 MRQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
+++ +++ + + + + L T+T V+ D
Sbjct: 7 IKKTAILLICCVTALHICLPGLRASAMFTPTFDLQSKAAILYSTDTREVLYAKNQDEKMM 66
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTP-----ITISKNASEYPPSNSTFKKGSTMTLDNA 107
P +L LMTA + ++ T + +G TL+
Sbjct: 67 PGALVNLMTALICVENNQDLAGTQVTVKGSLFDAFVDYSYPSDLRYGEIYRGDVFTLEEL 126
Query: 108 LKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
L +++ S+ + +V IA+ + + FV MN ++ +G+ THF N G TT
Sbjct: 127 LYAMLLTSSCEASVVIADEIGHGSVPGFVAMMNLKAEEIGMKNTHFTNPDGRYNEYQVTT 186
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW---------------AVGTFL 211
A DM ++ I+ + + + + + N + +
Sbjct: 187 AGDMLLMMQYIQEHASKVLEIARTASYSPQIRTQENHQNGTLTWSHANIMMDEESRFYYK 246
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL-------DRNTRNKVSASLLSMGF 264
GA G+KT G NI+ A + + +++ + + + +A++L F
Sbjct: 247 GAAGLKTATLQEYGRNIMVDAARDGHHYLVILMQSPIYNENKENTYYHLQDAAAVLDWAF 306
Query: 265 YNKTDRKKIN------YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
+ + ++ I + + + + EE+ + ++ + + ++S
Sbjct: 307 GHFNYEEILSLNEEIAEIPVENAKNENNYVILKPREELVMLWPDTVDRSVVQRIVVKEDS 366
Query: 319 HFIDFEKITLLKNK 332
+K +L +
Sbjct: 367 VKAPVQKGQVLGSI 380
>gi|160945058|ref|ZP_02092284.1| hypothetical protein FAEPRAM212_02576 [Faecalibacterium prausnitzii
M21/2]
gi|158442789|gb|EDP19794.1| hypothetical protein FAEPRAM212_02576 [Faecalibacterium prausnitzii
M21/2]
Length = 325
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 61/237 (25%), Positives = 96/237 (40%), Gaps = 12/237 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ LLD +G V+A+ D PASLTK+MT + + +T P I
Sbjct: 67 DTASRHAILLDAQSGRVLAQKRADERTAPASLTKMMTVLLAIETEPDLDKQVTLPEDIFP 126
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
S + F T+T+ + L ++ S + A+A+ + +E+ F MN +
Sbjct: 127 ALQTEKASMAGFVPDETVTVRDLLYGAMLPSGAECCEALAQLVSGSEENFAALMNQKAAE 186
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
LG+ THF NA G+ HY++A DMA L + + ++P
Sbjct: 187 LGMKNTHFTNATGLTDTEHYSSAADMAKLLQAALHNTTFRTIFTTKHYTTTATAQHPEGV 246
Query: 205 WAVGTFLG------------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
T LG +G KTG+T A+G + + A + I V L A
Sbjct: 247 SLTSTLLGKLDGTELPTGTQIEGGKTGYTAAAGLCLASLATVNGKEYILVTLAAPGD 303
>gi|254669736|emb|CBA03920.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria
meningitidis alpha153]
Length = 369
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 105/264 (39%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 105 IEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 164
Query: 64 VVFSFLKEKKAMLTTPITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + S G+ +T L L ++ S N A
Sbjct: 165 VVLDA----NLDMNETVTITPDEIDRIKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 220
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ + F G+ + +TA+D++++
Sbjct: 221 LGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 279
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 280 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 339
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 340 VTIVLLNSPTSATRVNDARKIESW 363
>gi|305679771|ref|ZP_07402581.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
matruchotii ATCC 14266]
gi|305660391|gb|EFM49888.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
matruchotii ATCC 14266]
Length = 489
Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 12/244 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + D ++G V+ P + PAS+ K++ A V + L +T+S
Sbjct: 162 PDITASAWLVWDLDSGAVLGTKDPHGRYRPASIIKVLLAMEVINN-----LDLNKVVTVS 216
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ S G T+ + L L+++S ND A A+A+ L E+ + +N +
Sbjct: 217 AESANQEGSAVGIGPGGKYTIRDLLHGLLLQSGNDAAHALAQELGGNEQALTR-VNALAH 275
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-----HYFQIKGLEIKGK 198
NLG + T+ + G+ G T+ARDMAI + Y + G
Sbjct: 276 NLGATDTYAASYSGLDAPGMSTSARDMAIFYHYAWKNPTFAQIVGTDEYKFPGYQDNPGW 335
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVSA 257
N N + G KTGFT + V + G++ + AVIL R + +
Sbjct: 336 PIGNDNGLLMNDPDGIGGKTGFTSDANHTFVGAKKVGNRRIAAVILDTTVDKGRPWQQAQ 395
Query: 258 SLLS 261
L+
Sbjct: 396 KLID 399
>gi|293607038|ref|ZP_06689381.1| penicillin-binding protein 7 [Achromobacter piechaudii ATCC 43553]
gi|292814528|gb|EFF73666.1| penicillin-binding protein 7 [Achromobacter piechaudii ATCC 43553]
Length = 399
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 93/243 (38%), Gaps = 8/243 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ A + + D T V+ + AS++KLMTA VV + +
Sbjct: 144 AEAAALRSSTAYVQDLETSTVLFAKNENVVRPIASISKLMTAVVVVDA----NLPMDEML 199
Query: 81 TISKNASEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
I+ + + ++ + G+ ++ + L L ++ S N A A+ FV MN
Sbjct: 200 EITDDDVDGLKHTTSRLRVGTKLSRGDMLHLALMSSENRAANALGRHYPGGLPAFVAAMN 259
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+++LG+++T F+ G+ + + +L + +EI +
Sbjct: 260 AKAQSLGMTSTRFIEPTGLSSNNVSSPHDLARLLRAASQRPLIHRYSTDTEYDVEINNRT 319
Query: 200 Y--PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
NTN V KTG+ +G +V A + L V+L + + +R +
Sbjct: 320 QTFRNTNLLVRKPDWDIKVSKTGYINEAGECLVMLARINGRDLAIVLLDSQGKLSRIGDA 379
Query: 257 ASL 259
+
Sbjct: 380 VRI 382
>gi|291557828|emb|CBL34945.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
Length = 734
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/301 (17%), Positives = 112/301 (37%), Gaps = 18/301 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++ + G ++ E +PA L K+M + + + + I
Sbjct: 13 PEINAQAAIVVTQHEGRILLEKNARMKLSPAFLIKIMASIIALEKCNPNDTVTVSDSVIK 72
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ ++ ++ + G +++ + + +++ SAND A+AE +C + KF M +K
Sbjct: 73 QISNWKGSASINLEAGEKISVLDLIYSMMLVSANDSLFALAEFICGSLDKFAAMMQEKAK 132
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG-----LEIKGK 198
++G + T A G Y+ A D+AI+ T+ K + +
Sbjct: 133 SIGAADTTVTTADGRFTAEQYSNAYDLAIICRYCMTNRMFRTIAATDKYTIPATNKNGSR 192
Query: 199 KYPNTN------WAVGTFLGADGMKTGFTCASGFNIVAS----AIQGDQSLIAVILGALD 248
NTN + A G+K+G+T S + S A + + ++A+ILGA +
Sbjct: 193 DLQNTNLLINSGNRRYRYETAIGIKSGYTARSKSCLACSALPPANKFGEEVLAIILGAEN 252
Query: 249 RNTR---NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
+ +LL F N ++ + V + E + + +
Sbjct: 253 TKQMKYVFYDAITLLDFTFNNYEALSGKKPEQQNSEAEKSITTVGKLCEILNAELRNAAD 312
Query: 306 Y 306
Sbjct: 313 V 313
>gi|225020583|ref|ZP_03709775.1| hypothetical protein CORMATOL_00590 [Corynebacterium matruchotii
ATCC 33806]
gi|224946529|gb|EEG27738.1| hypothetical protein CORMATOL_00590 [Corynebacterium matruchotii
ATCC 33806]
Length = 498
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 12/244 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + D ++G V+ P + PAS+ K++ A V + L +T+S
Sbjct: 171 PDITASAWLVWDLDSGAVLGTKDPHGRYRPASIIKVLLAMEVINN-----LDLNKVVTVS 225
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ S G T+ + L L+++S ND A A+A+ L E+ + +N +
Sbjct: 226 AESANQEGSAVGIGPGGKYTIRDLLHGLLLQSGNDAAHALAQELGGNEQALAR-VNALAH 284
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-----HYFQIKGLEIKGK 198
NLG + T+ + G+ G T+ARDMAI + Y + G
Sbjct: 285 NLGATDTYAASYSGLDAPGMSTSARDMAIFYHYAWKNPTFAQIVGTDEYKFPGYQDNPGW 344
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVSA 257
N N + G KTGFT + V + G++ + AVIL R + +
Sbjct: 345 PIGNDNGLLMNDPDGIGGKTGFTSDANHTFVGAKKVGNRRIAAVILDTTVDKGRPWQQAQ 404
Query: 258 SLLS 261
L+
Sbjct: 405 KLID 408
>gi|254804631|ref|YP_003082852.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria
meningitidis alpha14]
gi|254668173|emb|CBA04859.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria
meningitidis alpha14]
Length = 369
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/264 (20%), Positives = 106/264 (40%), Gaps = 14/264 (5%)
Query: 8 IAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
I + S I P + A T +++ TG ++ + D AS++KLM+A
Sbjct: 105 IEIFAESTIHPTNTQAITGGLILSSQSALVVNNKTGQILYQKNADRIMPIASISKLMSAM 164
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + +TI+ + + + S G+ +T L L ++ S N A
Sbjct: 165 VVLDA----NLDMNETVTITPDEIDRLKGTGSRLAIGTALTRKELLHLSLMSSENRATHA 220
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + FV MN +++LG+ + F G+ + +TA+D++++
Sbjct: 221 LGRTYPGGMGAFVAAMNRKAQSLGMYGSRFYEPTGL-NFQNVSTAKDLSLMVNAAAQYPQ 279
Query: 183 QYMHYFQIK---GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + Y N+N V + + KTG+ +G ++V A +Q
Sbjct: 280 IRTNSTSNYASVQTKNGQQNYKNSNALVREGMWNIELQKTGYIREAGRSMVVKANIQNQP 339
Query: 239 LIAVILGALDRNTRNKVSASLLSM 262
+ V+L + TR + + S
Sbjct: 340 VTIVLLNSPTSATRVNDARKIESW 363
>gi|33595888|ref|NP_883531.1| D-alanyl-D-alanine carboxypeptidase [Bordetella parapertussis
12822]
gi|33565967|emb|CAE36518.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella
parapertussis]
Length = 259
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/239 (20%), Positives = 96/239 (40%), Gaps = 10/239 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ + D T V+ + AS++KLMTA VV + I I+ +
Sbjct: 15 LRSSTAYVQDLETSTVLFAKNENVVRPIASISKLMTALVVVDA----NLPMDEMIEITDD 70
Query: 86 ASEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ ++ + G+ ++ + L L ++ S N A A+ + FV MN +++
Sbjct: 71 DVDTLKHTTSRLRVGTVLSRGDMLHLALMSSENRAAHALGRNYPGGMPAFVAAMNAKARS 130
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYP 201
LG+ THF+ G+ + ++ RD+A + + + + + + +
Sbjct: 131 LGMLNTHFVEPTGL-SSENVSSPRDLARMLRAASQRPLIHRYSTDTEYEVEINNRTQTFR 189
Query: 202 NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN V KTGF +G +V A + + V+L + + +R + +
Sbjct: 190 NTNLLVRKPDWDIKVSKTGFINEAGECLVMLARINGRDMAIVLLDSQGKLSRIGDAVRI 248
>gi|167750846|ref|ZP_02422973.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
gi|167656281|gb|EDS00411.1| hypothetical protein EUBSIR_01829 [Eubacterium siraeum DSM 15702]
Length = 734
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/301 (17%), Positives = 112/301 (37%), Gaps = 18/301 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++ + G ++ E +PA L K+M + + + + I
Sbjct: 13 PEINAQAAIVVTQHEGRILLEKNARMKLSPAFLIKIMASIIALEKCNPNDTVTVSDSVIK 72
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ ++ ++ + G +++ + + +++ SAND A+AE +C + KF M +K
Sbjct: 73 QISNWKGSASINLEAGEKISVLDLIYSMMLVSANDSLFALAEFICGSLDKFAAMMQEKAK 132
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG-----LEIKGK 198
++G + T A G Y+ A D+AI+ T+ K + +
Sbjct: 133 SIGAADTTVTTADGRFTAEQYSNAYDLAIICRYCMTNRMFRTIAATDKYTIPATNKNGSR 192
Query: 199 KYPNTN------WAVGTFLGADGMKTGFTCASGFNIVAS----AIQGDQSLIAVILGALD 248
NTN + A G+K+G+T S + S A + + ++A+ILGA +
Sbjct: 193 DLQNTNLLINSGNRRYRYETAIGIKSGYTARSKSCLACSALPPANKFGEEVLAIILGAEN 252
Query: 249 RNTR---NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
+ +LL F N ++ + V + E + + +
Sbjct: 253 TKQMKYVFYDAITLLDFTFNNYEALSGKKPEQQNSEAEKSITTVGKLCEILNAELRNAAD 312
Query: 306 Y 306
Sbjct: 313 V 313
>gi|253997566|ref|YP_003049630.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera
mobilis JLW8]
gi|253984245|gb|ACT49103.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylotenera
mobilis JLW8]
Length = 334
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 58/249 (23%), Positives = 100/249 (40%), Gaps = 12/249 (4%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ +L+ TG V+ + P AS+TKLMTA V+ + +
Sbjct: 76 TTPLKLASAKALVLNQQTGEVLFAKNTNLPTPIASVTKLMTAMVMLDA----HLPMDELL 131
Query: 81 TISKNASEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
IS +Y ++ G+T+T L+L ++ S N A A+ + FV+ MN
Sbjct: 132 NISDEDVDYLKHTTSRLSVGTTLTRGEMLQLALMASENRAASALGRNYPGGSYAFVKAMN 191
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS-----WRIKTDFPQYMHYFQIKGLE 194
+K LG++A+ F+++ G+ + +TA D+A + +
Sbjct: 192 QKAKLLGMNASRFVDSTGLDS-NNVSTAEDLAKMVDAAYHYAEIRQVTTLASQEITLYGR 250
Query: 195 IKGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ NTN V G KTGF +G +V A Q +I V+L + + TR
Sbjct: 251 RSPLSFVNTNALVRGGKWDIGLSKTGFINEAGRCLVMQAHISGQPVIIVLLDSAGKLTRI 310
Query: 254 KVSASLLSM 262
+ +
Sbjct: 311 GDANRIRKW 319
>gi|56477732|ref|YP_159321.1| D-alanyl-D-alanine carboxypeptidase [Aromatoleum aromaticum EbN1]
gi|56313775|emb|CAI08420.1| probable D-alanyl-D-alanine carboxypeptidase [Aromatoleum
aromaticum EbN1]
Length = 263
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 59/243 (24%), Positives = 103/243 (42%), Gaps = 8/243 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + +++ TG VI E D AS+TKLMTA VV L+ I I+
Sbjct: 7 PQLRSAAFVVVNQATGEVILEKKSDSVLPIASITKLMTAMVVLD----GGQSLSEEIVIT 62
Query: 84 KNA-SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
++ + S G+ +T + L L ++ S N A A+ S FV+ MN +
Sbjct: 63 EDDLDTIKGTGSRLALGTRLTREQLLHLALMSSENRAASALGRSYPGGIAAFVKAMNVKA 122
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP- 201
+ +GL T F ++ G+ + + ++S + +EI+G+ +
Sbjct: 123 RLVGLGDTRFSDSTGLDPTNVSSPRDLVRMVSAASTYPLIRRFSTSSEDHVEIRGRMHRF 182
Query: 202 -NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN V + D KTG+ +G +V A +Q +I V++ + R TR + +
Sbjct: 183 GNTNSLVRSPEWEIDVSKTGYIREAGRCLVMQARLLNQRVIIVLMDSEGRYTRTADAVRI 242
Query: 260 LSM 262
Sbjct: 243 KKW 245
>gi|320009813|gb|ADW04663.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
flavogriseus ATCC 33331]
Length = 299
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/264 (22%), Positives = 108/264 (40%), Gaps = 21/264 (7%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
T +++ T + D + S TK+MTA VV +K L +
Sbjct: 39 PPTPTITAKGGFVMNNGTAKTLYGKSADTRRSTGSTTKIMTAKVVL---AQKNLNLDAKV 95
Query: 81 TI----SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T+ S + S++ G +T+ L L++ S D A A+A+ + +
Sbjct: 96 TVQKAYSDYIVKNTASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGTGSTRAAR 155
Query: 137 ------HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL--------SWRIKTDFP 182
MN ++K+LGL THF + G+ +Y+T RD+ + ++R
Sbjct: 156 VKSFIGKMNASAKSLGLKNTHFDSFDGIGGGSNYSTPRDLTKIASSAMKNSTFRAIVKTK 215
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
K + + NTN +G++ G G+KTG + + +V +A + +++I
Sbjct: 216 STKQKVTTKTGGYRYMSWANTNAMLGSYSGMIGVKTGSGPTAKYCLVFAATRNGKTVIGT 275
Query: 243 ILGALDRNTRNKVSASLLSMGFYN 266
+L + TR + LL GF
Sbjct: 276 VLTSTSATTRTADAKKLLDYGFKK 299
>gi|34498608|ref|NP_902823.1| D-alanyl-D-alanine-endopeptidase [Chromobacterium violaceum ATCC
12472]
gi|34104462|gb|AAQ60820.1| D-alanyl-D-alanine-endopeptidase [Chromobacterium violaceum ATCC
12472]
Length = 289
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/281 (18%), Positives = 98/281 (34%), Gaps = 23/281 (8%)
Query: 1 MRQFL-VIIAMAMLSNIFPFLSI------------AETNKLPYYTLLDTNTGHVIAENYP 47
+++ ++++ A+ + A +L+ TG + E
Sbjct: 2 IKKIASLLVSAALAMPVLAGSPQGVLVASEMAGYTAPRLNSHSVLILNGQTGEALYEKNA 61
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK--GSTMTLD 105
AS++KLMTA V+ L +T+S + ++ + +
Sbjct: 62 HQRMPIASISKLMTAMVLLDSGAP----LDQMVTVSDAEIDRVKHTTSRLAVGTTLSRQE 117
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
L L+ A + FV+ MN +++LG++ T F + G+ T
Sbjct: 118 MLLLALMSSENRAAATLARTAFPGGTPIFVERMNLKARSLGMTETVFHDPTGLDVRNTST 177
Query: 166 T---ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFT 221
A+ + QI + + +Y N+N V KTG+
Sbjct: 178 AADLAKMVQAAQKYPLIREFTTTERHQIVSVRNRVLQYKNSNALVREGDWDIAVQKTGYI 237
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V A G Q LI V+L A + R + ++ +
Sbjct: 238 QEAGRCMVLQATVGSQPLIFVLLDAGASSARANDAKNIRTW 278
>gi|239623982|ref|ZP_04667013.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522013|gb|EEQ61879.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 337
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 65/278 (23%), Positives = 101/278 (36%), Gaps = 26/278 (9%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+F A + L D + V+ PAS+TK+MTA
Sbjct: 63 RFSDAFASDLCVVTDEASFDPGFATSEAAALFDLDDREVLYSKDAFERMYPASITKIMTA 122
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
V K +L T + + G T+TL+ L L++ S ND A
Sbjct: 123 LVAIREGDLKSRVLVTDDAVITEPGATL---CGIEPGDTLTLEQLLYGLMLPSGNDAGAA 179
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
IA + + F MN + LG + THFMN HG+ HYTTA D+ ++ +P
Sbjct: 180 IAVHIAGSVDAFADMMNEEALRLGATGTHFMNPHGLNDPDHYTTAYDLYLIFNEAL-KYP 238
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLG------------------ADGMKTGFTCAS 224
+ Y N N + G KTG T A+
Sbjct: 239 VFRQIVGTTAYTAN---YHNKNSEPVSKTWKGSNWFMTGERETPDGLKVFGGKTGTTKAA 295
Query: 225 GFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLS 261
G+ ++ ++ D+ I+V+L A R +++S
Sbjct: 296 GYCLIMASRDDSDKEYISVVLKADSRPHLYDNMTNIIS 333
>gi|291524730|emb|CBK90317.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629]
Length = 371
Score = 114 bits (284), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/257 (20%), Positives = 101/257 (39%), Gaps = 19/257 (7%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
L D + I AS TK++T V + +
Sbjct: 63 VNEPRLHAVSAALYDADDETFIYGKNMRDSMANASTTKILTCIVALEKAD-----INDTV 117
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
TIS+NA+ P G++ + + L ++++S ND A AIAE + + + F + MN
Sbjct: 118 TISQNAASQPEVKLGLVAGNSYNMKDLLYGMMLESFNDCAYAIAEHVGGSTEGFAKLMNE 177
Query: 141 TSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYMHYFQIKG---- 192
+ +G T+F+ +G+ H++TA D+ ++ P+ + +I
Sbjct: 178 KANEIGCLGTYFITPNGLDAENDISFHHSTAGDLCVIMSYCAWKSPKSTQFLEITQTMQY 237
Query: 193 ---LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA--- 246
+ + N N + KTGFT +G+ VA+ + + + +LG
Sbjct: 238 TFETKEGQMVFSNHNRLLTETDYCISGKTGFTTKAGYCYVAAVEKDGRRMCLSLLGCGWP 297
Query: 247 LDRNTRNKVSASLLSMG 263
++N + + SL+
Sbjct: 298 NNKNYKWADAKSLVEYA 314
>gi|299782758|gb|ADJ40756.1| Serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus fermentum
CECT 5716]
Length = 389
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 57/331 (17%), Positives = 116/331 (35%), Gaps = 29/331 (8%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
T +D TG V+ + AS++KJ+T V+ +K K T + ++K
Sbjct: 55 TVNAKAAIAIDATTGQVLYXKNANTKLAIASISKJITVGVIEQEIKAGKLSWNTKVKVTK 114
Query: 85 NA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
SN T G + T+ + ++KSA+ A+ ++ + + FV+ M
Sbjct: 115 EEAKLSENTEYSNITLTAGKSYTVKELTEAAMIKSADAAAITLSRATGDSTASFVKKMQA 174
Query: 141 TSKNLGLSATHFMNAHGVVQHG--------------HYTTARDMAILSWRIKTDFPQYMH 186
K G++ N G+ + TA D+A ++ + ++P ++
Sbjct: 175 FVKKAGVTDAKLYNQVGLTNSQMGSYGLKGVAKNAENEMTATDVAKIAQYLIKNYPSLLN 234
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLG------ADGMKTGFTCASGFNIVASAIQGDQSLI 240
++ I G N + DG+KTG + +G V++ +I
Sbjct: 235 ITKLTSTTIDGTTVTTINKMLAGQSDAPTQVKIDGLKTGTSDKAGACFVSTGTYQGHRII 294
Query: 241 AVILGAL-DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
V+L A + R +A+L + T + ++ ++
Sbjct: 295 TVVLHATGGGDERFTQTANLYHLIANEYTAYTVQPSVAXTVPNGKVTTTTLTTQGKITLW 354
Query: 300 QKEII----NYNTQMKEAKDKESHFIDFEKI 326
+K+ + K A +K
Sbjct: 355 KKDGTLLSPSLAINSKAADKNGKLTAPVKKG 385
>gi|291530580|emb|CBK96165.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
Length = 734
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 54/301 (17%), Positives = 111/301 (36%), Gaps = 18/301 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++ + G ++ E +PA L K+M + + + + I
Sbjct: 13 PEINAQAAIVVTQHEGRILLEKNARMKLSPAFLIKIMASIIALEKCNPNDTVTVSDSVIK 72
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ ++ ++ + G +++ + + +++ SAND A+AE +C + KF M +K
Sbjct: 73 QISNWKGSASINLEAGEKISVLDLIYSMMLVSANDSLFALAEFICGSLDKFAVMMQEKAK 132
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG-----LEIKGK 198
++G + T A G Y+ A D+AI+ T+ K + +
Sbjct: 133 SIGAADTTITTADGRFTAEQYSNAYDLAIICRYCMTNRMFRTIAATDKYTIPATNKNGSR 192
Query: 199 KYPNTN------WAVGTFLGADGMKTGFTCASGFNIVAS----AIQGDQSLIAVILGALD 248
NTN + A G+K+G+T S + S A + + ++A+ILGA +
Sbjct: 193 DLQNTNLLINSGNRRYRYETAIGIKSGYTARSKSCLACSALPPANKFGEEVLAIILGAEN 252
Query: 249 RNTR---NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
+ +LL F N ++ V + E + + +
Sbjct: 253 TKQMKYVFYDAITLLDFTFNNYEALSGKKPEQQNSEAGKTITTVGKLCEILNAELRNAAD 312
Query: 306 Y 306
Sbjct: 313 V 313
>gi|28378040|ref|NP_784932.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
WCFS1]
gi|28270874|emb|CAD63779.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus plantarum
WCFS1]
Length = 412
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 63/342 (18%), Positives = 127/342 (37%), Gaps = 38/342 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ + N+ + ++ +++ ++D +G V+ D ASL+KLMT Y
Sbjct: 15 LTATVSGVLGCNVAAHATSSKADEVKAAYVMDAKSGQVVYAQNADQKLPIASLSKLMTLY 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDI 119
+V ++ + T + I KN + S T T+ +V S+N
Sbjct: 75 LVERAIEHGQIKWTDAVPIRKNVRKMATSATLSVMPMPAKETFTVRELFAATLVGSSNSG 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ----------------HGH 163
A+A+ E + + KF++ MN + L F++A G+ +
Sbjct: 135 AIALGEYVAGSNDKFIKLMNQQAAKWHL-DASFISASGLDNTDLKNYDLKIKGTSDQDQN 193
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG------ADGMK 217
+AR + ++ + +P + + ++I P + + DG+K
Sbjct: 194 LVSARAVTTIAQHLIDAYPDVIQVANQRSVKIHKYTVPTSVEILKGAEYYDPRVPVDGLK 253
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII 277
TG+T +G +VA+ Q +IA LG + T N +L K
Sbjct: 254 TGYTNQAGACLVATYRQNGHRMIATTLGGAWQFTANNNLRLML-----------KTTEQY 302
Query: 278 KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
K ++++ ++P +V K K+ +
Sbjct: 303 KQVVPKSINYQIPGTQTKVRLVTKYNSKLWVNSKQPMTQTKI 344
>gi|293400703|ref|ZP_06644848.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291305729|gb|EFE46973.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 332
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 77/334 (23%), Positives = 135/334 (40%), Gaps = 31/334 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ L +++ ET Y ++ VI E + AS++K+M
Sbjct: 4 MKKLLCFFLCLIINL--------ETVHGQSYCVMSDADNTVIEEKDMHKVQSVASISKVM 55
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA + L K + S K+G ++L + L L+++S ND A
Sbjct: 56 TAILALEK-----GDLNATWKTGKELKQAYGSMIYLKEGQQVSLRSLLYGLMLRSGNDAA 110
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIK 178
+ IA + KT+KKFVQ MN +K +G+ THF N G+ G+ ++A DMA+L
Sbjct: 111 LEIALHIGKTQKKFVQMMNEKAKEIGMLDTHFANPSGLDEEDGGNLSSAYDMALLMSY-A 169
Query: 179 TDFPQYMHYFQIKGLEIKG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
P + K + ++ N N + + A KTGFT +G ++++A +
Sbjct: 170 MKNPAFREISGTKYYTSEWNYRWRNKNKLLFEYPFAIAGKTGFTKKAGRTLISAAKHENV 229
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
+ V LG D F+ + K + I + + +++C
Sbjct: 230 ENVIVTLGMGD------------DFTFHEQKHTKVFDEIKVIPILAKGKYVIDH--KQIC 275
Query: 298 TTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
+ + + + SHF D E I ++N
Sbjct: 276 IPEDIAVTITQKEQAKLMVSSHFEDKEFIIEIRN 309
>gi|126651542|ref|ZP_01723745.1| hypothetical protein BB14905_13055 [Bacillus sp. B14905]
gi|126591491|gb|EAZ85597.1| hypothetical protein BB14905_13055 [Bacillus sp. B14905]
Length = 278
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 53/260 (20%), Positives = 103/260 (39%), Gaps = 13/260 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M+++++ + ++ + + + LL+ G V+ E D
Sbjct: 1 MKKWVLFCCLVIVIFVLYDTNKTQEFAHLELPSLHSQNALLLNEQ-GDVLYEKNADAIIY 59
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
PASLTK+MTA V + + + S + F G +T+++ L +
Sbjct: 60 PASLTKIMTAIVAIEMTDDLQMQTIVKPQTIAKYTAQNASMAGFHAGDFVTIEDLLYGTL 119
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ S D +AE++ +E +FV +MN ++ LG+ ATHF+N G+ H ++ +DM+
Sbjct: 120 LASGADATATLAEAIAGSEDEFVTYMNKKAQELGMDATHFINTSGLHDEAHVSSLQDMSK 179
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM----KTGFTCASGFNI 228
L + Y + + N DG KTG+T +G +
Sbjct: 180 LLRYALENPTFYQIFTSKAYTTHVPTELLIANSLFTRMPSMDGTILGGKTGYTPEAGLCL 239
Query: 229 VASAIQGDQSLIAVILGALD 248
+ + + + + A
Sbjct: 240 ASLMEKDGRKFLFITTNAPG 259
>gi|295838564|ref|ZP_06825497.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
gi|295827061|gb|EDY44744.2| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
Length = 518
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 46/299 (15%), Positives = 91/299 (30%), Gaps = 49/299 (16%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM---TAYVVFSFLKEKKAMLTTP 79
+ + + D +G ++A P PAS K++ T F + + L
Sbjct: 126 PKKLTARSWVVADAESGEILAARNPHWRLAPASTLKMLFADTLLPKFPKDRVHQVTLKDL 185
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
I + +S + L L+ AV + ++ + VQ M
Sbjct: 186 DGIGEGSSLVGIKEDLPYSVHDLWLGVFLRSGND------AVHVLSAMNGGVGRTVQDMR 239
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
+ L + TH + G G ++A D+ + + + + Y +
Sbjct: 240 ARAHELQANDTHVVTPDGYDAKGQVSSAYDLTLFARDGLQN-ADFREYCSTAEAQFPGEF 298
Query: 196 ---------------------------KGKKYPNTNW------AVGTFLGADGMKTGFTC 222
+ NTN + + G G+K G T
Sbjct: 299 AKKRKKDKDKDEKKPVDGQAGPGQGPREHFGIQNTNRLLTGAPDLKPYQGIAGVKNGNTT 358
Query: 223 ASGFNIVASAIQGDQSLIAVILG--ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
+G A A +GD+ L+ ++ + + + LL GF + ++
Sbjct: 359 NAGATYTAYAQRGDRKLLVTVMHPDYDETQAVYREAGRLLDWGFAADGKVTPVGELVPT 417
>gi|295091874|emb|CBK77981.1| D-alanyl-D-alanine carboxypeptidase [Clostridium cf.
saccharolyticum K10]
Length = 283
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 63/272 (23%), Positives = 109/272 (40%), Gaps = 24/272 (8%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ A A+ L + G V+ PAS+TK+MTA +
Sbjct: 13 LFASALCVVDGETKDAGTELTAEAGALFNITDGTVLYSKNVFEELYPASITKVMTAILAI 72
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+ L+ +T++++A S K G T+T++ L L++ S ND A AIA
Sbjct: 73 EEGE-----LSDEVTVTQDAVITEAGASLAGIKPGDTLTMEQLLYGLMIPSGNDAANAIA 127
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--------- 175
+ + + F + MN ++ LG + THF N +G+ HYTTA D+ ++
Sbjct: 128 VHMSGSLESFAERMNEKARELGATHTHFKNPNGLTDPEHYTTAYDLYLIFNEALKLPKFR 187
Query: 176 -----RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
T + + G Y N + G KTG T A+G+ ++
Sbjct: 188 EVIGADSYTASYRDADGNTVSKTWKVGNWYQNGEEKAPQGVTVLGGKTGTTQAAGYCLIM 247
Query: 231 SAIQG--DQSLIAVILGALDRNTRNKVSASLL 260
A + + I+V+L A +R +++
Sbjct: 248 -AERDESGREYISVVLKAENRQGLYDNMTNII 278
>gi|291528948|emb|CBK94534.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1]
Length = 371
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 54/276 (19%), Positives = 108/276 (39%), Gaps = 19/276 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ + + A ++ L D + I AS TK++T
Sbjct: 44 KKSVFMAAENTVAKNTDKAVNEPRLHAVSAALYDADDETFIYGKNMRDSMANASTTKILT 103
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
V + +TIS+NA+ P G++ + + L ++++S ND A
Sbjct: 104 CIVALEKAD-----INDTVTISQNAASQPEVKLGLVAGNSYNMKDLLYGMMLESFNDCAY 158
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRI 177
AIAE + + + F + MN + +G T+F+ +G+ H++TA D+ ++
Sbjct: 159 AIAEHVGGSTEGFAKLMNEKANEIGCLGTYFITPNGLDAENDISFHHSTAGDLCVIMSYC 218
Query: 178 KTDFPQYMHYFQIKG-------LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
P+ + +I + + N N + KTGFT +G+ VA
Sbjct: 219 AWKSPKSTQFLEITQTMQYTFETKEGQMVFSNHNRLLKETDYCISGKTGFTTKAGYCYVA 278
Query: 231 SAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMG 263
+ + + + +LG ++N + + SL+
Sbjct: 279 AVEKDGRRMCLSLLGCGWPNNKNYKWADAKSLVEYA 314
>gi|33592636|ref|NP_880280.1| D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis Tohama I]
gi|33600419|ref|NP_887979.1| D-alanyl-D-alanine carboxypeptidase [Bordetella bronchiseptica
RB50]
gi|33568018|emb|CAE31931.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella
bronchiseptica RB50]
gi|33572282|emb|CAE41834.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis
Tohama I]
gi|332382053|gb|AEE66900.1| D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis CS]
Length = 259
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/238 (19%), Positives = 89/238 (37%), Gaps = 8/238 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ + D T V+ + AS++KLMTA VV + I I+ +
Sbjct: 15 LRSSTAYVQDLETSTVLFAKNENVVRPIASISKLMTALVVVDA----NLPMDEMIEITDD 70
Query: 86 ASEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ ++ + G+ ++ + L L ++ S N A A+ + FV MN +++
Sbjct: 71 DVDTLKHTTSRLRVGTVLSRGDMLHLALMSSENRAAHALGRNYPGGMPAFVAAMNAKARS 130
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PN 202
LG+ T F+ G+ + +L + +EI + N
Sbjct: 131 LGMLNTRFVEPTGLSSENVSSPRDLARMLRAASQRPLIHRYSTDTEYEVEINNRTQTFRN 190
Query: 203 TNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
TN V KTGF +G +V A + + V+L + + +R + +
Sbjct: 191 TNLLVRKPDWDIKVSKTGFINEAGECLVMLARINGRDMAIVLLDSQGKLSRIGDAVRI 248
>gi|86148565|ref|ZP_01066850.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222]
gi|85833631|gb|EAQ51804.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. MED222]
Length = 200
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 95/184 (51%), Gaps = 6/184 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + ++ F + A + L+D ++G V+AE + +PASLTK+MT+
Sbjct: 16 VALSATIATSSFAAPIIVPDAPQIAAKGFVLMDYHSGKVLAEKEMNTQLSPASLTKMMTS 75
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YVV L+ L + IS+NA S + G+T+ ++ + +I++S ND
Sbjct: 76 YVVGQELERGNINLNDDVVISENAWAKNFPDSSKMFIEVGTTVKVEELNRGIIIQSGNDA 135
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
VA+AE + +E FV MN + ++G+ THF N HG+ Y+T DMA+L +
Sbjct: 136 CVAMAEHIAGSEDAFVDLMNAWASSIGMKDTHFANVHGLDNPNLYSTPYDMALLGQALIR 195
Query: 180 DFPQ 183
D P
Sbjct: 196 DVPD 199
>gi|319937143|ref|ZP_08011550.1| hypothetical protein HMPREF9488_02385 [Coprobacillus sp. 29_1]
gi|319807509|gb|EFW04102.1| hypothetical protein HMPREF9488_02385 [Coprobacillus sp. 29_1]
Length = 406
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 70/344 (20%), Positives = 132/344 (38%), Gaps = 17/344 (4%)
Query: 1 MRQFLVIIAMAMLSNIF-----PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ + + +L + + +I Y L D +T V E + PAS
Sbjct: 1 MKKIVSSLIACLLIFLSIQPIHAYTNINIELYSQYAYLYDRDTSLVYMEKKSNEKIYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK++T + ++ + + ++T K E + + G +T ++ L ++ S
Sbjct: 61 MTKILTVSLALDYITDLQEVVTIKQADFKGVVEEGATVAGLFPGEKVTYEDLLYGALLPS 120
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
D A+A + V MN LGL THFMN G+ HYTTA +MA++
Sbjct: 121 GADACQALARLIFGDVDHMVTAMNEKVIELGLQQTHFMNVTGLHDEKHYTTAHEMALILN 180
Query: 176 RIKTD--FPQYMHYFQIKGLEIKGKKYPN-TNWAVGTFLGA---DGMKTGFTCASGFNIV 229
+ F + K + + + N + +G K+GFT +G
Sbjct: 181 HALQNKEFVKVFEARSYKSSKGNHQWISSLQNAKDNKDMDVSLINGGKSGFTDEAGLTYA 240
Query: 230 ASAIQGDQSLIAVILGALDRNTRN--KVSASL---LSMGFYNKTDRKKINYIIKDFYQQN 284
++ LI V A DR RN + +A++ + F+N KK I + ++
Sbjct: 241 STMTIDQHRLILVTAKAEDRRKRNHIRDAATVSQYMDQSFHNVVLYKKDEEIDTFWVLKS 300
Query: 285 LSNEVP-NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+++ ++ IN + + ++ K
Sbjct: 301 FQGSYQMKAQQDISLLVEKTINKSDLDIQVNIQKWKEAPIYKGD 344
>gi|229163983|ref|ZP_04291922.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
gi|228619485|gb|EEK76372.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus R309803]
Length = 273
Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I ++ + + Y + +TG ++ D PAS+ K+MT
Sbjct: 9 FTGMIFLSYAHRQQAVRADQPSITGQYGITIAADTGEILYGKREDERSYPASIAKMMTTL 68
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE ITI++NA + + G + D ALKL+++ SA+ IA
Sbjct: 69 LLLENVKE-----DEEITITENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 124 SIAEHIAGSKNEFVKMMNERAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 183
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ PN A G K+G + + +V + +
Sbjct: 184 VVLEYMNSTRTTLHTSERSPNIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 244 RVINVVL-SSTRTQLYPDTKKMAHYAFQQ 271
>gi|121604627|ref|YP_981956.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Polaromonas
naphthalenivorans CJ2]
gi|120593596|gb|ABM37035.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Polaromonas naphthalenivorans CJ2]
Length = 363
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 54/272 (19%), Positives = 103/272 (37%), Gaps = 16/272 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLS------IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
++ +I A+ F ++ K ++D +T V+ AS
Sbjct: 74 KRPSIIQALIPAIPSFGQMAGLHSAIDPLDLKSSVALVIDQDTREVLFSKNDHAVLPIAS 133
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF-KKGSTMTLDNALKLLIVK 114
LTKLMT ++ + + IT++++ + + + G+T++ L L ++
Sbjct: 134 LTKLMTGVIISGA----RLPMDEMITVTQDDVDTEKHSRSRLSVGATLSRGEMLHLALMS 189
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S N A A+ + FV MN +K LG+ T + G+ + ++A+D+A L
Sbjct: 190 SENRAAHALGRTYPGGMATFVSLMNAKAKMLGMHDTSYAEPTGL-SSRNQSSAQDLAALV 248
Query: 175 WRIKTDFPQYMHYFQIKGLEI---KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVA 230
D + ++ NTN V G KTG+ +G +V
Sbjct: 249 NAAHGDPVLRELTTSPGYQVAVGSRTLQFNNTNRLVKNPDWDIGLQKTGYINEAGQCLVM 308
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+ LI V L + + +R + +
Sbjct: 309 QTKIAGRKLIMVFLDSAGKLSRLGDAERVRRW 340
>gi|282863879|ref|ZP_06272937.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
sp. ACTE]
gi|282561580|gb|EFB67124.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
sp. ACTE]
Length = 321
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 60/264 (22%), Positives = 107/264 (40%), Gaps = 21/264 (7%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ +++ T + D S TK+MTA VV +K L + +
Sbjct: 61 PPTPSITAKGGFVMNNGTAKALYSKAADTRRPTGSTTKIMTAKVVL---AQKNLNLDSKV 117
Query: 81 TI----SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
TI S S++ G +T+ L L++ S D A A+A+ + +
Sbjct: 118 TIQKAYSDYIVSKNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGSGSTRAAR 177
Query: 137 ------HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM----- 185
MN ++K+LGL THF + G+ +Y+T RD+ L+ +
Sbjct: 178 VKSFIGKMNASAKSLGLKNTHFDSFDGIGSGSNYSTPRDLTKLASNAMKNSTFRTVVKTK 237
Query: 186 ---HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
K + + NTN +G + GA G+KTG + + +V +A + +++I
Sbjct: 238 STKQKVTTKSGGYRYMAWDNTNPLLGGYSGAIGVKTGSGPTAKYCLVFAATRNGKTVIGT 297
Query: 243 ILGALDRNTRNKVSASLLSMGFYN 266
+L + ++R + LL GF
Sbjct: 298 VLTSSSVSSRTSDAKKLLDYGFKK 321
>gi|311108185|ref|YP_003981038.1| D-alanyl-D-alanine endopeptidase 2 [Achromobacter xylosoxidans A8]
gi|310762874|gb|ADP18323.1| D-alanyl-D-alanine endopeptidase 2 [Achromobacter xylosoxidans A8]
Length = 399
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 10/249 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ A + + D T VI + AS++KLMTA VV
Sbjct: 139 ASSVRAEAAALRSTTAYVQDLETSTVIFAKNENVVRPIASISKLMTAVVVVDA----NLP 194
Query: 76 LTTPITISKNASEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ + I+ + ++ + G+ +T + L L ++ S N A A+ F
Sbjct: 195 MDEMLEITDEDVDGLKHTTSRLRVGTKLTRGDMLHLALMSSENRAANALGRHYPGGLPAF 254
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL- 193
V MN ++ LG+++T F+ G+ + ++ D+A L + + +
Sbjct: 255 VAAMNAKAQALGMTSTRFIEPTGL-SSDNVSSPHDLARLLRAASQRPLIHRYSTDTEYDV 313
Query: 194 --EIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ + + NTN V KTG+ +G +V A + L V+L + +
Sbjct: 314 EVNNRTQTFRNTNLLVRKPDWDIKVSKTGYINEAGECLVMLARINGRDLAIVLLDSQGKL 373
Query: 251 TRNKVSASL 259
+R + +
Sbjct: 374 SRIGDAVRI 382
>gi|225572130|ref|ZP_03780994.1| hypothetical protein RUMHYD_00424 [Blautia hydrogenotrophica DSM
10507]
gi|225040396|gb|EEG50642.1| hypothetical protein RUMHYD_00424 [Blautia hydrogenotrophica DSM
10507]
Length = 370
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 65/245 (26%), Positives = 100/245 (40%), Gaps = 20/245 (8%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
L D ++G V+ PAS+TKLMTA + F + K T I E
Sbjct: 126 LFDLSSGEVLYSKDLYEKVYPASITKLMTAMLAF---QSGKLDSTVTIQQEDLDLESGSQ 182
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
F G +TLD ++ L+V S ND A AIA + +++KFV MN+ + LG++ THF
Sbjct: 183 VCGFMVGDQVTLDQLVRCLLVYSGNDAASAIARYVGGSQEKFVAMMNDYAAKLGMTGTHF 242
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--------------- 197
N HG+ HYTT D+ L ++ +Y+ Q+
Sbjct: 243 ENPHGLHTENHYTTVYDIY-LMLNEAMNYSEYLEIAQLSSYTANFEHADGSEASITLEST 301
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVS 256
Y + G KTG T +G + Q + +++ A + +
Sbjct: 302 DHYLTGETTPPKDVTVLGGKTGTTSDAGNCLALLVQNAYGQPYVCIVMNASTKEILYQQM 361
Query: 257 ASLLS 261
+LLS
Sbjct: 362 NTLLS 366
>gi|330817668|ref|YP_004361373.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
gladioli BSR3]
gi|327370061|gb|AEA61417.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
gladioli BSR3]
Length = 383
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 101/248 (40%), Gaps = 10/248 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D N+ + + AS++KLMTA VV A L
Sbjct: 122 TPDALALRSSVAYVVDQNSSEPLFDKNSRAVVPIASISKLMTAMVVLDSK----ASLDEQ 177
Query: 80 ITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
IT++ ++ + S GS ++ ++ L + ++ S N A A++ F+ M
Sbjct: 178 ITVTDEDRDYEKGTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFIAAM 237
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +K+LG++ THF N+ G+ + ++ARD+ +
Sbjct: 238 NAKAKSLGMTDTHFENSTGLTSL-NVSSARDLVKMIDAAYQYPLIRRFSTDRTYTVFTGK 296
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN V G KTGF +G +V + ++ V+L + + +R
Sbjct: 297 RSLVYNSTNALVRNPSWDIGLQKTGFINEAGECLVMQTTIHGRPIVMVLLDSFGKYSRVA 356
Query: 255 VSASLLSM 262
++ + +
Sbjct: 357 DASRVRNW 364
>gi|145506951|ref|XP_001439436.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406620|emb|CAK72039.1| unnamed protein product [Paramecium tetraurelia]
Length = 408
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 58/263 (22%), Positives = 115/263 (43%), Gaps = 16/263 (6%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+I P S+ + +L+ G +++ + AS+TK+MT ++ ++
Sbjct: 145 ISISPIDSVGPLVSAQSWCILNGKNGQLMSGQHQYKSRQMASITKIMTCWLALKLTQQYH 204
Query: 74 AMLT-TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L T T+ + A + + G +++ + L L++ S ND A++I + +
Sbjct: 205 LDLDNTYFTVPEKAERIGGTTAQLSSGDKLSIRDLLYGLMLPSGNDAAISIQHNFELYKG 264
Query: 133 -KFVQHMNNTSKNLGLSATHFMNAHG----VVQHGHYTTARDMAILSWRIKTD------- 180
F+Q MN +++++G+ T + N HG + +Y++A D+ +L++ +
Sbjct: 265 CDFIQQMNQSAQDIGMEMTSYSNPHGMNSCLYHEDNYSSAYDIGVLTYNAMQNLQFASIV 324
Query: 181 -FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
Y + K E K + NTN + + G G+KTG T +G +V S
Sbjct: 325 KTKIYFSEIEDKFGESKEIFWENTNKML--YQGFRGVKTGITKEAGPCVVEYFEDNQNSY 382
Query: 240 IAVILGALDRNTRNKVSASLLSM 262
I V+L + R + + LL
Sbjct: 383 IIVLLNCRSVDQRWQDTIKLLDW 405
>gi|295110005|emb|CBL23958.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
Length = 378
Score = 113 bits (281), Expect = 5e-23, Method: Composition-based stats.
Identities = 62/248 (25%), Positives = 101/248 (40%), Gaps = 24/248 (9%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE--Y 89
LLD V+ PAS+TK++TA + F + +TIS+
Sbjct: 133 VLLDLKDKSVLFAKGAYERVYPASITKIITALLAFKNS-----NMDDVVTISQENITLEE 187
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
F++G +T+D + L+V S ND A AIA + T + FV MN + LG +
Sbjct: 188 GSQVVGFQEGDQVTMDQLVHCLLVYSGNDAASAIATHVGGTTENFVSMMNEYAAQLGCTG 247
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------------ 197
THF N HG+ HYTT D+ ++ ++P++ Q+ +
Sbjct: 248 THFTNPHGLQDENHYTTPYDIYLMLKEAL-NYPEFTEITQMPSYTVTFTHSDGSEESVAL 306
Query: 198 ---KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTRN 253
Y V + G KTG T ++G + + I++++GA +
Sbjct: 307 TATDHYLTGEANVPKGVTVLGGKTGTTNSAGNCLALLSQNSYGSPYISIVMGASSKELLY 366
Query: 254 KVSASLLS 261
+ SLL
Sbjct: 367 QQMTSLLE 374
>gi|260588732|ref|ZP_05854645.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
20583]
gi|331084099|ref|ZP_08333206.1| hypothetical protein HMPREF0992_02130 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260540914|gb|EEX21483.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
20583]
gi|330402461|gb|EGG82031.1| hypothetical protein HMPREF0992_02130 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 340
Score = 113 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 13/236 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D V+A + PAS+TK++T + L + + + P+
Sbjct: 80 DIYSEAAIVKDVQNNKVLASKNAEERIYPASMTKILTLLIAVEELSDLEEKVQIPVDEVL 139
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
E S + F+ G +++ + L L++ S + A+A + +E+ F + MN +K
Sbjct: 140 AEYERGASMAGFQPGEKVSVKDLLYGLMLPSGAECCTALACRISGSEEAFAEKMNERAKE 199
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL----------- 193
LG+ +HF+NA G+ + HYTT D+ IL + + + F +
Sbjct: 200 LGMLNSHFVNASGLHEEEHYTTVTDIMILLEQAIKN-ETFYEVFTTRSYTTAPTAAEPNG 258
Query: 194 -EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ Y + T G KTGFT A+G + + A+ Q I V GA
Sbjct: 259 ITFESTMYDKKSTLEVTDGEILGGKTGFTNAAGQCLASLAMVEGQEYILVTAGADG 314
>gi|295837711|ref|ZP_06824644.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
gi|197695913|gb|EDY42846.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces sp. SPB74]
Length = 308
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 56/250 (22%), Positives = 104/250 (41%), Gaps = 19/250 (7%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
LLDT++G + D AS TK+MTA VV T ++
Sbjct: 43 YLLDTSSGKALYSKAADTKREMASTTKVMTAAVVLDTKGLNLDKKVTIQQAYRDYVVKKG 102
Query: 92 SNS-TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ------HMNNTSKN 144
+++ + G +T+ L ++ S D A A+A++ + + MN +K+
Sbjct: 103 ASTADLRTGDKVTVRQLLYAALLPSGCDAAYALADTFGTGKTATARTADFIAKMNAKAKS 162
Query: 145 LGLSATHFMNAHGVVQH-GHYTTARDMAILSWRIKTDFPQYM--------HYFQIKGLEI 195
L ++ T + + G+ +YTT RD ++L+ +
Sbjct: 163 LKMANTSYDSFDGIPTKSKNYTTPRDASLLAQHALKNSTFRTVVKAKSTKQTATASNGNT 222
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ + NTN +G++ GA G+KTG SG +V +A + +++ VIL + R +
Sbjct: 223 RTYTWYNTNKLLGSYDGAIGIKTGTASGSGPCLVFAATRHGRTVAGVILN---DSNRFED 279
Query: 256 SASLLSMGFY 265
+A ++ F
Sbjct: 280 AAKIMDYAFK 289
>gi|83644147|ref|YP_432582.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396]
gi|83632190|gb|ABC28157.1| D-alanyl-D-alanine carboxypeptidase [Hahella chejuensis KCTC 2396]
Length = 313
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 56/282 (19%), Positives = 111/282 (39%), Gaps = 25/282 (8%)
Query: 1 MRQFLVIIAMAMLSNIF-------------PFLSIAETNKLPYYTLLDTNTGHVIAENYP 47
M+ L+ +++ S++ + + ++D +G + P
Sbjct: 1 MKNILIALSLLFCSSVVLADSETTLPENLQSLDTANISLGSVNAKVVDVESGVTLFAKNP 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS-TFKKGSTMTLDN 106
+ AS++KLMTA VV L +TI++ + + + G+ +
Sbjct: 61 ETVAPIASISKLMTAMVVLDAE----LPLDEMLTITEEDIDTWKNTYSRMRIGAVLPRSE 116
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
L L ++ S N A+A+ + FV MN+ ++ LG+ T F+ G+ + +T
Sbjct: 117 LLLLALMSSENRAALALGRTYPGGMTAFVSAMNDKARALGMRNTRFVEPSGL-SMENVST 175
Query: 167 ARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGF 220
A D+ + +++ D+ Y G ++ NTN V + KTGF
Sbjct: 176 ASDLVKMVSTASRYKLIRDYTTTPSYMIKLGETENEMEFRNTNLLVRQGDWGVNLSKTGF 235
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+G +V A G++ + V+L + R T + +
Sbjct: 236 INEAGRCLVMLANVGERPVAMVLLDSYGRRTPVGDANRIKQW 277
>gi|229014198|ref|ZP_04171319.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
gi|228747152|gb|EEL97034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
Length = 301
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 37 FTGMIFFSYAQRQQVVRADQPNITGQYGITIDADTGEILYGKREDERSYPASIGKMMTTL 96
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 97 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 151
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 152 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKESLKYP 211
Query: 182 PQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ I + K N A G K+G + + +V + +
Sbjct: 212 IVLEYMNSIHTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 271
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 272 RVINVVL-SSTRTQLYPDTKKMAHYAFQQ 299
>gi|330960895|gb|EGH61155.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 311
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 58/265 (21%), Positives = 102/265 (38%), Gaps = 13/265 (4%)
Query: 7 IIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+++ A +N L+ + ++D T V+ + PD AS+TKLMTA
Sbjct: 18 VLSTATFANETAVLNRDPSNLHLASGSAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAM 77
Query: 64 VVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + + I ++ E S K GS M + L + ++ S N A +
Sbjct: 78 VVLDAKQ----SMDEVIPVNISQTPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAAS 133
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A S F+ MN +K LG+ T ++ G+ + T ++ K
Sbjct: 134 LAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKYPML 193
Query: 183 QYMHYFQIKGLEIKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQ 237
+ + K + + Y NT+ V KTGFT +G +V ++
Sbjct: 194 SELSTTEQKTVTFRKPTYTLGFSNTDHLVHKDNWDIKLTKTGFTNQAGHCLVLLTTMANR 253
Query: 238 SLIAVILGALDRNTRNKVSASLLSM 262
+ VIL A + T ++ +
Sbjct: 254 PVSVVILDAFGKYTHFADASRIRKW 278
>gi|332522835|ref|ZP_08399087.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus
str. Jelinkova 176]
gi|332314099|gb|EGJ27084.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus porcinus
str. Jelinkova 176]
Length = 412
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 61/349 (17%), Positives = 130/349 (37%), Gaps = 31/349 (8%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
L+ A + +TG ++ E ASL+K++T Y+V+ ++
Sbjct: 13 FYFLPKVTLAEAYKLPARSGIAFEVSTGKILYEKDAKKKLPIASLSKVLTTYLVYKEVQS 72
Query: 72 KKAMLTTPITISKNASE---YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
TP+ IS E ++ T++ L ++V +AN A+A+AE +
Sbjct: 73 GNLSWDTPVKISNYPYELTANYSISNVPLDARQYTVEELLTAMLVTNANSPAIALAEKIS 132
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILS 174
TE FV M ++ + + +NA G+ + +A D+AI++
Sbjct: 133 GTEPLFVDKMQKQLRDWKIHKANLVNASGLSNEQLGNHIYPNSQKDAENKMSALDLAIVT 192
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVA 230
+ DFPQ + + +G + + N+ + GA+G+ F+ +G +++
Sbjct: 193 RHLLQDFPQVLELTKKPAATFRGDRIFSYNFLLEGMPNHRIGANGLFVAFSENNGASLIT 252
Query: 231 SAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYI------IKDF 280
S+I+ S++++IL ++ + +LL +
Sbjct: 253 SSIENKMSVVSIILNTEEVKDNKLAHFTTANTLLDNIAQKYEPVTLLRKGQILKNKTLPV 312
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + + QK NT + + ++ ++ L
Sbjct: 313 IDSPIKQVSLTSDKTLTVIQKRGTTTNTDLVISPLQKECRAPIKQKQKL 361
>gi|310779537|ref|YP_003967870.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ilyobacter
polytropus DSM 2926]
gi|309748860|gb|ADO83522.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ilyobacter
polytropus DSM 2926]
Length = 368
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 66/339 (19%), Positives = 127/339 (37%), Gaps = 16/339 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
R+ + +++ + F + D + + AS+TK+MT
Sbjct: 3 RKIGIFLSVILFLTTFS------NEDYTSLLVGDKDEN-IYYSENLHEKHPLASVTKMMT 55
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
VV+ ++ K L + IS A S +GS +T+ + LK + SAN+ A
Sbjct: 56 VMVVYDHIRNKDISLEDRVEISPEARSVGGSMIWIAQGSKLTVRDLLKATAIYSANNAAY 115
Query: 122 AIAESL-CKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+AE + FVQ MN +++LGL F G+ L +
Sbjct: 116 ALAEYIGKGDVDFFVQLMNQKAEDLGLGDEVEFYTPMGLPPSMTGKPMDRGTALGIYKLS 175
Query: 180 DFPQYMHYF------QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + ++ ++ N N + G G+KTG +G+NI +A
Sbjct: 176 LEALKYPEYITIASLKEDFIQDGTQRIVNRNKLLSKENGVFGIKTGHHSKAGYNISIAAK 235
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
+ + + I ++ G+ R+K A L + K I+ + + + +
Sbjct: 236 RDEVTTITIVFGSPKEEIRDKTVADSLDKFYDEYHLEKLIDTSKPMIEIEVVHGKKDVVQ 295
Query: 294 EEVCTTQKEIINYNTQMKEAKD-KESHFIDFEKITLLKN 331
+++I+ N ++ K +S EK +L +
Sbjct: 296 GYPDEEFEQLISKNWGVETRKTYIKSIEAPVEKGRILGS 334
>gi|269122125|ref|YP_003310302.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella
termitidis ATCC 33386]
gi|268616003|gb|ACZ10371.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella
termitidis ATCC 33386]
Length = 357
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 118/342 (34%), Gaps = 16/342 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M+ ++ + + + IF + L+ G++ ++ AS+TK+M
Sbjct: 1 MKTKILSLMLLLSVFIFSYDYKE--------LLVGDTKGNIYVQDNIYEVRPLASMTKVM 52
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T + + K+ L +TIS AS+ P + + I S N
Sbjct: 53 TILLTLDKVNAKEISLDDNVTISYTASKVPYGVKMNAGETFTVEELLKATAIRSSNNAAY 112
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
FV MN ++++GL + + HG+ T
Sbjct: 113 ALAEYVSHGDVYDFVDKMNERARSMGLDSLRYCTPHGLPPGNTGTCMDQGNAYDIYKLAM 172
Query: 181 FPQYMHYF------QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ ++ + TN +G G DG+KTG+ A+G NIV +A +
Sbjct: 173 TAIQYPEYMKIADKSSDYIKDGTIQLKATNNLLGKVEGVDGLKTGYHKAAGSNIVLTAER 232
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
+IAV++G+ R+ V A ++ F K ++ + + +
Sbjct: 233 DGLRMIAVVMGSEKSKNRDTVGADEINSFFSTYKKSKIVDTNKAIATIKISNKDYSLYPS 292
Query: 295 EVCTTQKEIINYNTQMKEAK--DKESHFIDFEKITLLKNKIT 334
E I N++ E K ++ + +L +
Sbjct: 293 EDVEEIININNFDASKIEYKFNVIKTLPRKIKNGEVLGDYTV 334
>gi|229062677|ref|ZP_04199986.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
gi|228716647|gb|EEL68344.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
Length = 290
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 26 FTGMIFFSYAHRQQVVRADQPNITGQYGMTIDADTGKILYGKREDERSYPASIAKMMTTL 85
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + + G + D ALKL+++ SA+ IA
Sbjct: 86 LLLENVKE-----DEEITVTENAIKTESQSAKIKLRAGEKLKRDEALKLMLIISADPIAE 140
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + +++KFV+ MN +K +G F NA G G+ + D+AI++
Sbjct: 141 SIAEHIAGSKEKFVKMMNARAKEIGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 200
Query: 182 PQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + + K N A G K+G + + +V + +
Sbjct: 201 IVLDYMNSTRTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 260
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + + F
Sbjct: 261 RVINVVL-SSTRTQLYPDTKKMANYAFQQ 288
>gi|307331360|ref|ZP_07610480.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
violaceusniger Tu 4113]
gi|306882983|gb|EFN14049.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
violaceusniger Tu 4113]
Length = 293
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 22/257 (8%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+++ TG + D + S TK+MTA VV + L +T+ K S+
Sbjct: 40 KGGFVMNNGTGKSLFTKAADTRRSTGSTTKIMTARVVLAQP---NLNLDAKVTVQKAYSD 96
Query: 89 YPPSNSTFK-----KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ------H 137
Y N+ G +T+ L L++ S D A A+A+ + +
Sbjct: 97 YIVDNNWASSAKLIVGDKVTVRQLLYGLMLPSGCDAAYALADKFGTGSTRAARVKSFIGK 156
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARD--------MAILSWRIKTDFPQYMHYFQ 189
MN T+K+LGL+ THF + G+ + +Y+T RD M ++R
Sbjct: 157 MNTTAKSLGLTNTHFDSFDGIGRGANYSTPRDLTKLASSAMKYSTFRTVVKTKSTKQKVT 216
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
K + + NTN +G++ G G+KTG + + +V +A + +++I +L +
Sbjct: 217 TKSGGYRYMSWTNTNNLLGSYSGTIGVKTGSGPEAKYCLVFAATRNGKTVIGTVLASSSV 276
Query: 250 NTRNKVSASLLSMGFYN 266
+ R + ++ GF
Sbjct: 277 DARTADAKKIMDYGFKQ 293
>gi|237747720|ref|ZP_04578200.1| D-alanyl-D-alanine-endopeptidase [Oxalobacter formigenes OXCC13]
gi|229379082|gb|EEO29173.1| D-alanyl-D-alanine-endopeptidase [Oxalobacter formigenes OXCC13]
Length = 397
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 47/247 (19%), Positives = 101/247 (40%), Gaps = 8/247 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++D + ++ E + AS+TKLMTA VV ++ +
Sbjct: 135 TPDPLSLRSNAALIVDESKLEILFEKNANIALPMASVTKLMTALVVVESMQ----DMNEI 190
Query: 80 ITISKNASEYPPSN-STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ I+++ + S K G+ M+ N L L ++ S N A A+ + K FV M
Sbjct: 191 LEITQDDVDMLKHTGSRLKVGTRMSRGNLLHLALMSSENRAAAALGRNYPGGLKGFVSAM 250
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ LG+S ++++++ G+ + ++ + + ++
Sbjct: 251 NIKAQVLGMSDSNYVDSSGLSSGNVASARDLAKLVMAASQYPILRKYSTDTHYSVDDGLH 310
Query: 199 --KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+Y +TN V KTG+ +G +V AI + ++ V L + + +R
Sbjct: 311 QLQYGSTNALVHNPNWQIQLQKTGYISEAGQCLVMKAIIDGRPIVMVFLDSKGKGSRIAD 370
Query: 256 SASLLSM 262
+ + +
Sbjct: 371 AQRIRNW 377
>gi|229169729|ref|ZP_04297429.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
gi|228613768|gb|EEK70893.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
Length = 301
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 37 FTGMIFFSYAQRQQVVRADQPNITGQYGITIDADTGKILYGKREDERSYPASIAKMMTTL 96
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 97 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 151
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN+ +K LG F NA G G+ + D+AI++
Sbjct: 152 SIAEHIAGSKNEFVKMMNSRAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 211
Query: 182 PQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ I + K N A G K+G + + +V + +
Sbjct: 212 IVLEYMNSIHTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 271
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 272 RVINVVL-SSTRTQLYPDTKKMSHYAFQQ 299
>gi|329119331|ref|ZP_08248017.1| D-alanyl-D-alanine carboxypeptidase [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464476|gb|EGF10775.1| D-alanyl-D-alanine carboxypeptidase [Neisseria bacilliformis ATCC
BAA-1200]
Length = 314
Score = 112 bits (280), Expect = 7e-23, Method: Composition-based stats.
Identities = 52/250 (20%), Positives = 99/250 (39%), Gaps = 11/250 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+L+ TG V+ + + AS++KLM+A V + +
Sbjct: 63 AAIAGPLLASQSALILNNRTGEVLYQKNMNRVMPIASISKLMSAMVTLDA----RLNMNE 118
Query: 79 PITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
ITI+++ + S G+ +T L L ++ S N A+ + FV
Sbjct: 119 VITITEDEIDRIKGTGSRLSIGTQLTRAQLLHLSLMSSENRATHALGRTYPGGMAAFVAA 178
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-- 195
MN +++LG++ + F G+ + + +TA D++ + + G
Sbjct: 179 MNAKAQSLGMADSRFYEPTGL-DYRNVSTASDLSKMVAAAAKYPQIRSNSTSTYGSVYTS 237
Query: 196 --KGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ + Y N+N V + KTG+ SG ++V A G + + V+L + TR
Sbjct: 238 AGRQQNYKNSNALVREGTWDIELQKTGYIRESGRSMVVKARIGSEPVTIVLLNSPTTTTR 297
Query: 253 NKVSASLLSM 262
+ S+ S
Sbjct: 298 VNDARSIQSW 307
>gi|257126624|ref|YP_003164738.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis
C-1013-b]
gi|257050563|gb|ACV39747.1| Serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia buccalis
C-1013-b]
Length = 422
Score = 112 bits (279), Expect = 7e-23, Method: Composition-based stats.
Identities = 85/323 (26%), Positives = 147/323 (45%), Gaps = 16/323 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
VI +MA L+ + + L+ G++I E+ AS+TK+MT+ +
Sbjct: 12 VIFSMAFLALSSLSFADGADYRDYKALLIGDVNGNIIKEDNSLAVRPLASVTKIMTSILT 71
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+K +T+S A+ P G T+ + LK I+KS+N+ A A+AE
Sbjct: 72 LDKIKSGMISYDDKVTVSSKAASV-PYGIKLTAGKQYTVRDLLKATIIKSSNNAAYALAE 130
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT-----ARDMAILSWRIKTD 180
+ FVQ MN +++ GL + + + HG+ + A+D+ L+ D
Sbjct: 131 YVGGNVPNFVQSMNEKARSYGLESLRYCSPHGLPPSYTGSCMDQGNAKDLYKLAQITVKD 190
Query: 181 FPQYMHY--FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ +Y+++ + ++ K +TN +G LG DG+KTG+ A+G NIV +A +G +
Sbjct: 191 YSEYLNFSKNKTDYVDNGNTKVTSTNSLLGNVLGVDGIKTGYHNAAGSNIVLTADRGGER 250
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
+IA+ILG+ RN + ++ + N RK NY N +N
Sbjct: 251 MIAIILGSNRAKDRNAIGTKEINDYYANGYARKNKNY--------NTNNVASATHAVDSY 302
Query: 299 TQKEIINYNTQMKEAKDKESHFI 321
E N NT + + K+ +FI
Sbjct: 303 DNIETYNANTSKETKEPKKDNFI 325
>gi|325830849|ref|ZP_08164233.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1]
gi|325487256|gb|EGC89699.1| serine-type D-Ala-D-Ala carboxypeptidase [Eggerthella sp. HGA1]
Length = 347
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 66/275 (24%), Positives = 103/275 (37%), Gaps = 32/275 (11%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
L+D + G + D ASLTK+MTA V +T I ++
Sbjct: 54 PDLDASCAALMDED-GTLWFGRNADDAAQIASLTKIMTAIVAAD-----WLDASTMIEVT 107
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND--------------IAVAIAESLCK 129
A+ S++ +G +MT D+ALK L+ S ND
Sbjct: 108 PEAASVGESSAGLAQGDSMTFDDALKALLTASGNDAASAIAQAAGARMLAQKGSGGDAYA 167
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILSWRIKT----DF 181
E FV+ MN + LGL + F N HG+ G Y+ A D+A +
Sbjct: 168 CEAAFVEAMNAKAAELGLENSFFANPHGLDFDAFAQGQYSCAADVATMLRAAMQIDLVRA 227
Query: 182 PQYMHYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQ 237
I NT+ +G++ GA KTG+T A+G + +
Sbjct: 228 NIGFSQADITVQRDGAPVTLALENTDALLGSYPGACAAKTGYTLAAGPCAATAVNRGDGH 287
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
AV+LG+ + R SA+L + N++ +
Sbjct: 288 EYYAVVLGSSSKPQRFVDSAALYDWAYANRSSLRA 322
>gi|163942729|ref|YP_001647613.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
gi|163864926|gb|ABY45985.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
Length = 279
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 60/269 (22%), Positives = 107/269 (39%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FTGMIFFSYAQRQQVVRADQPNITGQYGITIDADTGEILYGKREDERSYPASIGKMMTTL 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 75 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 130 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 189
Query: 182 PQYMHYFQIK---GLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQ 237
+ I + K N A G K+G + + +V + +
Sbjct: 190 IVLEYMNSIHTTLHTSERSPKIANYGREELYDDSYAIGSKSGLSALGKYTVVTVDEKDGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 250 RVINVVL-SSTRTQLYPDTKKMAHYAFQQ 277
>gi|224826640|ref|ZP_03699741.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Lutiella
nitroferrum 2002]
gi|224601241|gb|EEG07423.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Lutiella
nitroferrum 2002]
Length = 290
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 58/254 (22%), Positives = 100/254 (39%), Gaps = 9/254 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ ++ A +L+ G + + D P AS+TKLMTA V
Sbjct: 30 IQVAANMTGAPHLNSHTVLVLNGANGEALYQKNTDLPLPFASITKLMTAMVTLDAG---- 85
Query: 74 AMLTTPITISKNASEYPPS-NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ PITI++N + + +S G+T+ L L ++ S N A A+A + +
Sbjct: 86 LSMDEPITITENEIDRLKNTSSRLSVGTTLPRREMLLLALMSSENRAAAALARTYPGGTQ 145
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT---ARDMAILSWRIKTDFPQYMHYFQ 189
FV MN ++ LG++ T F + G+ T AR + + +
Sbjct: 146 AFVAQMNRKARALGMNNTVFYDPTGLEVRNTATAMDLARMVRAANGYPLIRTFTTTQEHE 205
Query: 190 IKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ + Y N+N V KTG+ +G +V G Q LI V+L A
Sbjct: 206 VMSGSRRMLHYKNSNALVREGDWDISLQKTGYIQEAGRCMVLQTTVGSQPLIIVLLAAGA 265
Query: 249 RNTRNKVSASLLSM 262
+ R + ++ +
Sbjct: 266 PSARVSDARAIRNW 279
>gi|288576057|ref|ZP_05978110.2| penicillin-binding protein 7 [Neisseria mucosa ATCC 25996]
gi|288566309|gb|EFC87869.1| penicillin-binding protein 7 [Neisseria mucosa ATCC 25996]
Length = 313
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 51/246 (20%), Positives = 95/246 (38%), Gaps = 10/246 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ + TG ++ + D AS++KLM+A +V + + PIT
Sbjct: 67 AGPLLTSQAALIFNNKTGEILYQKNADRVMPIASISKLMSAMIVLDA----RLDMNEPIT 122
Query: 82 IS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
I+ + S G+T+T L L ++ S N A+ + FV MN
Sbjct: 123 ITADEIDRLKGTGSRLAIGTTLTRGELLHLSLMSSENRATHALGRTYPGGMSAFVAAMNA 182
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---KG 197
+++LG+ ++ F G+ + +TA D+ + + G
Sbjct: 183 KAQSLGMYSSRFYEPTGL-NFQNVSTANDLNRMVAAASKYPLINKNSTSNYGSVWTANGR 241
Query: 198 KKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ Y N+N V + KTG+ +G ++V A +Q + V+L + TR +
Sbjct: 242 QNYKNSNALVREGSWNIELQKTGYIREAGRSMVVKANVQNQPITIVLLNSPTSTTRVNDA 301
Query: 257 ASLLSM 262
+ S
Sbjct: 302 RKIESW 307
>gi|257092407|ref|YP_003166048.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257044931|gb|ACV34119.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 417
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 58/242 (23%), Positives = 100/242 (41%), Gaps = 8/242 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
++ + G + E AS+TK+MTA VV L PITIS
Sbjct: 166 AVHSGSALVVPQDGGEPLYEKNAHAVVPIASITKVMTAMVVLDSQP----NLQAPITISD 221
Query: 85 NASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ +Y S S + GS + + AL L ++ S N A A+ FV MN +
Sbjct: 222 DDVDYLRGSRSRLQVGSVIPRETALLLALMSSENRAANALGRHYPGGLTAFVAAMNRKAA 281
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK--YP 201
+LG++ +HF + G+ + T +++ + + EI G++ +
Sbjct: 282 SLGMTRSHFEDPTGLNSNNVSTAHDLARMVAAAHRYPLIREFSTTSGARAEINGRELGFH 341
Query: 202 NTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NTN V + G KTG+ +G +V A D+ ++ V+L + + TR + +
Sbjct: 342 NTNQLVSSPTWEIGLSKTGYIQEAGKCLVMQARVADKPVVIVLLDSAGKQTRIGDANRIK 401
Query: 261 SM 262
Sbjct: 402 RW 403
>gi|330444090|ref|YP_004377076.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pecorum E58]
gi|328807200|gb|AEB41373.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pecorum E58]
Length = 429
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 69/357 (19%), Positives = 121/357 (33%), Gaps = 42/357 (11%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + S+ F S T L +TG V+ D PAS+TK+ TA +
Sbjct: 12 LWLCSSCFGAHSFPSTRGTSTAIL-HADTGKVLYGENLDLRIYPASMTKIATALFILQRH 70
Query: 70 KEKKAMLTTP-----------------ITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
E L T + E + ++ + L+
Sbjct: 71 PEVLERLVTVTRDAIVSITPQAKKQSGYRNPPHWLETDGVTIQLQAKEEVSGWDLFHALL 130
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ SAND A +A + C + K ++ +N LG THF N HG+ HYTTARD+A
Sbjct: 131 LSSANDAANVLAVACCGSVAKCMEQINLFLSELGCKHTHFNNPHGLHHPNHYTTARDLAT 190
Query: 173 LSWRIKTDFP-------QYMHYFQIKGLEIKGKKYPNT---NWAVGTFLGADGMKTGFTC 222
+ + + + N ++ + A G KTG T
Sbjct: 191 IMHHALQETKFQQVIKTTHYTMAATNLSAERSLTTTNKLMLPRSMYYYPAALGGKTGTTK 250
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
++G N+V +A + ++ +I V G + +L F+ RK + + +
Sbjct: 251 SAGKNLVMAAQKNNRKIITVTTGYSGPVGELYQDVIALCEALFHEPLLRKYLISPKESYT 310
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD-------KESHFIDFEKITLLKN 331
+ + + E + Y+ E + + + LL
Sbjct: 311 LKIKNL------GNITIPLSEGVYYDFYASEKDPMLSVSFLPTTQPLPIHRGELLGE 361
>gi|238923987|ref|YP_002937503.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
33656]
gi|238875662|gb|ACR75369.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
33656]
Length = 384
Score = 112 bits (279), Expect = 8e-23, Method: Composition-based stats.
Identities = 55/276 (19%), Positives = 107/276 (38%), Gaps = 19/276 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ + + A ++ L D + I AS TKL+T
Sbjct: 57 KKSVFMAAENTVAKNTDKAVNEPRLHAVSAALYDADDETFIYGRNMRDSMANASTTKLLT 116
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
V + +TIS+NA+ P G++ + + L ++++S ND A
Sbjct: 117 CIVALEKSD-----INDTVTISQNAASQPAVKLGLVAGNSYNMKDLLYGMMLESFNDCAY 171
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRI 177
AIAE + + + F + MN + +G T+F+ +G+ H++TA D+ ++
Sbjct: 172 AIAEHVGGSTEGFAKLMNEKANEIGCLGTYFITPNGLDAENDISFHHSTAGDLCVIMSYC 231
Query: 178 KTDFPQYMHYFQIKGLEI-------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
P+ + +I + N N + KTGFT +G+ VA
Sbjct: 232 AWKSPKSTQFLEITQTMQYTFETEEGKMVFNNHNRLLTETDYCISGKTGFTAKAGYCYVA 291
Query: 231 SAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMG 263
+ + + + +LG ++N + + SL+
Sbjct: 292 AVEKDGRRMCLSLLGCGWPNNKNYKWADAKSLVEYA 327
>gi|63256357|gb|AAY37453.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Pseudomonas
syringae pv. syringae B728a]
gi|330973126|gb|EGH73192.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 294
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 54/253 (21%), Positives = 94/253 (37%), Gaps = 8/253 (3%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ ++D T V+ + PD AS+TKLMTA VV +
Sbjct: 12 AVLSRDPSNLHLASGSAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQPMDE 71
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
++ I+ + S K GS M + L + ++ S N A ++A S F
Sbjct: 72 VIPVNISQTPE---MKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAF 128
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
+ MN +K LG+ T ++ G+ + T ++ K + + K +
Sbjct: 129 ILAMNAKAKALGMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKYPLLSELSTTEQKTVT 188
Query: 195 IKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ Y NT+ V KTGFT +G +V ++ + VIL A +
Sbjct: 189 FRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGK 248
Query: 250 NTRNKVSASLLSM 262
T ++ +
Sbjct: 249 YTHFADASRIRKW 261
>gi|171463757|ref|YP_001797870.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Polynucleobacter necessarius subsp. necessarius STIR1]
gi|171193295|gb|ACB44256.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Polynucleobacter necessarius subsp. necessarius STIR1]
Length = 338
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 57/241 (23%), Positives = 99/241 (41%), Gaps = 8/241 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
K +++ +T V E P AS+TKLMTA VV K L I I+
Sbjct: 88 NLKSSVAMVVNQDTKEVYFEKNPSVSLPIASITKLMTAMVVLDS----KLPLDEAIVINA 143
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ ++ G+ +T + AL L ++ S N A + + FV MN +K
Sbjct: 144 DDIHIYRTSRLAG-GTVLTREEALLLALMSSENRAAYTLGRNYPGGIPAFVDAMNRKAKE 202
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ--IKGLEIKGKKYPN 202
LG++ +HF + G++ T +L+ + + + + + +K+ N
Sbjct: 203 LGMNHSHFADPTGLMSENVATAEDLTRMLNAAYQYKMIREFSTWPDLTMVIAKRPQKFLN 262
Query: 203 TNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
TN V + G KTGF A+G +V A + L+ V L ++ +R + +
Sbjct: 263 TNRLVRSGDMNIGLQKTGFINAAGKCLVMQARVNNTPLLLVFLDSVGTQSRFADAVRVRD 322
Query: 262 M 262
Sbjct: 323 W 323
>gi|161486731|ref|YP_235491.2| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae
B728a]
Length = 313
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 54/253 (21%), Positives = 94/253 (37%), Gaps = 8/253 (3%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ ++D T V+ + PD AS+TKLMTA VV +
Sbjct: 31 AVLSRDPSNLHLASGSAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQPMDE 90
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
++ I+ + S K GS M + L + ++ S N A ++A S F
Sbjct: 91 VIPVNISQTPE---MKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAF 147
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
+ MN +K LG+ T ++ G+ + T ++ K + + K +
Sbjct: 148 ILAMNAKAKALGMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKYPLLSELSTTEQKTVT 207
Query: 195 IKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ Y NT+ V KTGFT +G +V ++ + VIL A +
Sbjct: 208 FRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGK 267
Query: 250 NTRNKVSASLLSM 262
T ++ +
Sbjct: 268 YTHFADASRIRKW 280
>gi|300310973|ref|YP_003775065.1| D-alanyl-D-alanine-endopeptidase [Herbaspirillum seropedicae SmR1]
gi|300073758|gb|ADJ63157.1| D-alanyl-D-alanine-endopeptidase (penicillin-binding) protein
[Herbaspirillum seropedicae SmR1]
Length = 366
Score = 112 bits (279), Expect = 9e-23, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 98/248 (39%), Gaps = 8/248 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ ++D V+ E AS+TKLMTA VV + + +LT
Sbjct: 103 LTPDPLALRSNVALVIDQANSQVLFEKNSGVALPIASVTKLMTALVVVEARQNMEEVLTV 162
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ S+S + G+T++ D+ L + ++ S N A A+ + FV M
Sbjct: 163 TD---DDVDREKHSSSRLRVGATLSRDDMLHIALMSSENRAASALGRNYPGGLPAFVAAM 219
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EI 195
N +++LG+ T ++++ G+ + +ARD+A L + K +
Sbjct: 220 NAKARSLGMMDTRYVDSTGL-SSQNVASARDLAKLVVAAYNYPIIRQYSTDPKYMVEPSG 278
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+Y ++N G KTGF +G +V + ++ V L + R +
Sbjct: 279 HALQYNSSNRLTSNKEWDIGLQKTGFINEAGHCLVMYTRIEGRPIVMVFLDSKGRLSHVG 338
Query: 255 VSASLLSM 262
+A +
Sbjct: 339 DAARMRKW 346
>gi|253732917|ref|ZP_04867082.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus TCH130]
gi|253729097|gb|EES97826.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus TCH130]
Length = 414
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 77/338 (22%), Positives = 136/338 (40%), Gaps = 38/338 (11%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 40 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 99
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 100 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 159
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 160 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 219
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 220 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 279
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYII-----KDFYQQNLSNEV-----PNISEEVCT 298
RN + +L+ F K ++ K +Y +N +V ++
Sbjct: 280 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVENDLYDVLPSDFSKKDYKLVV 339
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
++ + KD ++ K + K K
Sbjct: 340 EDGKVHADYPREFINKDYGPPTVEVHKPIIQKANTVAK 377
>gi|163857870|ref|YP_001632168.1| D-alanyl-D-alanine carboxypeptidase [Bordetella petrii DSM 12804]
gi|163261598|emb|CAP43900.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella petrii]
Length = 385
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 102/244 (41%), Gaps = 10/244 (4%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ E + + D T V+ + AS++KLMTA VV + + +
Sbjct: 134 AEIEALRSSTAYVQDLETSTVLFAKNDNVVRPIASISKLMTALVVVDANQP----MDQML 189
Query: 81 TISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
I+ + + ++S G+ ++ + L L ++ S N A A+ + FV+ MN
Sbjct: 190 EITDDDVDTLKHTSSRLVVGTRLSRGDMLHLALMSSENRAAHALGRNYPGGLPAFVEAMN 249
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE---IK 196
+ ++ LG+++THF+ G+ + ++ RD+A L + + + +
Sbjct: 250 HKARALGMTSTHFIEPTGL-SSQNVSSPRDLARLLRAASQRPLIHRYSTDDQYEVDVANR 308
Query: 197 GKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ + NTN V KTG+ +G +V A + + V+L + + +R
Sbjct: 309 TQVFRNTNLLVRKPDWDIKVSKTGYINEAGECLVMLARINGRDVAMVLLDSQGKLSRIGD 368
Query: 256 SASL 259
+ L
Sbjct: 369 AVRL 372
>gi|82408083|pdb|2BCF|A Chain A, Crystal Structure Of A Evolved Putative Penicillin-Binding
Protein Homolog, Rv2911, From Mycobacterium Tuberculosis
Length = 276
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/250 (20%), Positives = 91/250 (36%), Gaps = 14/250 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + D ++G V+A + PAS K++ A V L + +
Sbjct: 15 PDGPAQTWIVADLDSGQVLAGRDQNVAHPPASTIKVLLALVALDE-----LDLNSTVVAD 69
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ + K G + T+ L L++ S ND A +A + V N +
Sbjct: 70 VADTQAECNCVGVKPGRSYTVRQLLDGLLLVSGNDAANTLA-HXLGGQDVTVAKXNAKAA 128
Query: 144 NLGLSATHFMNAHGVVQHGHY--TTARDMAILSWRIKTDF---PQYMHYFQIKGLEIKGK 198
LG ++TH G+ G +TA D+ ++ + + +
Sbjct: 129 TLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRAAXANPVFAQIIAEPSAXFPSDDGEQ 188
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKV 255
N + + + GA G KTG+T A+ V +A +G + L+ T
Sbjct: 189 LIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAARGGRRLVIAXXYGLVKEGGPTYWDQ 248
Query: 256 SASLLSMGFY 265
+A+L GF
Sbjct: 249 AATLFDWGFA 258
>gi|222150410|ref|YP_002559563.1| penicillin-binding protein 4 [Macrococcus caseolyticus JCSC5402]
gi|222119532|dbj|BAH16867.1| penicillin-binding protein 4 [Macrococcus caseolyticus JCSC5402]
Length = 429
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 63/364 (17%), Positives = 141/364 (38%), Gaps = 50/364 (13%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN------------KLPYYTLLDTNTGHVIAENYPDH 49
R F I L + ++ G V+ + D
Sbjct: 6 RVFSFSICFLFLFSYKALAKEPYEIANDAGNYIDASYNPKGTIVIAQKNGQVLYSDDADT 65
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLD 105
W AS++KLMT Y++ + + + T + ++ SN+ + + T+D
Sbjct: 66 KWPLASMSKLMTLYLLLQEMDKGEITFNTKVKVTDKFYNISKLPALSNNNLRLNAVYTVD 125
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---- 161
+ +++ S+N ++ + K + +F+ MN +K LG+++T F N G +
Sbjct: 126 ELMPIMLTNSSNAATYMLSSLVTKNDSEFIDKMNQEAKRLGMNSTKFYNPVGAPNNLLNE 185
Query: 162 ----------GHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKGKKYPNTNWA 206
+ ++A+D AIL + +++P + Y + +K I + + N +
Sbjct: 186 YKAKKYPQNEDNISSAKDYAILCQHLVSEYPGILKYTKRVDVTVKKGTIDEETFHTYNHS 245
Query: 207 ----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------RNKVS 256
+ G DG+KTG + +GFN + + D +I V++G RN ++
Sbjct: 246 LEGAKLGYKGVDGLKTGSSDTAGFNTAITGKKNDMRIIQVMMGVESWYDPPAEFNRNIMA 305
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
+++ + +K + + ++ + + ++ K+ + + Q K+ K
Sbjct: 306 NAIMDEVYNEYAYKKVLAKGVHT-----INGQELYVHSDLYDIVKKDVKGSFQFKDGKLS 360
Query: 317 ESHF 320
+
Sbjct: 361 YHYK 364
>gi|167574898|ref|ZP_02367772.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
oklahomensis C6786]
Length = 373
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 98/244 (40%), Gaps = 8/244 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + ++D +TG + + AS+TKLMTA VV L
Sbjct: 113 TSRPSGLRSNIAYMIDPHTGETLFDRNSQSVVPIASVTKLMTAMVVLDSKAP----LEER 168
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + ST++ D+ L + ++ S N A A++ + FV M
Sbjct: 169 IEVTDDDRDQDKFTGSRLAIGSTLSRDDMLHIALMASENRAAAALSRYYPGGRQAFVDAM 228
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +++LG+ THF N G+ ++ T ++ + + ++ +
Sbjct: 229 NQKARSLGMIDTHFENPTGLSKYNVSTARDLAKMVEAAYQYPLIRQYSTDLKYEVDTGRR 288
Query: 199 K--YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 289 TLYYHSTNILLRDEDWDIGVQKTGYIRESGICLVMQTTIDGREVVMVLLDSAGRHSDFFD 348
Query: 256 SASL 259
+A L
Sbjct: 349 AARL 352
>gi|167565134|ref|ZP_02358050.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
oklahomensis EO147]
Length = 373
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/244 (20%), Positives = 98/244 (40%), Gaps = 8/244 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + ++D +TG + + AS+TKLMTA VV L
Sbjct: 113 TSRPSGLRSNIAYMIDPHTGETLFDRNSQSVVPIASVTKLMTAMVVLDSKAP----LEER 168
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + ST++ D+ L + ++ S N A A++ + FV M
Sbjct: 169 IEVTDDDRDQDKFTGSRLAIGSTLSRDDMLHIALMASENRAAAALSRYYPGGRQAFVDAM 228
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +++LG+ THF N G+ ++ T ++ + + ++ +
Sbjct: 229 NQKARSLGMIDTHFENPTGLSKYNVSTARDLAKMVEAAYQYPLIRQYSTDLKYEVDTGRR 288
Query: 199 K--YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 289 TLYYHSTNILLRDEDWDIGVQKTGYIRESGICLVMQTTIDGREVVMVLLDSAGRHSDFFD 348
Query: 256 SASL 259
+A L
Sbjct: 349 AARL 352
>gi|50513810|pdb|1TVF|A Chain A, Crystal Structure Of Penicillin-Binding Protein 4 (Pbp4)
From Staphylococcus Aureus
gi|50513811|pdb|1TVF|B Chain B, Crystal Structure Of Penicillin-Binding Protein 4 (Pbp4)
From Staphylococcus Aureus
Length = 369
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 43 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 102
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 103 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 162
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 163 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 222
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 223 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 282
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 283 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 322
>gi|320324554|gb|EFW80631.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. glycinea
str. B076]
gi|320328927|gb|EFW84926.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 311
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 13/265 (4%)
Query: 7 IIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ L+N L+ + ++D T V+ + PD AS+TKLMTA
Sbjct: 18 ALSTTTLANESAVLNRDPSNLHLASGSAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAM 77
Query: 64 VVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + + I ++ E S K GS M + L + ++ S N A +
Sbjct: 78 VVLDAKQ----SMDEVIPVNISQTPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAAS 133
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A S F+ MN +K LG+ T ++ G+ + T ++ K
Sbjct: 134 LAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKYPML 193
Query: 183 QYMHYFQIKGLEIKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQ 237
+ + K + + Y NT+ V KTGFT +G +V ++
Sbjct: 194 SELSTTEQKMVTFRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANR 253
Query: 238 SLIAVILGALDRNTRNKVSASLLSM 262
+ VIL A + T ++ +
Sbjct: 254 PVSVVILDAFGKYTHFADASRIRKW 278
>gi|289649634|ref|ZP_06480977.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aesculi
str. 2250]
Length = 313
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 13/265 (4%)
Query: 7 IIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ L+N L+ + ++D T V+ + PD AS+TKLMTA
Sbjct: 20 ALSTTTLANESAVLNRDPSNLHLASGSAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAM 79
Query: 64 VVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + + I ++ E S K GS M + L + ++ S N A +
Sbjct: 80 VVLDAKQ----SMDEVIPVNISQTPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAAS 135
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A S F+ MN +K LG+ T ++ G+ + T ++ K
Sbjct: 136 LAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKYPML 195
Query: 183 QYMHYFQIKGLEIKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQ 237
+ + K + + Y NT+ V KTGFT +G +V ++
Sbjct: 196 SELSTTEQKTVTFRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANR 255
Query: 238 SLIAVILGALDRNTRNKVSASLLSM 262
+ VIL A + T ++ +
Sbjct: 256 PVSVVILDAFGKYTHFADASRIRKW 280
>gi|302540899|ref|ZP_07293241.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
hygroscopicus ATCC 53653]
gi|302458517|gb|EFL21610.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptomyces
himastatinicus ATCC 53653]
Length = 319
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 19/259 (7%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
LLD + + PD AS+TKLMTA VV T
Sbjct: 47 PSGIAAKGAYLLDNSANKKLWSKSPDTKRQMASITKLMTAVVVLDTRGVNLNKKVTVKKA 106
Query: 83 SKNASEYPPSN-STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL------CKTEKKFV 135
+ + + K+G +T+ L +++ S D A+A+A++ K K F+
Sbjct: 107 YLDYIRTSGGSAADLKQGDKLTVKQLLYGMLLPSGCDAAMALADTFGSGSTTAKRTKSFI 166
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTARDMAILSWRIKTDFPQYMHYFQI---- 190
MN + LG++ T + + G+ HG +YTTARD++ L+ + +
Sbjct: 167 SKMNKKADALGMTKTQYDSFDGISTHGANYTTARDLSKLARHALGNATLRTVVKSVGTEQ 226
Query: 191 ----KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ + ++N +G++ GA G+KTG A+G IV +A + ++++ V+LG
Sbjct: 227 KAPAANGRTRTYYWNSSNKLLGSYNGAIGIKTGTGTAAGKCIVFAAKRNGRTVVGVLLG- 285
Query: 247 LDRNTRNKVSASLLSMGFY 265
+ R + +L F
Sbjct: 286 --DSKRYPDAKKMLDWAFN 302
>gi|256393602|ref|YP_003115166.1| serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila
DSM 44928]
gi|256359828|gb|ACU73325.1| Serine-type D-Ala-D-Ala carboxypeptidase [Catenulispora acidiphila
DSM 44928]
Length = 419
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/260 (21%), Positives = 99/260 (38%), Gaps = 10/260 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ A + + Y + D TG ++AE P PAS K++TA + L +
Sbjct: 44 AASVGSAPSVDVASYVVADYATGQILAEQSPHRELYPASTLKVLTADTLIPRLDPAR--- 100
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T + A+E S G T ++ + + V+SAND +A L V
Sbjct: 101 TVTPKAADFAAEPDGSVVGMTAGVTYSIADLWRATFVESANDAVAELA-HLSGGLSATVA 159
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR----IKTDFPQYMHYFQIKG 192
M +++LG T ++A G Q G T+A D+AI + + G
Sbjct: 160 AMRQEARSLGAHDTTVLDADGYDQDGQLTSAYDLAIFARAGLRLPAFRAYCDLKQTTFPG 219
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ + + ++ G G+K G T +G V +A + ++I ++ L
Sbjct: 220 PKGTTLTLVGHDPMIKSYPGMIGIKGGLTTKAGHTYVGAATRDGHTVIETLM--LGGTDV 277
Query: 253 NKVSASLLSMGFYNKTDRKK 272
+A L+ G K
Sbjct: 278 FDQAARLMDWGLQADGKVKP 297
>gi|213619028|ref|ZP_03372854.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 272
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 59/237 (24%), Positives = 98/237 (41%), Gaps = 10/237 (4%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D NT VI N+PD AS+TKLMTA VV +L I+ +
Sbjct: 1 MIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLPLDEILKVDISQTPE---MKG 57
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S + S ++ N L L ++ S N A ++A F++ MN +K LG++ T
Sbjct: 58 VYSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTR 117
Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
F+ G+ + +TARD+ L + + + NTN
Sbjct: 118 FVEPTGL-SIHNVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNHL 176
Query: 207 VGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
V KTGFT A+G +V + ++ + V++ A + T ++ L +
Sbjct: 177 VYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW 233
>gi|228999784|ref|ZP_04159358.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
gi|229007339|ref|ZP_04164938.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
gi|228753944|gb|EEM03383.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
gi|228759991|gb|EEM08963.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
Length = 273
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 63/269 (23%), Positives = 109/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + S Y +D NTG V+ + PAS+ K+MT
Sbjct: 9 FTSMIFFSYTKRQKDVRSNQPDITGKYGVTIDANTGEVLYGKREEERSYPASVAKMMTTI 68
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE ITI++NA + + + G + D ALKL+++ SA+ IA
Sbjct: 69 LLLENVKE-----DEEITITENAIKTESQSAKIKLRAGEKLKRDEALKLMLIISADPIAE 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + +++KFV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 124 SIAEHIAGSKEKFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYP 183
Query: 182 PQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + + K N A G K+G + + +V + +
Sbjct: 184 IVLEYMNTTRTTLHTSQRAPKIANYGREELYNDPYAIGSKSGLSALGQYTVVTVDEKDGK 243
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 244 RVINVVL-SSTRTQLYPDTKKMAHYAFKQ 271
>gi|257455273|ref|ZP_05620508.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Enhydrobacter
aerosaccus SK60]
gi|257447235|gb|EEV22243.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Enhydrobacter
aerosaccus SK60]
Length = 364
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 59/247 (23%), Positives = 102/247 (41%), Gaps = 18/247 (7%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
++D TG+ I E D AS++KLMTA VV A + +TIS
Sbjct: 115 ANSKGALVVDALTGNTIYEKNADIARPIASISKLMTAVVVAESG----ANMGETLTISSL 170
Query: 86 ASEYPPS--NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ P + K G + L ++++KS N A A+A + F+ MN ++
Sbjct: 171 DFKTPKQSGSDRLKVGDQLNRAEMLLMMMMKSENPAAKALARTDPMGYDNFISRMNQKAR 230
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--- 200
LG++ T + + G+ + + RD+AIL+ + +
Sbjct: 231 ELGMTQTRYYDPSGLDS-RNVASPRDLAILARY-AYKHNLISQFSTTPSRQFGVNNINSG 288
Query: 201 ------PNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+TN+ V L G KTG+ +G ++ G++ I V+LGA D TR
Sbjct: 289 YRTVAARSTNYMVRDGLYNIGLSKTGYIREAGNCVLFETNVGNRPAIVVLLGANDSKTRW 348
Query: 254 KVSASLL 260
+ +++
Sbjct: 349 NDAENII 355
>gi|289624340|ref|ZP_06457294.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|298487139|ref|ZP_07005189.1| Murein-DD-endopeptidase [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|298158382|gb|EFH99452.1| Murein-DD-endopeptidase [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|330868676|gb|EGH03385.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330891159|gb|EGH23820.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. mori
str. 301020]
gi|330985252|gb|EGH83355.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331008609|gb|EGH88665.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 311
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 58/265 (21%), Positives = 101/265 (38%), Gaps = 13/265 (4%)
Query: 7 IIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ L+N L+ + ++D T V+ + PD AS+TKLMTA
Sbjct: 18 ALSTTTLANESAVLNRDPSNLHLASGSAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAM 77
Query: 64 VVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + + I ++ E S K GS M + L + ++ S N A +
Sbjct: 78 VVLDAKQ----SMDEVIPVNISQTPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAAS 133
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A S F+ MN +K LG+ T ++ G+ + T ++ K
Sbjct: 134 LAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKYPML 193
Query: 183 QYMHYFQIKGLEIKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQ 237
+ + K + + Y NT+ V KTGFT +G +V ++
Sbjct: 194 SELSTTEQKTVTFRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANR 253
Query: 238 SLIAVILGALDRNTRNKVSASLLSM 262
+ VIL A + T ++ +
Sbjct: 254 PVSVVILDAFGKYTHFADASRIRKW 278
>gi|229823246|ref|ZP_04449315.1| hypothetical protein GCWU000282_00544 [Catonella morbi ATCC 51271]
gi|229787412|gb|EEP23526.1| hypothetical protein GCWU000282_00544 [Catonella morbi ATCC 51271]
Length = 405
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/280 (18%), Positives = 109/280 (38%), Gaps = 29/280 (10%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ + +P + T Y ++D +T V+ E + P+ AS++K+M+ Y+ + ++
Sbjct: 51 FTMPSGYPEELNSLTEDTRSYVVIDQDTHKVLMEREGNKPYPIASMSKIMSVYLTYKAIE 110
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFK-----KGSTMTLDNALKLLIVKSANDIAVAIAE 125
E K L I + + N+ + T+ + L +++ S ND +
Sbjct: 111 EGKIKLDDKIKVPEAIVRDFTDNAELSNAGLVTDAEYTVQDLLYGIMLASGNDATTLLMS 170
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------------QHGHYTTARDM 170
+ +E++ V + G+ F G + +A D+
Sbjct: 171 HIYGSEQEAVAAIRRQLDEWGIENYEFYTTSGAPNKYLPESYWIEGSTKDSQNKMSAADV 230
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNW----AVGTFLGADGMKTGFT 221
A+++ I +PQ + + + K N N A G G+K+G+T
Sbjct: 231 ALMAQYITEKYPQILELSSAREYTMAKDSDHPIKMANNNLLLEGAQYGRPGVTGLKSGYT 290
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+G V + + + +IAV++G + + + + LL
Sbjct: 291 DEAGKCFVTTTTENGRKMIAVVMGVQEPYSSYEETKILLD 330
>gi|239930109|ref|ZP_04687062.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
gi|291438449|ref|ZP_06577839.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
gi|291341344|gb|EFE68300.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
Length = 299
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 62/276 (22%), Positives = 106/276 (38%), Gaps = 16/276 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+IA L + A + +++ G + D + S TK+MTA VV
Sbjct: 23 VIASGFLYAAPAQAAAAPSIVAKGGFVMNDANGKSLYTKAADTRRSTGSTTKIMTAKVVL 82
Query: 67 SFLKEK-KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+ A +T + S S++ G +T+ L L++ S D A A+A+
Sbjct: 83 AQKNLNLDAKVTIQMAYSDYIVSKNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALAD 142
Query: 126 SLCK------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
K F+ MN +K LGL THF + G+ +Y+T RD+ ++
Sbjct: 143 KFGTGSTRSARVKSFIGKMNAEAKKLGLKNTHFDSFDGIGNGKNYSTPRDLTKIASSAMK 202
Query: 180 DFPQYM---------HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
+ G + NTN + + G G+KTG S + +V
Sbjct: 203 NSTFRTIVKTKKYTAKTTTKTGSTRTMAPWTNTNTLLSNYSGTIGVKTGSGSTSKYCLVF 262
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+A + +++I +L + R + LL GF
Sbjct: 263 AATRNGKTVIGTVLTSSSAAQRETDAKKLLGYGFSK 298
>gi|71736880|ref|YP_274768.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557433|gb|AAZ36644.1| penicillin-binding protein 7 [Pseudomonas syringae pv. phaseolicola
1448A]
Length = 311
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 57/265 (21%), Positives = 101/265 (38%), Gaps = 13/265 (4%)
Query: 7 IIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ L+N L+ + ++D T V+ + PD AS+TKLMTA
Sbjct: 18 ALSTTTLANESAVLNRDPSNLHLASGSAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAM 77
Query: 64 VVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
VV + + I ++ E S K GS M + L + ++ S N A +
Sbjct: 78 VVLDAKQ----SMDEVIPVNISQTPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAAS 133
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A S F+ MN +K LG+ T ++ G+ + T ++ K
Sbjct: 134 LAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKYPML 193
Query: 183 QYMHYFQIKGLEIKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQ 237
+ + K + + Y NT+ + KTGFT +G +V ++
Sbjct: 194 SELSTTEQKTVTFRKPTYTLGFSNTDHLLRKDNWDIKLTKTGFTNQAGHCLVLLTSMANR 253
Query: 238 SLIAVILGALDRNTRNKVSASLLSM 262
+ VIL A + T ++ +
Sbjct: 254 PVSVVILDAFGKYTHFADASRIRKW 278
>gi|225419739|ref|ZP_03762042.1| hypothetical protein CLOSTASPAR_06077 [Clostridium asparagiforme
DSM 15981]
gi|225041629|gb|EEG51875.1| hypothetical protein CLOSTASPAR_06077 [Clostridium asparagiforme
DSM 15981]
Length = 455
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 60/254 (23%), Positives = 99/254 (38%), Gaps = 22/254 (8%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + D + I PAS TK+MTA V + L +T+++
Sbjct: 203 SVTSEAAAVFDLDDCSTIYSKNAFERLYPASTTKVMTALVAIKY-----GNLADEVTVTE 257
Query: 85 NASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+A + K G +T++ L L++ S ND AIA + + +KF MN +
Sbjct: 258 DAVITEAGATLAGIKPGDKLTMEQLLYGLMLPSGNDAGAAIAVHMAGSIEKFADMMNEEA 317
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG---------- 192
+ LG + THFMN HG+ HYTTA D+ ++
Sbjct: 318 RRLGATGTHFMNPHGLNDPNHYTTAYDLYLIFNEALKQPMFRKITGSTAYTANYRGADGK 377
Query: 193 ----LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGAL 247
G + L G KTG T A+G+ +V ++ D+ I+V++ A
Sbjct: 378 TVSKTWKGGNWFMTGERKTPDGLTVFGGKTGTTKAAGYCLVMASRDDEDRGYISVVMKAD 437
Query: 248 DRNTRNKVSASLLS 261
R +++S
Sbjct: 438 SRPGLYDNMTNIIS 451
>gi|225028474|ref|ZP_03717666.1| hypothetical protein EUBHAL_02751 [Eubacterium hallii DSM 3353]
gi|224954224|gb|EEG35433.1| hypothetical protein EUBHAL_02751 [Eubacterium hallii DSM 3353]
Length = 543
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 62/271 (22%), Positives = 96/271 (35%), Gaps = 15/271 (5%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
A + Y ++D +G V+ + PAS KLMTA V + T
Sbjct: 23 AKVKAPKKQCHAYVVMDAGSGEVLFGQDANKKIYPASTAKLMTAIVCVEKGNVNSVIKTK 82
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ + + G T + L + ++ SA D ++A + ++K V+ M
Sbjct: 83 SDVVYRTTPGTY--SLGIGAGVNYTFKDLLHMSLMSSAADATDSLAVGVFGSKKACVEAM 140
Query: 139 NNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
N K LGL THF N G + Y +A++MA + +
Sbjct: 141 NEKCKELGLKKTHFDNPVGSDIGAGYNETYASAKEMAKICRYAMAIPLIRSAVSKAHYST 200
Query: 195 IKGKKYPN-TNWAVGTFLG-------ADGMKTGFTCASGFNIVAS-AIQGDQSLIAVILG 245
KG Y N TNW + G K+G T A+G +A+ A LI G
Sbjct: 201 QKGGMYVNTTNWFLKGMAYYDRDTYKIIGSKSGTTNAAGHVFIATAADYKGHELICAYFG 260
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
+ + + SL F N K
Sbjct: 261 NVSKESTFASIRSLFDYAFNNYKKGKLTLTP 291
>gi|167838920|ref|ZP_02465697.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis MSMB43]
Length = 349
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 8/244 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ ++D +TG + + AS+TKLMTA VV L P
Sbjct: 89 TPRPFGLRSNIVYMVDQHTGEALFDRNSQSVAPIASVTKLMTAMVVLDSKAP----LDEP 144
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + ST+T D+ L + ++ S N A A++ FV M
Sbjct: 145 IEVTDDDRDQDKFTGSRLAIGSTLTRDDMLHIALMASENRAAAALSRYYPGGRDAFVDAM 204
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +++LG+ THF N G+ +H T + ++ + + ++ +
Sbjct: 205 NQKARSLGMVDTHFENPTGLSKHNVSTARDLVKMVEAAYQYPLIRQYSTDLKYDVDTGLR 264
Query: 199 K--YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 265 TLYYHSTNILLRDDDWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFFD 324
Query: 256 SASL 259
+A L
Sbjct: 325 AARL 328
>gi|331268991|ref|YP_004395483.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
BKT015925]
gi|329125541|gb|AEB75486.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum
BKT015925]
Length = 444
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 75/371 (20%), Positives = 128/371 (34%), Gaps = 43/371 (11%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH-PWNPASLTKLMTAYVVF 66
I ++ + F A ++D TG VI D P PAS TKL+TA ++
Sbjct: 14 IFLSFCTTAFAANLNAPNVVGKSAIVVDAKTGEVIYAKDVDTSPMYPASTTKLLTALLLA 73
Query: 67 SFLKEKKA-MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+ T + + K G M+ D+A+K L++ SANDIA IA+
Sbjct: 74 ENKQPTDILTYTDGASKQPEYTLRSFLKGQLKVGDKMSADDAMKGLLLHSANDIAYMIAD 133
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--HGHYTTARDMAILSWRIKTDFPQ 183
++ + F + MN+ K LGL+ THF+ +G+ HYT+A D++++ +
Sbjct: 134 NVAGNTENFAKMMNDKIKKLGLTHTHFVTPNGLDNGITDHYTSAYDLSVIGRAAYENEWV 193
Query: 184 YMHYFQIKGL------------------------EIKGKKYPNTNWAVGTFLGADGMKTG 219
K K N + G KTG
Sbjct: 194 RKTMNLKKDKIELTNGVLGYPENRNKLLGKTLDSNFNSKTGINIKDVPVSDAVCIGGKTG 253
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNK--------- 267
+T +G +VA + + LI V++ + + A ++ + K
Sbjct: 254 YTSKAGRCLVAMFNKDGRILIGVVMKSAYDKNDTYVFNDMAKTINWAYSAKQVALYKADT 313
Query: 268 --TDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+K F N + E+V E T+ + K
Sbjct: 314 ELKTLSIKYRPLKFFGPTKTINVPVTVKEDVTYYDNEFNKAETKTEFELPDIGIGH-LSK 372
Query: 326 ITLLKNKITKK 336
+ + K+
Sbjct: 373 NKSIGKLVLKQ 383
>gi|306973781|ref|ZP_07486442.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu010]
gi|307081490|ref|ZP_07490660.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu011]
gi|308356859|gb|EFP45710.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu010]
gi|308360815|gb|EFP49666.1| penicillin-binding protein dacB1 [Mycobacterium tuberculosis
SUMu011]
Length = 307
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 55/239 (23%), Positives = 93/239 (38%), Gaps = 12/239 (5%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+ D ++G VIA P PAS+ K++ A L + + + + +
Sbjct: 1 MADLDSGAVIAARDPHGRHRPASVIKVLVAM-----ASINTLTLNKSVAGTADDAAVEGT 55
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
G T T++ L L++ S ND A A+A L + +N + LG T
Sbjct: 56 KVGVNTGGTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAAL-EKINLLAAKLGGRDTRV 114
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPNTNWAV 207
G+ G T+A D+ + + + + G + N N +
Sbjct: 115 ATPSGLDGPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLL 174
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GALDRNTRNKVSASLLSMGFY 265
+ GA G KTG+T +G V +A + + L+ V+L G + +A LL GF
Sbjct: 175 YNYPGALGGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFN 233
>gi|169827425|ref|YP_001697583.1| hypothetical protein Bsph_1859 [Lysinibacillus sphaericus C3-41]
gi|168991913|gb|ACA39453.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 292
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 61/242 (25%), Positives = 101/242 (41%), Gaps = 12/242 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L++ + V+ + + PASLTK+MT V + + + I
Sbjct: 39 NLYSSNAILVNLDDNKVLIDKNSEEVIYPASLTKMMTVLVAIEQIPNLQEEIVLGNNIFN 98
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
N E S + F +TL++ L ++ S + ++ +AE + +E+KFV MN ++
Sbjct: 99 NLYEANASLAGFLPNEKLTLEDLLYGSMLPSGAEASIGLAEYIAGSERKFVNLMNEKAQQ 158
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL----------- 193
LG+ THFMN G+ HYTT +DM++L T+ Y +
Sbjct: 159 LGMKNTHFMNTTGLHHSDHYTTVKDMSLLLQYALTNDEFRQVYTAERYSIKPTNRHPEGI 218
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K + N G KTG+T +G + + A Q I V +GA N+R
Sbjct: 219 TFTNKMFQNMTTRALPGGEILGGKTGYTDDAGLCLASLATINGQEYILVTVGAEG-NSRT 277
Query: 254 KV 255
+
Sbjct: 278 EQ 279
>gi|320140025|gb|EFW31886.1| beta-lactamase [Staphylococcus aureus subsp. aureus MRSA131]
gi|320141884|gb|EFW33712.1| beta-lactamase [Staphylococcus aureus subsp. aureus MRSA177]
Length = 414
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 40 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 99
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 100 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 159
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 160 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 219
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 220 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 279
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 280 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 319
>gi|282915977|ref|ZP_06323742.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus D139]
gi|282320273|gb|EFB50618.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus D139]
Length = 431
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 118/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAMKVSKNTSNFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINDKKYYVE 336
>gi|325266278|ref|ZP_08132957.1| D-alanyl-D-alanine carboxypeptidase [Kingella denitrificans ATCC
33394]
gi|324982240|gb|EGC17873.1| D-alanyl-D-alanine carboxypeptidase [Kingella denitrificans ATCC
33394]
Length = 317
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/240 (22%), Positives = 100/240 (41%), Gaps = 11/240 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK- 84
+++ NTG ++ + + + AS++KLM A VV + + ITI++
Sbjct: 74 LNAQAAAIMNANTGQILFQKNMNSVRSIASISKLMAAMVVLDA----RLDMGQTITITEA 129
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ S G+ +T L L ++ S N A+A + FVQ MN +++
Sbjct: 130 EIDRLKGTGSRLSIGTELTRTQLLHLGLMSSENRAIHALARTYPGGMSAFVQAMNAKAQS 189
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LG+ T F G+ + +TA D+ ++ + Q+ + ++Y
Sbjct: 190 LGMRHTRFYEPTGL-DPRNVSTASDLLLMAQAADRYPQIRQFSTAKSGQVYTSAGRVQQY 248
Query: 201 PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N+N V KTG+ +G ++V G +I V+LG+ TR + +L
Sbjct: 249 QNSNALVREGRWNISVQKTGYIREAGRSMVLKTQMGRDPIIMVVLGSSTSTTRVNDARTL 308
>gi|82750345|ref|YP_416086.1| penicillin binding protein 4 [Staphylococcus aureus RF122]
gi|82655876|emb|CAI80280.1| penicillin binding protein 4 [Staphylococcus aureus RF122]
Length = 431
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LD 248
Y N++ + G DG+KTG + + +N + +G + VI+GA
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLDG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|257452169|ref|ZP_05617468.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 3_1_5R]
Length = 383
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 10/240 (4%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ D G++ D AS+TK+MT V F ++ +A + I+K+
Sbjct: 139 AGLVAD-TRGNIYYSKNIDKKLPMASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNK 197
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLS 148
S + K G T TL + ++ + SAN+ A A+A+ + K + F++ MN ++ +G+S
Sbjct: 198 GGSGISMKPGETFTLLDLIRATAIYSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVS 257
Query: 149 ATH-FMNAHGVV-----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ + G+ + TAR + LS +P+YM IK ++I +
Sbjct: 258 KEISYYSPAGLPTRYTKEPMDIGTARGIYKLSLEAI-KYPEYMEIAGIKQMKIHNGRISI 316
Query: 203 TNWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N G G+KTG+ + +NI ++ G + I VILG R+ LL
Sbjct: 317 RNRNHLIGEEGIYGIKTGYHKEAKYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLLD 376
>gi|266618633|pdb|3HUM|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From
Staphylococcus Aureus Col In Complex With Cefotaxime
gi|266618634|pdb|3HUM|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From
Staphylococcus Aureus Col In Complex With Cefotaxime
gi|266618635|pdb|3HUN|A Chain A, Crystal Structure Of Penicillin Binding Protein 4 From
Staphylococcus Aureus Col In Complex With Ampicillin
gi|266618636|pdb|3HUN|B Chain B, Crystal Structure Of Penicillin Binding Protein 4 From
Staphylococcus Aureus Col In Complex With Ampicillin
Length = 453
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 79 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 138
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 139 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 198
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 199 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 258
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 259 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 318
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 319 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 358
>gi|90578556|ref|ZP_01234366.1| Hypothetical D-alanyl-D-alanine endopeptidase [Vibrio angustum S14]
gi|90439389|gb|EAS64570.1| Hypothetical D-alanyl-D-alanine endopeptidase [Vibrio angustum S14]
Length = 298
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/276 (18%), Positives = 101/276 (36%), Gaps = 18/276 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
MR ++ + ++D +TG + + +
Sbjct: 1 MRNAFILFFTLASISFSSMASINTSKLDPNKLQTASVSNYVIDLSTGKTLYKKNSNVKMP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLL 111
ASLTKLMTA V K L +T + + + + + GST++ + +
Sbjct: 61 IASLTKLMTAMVTLDA----KLPLNEKLTFTPTDKERMYNTYTRIRMGSTLSRGETIHIA 116
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ S N A +A + + F++ MN +K+LG++ THF+++ G+ H H T +
Sbjct: 117 LMSSENLAAATLAGNYPGGYEAFIKAMNRKAKSLGMTNTHFVDSSGLDPHNHSTASDVAK 176
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVGTFLG-ADGMKTGFTCASGF 226
++ K + + Y NTN + KTG+ +G
Sbjct: 177 MVRAAYKYPEIRKYSTSPVHTAYFGKPSYKLGYTNTNALARGKKWTVNLTKTGYLDEAGR 236
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+ + ++ V+L + + T + +
Sbjct: 237 CLGMVTTIDGKRILMVMLDSQGKLTPIGDAGRIKQW 272
>gi|148544752|ref|YP_001272122.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri DSM
20016]
gi|184154105|ref|YP_001842446.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM
1112]
gi|227363878|ref|ZP_03847983.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
MM2-3]
gi|325683088|ref|ZP_08162604.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
reuteri MM4-1A]
gi|148531786|gb|ABQ83785.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri DSM
20016]
gi|183225449|dbj|BAG25966.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri JCM
1112]
gi|227071105|gb|EEI09423.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
MM2-3]
gi|324977438|gb|EGC14389.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
reuteri MM4-1A]
Length = 414
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/383 (14%), Positives = 117/383 (30%), Gaps = 50/383 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENY 46
M++ A +L + + A +D +G V+ +
Sbjct: 1 MKKVKSFFAKLLLITAIISICLNGLGMFEKVHADTAAFQMDARAAYAIDAESGQVLYQKN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ AS+ K++T V+ ++ I I+ ++ +
Sbjct: 61 ATKRYPIASVIKILTLGVILQDIRNHHLKWDQKIKITPAVAKMADDWHFSNVPLMNGEEY 120
Query: 107 ALKLLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--- 159
++ L+ A E + + F + M +K G++ N G+
Sbjct: 121 TVRQLVDSMMLVSADGSTEALALADAGSTAAFNKKMMAFAKKAGVTDIKIYNMIGLPNGD 180
Query: 160 -----------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNT 203
+ +A+D+A++S + ++P+ + + K K N
Sbjct: 181 LGKHKLKGVDKDAENLLSAKDVALISKYLVENYPETLDITKQKFANFDVTKDQQYLMTNV 240
Query: 204 NW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
N DG+KTG T +G IV++ + +I V L
Sbjct: 241 NALLPQNGFAPKDGEIDGLKTGNTDRAGKCIVSTGTFAGRRIILVALHTKGEWNDQSKMQ 300
Query: 258 -----SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
L+ Y + KK++ + + N + T+K + MK
Sbjct: 301 QDFYNKLVDE--YQPVEIKKVSDLSAKLTSVKVKNGKNKNKANIKLTKKTTVWLPKNMKL 358
Query: 313 AKDKESHFIDFEKITLLKNKITK 335
K + + + L I K
Sbjct: 359 QATKPTLRVQGDDQKQLTAPIKK 381
>gi|126649987|ref|ZP_01722220.1| hypothetical protein BB14905_01915 [Bacillus sp. B14905]
gi|126593159|gb|EAZ87121.1| hypothetical protein BB14905_01915 [Bacillus sp. B14905]
Length = 289
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 62/242 (25%), Positives = 102/242 (42%), Gaps = 12/242 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
P L++ N V+ + + PASLTK+MT V + + + I
Sbjct: 36 NLYSPNAILVNLNENKVLIDKNSEEVIYPASLTKMMTVLVAIEQIPNLQEEIVLGNNIFN 95
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ E S + F +TL++ L ++ S + ++ +AE + +E+KFV MN ++
Sbjct: 96 HLYEANASLAGFLPNEKLTLEDLLYGSMLPSGAEASIGLAEYIAGSERKFVNLMNEKAQQ 155
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL----------- 193
LG+ THFMN G+ HYTT +DM++L T+ Y +
Sbjct: 156 LGMENTHFMNTTGLHHTEHYTTVKDMSLLLQYALTNDEFRQVYTAERYSIKPTNRHPEGI 215
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
K + N G KTG+T +G + + A Q I V +GA N+R
Sbjct: 216 TFTNKMFQNMTTRALPGGEILGGKTGYTDDAGLCLASLATINGQEYILVTVGAEG-NSRT 274
Query: 254 KV 255
+
Sbjct: 275 EQ 276
>gi|306821313|ref|ZP_07454923.1| possible beta-lactamase [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304550654|gb|EFM38635.1| possible beta-lactamase [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 383
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/283 (20%), Positives = 106/283 (37%), Gaps = 8/283 (2%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D ++G V+ D AS+TK++ V+ +K + + IS
Sbjct: 14 PVITGVSGAIMDYDSGAVLWSKNGDSKRTIASMTKVLAVAVILDEIKAGNLSMNDKVAIS 73
Query: 84 KN-----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ + F+ G T T+ L +V S+N +AI E + + F M
Sbjct: 74 EYASAISHDPAWAAYECFQVGETYTVKTLLTNAVVSSSNASIIAIGEHISGSTANFAIKM 133
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + +G +F G+ + T + + + + +K + IKG
Sbjct: 134 NTLAAKIG-MEGNFTEPSGIDEANVTTAKSMLKLGKYMYDNHEKEIKKMTMLKEVYIKGI 192
Query: 199 KYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
TN + + G +G+KTG N + A +G++ LIAV + N R +
Sbjct: 193 SKEATNKLLLNDYYGIEGLKTGAYSLDNANFIGVAKRGNKRLIAVTMHTTSDN-RFTDTI 251
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
+ G+ N ++ N Q + N+ P + T
Sbjct: 252 KMFEFGWKNDFNKYWKNDKRLTETQISSDNKNPKNGDTFKVTL 294
>gi|332639010|ref|ZP_08417873.1| D-alanyl-D-alanine carboxypeptidase [Weissella cibaria KACC 11862]
Length = 421
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/280 (16%), Positives = 112/280 (40%), Gaps = 28/280 (10%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
I+ + ++ ++ + D TG V+A+ + AS++KL+T Y+V
Sbjct: 13 ILLVTGIATSASAATVTPKVDAQSAVVADVQTGQVLADKNGNERMPIASISKLLTVYLVE 72
Query: 67 SFLKEKKAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+KE + + + I + + N T+ +++ ++KSAN A+A
Sbjct: 73 QAIKEGRLSMQSQIKVPASIVAISNEPALANVPLSTERAYTIQELMEMALIKSANAAALA 132
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTAR 168
+ ++ T+ Q + + + G+ T ++ G+ + +AR
Sbjct: 133 LGYAVSGTDTGVNQQIQDLLTSWGIKDTTIVSGAGLTNGDMGALTNPKLGADVENELSAR 192
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLE-----IKGKKYPNTNWAVGTFLG--ADGMKTGFT 221
++AI+ + TD+P+ ++ E + N++ + G G+KTG+
Sbjct: 193 ELAIVGRHLVTDYPEIQQITSMQTAEVPSGATGTETIENSDKLLADGQGYKFTGLKTGYA 252
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
+ + + ++ V+LG+ + ++L+
Sbjct: 253 LSVHSTFIGLTTLEGRQVVTVVLGSDHT---FSQTVAMLN 289
>gi|253731263|ref|ZP_04865428.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253725004|gb|EES93733.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
Length = 431
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L + ++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVRMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|283769805|ref|ZP_06342697.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Staphylococcus aureus subsp. aureus H19]
gi|283459952|gb|EFC07042.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Staphylococcus aureus subsp. aureus H19]
Length = 431
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 118/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAMKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|89074889|ref|ZP_01161339.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium sp.
SKA34]
gi|89049286|gb|EAR54849.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium sp.
SKA34]
Length = 298
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/276 (18%), Positives = 99/276 (35%), Gaps = 18/276 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
MR ++ + ++D +TG + +
Sbjct: 1 MRNAFILFFTLASISFSSMASINTSKLDPNKLQTASVSNYVIDLSTGKTLYRKNSNVKMP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLL 111
ASLTKLMTA V K L +T + + + + + ST++ + +
Sbjct: 61 IASLTKLMTAMVTLDA----KLPLDEKLTFTPTDKKHMYNTYTRIRMDSTLSRGETIHIA 116
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ S N A +A + K F++ MN +K+LG++ THF+++ G+ H H T +
Sbjct: 117 LMSSENLAAATLAGNYPGGYKAFIKAMNRKAKSLGMTNTHFVDSSGLDPHNHSTASDVAK 176
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVGTFLG-ADGMKTGFTCASGF 226
++ K + + Y NTN + KTG+ +G
Sbjct: 177 MVRAAYKYPEIRKYSTSPVHTAYFGKPNYKLGYTNTNALARGKKWTVNLTKTGYLDEAGR 236
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+ + ++ V+L + + T + +
Sbjct: 237 CLGMVTTIDGKRILMVMLDSQGKLTPIGDAGRIKQW 272
>gi|119357228|ref|YP_911872.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
phaeobacteroides DSM 266]
gi|119354577|gb|ABL65448.1| Serine-type D-Ala-D-Ala carboxypeptidase [Chlorobium
phaeobacteroides DSM 266]
Length = 291
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/282 (23%), Positives = 120/282 (42%), Gaps = 25/282 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL----------PYYTLLDTNTGHVIAENYPDHPW 51
+ L + +M + S I + A Y L +T + V +
Sbjct: 10 KSVLFLFSMFLASGISMPVYAALPVDSLLQPLQPPEIGSYILKETGSSKVFMVKDSEKTI 69
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PASLTK++T+ + + L + I+K A+ PS + FK G + L + +K
Sbjct: 70 QPASLTKILTSIIALESGQ-----LDDEVVITKEATMVEPSKAGFKPGERILLRDLVKAA 124
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---GHYTTAR 168
+V S+ND A AI L + +FV+ MN ++++G+ + F N G + G+ +TA
Sbjct: 125 MVSSSNDAAFAIGIHLEGSVPRFVRKMNRKARDIGMRHSVFTNPAGFDKRVYAGNVSTAE 184
Query: 169 DMAILSWRIKTDFPQY-----MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
D+ L+ + + K N +G + A G+KTGFT +
Sbjct: 185 DLVKLTEYAIRNRKFNEIASLESVLVTERSSNKIYLLKTHNKLLGKYPYAVGIKTGFTRS 244
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+G ++A A + ++ ++ V+L A R ++ + F
Sbjct: 245 AGKCLIARAKKENKDMLLVLLDAKG--DRWSIAEQMFESAFT 284
>gi|291613451|ref|YP_003523608.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans
lithotrophicus ES-1]
gi|291583563|gb|ADE11221.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sideroxydans
lithotrophicus ES-1]
Length = 299
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/254 (21%), Positives = 104/254 (40%), Gaps = 9/254 (3%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
S++ + + D I + AS+TKLMTA V+
Sbjct: 35 SSVAFSHMPPPRLQSAIAMIYDEQDQRPIYSKNSHNVVPIASITKLMTAMVILDAK---- 90
Query: 74 AMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ PI+IS + S S + G T+T ++L ++ S N A A+A +
Sbjct: 91 LPMDEPISISPEDRDHLKGSRSRMRNGMTLTRAELIQLALMSSENRAAAALARTYPGGTP 150
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+ MN ++ LG+++THF++ G+ T + ++ ++ Q+ +
Sbjct: 151 VMLAMMNAKARELGMNSTHFLDPTGLNSANVSTAQDLVKMVMAAQGYEYIQHCTTSHSRI 210
Query: 193 LEIKGK---KYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+++ + ++ NTN V G KTG+ +G +V A D+ +I V+L +
Sbjct: 211 VQVDSRRTLRFSNTNPLVRNSQWDIGLSKTGYISEAGRCLVMQARITDRPVIIVLLDSWG 270
Query: 249 RNTRNKVSASLLSM 262
+ TR + +
Sbjct: 271 KRTRVGDAVRVKHW 284
>gi|109240381|dbj|BAE96115.1| D, D-carboxypeptidase [Enterococcus raffinosus]
Length = 355
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/266 (19%), Positives = 107/266 (40%), Gaps = 29/266 (10%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+I +++ +T ++ + PAS K++TA V +
Sbjct: 91 ANAIDLNIIAANAIVMNKDTDALLYQKNGTDRIAPASTAKMITALTVLEYC-----SPEE 145
Query: 79 PITISKNASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAES---------- 126
+ + +S KG T+T+ L L++ S ND A +A +
Sbjct: 146 EMRVGAEIEMIHSDSSTAWLMKGDTLTVRQLLIALMLPSGNDAAYTLAVNTGKVIAGDNS 205
Query: 127 --LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
+ + F+ +N ++ +G++ ++F+ G G YTTA D+AI++ D
Sbjct: 206 LSNQQAIQIFMDKVNEKARAIGVTDSNFVVPDGYDAEGQYTTAYDLAIIAKACLEDPIIS 265
Query: 185 M----HYFQIKGLEIKGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ K + Y N+N + G+KTG + G +V++A+
Sbjct: 266 EIVASNTSYEKWPNGREVTYNNSNELLDPNSPYYRPEVIGLKTGTSSLGGACVVSAAVID 325
Query: 236 DQSLIAVILGALDRNTRNKVSASLLS 261
++ I V++G+ + +R + S ++L
Sbjct: 326 GETYICVVMGS-TKESRFQDSVAILD 350
>gi|227530146|ref|ZP_03960195.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis
ATCC 49540]
gi|227349929|gb|EEJ40220.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus vaginalis
ATCC 49540]
Length = 415
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/392 (15%), Positives = 126/392 (32%), Gaps = 57/392 (14%)
Query: 1 MRQF--------LVIIAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPD 48
M++ + I+ + ++S F + A+T +D TG V+ + +
Sbjct: 1 MKKLKRALIAFLVTILTVNVVSLGFANSASADTTKLNLNARAAYAIDAETGQVLYQKNAN 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTL 104
+ ASLTK++T V+ +K + I+ +++ SN G + T+
Sbjct: 61 KTYPVASLTKVLTLAVIEQDVKNHHLSWNQKVKITPAVAKVANDWHFSNVPLNAGESYTI 120
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-- 162
+ +++ SA+ A A+A + + F + M +K G++ N G+
Sbjct: 121 RQLTESMMIVSADGSAEALALADAGSTAAFNKKMQAVAKKAGVTDAKIYNMIGLANGDLG 180
Query: 163 ------------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK-----GKKYPNTNW 205
+ +A+DMA++S + +P + + K + + N N
Sbjct: 181 KNSLKGVKKTAENQFSAKDMALISKYLIETYPDSLKITKTKMANFRVSANQEYQMININS 240
Query: 206 ------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSAS 258
DG+KTG T +G I+++ + +I V L N ++K +
Sbjct: 241 LLPENGFAPKNGTIDGLKTGNTDTAGKCIISTGTFAGRRVIVVALHTKGDWNAQSKDAQK 300
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
+ + Q+ + ++
Sbjct: 301 FYEKLTEIYQPVQLTSLRQLSKNVQDAHVVHAKDKHSTGLELTKATTIWLPKGTVLNQVG 360
Query: 319 ---------------HFIDFEKITLLKNKITK 335
+K + K
Sbjct: 361 AKLKIAQADRSMTHQLKTPVKKGQHVGYVTLK 392
>gi|317058712|ref|ZP_07923197.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 3_1_5R]
gi|313684388|gb|EFS21223.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 3_1_5R]
Length = 390
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 10/240 (4%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ D G++ D AS+TK+MT V F ++ +A + I+K+
Sbjct: 146 AGLVAD-TRGNIYYSKNIDKKLPMASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNK 204
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLS 148
S + K G T TL + ++ + SAN+ A A+A+ + K + F++ MN ++ +G+S
Sbjct: 205 GGSGISMKPGETFTLLDLIRATAIYSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVS 264
Query: 149 ATH-FMNAHGVV-----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ + G+ + TAR + LS +P+YM IK ++I +
Sbjct: 265 KEISYYSPAGLPTRYTKEPMDIGTARGIYKLSLEAI-KYPEYMEIAGIKQMKIHNGRISI 323
Query: 203 TNWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N G G+KTG+ + +NI ++ G + I VILG R+ LL
Sbjct: 324 RNRNHLIGEEGIYGIKTGYHKEAKYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLLD 383
>gi|315659004|ref|ZP_07911871.1| penicillin binding protein 4 [Staphylococcus lugdunensis M23590]
gi|315496128|gb|EFU84456.1| penicillin binding protein 4 [Staphylococcus lugdunensis M23590]
Length = 432
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 73/369 (19%), Positives = 142/369 (38%), Gaps = 55/369 (14%)
Query: 1 MRQFLVIIAMAML----SNIFPFLSIAETNKLPYYTL-----------LDTN-------T 38
M++ +I+ + ++ + F + ++ P D T
Sbjct: 1 MKKIFIILILVLVSFTQFTPYLFAAESDAVLSPSQIATQYGYTGITAAYDPEGAINVSQT 60
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNS 94
G ++ + + W AS+TKLMT Y+ +K+ L + I++N SN+
Sbjct: 61 GQILYNYHGNKKWYLASMTKLMTMYLTLEAVKKGDLSLDDKVKITQNHYRMSTLPELSNT 120
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
G T+ L++ + S+N A+ +A + F + MN +K LG++ T+F N
Sbjct: 121 KLYPGEVYTIAELLQITVSNSSNAAALILANKVSGNVTSFTKLMNKKAKELGMTHTYFTN 180
Query: 155 AHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
G + +TA+D AIL + D P +H+ + G Y
Sbjct: 181 PTGAENTQLQEFAPKLTTNDNNSTSTAKDYAILDQHVIADTPNILHFTKQLAPTQHGVTY 240
Query: 201 PNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG------ALDRN 250
N ++ + G DG+KTG + + +N + +G + VILG
Sbjct: 241 YTFNHSLEGASLSLPGTDGLKTGSSDIANYNHTITTKRGKFRINQVILGVGDYNNLGGEK 300
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
RNK+ +++ F +K ++ N++ + I +++ + ++
Sbjct: 301 ERNKMGNAIMESSFNQYAYKKVLSKGEH-----NINGKTYYIKKDLYDVVPKTLHAKDYQ 355
Query: 311 KEAKDKESH 319
D E H
Sbjct: 356 FVINDGEVH 364
>gi|302186370|ref|ZP_07263043.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae
642]
Length = 311
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 93/242 (38%), Gaps = 8/242 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
++D T V+ + PD AS+TKLMTA VV + ++ I+ +
Sbjct: 40 LASGSAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQPMDEVIPVNISQTPE 99
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S K GS M + L + ++ S N A ++A S F+ MN +K L
Sbjct: 100 ---MKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKAL 156
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP---- 201
G+ T ++ G+ + T ++ K + + K + + Y
Sbjct: 157 GMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKYPLLSELSTTEQKTVTFRKPTYTLGFS 216
Query: 202 NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
NT+ V KTGFT +G +V ++ + VIL A + T ++ +
Sbjct: 217 NTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASRIR 276
Query: 261 SM 262
Sbjct: 277 KW 278
>gi|302386416|ref|YP_003822238.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
saccharolyticum WM1]
gi|302197044|gb|ADL04615.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
saccharolyticum WM1]
Length = 322
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 58/267 (21%), Positives = 96/267 (35%), Gaps = 22/267 (8%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ S + D V+ P PAS+TK MTA + +
Sbjct: 57 LCIVSEDTSSKDGAVTAEAAAVFDLTDKKVLFAKNPFERLYPASITKTMTALIALKY--- 113
Query: 72 KKAMLTTPITISKNASEYPPSN--STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
LT +T++ +A K G +T++ L L++ S ND AIA +
Sbjct: 114 --GNLTDEVTVTGDAVITEAGASLCGIKPGDKLTMEQLLYGLMLPSGNDAGAAIATHIAG 171
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+F Q MN + +G + THF+N HG+ HYTTA D+ ++
Sbjct: 172 GIDQFSQMMNEEAGKIGATGTHFLNPHGLNDENHYTTAYDLYLIFNEALKYPEFRKIIAT 231
Query: 190 IKGLEI--------------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI-VASAIQ 234
+ Y + L G KTG T A+G + + S+
Sbjct: 232 TEYTTTYQDGAGSPVNATWKGTNWYMTGERQMPEGLTVLGGKTGTTKAAGSCLIMGSSDS 291
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLS 261
+ + V+L A + ++L+
Sbjct: 292 SQREYVTVVLKAPNHAGLYDNMTNILN 318
>gi|269302456|gb|ACZ32556.1| D-alanyl-D-alanine carboxypeptidase family protein [Chlamydophila
pneumoniae LPCoLN]
Length = 436
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 59/300 (19%), Positives = 106/300 (35%), Gaps = 36/300 (12%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ F + + + A + ++ ++G V + D PAS
Sbjct: 1 MKRPFFTYLCIIFYGSCASLSLHAGLSFPEVRGATAAVVHADSGKVFYDKDIDAVIYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAML-----------------TTPITISKNASEYPPSNSTFKK 98
+TK+ TA + L + + E S
Sbjct: 61 MTKIATALFILKHYPTVLDTLIKVKQDAIASITPQAKKQSGYRSPPHWLETDGSTIQLHL 120
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK-NLGLSATHFMNAHG 157
+ + L+V SAND A +A + C + +KF+ +N K +G + THF N HG
Sbjct: 121 REELLGWDLFHALLVCSANDAANVLAMACCGSVEKFMDKLNFFLKEEIGCTHTHFNNPHG 180
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNW-----A 206
+ HYTT RD+ + + P + +I TN +
Sbjct: 181 LHHPNHYTTTRDLISIMRCALKEPP-FRGVISTTSYKIGATNLHGERILSPTNKLLLPGS 239
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLLSMGFY 265
+ A G KTG T +G N++ +A + ++ L+ + G + + +L F
Sbjct: 240 TYHYPPALGGKTGTTKTAGKNLIMAAEKNNRLLVTIATGYSGPVSDLYQDVIALCETVFN 299
>gi|323442079|gb|EGA99713.1| penicillin binding protein 4 [Staphylococcus aureus O46]
gi|333033712|emb|CBZ41973.1| penicillin binding protein 4 [Staphylococcus aureus]
Length = 431
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|268680339|ref|YP_003304770.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Sulfurospirillum deleyianum DSM 6946]
gi|268618370|gb|ACZ12735.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Sulfurospirillum deleyianum DSM 6946]
Length = 309
Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 61/294 (20%), Positives = 118/294 (40%), Gaps = 21/294 (7%)
Query: 2 RQFLVIIA-MAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPA 54
++FL ++ +++L+ + + D +T +I PA
Sbjct: 3 KKFLTLLCGVSLLTTSLSANYLDKETAARLSKNTDAIIAKDLSTKELIFSKDAQKINQPA 62
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTK+MTA + + + +TI+++ + P+ + + G L + +K +V
Sbjct: 63 SLTKIMTAMLAIESGR-----MNDVVTITRDMIQVEPTKAGLRIGEKFYLRDLVKAAMVM 117
Query: 115 SANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
SAND A++I FV MN +K LG++ T+F N G H++TA D+ +
Sbjct: 118 SANDAAMSIGVYLGDGNVNTFVAKMNRKAKQLGMNNTNFTNPCGFDIGDHHSTALDLLKM 177
Query: 174 SWRIKTD-----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
S + + + + N + + A G+KTG+T +G +
Sbjct: 178 SEYAIKNSQFNEMAKLKRHDFKSLNTKRAYAAYTHNKLLNNYKYAVGIKTGYTRKAGPCL 237
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+A A G++ ++ V+L + R K ++ T K +
Sbjct: 238 IARAKNGNKDVLVVMLNS---EQRWKDIKTIFEDVLPQLTKTAVQVPTQKPVKK 288
>gi|257466039|ref|ZP_05630350.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium gonidiaformans
ATCC 25563]
Length = 381
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/240 (25%), Positives = 105/240 (43%), Gaps = 10/240 (4%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ D G++ D AS+TK+MT V F ++ +A + I+K+
Sbjct: 137 AGLVAD-TRGNIYYSKNIDKKLPMASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNK 195
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLS 148
S + K G TL + ++ + SAN+ A A+A+ + K + F++ MN ++ +G+S
Sbjct: 196 GGSGISMKPGEKFTLLDLIRATAIYSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVS 255
Query: 149 ATH-FMNAHGVV-----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ + G+ + TAR + LS +P+YM IK ++I +
Sbjct: 256 KEISYYSPAGLPTRYTKEPMDIGTARGIYKLSLEAI-KYPEYMEIAGIKQMKIHNGRISI 314
Query: 203 TNWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N G G+KTG+ + +NI ++ G + I VILG R+ LL
Sbjct: 315 RNRNHLIGEEGIYGIKTGYHKEAKYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLLD 374
>gi|167578731|ref|ZP_02371605.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis TXDOH]
Length = 349
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 8/244 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + ++D +TG + + AS+TKLMTA VV L P
Sbjct: 89 TSQPFGLRSNIVYMVDQHTGETLFDRNSQEVVPIASVTKLMTAMVVLDSKAP----LDEP 144
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + ST++ D+ L + ++ S N A A++ + FV M
Sbjct: 145 IEVTDDDRDLDKFTGSRLAIGSTLSRDDMLHIALMASENRAAAALSRYYPGGREAFVAAM 204
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +++LG+ T+F N G+ +H T + ++ + + ++ +
Sbjct: 205 NQKARSLGMVDTYFENPTGLSKHNVSTARDLVKMVEAAYQYPLIREYSTDLKYDVDTGLR 264
Query: 199 K--YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN + G KTG+ SG +V G + ++ V+L + R++
Sbjct: 265 TLYYHSTNILLHDDAWDIGIQKTGYIKESGICLVMQTTIGGRDVVMVLLDSAGRHSDFFD 324
Query: 256 SASL 259
+A L
Sbjct: 325 AARL 328
>gi|21282333|ref|NP_645421.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485514|ref|YP_042735.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297208633|ref|ZP_06925062.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300912725|ref|ZP_07130168.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
TCH70]
gi|21203770|dbj|BAB94469.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
MW2]
gi|49243957|emb|CAG42383.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296886888|gb|EFH25792.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300886971|gb|EFK82173.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
TCH70]
Length = 431
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|333009575|gb|EGK29027.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
flexneri K-272]
gi|333020502|gb|EGK39765.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
flexneri K-227]
Length = 154
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN +K LGL+ T F HG+ G ++T RDMA+L + D P+ + K
Sbjct: 1 MNGYAKKLGLTNTTFQTVHGLDAPGQFSTVRDMALLGKALIHDVPEEYAIHKEKEFTFNK 60
Query: 198 KKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ PN N + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S
Sbjct: 61 IRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNES 120
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
LL+ GF I Q+ +
Sbjct: 121 EKLLTWGFRFFETVTPIKPDATFVTQRVWFGDK 153
>gi|323439395|gb|EGA97117.1| penicillin binding protein 4 [Staphylococcus aureus O11]
Length = 431
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|296394587|ref|YP_003659471.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus
rotundus DSM 44985]
gi|296181734|gb|ADG98640.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Segniliparus
rotundus DSM 44985]
Length = 407
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 54/266 (20%), Positives = 98/266 (36%), Gaps = 13/266 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ P + + D + G V+A P + PAS K + A V +
Sbjct: 78 LASCGVVQPPGSPALPQGPAHGWLVADLDNGQVLAAEDPHGRFRPASTVKTLLALAVLNE 137
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--S 126
L K+ + T + + + + G+T ++ + L+ ++ S+N A A+A
Sbjct: 138 LDPKQLVQLTEGDQTAD---EESEHKFIQAGTTYSVFDLLEGALMVSSNGAANALARVLG 194
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQY 184
VQ MN+ + LG T GV ++ D+A++ +
Sbjct: 195 GPGGVAAAVQKMNSLADELGAKDTRATTPSGVEAPGGPSSSSPYDLALIFR-AAMKHADF 253
Query: 185 MHYFQIK----GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
K N N + + G G KTG+T + V +A +G + L+
Sbjct: 254 RKIVGQKSVSMHGNPDDFPLVNDNAMLDDYPGMLGGKTGYTDDAEKTFVGAAERGRRRLV 313
Query: 241 AVIL-GALDRNTRNKVSASLLSMGFY 265
+ G +T + +A+LL GF
Sbjct: 314 VTQMYGLNGASTFREQAAALLDWGFS 339
>gi|228993740|ref|ZP_04153645.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
12442]
gi|228765951|gb|EEM14600.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
12442]
Length = 279
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 23/283 (8%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLS----------IAETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ ++I+ +A L F S Y +D NTG V+ +
Sbjct: 1 MKRTIIMIVMIATLFTSMIFFSYTKRQKDVRSNQPDITGKYGVTIDANTGEVLYGKREEE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNA 107
PAS+ K+MT ++ +KE ITI++NA + + + G + D A
Sbjct: 61 RSYPASVAKMMTTILLLENVKE-----DEEITITENAIKTESQSAKIKLRAGEKLKRDEA 115
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
LKL+++ SA+ IA +IAE + +++KFV+ MN +K LG F NA G G+ +
Sbjct: 116 LKLMLIISADPIAESIAEHIAGSKEKFVKMMNARAKELGTKHATFKNASGADALGNKVSP 175
Query: 168 RDMAILSWRIKTDFPQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCA 223
D+AI++ + + + K N A G K+G +
Sbjct: 176 YDIAIITKEALKYPIVLEYMNTTRTTLHTSQRAPKIANYGREELYNDPYAIGSKSGLSAL 235
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ +V + + +I V+L + R + + F
Sbjct: 236 GQYTVVTVDEKDGKRVINVVL-SSTRTQLYPDTKKMAHYAFKQ 277
>gi|15923632|ref|NP_371166.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926319|ref|NP_373852.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
N315]
gi|148267101|ref|YP_001246044.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
subsp. aureus JH9]
gi|150393149|ref|YP_001315824.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
subsp. aureus JH1]
gi|156978970|ref|YP_001441229.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253315285|ref|ZP_04838498.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|255005435|ref|ZP_05144036.2| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257795094|ref|ZP_05644073.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A9781]
gi|258418353|ref|ZP_05682618.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A9763]
gi|258419969|ref|ZP_05682927.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A9719]
gi|258430843|ref|ZP_05688555.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A9299]
gi|258441664|ref|ZP_05690936.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A8115]
gi|258445900|ref|ZP_05694077.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A6300]
gi|258449705|ref|ZP_05697807.1| penicillin binding protein 4 [Staphylococcus aureus A6224]
gi|258454106|ref|ZP_05702078.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A5937]
gi|269202263|ref|YP_003281532.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
ED98]
gi|282894406|ref|ZP_06302635.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Staphylococcus aureus A8117]
gi|282926504|ref|ZP_06334134.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Staphylococcus aureus A10102]
gi|295407421|ref|ZP_06817217.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8819]
gi|296274707|ref|ZP_06857214.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
MR1]
gi|297246543|ref|ZP_06930379.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8796]
gi|13700533|dbj|BAB41830.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
N315]
gi|14246411|dbj|BAB56804.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
Mu50]
gi|147740170|gb|ABQ48468.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
subsp. aureus JH9]
gi|149945601|gb|ABR51537.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
subsp. aureus JH1]
gi|156721105|dbj|BAF77522.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
Mu3]
gi|257789066|gb|EEV27406.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A9781]
gi|257839146|gb|EEV63625.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A9763]
gi|257844052|gb|EEV68443.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A9719]
gi|257849515|gb|EEV73485.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A9299]
gi|257852133|gb|EEV76060.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A8115]
gi|257855476|gb|EEV78414.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A6300]
gi|257857213|gb|EEV80112.1| penicillin binding protein 4 [Staphylococcus aureus A6224]
gi|257863971|gb|EEV86727.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
A5937]
gi|262074553|gb|ACY10526.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
ED98]
gi|282591397|gb|EFB96469.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Staphylococcus aureus A10102]
gi|282763119|gb|EFC03250.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Staphylococcus aureus A8117]
gi|285816342|gb|ADC36829.1| D-alanyl-D-alanine carboxypeptidase / Penicillin binding protein
PBP4 [Staphylococcus aureus 04-02981]
gi|294967702|gb|EFG43735.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8819]
gi|297176574|gb|EFH35838.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus A8796]
gi|312829136|emb|CBX33978.1| D-alanyl-D-alanine carboxypeptidase family protein [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|315128480|gb|EFT84487.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
CGS03]
gi|329724987|gb|EGG61485.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
subsp. aureus 21172]
Length = 431
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|329729569|gb|EGG65970.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
subsp. aureus 21193]
Length = 431
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRSFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|269940219|emb|CBI48596.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
TW20]
Length = 431
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|257427430|ref|ZP_05603829.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430061|ref|ZP_05606445.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
68-397]
gi|257432763|ref|ZP_05609123.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
E1410]
gi|257435667|ref|ZP_05611715.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
M876]
gi|282903234|ref|ZP_06311125.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
C160]
gi|282905021|ref|ZP_06312879.1| D-alanyl-D-alanine carboxypeptidase penicillin binding protein 5/6
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282907979|ref|ZP_06315813.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910286|ref|ZP_06318090.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282913479|ref|ZP_06321268.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
M899]
gi|282918432|ref|ZP_06326169.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus C427]
gi|282923397|ref|ZP_06331077.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Staphylococcus aureus subsp. aureus C101]
gi|283957442|ref|ZP_06374895.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293500526|ref|ZP_06666377.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus 58-424]
gi|293509471|ref|ZP_06668182.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus M809]
gi|293524058|ref|ZP_06670745.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
M1015]
gi|297590466|ref|ZP_06949105.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
MN8]
gi|257275623|gb|EEV07096.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
65-1322]
gi|257279258|gb|EEV09859.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
68-397]
gi|257282178|gb|EEV12313.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
E1410]
gi|257284858|gb|EEV14977.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
M876]
gi|282314265|gb|EFB44655.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Staphylococcus aureus subsp. aureus C101]
gi|282317566|gb|EFB47938.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus C427]
gi|282322511|gb|EFB52833.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
M899]
gi|282325678|gb|EFB55986.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282328224|gb|EFB58503.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331846|gb|EFB61357.1| D-alanyl-D-alanine carboxypeptidase penicillin binding protein 5/6
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282596189|gb|EFC01150.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
C160]
gi|283790893|gb|EFC29708.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290921021|gb|EFD98082.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
M1015]
gi|291095531|gb|EFE25792.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus 58-424]
gi|291467568|gb|EFF10083.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus M809]
gi|297576765|gb|EFH95480.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
MN8]
gi|312438936|gb|ADQ78007.1| D-alanyl-D-alanine
carboxypeptidase\/D-alanyl-D-alanine-endopeptidase
[Staphylococcus aureus subsp. aureus TCH60]
gi|315194012|gb|EFU24406.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
CGS00]
Length = 431
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|258452851|ref|ZP_05700845.1| penicillin-binding protein 4 [Staphylococcus aureus A5948]
gi|257859362|gb|EEV82216.1| penicillin-binding protein 4 [Staphylococcus aureus A5948]
Length = 431
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|1125682|emb|CAA60585.1| penicillin binding protein 4 [Staphylococcus aureus]
gi|1125686|emb|CAA60582.1| penicillin binding protein 4 [Staphylococcus aureus]
Length = 431
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|325263916|ref|ZP_08130649.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
gi|324030954|gb|EGB92236.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
Length = 330
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 66/251 (26%), Positives = 107/251 (42%), Gaps = 22/251 (8%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
L D V+ + PAS TK+MTAYV + L +T+ NA+++
Sbjct: 75 AAGLFDLKNEKVLYADKIHDRLYPASTTKVMTAYVTLKY-----GNLDDIVTVGPNATQF 129
Query: 90 PPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ G T TL + L L++ S ND AVAIAE L + + F MN + LG
Sbjct: 130 AADEQICGLQTGDTATLYDLLNGLVLYSGNDCAVAIAEHLAGSVEAFADMMNTEAAALGA 189
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL--------EIKGKK 199
+ THF+N HG+ HYTTA D+ ++ D Q ++ +
Sbjct: 190 TNTHFVNPHGLQDDNHYTTAYDLYLMFNACVKDQRFLDIISQDSYTGTLTGADGTVRSEV 249
Query: 200 YPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGD-QSLIAVILGALDRNTR 252
+ TN+ + G KTG T +G ++ + I++++GA ++
Sbjct: 250 WHPTNFYSQNLVPAPEGINVFGGKTGTTDEAGSCVILYSQDPQANPYISIVMGAETKDLL 309
Query: 253 NKVSASLLSMG 263
++L+S G
Sbjct: 310 YSQMSALMSAG 320
>gi|302332352|gb|ADL22545.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
subsp. aureus JKD6159]
Length = 431
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYIE 336
>gi|283469938|emb|CAQ49149.1| penicillin binding protein 4 [Staphylococcus aureus subsp. aureus
ST398]
gi|298693973|gb|ADI97195.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
ED133]
Length = 431
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|229105624|ref|ZP_04236258.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
gi|228677894|gb|EEL32137.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
Length = 301
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 62/281 (22%), Positives = 114/281 (40%), Gaps = 19/281 (6%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIA----------ETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ ++I+ +A L F S A + Y +D +TG ++ D
Sbjct: 23 MKRTIVMIVMIATLFTGMIFFSYAQRHQTVRGDQPSITGQYGITIDADTGEILYGKREDE 82
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
PAS+ K+MT ++ +KE + + T I +E + G + D ALK
Sbjct: 83 RSYPASIAKMMTTLLLLENVKENEEITVTENAI---KTESQSKKIKLRAGEKLKRDEALK 139
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
L+++ SA+ I+ +IAE + ++ +FV+ MN +K LG F NA G G+ + D
Sbjct: 140 LMLIISADPISESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 199
Query: 170 MAILSWRIKTDFPQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASG 225
+AI++ + + + K N A G K+G +
Sbjct: 200 IAIITKEALKYPIVLQYMNSVHTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSALGK 259
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ +V + + +I V+L + R + + F
Sbjct: 260 YTVVTVDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFKQ 299
>gi|57651483|ref|YP_185581.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
COL]
gi|87161157|ref|YP_493332.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194413|ref|YP_499206.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|151220824|ref|YP_001331646.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161508904|ref|YP_001574563.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221140859|ref|ZP_03565352.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|262048386|ref|ZP_06021271.1| penicillin binding protein 4 [Staphylococcus aureus D30]
gi|262051768|ref|ZP_06023986.1| penicillin binding protein 4 [Staphylococcus aureus 930918-3]
gi|282921932|ref|ZP_06329630.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
[Staphylococcus aureus A9765]
gi|284023665|ref|ZP_06378063.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
132]
gi|294849312|ref|ZP_06790055.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
[Staphylococcus aureus A9754]
gi|304381746|ref|ZP_07364394.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|57285669|gb|AAW37763.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
COL]
gi|87127131|gb|ABD21645.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87201971|gb|ABD29781.1| penicillin-binding protein 4, putative [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|150373624|dbj|BAF66884.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160367713|gb|ABX28684.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|259160379|gb|EEW45405.1| penicillin binding protein 4 [Staphylococcus aureus 930918-3]
gi|259163474|gb|EEW48031.1| penicillin binding protein 4 [Staphylococcus aureus D30]
gi|282593785|gb|EFB98776.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
[Staphylococcus aureus A9765]
gi|294823844|gb|EFG40270.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
[Staphylococcus aureus A9754]
gi|302750541|gb|ADL64718.1| Serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304339697|gb|EFM05643.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|315197613|gb|EFU27948.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
CGS01]
gi|329313365|gb|AEB87778.1| Penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
T0131]
gi|329729882|gb|EGG66274.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus aureus
subsp. aureus 21189]
Length = 431
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|312867167|ref|ZP_07727377.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis F0405]
gi|311097296|gb|EFQ55530.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis F0405]
Length = 443
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 64/311 (20%), Positives = 121/311 (38%), Gaps = 40/311 (12%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-- 87
++D NTG+V+ ++ D P +PAS++KLMT Y++F + K T I + +
Sbjct: 43 SSLIIDGNTGNVLWKDNIDEPRDPASMSKLMTLYLLFEDMASGKIGKDTVIKATASDQAI 102
Query: 88 ---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+N+ + ++ S + F++ MN +K
Sbjct: 103 GKIYEISNNNIVAGVDYTIPELITMTVVPSSNVSTLMLANLMSNNDPDAFIERMNAKAKE 162
Query: 145 LGLSATHFMNAHGVV---------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
LG++ T + N G + TTARD+ IL + +P ++Y
Sbjct: 163 LGMTNTVWNNPSGAAISTLQGYYPVNNYPNDAANQTTARDLGILVYHFINQYPDILNYTN 222
Query: 190 IKGLEIKGKKYPNTNWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ +K + + G DG+KTG + FN +A+ +G+Q LI
Sbjct: 223 QAQVTVKKGTPYEETFDTYNYSLPGAKYALKGVDGLKTGSSPRGAFNYIATIKRGNQRLI 282
Query: 241 AVILGALDRNT------RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
AVI+G D R+ +L+ + + +K ++ + Q + + + +
Sbjct: 283 AVIMGVGDWADQDGEYYRHPFGNALIEKAYKDFGYKKLLDAGV-----QKIDGKTYTLEK 337
Query: 295 EVCTTQKEIIN 305
T K+
Sbjct: 338 PFYATVKKGAK 348
>gi|167616867|ref|ZP_02385498.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis Bt4]
gi|257140788|ref|ZP_05589050.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis E264]
Length = 349
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/245 (22%), Positives = 102/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + ++D +TG + + AS+TKLMTA VV L P
Sbjct: 89 TSQPFGLRSNIVYMVDQHTGETLFDRNSQEVVPIASVTKLMTAMVVLDSKAP----LDEP 144
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + ST++ D+ L + ++ S N A A++ + FV M
Sbjct: 145 IEVTDDDRDLDKFTGSRLAIGSTLSRDDMLHIALMASENRAAAALSRYYPGGREAFVAAM 204
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + +TARD+ + + +K
Sbjct: 205 NRKARSLGMVDTYFENPTGL-SKHNVSTARDLVKMVEAAYQYPLIREYSTDLKYDVDTGL 263
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V G + ++ V+L + R++
Sbjct: 264 RTLYYHSTNILLHDDAWDIGIQKTGYIKESGICLVMQTTIGGRDVVMVLLDSAGRHSDFF 323
Query: 255 VSASL 259
+A L
Sbjct: 324 DAARL 328
>gi|315917196|ref|ZP_07913436.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium gonidiaformans
ATCC 25563]
gi|313691071|gb|EFS27906.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium gonidiaformans
ATCC 25563]
Length = 388
Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats.
Identities = 60/240 (25%), Positives = 105/240 (43%), Gaps = 10/240 (4%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ D G++ D AS+TK+MT V F ++ +A + I+K+
Sbjct: 144 AGLVAD-TRGNIYYSKNIDKKLPMASVTKVMTLLVTFDAIRNGEAHFDDKVVITKDVYNK 202
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLS 148
S + K G TL + ++ + SAN+ A A+A+ + K + F++ MN ++ +G+S
Sbjct: 203 GGSGISMKPGEKFTLLDLIRATAIYSANNAAYAVAKHIGKGSIPNFIKKMNKKAREVGVS 262
Query: 149 ATH-FMNAHGVV-----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ + G+ + TAR + LS +P+YM IK ++I +
Sbjct: 263 KEISYYSPAGLPTRYTKEPMDIGTARGIYKLSLEAI-KYPEYMEIAGIKQMKIHNGRISI 321
Query: 203 TNWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N G G+KTG+ + +NI ++ G + I VILG R+ LL
Sbjct: 322 RNRNHLIGEEGIYGIKTGYHKEAKYNITVASKDGQREFIVVILGGNSYKDRDNAVLHLLD 381
>gi|258423292|ref|ZP_05686183.1| penicillin-binding protein 4 [Staphylococcus aureus A9635]
gi|257846353|gb|EEV70376.1| penicillin-binding protein 4 [Staphylococcus aureus A9635]
Length = 431
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDFAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|15618582|ref|NP_224868.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae CWL029]
gi|15836204|ref|NP_300728.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae J138]
gi|16752369|ref|NP_444627.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pneumoniae AR39]
gi|33242029|ref|NP_876970.1| serine-type D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae
TW-183]
gi|4376972|gb|AAD18811.1| D-Ala-D-Ala Carboxypeptidase [Chlamydophila pneumoniae CWL029]
gi|7189011|gb|AAF37962.1| D-alanyl-D-alanine carboxypeptidase [Chlamydophila pneumoniae AR39]
gi|8979044|dbj|BAA98879.1| D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae J138]
gi|33236539|gb|AAP98627.1| serine-type D-Ala-D-Ala carboxypeptidase [Chlamydophila pneumoniae
TW-183]
Length = 436
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 59/300 (19%), Positives = 106/300 (35%), Gaps = 36/300 (12%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M++ F + + + A + ++ ++G V + D PAS
Sbjct: 1 MKRPFFTYLCIIFYGSCASLSLHAGLSFPEVRGATAAVVHADSGKVFYDKDIDAVIYPAS 60
Query: 56 LTKLMTAYVVFSFLKEKKAML-----------------TTPITISKNASEYPPSNSTFKK 98
+TK+ TA + L + + E S
Sbjct: 61 MTKIATALFILKHYPTVLDTLIKVKQDAIASITPQAKKQSGYRSPPHWLETDGSTIQLHL 120
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK-NLGLSATHFMNAHG 157
+ + L+V SAND A +A + C + +KF+ +N K +G + THF N HG
Sbjct: 121 REELLGWDLFHALLVCSANDAANVLAMACCGSVEKFMDKLNFFLKEEIGCTHTHFNNPHG 180
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNW-----A 206
+ HYTT RD+ + + P + +I TN +
Sbjct: 181 LHHPNHYTTTRDLISIMRCALKEPP-FRGVISTTSYKIGATNLHGERILSPTNKLLLPGS 239
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR-NTRNKVSASLLSMGFY 265
+ A G KTG T +G N++ +A + ++ L+ + G + + +L F
Sbjct: 240 TYHYPPALGGKTGTTKTAGKNLIMAAEKNNRLLVTIATGYSGPVSDLYQDVIALCETVFN 299
>gi|152977277|ref|YP_001376794.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152026029|gb|ABS23799.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus cytotoxicus NVH
391-98]
Length = 279
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/269 (21%), Positives = 108/269 (40%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 15 FIGMIFFSYAQRQKNIRADQPPITGKYGITIDADTGEILYGKREDERSYPASIAKIMTTI 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +K+ ITI++NA + G + D ALKL+++ SA+ ++
Sbjct: 75 LLLENVKK-----DEEITITENAIKTESQSKKIKLHAGEKLKRDEALKLMLIISADPVSE 129
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++++FV+ MN +K LG F NA G G+ + D+AIL+
Sbjct: 130 SIAEHIAGSKEEFVKMMNTRAKELGTKHATFKNASGADALGNKVSPYDIAILTKEALKYP 189
Query: 182 PQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + + K N A G K+G + + +V + +
Sbjct: 190 IVLKYMNTTRTTLHTSERTVKLANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKEGK 249
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R+ + +
Sbjct: 250 RVITVVL-SSTRHELYPDTKKMAHYALKQ 277
>gi|257791061|ref|YP_003181667.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eggerthella
lenta DSM 2243]
gi|317488221|ref|ZP_07946790.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA]
gi|257474958|gb|ACV55278.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eggerthella
lenta DSM 2243]
gi|316912663|gb|EFV34203.1| D-alanyl-D-alanine carboxypeptidase [Eggerthella sp. 1_3_56FAA]
Length = 349
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 66/275 (24%), Positives = 104/275 (37%), Gaps = 32/275 (11%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
L+D + G + D ASLTK+MTA V +T I ++
Sbjct: 54 PDFDASCAALMDED-GTLWFGRNADDAAQIASLTKIMTAIVAAD-----WLDASTMIEVT 107
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND--------------IAVAIAESLCK 129
A+ S++ +G +MT D+ALK L+ S ND
Sbjct: 108 PEAASVGESSAGLAQGDSMTFDDALKALLTASGNDAASAIAQAAGARMLAQEGSGGDAYA 167
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILSWRIKT----DF 181
E FV+ MN + LGL + F N HG+ G Y+ A D+A +
Sbjct: 168 CEAAFVEAMNAKAAELGLENSFFANPHGLDFDAFAQGQYSCAADVATMLRAAMQIDLVRA 227
Query: 182 PQYMHYFQIKGLEIKGKK---YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQ 237
I NT+ +G++ GA KTG+T A+G ++ +
Sbjct: 228 NIGFSQADITVQRDGAPVTLALENTDALLGSYPGACAAKTGYTLAAGPCAASAVNRGDGH 287
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
AV+LG+ + R SA+L + N++ +
Sbjct: 288 KYYAVVLGSSSKPQRFVDSAALYDWAYANRSSLRA 322
>gi|214090056|gb|ACJ63448.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Ochrobactrum sp.
11a]
Length = 199
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 3/169 (1%)
Query: 8 IAMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+ +A+++ + ++D NTG + + D PASLTK+MT Y+
Sbjct: 20 LLLAVVTGCSTASTTIPAIAASDRYAAIVIDANTGKTLFASNADAQRYPASLTKMMTLYM 79
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+F ++ + T I +S A+ PP+ F+ G ++ ++A +I KSAND+A A+
Sbjct: 80 LFEAMQAGRMNKDTRIPVSAYAAARPPTKIGFRSGQSIRAEDAALAMITKSANDVATAVG 139
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
E + +E++F Q M ++ LG+ T F NA G+ +TTARDMAIL
Sbjct: 140 EYIGGSEERFAQMMTAKARRLGMRNTTFRNASGLPNMAQHTTARDMAIL 188
>gi|229099467|ref|ZP_04230396.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
gi|229118482|ref|ZP_04247836.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
gi|228665052|gb|EEL20540.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
gi|228683963|gb|EEL37912.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
Length = 301
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/267 (21%), Positives = 104/267 (38%), Gaps = 8/267 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ D PAS+ K+MT
Sbjct: 37 FTGMIFFSYAQRQQTVRVDQPSITGQYGITIDADTGEILYGKREDERSYPASIAKMMTTL 96
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
++ +KE + + T I +E + G + D ALKL+++ SA+ I+ +I
Sbjct: 97 LLLENVKENEEITVTENAI---KTESQSKKIKLRAGEKLKRDEALKLMLIISADPISESI 153
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 154 AEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKEALKYPIV 213
Query: 184 YMHYFQ---IKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + K N A G K+G + + +V + + +
Sbjct: 214 LQYMNSVNTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGKRV 273
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYN 266
I V+L + R + + F
Sbjct: 274 INVVL-SSTRAQLYPDTKKMAHYAFKQ 299
>gi|323465190|gb|ADX77343.1| penicillin binding protein 4 [Staphylococcus pseudintermedius ED99]
Length = 425
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 76/373 (20%), Positives = 150/373 (40%), Gaps = 50/373 (13%)
Query: 1 MRQFLVIIAMAMLSN------IFPFLSIAETNKLPYYT----------LLDT-NTGHVIA 43
M++ ++ I + ++ + +++ TG ++
Sbjct: 1 MKKIILSIVVVFFASTIITPFARAYTPTPVELAQQSGYPVTWAYQPEGMINISQTGQILY 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
E + W PAS+TKLMT Y+ +KEKK L + I+ SN+ G
Sbjct: 61 EFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTLPELSNTKLYPG 120
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
T T+ L++ + S+N A+ +A + + FV MN+T+K+LG++ TH++N G
Sbjct: 121 ETYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMNDTAKSLGMTHTHYVNPTGAE 180
Query: 160 QH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204
++ARD AIL+ + D P+ +++ + G Y N
Sbjct: 181 NRLLLEFAPKKYQHESSSTSSARDYAILAQHVVKDTPKILYFTKQIAPTQHGVTYYTFND 240
Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKV 255
+ G DG+KTG + + +N + +G + +I+GA D RN +
Sbjct: 241 LLEGGNMSLPGTDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAGDYKNLGGEKQRNMM 300
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
SAS ++ F +K ++ + + + ++E++ + ++ +
Sbjct: 301 SASAINYTFSQYDYKKILSKG-----KHKIDGKSYYVTEDLYDVVPKDMSKPYHLVVKDS 355
Query: 316 KESHFIDFEKITL 328
+ + IT
Sbjct: 356 QVHLDYPRKFITK 368
>gi|319891642|ref|YP_004148517.1| D-alanyl-D-alanine carboxypeptidase / Penicillin binding protein
PBP4 [Staphylococcus pseudintermedius HKU10-03]
gi|317161338|gb|ADV04881.1| D-alanyl-D-alanine carboxypeptidase / Penicillin binding protein
PBP4 [Staphylococcus pseudintermedius HKU10-03]
Length = 425
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 76/373 (20%), Positives = 150/373 (40%), Gaps = 50/373 (13%)
Query: 1 MRQFLVIIAMAMLSN------IFPFLSIAETNKLPYYT----------LLDT-NTGHVIA 43
M++ ++ I + ++ + +++ TG ++
Sbjct: 1 MKKIILSIVVVFFASTIITPFARAYTPTPVELAQQSGYPVTWAYQPEGMINISQTGQILY 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
E + W PAS+TKLMT Y+ +KEKK L + I+ SN+ G
Sbjct: 61 EFQSEQQWYPASMTKLMTMYLTLQAVKEKKLSLNDTVQITDQHYRMSTLPELSNTKLYPG 120
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
T T+ L++ + S+N A+ +A + + FV MN+T+K+LG++ TH++N G
Sbjct: 121 ETYTVAELLQITVSASSNAAALILANQVSDSTSDFVDKMNDTAKSLGMTHTHYVNPTGAE 180
Query: 160 QH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN- 204
++ARD AIL+ + D P+ +++ + G Y N
Sbjct: 181 NRLLLEFAPKKYQHESSSTSSARDYAILAQHVVKDTPKILYFTKQIAPTQHGVTYYTFND 240
Query: 205 ---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------RNTRNKV 255
+ G DG+KTG + + +N + +G + +I+GA D RN +
Sbjct: 241 LLEGGNMSLPGTDGLKTGSSDIADYNNSLTTKRGKFRIFHIIMGAGDYKHLGGEKQRNMM 300
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
SAS ++ F +K ++ + + + ++E++ + ++ +
Sbjct: 301 SASAINYTFSQYDYKKIVSKG-----KHKIDGKSYYVTEDLYDVVPKDMSKPYHLVVKDS 355
Query: 316 KESHFIDFEKITL 328
+ + IT
Sbjct: 356 QVHLDYPRKFITK 368
>gi|169351003|ref|ZP_02867941.1| hypothetical protein CLOSPI_01780 [Clostridium spiroforme DSM 1552]
gi|169292065|gb|EDS74198.1| hypothetical protein CLOSPI_01780 [Clostridium spiroforme DSM 1552]
Length = 342
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 62/308 (20%), Positives = 121/308 (39%), Gaps = 11/308 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ Y +++ + VI + D+ + AS++K+MT + + L T
Sbjct: 24 SVKPVEFQGKSYIVMEASNQVVIEGSNEDYIQSVASISKIMTCILAIENMD-----LDTI 78
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
IT+ ++ S G ++L + L L+++S ND A+ IA+++ K KFV MN
Sbjct: 79 ITVDDTINKAWGSGIYIHIGDKISLRDLLYGLMLRSGNDAALMIAKAVAKDVPKFVDMMN 138
Query: 140 NTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKTDFPQYMH-YFQIKGLEIK 196
+ ++ L L T F N G+ +G+ +T DMA L + + E
Sbjct: 139 DKARELELHNTTFSNPTGLDEEDNGNQSTVYDMARLMAYCHQNPIFNEIVKTKEYVREDG 198
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ N N + + G KTGFT + ++ A + LI V + +
Sbjct: 199 NGTWHNKNKLLTNYKYCIGGKTGFTKKARRTLITMARKNGLDLIIVTFNCGND---FEFH 255
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
F + K + I +F QQ ++ + + + ++ N ++ + +
Sbjct: 256 QKKYEECFDLLEETKIFSRGIVEFKQQKYYLDLDLFVNKKDSDKVDVSFDNNEIIISLNN 315
Query: 317 ESHFIDFE 324
+
Sbjct: 316 QPIRKQKV 323
>gi|289551493|ref|YP_003472397.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
[Staphylococcus lugdunensis HKU09-01]
gi|289181024|gb|ADC88269.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
[Staphylococcus lugdunensis HKU09-01]
Length = 432
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 69/354 (19%), Positives = 134/354 (37%), Gaps = 51/354 (14%)
Query: 1 MRQFLVIIAMAML----SNIFPFLSIAETNKLPYYTL-----------LDTN-------T 38
M++ +I+ + ++ + F + ++ P D T
Sbjct: 1 MKKIFIILILVLVSFTQFTPYLFAAESDAVLSPSQIATQYGYTGITAAYDPEGAINVSQT 60
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNS 94
G ++ + + W AS+TKLMT Y+ +K+ L + I++N SN+
Sbjct: 61 GQILYNYHGNKKWYLASMTKLMTMYLTLEAVKKGDLSLDDKVKITQNHYRMSTLPELSNT 120
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
G T+ L++ + S+N A+ +A + F + MN +K LG++ T+F N
Sbjct: 121 KLYPGEVYTIAELLQITVSNSSNAAALILANKVSGNVTSFTKLMNKKAKELGMTHTYFTN 180
Query: 155 AHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
G + +TA+D AIL + D P +H+ + G Y
Sbjct: 181 PTGAENTQLQEFAPKLTTNDNNSTSTAKDYAILDQHVIADTPNILHFTKQLAPTQHGVTY 240
Query: 201 PNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG------ALDRN 250
N ++ + G DG+KTG + + +N + +G + VILG
Sbjct: 241 YTFNHSLEGASLSLPGTDGLKTGSSDIANYNHTITTKRGKFRINQVILGVGDYNNLGGEK 300
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEII 304
RNK+ +++ F +K ++ + ++ + + T
Sbjct: 301 ERNKMGNAIMESSFNQYAYKKVLSKG-EHNINGKTYYIKKDLYDVIPKTLHAKD 353
>gi|60101256|gb|AAX13706.1| penicillin-binding protein 4 [Staphylococcus aureus]
Length = 431
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L + ++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVRMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL R+ + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLRVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|83717156|ref|YP_440158.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis E264]
gi|83650981|gb|ABC35045.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis E264]
Length = 373
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 53/244 (21%), Positives = 101/244 (41%), Gaps = 8/244 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + ++D +TG + + AS+TKLMTA VV L P
Sbjct: 113 TSQPFGLRSNIVYMVDQHTGETLFDRNSQEVVPIASVTKLMTAMVVLDSKAP----LDEP 168
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + ST++ D+ L + ++ S N A A++ + FV M
Sbjct: 169 IEVTDDDRDLDKFTGSRLAIGSTLSRDDMLHIALMASENRAAAALSRYYPGGREAFVAAM 228
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N +++LG+ T+F N G+ +H T + ++ + + ++ +
Sbjct: 229 NRKARSLGMVDTYFENPTGLSKHNVSTARDLVKMVEAAYQYPLIREYSTDLKYDVDTGLR 288
Query: 199 K--YPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN + G KTG+ SG +V G + ++ V+L + R++
Sbjct: 289 TLYYHSTNILLHDDAWDIGIQKTGYIKESGICLVMQTTIGGRDVVMVLLDSAGRHSDFFD 348
Query: 256 SASL 259
+A L
Sbjct: 349 AARL 352
>gi|229076391|ref|ZP_04209356.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
gi|228706826|gb|EEL59034.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-18]
Length = 301
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 62/281 (22%), Positives = 113/281 (40%), Gaps = 19/281 (6%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIA----------ETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ ++I+ +A L F S A + Y +D +TG ++ D
Sbjct: 23 MKRTIVMIVMIATLFTGMIFFSYAQRHQTVRGDQPSITGQYGITIDADTGEILYGKREDE 82
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
PAS+ K+MT ++ +KE + + T I +E + G + D ALK
Sbjct: 83 RSYPASIAKMMTTLLLLENVKENEEITVTENAI---KTESQSKKIKLRAGEKLKRDEALK 139
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
L+++ SA+ I+ +IAE + ++ +FV+ MN +K LG F NA G G+ + D
Sbjct: 140 LMLIISADPISESIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYD 199
Query: 170 MAILSWRIKTDFPQYMHYFQ---IKGLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASG 225
+AI++ + + K N A G K+G +
Sbjct: 200 IAIITKEALKYPIVLQYMNSVNTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSALGK 259
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ +V + + +I V+L + R + + F
Sbjct: 260 YTVVTVDEKDGKRVINVVL-SSTRAQLYPDTKKMAHYAFKQ 299
>gi|321472931|gb|EFX83900.1| hypothetical protein DAPPUDRAFT_315307 [Daphnia pulex]
Length = 285
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 65/234 (27%), Positives = 106/234 (45%), Gaps = 6/234 (2%)
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ L+ +IV+S ND + + E L +E+ FV MN +K LG THF+N+ G + GH +
Sbjct: 13 DLLQGIIVQSGNDACIVVTEGLAGSEENFVSQMNQKAKELGAINTHFLNSTGWPERGHTS 72
Query: 166 TARDMAILSWRIKTDFPQYMH-YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
T RD+ + R DFP++ Y+ G + N N + LG DG+KTG T
Sbjct: 73 TPRDLMLFGIRTIRDFPEFYKIYYSQLEFTYNGIRQNNRNPLLYNKLG-DGLKTGHTDEG 131
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
GF + S +GD+ LI VI G + TR + ++ +L+ G + +
Sbjct: 132 GFGLAGSGQRGDRRLIFVINGLKNDKTRAETASKMLNYGMDSFEAITLYSQDAVVEEMPL 191
Query: 285 LSNEVPNIS----EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
NIS + + + K N + K + + EK +L + +
Sbjct: 192 SGASQSNISLVTIKPIIISVKRGYNDQIKKNIIKKPGAFKLPIEKGKILADLVV 245
>gi|257462931|ref|ZP_05627336.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D12]
gi|317060551|ref|ZP_07925036.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D12]
gi|313686227|gb|EFS23062.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D12]
Length = 379
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 64/240 (26%), Positives = 107/240 (44%), Gaps = 10/240 (4%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ DT G++ D AS+TK+MT V F ++ +A L + I+K+
Sbjct: 135 AGLVADTK-GNIYYSKNIDKKLPMASVTKVMTLLVTFDAIRNGEAHLEDKVVITKDVYNK 193
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLS 148
S + K G T TL + ++ + SAN+ A A+A+ + K + F++ MN ++ +G+S
Sbjct: 194 GGSGISMKPGETFTLLDLIRATAIYSANNAAYAVAKHIGKGSISNFIKKMNKKAREMGIS 253
Query: 149 ATH-FMNAHGVVQ-----HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ + G+ TAR + LS +P+YM IK ++I K
Sbjct: 254 KEISYYSPAGLPSRYTKEPMDIGTARGIYKLSLEAI-KYPEYMKIAGIKQMKIHHGKINI 312
Query: 203 TNWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N G G+KTG+ + +NI ++ G + I VILG R+ LL
Sbjct: 313 RNRNHLIGEEGIYGIKTGYHKEAKYNITVASKDGSREFIVVILGGESYKDRDNAVLRLLE 372
>gi|169828716|ref|YP_001698874.1| penicillin-binding protein dacF [Lysinibacillus sphaericus C3-41]
gi|168993204|gb|ACA40744.1| Penicillin-binding protein dacF precursor (D-alanyl-D-alanine
carboxypeptidase) [Lysinibacillus sphaericus C3-41]
Length = 266
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 5/229 (2%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ LL+ G V+ E D PASLTK+MTA V + +
Sbjct: 20 PSLHSKNALLLNEQ-GEVLFEKNADAIIYPASLTKIMTAIVAIEMTDDLQMQTIVKPQTI 78
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ S + F G +T+++ L ++ S D + +AE++ +E +FV +MNN ++
Sbjct: 79 AKYTAQNASMAGFHAGDFVTIEDLLYGTLLASGADASGTLAEAIAGSEDEFVTYMNNKAQ 138
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
LG+ THF+N G+ + H ++ +D++ L + Y + +
Sbjct: 139 ELGMDTTHFVNTSGLHEEAHVSSLQDISKLLRYALENPTFYRIFTSKTYTTHVPTALLIS 198
Query: 204 NWAVGTFLGADGM----KTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
N G DG KTG+T +G + + + + + + A
Sbjct: 199 NSLFTRMPGMDGTILGGKTGYTPEAGLCLASLMEKDGRKFLFITTNAPG 247
>gi|49482870|ref|YP_040094.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295427185|ref|ZP_06819821.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|49240999|emb|CAG39669.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295128973|gb|EFG58603.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus aureus subsp.
aureus EMRSA16]
Length = 431
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 118/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K + + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILPKGEQRINGKKYYVE 336
>gi|257424761|ref|ZP_05601188.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
55/2053]
gi|257272331|gb|EEV04454.1| penicillin-binding protein 4 [Staphylococcus aureus subsp. aureus
55/2053]
Length = 455
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|186476224|ref|YP_001857694.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
phymatum STM815]
gi|184192683|gb|ACC70648.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
phymatum STM815]
Length = 387
Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/247 (21%), Positives = 95/247 (38%), Gaps = 8/247 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
A + ++D NT + + AS+TKLMTA VV +
Sbjct: 126 TPDALMLRSSVAYVVDQNTSESLFDKNSRAVVPIASITKLMTAMVVLDSKAAMTEQIEVT 185
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
++ + S GS ++ ++ L + ++ S N A A++ F+ MN
Sbjct: 186 D---EDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFMAAMN 242
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---K 196
+K LG++ THF N G+ + ++ARD+ + +
Sbjct: 243 AKAKALGMTDTHFENPTGLTS-QNVSSARDLVKMVNAAYQYPLIRKFSTDRSYEVYTGKR 301
Query: 197 GKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
Y +TN V G KTGF +G +V A D+ +I V+L + + +R
Sbjct: 302 SIAYNSTNALVRNPSWEIGLQKTGFINEAGECLVMQATIHDRPMIMVLLDSSGKYSRFAD 361
Query: 256 SASLLSM 262
+ L +
Sbjct: 362 AQRLRTW 368
>gi|1864022|gb|AAB50178.1| pencillin binding protein 4 [Staphylococcus aureus]
Length = 431
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHGVVQHGHYT--------------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G T TARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQEATVSTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|313682994|ref|YP_004060732.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Sulfuricurvum
kujiense DSM 16994]
gi|313155854|gb|ADR34532.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sulfuricurvum
kujiense DSM 16994]
Length = 266
Score = 110 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 62/240 (25%), Positives = 118/240 (49%), Gaps = 12/240 (5%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
K+ + D + ++ P +PASLTK+MTA + K L P+TI++
Sbjct: 29 KVEALLVKDMTSKQMLYSKEPFKELHPASLTKVMTALLAIEHGK-----LNQPVTITREM 83
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
++ P+ + +++G + L++ +K ++KS ND A AIA S+ +E+ FV+ MN +K +G
Sbjct: 84 TKVEPTIAGYRRGDVIILEDLIKAAMIKSDNDAAKAIAISIGGSEEHFVEMMNAKAKKIG 143
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIK-----TDFPQYMHYFQIKGLEIKGKKYP 201
++ THFMN G HY+T +D+ ++ D + + + +
Sbjct: 144 MNHTHFMNPCGYDDKKHYSTPQDLLKMTEYAIKNKKFNDISRLNEHTYYSLNKHRKFYAY 203
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
N + + A G+KTG+T +G ++A A + + + V++ A R K + ++
Sbjct: 204 THNRLLNRYQYAVGVKTGYTAKAGPCLIARAKKDGKDCVIVMMNAKG--DRWKTAKNIFE 261
>gi|34557129|ref|NP_906944.1| penicillin-binding protein [Wolinella succinogenes DSM 1740]
gi|34482844|emb|CAE09844.1| PENICILLIN-BINDING PROTEIN [Wolinella succinogenes]
Length = 283
Score = 110 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 63/251 (25%), Positives = 110/251 (43%), Gaps = 13/251 (5%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ N++ + D + ++ PASLTK+MTA + K +
Sbjct: 22 LAPVVEKFENQIESLIIKDLSNKKILYAKETHKEVRPASLTKIMTAILAIESGK-----M 76
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+TI+ + PS + FK G L + +K +++SAND A I + + + FV+
Sbjct: 77 NEVVTITPEMTLVEPSKAGFKVGEKFYLRDLVKSALIQSANDSATGIGIFVGGSSENFVK 136
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF------PQYMHYFQI 190
MN +K LG+ T+F NA G H +TA D+ +L+ + H F
Sbjct: 137 MMNKKAKALGMKETNFTNAAGFDIGDHLSTAHDLMLLAEYAIKNKSFNEIVKMNKHTFSP 196
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ K N + T G+KTG+T +G ++A A +G++ L+ V+L +
Sbjct: 197 INNKNKIYTSWTHNKLLRTHKYTIGIKTGYTSKAGPCLIARAKKGEKDLLLVMLN--SKE 254
Query: 251 TRNKVSASLLS 261
R K + ++
Sbjct: 255 NRWKSAQAIFD 265
>gi|254500365|ref|ZP_05112516.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
DFL-11]
gi|222436436|gb|EEE43115.1| D-alanyl-D-alanine carboxypeptidase family [Labrenzia alexandrii
DFL-11]
Length = 320
Score = 110 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 76/206 (36%), Positives = 119/206 (57%)
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MTA + F L+ L+TP+ +S NA + + + K G+ MTL++AL ++V SAN++
Sbjct: 1 MTALITFQALERGDVDLSTPVILSHNAMDQSAAYAGLKVGNAMTLEDALYAVLVGSANEV 60
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
AVA+AE++ TE FV MN + LGL+ATHF N +G+ +ARD+A+L +
Sbjct: 61 AVALAETVAGTEAAFVDLMNAQADRLGLTATHFTNPNGLFDQKQTVSARDLAVLGRDLFQ 120
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+P Y F+ + I K+ + N + + G G+KTGF C++G NIVA A + + L
Sbjct: 121 VYPDYRRMFRTAAVTIDDKELISYNELITRYPGTLGLKTGFVCSAGRNIVAIAERDGKRL 180
Query: 240 IAVILGALDRNTRNKVSASLLSMGFY 265
+AV+LGA R++ +A L F
Sbjct: 181 LAVVLGATTGRERSERTAKLFDDAFA 206
>gi|313200023|ref|YP_004038681.1| peptidase s11 d-alanyl-d-alanine carboxypeptidase 1 [Methylovorus
sp. MP688]
gi|312439339|gb|ADQ83445.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylovorus
sp. MP688]
Length = 330
Score = 110 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 12/249 (4%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+++ TG V+ D AS+TKLMTA V+ + +
Sbjct: 76 PSNLQLASSKALIVNQETGEVLYAKSVDQATPIASVTKLMTAMVMLDA----HLPMDELL 131
Query: 81 TISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
TI++ + ++S + G+T+T L L ++ S N A A+ + F++ MN
Sbjct: 132 TINEADVDTLKGTSSRLRLGTTLTRAEMLHLALMSSENRAASALGRNYPGGLTAFIRAMN 191
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
+ LG++ + F++ G+ + +TA D+ +
Sbjct: 192 AKASMLGMAHSQFVDPTGL-NSANISTAEDLVKMVRAAYQYPEIRQVSTSASQEVPVYGL 250
Query: 196 -KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ NTN V G KTGF +G +V A Q +I V+L + + +R
Sbjct: 251 RNPINFVNTNVLVRNSDWVIGLSKTGFINEAGRCLVMQAEIAGQPMIIVLLDSYGKYSRI 310
Query: 254 KVSASLLSM 262
+ +
Sbjct: 311 GDAQRIRKW 319
>gi|253997956|ref|YP_003050019.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylovorus
sp. SIP3-4]
gi|253984635|gb|ACT49492.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Methylovorus
sp. SIP3-4]
Length = 330
Score = 110 bits (273), Expect = 4e-22, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 12/249 (4%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+++ TG V+ D AS+TKLMTA V+ + +
Sbjct: 76 PSNLQLASSKALIVNQETGEVLYAKSVDQATPIASVTKLMTAMVMLDA----HLPMDELL 131
Query: 81 TISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
TI++ + ++S + G+T+T L L ++ S N A A+ + F++ MN
Sbjct: 132 TINEADVDTLKGTSSRLRLGTTLTRAEMLHLALMSSENRAASALGRNYPGGLTAFIRAMN 191
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
+ LG++ + F++ G+ + +TA D+ +
Sbjct: 192 AKASMLGMAHSQFVDPTGL-NSANISTAEDLVKMVRAAYQYPEIRQVSTSASQEVPVYGL 250
Query: 196 -KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ NTN V G KTGF +G +V A Q +I V+L + + +R
Sbjct: 251 RNPINFVNTNVLVRNSDWVIGLSKTGFINEAGRCLVMQAEIAGQPMIIVLLDSYGKYSRI 310
Query: 254 KVSASLLSM 262
+ +
Sbjct: 311 GDAQRIRKW 319
>gi|154504396|ref|ZP_02041134.1| hypothetical protein RUMGNA_01900 [Ruminococcus gnavus ATCC 29149]
gi|153795325|gb|EDN77745.1| hypothetical protein RUMGNA_01900 [Ruminococcus gnavus ATCC 29149]
Length = 345
Score = 110 bits (273), Expect = 5e-22, Method: Composition-based stats.
Identities = 68/249 (27%), Positives = 108/249 (43%), Gaps = 24/249 (9%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYP 90
L D +V+ + P PAS TK+MTAYV + L +T+S+
Sbjct: 99 LFDVQGKNVLYADQIFEPLYPASTTKIMTAYVALKY-----GNLDDIVTVSERATDFAED 153
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G ++L + L L++ S ND AVAIAE + + + FV MN ++NLG + T
Sbjct: 154 EQVCGLQAGDQLSLRDLLNGLLLYSGNDCAVAIAEHVSGSVEAFVDKMNEEARNLGATGT 213
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK---------GKKYP 201
HF+N HG+ HYTTA D+ ++ + PQ++ +
Sbjct: 214 HFVNPHGLQNEDHYTTAYDLYLMFNACLQN-PQFVEMISQTSYTANLTSASGVPYTMTWE 272
Query: 202 NTNWAVGTF----LGAD--GMKTGFTCASGFNIVASAI-QGDQSLIAVILGALDRNTRNK 254
TN+ G G KTG T +G +V Q + I++++GA ++
Sbjct: 273 PTNYYASGDAAAPEGVKVIGGKTGTTDEAGSCLVLYEQDQQGRPYISIVMGASQKSILYD 332
Query: 255 VSASLLSMG 263
L+S G
Sbjct: 333 NMTRLMSSG 341
>gi|324497314|gb|ADY39464.1| D-alanyl-D-alanine endopeptidase [bacterium enrichment culture
clone P69-9E]
Length = 258
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 57/233 (24%), Positives = 95/233 (40%), Gaps = 12/233 (5%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNST 95
NT VI ++PD AS+TKLMTA VV L + + + E S
Sbjct: 1 NTNKVIYASHPDLVRPIASITKLMTAMVVLDA----HLPLDEKLKVDISHTPEMKGIYSR 56
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
+ S ++ N L L ++ S N A ++A F++ MN +K LG++ TH++
Sbjct: 57 VRLNSEISRKNMLLLALMSSENRAAASLAHHYPGGYDAFIRAMNAKAKALGMTNTHYVEP 116
Query: 156 HGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
G+ + +TARD+ L + + + NTN V
Sbjct: 117 TGL-SINNVSTARDLTKLLIASKQYPLIGQLSTTREEMATFANPAYTLPFRNTNHLVYRD 175
Query: 211 LG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
KTGFT A+G +V + + + V++ A + T ++ L +
Sbjct: 176 NWNIQLTKTGFTNAAGHCLVMRTVFNGKPVALVVMDAFGKYTHFADASRLRTW 228
>gi|260583975|ref|ZP_05851723.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
ATCC 700633]
gi|260158601|gb|EEW93669.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella elegans
ATCC 700633]
Length = 464
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 68/339 (20%), Positives = 137/339 (40%), Gaps = 50/339 (14%)
Query: 3 QFLVIIAMAMLSNIFPFLSIA----------------ETNKLPYYTLLDTNTGHVIAENY 46
+F I++ L + ++ +K ++D TG ++ ++
Sbjct: 27 KFFGTISVLCLIGLVKPIAAETVDIVELTKNAGYEVNPDDKPKSSIVVDAYTGRILWQDN 86
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTM 102
D +PAS++K++T Y+V +++ + L+ IT +K + Y SN+ +G
Sbjct: 87 IDEERDPASISKVLTVYLVMEAIQKGELSLSQKITATKEDEAISNIYAISNNKIIEGVEY 146
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG----- 157
++ +K+ +V S+N + +A +L K F+ MN +K LG++ T F NA G
Sbjct: 147 PIEELIKMTLVPSSNAATIMLANTLDKDSAAFIGKMNAKAKELGMNHTTFNNASGAVAEL 206
Query: 158 ----------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+ TTARD+AIL+ + +PQ + Y ++ +
Sbjct: 207 FQGYYQPEGYDASKPNQTTARDLAILAMDLMNHYPQVLQYTNSAVVKTMEGTPYEEKFDT 266
Query: 208 GTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ G +G+KTG + FN +A+ + L+ V+LG D +
Sbjct: 267 YNYSLPGAKYGIEGVNGLKTGSSGYGAFNYIATYEKDQMKLVEVVLGVGDWYNQAGEMIR 326
Query: 259 ------LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+L+ + + + + +F ++ P
Sbjct: 327 HTFGNAILNYVLEHFSFQTILPAGEHNFDGHKITTNQPL 365
>gi|238021454|ref|ZP_04601880.1| hypothetical protein GCWU000324_01354 [Kingella oralis ATCC 51147]
gi|237868434|gb|EEP69440.1| hypothetical protein GCWU000324_01354 [Kingella oralis ATCC 51147]
Length = 336
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 11/247 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
K +++ TG V+ + + AS++KLM+A V+ +
Sbjct: 87 AAQAGPMLKAQSALIMNAKTGQVLYQKNMSSVRSIASISKLMSAMVLLDA----HLDMNE 142
Query: 79 PITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
ITI++ + S G+T+T L L ++ S N A+A + FV
Sbjct: 143 QITITEAEIDRLKGTGSRLSVGTTLTRAQLLHLGLMSSENRAIHALARTYPGGMSAFVAA 202
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEI 195
MN +++LG++ + F G+ + +TA ++ + + +
Sbjct: 203 MNAKARSLGMANSRFYEPTGL-DPRNVSTALELGKMVQAASHYAKIRELTTSNYGQAYTS 261
Query: 196 KGKKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
GK N V G KTG+ +G ++V A G ++ V+LG+ +R
Sbjct: 262 NGKLQQYKNTNVLVREGLMNITLQKTGYIREAGRSMVLQAKMGQTPVVIVVLGSATSASR 321
Query: 253 NKVSASL 259
+ SL
Sbjct: 322 ASDARSL 328
>gi|167562012|ref|ZP_02354928.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
oklahomensis EO147]
Length = 379
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 51/255 (20%), Positives = 96/255 (37%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 123 LLASCGYTGAARSLLRSRAIYVVDERTGTVLIEKNANRVVPIASVTKLMTSMVALDARAP 182
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L+ P+ +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 183 ----LSRPLRVSAQDRDYEKLTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYAGG 238
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ T +++ + +
Sbjct: 239 RPAFVAAMNRKARTLGMKHTHFVNATGLSPRNVSTAHDLSRLVAAASRYPRIKTFSTDTS 298
Query: 191 KGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
K + + N KTGF +G +V + + V+LGA
Sbjct: 299 KTVFPGRGQLRYVNSDALVRAGDSNIMLQKTGFINEAGHCVVFRYAVRGRPVDIVLLGAP 358
Query: 248 DRNTRNKVSASLLSM 262
+ + +
Sbjct: 359 GSSDHIADAMKIRRW 373
>gi|319949460|ref|ZP_08023520.1| putative penicillin-binding protein [Dietzia cinnamea P4]
gi|319436886|gb|EFV91946.1| putative penicillin-binding protein [Dietzia cinnamea P4]
Length = 342
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 59/299 (19%), Positives = 103/299 (34%), Gaps = 38/299 (12%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + + D +TG ++A P + PASL K + A VV L +
Sbjct: 29 VVAPNGFTTPRDVTASAWMISDLDTGEIVAARDPHGRYRPASLIKTLLATVVLDALDPEW 88
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ S G ++ L L++ S ND AV +A ++
Sbjct: 89 I----VHVTDADLEGAEGSLVGVGPGGAYSVKRLLSGLLMSSGNDAAVVLA-HQMGGIEQ 143
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD------------- 180
++ MN + +G +T+ +G+ G +TA DM+++ T
Sbjct: 144 TLEAMNTHAAAIGARSTYAATVNGLDGPGMMSTAYDMSLIFRDAMTRPAFAEIVATQSTG 203
Query: 181 -----------FPQYMHYFQIKGLEIKGKKYP--------NTNWAVGTFLGADGMKTGFT 221
P Q G ++ N N + ++ GA G KTGFT
Sbjct: 204 FPGYPAGEGAGPPDPAEAPQNTGPTLRPDGVTVNPGFVVGNDNQLLYSYPGAIGGKTGFT 263
Query: 222 CASGFNIVASAIQGDQSLIAVIL-GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD 279
+ + +A + + L V+L G + +ASLL F + +D
Sbjct: 264 DDARHTYIGAAERDGRRLAVVLLDGTRVPAAPWQQAASLLDAAFATDGSVGSLGAGEQD 322
>gi|301384572|ref|ZP_07232990.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tomato
Max13]
Length = 313
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 54/265 (20%), Positives = 97/265 (36%), Gaps = 13/265 (4%)
Query: 7 IIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ L+N L+ + ++D T V+ + PD AS+TKLMTA
Sbjct: 20 AFSTTALANESAVLNRDPSNLHLASGSAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAM 79
Query: 64 VVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+V + + I ++ E S K GS M + L + ++ S N A +
Sbjct: 80 IVLDAKQ----SMDEVIPVNISQTPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAAS 135
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A S F+ MN +K LG+ T ++ G+ + T ++ K
Sbjct: 136 LAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKYPLL 195
Query: 183 QYMHYFQIKGLEIKGKKY-----PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + K + + Y + KTGFT +G +V ++
Sbjct: 196 SELSTTEQKTVTFRKPTYILGFSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANR 255
Query: 238 SLIAVILGALDRNTRNKVSASLLSM 262
+ VIL A + T ++ +
Sbjct: 256 PVSVVILDAFGKYTHFADASRIRKW 280
>gi|74058494|gb|AAZ98837.1| VanYD [Enterococcus gallinarum]
Length = 346
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 52/275 (18%), Positives = 102/275 (37%), Gaps = 29/275 (10%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
S S++ +++ +T + + PAS K++TA V +
Sbjct: 73 TVFPSLDSAENSLSVNITAANAIVINADTNETLYQKKSTDKIAPASTAKMITALTVLDYC 132
Query: 70 KEKKAMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES- 126
+ + S + +G T+T+ L L++ S ND A +A +
Sbjct: 133 -----SPNDEMRVGAEIELMHDDSSRAWLMQGDTLTVRQLLVALMLPSGNDAAYTLAVNT 187
Query: 127 -----------LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
++ F+ +N +K+LG ++F+ G G YTTA D+A+++
Sbjct: 188 GKKIAGDNGLSNAQSIDVFMDKVNQKAKSLGAENSNFVVPDGYDADGQYTTAYDLAVIAK 247
Query: 176 RIKTDFPQYM----HYFQIKGLEIKGKKYPNTN-----WAVGTFLGADGMKTGFTCASGF 226
D + + + Y NTN + G+KTG + G
Sbjct: 248 ACLDDPYISEIVASYSSYERWPNGREVTYNNTNELLNPNSPYYRPEVIGLKTGTSSLGGA 307
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
IV++A+ + I ++G+ N R + ++
Sbjct: 308 CIVSAAVINGNTYICAVMGS-TENDRFQDGIDIID 341
>gi|290958940|ref|YP_003490122.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22]
gi|260648466|emb|CBG71577.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei
87.22]
Length = 282
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 58/279 (20%), Positives = 116/279 (41%), Gaps = 24/279 (8%)
Query: 7 IIAMAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+IA ++ + ++A T +++ TG P S TK+MTA VV
Sbjct: 6 MIATGVVGSAPAQAAVAKPTLNAKGAFVINPATGRS-FGKTATTPRATGSTTKIMTAKVV 64
Query: 66 FSFLKEKKAMLTTPITI----SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+K L +T+ S + S++ G +T+ L L++ S D A
Sbjct: 65 L---SQKNLNLDAKVTVAGAYSDYIVKNDASSARLIVGDKVTVRQLLYGLMLPSGCDAAY 121
Query: 122 AIAESLCKTEKKFVQ------HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
A+A+ + + MN+T+K+LG++ T F + G+ + ++ +D+ L+
Sbjct: 122 ALADKFGTGSTRAARVKSFIGKMNSTAKSLGMTNTKFDSFDGISNGTNQSSPKDLTTLAR 181
Query: 176 RIKTDFPQYMHYFQIKGLE--------IKGKKYPNTNWAV-GTFLGADGMKTGFTCASGF 226
+ + + + + + NTN + T+ G G+KTG + +
Sbjct: 182 SVMKNSTFKTIVKTVTTKQKVTTKSGGYRYYTWENTNKPLLTTYNGTIGIKTGSGTEAKY 241
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+V +A + +++ +L A + R + LL+ GF
Sbjct: 242 CLVFAATRNGKTIYGTVLTATSADARLADAKKLLNYGFA 280
>gi|237786122|ref|YP_002906827.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium kroppenstedtii
DSM 44385]
gi|237759034|gb|ACR18284.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium kroppenstedtii
DSM 44385]
Length = 474
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 52/248 (20%), Positives = 95/248 (38%), Gaps = 12/248 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
E + + + D ++G VIA P + PAS+ K++ A + L +T
Sbjct: 158 PERLTVGSWLIYDVDSGDVIAAKDPHGRYRPASIFKVLLAREAID-----RLPLDRVLTA 212
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
++ + S++ T+ AL+ L+++S ND A + +L +K +
Sbjct: 213 TQEDANMEGSHAGIGPDGKYTVRQALQGLLMRSGNDCAHLLMRALGGEKKVLADL-QKRA 271
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ-----IKGLEIKG 197
G T + G+ G T+A D+A+L + + G
Sbjct: 272 DGSGTQDTRVTSYSGLDAPGLQTSAYDLALLYREAFHNKTFNEIVNTKLVDFPGYQDNPG 331
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVS 256
+ N N + T+ GA G KTGFT + A + + L + L A + + +
Sbjct: 332 FQISNDNEMLFTYEGAFGGKTGFTDDARHTYSGGAERNGRKLAVIELNATNAAGKGWDQA 391
Query: 257 ASLLSMGF 264
LL +
Sbjct: 392 TRLLDAAW 399
>gi|1586531|prf||2204232B penicillin-binding protein 4
Length = 434
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 68/280 (24%), Positives = 118/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHGVVQHGHYT--------------TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G T TARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQEATVSTARDYAILDLHVIKETPKILDFTKQLAPTTHAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|254482177|ref|ZP_05095418.1| D-alanyl-D-alanine carboxypeptidase superfamily protein [marine
gamma proteobacterium HTCC2148]
gi|214037502|gb|EEB78168.1| D-alanyl-D-alanine carboxypeptidase superfamily protein [marine
gamma proteobacterium HTCC2148]
Length = 278
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 56/264 (21%), Positives = 103/264 (39%), Gaps = 11/264 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
++ ++ F L K +LD +G++I D AS+TKLMTA VV
Sbjct: 19 SVIAGTSKFTDLPGNPDLKSASAIVLD-ESGNLIYGKDVDTVRPIASITKLMTAMVVLDS 77
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGS-TMTLDNALKLLIVKSANDIAVAIAESL 127
L +TI+K + + + T++ + L ++ S N A A+ +
Sbjct: 78 G----IGLDEKVTITKEDRDLVRLTGSRLEYGATLSRREMILLALMSSENRAATALGRTY 133
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS----WRIKTDFPQ 183
+ F+ HMN ++ LG++ +HF + G+ + T A +++ + + T+
Sbjct: 134 PGGMENFLAHMNRKARALGMTNSHFADPAGLKKENVSTAADLAKMVTAAEEYALITEATT 193
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
Y NTN + + KTG+ +G +V A + + V
Sbjct: 194 TRRKDVYPYKGRGNLTYGNTNRLLKNASWDIELSKTGYINEAGRCLVMQANIEGEDVSIV 253
Query: 243 ILGALDRNTRNKVSASLLSMGFYN 266
+L + + T S L N
Sbjct: 254 LLNSFGKLTPYGDSNRLRKWMLAN 277
>gi|154483607|ref|ZP_02026055.1| hypothetical protein EUBVEN_01311 [Eubacterium ventriosum ATCC
27560]
gi|149735517|gb|EDM51403.1| hypothetical protein EUBVEN_01311 [Eubacterium ventriosum ATCC
27560]
Length = 324
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 63/292 (21%), Positives = 122/292 (41%), Gaps = 15/292 (5%)
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
AS TK+MT V K + I S A P KKG L + L
Sbjct: 1 MPMASTTKIMTCIVALESGKMNQI-----IKASSKAVSMPKVKMYAKKGEQYYLKDLLYA 55
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
++++S ND A+ +AE + ++++F + MN +K +G T+F+ +G+ HY+TA DM
Sbjct: 56 MMLESFNDAAMIVAEGIGGSQEEFAKMMNKKAKEIGAKNTNFVTPNGLDADNHYSTAYDM 115
Query: 171 -----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+ + Y + N + + A G+KTGFT +G
Sbjct: 116 ALIGAYATKNKQFNEITNTKSYSFTDVSAKRSITVNNKDMFLAMDNEAIGIKTGFTGKAG 175
Query: 226 FNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+ V + + ++ +L +++ + K + +L++ G ++K I K F
Sbjct: 176 YCFVGAVKSNGRHFVSCVLACGWPPNKSYKWKDTTALMNHGKREYNEKKIIASGTK-FQI 234
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
+ + I+ V +I+ + +K + ++ + +K ++ N I
Sbjct: 235 EIPNGTKKKINVGVSEGYTTLISEDDNVKSETN-FNYKLPIKKRDVVGNIII 285
>gi|260890742|ref|ZP_05902005.1| putative D-alanyl-D-alanine carboxypeptidase [Leptotrichia
hofstadii F0254]
gi|260859620|gb|EEX74120.1| putative D-alanyl-D-alanine carboxypeptidase [Leptotrichia
hofstadii F0254]
Length = 423
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 85/363 (23%), Positives = 154/363 (42%), Gaps = 28/363 (7%)
Query: 1 MRQFL--------VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ L +I++MA L+ + E L+ G++I E+
Sbjct: 12 MKKKLNIGRRSKKIIMSMAFLTVSALSFASGEDYYDYKSLLIGDINGNIIKEDNSSAVRP 71
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
AS+TK+MT+ + +K + +T+S A+ P G T+ + LK I
Sbjct: 72 LASVTKIMTSILTLDKIKNGQISYEDKVTVSAKAASV-PYGIKLTAGKQYTVRDLLKATI 130
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT-----A 167
+KS+N+ A A+AE + FV MN +++ GL++ + + HG+ + A
Sbjct: 131 IKSSNNAAYALAEYVGGDVSNFVHSMNEKARSYGLNSLRYCSPHGLPPSYTGSCMDQGNA 190
Query: 168 RDMAILSWRIKTDFPQYMHY--FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+D+ L+ D+ +Y+++ + ++ K +TN +G LG DG+KTG+ A+G
Sbjct: 191 KDLYKLAQITLKDYSEYLNFSKNKTDYVDNGNTKVTSTNALLGNVLGVDGIKTGYHDAAG 250
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY-----IIKDF 280
NIV +A +G+ +IA+ILG+ RN + A ++ + N RK I+
Sbjct: 251 SNIVLTANRGNDRMIAIILGSNRAKDRNAIGAKEINDYYANGYARKASVKNNSLRPIEST 310
Query: 281 YQQNLSNEVPNISEEVCTTQ-------KEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
Y + + N Q K N + + +K + N
Sbjct: 311 YNTDNTETSKNSKGNSKVDQFFNMIFGKNHNNSAGKKMKIINKNDVVATATIGDVKYNLY 370
Query: 334 TKK 336
K
Sbjct: 371 PTK 373
>gi|160892647|ref|ZP_02073437.1| hypothetical protein CLOL250_00177 [Clostridium sp. L2-50]
gi|156865688|gb|EDO59119.1| hypothetical protein CLOL250_00177 [Clostridium sp. L2-50]
Length = 323
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 18/261 (6%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
L+ + + L++ +T + + PAS+TKLMT +V +++ L
Sbjct: 60 ALADENYSAVKSAVLINDSTKEALVVHNAHDRIYPASMTKLMTGLLVMESIEDGTLSLDD 119
Query: 79 PITISKNASEYPPS--NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
IT+S + + S KG ++T+ N L L+++S ND V +AE + +E FV+
Sbjct: 120 TITLSHTVTFQEDNVGVSDLTKGCSVTVKNLLYGLLIRSYNDCGVLLAEKIAGSEDAFVE 179
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY---------MHY 187
MN + LG + THF+N HG+ HYTTA D+ ++ Y Y
Sbjct: 180 KMNEKAFELGATNTHFVNCHGLHSDDHYTTAYDLYLIFSEFIKHDMAYLIDSLDSYDFTY 239
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGM-----KTGFTCASGFNIVASAIQG--DQSLI 240
G E + G F +G K+G T A+G ++ ++ +
Sbjct: 240 TDETGAEKSVTLQATNGYISGEFKFPEGYSLGSWKSGTTTAAGNCLILEFVKDDTGDKYV 299
Query: 241 AVILGALDRNTRNKVSASLLS 261
AVI GA DR+T L++
Sbjct: 300 AVIAGAEDRDTLYNDMTMLIN 320
>gi|291546150|emb|CBL19258.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. SR1/5]
Length = 388
Score = 109 bits (272), Expect = 6e-22, Method: Composition-based stats.
Identities = 64/252 (25%), Positives = 108/252 (42%), Gaps = 24/252 (9%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
LL+ + V+ + PAS+TK+MTA + + + +TIS+
Sbjct: 139 DSQSGVLLNLSDKKVLYAKGAYNKVYPASITKIMTAMLALKY-----GNMDDTVTISQEN 193
Query: 87 SEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ F+ G +T+D L L+V SAND A AIAE + + KFV+ MN+ +
Sbjct: 194 VTLESGSQVAGFQAGDQVTMDQLLHCLLVYSANDAASAIAEHIGGSTDKFVEMMNSFAAE 253
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG------- 197
LG + THF N HG+ HYTT D+ ++ ++P++ Q+ +
Sbjct: 254 LGCTGTHFTNPHGLQDENHYTTPYDIYLMLKEAL-NYPEFTDITQMASYTVSYKHSDGSD 312
Query: 198 --------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALD 248
Y A + G KTG T +G + + + I++++GA
Sbjct: 313 ASATLPATDHYLTGEAATPKDVTILGGKTGTTDKAGNCLALLSQNAYGKPFISIVMGASS 372
Query: 249 RNTRNKVSASLL 260
++ + SLL
Sbjct: 373 KDVLYQEMTSLL 384
>gi|330967602|gb|EGH67862.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 311
Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 54/265 (20%), Positives = 97/265 (36%), Gaps = 13/265 (4%)
Query: 7 IIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ L+N L+ + ++D T V+ + PD AS+TKLMTA
Sbjct: 18 AFSTTALANESAVLNRDPSNLHLASGSAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAM 77
Query: 64 VVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+V + + I ++ E S K GS M + L + ++ S N A +
Sbjct: 78 IVLDAKQ----SMDEVIPVNISQTPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAAS 133
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A S F+ MN +K LG+ T ++ G+ + T ++ K
Sbjct: 134 LAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKYPLL 193
Query: 183 QYMHYFQIKGLEIKGKKY-----PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + K + + Y + KTGFT +G +V ++
Sbjct: 194 SELSTTEQKTVTFRKPTYILGFSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANR 253
Query: 238 SLIAVILGALDRNTRNKVSASLLSM 262
+ VIL A + T ++ +
Sbjct: 254 PVSVVILDAFGKYTHFADASRIRKW 278
>gi|28869869|ref|NP_792488.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213969996|ref|ZP_03398129.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato T1]
gi|302060754|ref|ZP_07252295.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tomato
K40]
gi|302132778|ref|ZP_07258768.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28853114|gb|AAO56183.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213925321|gb|EEB58883.1| penicillin-binding protein 7 [Pseudomonas syringae pv. tomato T1]
Length = 311
Score = 109 bits (271), Expect = 6e-22, Method: Composition-based stats.
Identities = 54/265 (20%), Positives = 97/265 (36%), Gaps = 13/265 (4%)
Query: 7 IIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ L+N L+ + ++D T V+ + PD AS+TKLMTA
Sbjct: 18 AFSTTALANESAVLNRDPSNLHLASGSAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAM 77
Query: 64 VVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+V + + I ++ E S K GS M + L + ++ S N A +
Sbjct: 78 IVLDAKQ----SMDEVIPVNISQTPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAAS 133
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A S F+ MN +K LG+ T ++ G+ + T ++ K
Sbjct: 134 LAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKYPLL 193
Query: 183 QYMHYFQIKGLEIKGKKY-----PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + K + + Y + KTGFT +G +V ++
Sbjct: 194 SELSTTEQKTVTFRKPTYILGFSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANR 253
Query: 238 SLIAVILGALDRNTRNKVSASLLSM 262
+ VIL A + T ++ +
Sbjct: 254 PVSVVILDAFGKYTHFADASRIRKW 278
>gi|262183779|ref|ZP_06043200.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium aurimucosum
ATCC 700975]
Length = 406
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 53/275 (19%), Positives = 102/275 (37%), Gaps = 23/275 (8%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + D +TG +IA P+ + PAS+ K + A VV L IT +
Sbjct: 87 DVVASAWMVSDLDTGEIIAMKDPNGRYRPASIIKALLALVVIEE-----LPLDQRITATL 141
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ + S T++ L+ L++ S ND A A+A+++ E+ + +N ++
Sbjct: 142 DDASVEGSAVGLGPDGVYTVEQLLQGLLMASGNDAAHALAQAVGGDEEAL-EKVNAKAQE 200
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-----GLEIKGKK 199
+G +T + G+ G T+A D++++ + E+ G +
Sbjct: 201 IGTRSTVAASYSGLDAAGMSTSAADISLIYRAAFANDTFARIVDTEHVDFPGWGEMPGYE 260
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N G KTG+T + V + + + L AV+L
Sbjct: 261 LWNDNGLFLNDPDGIGGKTGYTEDAHHTFVGAINRDGRRLQAVLLDTT------------ 308
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
+ GF + + D + V + +
Sbjct: 309 VEHGFRAWEQAQMLLDEASDVRPGDGVGLVDDFAA 343
>gi|227832361|ref|YP_002834068.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium aurimucosum
ATCC 700975]
gi|227453377|gb|ACP32130.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium aurimucosum
ATCC 700975]
Length = 613
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 53/275 (19%), Positives = 102/275 (37%), Gaps = 23/275 (8%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + D +TG +IA P+ + PAS+ K + A VV L IT +
Sbjct: 294 DVVASAWMVSDLDTGEIIAMKDPNGRYRPASIIKALLALVVIEE-----LPLDQRITATL 348
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ + S T++ L+ L++ S ND A A+A+++ E+ + +N ++
Sbjct: 349 DDASVEGSAVGLGPDGVYTVEQLLQGLLMASGNDAAHALAQAVGGDEEAL-EKVNAKAQE 407
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-----GLEIKGKK 199
+G +T + G+ G T+A D++++ + E+ G +
Sbjct: 408 IGTRSTVAASYSGLDAAGMSTSAADISLIYRAAFANDTFARIVDTEHVDFPGWGEMPGYE 467
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N G KTG+T + V + + + L AV+L
Sbjct: 468 LWNDNGLFLNDPDGIGGKTGYTEDAHHTFVGAINRDGRRLQAVLLDTT------------ 515
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
+ GF + + D + V + +
Sbjct: 516 VEHGFRAWEQAQMLLDEASDVRPGDGVGLVDDFAA 550
>gi|229135841|ref|ZP_04264610.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
gi|228647630|gb|EEL03696.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
Length = 301
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 59/269 (21%), Positives = 106/269 (39%), Gaps = 12/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F +I + + Y +D +TG ++ PAS+ K+MT
Sbjct: 37 FTGMIFFSYAQRQQVVRADQPNITGQYGITIDADTGEILYGKREGERSYPASIGKMMTTL 96
Query: 64 VVFSFLKEKKAMLTTPITISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
++ +KE IT+++NA + + G + D ALKL+++ SA+ IA
Sbjct: 97 LLLENVKE-----DEEITVTENAIKTESQSKKIKLRAGEKLKRDEALKLMLIISADPIAE 151
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+IAE + ++ +FV+ MN +K LG F NA G G+ + D+AI++
Sbjct: 152 SIAEHIAGSKNEFVKMMNARAKELGTKHATFKNASGADALGNKVSPYDIAIITKESLKYP 211
Query: 182 PQYMHYFQIK---GLEIKGKKYPNTNWAV-GTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ I + K N A G K+G + + +V + +
Sbjct: 212 IVLEYMNSIHTTLHTSERSPKIANYGREELYDDPYAIGSKSGLSALGKYTVVTVDEKDGK 271
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + R + + F
Sbjct: 272 RVINVVL-SSTRTQLYPDTKKMSHYAFQQ 299
>gi|253579420|ref|ZP_04856690.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849518|gb|EES77478.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 306
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 50/236 (21%), Positives = 97/236 (41%), Gaps = 11/236 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
P L+ G ++ E + PAS+TK+MT + + +T +
Sbjct: 41 INSPNAILMQARGGKILGEINGEAQIYPASMTKIMTVILGIENFDDLDEKITLTNEMFSG 100
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
E + + F+ G + + + L ++ S + +A+A+++ +E F + MN ++ L
Sbjct: 101 LYEQDATQAGFQPGEEVRVIDLLYGAMLPSGAECCIALADTISGSEADFAELMNKKARKL 160
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE------IKGKK 199
G+ THF ++ G+ HY+T +D+A+L + + G
Sbjct: 161 GMENTHFCDSTGLHNPDHYSTVKDIAVLMKYCIKNDTFREIVETSRHSTGVTNIHPDGIT 220
Query: 200 YPNTNWAVGTFLGAD-----GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
Y +T + + G KTG+T +G +V+ A + I V GA +
Sbjct: 221 YYSTMFKNLSDPTVTGGKILGGKTGYTSEAGHCLVSFAEIEGREYIFVSAGASGAD 276
>gi|313897406|ref|ZP_07830949.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
HGF2]
gi|312957776|gb|EFR39401.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp.
HGF2]
Length = 327
Score = 109 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 62/289 (21%), Positives = 114/289 (39%), Gaps = 19/289 (6%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ Y +L ++ E D + AS++K+MTA + + L +
Sbjct: 17 SVHAESYVVLSGADNTIVEEKNKDEKQSVASISKIMTAVIAIEHGQ-----LDESFAVDD 71
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
++ S+ K+G +T+ + L L+++S ND AV IA+ + +++ FV+ MN+ +
Sbjct: 72 EINKAYGSSVYLKQGQQVTMRDLLYGLMLRSGNDAAVEIAKHVAGSQEAFVELMNHKAAE 131
Query: 145 LGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+S T F N G+ G+ +TA DMA+L + ++ N
Sbjct: 132 IGMSNTTFSNPSGLDEEDGGNISTANDMAVLMSYAMKNKEFRTITGSKYYTTDWNMRWKN 191
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N + + G KTGFT +G +V++A I V L R
Sbjct: 192 KNRLLFDYPFTVGGKTGFTKKAGRTLVSAAEHDGVESIVVTL-------REGD-----DF 239
Query: 263 GFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
F+ + + + + V V T K ++ + K
Sbjct: 240 AFHEQKHTEVFQKMDVVTIMRKGDYTVNGRKFHVPETLKVTLHKDGSDK 288
>gi|288941902|ref|YP_003444142.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Allochromatium
vinosum DSM 180]
gi|288897274|gb|ADC63110.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Allochromatium
vinosum DSM 180]
Length = 353
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 98/249 (39%), Gaps = 13/249 (5%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
A ++D G+V+ AS+TKLMTA VV L TPI
Sbjct: 99 AALNLHSVSAMIVD-ERGNVLYSKNARAVRPIASITKLMTAMVVLDTG----VSLKTPIR 153
Query: 82 ISKNASEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHM 138
I ++ + + + ++ + + I+ S N A A+ + + +F+Q M
Sbjct: 154 IVEDDRDRLKNSRSRLRINDTVLSRREMIMVAIMSSDNRAAHALGRTTFRGGTPEFIQAM 213
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLE 194
N ++ LG+ T F+++ G+ T + ++ ++ + + +
Sbjct: 214 NRKARALGMRNTRFVDSSGLDPRNQSTAEDLVKMVRAASNYPLLHEITALGQMTLRPFSD 273
Query: 195 IKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+Y NTN V + + KTGF +G +V A ++SL V LG+ + +
Sbjct: 274 GTALQYRNTNPLVRSPEWTVEVSKTGFINEAGRCLVMRARIDNRSLYMVFLGSNGKLSTV 333
Query: 254 KVSASLLSM 262
S +
Sbjct: 334 GDSNRVRDW 342
>gi|157833819|pdb|1SKF|A Chain A, Crystal Structure Of The Streptomyces K15
Dd-Transpeptidase
Length = 262
Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats.
Identities = 59/262 (22%), Positives = 104/262 (39%), Gaps = 24/262 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI- 82
T ++ TG + D + S TK+MTA VV + L +TI
Sbjct: 4 PTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQS---NLNLDAKVTIQ 60
Query: 83 ---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ--- 136
S S + G +T+ L L++ S D A A+A+ + +
Sbjct: 61 KAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKS 120
Query: 137 ---HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN + NLGL THF + G+ +Y+T RD+ ++ + + K
Sbjct: 121 FIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIAS-SAMKNSTFRTVVKTKAY 179
Query: 194 EIK----------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K + NTN + ++ GA G+KTG + + +V +A +G +++I +
Sbjct: 180 TAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTV 239
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
L + R + +++ GF
Sbjct: 240 LASTSIPARESDATKIMNYGFA 261
>gi|170691174|ref|ZP_02882340.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
graminis C4D1M]
gi|170144423|gb|EDT12585.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
graminis C4D1M]
Length = 410
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 10/243 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ ++D T V+ E D AS++KLMTA V A L + ++
Sbjct: 167 LRARSVFVVDERTQTVLTEKQADRVMPIASVSKLMTAVVALDTRHALDAPLNVTV---QD 223
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
+ S GS ++ + L + ++ S N A A++ FV MN ++ L
Sbjct: 224 QDFDKFTGSRLSVGSVLSRHDMLHIALMSSENRAAAALSRDYAGGRPGFVAAMNAKARAL 283
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
G+ T F+N G+ + +TARD+A L + + + + G Y
Sbjct: 284 GMRHTSFVNGTGL-SPHNVSTARDLARLVAAASRYPLIRAYSTDRDQWVFPGGPRARLSY 342
Query: 201 PNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N+N V + KTGF +G +V I + + V+LGA + +
Sbjct: 343 HNSNALVRSGDRSIVLQKTGFINEAGHCVVVRMIVHGRPIDIVVLGAPGPHDHIADVIRI 402
Query: 260 LSM 262
Sbjct: 403 RRW 405
>gi|160938825|ref|ZP_02086176.1| hypothetical protein CLOBOL_03719 [Clostridium bolteae ATCC
BAA-613]
gi|158437788|gb|EDP15548.1| hypothetical protein CLOBOL_03719 [Clostridium bolteae ATCC
BAA-613]
Length = 325
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 60/253 (23%), Positives = 98/253 (38%), Gaps = 22/253 (8%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L D + + PAS+TK+MTA V L + ++ +
Sbjct: 74 VTSEAAALFDVSDRETLYSKEAFERLYPASITKVMTALVAIKN-----GDLNARVVVTDD 128
Query: 86 ASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
A + + G T+TL+ L L++ S ND AIA + + KF MN +
Sbjct: 129 AVITESGATLCGIEPGDTLTLEQLLYGLMLPSGNDAGAAIAVHIAGSIDKFADMMNQEAA 188
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--------------FPQYMHYFQ 189
+LG + THF+N HG+ HYTTA D+ ++
Sbjct: 189 SLGATGTHFVNPHGLNDPDHYTTAYDLYLIFNEALKYPVFRQIVGTTSYTANYHDKDSQA 248
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI-VASAIQGDQSLIAVILGALD 248
+ G + L G KTG T A+G+ + +A+ Q D+ I+V+L +
Sbjct: 249 VTKTWKGGNWFMTRERETPEGLTVFGGKTGTTNAAGYCLIMATRDQNDKEYISVVLKSDS 308
Query: 249 RNTRNKVSASLLS 261
R +++S
Sbjct: 309 RPGLYDNMTNIIS 321
>gi|1262137|emb|CAA62899.1| penicillin-binding protein 4 [Staphylococcus aureus]
Length = 431
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----S 92
TG ++ + D WNPAS+TKLMT Y+ + + + L +T++ S
Sbjct: 57 QTGQLLYQYNIDTKWNPASMTKLMTMYLTLEAVNKGQLSLDDTVTMTNKEYIMSTLPELS 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N+ G T+ + L++ + S+N A+ +A+ + K FV MNN +K +G+ THF
Sbjct: 117 NTKLYPGQVWTIADLLQITVSNSSNAAALILAKKVSKNTSDFVDLMNNKAKAIGMKNTHF 176
Query: 153 MNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
+N G Q TTARD AIL + + P+ + + +
Sbjct: 177 VNPTGAENSRLRTFAPTKYKDQERTVTTARDYAILDLHVIKETPKILDFTKQLAPTTLAV 236
Query: 199 KYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD------ 248
Y N++ + G DG+KTG + + +N + +G + VI+GA D
Sbjct: 237 TYYTFNFSLEGAKMSLPGTDGLKTGSSDTANYNHTITTKRGKFRINQVIMGAGDYKNLGG 296
Query: 249 RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
RN + +L+ F K ++ + + E
Sbjct: 297 EKQRNMMGNALMERSFDQYKYVKILSKGEQRINGKKYYVE 336
>gi|227505356|ref|ZP_03935405.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium striatum ATCC
6940]
gi|227198058|gb|EEI78106.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium striatum ATCC
6940]
Length = 419
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 57/301 (18%), Positives = 101/301 (33%), Gaps = 23/301 (7%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + D +TG +IA P+ + PAS+ K + A VV L + +
Sbjct: 103 DVVASAWMVSDIDTGEIIAMKDPNGRYRPASIIKALLALVVIDE-----VPLDKKVKATM 157
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ S T++ L+ L++ S ND A A+A L E+ + +N +K
Sbjct: 158 KDASIEGSAVGIGPDGEYTVEQLLQGLLMASGNDAAHALAGQLGGDEEA-SKKVNALAKK 216
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-----GLEIKGKK 199
LG +T + G+ G T+A D++I+ + E+ G +
Sbjct: 217 LGTRSTRAASYSGLDSAGMSTSAEDISIIYRAAFRNKTFARIVDTEHVEFPGWGELPGYE 276
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N N G KTG+T + V + +G + L AVIL
Sbjct: 277 LWNDNGLFLNDPDGIGGKTGYTEDAHHTFVGALDRGGRRLQAVILDTT------------ 324
Query: 260 LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ GF + + + + + T + +H
Sbjct: 325 VEHGFRAWQQAQMLLDEAYKVKPGEGVGTLSDAAAPTSNTSTATKTKEPAPTTSPSASAH 384
Query: 320 F 320
Sbjct: 385 K 385
>gi|71906306|ref|YP_283893.1| murein-DD-endopeptidase [Dechloromonas aromatica RCB]
gi|71845927|gb|AAZ45423.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Dechloromonas aromatica RCB]
Length = 359
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 8/241 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK- 84
++D +TG + E PD AS++KLMTA VV K L +TI
Sbjct: 109 LYSASALVIDQSTGQAMLEKQPDLVVPIASISKLMTAMVVLDA----KLDLQEVVTIGDA 164
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ + S G+TMT + A+ L ++ S N A ++ FVQ MN ++
Sbjct: 165 DVDGLKGTRSRLPVGTTMTREAAMLLALMSSENRAAHSLGRHYPGGLPAFVQAMNKKAQA 224
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK--GKKYPN 202
LG+ + F G+ + T +++ + + +E+ + + N
Sbjct: 225 LGMYNSRFEEPTGLSSNNVSTAHDLARMVAAAARYPEIRQYSTTAEAKVELNGRIRDFHN 284
Query: 203 TNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
TN V G KTG+ +G +V A D+ ++ V+L + + TR + +
Sbjct: 285 TNALVRNDNWEIGVSKTGYISEAGRCLVMQARVADKPVVIVLLDSNGKMTRVGDANRIKR 344
Query: 262 M 262
Sbjct: 345 W 345
>gi|7766851|pdb|1ES2|A Chain A, S96a Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 24/262 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI- 82
T ++ TG + D + S TK+MTA VV + L +TI
Sbjct: 4 PTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQS---NLNLDAKVTIQ 60
Query: 83 ---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ--- 136
S S + G +T+ L L++ + D A A+A+ + +
Sbjct: 61 KAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPAGCDAAYALADKYGSGSTRAARVKS 120
Query: 137 ---HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN + NLGL THF + G+ +Y+T RD+ ++ + + K
Sbjct: 121 FIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIAS-SAMKNSTFRTVVKTKAY 179
Query: 194 EIK----------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K + NTN + ++ GA G+KTG + + +V +A +G +++I +
Sbjct: 180 TAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTV 239
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
L + R + +++ GF
Sbjct: 240 LASTSIPARESDATKIMNYGFA 261
>gi|7766854|pdb|1ES5|A Chain A, S216a Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 59/262 (22%), Positives = 104/262 (39%), Gaps = 24/262 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI- 82
T ++ TG + D + S TK+MTA VV + L +TI
Sbjct: 4 PTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQS---NLNLDAKVTIQ 60
Query: 83 ---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ--- 136
S S + G +T+ L L++ S D A A+A+ + +
Sbjct: 61 KAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKS 120
Query: 137 ---HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN + NLGL THF + G+ +Y+T RD+ ++ + + K
Sbjct: 121 FIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIAS-SAMKNSTFRTVVKTKAY 179
Query: 194 EIK----------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K + NTN + ++ GA G+KTG + + +V +A +G +++I +
Sbjct: 180 TAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGAGPEAKYCLVFAATRGGKTVIGTV 239
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
L + R + +++ GF
Sbjct: 240 LASTSIPARESDATKIMNYGFA 261
>gi|167760670|ref|ZP_02432797.1| hypothetical protein CLOSCI_03055 [Clostridium scindens ATCC 35704]
gi|167661557|gb|EDS05687.1| hypothetical protein CLOSCI_03055 [Clostridium scindens ATCC 35704]
Length = 324
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 11/239 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
E PY L D ++G+ +AE+ PASLTK+MTA + ++ + ++T P
Sbjct: 46 ENLYSPYSILTDLDSGNALAEHNAQDRIYPASLTKIMTAILAIENTQDMEEVITLPTDFF 105
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + F+ G + L + L +++ S + +A E + +E+ FV+ MN +
Sbjct: 106 SKLYIENASMAGFQPGEQVRLKDLLYGMLLPSGAECCLAFCERIAGSEEAFVRLMNKKAG 165
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
LGL THF N+ G+ HY+T +D++ L + + + + +++P
Sbjct: 166 ELGLENTHFCNSTGLHDSEHYSTVKDISALLQYALKNETFRAAFTSSQYSTLPSEQHPKG 225
Query: 204 N-WAVGTFLGADGMK----------TGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ F + K TG+T +G + + A + +I V A +
Sbjct: 226 FTFYSTMFECMESTKFTGGKIIGGKTGYTKEAGLCLASLAEINGKEVILVTANADGTHQ 284
>gi|268610245|ref|ZP_06143972.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus flavefaciens
FD-1]
Length = 471
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/377 (17%), Positives = 130/377 (34%), Gaps = 42/377 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--------LPYYTLLDTNTGHVIAENYPDHPWN 52
M++ IA +++ F AE +++ + VI E D
Sbjct: 1 MKKLFAAIASVVMAVPFISAPKAEAISFPLKNQIQSESAIVINMDVDTVIHEKNADTKQM 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNAL 108
P L +M A V A +T ++ + +E + +T+ + L
Sbjct: 61 PGPLVNIMAAVVCLENCPNINAEVTVHSSVYEYLNETEYKDDLRWADIYDEDVLTVTDLL 120
Query: 109 KLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+++ S+ + + +A + F++ MN+ ++ +GL THF NA G+ YTTA
Sbjct: 121 YAMMLTSSMEASETLAYYVGDGNTDNFIKMMNDKAEEIGLENTHFTNATGMYDTAQYTTA 180
Query: 168 RDMAILSWRIK----------TDFPQYMHYFQIKGLEIKGKKYPNTNWAV-----GTFLG 212
RDMA L+ T + + + ++N + + G
Sbjct: 181 RDMAKLTQYALTVPLFETIATTFQYNPSIPNPDRHKSHEEWIWTHSNGMMDPSSGDYYSG 240
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-------RNKVSASLLSMGFY 265
G+KT +G NI+A A + +AV+L A + ++ F
Sbjct: 241 MKGIKTANLEMAGRNIIAMASRDGNKYLAVLLKAPLNDADGNPAFYHFSDCMNVFDWAFK 300
Query: 266 NKTDRKKINYIIKDFYQ-----QNLSNEVPNISEEVCTTQKEIINYNT--QMKEAKDKES 318
+ + + + + + +E+ + ++ +T + K K S
Sbjct: 301 HFSYQTVLANTAEVGELPVKLADGNDYVLARPKDEISLLWYDEVDTSTISKDKIEWYKNS 360
Query: 319 HFIDFEKITLLKNKITK 335
K L +
Sbjct: 361 LQAPVTKDEPLGKVTLE 377
>gi|307726448|ref|YP_003909661.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. CCGE1003]
gi|307586973|gb|ADN60370.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. CCGE1003]
Length = 415
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/243 (22%), Positives = 90/243 (37%), Gaps = 10/243 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ ++D T V+ E D AS++KLMTA V A L + ++
Sbjct: 171 LRARSVFVIDERTQTVLTEKQADTVMPIASISKLMTAVVSLDAKHALDAPLNVTV---QD 227
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
+ S GS + + L + ++ S N A A++ FV MN ++ L
Sbjct: 228 QDFDKFTGSRLSVGSVLPRHDMLHIALMSSENRAAAALSRDYAGGRPGFVAAMNAKARAL 287
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
G+ T F+N G+ + +TARD+A L + + + G Y
Sbjct: 288 GMRHTRFVNGTGL-SPHNVSTARDLARLVAAASRYPLIRAYSTDRAQLVFPGGRRASLSY 346
Query: 201 PNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N+N G KTGF +G +V + + + V+LGA +
Sbjct: 347 HNSNALVRGGDRSIVLQKTGFINEAGHCVVVRMMVHGRPIDIVVLGAPGPRDHLADVIRI 406
Query: 260 LSM 262
Sbjct: 407 RRW 409
>gi|237738804|ref|ZP_04569285.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 2_1_31]
gi|229423907|gb|EEO38954.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 2_1_31]
Length = 419
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/240 (24%), Positives = 95/240 (39%), Gaps = 10/240 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ D N G+VI D + AS+TK+MT V F + L + ISK +
Sbjct: 165 RAVLVGDLN-GNVIFSKNADTMYPLASVTKVMTLLVTFDEINAGNISLNDSVRISKTPLK 223
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLG- 146
Y S K+G L++ +K V SAN+ AIAE + + + FV MN K LG
Sbjct: 224 YGGSGIALKEGQIFVLEDLIKASAVYSANNATYAIAEYVGEGSVFNFVAKMNKKLKQLGL 283
Query: 147 LSATHFMNAHGVVQHGHYTTARD------MAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+ + G+ + + +K + + +
Sbjct: 284 QNDIKYHTPAGLPTRNTKMPMDEGTPRGIYKLSIEALKYHKYIEIAGIKNTKIYNGKISI 343
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N +G G G+KTGF + +NI + LI V++G TR+ + +++
Sbjct: 344 RNRNHLIGE-DGVYGIKTGFHKEAKYNITVAVKFEGIDLIIVVMGGETYKTRDDLVRTII 402
>gi|217424602|ref|ZP_03456100.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
576]
gi|237508406|ref|ZP_04521121.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei MSHR346]
gi|217392526|gb|EEC32550.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
576]
gi|235000611|gb|EEP50035.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei MSHR346]
Length = 373
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 113 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 168
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 169 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 228
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 229 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 287
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 288 RTLYYHSTNVLLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 347
Query: 255 VSASL 259
+A L
Sbjct: 348 DAARL 352
>gi|167921747|ref|ZP_02508838.1| family S11 unassigned peptidase [Burkholderia pseudomallei BCC215]
Length = 350
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 90 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 145
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 146 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 205
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 206 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 264
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 265 RTLYYHSTNVLLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 324
Query: 255 VSASL 259
+A L
Sbjct: 325 DAARL 329
>gi|167913835|ref|ZP_02500926.1| family S11 unassigned peptidase [Burkholderia pseudomallei 112]
Length = 493
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 102 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 157
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 158 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 217
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 218 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 276
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 277 RTLYYHSTNVLLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 336
Query: 255 VSASL 259
+A L
Sbjct: 337 DAARL 341
>gi|167905525|ref|ZP_02492730.1| family S11 unassigned peptidase [Burkholderia pseudomallei NCTC
13177]
Length = 365
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 105 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 160
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 161 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 220
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 221 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 279
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 280 RTLYYHSTNVLLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 339
Query: 255 VSASL 259
+A L
Sbjct: 340 DAARL 344
>gi|167725751|ref|ZP_02408987.1| family S11 unassigned peptidase [Burkholderia pseudomallei DM98]
Length = 281
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 21 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 76
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 77 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 136
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 137 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 195
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 196 RTLYYHSTNVLLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 255
Query: 255 VSASL 259
+A L
Sbjct: 256 DAARL 260
>gi|167827077|ref|ZP_02458548.1| family S11 unassigned peptidase [Burkholderia pseudomallei 9]
gi|167897149|ref|ZP_02484551.1| family S11 unassigned peptidase [Burkholderia pseudomallei 7894]
Length = 349
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 89 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 144
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 145 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 204
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 205 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 263
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 264 RTLYYHSTNVLLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 323
Query: 255 VSASL 259
+A L
Sbjct: 324 DAARL 328
>gi|254296746|ref|ZP_04964200.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 406e]
gi|157806643|gb|EDO83813.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 406e]
Length = 350
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 90 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 145
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 146 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 205
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 206 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 264
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 265 RTLYYHSTNVLLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 324
Query: 255 VSASL 259
+A L
Sbjct: 325 DAARL 329
>gi|134283054|ref|ZP_01769756.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 305]
gi|226196446|ref|ZP_03792027.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pakistan 9]
gi|254198846|ref|ZP_04905264.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei S13]
gi|254263948|ref|ZP_04954813.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1710a]
gi|134245702|gb|EBA45794.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 305]
gi|169657018|gb|EDS88412.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei S13]
gi|225931322|gb|EEH27328.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pakistan 9]
gi|254214950|gb|EET04335.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1710a]
Length = 373
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 113 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 168
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 169 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 228
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 229 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 287
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 288 RTLYYHSTNVLLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 347
Query: 255 VSASL 259
+A L
Sbjct: 348 DAARL 352
>gi|53721488|ref|YP_110473.1| peptidase [Burkholderia pseudomallei K96243]
gi|76819779|ref|YP_337155.1| peptidase [Burkholderia pseudomallei 1710b]
gi|52211902|emb|CAH37907.1| family S11 unassigned peptidase [Burkholderia pseudomallei K96243]
gi|76584252|gb|ABA53726.1| family S11 unassigned peptidase [Burkholderia pseudomallei 1710b]
Length = 362
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 102 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 157
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 158 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 217
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 218 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 276
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 277 RTLYYHSTNVLLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 336
Query: 255 VSASL 259
+A L
Sbjct: 337 DAARL 341
>gi|167741512|ref|ZP_02414286.1| family S11 unassigned peptidase [Burkholderia pseudomallei 14]
gi|167818703|ref|ZP_02450383.1| family S11 unassigned peptidase [Burkholderia pseudomallei 91]
Length = 349
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 89 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 144
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 145 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 204
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 205 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 263
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 264 RTLYYHSTNVLLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 323
Query: 255 VSASL 259
+A L
Sbjct: 324 DAARL 328
>gi|126445342|ref|YP_001061703.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 668]
gi|126224833|gb|ABN88338.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
668]
Length = 350
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 90 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 145
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 146 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 205
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 206 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 264
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 265 RTLYYHSTNVLLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 324
Query: 255 VSASL 259
+A L
Sbjct: 325 DAARL 329
>gi|254185373|ref|ZP_04891961.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1655]
gi|254187257|ref|ZP_04893771.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pasteur 52237]
gi|157934939|gb|EDO90609.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pasteur 52237]
gi|184209608|gb|EDU06651.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1655]
Length = 350
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 90 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 145
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 146 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 205
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 206 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 264
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 265 RTLYYHSTNVLLRDNAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 324
Query: 255 VSASL 259
+A L
Sbjct: 325 DAARL 329
>gi|187477411|ref|YP_785435.1| D-alanyl-D-alanine carboxypeptidase [Bordetella avium 197N]
gi|115421997|emb|CAJ48519.1| probable D-alanyl-D-alanine carboxypeptidase [Bordetella avium
197N]
Length = 409
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 6/237 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ + D T V+ + AS++KLMTA VV + +L ++
Sbjct: 165 LRSSTAYVQDLTTSTVLFAKNENVVRPIASISKLMTALVVVDANQPMNEILEVTD---ED 221
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
+ S + G+ ++ + L L ++ S N A A+ + + FV MN +++L
Sbjct: 222 IDTLKHTTSRLRVGTRLSRGDMLHLALMSSENRAAHALGRNYPGGLEAFVAAMNAKARSL 281
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNT 203
G+ T F+ G+ + +L + +EI + NT
Sbjct: 282 GMINTRFVEPTGLSSENVSSPHDLARLLRAASQRPLIHRYSTDTEYDVEINKRTQTFRNT 341
Query: 204 NWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N V KTGF +G +V A + + V+L + + +R + +
Sbjct: 342 NLLVRKPDWDIKVSKTGFINEAGECLVMLARINGRDMAIVLLDSQGKLSRIGDAMRI 398
>gi|116629129|ref|YP_814301.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus gasseri ATCC
33323]
gi|282851112|ref|ZP_06260486.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
224-1]
gi|116094711|gb|ABJ59863.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus gasseri ATCC
33323]
gi|282558064|gb|EFB63652.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
224-1]
Length = 308
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 63/299 (21%), Positives = 119/299 (39%), Gaps = 35/299 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
+ FL II + +++ F + + +D G+VI
Sbjct: 10 KNFLWIIGIVVIAVCFLLWKNNFGPNSMPSNYHANQVDLNVKSAVAIDAKNGNVIYAKNA 69
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
+ AS+TKL+T Y+ +KEKK T ++ ++ ++ G T
Sbjct: 70 NQSLPIASMTKLLTTYLTLKAIKEKKIFWDTTVSPTQEIINLGSNPDYASVPLNLGQKYT 129
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH-- 161
+ ++KSAN+ A +A ++ E F+ M + L F+ G+ +
Sbjct: 130 VKELYDAALIKSANNAARMLAIAVSGNETNFLNQMRQQANKWKLHNVKFVTVDGLPEKKK 189
Query: 162 ---------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA------ 206
+ +A DMAI++ ++ TD+P+ ++ ++ + N+N
Sbjct: 190 NFLGMTTTIENKMSANDMAIIARKLVTDYPEVLNTTKVAKTYFRNTLMTNSNKMLNGLSD 249
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
DG+KTG T +G + + ++ +I VILGA + N R + LL+ F
Sbjct: 250 YDPNYPVDGLKTGTTDGAGSCFTCTVDKNNKRVITVILGAQNDNERFSETKKLLNYSFN 308
>gi|223985877|ref|ZP_03635915.1| hypothetical protein HOLDEFILI_03221 [Holdemania filiformis DSM
12042]
gi|223962143|gb|EEF66617.1| hypothetical protein HOLDEFILI_03221 [Holdemania filiformis DSM
12042]
Length = 335
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 73/329 (22%), Positives = 128/329 (38%), Gaps = 33/329 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ V L + Y ++ N G+V+ + AS++K+M
Sbjct: 1 MKKIAVFFLTLTLFW-------TPLHADGSYIVISGNDGNVLEAENEHEVRSIASISKIM 53
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA V I + S +KG +++ + L +++KS ND A
Sbjct: 54 TAVVALENGDYI-----DQWIIGDEVTNVTGSMIWIQKGQQVSMRSLLYGMMLKSGNDAA 108
Query: 121 VAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRI 177
VAIA + + +KF+Q MN + LG+ T F N +G+ + G+Y+TA DMA+L
Sbjct: 109 VAIAHRVGGGSVEKFIQMMNEKAVALGMKDTEFHNPNGMDVEEEGNYSTAYDMAVLMQY- 167
Query: 178 KTDFPQYMHYFQIKGLEIKG-KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
PQ+ + + ++ N+N + F G KTGFT +G +V +A G+
Sbjct: 168 AMTLPQFREIVATQYYTSEWGSRWKNSNKLLSNFEFCTGGKTGFTNKAGETLVTAAQNGE 227
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPNI 292
I V L DR F+ + RK + ++ + +
Sbjct: 228 LEYIVVTLAVPDR------------WTFHEQKYRKAMEMCELITLQPAGPIEQEGYIAQL 275
Query: 293 SEEVCTTQKEIINYNTQMKEAKDKESHFI 321
+ K+ Q +K + +
Sbjct: 276 DKPFEVVVKKEEAGQGQYTMTLNKSKNEL 304
>gi|187921395|ref|YP_001890427.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
phytofirmans PsJN]
gi|187719833|gb|ACD21056.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
phytofirmans PsJN]
Length = 410
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 10/243 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ ++D T V+AE D AS++KLMTA V A L + ++
Sbjct: 166 LRARSVYVVDERTQTVLAEKQADRVMPIASVSKLMTAVVALDAKHALNAPLNVTV---QD 222
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
+ S GST++ + L + ++ S N A A++ FV MN ++ L
Sbjct: 223 QDFDKFTGSRLSVGSTLSRHDMLHIALMSSENRAAAALSRDYTGGRPGFVAAMNAKARLL 282
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKY 200
G+ T F+N G+ + +TARD+++L + + + + G Y
Sbjct: 283 GMRHTSFVNGTGL-SAQNVSTARDLSLLVAAASRYPLIRAYSTDRDQVVLPGGGRASLSY 341
Query: 201 PNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N+N G KTGF +G +V + + V+LGA + A +
Sbjct: 342 HNSNALVRGGDRSIVLQKTGFINEAGHCVVVRMKVHGRPVDIVVLGAPGAHDHIADVARI 401
Query: 260 LSM 262
Sbjct: 402 SRW 404
>gi|222159812|gb|ACM47285.1| D,D-carboxypeptidase VanYD [Enterococcus faecium]
Length = 363
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/260 (20%), Positives = 103/260 (39%), Gaps = 29/260 (11%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+++ +T V+ + PAS K++TA V + + +
Sbjct: 105 NIIAANAIVVNKDTDAVLYQKNGTDRIAPASTAKMITALTVLEYC-----SPEEEMRVGA 159
Query: 85 NASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK--------- 133
+S KG T+T+ L L++ S ND A +A + KT
Sbjct: 160 EIEMIHSDSSTAWLMKGDTLTVRQLLIALMLPSGNDAAYTLAVNTGKTIAGDNSLSNQQA 219
Query: 134 ---FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM----H 186
F+ +N ++ LG++ ++F+ G G YTTA D+AI++ + +
Sbjct: 220 IKIFMDKVNEKARELGVTDSNFVVPDGYDAEGQYTTAYDLAIIAKACLENPIISEIVASN 279
Query: 187 YFQIKGLEIKGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
K + Y N+N + G+KTG + G +V++A+ ++ I
Sbjct: 280 TSYEKWPNGREVTYNNSNELLDPNSPYYRPEVIGLKTGTSSLGGACVVSAAVIDGETYIC 339
Query: 242 VILGALDRNTRNKVSASLLS 261
V +G+ + +R + S +L
Sbjct: 340 VAMGS-TKESRFQDSVDILD 358
>gi|194467015|ref|ZP_03073002.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
100-23]
gi|194454051|gb|EDX42948.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
100-23]
Length = 417
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/374 (15%), Positives = 122/374 (32%), Gaps = 42/374 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFLS------IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+ LV+ +++ N + A +D +G V+ + + AS
Sbjct: 13 KLLLVMAVISICLNGLGMFAKVHADNAAFQMDARAAYAIDAESGQVLYQKNATKRYPIAS 72
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLL 111
+ K++T V+ ++ I I+ ++ T+ + +
Sbjct: 73 VIKILTLGVILQDIRNHHLKWDQKIKITPAVAKMADDWHFSNVPLVNGEEYTVRQLVDSM 132
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV------------ 159
++ SA+ A+A + + F + M +K G++ N G+
Sbjct: 133 MLVSADGSTEALALADAGSTAAFNKKMMAFAKKAGVTDIKIYNMIGLPNGDLGEHKLKGV 192
Query: 160 --QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNTNW------A 206
+ +A+D+A++S + +P+ + + K K N N
Sbjct: 193 DKDAENLLSAKDVALISKYLVEQYPETLDITKQKFANFDVTKDQQYLMTNVNALLPQNGF 252
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA-----SLLS 261
DG+KTG T +G IV++ + +I V L L+
Sbjct: 253 APKNGEIDGLKTGNTDRAGKCIVSTGTFAGRRIILVALHTKGEWNDQSKMQQDFYNKLVD 312
Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
Y + KK++ + + N + T+K + MK K + +
Sbjct: 313 E--YQPVEIKKVSDLSAKLTSVKVKNGKNKNKANIKLTKKTTVWLPKNMKLQATKPTLRV 370
Query: 322 DFEKITLLKNKITK 335
+ L + K
Sbjct: 371 QGDDQKQLTAPVKK 384
>gi|167569264|ref|ZP_02362138.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
oklahomensis C6786]
Length = 379
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/255 (20%), Positives = 96/255 (37%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 123 LLASCGYTGAARSLLRSRAIYVVDERTGTVLIEKNANRVVPIASVTKLMTSMVALDTRAP 182
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L+ P+ +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 183 ----LSRPLRVSAQDRDYEKLTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYAGG 238
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ T +++ + +
Sbjct: 239 RPAFVAAMNRKARTLGMKHTHFVNATGLSPRNVSTAHDLSRLVAAASRYPRIKTFSTDTS 298
Query: 191 KGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
K + + N KTGF +G +V + + V+LGA
Sbjct: 299 KTVFPGRGQLRYVNSDALVRAGDSNIMLQKTGFINEAGHCVVFRYAVRGRPVDIVLLGAP 358
Query: 248 DRNTRNKVSASLLSM 262
+ + +
Sbjct: 359 GSSDHIADAMKIRRW 373
>gi|290890204|ref|ZP_06553285.1| hypothetical protein AWRIB429_0675 [Oenococcus oeni AWRIB429]
gi|290480150|gb|EFD88793.1| hypothetical protein AWRIB429_0675 [Oenococcus oeni AWRIB429]
Length = 423
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 129/366 (35%), Gaps = 41/366 (11%)
Query: 2 RQFLVIIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+QF++ + I + K ++D TG ++A D + AS+
Sbjct: 7 KQFILSLFAFFTVFSINVLKVKAAIITPSIKAKGAIVIDEKTGQILASKNADKRYPIASI 66
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNALKLLI 112
+KL+ AY+V +KE K L T + I + E +N + T+ L+ +
Sbjct: 67 SKLLIAYLVEKRIKENKISLNTKVKIPSGIVAISQETTITNVPLSATRSYTIKELLEDAL 126
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------- 158
+ S N A+A+ ++ + K M + + + G+
Sbjct: 127 LPSGNGAAIALGAAITGSVSKTETAMEKLLSSWNIKGVKIYSPAGLTNGEMGAYKDKLAS 186
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTN---WAVGTF 210
+ +A+++A +S + DFP + NTN + +
Sbjct: 187 DDAENKLSAKELAEVSRHLMLDFPSIRKITDKSSAVVSSTSGSSYTIENTNQLLKNIKSP 246
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD---RNTRNKVSASLLSMGFYNK 267
G+KTG + G N + Q +I V+LG+ +TR + S+LS
Sbjct: 247 YKFTGIKTGSAESIGGNFIGETRIKGQKVITVVLGSGSMTDESTRFVQTVSMLSQ-LNKA 305
Query: 268 TDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
+ KKI +I + + + + +K+ + +K K+
Sbjct: 306 SSIKKIAKSEGSAKLIAATGKNGKVKTINSYRYSLFVPKKKTSLVYSSIKVKKNISYPLS 365
Query: 322 DFEKIT 327
+ I
Sbjct: 366 KGKMIG 371
>gi|266623051|ref|ZP_06115986.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
gi|288865192|gb|EFC97490.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
Length = 309
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 65/255 (25%), Positives = 103/255 (40%), Gaps = 22/255 (8%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ S + + D + VI P PAS+TK MTA + +
Sbjct: 57 LCVVTADTPSSDQAVTAEAAAVFDLSDKTVIFGKNPFEKLYPASITKTMTALLAIKY--- 113
Query: 72 KKAMLTTPITISKNASEYP--PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L+ +T+ + A + K G +T++ L L++ S ND AIA +
Sbjct: 114 --GNLSDEVTVPEEAVITESGATLCGIKPGDKLTMEQLLYGLMLPSGNDAGAAIAVHMDG 171
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK----------- 178
+ +KF MN ++ LG + THF+N HG+ HYTTA D+ ++
Sbjct: 172 SIEKFADRMNEEARKLGATGTHFVNPHGLNDENHYTTAYDLYLIFNEAMKYPDFRKVIGT 231
Query: 179 --TDFPQYMHYFQIKGLEIKGKKYPNT-NWAVGTFLGADGMKTGFTCASGFNI-VASAIQ 234
D + + K + T + L A G KTG T A+G + +AS+
Sbjct: 232 SSYDAVYALASGETTTKTWKQSNWYMTGERNMPEGLTALGGKTGTTRAAGSCLIMASSGS 291
Query: 235 GDQSLIAVILGALDR 249
I+V+L A DR
Sbjct: 292 SGMEYISVVLKAPDR 306
>gi|224541857|ref|ZP_03682396.1| hypothetical protein CATMIT_01029 [Catenibacterium mitsuokai DSM
15897]
gi|224525207|gb|EEF94312.1| hypothetical protein CATMIT_01029 [Catenibacterium mitsuokai DSM
15897]
Length = 294
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/286 (16%), Positives = 91/286 (31%), Gaps = 27/286 (9%)
Query: 2 RQFLVIIAMAMLSNIFPF------------LSIAETNKLP--YYTLLDTNTGHVIAENYP 47
R+++ ++ L + T ++D +TG V
Sbjct: 4 RKWICMLCAIFLLSACATKEPVKEEKKKVVSIPQPTLNTEDVSAVVMDADTGKVYYAKNE 63
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
PAS KL++A V + K+ T I + G + +
Sbjct: 64 QESRYPASTIKLLSALVAIDYYKDN--DALTTRNIMSLPDRVFIHTAPVYDGERIPFKDV 121
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+ +++KS+N++A+ +AE+ F++ MN +K +G + N HG+
Sbjct: 122 IHGMLLKSSNEMALTLAENYKGGYDGFIEAMNKRAKKIGCTKVDVSNPHGLSYADKGWLK 181
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV-----------GTFLGADGM 216
+ + + N N + G
Sbjct: 182 ETCSTKDMALIAKEFYKNKKLRKIISTESYIFESNPNREMKNVRMTQKDSTYYDKRVIGG 241
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
KTGFT +G +V + +++I V+ R + LL
Sbjct: 242 KTGFTNLAGRCLVTYSKVKKKTIITVVFKENTRGETYTDTKKLLDY 287
>gi|319442898|ref|ZP_07992054.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium variabile DSM
44702]
Length = 425
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 91/242 (37%), Gaps = 12/242 (4%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y L D ++G+V+A P + PAS+ K++ V + + +++ +
Sbjct: 114 SYVLYDVDSGNVLAAKDPYGLYRPASIIKILLVMVALDE-----LDMDQKVKVTEEMATV 168
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
S G T + L+ L++ S ND A+A V+ M + + +LG+ A
Sbjct: 169 DGSKVGVGPGGKYTAEQLLQGLVMNSGNDAALA-LAGALGGTDATVEKMQSLADSLGVQA 227
Query: 150 THFMNAHGVVQHGHYTTAR-----DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
T +G+ TTA A + D + + + N
Sbjct: 228 TKVTTVNGLDTPEVQTTAYDLALVYRAAFQRQELRDLLGTEQATFPGYRDNPEFQISSDN 287
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVSASLLSMG 263
+ + G G KTGFT + A+ + ++L V+L + R + + ++
Sbjct: 288 GLLYDYPGTIGGKTGFTDNARHTYAAAVSRKGRTLGVVMLNSTVAAGRPWQQAETVFDAA 347
Query: 264 FY 265
F
Sbjct: 348 FD 349
>gi|224477927|ref|YP_002635533.1| penicillin binding protein 4 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222422534|emb|CAL29348.1| penicillin binding protein 4 [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 409
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 79/378 (20%), Positives = 152/378 (40%), Gaps = 52/378 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------------------NKLPYYTLLDTNTGHVI 42
M + L I+ +L ++ T G ++
Sbjct: 1 MNKVLSIVFSFLLLWTLFITPNTYAQQTPTEIAKQHHQPLNTQYNPKSAYVI-TQQGQIL 59
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE----YPPSNSTFKK 98
+ + + +PAS TKLMT Y+V +++ K + + I+ + + + K
Sbjct: 60 YDYHGNQSIDPASTTKLMTVYLVLEAIEQGKIKPSDSVKITPSYEKLAQLPNLTTFPLKN 119
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
T T+D LK +++S+N + +A+ L KF +MN +K LG+ +HF N G
Sbjct: 120 KQTYTIDQLLKQAMLESSNAATLVLADKLSGDTSKFTDNMNAKAKELGMKHSHFTNPSGA 179
Query: 159 VQ--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
++TA+DM ILS I ++P+ + Y +K + GKK NTN
Sbjct: 180 NNLLIQQFAPKAYKSETFSHSTAQDMTILSKAIIKNYPKVLQYSSLKTDQQYGKKLTNTN 239
Query: 205 W----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL------DRNTRNK 254
+ GA G+KTG T +G+N+V + + + + ++ ++ R K
Sbjct: 240 LSLPGSQDALNGAQGLKTG-TSDNGYNLVLTTKRNNLRIDTTVMNVQPYPSETSKHARQK 298
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAK 314
++ +L + + RK I+ + + ++ + V K+ Y ++K K
Sbjct: 299 IANALTEDAYKHYEYRKVISKGEHEL-DGKTYDVKQDLYDVVP---KDKNKYKLKIKNDK 354
Query: 315 DKESHFIDFEKITLLKNK 332
+ + F K + +
Sbjct: 355 LQIDYPRQFLKGSHAPSV 372
>gi|227544057|ref|ZP_03974106.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
CF48-3A]
gi|300908323|ref|ZP_07125788.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
SD2112]
gi|68160782|gb|AAY86837.1| lr0959 [Lactobacillus reuteri]
gi|227185963|gb|EEI66034.1| serine family D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
CF48-3A]
gi|300894570|gb|EFK87927.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri
SD2112]
Length = 414
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/371 (14%), Positives = 113/371 (30%), Gaps = 50/371 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENY 46
M++ A +L + + A +D +G V+ +
Sbjct: 1 MKKVKSFFAKLLLITAIISICLNGLGMFEKVHADTAAFQMDARAAYAIDAESGQVLYQKN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ AS+ K++T V+ ++ I I+ ++ +
Sbjct: 61 ATKRYPIASVIKILTLGVILQDIRNHHLKWDQKIKITPAVAKMADDWHFSNVPLMNGEEY 120
Query: 107 ALKLLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--- 159
++ L+ A E + + F + M +K G++ N G+
Sbjct: 121 TVRQLVDSMMLVSADGSTEALALADAGSTAAFNKKMMAFAKKAGVTDIKIYNMIGLPNGD 180
Query: 160 -----------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-----YPNT 203
+ +A+D+A++S + ++P+ + + K K N
Sbjct: 181 LGKHKLKGVDKDAENLLSAKDVALISKYLVENYPETLDITKQKFANFDVTKDQQYLMTNV 240
Query: 204 NW------AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
N DG+KTG T +G IV++ + +I V L
Sbjct: 241 NALLPQNGFAPKDGEIDGLKTGNTDRAGKCIVSTGTFTGRRIILVALHTKGEWNDQSKMQ 300
Query: 258 -----SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
L+ Y + KK++ + + N + T+K + MK
Sbjct: 301 QDFYNKLVDE--YQPVEIKKVSDLSAKLTSVKVKNGKNKNKANIKLTKKTTVWLPKNMKL 358
Query: 313 AKDKESHFIDF 323
K + +
Sbjct: 359 QATKPTLRVQG 369
>gi|330875216|gb|EGH09365.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 281
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 10/243 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-K 84
++D T V+ + PD AS+TKLMTA +V + + I ++
Sbjct: 10 LASGSAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAMIVLDAKQ----SMDEVIPVNIS 65
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
E S K GS M + L + ++ S N A ++A S F+ MN +K
Sbjct: 66 QTPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKA 125
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY---- 200
LG+ T ++ G+ + T ++ K + + K + + Y
Sbjct: 126 LGMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKYPLLSELSTTEQKTVTFRKPTYILGF 185
Query: 201 -PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
+ KTGFT +G +V ++ + VIL A + T ++ +
Sbjct: 186 SNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASRI 245
Query: 260 LSM 262
Sbjct: 246 RKW 248
>gi|269122254|ref|YP_003310431.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella
termitidis ATCC 33386]
gi|268616132|gb|ACZ10500.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sebaldella
termitidis ATCC 33386]
Length = 496
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 63/295 (21%), Positives = 110/295 (37%), Gaps = 15/295 (5%)
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
ASL K+M V + + L + + + S K G L + L+
Sbjct: 173 PTASLAKVMNILVALDQVDKGNKSLDDKVCFDQATANVGGSWLNVKAGECFVLRDLLRAE 232
Query: 112 IVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ----HGHYTT 166
+ SAN+ A +A+ + + KFV+ MN +K LG+ T F G+ T+
Sbjct: 233 NIYSANNAAYLVAKHIGNGSIDKFVELMNEKAKELGMKNTKFYTPAGLPTSMTGRQLDTS 292
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLE-----IKGKKYPNTNWAVGTFLGADGMKTGFT 221
D L + + K L + YP+ N + F G G+KTGF
Sbjct: 293 TADDLYLLAMAAMKDKRIREWAGEKELILENSLGEQIIYPSRNHLLEKF-GIWGLKTGFH 351
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFY 281
SG+NI+ ++ +G+ ++AV+LG + R LL+ F + I
Sbjct: 352 NLSGYNIIVTSKKGNVEIVAVVLGEVTDAART----KLLTEEFQAIEAQLTIVKKAGSDM 407
Query: 282 QQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + + + + N + + +K T++ I KK
Sbjct: 408 GEFKLKDGKKKTIKGTLAEDVYEVKNNPYEYETRDLNIKAPVQKGTVIGELIIKK 462
>gi|46204603|ref|ZP_00049748.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
magnetotacticum MS-1]
Length = 391
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 69/277 (24%), Positives = 126/277 (45%), Gaps = 6/277 (2%)
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS---TFKKGSTMTLDNALKLLIVKSA 116
MT Y++F L++ + L +P+TIS NA+ + + L A+K V
Sbjct: 1 MTLYMLFEQLEKGRYELDSPLTISANAAAPGARRRLGLAHPASTILGLRTAIKCRSVTQV 60
Query: 117 NDIAVAIA---ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
++ + E++ +E +F + M +K LG+S TH+ NA G+ TTA D+ IL
Sbjct: 61 WPTSIRLPPSRENIAGSEPRFAEMMTRKAKALGMSRTHYANASGLPDPDQITTAHDLTIL 120
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ I+ FP+Y YFQ + +G+ N N +G G DG+KTG+T SGFN++ +A
Sbjct: 121 ARAIQDRFPRYYRYFQTRSFAFRGRVIGNHNHLLGNVEGVDGIKTGYTRDSGFNLMTAAK 180
Query: 234 QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
GD+ ++A++LG +R+++ A L+ + + + ++ +
Sbjct: 181 LGDRQIVAIVLGGKSGASRDRIMADLVRANLPRAYAGARQTAPVVEVAERGRPAVIAEAG 240
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
T + + ++ +D T
Sbjct: 241 SRTRTEVASADDDDDAVQTTSSTSPAPLDIRPATTTP 277
>gi|255505331|ref|ZP_05345475.3| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
DSM 14469]
gi|255268368|gb|EET61573.1| serine-type D-Ala-D-Ala carboxypeptidase [Bryantella formatexigens
DSM 14469]
Length = 326
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/251 (23%), Positives = 96/251 (38%), Gaps = 22/251 (8%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
++D + +V+ PASLTK+MTA V + L IT+ + A
Sbjct: 76 AEAGAMMDLSEENVLYAKNVHERLYPASLTKIMTALVALKY-----GNLDDVITVDEVAL 130
Query: 88 EYPPSN--STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
+ P + + G TL + L++ S ND AIA + + + FV MN + ++
Sbjct: 131 DIDPESSVCYLELGDQYTLRQLIYGLLIASGNDAGNAIAYHVGGSIENFVAMMNQEAASI 190
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY---MHYFQIKGLEIKGKKYPN 202
G + THFMNAHG+ HYTT D+ ++ +
Sbjct: 191 GATNTHFMNAHGLQDENHYTTPYDIYLMFQEALKYDVFQDAISKQNFTVTYTAGDGEQYE 250
Query: 203 TNWAVGTFLG-----------ADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRN 250
W ++ G KTG T +G + + S +VI+ + ++
Sbjct: 251 RTWYATSYYFTGEAAAPDGVTVFGGKTGTTDEAGSCLALLSKDAYGNSYFSVIMKSDNKA 310
Query: 251 TRNKVSASLLS 261
+ LLS
Sbjct: 311 DLYEEMNELLS 321
>gi|255323933|ref|ZP_05365059.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
tuberculostearicum SK141]
gi|255299113|gb|EET78404.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
tuberculostearicum SK141]
Length = 397
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/248 (20%), Positives = 100/248 (40%), Gaps = 13/248 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + D ++G +IA P+ + PAS+ K + A VV L + + +
Sbjct: 89 DVVAAAWMVSDIDSGEIIAMKDPNGRYRPASIIKALLALVVIDE-----LDLHQKVEVGE 143
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+++ S G T T++ L+ L++ S ND A A+A+ L ++ ++ +N +
Sbjct: 144 ESAQIDGSAVGIGPGGTYTVEQLLQGLLMASGNDAAHALAQEL-GGDEATLRKVNEKAAE 202
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-----GLEIKGKK 199
+G ++T+ + G+ G T+A D++ + + ++ G +
Sbjct: 203 IGTNSTYAASYSGLDAPGMSTSAEDISRIYRAAFHNPTFARIVDTESVDFPGWGDLDGYQ 262
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSA 257
N N G KTGFT + V + + + L AV+L + +
Sbjct: 263 LGNDNGLFLNDPDGIGGKTGFTDDAHHTFVGALDRHGRRLQAVLLDTTVEHGPRAWEQAQ 322
Query: 258 SLLSMGFY 265
LL +
Sbjct: 323 KLLHEAYK 330
>gi|116490774|ref|YP_810318.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
gi|116091499|gb|ABJ56653.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
Length = 423
Score = 108 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 129/366 (35%), Gaps = 41/366 (11%)
Query: 2 RQFLVIIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+QF++ + I + K ++D TG ++A D + AS+
Sbjct: 7 KQFILSLFAFFTVFSINVLKVKAAIITPSIKAKGAIVIDEKTGQILASKNADKRYPIASI 66
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNALKLLI 112
+KL+ AY+V +KE K L T + I + E +N + T+ L+ +
Sbjct: 67 SKLLIAYLVEKRIKENKISLNTKVKIPSGIVAISQETTITNVPLSATRSYTIKELLEDAL 126
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------- 158
+ S N A+A+ ++ + K M + + + G+
Sbjct: 127 LPSGNGAAIALGAAITGSVSKTETAMEKLLSSWNIKGVKIYSPAGLTNGEMGAYKDKSAS 186
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTN---WAVGTF 210
+ +A+++A +S + DFP + NTN + +
Sbjct: 187 DDAENKLSAKELAEVSRHLMLDFPSIRKITDKSSAVVSSTSGSSYTIENTNQLLKNIKSP 246
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD---RNTRNKVSASLLSMGFYNK 267
G+KTG + G N + Q +I V+LG+ +TR + S+LS
Sbjct: 247 YKFTGIKTGSAESIGGNFIGETRIKGQKVITVVLGSGSMTDESTRFVQTVSMLSQ-LNKA 305
Query: 268 TDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
+ KKI +I + + + + +K+ + +K K+
Sbjct: 306 SSIKKIAKSEGSAKLIAATGKNGKVKTINSYRYSLFVPKKKTSLVYSSIKVKKNISYPLS 365
Query: 322 DFEKIT 327
+ I
Sbjct: 366 KGKMIG 371
>gi|323486924|ref|ZP_08092240.1| hypothetical protein HMPREF9474_03991 [Clostridium symbiosum
WAL-14163]
gi|323691972|ref|ZP_08106221.1| hypothetical protein HMPREF9475_01084 [Clostridium symbiosum
WAL-14673]
gi|323399787|gb|EGA92169.1| hypothetical protein HMPREF9474_03991 [Clostridium symbiosum
WAL-14163]
gi|323503981|gb|EGB19794.1| hypothetical protein HMPREF9475_01084 [Clostridium symbiosum
WAL-14673]
Length = 321
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/253 (23%), Positives = 98/253 (38%), Gaps = 24/253 (9%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
L + V+ PAS TK+MTA + L+ +T++++A
Sbjct: 71 NAEAGALFNVTDRSVVYSKNAFERLYPASTTKVMTAIIALEE-----GNLSDQVTVTEDA 125
Query: 87 SEYPPSN--STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
K G +T+ + L L++ S ND A AIA + + F MN ++
Sbjct: 126 VITEAGASLCGIKPGDVITMQDLLYGLMMPSGNDAANAIAVHMYGSIDAFADRMNVRARE 185
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK------ 198
LG + THFMN G+ HYTTA D+ ++ P + +
Sbjct: 186 LGATGTHFMNPSGLTDENHYTTAYDLYLMF-NEAMKLPLFREIIAEDSYTANYQNGAGEA 244
Query: 199 ---------KYPNTNWAVGTFLGADGMKTGFTCASGFNI-VASAIQGDQSLIAVILGALD 248
Y + G KTG T A+G+ + +AS D+ I+V+L +
Sbjct: 245 VSKTWTVGNWYQKGERETPAGVSVLGGKTGTTQAAGYCLIMASNDSQDKEYISVVLKSDS 304
Query: 249 RNTRNKVSASLLS 261
R + +++S
Sbjct: 305 RPSLYDNMTNIIS 317
>gi|254390349|ref|ZP_05005566.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
gi|294813829|ref|ZP_06772472.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
gi|197704053|gb|EDY49865.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
gi|294326428|gb|EFG08071.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
Length = 315
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 60/276 (21%), Positives = 106/276 (38%), Gaps = 19/276 (6%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L++ A + + A L+D TG + AS TK+ TA
Sbjct: 23 LLLTASPLTAPAHAATRPAPKISGAAGYLMDLKTGKSVFSKSDSTRRQMASTTKVATAIT 82
Query: 65 VFSFLKEK-KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
V + LT + + S + K G +T+ L L++ S D A A+
Sbjct: 83 VLTTKGLDLNRKLTVKQSYRDYVAREKGSTADLKTGDKLTVRQLLHALMLPSGCDAAYAL 142
Query: 124 AESLCKTEKKFVQ------HMNNTSKNLGLSATHFMNAHGV-VQHGHYTTARDMAILSWR 176
A++ K + MN + +L L T F + G+ +YTT D+ L+
Sbjct: 143 ADAFGKGTTTAARTKSFIGMMNKKAADLKLKNTKFDSFDGISPGGQNYTTPSDLTKLAKH 202
Query: 177 IKTDFPQYMHYFQIKGL--------EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
++ + + + NTN +G++ G G+KTG +G +
Sbjct: 203 AFSNQLFRDVVKTRTYHATATAANGKKRYYTWTNTNTLLGSYQGMVGIKTGSGSKAGKCL 262
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
V +A +G ++ I V+L D R + + +L+ F
Sbjct: 263 VFAATRGSKTYIGVVLNGPD---RFRDAEKMLNHAF 295
>gi|118587105|ref|ZP_01544535.1| serine-type D-Ala-D-Ala carboxypeptidase [Oenococcus oeni ATCC
BAA-1163]
gi|118432515|gb|EAV39251.1| serine-type D-Ala-D-Ala carboxypeptidase [Oenococcus oeni ATCC
BAA-1163]
Length = 423
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 66/366 (18%), Positives = 129/366 (35%), Gaps = 41/366 (11%)
Query: 2 RQFLVIIAMAMLSNIFP-----FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+QF++ + I + K ++D TG ++A D + AS+
Sbjct: 7 KQFILSLFAFFTVFSINVLKVKAEIITPSIKAKGAIVIDEKTGQILASKNADKRYPIASI 66
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNALKLLI 112
+KL+ AY+V +KE K L T + I + E +N + T+ L+ +
Sbjct: 67 SKLLIAYLVEKRIKENKISLNTKVKIPSGIVAISQETTITNVPLSATRSYTIKELLEDAL 126
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------- 158
+ S N A+A+ ++ + K M + + + G+
Sbjct: 127 LPSGNGAAIALGAAITGSVSKTETAMEKLLSSWNIKGVKIYSPAGLTNGEMGAYKDKSAS 186
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTN---WAVGTF 210
+ +A+++A +S + DFP + NTN + +
Sbjct: 187 DDAENKLSAKELAEVSRHLMLDFPSIRKITDKSSAVVSSTSGSSYTIENTNQLLKNIKSP 246
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD---RNTRNKVSASLLSMGFYNK 267
G+KTG + G N + Q +I V+LG+ +TR + S+LS
Sbjct: 247 YKFTGIKTGSAESIGGNFIGETRIKGQKVITVVLGSGSMTDESTRFVQTVSMLSQ-LNKA 305
Query: 268 TDRKKI------NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
+ KKI +I + + + + +K+ + +K K+
Sbjct: 306 SSIKKIAKSEGSAKLIAATGKNGKVKTINSYRYSLFVPKKKTNLVYSSIKVKKNISYPLS 365
Query: 322 DFEKIT 327
+ I
Sbjct: 366 KGKMIG 371
>gi|7766853|pdb|1ES4|A Chain A, C98n Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 60/262 (22%), Positives = 105/262 (40%), Gaps = 24/262 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI- 82
T ++ TG + D + S TK+MTA VV + L +TI
Sbjct: 4 PTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQS---NLNLDAKVTIQ 60
Query: 83 ---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ--- 136
S S + G +T+ L L++ S ND A A+A+ + +
Sbjct: 61 KAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGNDAAYALADKYGSGSTRAARVKS 120
Query: 137 ---HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN + NLGL THF + G+ +Y+T RD+ ++ + + K
Sbjct: 121 FIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIAS-SAMKNSTFRTVVKTKAY 179
Query: 194 EIK----------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K + NTN + ++ GA G+KTG + + +V +A +G +++I +
Sbjct: 180 TAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTV 239
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
L + R + +++ GF
Sbjct: 240 LASTSIPARESDATKIMNYGFA 261
>gi|78189048|ref|YP_379386.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium chlorochromatii
CaD3]
gi|78171247|gb|ABB28343.1| D-alanyl-D-alanine carboxypeptidase [Chlorobium chlorochromatii
CaD3]
Length = 473
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 61/245 (24%), Positives = 110/245 (44%), Gaps = 15/245 (6%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
Y L + T ++ P PASLTK++T+ + + L + I++ ++
Sbjct: 64 SAYMLKEYGTPSMLMGKNISTPLPPASLTKVLTSIMAIESGR-----LLQDVVITRESTL 118
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
PS + F G + L + +K +V S+ND A AI L + FV MN ++ +G+
Sbjct: 119 VEPSKAGFTVGERIKLIDLVKAAMVSSSNDAAFAIGIYLSGSVDAFVDAMNYKARQIGMR 178
Query: 149 ATHFMNAHGVV---QHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-----GLEIKGKKY 200
+HF N G G+ +TA D+ L+ + + K
Sbjct: 179 NSHFTNPAGYDRGQYAGNVSTAEDLMRLTEYAVRNSTFNQIARMDRAVFVEQSTRKVYNL 238
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N + + + G+KTG+T +G ++A A++GD+ L+ V+L A + +R +AS+
Sbjct: 239 RTHNKLLAHYPHSVGIKTGWTTRAGGCLIARAVKGDKDLLVVMLNA--KISRWDTAASMF 296
Query: 261 SMGFY 265
+ F
Sbjct: 297 DLAFN 301
>gi|218506880|ref|ZP_03504758.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Brasil
5]
Length = 247
Score = 108 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 75/245 (30%), Positives = 121/245 (49%), Gaps = 4/245 (1%)
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ F LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A A+
Sbjct: 1 LTFEALKRGKIDWDTPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAM 60
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
AE+L +E F M ++ LG+S T F+NA G+ TTARDM+ L + ++P
Sbjct: 61 AETLGGSESGFAWMMTAKARQLGMSRTVFVNASGLPNPSQVTTARDMSTLGVALMKNYPN 120
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
F + +GK N + + G DG+KTG+T ASGFN+V++ G++ ++ V+
Sbjct: 121 EYRLFSMASFNFRGKTVRGHNNLMYRYQGMDGIKTGYTNASGFNLVSAVRDGNRRVVGVV 180
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTD----RKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
LG +R+ A LL + R + K+ + + + ++ +
Sbjct: 181 LGGRTARSRDAKMAGLLDRYLGRASSSGGARLVASVGAKEPVEVASAADASDVPVPLNAP 240
Query: 300 QKEII 304
+
Sbjct: 241 RPAGD 245
>gi|326442247|ref|ZP_08216981.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
Length = 305
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 60/276 (21%), Positives = 106/276 (38%), Gaps = 19/276 (6%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L++ A + + A L+D TG + AS TK+ TA
Sbjct: 13 LLLTASPLTAPAHAATRPAPKISGAAGYLMDLKTGKSVFSKSDSTRRQMASTTKVATAIT 72
Query: 65 VFSFLKEK-KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
V + LT + + S + K G +T+ L L++ S D A A+
Sbjct: 73 VLTTKGLDLNRKLTVKQSYRDYVAREKGSTADLKTGDKLTVRQLLHALMLPSGCDAAYAL 132
Query: 124 AESLCKTEKKFVQ------HMNNTSKNLGLSATHFMNAHGV-VQHGHYTTARDMAILSWR 176
A++ K + MN + +L L T F + G+ +YTT D+ L+
Sbjct: 133 ADAFGKGTTTAARTKSFIGMMNKKAADLKLKNTKFDSFDGISPGGQNYTTPSDLTKLAKH 192
Query: 177 IKTDFPQYMHYFQIKGL--------EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
++ + + + NTN +G++ G G+KTG +G +
Sbjct: 193 AFSNQLFRDVVKTRTYHATATAANGKKRYYTWTNTNTLLGSYQGMVGIKTGSGSKAGKCL 252
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
V +A +G ++ I V+L D R + + +L+ F
Sbjct: 253 VFAATRGSKTYIGVVLNGPD---RFRDAEKMLNHAF 285
>gi|167758172|ref|ZP_02430299.1| hypothetical protein CLOSCI_00510 [Clostridium scindens ATCC 35704]
gi|167664069|gb|EDS08199.1| hypothetical protein CLOSCI_00510 [Clostridium scindens ATCC 35704]
Length = 342
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 64/276 (23%), Positives = 110/276 (39%), Gaps = 24/276 (8%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L + + S F + L L D G V PAS TK+MTA V
Sbjct: 54 LFASDLCVASENVAFQGAPDPAGLHAAGLFDVEDGKVDFAYNLHDRLYPASTTKIMTALV 113
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIA 120
LT +T+ +A K G MTL + L L+++S ND A
Sbjct: 114 ALKK-----GNLTDMVTVQADADAANFAADEKTCGIKAGDQMTLGDLLHGLLMESGNDAA 168
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI--- 177
VAIA+ + ++F Q MN ++ L + THF+N++G+ HYTTA D+ ++
Sbjct: 169 VAIADYIGGNSEQFAQMMNEEAQALMATKTHFLNSNGLHNENHYTTAYDLYLIFNECIKH 228
Query: 178 -----KTDFPQYMHYFQIKGLEIKGKKYPNTNWAV------GTFLGADGMKTGFTCASGF 226
+ +Y ++ + TN+ G KTG T +G
Sbjct: 229 DEFVDIINTAEYTANITGADKTMRQVAWKQTNFYALGEAELPQSATIIGGKTGTTEPAGN 288
Query: 227 NIVAS-AIQGDQSLIAVILGALDRNTRNKVSASLLS 261
++ + I++++GA ++ + ++++
Sbjct: 289 CLILLEKDSSGRPYISIVMGADTKSLLYQDMTAIIN 324
>gi|302879653|ref|YP_003848217.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gallionella
capsiferriformans ES-2]
gi|302582442|gb|ADL56453.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Gallionella
capsiferriformans ES-2]
Length = 347
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 98/256 (38%), Gaps = 11/256 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
LS+ + + D T + PD AS+TKLMTA VV
Sbjct: 83 LSSAAFQPVSSPKLASSIALIYDEQTQRPLYTKNPDAVAPIASITKLMTAMVVLDAEP-- 140
Query: 73 KAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
L +++ + + ++S G+T LKL ++ S N A +A +
Sbjct: 141 --DLNEALSVGEADFDILKGTHSRLGVGTTFIRSEMLKLALMSSENRAASVLARNYPGGM 198
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHY 187
V MN ++ LG++ T F + G+ + +TARD+ +
Sbjct: 199 AAAVAAMNAKARKLGMTHTTFRDPTGL-NSENVSTARDLVKMVAAARNYKLIHQYTTTAT 257
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
++G + + NTN V G KTG+ +G +V A + +I V+L +
Sbjct: 258 HSVEGARGRELTFNNTNPLVKNASWEIGVSKTGYINEAGRCLVMQAQIRQRPVIIVLLDS 317
Query: 247 LDRNTRNKVSASLLSM 262
+ + TR + +
Sbjct: 318 VGKTTRIGDANRVKKW 333
>gi|259502438|ref|ZP_05745340.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
antri DSM 16041]
gi|259169581|gb|EEW54076.1| D-alanyl-D-alanine serine-type carboxypeptidase [Lactobacillus
antri DSM 16041]
Length = 412
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 58/328 (17%), Positives = 113/328 (34%), Gaps = 32/328 (9%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
K +D +G V+ + + AS+TK++T V+ ++ K IT S
Sbjct: 37 KARSAYAIDAESGQVLYQKNAQKTYPVASVTKILTLAVIEQDIRAHKLSWDQKITASPAV 96
Query: 87 SEY----PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
++ SN G T+ ++ +++ SA+ A+A + + F Q M +
Sbjct: 97 AQMANDPRCSNVQLNAGEKYTVKQLVESMMLVSADGSTEALALADAGSTAAFNQKMQAVA 156
Query: 143 KNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYF 188
G+ N G+ + +A+D+A+++ + ++P+ +
Sbjct: 157 HKAGVHDAKIYNMVGLPNSYMGAHALKGVDKDAENLFSAKDIALIAKYLVEEYPETLQIT 216
Query: 189 QIKGLEI-----KGKKYPNTNWAVGT------FLGADGMKTGFTCASGFNIVASAIQGDQ 237
K + + N N + DG+KTG T +G IV + +
Sbjct: 217 STKFADFKVSADHKEHMTNINSLLPQNGAAPKDWQIDGLKTGNTDEAGKCIVTTGTYAGR 276
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII---KDFYQQNLSNEVPNISE 294
+I V L N +N I K Q+++ + S
Sbjct: 277 RVIVVALHTDGDWNDQSKMQKEFYEALANGYQPVALNSIKAFPKKLQQRHVVHAKKQHST 336
Query: 295 EVCTTQKEIINYNTQMKEAKDKESHFID 322
+ T+K I A+ +D
Sbjct: 337 GLALTKKTAIWLPKNTSWAQTSPQLQLD 364
>gi|226324960|ref|ZP_03800478.1| hypothetical protein COPCOM_02752 [Coprococcus comes ATCC 27758]
gi|225206308|gb|EEG88662.1| hypothetical protein COPCOM_02752 [Coprococcus comes ATCC 27758]
Length = 292
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 68/272 (25%), Positives = 106/272 (38%), Gaps = 26/272 (9%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + N E N+L L D V+ PAS TK+MTA +
Sbjct: 20 LCVAQNDVALQGYTEDNELHSAALFDLTGERVLYSYKAHERLYPASTTKIMTALLAIENA 79
Query: 70 KEKKAMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
L +TIS N + KG TL + L L++ S ND A AIAE
Sbjct: 80 -----NLDDQVTISGNADASSFSADAQVCGLAKGEVWTLRDLLGALLLYSGNDAATAIAE 134
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD----- 180
+ +E+ FV MN ++ L + THFMN HG+ HYTTA D+ ++
Sbjct: 135 YVGGSEEAFVNMMNRRAQELMANGTHFMNPHGLHDDNHYTTAYDLYLIFNECIKHEDFVN 194
Query: 181 ---------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
+ + + L Y V + G KTG T +G+ ++
Sbjct: 195 IIQSEAYTAYYTDVDGNSQEVLFTPTNLYAQGEVDVPENVTIVGGKTGTTDEAGYCLI-L 253
Query: 232 AIQG--DQSLIAVILGALDRNTRNKVSASLLS 261
+ D I++++GA ++ + SL+
Sbjct: 254 MEKDSSDNPYISIVMGASEKPVLYEDMTSLIE 285
>gi|182417161|ref|ZP_02948532.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium butyricum
5521]
gi|237668489|ref|ZP_04528473.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182379003|gb|EDT76509.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium butyricum
5521]
gi|237656837|gb|EEP54393.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 427
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 64/287 (22%), Positives = 121/287 (42%), Gaps = 13/287 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
++ ++ +++++ S + + A +D TG +I D PAS
Sbjct: 7 LKTLILTLSISLFSPLASINAKAATTAQPDINAQAAITMDLETGEIIYCKDADSKRYPAS 66
Query: 56 L-TKLMTAYVVFSFLKEKKAMLTTPITISKNAS-EYPPSNSTFKKGSTMTLDNALKLLIV 113
L + + K + T I S +++ K G TM+ D+ +K L++
Sbjct: 67 TTKLLTGLLLAENKQKSDEIAFTESAKIQPEYSLNINFMHNSMKVGDTMSADDVMKGLLL 126
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S ND A IA+++ +KF MN +K +G + +HF+ A+G+ HYTTA D++++
Sbjct: 127 FSGNDTAYMIADNVAGNSQKFADMMNAKAKEIGANNSHFVTANGLHDENHYTTAYDLSLI 186
Query: 174 SWRIKTDFPQYMHYF-QIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVAS 231
+ + + ++I G K N +G G KTG T A+G + A
Sbjct: 187 TKAAFQNDWERETMELADASIQINGAKVLLENRNLGLGKNGNIAGKTGLTNAAGGCLAAV 246
Query: 232 AIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKIN 274
+ LI V+L + + T+ S+++ + K +
Sbjct: 247 YEVNGRKLIGVVLKSRQVDNADMTKFNDMDSIMNYSYNTSKTVYKSS 293
>gi|161138122|gb|ABX58032.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum brasilense]
Length = 276
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 8/211 (3%)
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
+L +E KF + M ++ G+ T F N++G+ TTAR +ILS + +D +Y
Sbjct: 2 ALGGSEAKFAEMMTRKAREXGMRNTVFXNSNGLPNMQQVTTARXFSILSRAMLSDHSRYY 61
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
YF + G+ N N + + G DG+KTG+T ASGFN+ ASA++ + L+AV+LG
Sbjct: 62 PYFSRRAFVYGGRSLNNHNRLMSRYEGMDGIKTGYTVASGFNLAASAVRDGRRLVAVVLG 121
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDR-------KKINYIIKDFYQQNLSNEVPNISEEVCT 298
+R+ ++L F + + + + P ++ +
Sbjct: 122 GKSAASRDARMEAILDKAFDKPSRGSEAPVVARAGDEDTPRAVAKGRPPAKPETIAQLAS 181
Query: 299 TQKEIINYNTQMKE-AKDKESHFIDFEKITL 328
T + +D ++ D K +
Sbjct: 182 TVSTPAAVRPPARARDEDADTTKADGSKWGV 212
>gi|7766852|pdb|1ES3|A Chain A, C98a Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/262 (22%), Positives = 104/262 (39%), Gaps = 24/262 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI- 82
T ++ TG + D + S TK+MTA VV + L +TI
Sbjct: 4 PTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQS---NLNLDAKVTIQ 60
Query: 83 ---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ--- 136
S S + G +T+ L L++ S D A A+A+ + +
Sbjct: 61 KAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGADAAYALADKYGSGSTRAARVKS 120
Query: 137 ---HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN + NLGL THF + G+ +Y+T RD+ ++ + + K
Sbjct: 121 FIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIAS-SAMKNSTFRTVVKTKAY 179
Query: 194 EIK----------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K + NTN + ++ GA G+KTG + + +V +A +G +++I +
Sbjct: 180 TAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTV 239
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
L + R + +++ GF
Sbjct: 240 LASTSIPARESDATKIMNYGFA 261
>gi|311739947|ref|ZP_07713781.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
pseudogenitalium ATCC 33035]
gi|311305020|gb|EFQ81089.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 401
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/248 (20%), Positives = 101/248 (40%), Gaps = 13/248 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + D ++G +IA P+ + PAS+ K + A VV L + + +
Sbjct: 89 DVVAAAWMVSDIDSGEIIAMKDPNGRYRPASIIKALLALVVIDE-----LDLHQKVEVGE 143
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+++ S G T T++ L+ L++ S ND A A+A+ L ++ ++ +N+ +
Sbjct: 144 ESAQIDGSAVGIGPGGTYTVEQLLQGLLMASGNDAAHALAQEL-GGDEATLRKVNDKAAE 202
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-----GLEIKGKK 199
+G ++T+ + G+ G T+A D++ + + ++ G +
Sbjct: 203 IGTNSTYAASYSGLDAPGMSTSAEDISRIYRAAFHNPTFARIVDTESVDFPGWGDLDGYQ 262
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKVSA 257
N N G KTGFT + V + + + L AV+L + +
Sbjct: 263 LGNDNGLFLNDPDGIGGKTGFTDDAHHTFVGALDRHGRRLQAVLLDTTVEHGPRAWEQAQ 322
Query: 258 SLLSMGFY 265
LL +
Sbjct: 323 KLLHEAYK 330
>gi|126456044|ref|YP_001074647.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106a]
gi|242313626|ref|ZP_04812643.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106b]
gi|126229812|gb|ABN93225.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106a]
gi|242136865|gb|EES23268.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106b]
Length = 350
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 90 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 145
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 146 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 205
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 206 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 264
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 265 RTLYYHSTNVLLRDSAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 324
Query: 255 VSASL 259
+A L
Sbjct: 325 DAARL 329
>gi|167848574|ref|ZP_02474082.1| family S11 unassigned peptidase [Burkholderia pseudomallei B7210]
Length = 349
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S + + ++D +TG + + AS+TKLMTA VV L
Sbjct: 89 ASQSFGLRSNIVYMVDQHTGETLFDRNSRSVVPIASVTKLMTAMVVLDSNAP----LDER 144
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I ++ + + + S ++ D+ L + ++ S N A A++ + FV M
Sbjct: 145 IEVTDDDRDQDKFTGSRLAIGSALSRDDMLHIALMASENRAAAALSRYYPGGREAFVDAM 204
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--- 195
N +++LG+ T+F N G+ + ++ARD+A + + +K
Sbjct: 205 NRKARSLGMVDTYFENPTGL-SKHNVSSARDLAKMVEAAYQYPLIRQYSTDLKYDVDTGL 263
Query: 196 KGKKYPNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y +TN + G KTG+ SG +V + ++ V+L + R++
Sbjct: 264 RTLYYHSTNVLLRDSAWNIGVQKTGYIKESGICLVMQTTIDGRDVVMVLLDSAGRHSDFF 323
Query: 255 VSASL 259
+A L
Sbjct: 324 DAARL 328
>gi|326563690|gb|EGE13942.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 103P14B1]
gi|326566458|gb|EGE16608.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis BC1]
gi|326573300|gb|EGE23268.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 101P30B1]
gi|326575803|gb|EGE25726.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis CO72]
Length = 386
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/255 (20%), Positives = 104/255 (40%), Gaps = 16/255 (6%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
F ++ + + + D G +I D + AS++K+MTA V+ + +
Sbjct: 129 SFYALPISTRSAAVLVYDLQDGKLIYGKNADVQRSIASISKVMTAMVILDAELDMR---E 185
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I+ + +++ K G MT +++++S N A A+A + F+
Sbjct: 186 EITLIASDLIGAKQASTRLKAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYDAFIAA 245
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEI 195
MN + +LG+ T F ++ G+ + ++A D+ I+ + ++ +
Sbjct: 246 MNQKAYDLGMYQTKFSDSSGL-DPRNMSSANDLLIMMKAVNSSPRYHSIRNFSTAPHYDF 304
Query: 196 KGKKY---------PNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILG 245
Y NTN V G KTG+ +G+++V ++ I V+LG
Sbjct: 305 YIANYGSGDRIYKGNNTNRLVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAIVVLLG 364
Query: 246 ALDRNTRNKVSASLL 260
A + R + ++L
Sbjct: 365 ASNSANRWSDAETIL 379
>gi|302559594|ref|ZP_07311936.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
Tu4000]
gi|302477212|gb|EFL40305.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
Tu4000]
Length = 282
Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/276 (21%), Positives = 107/276 (38%), Gaps = 16/276 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+IA L + A + +++ TG + D + S TK+MTA VV
Sbjct: 6 VIASGALYAAPAQAATAPSVVAKGGYVMNNATGKSLYTKAADTRRSTGSTTKIMTAKVVL 65
Query: 67 SFLKEK-KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+ A +T + S + S++ G +T+ L L++ S D A A+A+
Sbjct: 66 AQKNLNLDAKVTIQMAYSDYIVKNNASSARLIVGDKVTVRQLLYGLMLPSGCDAAYALAD 125
Query: 126 SLCKTEKKFVQ------HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL------ 173
+ + MN + +GL THF + G+ + +Y+T RD+ +
Sbjct: 126 KFGTGSTRAARVKSFIGKMNAEATKMGLKNTHFDSFDGIGKGSNYSTPRDLTKIASSAMK 185
Query: 174 ---SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
I G + NTN + ++ G G+KTG + + +V
Sbjct: 186 SSTFRSIVKTKKYTAKTVTKTGSTRTMAPWTNTNTLLSSYSGTIGVKTGSGPEAKYCLVF 245
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+A + +++I +L + R + LL GF
Sbjct: 246 AATRNGKTVIGTVLASSSATQRETDAKKLLGYGFSK 281
>gi|326560224|gb|EGE10612.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 7169]
gi|326562868|gb|EGE13155.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 46P47B1]
gi|326570266|gb|EGE20311.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis BC8]
gi|326571002|gb|EGE21026.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis BC7]
gi|326576883|gb|EGE26789.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis O35E]
Length = 386
Score = 107 bits (266), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/255 (20%), Positives = 104/255 (40%), Gaps = 16/255 (6%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
F ++ + + + D G +I D + AS++K+MTA V+ + +
Sbjct: 129 SFYALPISTRSAAVLVYDLQDGKLIYGKNADVQRSIASISKVMTAMVILDAELDMR---E 185
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I+ + +++ K G MT +++++S N A A+A + F+
Sbjct: 186 EITLIASDLIGAKQASTRLKAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYDAFIAA 245
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEI 195
MN + +LG+ T F ++ G+ + ++A D+ I+ + ++ +
Sbjct: 246 MNQKAYDLGMYQTKFSDSSGL-DPRNMSSANDLLIMMKAVNSSPRYHSIRNFSTAPHYDF 304
Query: 196 KGKKY---------PNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILG 245
Y NTN V G KTG+ +G+++V ++ I V+LG
Sbjct: 305 YIANYGSGDRIYKGNNTNRLVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAIVVLLG 364
Query: 246 ALDRNTRNKVSASLL 260
A + R + ++L
Sbjct: 365 ASNSANRWSDAETIL 379
>gi|167580237|ref|ZP_02373111.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis TXDOH]
Length = 355
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/255 (20%), Positives = 91/255 (35%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 99 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVVPIASVTKLMTSMVALDTRAP 158
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS + + L + ++ S N A A++
Sbjct: 159 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLPRRDMLHIALMSSENRAAAALSRDYPGG 214
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ T +++ + +
Sbjct: 215 RPAFVAAMNRKARTLGMKHTHFVNATGLSPRNVSTARDLSRLVAAASRYPHIKSFSTDTS 274
Query: 191 KGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
K + + N KTGF +G +V + + V+LGA
Sbjct: 275 KTVFPGRGQLHYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAP 334
Query: 248 DRNTRNKVSASLLSM 262
+A +
Sbjct: 335 GPRDHVADAAKIRRW 349
>gi|149377678|ref|ZP_01895414.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Marinobacter
algicola DG893]
gi|149358031|gb|EDM46517.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Marinobacter
algicola DG893]
Length = 304
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 48/273 (17%), Positives = 100/273 (36%), Gaps = 15/273 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M + +++A+ +L ++ ++A + + G V D A
Sbjct: 1 MIRTAIVLALTVLCSLNVSRAMAIERSELQLASVNAAVAYADDEGLV-YGKNADRRVPIA 59
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S+TKLMTA VV + L ++ + + + S + + L++ ++
Sbjct: 60 SITKLMTALVVMESGEPLTEWLDFRE---RHIPAPANAYTRIRVSSELRRSDVLRIALMS 116
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S N A +A F++ MN + LG+ T F++ G+ T A + ++
Sbjct: 117 SENFAAHTLARHHPGGYDAFIEAMNAKAVELGMLKTTFVDPTGLSVDNRSTAADLVRLVR 176
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYP----NTN-WAVGTFLGADGMKTGFTCASGFNIV 229
+ + + + + +Y NTN G KTG+ +G +V
Sbjct: 177 AASQYPQIREYSTTRYFTAQFRQPRYRLAFGNTNVLVHRESWGVGISKTGYLSEAGRCLV 236
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+ L+ V+L +L + + +
Sbjct: 237 MLFELDGKPLVTVLLDSLGTRSPMGDAGRIKRW 269
>gi|331014403|gb|EGH94459.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 311
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/265 (20%), Positives = 96/265 (36%), Gaps = 13/265 (4%)
Query: 7 IIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ L+N L+ + ++D T V+ + PD AS+TKLMTA
Sbjct: 18 AFSTTALANESAVLNRDPSNLHLASGSAMVVDLQTDKVLYSSNPDVIVPIASVTKLMTAM 77
Query: 64 VVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+V + + I ++ E S K GS M + L + ++ S N A +
Sbjct: 78 IVLDAKQ----SMDEVIPVNISQTPEMKGVFSRVKLGSEMNRRDMLLITLMSSENRAAAS 133
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A S F+ MN +K LG+ T ++ + + T ++ K
Sbjct: 134 LAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTSLSVYNVSTARDLTKLVMAARKYPLL 193
Query: 183 QYMHYFQIKGLEIKGKKY-----PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + K + + Y + KTGFT +G +V ++
Sbjct: 194 SELSTTEQKTVTFRKPTYILGFSNTDHLVRKENWDIKLTKTGFTNQAGHCLVLLTSMANR 253
Query: 238 SLIAVILGALDRNTRNKVSASLLSM 262
+ VIL A + T ++ +
Sbjct: 254 PVSVVILDAFGKYTHFADASRIRKW 278
>gi|330445937|ref|ZP_08309589.1| penicillin-binding protein 7 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490128|dbj|GAA04086.1| penicillin-binding protein 7 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 298
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/276 (18%), Positives = 99/276 (35%), Gaps = 18/276 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------SIAETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
MR ++ + ++D +TG + + +
Sbjct: 1 MRNAFILFFTLASISFSSVASINTSKLDPNKLQTASVSNYVIDLSTGKTLYKKNANVKMP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLL 111
ASLTKLMTA V K L +T + + + + + GST++ + +
Sbjct: 61 IASLTKLMTAMVTLDA----KLPLNEKLTFTPTDKKRMYNTYTRIRMGSTLSRGETIHIA 116
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ S N A +A + F++ MN +K+LG++ THF+++ G+ H T +
Sbjct: 117 LMSSENLAAATLAGNYPGGYNAFIKAMNRKAKSLGMTNTHFVDSSGLDPHNRSTASDVAK 176
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVGTFLG-ADGMKTGFTCASGF 226
++ K + + Y NTN + KTGF +G
Sbjct: 177 MVRAAYKYPEIRKYSTTPVHTAYFGKPNYKLGYTNTNALARGKKWTVNVTKTGFLDEAGR 236
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+ + ++ V+L + + T + +
Sbjct: 237 CLGMVTTIDGKKILMVMLDSQGKLTPIGDAGRIKQW 272
>gi|326565231|gb|EGE15416.1| D-alanyl-D-alanine endopeptidase [Moraxella catarrhalis 12P80B1]
Length = 386
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 51/255 (20%), Positives = 104/255 (40%), Gaps = 16/255 (6%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
F ++ + + + D G +I D + AS++K+MTA V+ + +
Sbjct: 129 SFYALPISTRSAAVLVYDLQDGKLIYGKNADVQRSIASISKVMTAMVILDAELDMR---E 185
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I+ + +++ K G MT +++++S N A A+A + F+
Sbjct: 186 EITLIASDLIGAKQASTRLKAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYDAFIAA 245
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEI 195
MN + +LG+ T F ++ G+ + ++A D+ I+ + ++ +
Sbjct: 246 MNQKAYDLGMYQTKFSDSSGL-DPHNMSSANDLLIMMKAVNSSPRYHSIRNFSTAPHYDF 304
Query: 196 KGKKY---------PNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILG 245
Y NTN V G KTG+ +G+++V ++ I V+LG
Sbjct: 305 YIANYGSGDRIYKGNNTNRLVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAIVVLLG 364
Query: 246 ALDRNTRNKVSASLL 260
A + R + ++L
Sbjct: 365 ASNSANRWSDAETIL 379
>gi|323529337|ref|YP_004231489.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. CCGE1001]
gi|323386339|gb|ADX58429.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
sp. CCGE1001]
Length = 414
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 12/244 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-K 84
+ ++D T V+ E D AS++KLMTA V L P+ ++ +
Sbjct: 170 LRARSVFVVDERTQTVLTEKEADRVMPIASVSKLMTAVVSLDARH----ALDAPLRVTVQ 225
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ + S GS ++ + L + ++ S N A A++ FV MN ++
Sbjct: 226 DQDFDKFTGSRLSVGSVLSRHDMLHIALMSSENRAAAALSRDYAGGRPGFVAAMNAKARA 285
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKK 199
LG+ T F+N G+ + +TARD+A L + + + G
Sbjct: 286 LGMRRTSFVNGTGL-SPHNVSTARDLARLVAAASRYPLIRAYSTDRDQMVFPGGPRASLS 344
Query: 200 YPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
Y N+N G KTGF +G +V + + + V+LGA
Sbjct: 345 YHNSNALVRGGDRSIVLQKTGFINEAGHCVVVRMMVHGRPIDIVVLGAPGPRDHIADVIR 404
Query: 259 LLSM 262
+
Sbjct: 405 IRRW 408
>gi|313884857|ref|ZP_07818609.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619548|gb|EFR30985.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola
ACS-139-V-Col8]
Length = 394
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 57/309 (18%), Positives = 120/309 (38%), Gaps = 31/309 (10%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
Y +D T V+A+ + P+ AS++K+++ Y+V+ + E K + I+I
Sbjct: 69 DARSYIAIDQETNRVLAQQEGNKPYPIASMSKIISTYLVYQAIDEGKLSMDQMISIDPAI 128
Query: 87 SEYPPSNSTFK-----KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ SN ++++ L +++ S ND A+ + +E+ V M++
Sbjct: 129 IDNYTSNPNLSNVGLVADQEYSVEDLLNGVLLSSGNDATSALMWQIYGSEEAGVNAMSDL 188
Query: 142 SKNLGLSATHFMNAHGVV---------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
+ G++ ++ G + +A D+A+++ + TDFPQ +
Sbjct: 189 LHSWGINNFKLVSVSGTPNIELAENIRIPGTGENDENTMSAADIALVAQHLITDFPQVLD 248
Query: 187 YFQIKGLEIK-----GKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ K + N N G G+K+GFT +G VA++ + +
Sbjct: 249 ITNSDSYQFKAGTDYEQTLVNNNLLRAGQEYGRDGITGLKSGFTDGAGRCFVATSTENGR 308
Query: 238 SLIAVILGALDRNTR-NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296
+IAV +G + + LL D K + + Q + + + S+
Sbjct: 309 KVIAVTMGTFTDQSNSYWETEILLDELL-KFPDLYKNEALPTNLPQADPKEDEASESDSS 367
Query: 297 CTTQKEIIN 305
+ +
Sbjct: 368 ESNSDKKEK 376
>gi|317473054|ref|ZP_07932354.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
gi|316899483|gb|EFV21497.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
Length = 302
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 95/243 (39%), Gaps = 11/243 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ L + +G ++ + PASLTK+MT + + + +
Sbjct: 44 QVSDQKIYSDAAVLAEQKSGRILMNKQGNKKIYPASLTKIMTVLLAVESVSNDEKEILMN 103
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
I ++ ++ S + F G + + + ++ S + + +A L +E+KF MN
Sbjct: 104 QDIFQSLAQSHASVAGFLPGERVKIKDLYYGAMLPSGAECCLRLANYLAGSEEKFALLMN 163
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ +G+ T+F+N+ G+ H +TA D+ IL + + ++ +K
Sbjct: 164 QKAREIGMKHTNFVNSTGLHDPKHVSTAEDLEILLRYALKNPRFRKVFETMQYRTEPTQK 223
Query: 200 YP-----------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+P + T G KTG+T +G + + + I V GA
Sbjct: 224 HPEGLLLQSTLTDYKDQLKPTNGSFLGGKTGYTKEAGLCLASWVNIRGKRYILVTAGARG 283
Query: 249 RNT 251
+
Sbjct: 284 DHQ 286
>gi|167900376|ref|ZP_02487777.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 7894]
gi|167924801|ref|ZP_02511892.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei BCC215]
Length = 378
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 10/256 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 122 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIEKNANRVMPIASVTKLMTSMVALDTRAP 181
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 182 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGG 237
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ + +TARD++ L
Sbjct: 238 RPAFVAAMNRKARTLGMKRTHFVNATGL-SPRNVSTARDLSRLVAAASRYPRIKTFSTAT 296
Query: 191 KGLEI---KGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+Y N++ KTGF +G +V + + V+LGA
Sbjct: 297 SKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGA 356
Query: 247 LDRNTRNKVSASLLSM 262
+ +A +
Sbjct: 357 PGPHDHVADAAKIRRW 372
>gi|299144553|ref|ZP_07037632.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298517641|gb|EFI41381.1| serine-type D-Ala-D-Ala carboxypeptidase [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 290
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 60/280 (21%), Positives = 108/280 (38%), Gaps = 22/280 (7%)
Query: 3 QFLVIIAMAMLSNIFPFLS---IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
FL++I ++ + F + ++D + +I E + ASLTKL
Sbjct: 10 IFLMVIVISAGLTLLYFCNNKLAKIDYNSKAICVMDADKNKIIFEKNANEKLKIASLTKL 69
Query: 60 MTAYVVFSFL-KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
MT V ++ + KN S F + + + L ++ S +
Sbjct: 70 MTVLVAIEKNLDWEEISPVDVES-YKNMVASNASMVGFYGRERVKVKDLLYGTMLASGGE 128
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A+++A + + FV MN +K LGL T+F N G+ + +Y+TARDMA+L
Sbjct: 129 AAMSLAIKSSGSLENFVIDMNEKAKELGLKETNFSNPVGMDEENNYSTARDMALLLNEAI 188
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNW-----------AVGTFLGADGMKTGFTCASGFN 227
+ + + +PN T G K+G T +G
Sbjct: 189 KNEEFKKIFTAKNYTTTETLDHPNGINIESTVLKEISDEDKTDFKILGGKSGTTKEAGLC 248
Query: 228 IVASAIQGDQSLIAVILGALDRNTRN------KVSASLLS 261
+ +G+++ I V++GA RN + + +L
Sbjct: 249 WATLSKKGEKNYIIVVIGAPLDELRNPTMLQKEDTIKILE 288
>gi|325263833|ref|ZP_08130566.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
gi|324030871|gb|EGB92153.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. D5]
Length = 425
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 60/294 (20%), Positives = 119/294 (40%), Gaps = 34/294 (11%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+++ NTGHV+ + P W PAS++KLMT + + ++E + L T + ++ +
Sbjct: 29 IIVEINTGHVLWQENPQISWEPASMSKLMTILLAYDAIQEGEFSLDTQVPVTDKYLDIAG 88
Query: 92 S----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
N+ G++ T+ + L+IV S+ +A+ + KFV +N + +LG+
Sbjct: 89 RYSLSNNKMLAGASYTVAELIDLIIVPSSAAATYMLADLIEPDPDKFVTLLNERASSLGM 148
Query: 148 SATHFMNAHGVVQ--------------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
T + N GV + TT D A+L +P +++ + +
Sbjct: 149 KNTRYYNPVGVPNELLVPYQPVNASLTDVNVTTPEDYALLCCYFVKTYPDILNHTKHPKI 208
Query: 194 EIKGKKYPNTNWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
IK + + G DG+KTG N ++A++G+ L+ +++
Sbjct: 209 VIKEGTPYEEKFDTYQYSLEGAKYSLKGTDGLKTGSNQNGF-NYSSTALRGNTRLVEIVM 267
Query: 245 G-ALDRNTRNKVSASL-----LSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
G + + + L + F N RK + I + + +
Sbjct: 268 GVSKWEDQAGEEMRHLIGNAIMEQAFQNFEYRKVLEKGIHTINNKKIEVKKDLW 321
>gi|167745400|ref|ZP_02417527.1| hypothetical protein ANACAC_00091 [Anaerostipes caccae DSM 14662]
gi|167655121|gb|EDR99250.1| hypothetical protein ANACAC_00091 [Anaerostipes caccae DSM 14662]
Length = 302
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 46/243 (18%), Positives = 95/243 (39%), Gaps = 11/243 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ L + +G ++ + PASLTK+MT + + + +
Sbjct: 44 QVSDQKIYSDAAVLAEQKSGRILMNKQGNKKIYPASLTKIMTVLLAVESVSNDEKEILMN 103
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
I ++ ++ S + F G + + + ++ S + + +A L +E+KF MN
Sbjct: 104 QDIFQSLAQSHASVAGFLPGERVKIKDLYYGAMLPSGAECCLRLANYLAGSEEKFALLMN 163
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
++ +G+ T+F+N+ G+ H +TA D+ IL + + ++ +K
Sbjct: 164 QKAREIGMKHTNFVNSTGLHDPKHVSTAEDLEILLRYALKNPRFRKVFETMQYRTEPTQK 223
Query: 200 YP-----------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+P + T G KTG+T +G + + + I V GA
Sbjct: 224 HPEGLLLQSTLTDYKDQLKPTNGSFLGGKTGYTKEAGLCLASWVNIRGKRYILVTAGARG 283
Query: 249 RNT 251
+
Sbjct: 284 DHQ 286
>gi|153811304|ref|ZP_01963972.1| hypothetical protein RUMOBE_01696 [Ruminococcus obeum ATCC 29174]
gi|149832431|gb|EDM87515.1| hypothetical protein RUMOBE_01696 [Ruminococcus obeum ATCC 29174]
Length = 334
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 58/253 (22%), Positives = 100/253 (39%), Gaps = 24/253 (9%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ LLD V+ PAS+TK++TA + F + +TI++
Sbjct: 83 QAQKGVLLDLKDKSVLYAKGAYDKVYPASITKIITALLAFKNS-----NMDDVVTITQEN 137
Query: 87 SE--YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
F+ G +T+D + L+V S ND A AIA + + + FV MN +
Sbjct: 138 ITLEEGSQVVGFQVGDQVTMDQLVHCLLVYSGNDAASAIATHVGGSTENFVAMMNEYAAQ 197
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK------ 198
LG + THF N HG+ HYTT D+ ++ +P++ Q+ + +
Sbjct: 198 LGCTGTHFTNPHGLQDENHYTTPYDIYLMLKEAL-KYPEFTEITQLPSYTVTFQHSDGSE 256
Query: 199 ---------KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALD 248
Y + G KTG T ++G + + +++++GA
Sbjct: 257 DSVSLTATDHYLTGEANAPKGVTVLGGKTGTTSSAGNCLALLCQNSYGEPYVSIVMGAST 316
Query: 249 RNTRNKVSASLLS 261
+ + SLL
Sbjct: 317 KELLYQQMTSLLE 329
>gi|296113230|ref|YP_003627168.1| D-alanyl-D-alanine carboxypeptidase [Moraxella catarrhalis RH4]
gi|295920924|gb|ADG61275.1| D-alanyl-D-alanine carboxypeptidase [Moraxella catarrhalis RH4]
Length = 386
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 51/255 (20%), Positives = 104/255 (40%), Gaps = 16/255 (6%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
F ++ + + + D G +I D + AS++K+MTA V+ + +
Sbjct: 129 SFYALPISTRSAAVLVYDLQDGKLIYGKNADVQRSIASISKVMTAMVILDAELDMR---E 185
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
I+ + +++ K G MT +++++S N A A+A + F+
Sbjct: 186 EITLIASDLIGAKQASTRLKAGDRMTRSEFTLMMLMRSENPAAKALARTYPGGYDAFIVA 245
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEI 195
MN + +LG+ T F ++ G+ + ++A D+ I+ + ++ +
Sbjct: 246 MNQKAYDLGMYQTKFSDSSGL-DPRNMSSANDLLIMMKAVNSSPRYHSIRNFSTAPHYDF 304
Query: 196 KGKKY---------PNTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILG 245
Y NTN V G KTG+ +G+++V ++ I V+LG
Sbjct: 305 YIANYGSGDRIYKGNNTNRLVREGAYPIGVQKTGYIREAGYSVVMETNINNRPAIVVLLG 364
Query: 246 ALDRNTRNKVSASLL 260
A + R + ++L
Sbjct: 365 ASNSANRWSDAETIL 379
>gi|299538496|ref|ZP_07051779.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus fusiformis ZC1]
gi|298726083|gb|EFI66675.1| D-alanyl-D-alanine carboxypeptidase [Lysinibacillus fusiformis ZC1]
Length = 305
Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats.
Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 11/233 (4%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L++ + ++ + + PASLTK+MT V + + + P I ++
Sbjct: 55 SSNAILVNLDENQIVLDKKSEEKIYPASLTKMMTVLVAIEQISNLQEEIILPKHIFRDLL 114
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
E S + F +T+++ L ++ S + ++ +AE + +E+ FV+ MN ++ LG+
Sbjct: 115 EENASVAGFLPNEKVTVEDLLYGSMLPSGAEASLGLAEYVAGSERGFVKLMNEKAQQLGM 174
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG-----------LEIK 196
THF+N G+ HYTT +DM++L T+ Y + +
Sbjct: 175 KNTHFVNTTGLHHSDHYTTVKDMSLLLQYALTNDDFRNVYTAERYSIKSTNLHPEGITFT 234
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ + + + G KTG+T +G + + A+ Q + V +GA
Sbjct: 235 SRMFQHMTSSALPGGEILGGKTGYTEDAGLCLASLALINGQEYVLVTVGADGS 287
>gi|260899160|ref|ZP_05907555.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus AQ4037]
gi|308110607|gb|EFO48147.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus AQ4037]
Length = 181
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 6/167 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + F + A Y L+D ++G V+AE + +PASLTK+MT+
Sbjct: 15 VALSATFAQSAFASPVVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTS 74
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
YV+ L +TISKNA S + G+T+ + + + +I++S ND
Sbjct: 75 YVIGQELARGNISEDDDVTISKNAWAKNFPDSSKMFIEVGTTVKVRDLNRGIIIQSGNDA 134
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
VA+AE + +E FV MN + LG+ +HF N HG+ Y+T
Sbjct: 135 CVAMAEHIAGSEDAFVDLMNAWANTLGMKNSHFANVHGLDNSELYST 181
>gi|331086263|ref|ZP_08335343.1| hypothetical protein HMPREF0987_01646 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406029|gb|EGG85552.1| hypothetical protein HMPREF0987_01646 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 445
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 59/338 (17%), Positives = 127/338 (37%), Gaps = 38/338 (11%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ + +TG ++ E D W PAS+TKLMT + + ++E K + +++ ++
Sbjct: 62 IITEIHTGQILWEENKDVSWAPASMTKLMTILLAYDAMEEGKFEKDMQVAVNEKYTDIAG 121
Query: 92 SNSTFKKGSTMTLDNA----LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ M + L+IV S+ +A+ + KFV MN +K +G+
Sbjct: 122 RYALSNNVMQMGATYTVGELIDLIIVPSSAAATYMLADLVEPDPDKFVALMNQKAKEIGM 181
Query: 148 SATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
+ T + N GV + T+ +D A+L +P + + +
Sbjct: 182 THTTYYNCVGVTNDLLYPYAPKNLPADADNVTSPQDYALLCSYFVKTYPDILTHTSSPEI 241
Query: 194 EIKGKKYPNTNWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+K ++ G DG+KTG + +GFN ++A + D L+ +++
Sbjct: 242 VVKEGTPYEEHFKSYQISLEGAKYGLKGTDGLKTGSSGRAGFNYSSTAKRQDTRLVEIVM 301
Query: 245 GALD------RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
G D R+ V +++ F RK + ++ + +++
Sbjct: 302 GVSDWTDQTGEELRHLVGNAIMEQAFEKYEYRKVLPKGTHQIGKEKIV-----TKKDLWD 356
Query: 299 TQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ +M++ K + + ++
Sbjct: 357 CVPKEEKIKFKMEDGKVFVDLERQYLPGYAAPSVTYQQ 394
>gi|295107786|emb|CBL21739.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus obeum A2-162]
Length = 307
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 11/235 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
PY L+ G VI E + PAS+TK+MT V LK+ +T + +
Sbjct: 48 INSPYAVLMQVRGGRVIGEINGEEQMYPASMTKIMTTIVAIENLKDLDQEITLTNEMFEG 107
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
E + + F+ G T+ + L +++ S + +A+A+++ +E FV MN + L
Sbjct: 108 LYEQDATQAGFQPGETVRAIDLLYGVMLPSGAECCIALADTIAGSEADFVTLMNEKAAKL 167
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL-----------E 194
G++ T+F + G+ HY+T +D+A+L D
Sbjct: 168 GMTGTNFCDTTGLHDANHYSTVKDIAVLLKYALKDDTFREIIESPYYSTPGTNIHPDGIT 227
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ N + T G KTG+T +G + + A I V GA
Sbjct: 228 FYSTMFKNLSDTAVTDGKIMGGKTGYTGEAGHCLASFAEIDGTEYILVTGGASGT 282
>gi|134094725|ref|YP_001099800.1| D-alanyl-D-alanine-endopeptidase [Herminiimonas arsenicoxydans]
gi|133738628|emb|CAL61673.1| putative Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
[Herminiimonas arsenicoxydans]
Length = 274
Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats.
Identities = 52/236 (22%), Positives = 92/236 (38%), Gaps = 8/236 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ ++D TG ++ E ASLTKLMTA +V + + I I+ +
Sbjct: 24 SKHAIVIDEATGKILFEKNSSDIVPIASLTKLMTAMLVLDA----RLDMHEHIMITDDDV 79
Query: 88 EYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ +S+ S +T + L+L ++ S N A A+A + + F N + L
Sbjct: 80 DTLKFSSSRVPVGSMLTRNTLLELALMSSDNRAAHALARTYPGGIEHFRLAARNKAHALS 139
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG--KKYPNTN 204
L T+ G+ + T + + + + + +++ + Y NTN
Sbjct: 140 LRRTNIEEPTGLSPYNTSTASDLARLAMAAARYPEIERITTSAGDLIDLGSSARHYHNTN 199
Query: 205 WAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
VG KTG+T +G I+ + I V+L A R + SL
Sbjct: 200 KLVGDKNWTISLSKTGYTQEAGRCIIMRVRTAGRDAIMVLLNARASANRTADAVSL 255
>gi|258513818|ref|YP_003190040.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Desulfotomaculum acetoxidans DSM 771]
gi|257777523|gb|ACV61417.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Desulfotomaculum acetoxidans DSM 771]
Length = 373
Score = 106 bits (263), Expect = 5e-21, Method: Composition-based stats.
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 11/243 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P L++ ++ + + PASLTK+MTA V L + K +T
Sbjct: 79 SVSISPGELNSPNAILINLKDHTILMQKNSEEKIYPASLTKMMTAIVAIENLPDLKKEIT 138
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
++ + SE S + F+ G + + L ++ S + V +A+ + +EK FV
Sbjct: 139 LTDSVFRGLSEADASMAGFRPGENVRAIDLLYGALLPSGAESCVELADYIAGSEKDFVGM 198
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
MN + +LG+ T+F N+ G+ HYTT +D+A+L + + +
Sbjct: 199 MNQKAADLGMYNTYFENSTGLQNENHYTTVKDLAVLLSYALQNDTFREIFTSTRHSTPPT 258
Query: 198 KKYPNT-----------NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
K+P+ N T G KTG+T +G + + A G Q + GA
Sbjct: 259 NKHPDGITFYSTMFDELNNRSITDGKILGGKTGYTAEAGLCLASLAQVGKQEYSLISAGA 318
Query: 247 LDR 249
Sbjct: 319 KGD 321
>gi|221632462|ref|YP_002521683.1| beta-lactamase [Thermomicrobium roseum DSM 5159]
gi|221156002|gb|ACM05129.1| beta-lactamase [Thermomicrobium roseum DSM 5159]
Length = 364
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 68/315 (21%), Positives = 116/315 (36%), Gaps = 25/315 (7%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + T +D G + D P PAS TKLMTA VV +
Sbjct: 30 SSAYQPAERPTLTARASFAVDITAGVELWAQEADRPLPPASTTKLMTALVV-----RRWL 84
Query: 75 MLTTPITISKNA--SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE------- 125
ITI + +N+ F+ G +T+ + L +++ SA D A+A+A
Sbjct: 85 RPDESITIRSDDLVDPAVYANAGFQPGDRVTVTDLLAAMLIASAGDAALALARVAGERID 144
Query: 126 -SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF--- 181
F+ MN + LGL + F G G +ARD+AI++ + +D
Sbjct: 145 PEHDVPRTAFIDAMNQEAARLGLRHSWFATPDGRDVPGQTVSARDLAIIAAAVLSDPLLA 204
Query: 182 ---PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+I G + + NTN + A G+KTG + A+G +VA+ +G+
Sbjct: 205 ELVATRTREIEIAGPQSRRITVVNTNQFLTE-PDALGVKTGTSVAAGQCLVAAVRRGNDI 263
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
++ V+L R + +LL+ + + VP + V
Sbjct: 264 VVLVLL---SSRDRYADARALLTYLDRQYRWFTLDGRSFAELARLAREGIVPALVPTVVV 320
Query: 299 TQKEIINYNTQMKEA 313
+ +
Sbjct: 321 ANETADQVRVIIDRQ 335
>gi|160880498|ref|YP_001559466.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
phytofermentans ISDg]
gi|160429164|gb|ABX42727.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
phytofermentans ISDg]
Length = 342
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 64/254 (25%), Positives = 101/254 (39%), Gaps = 19/254 (7%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D V+ PAS TKL+TA +V K + I
Sbjct: 90 PAIPAIAAFMIDDTDHQVLFAKNVYDRIYPASTTKLLTALIVL---KYGDLKDSVTIEKD 146
Query: 84 KNASEYPPSN-STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ FK G ++++ L L+V S ND AVAIAE + + ++FV+ MN +
Sbjct: 147 NAGVTTYGAKLCNFKAGDVVSMETLLNCLLVYSGNDAAVAIAEHMYGSVEEFVKKMNEEA 206
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI--------KTDFPQYMHYFQIKGLE 194
N+G + THF N HG+ HYTTA DM ++ Y K +
Sbjct: 207 ANIGATNTHFTNPHGLHDPNHYTTAYDMYLIFKECLKYEKFVPIIKQINYEASITDKDGK 266
Query: 195 IKGKKYPNTNWAVGTFL------GADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGAL 247
++ K Y TN + G KTG T +G ++ + ++ I+ + A
Sbjct: 267 LRRKSYETTNMFLLGTKETPEGVTVFGGKTGSTGDAGDCLILYSNSADGKAYISAVFKAA 326
Query: 248 DRNTRNKVSASLLS 261
+ + A LL
Sbjct: 327 GKTSLYNQHAHLLE 340
>gi|320528533|ref|ZP_08029690.1| serine-type D-Ala-D-Ala carboxypeptidase [Solobacterium moorei
F0204]
gi|320131119|gb|EFW23692.1| serine-type D-Ala-D-Ala carboxypeptidase [Solobacterium moorei
F0204]
Length = 398
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 75/354 (21%), Positives = 136/354 (38%), Gaps = 33/354 (9%)
Query: 1 MRQFLVIIA-------MAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAENYP 47
M++ L + + L+ + P + T Y LD +TG V++
Sbjct: 1 MKKLLTKLFTTITCTLVIALTTLLPVTAADATFDLGKNLYSTNYIFLDADTGQVLSAKKQ 60
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D + ASLTK+MT + +T + + S + + G T TL +
Sbjct: 61 DEQISIASLTKMMTVLLAIENSSSLNQTVTITDEMIDGLYDEQASVAGYINGDTATLLDL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
V SA D A A+A + + +KF Q MN+ + LG+ T F +AHG+ + G Y+T
Sbjct: 121 CYAAAVPSAADAANALAIQIGGSFEKFYQMMNDKAAQLGMDHTVFKSAHGLDRDGQYSTV 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD------------G 215
D++ L + P + F K + Y + + + A G
Sbjct: 181 EDISKLLRYALQN-PTFKEIFSTKEYTTQATAYYPFGIPLASTIWAYADTYGYNLTNLSG 239
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN---KVSASLLS--MGFYNKTDR 270
KTG+T +G I A D ++IAV GA + + ++L+ + KT
Sbjct: 240 GKTGYTLQAGRCIAYWATVNDMTIIAVTAGASTNVEQYSNLSDAQTVLTSLASWQKKTIL 299
Query: 271 KKINYIIKDFYQQNLSNEVPNIS--EEVCTTQKEIINYNTQMKEAKDKESHFID 322
K + + Y+ + ++ +++ + ++ K + D
Sbjct: 300 KSNDVVSTIEYKSFMHTANIDVKMDKDITLDLPANVECTYEVDLPKKFSAELYD 353
>gi|194336246|ref|YP_002018040.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308723|gb|ACF43423.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pelodictyon
phaeoclathratiforme BU-1]
Length = 390
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 63/276 (22%), Positives = 116/276 (42%), Gaps = 21/276 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY------YTLLDTNTGHVIAENYPDHPWNPASLT 57
F+V +A+ L+ + L Y + + + + +PASLT
Sbjct: 35 FVVFFVIAVTITPLFLLAQTGDDSLRSPFPINSYIVKERGGSKFLMAKDIEKSVSPASLT 94
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K++T + + L + I+K ++ PS + FK G + L + +K +V S+N
Sbjct: 95 KILTCIMAIESGR-----LEEDVLITKESTLVEPSKAGFKPGEKIRLIDLVKAAMVNSSN 149
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH---GHYTTARDMAILS 174
D A AIA L + FV MN ++ +G+ + F N G + G+ +TA D+ L+
Sbjct: 150 DAAFAIAIHLSGDVESFVAAMNYRAQRIGMRNSRFTNPAGFDKALYAGNSSTAEDLLHLT 209
Query: 175 WRIKTDFPQYM-----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ + K N + + A G+KTG+T +G ++
Sbjct: 210 EYAVKNPVFNQIARLEQVVFTEQTTRKVYSLKTHNKLLDKYPYAVGIKTGYTSTAGRCLI 269
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
A AI+ ++ ++ V+L A R ++A + F
Sbjct: 270 ARAIKDNRDILLVMLNAKT--DRWTIAADIFDSVFA 303
>gi|312867918|ref|ZP_07728122.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis F0405]
gi|311096322|gb|EFQ54562.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis F0405]
Length = 437
Score = 106 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 77/337 (22%), Positives = 135/337 (40%), Gaps = 36/337 (10%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
K ++D NTG ++ + D + S+ KLM+AYVVF LKE K T IT ++
Sbjct: 58 KPKADIVIDANTGAILYGDNIDTVRDSGSMAKLMSAYVVFRALKEGKIKYDTVITATEAD 117
Query: 87 SEYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNT 141
+ NS G + +K+L V S++ + +A + KF+ MN
Sbjct: 118 QAISENNLLSNSPIVAGVDYKVSELIKMLFVPSSSAAVIMLANAVTDNDPDKFLDLMNQY 177
Query: 142 SKNLGLSATHFMNAHGVV---------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
++ +G+S T + N +G + + TARDM+IL++ I D P+ +
Sbjct: 178 AQEMGMSHTKWHNPNGAMISVLQGYYNPQRYDVNANNEITARDMSILAYHIVNDLPEMLE 237
Query: 187 YFQIKGLEIKGKK-----YPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQ 237
Y + I Y N N ++ G DG+KTG + + +N A+ +G Q
Sbjct: 238 YTKQAHTTIMEGTPYEQSYDNYNTSLEGGKFALKGTDGLKTGSSPTADYNYTATTKRGKQ 297
Query: 238 SLIAVILGALDRNT------RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+I VILG + + RN++ +L F + +K ++ + +
Sbjct: 298 RIIEVILGVGNYDVEIAESYRNQIGNTLAEKMFADYQYKKILSAGD-HTIDGKTIHLKQD 356
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
V K + ++ K +
Sbjct: 357 FYATVKKGTKPALKLEDNRLVVQNGLQQVSPSIKPGV 393
>gi|169334052|ref|ZP_02861245.1| hypothetical protein ANASTE_00445 [Anaerofustis stercorihominis DSM
17244]
gi|169258769|gb|EDS72735.1| hypothetical protein ANASTE_00445 [Anaerofustis stercorihominis DSM
17244]
Length = 505
Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 67/345 (19%), Positives = 119/345 (34%), Gaps = 26/345 (7%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT---LLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+I+ + +L+ + A L + +T + + + PAS TK+MT
Sbjct: 14 FLIVVVLLLNITSNIYAAAPKVSKDSSLGLYLYEDSTKSELYSHNGNKKMYPASTTKIMT 73
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A + ++K N S ++ K T++ + L L++ S ND A+
Sbjct: 74 AALTLEYIK--DLNKKVTTGSELNRLPAGSSTASLYKNETLSYKDLLYGLMLPSGNDAAI 131
Query: 122 AIAESLCKTEKK------------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+A ++ K K FV+ MN +K +G++ THF N HG HY+T D
Sbjct: 132 VLACNVGKVISKDKNISKDKAYSVFVKEMNKKAKEIGMTKTHFNNPHGFHDKNHYSTPHD 191
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV--------GTFLGADGMKTGFT 221
MA+L+ K + + A G KTG+T
Sbjct: 192 MAVLAAYADDFSYYNRVVDSTYYETTTNKTTHRWSGHNALILRGSKYFYKPAKGDKTGYT 251
Query: 222 CASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
+G +V S+ AV+L + + ++ LL G + +
Sbjct: 252 GEAGRCVVGSSENDEGIRYYAVVLHSPTTAQQFGLARDLLKYGNEETSKLTIEEEGDTLY 311
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ + K+I Y + + F K
Sbjct: 312 KYTVRNLALGEQGAFKVKVNKDIEVYADKNYTEDNFTISFEPSSK 356
>gi|296138681|ref|YP_003645924.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tsukamurella
paurometabola DSM 20162]
gi|296026815|gb|ADG77585.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Tsukamurella
paurometabola DSM 20162]
Length = 432
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 54/281 (19%), Positives = 95/281 (33%), Gaps = 37/281 (13%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L + + + + D +G V+A P + PAS KL+ A V
Sbjct: 92 LVVPDGAPPVPQGIDSAGWLVADLTSGTVVAAKDPHGRYRPASTIKLLLAQVALRE---- 147
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L T ++ + + + G T+ L+ L++ S ND A A+A L +
Sbjct: 148 -LNLDTVVSGTAEDAAQEGDAAGVAPGGRYTVRQLLEGLLLISGNDTAHALARQLGGVDT 206
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+ MN+ +K+LG T + G+ G T+ D+A++ D ++ +
Sbjct: 207 AVAK-MNDLAKSLGAKDTRAITPSGLDGPGQTTSPYDLALILQNALRD-KRFTDIASTRQ 264
Query: 193 LEIK----------------------------GKKYPNTNWAVGTFLGADGMKTGFTCAS 224
+ N N + GA K G+T +
Sbjct: 265 ITFPGHPPVPTTGPATPLPPGGTPPPAPTSVAPYPIINENRMLTDVPGAVAGKNGYTDDA 324
Query: 225 GFNIVASAIQGDQSLIAV-ILG-ALDRNTRNKVSASLLSMG 263
V + + + + V + G A NT LL G
Sbjct: 325 KKTYVGAVDRDGKRYVVVQLFGLAYTGNTYWDQFRRLLDYG 365
>gi|260438393|ref|ZP_05792209.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio crossotus DSM
2876]
gi|292808979|gb|EFF68184.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio crossotus DSM
2876]
Length = 345
Score = 105 bits (262), Expect = 7e-21, Method: Composition-based stats.
Identities = 57/271 (21%), Positives = 104/271 (38%), Gaps = 23/271 (8%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+A++ ++ L+D NTG V+ + P PAS TK++T+ + +
Sbjct: 66 IAVVGADAVNSPGSDKITSDAALLVDVNTGEVLFQKNPHKKEYPASTTKILTSLIAIKYG 125
Query: 70 KEKKA-MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+ + I++N G + D A+ ++KS ND A +A
Sbjct: 126 DANSVRKVGDEVIINENNVVMCDFRQ----GDLIPFDIAIHGALMKSGNDAAAVLALFAA 181
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT--DFPQYMH 186
V MN +K+LG + ++F+N HG+ HYTT D+ ++ F +
Sbjct: 182 DNMSDAVALMNKEAKSLGATESNFVNPHGLYNDNHYTTVYDLYLIFNEAIKYSKFVDTLS 241
Query: 187 YFQIKGLEIKG---------KKYPNTN------WAVGTFLGADGMKTGFTCASGFNIVAS 231
+ G + Y N+N +A + G K G+T + + V
Sbjct: 242 CMKYTGSFTRKTAYGDYSIGCSYTNSNGFLTGSYATPDGIKVYGGKAGYTEVARRSYVML 301
Query: 232 AI-QGDQSLIAVILGALDRNTRNKVSASLLS 261
A I + + A + K ++LL+
Sbjct: 302 AESNNGHKYIIITMRAESNSLMYKDLSALLN 332
>gi|254298329|ref|ZP_04965781.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 406e]
gi|157808378|gb|EDO85548.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 406e]
Length = 454
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 54/256 (21%), Positives = 96/256 (37%), Gaps = 10/256 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 198 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSMVALDTRAP 257
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 258 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGG 313
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ HF+NA G+ + +TARD++ L
Sbjct: 314 RPAFVAAMNRKARTLGMKRMHFVNATGL-SPRNVSTARDLSRLVAAASRYPRIKTFSTAT 372
Query: 191 KGLEI---KGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+Y N++ KTGF +G +V + + V+LGA
Sbjct: 373 SKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGA 432
Query: 247 LDRNTRNKVSASLLSM 262
+ +A +
Sbjct: 433 PGPHDHVADAAKIRRW 448
>gi|170706123|ref|ZP_02896585.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0389]
gi|170129125|gb|EDS97990.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0389]
Length = 285
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 44/261 (16%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I ++ + + PA
Sbjct: 53 VVPPKYIPPEVDAKAAVIIDASNGDIIYQHNENEAFAPA--------------------- 91
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 92 -----------AQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFV 140
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 141 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 200
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 201 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 260
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L++ F
Sbjct: 261 MGTKGKTKRFTETNKLMTYAF 281
>gi|328954968|ref|YP_004372301.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Coriobacterium
glomerans PW2]
gi|328455292|gb|AEB06486.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Coriobacterium
glomerans PW2]
Length = 452
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 69/315 (21%), Positives = 125/315 (39%), Gaps = 48/315 (15%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA-----------------------ETNKLPYYTLLDTNT 38
R +VI A+ L P + A + + ++
Sbjct: 19 RLLIVICAVLALIVCMPARAHAETRADDLVCGESIAQRGLKQRNRPDIQAGHAIVM-GRD 77
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98
G E D AS+TK+MTA V S K+ + I + + A+ +++ ++
Sbjct: 78 GICYFERDADAQVKIASITKVMTALVALSHGKK-----SETIAVDRAAATVGEASAHLRE 132
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--------KFVQHMNNTSKNLGLSAT 150
G ++L++AL+ L++ S ND A+AIA ++ FV MN +K LG + T
Sbjct: 133 GDALSLEDALRCLLIPSGNDAALAIATAIGSEIDPTSSDPDGVFVNAMNEKAKQLGCTGT 192
Query: 151 HFMNAHGVV----QHGHYTTARDMAILSWRIKTDFPQY------MHYFQIKGLEIKGKKY 200
+F N HG+ ++TARD+AI+ D ++ + +
Sbjct: 193 NFTNPHGLDMDPWAGDMHSTARDVAIMVAAAMRDDTFRSIVGTGAARVTVRSADGASRTL 252
Query: 201 PNTNWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
++ G G+KTG T +G+ + + + V+LGA R SASL
Sbjct: 253 ELSDVNQMLNAQGNIGVKTGTTDEAGYCFAGAFSRDGNEVYTVVLGANTSQQRFDDSASL 312
Query: 260 LSMGFYNKTDRKKIN 274
+ + + + ++
Sbjct: 313 ATWYYAHAKRKPAVS 327
>gi|296120094|ref|ZP_06838648.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
ammoniagenes DSM 20306]
gi|295967248|gb|EFG80519.1| serine-type D-Ala-D-Ala carboxypeptidase [Corynebacterium
ammoniagenes DSM 20306]
Length = 480
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 55/248 (22%), Positives = 101/248 (40%), Gaps = 13/248 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + + D ++G ++A P + PAS+ K++ A V L +T +
Sbjct: 155 DVRASAWIVSDLDSGEIVAMKDPHGRYRPASILKVLLAMVAIDE-----LDLKKVVTGTD 209
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ S G T++ L+ L++ S ND A A+A+ L E+ + +N +++
Sbjct: 210 EDAAIDGSAVGIGPGGHYTVEQLLQGLLMASGNDAAHALAQQLGGDEETLTK-INQLAQD 268
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-----GLEIKGKK 199
LG +T + G+ G T+A DMA+L + +++G +
Sbjct: 269 LGARSTFAASYSGLDAPGMSTSASDMALLYTEAFKNPTFARMVGTDTAEFPGYGDLEGYE 328
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL-DRNTR-NKVSA 257
N N G KTG+T + V + + + L+AVIL D R + +
Sbjct: 329 LGNDNGLFMNDPDGIGGKTGYTDDANHTFVGALDRDGRRLMAVILDTTIDHGPRAWEQAQ 388
Query: 258 SLLSMGFY 265
LL +
Sbjct: 389 MLLDEAYD 396
>gi|56962947|ref|YP_174674.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
gi|56909186|dbj|BAD63713.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
Length = 304
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 56/247 (22%), Positives = 98/247 (39%), Gaps = 15/247 (6%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
PY +++ TG V+ E + PASLTK+MT V +++ A+ +T
Sbjct: 48 SPYIYVMERETGRVVYEENAEAKVYPASLTKIMTTIVALEQIEDLSAIAPVDVTTYHEMV 107
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
S + F +T + L ++ S + A ++A + + FVQ MN+ + LGL
Sbjct: 108 ASNASMAGFFGREDVTYRDLLYGTMLTSGGEAANSLAVHVGGNVENFVQMMNDKAAELGL 167
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---- 203
+ THF N G+ YTTA D+A L + + ++P+
Sbjct: 168 NGTHFTNPEGLHNEKQYTTASDIAKLLDYALNNSDFKTIFTTKMFQTTPTAEHPDGLLLQ 227
Query: 204 -------NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTR 252
+ G K+G T +G + D I +++GA R
Sbjct: 228 STVLTFLHKKEQDRFDILGGKSGTTYEAGQCWATLGLVEDTEYITIVMGAPLKDISHPDR 287
Query: 253 NKVSASL 259
+++ +L
Sbjct: 288 AQIADTL 294
>gi|229829069|ref|ZP_04455138.1| hypothetical protein GCWU000342_01154 [Shuttleworthia satelles DSM
14600]
gi|229792232|gb|EEP28346.1| hypothetical protein GCWU000342_01154 [Shuttleworthia satelles DSM
14600]
Length = 334
Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats.
Identities = 61/254 (24%), Positives = 110/254 (43%), Gaps = 25/254 (9%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+++ +GHV+ + PAS+TK++T + L+ +T+S+NA
Sbjct: 84 QSALVINETSGHVLYSKQANRKAYPASMTKVLTFLTAMRCGQ-----LSDTLTVSENALR 138
Query: 89 YPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
++ + G ++L AL +I+ S ND A+ IAE L + + F + MN T+ ++G
Sbjct: 139 VMEGSTMAGLRAGDQISLQEALYAMILPSGNDAAITIAEGLGGSTEHFAEEMNETAASIG 198
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---------KG 197
+ TH++ +G+ HYTTA DM ++ +P + K +
Sbjct: 199 ATHTHYVTVNGLHDDNHYTTANDMYLIFHEAL-KYPIFRDIISSKTHTGSFQSSGGLKRT 257
Query: 198 KKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRN 250
+ NTN + + G KTG T +G +V + + +I++I A +
Sbjct: 258 LTWKNTNRYLQGSIQSPSDMTVVGGKTGTTDQAGACLVLLSKNARGEEIISIIFKADNHA 317
Query: 251 TRNKVSASLLS-MG 263
K LL G
Sbjct: 318 ALYKQMNHLLEVYG 331
>gi|270289644|ref|ZP_06195946.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum
Weiss]
Length = 398
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 63/324 (19%), Positives = 120/324 (37%), Gaps = 41/324 (12%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL-----KEKKAMLTTPITISKNASE 88
+ ++G ++ E D PAS+TK+ TA ++ + +I+ A +
Sbjct: 1 MHADSGAILKEKNLDQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTSITPQAKQ 60
Query: 89 YPPSNSTFKK------------GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
S ++ + L++ SAND A +A++ C++ F+
Sbjct: 61 QSGYRSPPHWLETDGVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFMH 120
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK-----TDFPQYMHYFQIK 191
+N+ K +G THF + HG+ HYTTARD+AI+ + Y
Sbjct: 121 QLNDFLKEIGCQNTHFNSPHGLHHPDHYTTARDLAIIMKEALKEPLFCQVIRTASYTMES 180
Query: 192 GLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ +TN + + G KTG T ++G NIV +A + ++S+I V G
Sbjct: 181 TNLSPERTLSSTNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAAGY 240
Query: 247 LDR-NTRNKVSAS----LLS----MGF-----YNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ + + L + F + + K I Q + P+
Sbjct: 241 FGPAAQLYQDAIAVCEDLFNEQLLRCFLLPPASQYSVKTKFGPITAPVSQGIYYDFYPSE 300
Query: 293 SEEVCTTQKEIINYNTQMKEAKDK 316
+ + + E +++
Sbjct: 301 GDPLLSLSLESSKIAFPIRQGDLL 324
>gi|270285635|ref|ZP_06195029.1| D-alanyl-D-alanine carboxypeptidase, putative [Chlamydia muridarum
Nigg]
Length = 414
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 63/324 (19%), Positives = 120/324 (37%), Gaps = 41/324 (12%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL-----KEKKAMLTTPITISKNASE 88
+ ++G ++ E D PAS+TK+ TA ++ + +I+ A +
Sbjct: 1 MHADSGAILKEKNLDQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTSITPQAKQ 60
Query: 89 YPPSNSTFKK------------GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
S ++ + L++ SAND A +A++ C++ F+
Sbjct: 61 QSGYRSPPHWLETDGVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFMH 120
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK-----TDFPQYMHYFQIK 191
+N+ K +G THF + HG+ HYTTARD+AI+ + Y
Sbjct: 121 QLNDFLKEIGCQNTHFNSPHGLHHPDHYTTARDLAIIMKEALKEPLFCQVIRTASYTMES 180
Query: 192 GLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ +TN + + G KTG T ++G NIV +A + ++S+I V G
Sbjct: 181 TNLSPERTLSSTNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAAGY 240
Query: 247 LDR-NTRNKVSAS----LLS----MGF-----YNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ + + L + F + + K I Q + P+
Sbjct: 241 FGPAAQLYQDAIAVCEDLFNEQLLRCFLLPPASQYSVKTKFGPITAPVSQGIYYDFYPSE 300
Query: 293 SEEVCTTQKEIINYNTQMKEAKDK 316
+ + + E +++
Sbjct: 301 GDPLLSLSLESSKIAFPIRQGDLL 324
>gi|331091125|ref|ZP_08339967.1| hypothetical protein HMPREF9477_00610 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405347|gb|EGG84883.1| hypothetical protein HMPREF9477_00610 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 321
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 61/250 (24%), Positives = 105/250 (42%), Gaps = 22/250 (8%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L + V+ PAS TK++TA V + L +T+SK A+E
Sbjct: 73 SAAGLFSLDDKEVLYGRNIYKKIYPASTTKILTALVALKY-----GNLDDVVTVSKTATE 127
Query: 89 YPPSN--STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+PP+ K+G +TL L L++ S ND AVAIAE + + ++F + MN + ++G
Sbjct: 128 FPPAASLCGIKEGDKLTLRELLYGLLLPSGNDAAVAIAEHISGSVEEFAKLMNKEAYSIG 187
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYPNT 203
+ THF+N HG+ HYTTA D+ ++ + + K
Sbjct: 188 ATHTHFVNPHGLHDDNHYTTAYDLYLIFNQCIQYDEFIKIVSETKYDLPVTSADGTSRTL 247
Query: 204 NWAVGTFLG-----------ADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNT 251
N + G G KTG T + ++ + S +++++GA ++
Sbjct: 248 NLETTSLYGLGEAEKPEHMTVIGGKTGNTGEAKRCLILLSKDEQGHSYVSIVMGAETKSL 307
Query: 252 RNKVSASLLS 261
+L+
Sbjct: 308 VYTNMNKMLN 317
>gi|146182375|ref|XP_001024481.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila]
gi|146143834|gb|EAS04236.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila SB210]
Length = 583
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 56/279 (20%), Positives = 113/279 (40%), Gaps = 38/279 (13%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT-TPI 80
+ +L+ ++A + ASLTK+MT Y+V ++++ + T
Sbjct: 291 KPPKITSRSWIILNGKNKKLVAGQNENQVREIASLTKMMTCYIVVHYIRKLNLIPEKTYF 350
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL------------- 127
+S +A+ P + + +G +++ + L +++ S ND A +AE+
Sbjct: 351 KVSAHAANQPGTTAGLTEGDVVSIMDLLYGMMLPSGNDAAFVLAENFGVYLYMQTDKFKE 410
Query: 128 -------------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
F++ MN+ ++ L + T+F N HG++ + +T+ D+ +LS
Sbjct: 411 KYGNAQTNKKLKVKNPITYFIKEMNDFAEKLNMQDTYFTNPHGLMHKKNKSTSYDVGLLS 470
Query: 175 WRIKTDFPQYMHYFQIKGL----------EIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
+ + D Q + + NTN + G G+KTG T ++
Sbjct: 471 YYLIHDPLIKQIMAQQTYNANIMTETLQLKNPPTIWKNTNKMLKKT-GFLGLKTGITPSA 529
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
G + + + +LI ++LGA R + LL
Sbjct: 530 GPCLASWYNHENINLIIILLGAKSLEERWVETVQLLEWA 568
>gi|301337031|ref|ZP_07225233.1| D-alanyl-D-alanine carboxypeptidase [Chlamydia muridarum MopnTet14]
Length = 398
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 63/324 (19%), Positives = 120/324 (37%), Gaps = 41/324 (12%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL-----KEKKAMLTTPITISKNASE 88
+ ++G ++ E D PAS+TK+ TA ++ + +I+ A +
Sbjct: 1 MHADSGAILKEKNLDQKIFPASMTKIATALLILRKHPDVLTRFITIRREPLTSITPQAKQ 60
Query: 89 YPPSNSTFKK------------GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
S ++ + L++ SAND A +A++ C++ F+
Sbjct: 61 QSGYRSPPHWLETDGVAIQLKSKEEVSGWDLFHALLISSANDAANVLADACCQSVPAFMH 120
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK-----TDFPQYMHYFQIK 191
+N+ K +G THF + HG+ HYTTARD+AI+ + Y
Sbjct: 121 QLNDFLKEIGCQNTHFNSPHGLHHPDHYTTARDLAIIMKEALKEPLFCQVIRTASYTMES 180
Query: 192 GLEIKGKKYPNTNW-----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ +TN + + G KTG T ++G NIV +A + ++S+I V G
Sbjct: 181 TNLSPERTLSSTNRLLSSSSTYFYPPCLGGKTGTTKSAGKNIVFAAEKNNRSIIVVAAGY 240
Query: 247 LDR-NTRNKVSAS----LLS----MGF-----YNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ + + L + F + + K I Q + P+
Sbjct: 241 FGPAAQLYQDAIAVCEDLFNEQLLRCFLLPPASQYSVKTKFGPITAPVSQGIYYDFYPSE 300
Query: 293 SEEVCTTQKEIINYNTQMKEAKDK 316
+ + + E +++
Sbjct: 301 GDPLLSLSLESSKIAFPIRQGDLL 324
>gi|14719796|pdb|1J9M|A Chain A, K38h Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 105 bits (261), Expect = 9e-21, Method: Composition-based stats.
Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 24/262 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI- 82
T ++ TG + D + S T +MTA VV + L +TI
Sbjct: 4 PTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTHIMTAKVVLAQS---NLNLDAKVTIQ 60
Query: 83 ---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ--- 136
S S + G +T+ L L++ S D A A+A+ + +
Sbjct: 61 KAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKS 120
Query: 137 ---HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN + NLGL THF + G+ +Y+T RD+ ++ + + K
Sbjct: 121 FIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIAS-SAMKNSTFRTVVKTKAY 179
Query: 194 EIK----------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K + NTN + ++ GA G+KTG + + +V +A +G +++I +
Sbjct: 180 TAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTV 239
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
L + R + +++ GF
Sbjct: 240 LASTSIPARESDATKIMNYGFA 261
>gi|330979275|gb|EGH78054.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 266
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/236 (22%), Positives = 93/236 (39%), Gaps = 8/236 (3%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D T V+ + PD AS+TKLMTA VV + ++ I+ +
Sbjct: 1 MVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQPMDEVIPVNISQTPE---MKG 57
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T
Sbjct: 58 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 117
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAV 207
++ G+ + T ++ K + + K + + Y NT+ V
Sbjct: 118 YVEPTGLSVYNVSTARDLTKLVMAARKYPLLSELSTTEQKTVTFRKPTYTLGFSNTDHLV 177
Query: 208 GTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
KTGFT +G +V ++ + VIL A + T ++ +
Sbjct: 178 RKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADASRIRKW 233
>gi|325662481|ref|ZP_08151084.1| hypothetical protein HMPREF0490_01824 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471177|gb|EGC74402.1| hypothetical protein HMPREF0490_01824 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 451
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/326 (19%), Positives = 127/326 (38%), Gaps = 37/326 (11%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ + +TG ++ E D W PAS+TKLMT + + ++E K + +++ ++
Sbjct: 70 IITEIHTGQILWEENKDVSWAPASMTKLMTILLAYDAMEEGKFEKDMQVAVNEKYTDIAG 129
Query: 92 SNSTFKKGSTMTLDNA----LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ M + L+IV S+ +A+ + KFV MN +K +G+
Sbjct: 130 RYALSNNVMQMGATYTVGELIDLIIVPSSAAATYMLADLVEPDPDKFVALMNQKAKEIGM 189
Query: 148 SATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
+ T + N GV + T+ +D A+L +P + + +
Sbjct: 190 THTTYYNCVGVTNDLLYPYAPKNLPADADNVTSPQDYALLCSYFVKTYPDILTHTSSPEI 249
Query: 194 EIKGKKYPNTNWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+K ++ G DG+KTG + +GFN ++A + D L+ +++
Sbjct: 250 VVKEGTPYEEHFKSYQISLEGAKYGLKGTDGLKTGSSGRAGFNYSSTAKRQDTRLVEIVM 309
Query: 245 GALD------RNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCT 298
G D R+ V +++ F RK + ++ + + C
Sbjct: 310 GVSDWTDQTGEELRHLVGNAIMEQAFEKYEYRKVLPKGTHQIGKEKIVTKKDLW---DCV 366
Query: 299 TQKEIINYNTQM-KEAKDKESHFIDF 323
++E + + + K D E ++
Sbjct: 367 PKEEKVKFKMEDGKVFVDLERQYLPG 392
>gi|259046993|ref|ZP_05737394.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
ATCC 49175]
gi|259036312|gb|EEW37567.1| serine-type D-Ala-D-Ala carboxypeptidase [Granulicatella adiacens
ATCC 49175]
Length = 471
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 73/379 (19%), Positives = 143/379 (37%), Gaps = 57/379 (15%)
Query: 1 MRQFLVIIAMAMLSNI-----FPFLSIAETN---------------KLPYYTLLDTNTGH 40
M++ + ++ + L + ++ E+ ++ G
Sbjct: 20 MKKIIKLVCVLFLLMMGVIGTISTVNAQESILKVVKDEGYEISSSDTPKASLVVSIANGE 79
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTF 96
++ + PD +PASL+KLMT ++V+ +KE K L+ + + SN
Sbjct: 80 ILWQENPDRAVDPASLSKLMTIFIVYDAIKEGKISLSDKVVPTATDEAISKITALSNVPL 139
Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
G ++ +K+ ++ S+N + ++ + +FV MN +K LG++ T F A
Sbjct: 140 TAGVEYPVEELVKMALLPSSNAATILLSHLVNDNSDEFVDLMNQKAKELGMTNTKFEGAT 199
Query: 157 G---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIK 196
G + + TTARD+A + + P+ Y +
Sbjct: 200 GAVAEDFQGHYTVKRHSMNQPNQTTARDLAKMVIALYKSHPEITQYTRNSTLTVMSGTPY 259
Query: 197 GKKYPNTNWAVG----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG------A 246
+ NTN +V + G G+KTG + GFN + + L+ ++LG A
Sbjct: 260 AQTIKNTNHSVQGDLLAYPGIIGLKTGTSERDGFNYIGIYQKDGVELLDIVLGVSEWTSA 319
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
R+K+ +LLS + N I+ Q + + + +V T + + Y
Sbjct: 320 AGEYNRHKIGNALLSYVLKQYEAQTLFNPGIQTIQGQKVK---LDHAVKVFTEKGKTATY 376
Query: 307 NTQMKEAKDKESHFIDFEK 325
+ K +E+
Sbjct: 377 QIEGNHLKVATPQGTIYEQ 395
>gi|7766855|pdb|1ESI|A Chain A, R248l Mutant Of Streptomyces K15 Dd-Transpeptidase
Length = 262
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 24/262 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI- 82
T ++ TG + D + S TK+MTA VV + L +TI
Sbjct: 4 PTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQS---NLNLDAKVTIQ 60
Query: 83 ---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ--- 136
S S + G +T+ L L++ S D A A+A+ + +
Sbjct: 61 KAYSDYVVANNASQAHLIVGDKVTVRQLLYGLMLPSGCDAAYALADKYGSGSTRAARVKS 120
Query: 137 ---HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
MN + NLGL THF + G+ +Y+T RD+ ++ + + K
Sbjct: 121 FIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKIAS-SAMKNSTFRTVVKTKAY 179
Query: 194 EIK----------GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K + NTN + ++ GA G+KTG + + +V +A +G +++I +
Sbjct: 180 TAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTV 239
Query: 244 LGALDRNTRNKVSASLLSMGFY 265
L + + +++ GF
Sbjct: 240 LASTSIPALESDATKIMNYGFA 261
>gi|167590610|ref|ZP_02382998.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ubonensis Bu]
Length = 356
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/255 (20%), Positives = 94/255 (36%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ A +LD +TG + AS++KLMTA V +
Sbjct: 100 LLASCGYSPRAANALHSRAAYVLDVSTGTPLLARNARTVRPIASISKLMTAVVARDADRP 159
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
ML S + ++S GST++ + ++ ++ S N A A++
Sbjct: 160 LDGML---RVSSHDRDTIKFTHSRLSVGSTLSRRDMYRIALMSSENRAAAALSRDYPGGR 216
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM---HYF 188
FV MN ++ LG+ T F G+ + +TA ++A+L D
Sbjct: 217 PAFVAAMNREARRLGMRRTRFREPTGL-SPRNVSTAEELALLVDAAARDPLIRRFSTAKS 275
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
Y N++ V KTGF +G +V A+ + V+LG+
Sbjct: 276 GTVHPGDGKLLYVNSDPLVRYGQWPIQLQKTGFINEAGHGVVMRALVRGRPQTIVLLGSP 335
Query: 248 DRNTRNKVSASLLSM 262
R+ + +
Sbjct: 336 TRDGVTSDALRIRRW 350
>gi|242315730|ref|ZP_04814746.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106b]
gi|242138969|gb|EES25371.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106b]
Length = 428
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 10/256 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 172 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSMVALDTRAP 231
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 232 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGG 287
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ + +TARD++ L
Sbjct: 288 RPAFVAAMNRKARTLGMKRTHFVNATGL-SPRNVSTARDLSRLVAAASRYPRIKTFSTAT 346
Query: 191 KGLEI---KGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+Y N++ KTGF +G +V + + V+LGA
Sbjct: 347 SKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGA 406
Query: 247 LDRNTRNKVSASLLSM 262
+ +A +
Sbjct: 407 PGPHDHVADAAKIRRW 422
>gi|167901817|ref|ZP_02489022.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei NCTC 13177]
Length = 378
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 10/256 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 122 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSMVALDTRAP 181
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 182 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGG 237
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ + +TARD++ L
Sbjct: 238 RPAFVAAMNRKARTLGMKRTHFVNATGL-SPRNVSTARDLSRLVAAASRYPRIKTFSTAT 296
Query: 191 KGLEI---KGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+Y N++ KTGF +G +V + + V+LGA
Sbjct: 297 SKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGA 356
Query: 247 LDRNTRNKVSASLLSM 262
+ +A +
Sbjct: 357 PGPHDHVADAAKIRRW 372
>gi|167718649|ref|ZP_02401885.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei DM98]
Length = 378
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 10/256 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 122 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSMVALDTRAP 181
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 182 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGG 237
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ + +TARD++ L
Sbjct: 238 RPAFVAAMNRKARTLGMKRTHFVNATGL-SPRNVSTARDLSRLVAAASRYPRIKTFSTAT 296
Query: 191 KGLEI---KGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+Y N++ KTGF +G +V + + V+LGA
Sbjct: 297 SKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGA 356
Query: 247 LDRNTRNKVSASLLSM 262
+ +A +
Sbjct: 357 PGPHDHVADAAKIRRW 372
>gi|254190742|ref|ZP_04897249.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pasteur 52237]
gi|157938417|gb|EDO94087.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pasteur 52237]
Length = 470
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 10/256 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 214 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSMVALDTRAP 273
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 274 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGG 329
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ + +TARD++ L
Sbjct: 330 RPAFVAAMNRKARTLGMKRTHFVNATGL-SPRNVSTARDLSRLVAAASRYPRIKTFSTAT 388
Query: 191 KGLEI---KGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+Y N++ KTGF +G +V + + V+LGA
Sbjct: 389 SKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGA 448
Query: 247 LDRNTRNKVSASLLSM 262
+ +A +
Sbjct: 449 PGPHDHVADAAKIRRW 464
>gi|134281097|ref|ZP_01767806.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 305]
gi|134247403|gb|EBA47488.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 305]
Length = 478
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 10/256 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 222 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSMVALDTRAP 281
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 282 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGG 337
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ + +TARD++ L
Sbjct: 338 RPAFVAAMNRKARTLGMKRTHFVNATGL-SPRNVSTARDLSRLVAAASRYPRIKTFSTAT 396
Query: 191 KGLEI---KGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+Y N++ KTGF +G +V + + V+LGA
Sbjct: 397 SKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGA 456
Query: 247 LDRNTRNKVSASLLSM 262
+ +A +
Sbjct: 457 PGPHDHVADAAKIRRW 472
>gi|76810222|ref|YP_332685.1| murein-DD-endopeptidase [Burkholderia pseudomallei 1710b]
gi|76579675|gb|ABA49150.1| murein-DD-endopeptidase [Burkholderia pseudomallei 1710b]
Length = 452
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 10/256 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 196 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSMVALDTRAP 255
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 256 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGG 311
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ + +TARD++ L
Sbjct: 312 RPAFVAAMNRKARTLGMKRTHFVNATGL-SPRNVSTARDLSRLVAAASRYPRIKTFSTAT 370
Query: 191 KGLEI---KGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+Y N++ KTGF +G +V + + V+LGA
Sbjct: 371 SKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGA 430
Query: 247 LDRNTRNKVSASLLSM 262
+ +A +
Sbjct: 431 PGPHDHVADAAKIRRW 446
>gi|53718694|ref|YP_107680.1| murein-DD-endopeptidase [Burkholderia pseudomallei K96243]
gi|126441783|ref|YP_001058168.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 668]
gi|167814810|ref|ZP_02446490.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 91]
gi|254260216|ref|ZP_04951270.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1710a]
gi|52209108|emb|CAH35050.1| murein-DD-endopeptidase [Burkholderia pseudomallei K96243]
gi|126221276|gb|ABN84782.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
668]
gi|254218905|gb|EET08289.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1710a]
Length = 378
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 10/256 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 122 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSMVALDTRAP 181
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 182 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGG 237
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ + +TARD++ L
Sbjct: 238 RPAFVAAMNRKARTLGMKRTHFVNATGL-SPRNVSTARDLSRLVAAASRYPRIKTFSTAT 296
Query: 191 KGLEI---KGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+Y N++ KTGF +G +V + + V+LGA
Sbjct: 297 SKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGA 356
Query: 247 LDRNTRNKVSASLLSM 262
+ +A +
Sbjct: 357 PGPHDHVADAAKIRRW 372
>gi|53724420|ref|YP_104522.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei ATCC 23344]
gi|121598323|ref|YP_992318.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei SAVP1]
gi|124386019|ref|YP_001028989.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei NCTC 10229]
gi|126449096|ref|YP_001081092.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei NCTC 10247]
gi|126451732|ref|YP_001065404.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106a]
gi|166999947|ref|ZP_02265776.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei PRL-20]
gi|167744606|ref|ZP_02417380.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 14]
gi|167823267|ref|ZP_02454738.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 9]
gi|167844811|ref|ZP_02470319.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei B7210]
gi|167910041|ref|ZP_02497132.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 112]
gi|217419635|ref|ZP_03451141.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
576]
gi|226194446|ref|ZP_03790044.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pakistan 9]
gi|237811386|ref|YP_002895837.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei MSHR346]
gi|238563378|ref|ZP_00438972.2| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei GB8 horse 4]
gi|254178365|ref|ZP_04885020.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei ATCC 10399]
gi|254181346|ref|ZP_04887943.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1655]
gi|254197054|ref|ZP_04903478.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei S13]
gi|254201603|ref|ZP_04907967.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei FMH]
gi|254206936|ref|ZP_04913287.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei JHU]
gi|254357915|ref|ZP_04974188.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei 2002721280]
gi|52427843|gb|AAU48436.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei ATCC 23344]
gi|121227133|gb|ABM49651.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei SAVP1]
gi|124294039|gb|ABN03308.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
10229]
gi|126225374|gb|ABN88914.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1106a]
gi|126241966|gb|ABO05059.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia mallei NCTC
10247]
gi|147747497|gb|EDK54573.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei FMH]
gi|147752478|gb|EDK59544.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei JHU]
gi|148027042|gb|EDK85063.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei 2002721280]
gi|160699404|gb|EDP89374.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei ATCC 10399]
gi|169653797|gb|EDS86490.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei S13]
gi|184211884|gb|EDU08927.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei 1655]
gi|217396939|gb|EEC36955.1| serine-type D-Ala-D-Ala carboxypeptidase [Burkholderia pseudomallei
576]
gi|225933531|gb|EEH29520.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei Pakistan 9]
gi|237505712|gb|ACQ98030.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
pseudomallei MSHR346]
gi|238520825|gb|EEP84282.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei GB8 horse 4]
gi|243064065|gb|EES46251.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
mallei PRL-20]
Length = 378
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 10/256 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 122 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANRVMPIASVTKLMTSMVALDTRAP 181
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 182 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGG 237
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ + +TARD++ L
Sbjct: 238 RPAFVAAMNRKARTLGMKRTHFVNATGL-SPRNVSTARDLSRLVAAASRYPRIKTFSTAT 296
Query: 191 KGLEI---KGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+Y N++ KTGF +G +V + + V+LGA
Sbjct: 297 SKTVFPGRGQLRYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGA 356
Query: 247 LDRNTRNKVSASLLSM 262
+ +A +
Sbjct: 357 PGPHDHVADAAKIRRW 372
>gi|262067346|ref|ZP_06026958.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium
periodonticum ATCC 33693]
gi|291378909|gb|EFE86427.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium
periodonticum ATCC 33693]
Length = 424
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 7/237 (2%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
L+ G+VI PD + AS+TK+M+ V F + L + ISK +Y
Sbjct: 171 AVLIGDLNGNVIFSKNPDTMYPLASVTKVMSLLVTFDEINAGNIGLHDSVRISKTPLKYG 230
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLG-LS 148
S K+G L++ +K V SAN+ A+AE + + + FV MN K LG +
Sbjct: 231 GSGIPLKEGQIFILEDLIKASAVYSANNATYAMAEYVGEGSIFNFVAKMNRKLKQLGLQN 290
Query: 149 ATHFMNAHGVVQHGHYTTARDMA----ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ G+ + + +Y+ IK +I K N
Sbjct: 291 DIKYYTPAGLPTRNTKMPMDEGTPRGIYKLSIEALKYHKYIEIAGIKNTKIHNDKISIRN 350
Query: 205 WAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
G G+KTGF + +NI + LI V++G TR+ + +++
Sbjct: 351 RNHLIGEDGVYGIKTGFHKEAKYNITVAVKFEGIDLIIVVMGGETYKTRDDLVRTII 407
>gi|154267921|gb|ABS72056.1| D,D carboxypeptidase [Ruminococcus gauvreauii]
Length = 356
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/260 (20%), Positives = 100/260 (38%), Gaps = 29/260 (11%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+++ +T V+ + PAS K++ A + + +
Sbjct: 98 NIAAANAIVMNKDTNEVLYQKKSTAKIAPASTAKMIMALTALDYC-----SPEDEMKVGA 152
Query: 85 NASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAES------------LCKT 130
+S KG T+T+ L L++ S ND A +A + +
Sbjct: 153 EIEMIQSDSSTAWLMKGDTLTVRQLLIALMLPSGNDAAYTLAVNTGKKIAGDKSLTHQQA 212
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM----H 186
+ F+ +N + NLG + + F+ G G YTTA D+AI++ + +
Sbjct: 213 IEVFMDKVNEKAVNLGATNSKFVAPDGYDAEGQYTTAYDLAIIAKACLDNPIISEIVASY 272
Query: 187 YFQIKGLEIKGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
K + Y N+N + G+KTG + G IV++A+ ++ I
Sbjct: 273 SSYEKWPNGREVTYSNSNELLDPNSPYYRPEVIGLKTGTSSLGGACIVSAAVIDGETYIC 332
Query: 242 VILGALDRNTRNKVSASLLS 261
V++G+ + +R + S +L
Sbjct: 333 VVMGS-TKESRFQDSVDILD 351
>gi|167618346|ref|ZP_02386977.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis Bt4]
Length = 355
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/255 (20%), Positives = 92/255 (36%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 99 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANCVVPIASVTKLMTSMVALDTRAP 158
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS + + L + ++ S N A A++
Sbjct: 159 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLPRRDMLHIALMSSENRAAAALSRDYPGG 214
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ T +++ + +
Sbjct: 215 RPAFVAAMNRKARTLGMKHTHFVNATGLSPRNVSTARDLSRLVAAASRYPHIKSFSTDTS 274
Query: 191 KGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
K + + N KTGF +G +V + + V+LGA
Sbjct: 275 KTVFPGRGQLHYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAP 334
Query: 248 DRNTRNKVSASLLSM 262
+ +A +
Sbjct: 335 GPHDHVADAAKIRRW 349
>gi|83719868|ref|YP_441464.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis E264]
gi|257139857|ref|ZP_05588119.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis E264]
gi|83653693|gb|ABC37756.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis E264]
Length = 383
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/255 (20%), Positives = 92/255 (36%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L+ + + ++D TG V+ E + AS+TKLMT+ V
Sbjct: 127 LLARCGYTAASRHLLRSRAIYVVDERTGTVLIERNANCVVPIASVTKLMTSMVALDTRAP 186
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS + + L + ++ S N A A++
Sbjct: 187 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLPRRDMLHIALMSSENRAAAALSRDYPGG 242
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF+NA G+ T +++ + +
Sbjct: 243 RPAFVAAMNRKARTLGMKHTHFVNATGLSPRNVSTARDLSRLVAAASRYPHIKSFSTDTS 302
Query: 191 KGLEIKGKKYPNTNWA---VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
K + + N KTGF +G +V + + V+LGA
Sbjct: 303 KTVFPGRGQLHYVNSDALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGAP 362
Query: 248 DRNTRNKVSASLLSM 262
+ +A +
Sbjct: 363 GPHDHVADAAKIRRW 377
>gi|295094843|emb|CBK83934.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus sp. ART55/1]
Length = 321
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/272 (20%), Positives = 100/272 (36%), Gaps = 28/272 (10%)
Query: 18 PFLSIAETNKL------PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++ E L+D T I + PAS+TK+MT +V +++
Sbjct: 51 AVIAQGEEIDAANYNGCYAAMLVDETTKDTIVAHNVHGKIYPASMTKIMTGILVMESIEK 110
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCK 129
L +T+++ + ++T+ N L L++ S ND V +AE +
Sbjct: 111 GDISLDDVVTLNRKVTFDDWDAMASDLVGGCSLTVKNLLYGLMITSYNDCGVILAELIAG 170
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR-------IKTDFP 182
+E F MN +K +G + THF+N HG+ HYTTA D+ ++ D
Sbjct: 171 SESAFCDMMNEKAKEIGATNTHFVNCHGLHDDDHYTTAYDLYLIIKEFSKHDLAYVIDSL 230
Query: 183 QYMHYFQI---------KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ N+ G +G+ KTG T + ++
Sbjct: 231 DTYDFTYTDADGNEQVVTIEPTNEFLTGEVNFPDGYSIGSW--KTGTTEEALNCLIMELK 288
Query: 234 QG--DQSLIAVILGALDRNTRNKVSASLLSMG 263
+ IA++ GA + L++
Sbjct: 289 NDSTGEEYIALVAGADGKEALYSAMTELINKA 320
>gi|118398512|ref|XP_001031584.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila]
gi|89285915|gb|EAR83921.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila SB210]
Length = 617
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 63/280 (22%), Positives = 115/280 (41%), Gaps = 36/280 (12%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML-T 77
F + ++ + +L+ N G ++ N ASLTK+MT YV ++
Sbjct: 322 FTKLPQSVSAESWAVLNANNGQILFGNNHFIIRQMASLTKIMTLYVSLKVIQALDISPFR 381
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI-------------- 123
T + +SK A+ +++ +G ++L + + +++ S ND A A+
Sbjct: 382 TYVEVSKKAASMNGTSARLIEGDRLSLWDLMHGMMLPSGNDAATALAENLGVFLYYQSEE 441
Query: 124 ---------------AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ ++ F+ MN + NL L+ THF N G+V + + +TA
Sbjct: 442 YKLQYQQNPQQFQNEKFRVKNSQGYFINQMNKYAHNLQLNNTHFANPTGLVNNFNRSTAA 501
Query: 169 DMAILSWRIKTDFP------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
D+A LS+ + + H+ QI K + N G G+KTG T
Sbjct: 502 DLAKLSYHLIKEEQVKKIVECKYHFAQIYMNNNKKRSVIFENTNKLLSHGYSGLKTGITT 561
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
A+G + A +LI ++L + R + +L+S
Sbjct: 562 AAGPCLSAWYKDDQVNLIIILLNSSSMEQRWVDTQNLVSC 601
>gi|262038951|ref|ZP_06012291.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii
F0264]
gi|261747032|gb|EEY34531.1| serine-type D-Ala-D-Ala carboxypeptidase [Leptotrichia goodfellowii
F0264]
Length = 541
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 63/303 (20%), Positives = 114/303 (37%), Gaps = 15/303 (4%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98
G +I + ASLTK+M V + + L + + + S K
Sbjct: 205 GKIIKKELETQQHPIASLTKVMNILVALDEVDKGNVSLDDKVCFTPQNANVGGSWLNVKV 264
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
G L + L+ I+ SAN+ A +A + + FV+ MN +K LG++ T F G
Sbjct: 265 GDCYLLRDLLRSEIIYSANNSAYLVAYHVGKGNIEYFVKLMNQKAKELGMNNTEFHTPAG 324
Query: 158 VVQH-----GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK----GKKYPNTNWAVG 208
+ +TA DM ++ + D + + + + Y + N +G
Sbjct: 325 LPTTMTGKGMDVSTAYDMFLMGKKAIEDKRIREWASEPELVLVNPAGEQVIYKSRNHLLG 384
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G G+KTGF +G+NI+ + G+ +I+V+LG N R K L F
Sbjct: 385 QY-GIYGLKTGFHVQAGYNIIVTGKMGNIEIISVVLGHKTHNQRTKD--QLEE--FSQIK 439
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+R K + + + + + P + + +T K +
Sbjct: 440 NRLKKIHTMGEEIGEFKIKDSPKRKIKGVLAENVYQLDDTNYDFKTVGIDAKAKINKGDV 499
Query: 329 LKN 331
+
Sbjct: 500 IGK 502
>gi|322390800|ref|ZP_08064310.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis ATCC 903]
gi|321142470|gb|EFX37938.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
parasanguinis ATCC 903]
Length = 440
Score = 105 bits (260), Expect = 1e-20, Method: Composition-based stats.
Identities = 76/337 (22%), Positives = 135/337 (40%), Gaps = 36/337 (10%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
K ++D NTG ++ + D + S+ KLM+AYVVF LKE K T +T ++
Sbjct: 61 KPKADIVIDANTGAILYGDNIDTVRDSGSMAKLMSAYVVFRALKEGKIKYDTVVTATEAD 120
Query: 87 SEYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNT 141
+ NS G + +K+L V S++ + +A + KF+ MN
Sbjct: 121 QAISENNLLSNSPIVAGVDYKVSELIKMLFVPSSSAAVIMLANAVTDNDPDKFLDLMNQY 180
Query: 142 SKNLGLSATHFMNAHGVV---------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
++ +G+S T + N +G + + TARDM+IL++ I D P+ +
Sbjct: 181 AQEMGMSHTKWHNPNGAMISVLQGYYNPQRYDVNANNEITARDMSILAYHIVNDLPEMLE 240
Query: 187 YFQIKGLEIKGKK-----YPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQ 237
Y + I Y N N ++ G DG+KTG + + +N A+ +G Q
Sbjct: 241 YTKQAHTTIMEGTPYEQSYDNYNTSLEGGKFALKGTDGLKTGSSPTADYNYTATTKRGKQ 300
Query: 238 SLIAVILGALDRNT------RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+I VILG + + RN++ +L F + +K ++ + +
Sbjct: 301 RIIEVILGVGNYDVEIAESYRNQIGNTLAEKMFADYQYKKILSAGD-HTIDGKTIHLKQD 359
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
V K + ++ K +
Sbjct: 360 FYATVKKGTKPALKLEDNRLVVQNGLQQVSPSIKAGV 396
>gi|225378096|ref|ZP_03755317.1| hypothetical protein ROSEINA2194_03756 [Roseburia inulinivorans DSM
16841]
gi|225210097|gb|EEG92451.1| hypothetical protein ROSEINA2194_03756 [Roseburia inulinivorans DSM
16841]
Length = 328
Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/256 (24%), Positives = 107/256 (41%), Gaps = 23/256 (8%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ T V PAS TK++TAY+ + L +T+S+NA+
Sbjct: 79 AEGAGTFNLATNTVTYAQNIYEKLYPASTTKILTAYIALKY-----GNLEDYVTVSENAA 133
Query: 88 EY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S K G + L + L +++KS ND A+AIAE + + + F MN + +
Sbjct: 134 NQASDSSVCGLKAGDVVQLKDLLYGMMLKSGNDAAIAIAEHIGGSVEGFADMMNQEALAM 193
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK------- 198
G + +HF+N +G+ HYT+ D+ ++ D + +
Sbjct: 194 GATRSHFVNPNGLPDENHYTSVYDLYLIFQNAVQDQTFLDIISTMSYDVVYTDVNGAGVE 253
Query: 199 -KYPNTNWAVGTFL------GADGMKTGFTCASGFNIV-ASAIQGDQSLIAVILGALDRN 250
+ NTN + G KTG T A+G+ +V S Q +++++L A ++
Sbjct: 254 KTWENTNQYLTGKEKAPEGITVVGGKTGTTGAAGYCLVLYSYNASGQPIVSIVLKADGKS 313
Query: 251 TRNKVSASLLSMGFYN 266
+ +LS GF N
Sbjct: 314 NLYLLMNEMLS-GFAN 328
>gi|210614029|ref|ZP_03290008.1| hypothetical protein CLONEX_02221 [Clostridium nexile DSM 1787]
gi|210150881|gb|EEA81889.1| hypothetical protein CLONEX_02221 [Clostridium nexile DSM 1787]
Length = 325
Score = 105 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 96/235 (40%), Gaps = 11/235 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
++ + VI + D PASLTK+MT + + +A +T I
Sbjct: 69 QLHSSAGIVISLDDSKVIFQFQQDEKIFPASLTKIMTCILAIENINNLEATITLEPEIFD 128
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
S + F G + + L I+ S + ++A+AE + +E+ FV+ MN +K+
Sbjct: 129 ELYAQNASMAGFLPGENAKIIDILYGNILPSGGECSIALAEYVAGSEQAFVELMNEKAKD 188
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-------QYMHYFQIKGLEIKG 197
LG++ THFMNA G+ HYTT +D+ IL + +
Sbjct: 189 LGMNNTHFMNATGLHNESHYTTVKDIGILLQYALKNQTFNDIFQSKSYFVAPTDQHLSGF 248
Query: 198 KKYPNTNW---AVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
Y + G G KTG+T +G + + AI + IA+ + A
Sbjct: 249 TFYSSMFKLRDQWELDEGEIVGGKTGYTDEAGLCLASEAIVNGRKYIAITVNAEG 303
>gi|330900670|gb|EGH32089.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 266
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 8/236 (3%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++D T V+ + PD AS+TKLMTA VV + ++ I+ +
Sbjct: 1 MVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQPMDEVIPVNISQTPE---MKG 57
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S K GS M + L + ++ S N A ++A S F+ MN +K LG+ T
Sbjct: 58 VFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTA 117
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAV 207
++ G+ + T ++ K + + K + + Y NT+ V
Sbjct: 118 YVEPTGLSVYNVSTARDLTKLVMAARKYPLLSELSTTEQKTVTFRKPTYTLGFSNTDHLV 177
Query: 208 GTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
KTGFT +G +V ++ + VIL A + T + +
Sbjct: 178 RKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVILDAFGKYTHFADAGRIRKW 233
>gi|5353565|gb|AAD42182.1|AF130997_3 D,D carboxypeptidase [Enterococcus faecium]
Length = 356
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 51/260 (19%), Positives = 99/260 (38%), Gaps = 29/260 (11%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+++ +T V+ + PAS K++ A + + +
Sbjct: 98 NITAANAIVMNKDTNEVLYQKKSTAKIAPASTAKMIMALTALDYC-----SPEDEMKVGA 152
Query: 85 NASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESL------------CKT 130
+S KG T+T+ L L++ S ND A +A + +
Sbjct: 153 EIGMIQSDSSTAWLMKGDTLTVRQLLIALMLPSGNDAAYTLAVNTGKAIAGDNSLTSQQA 212
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM----H 186
+ F+ +N + LG + + F+ G G YTTA D+AI++ + +
Sbjct: 213 IEVFMDKVNEKAVALGATNSKFVAPDGYDAEGQYTTAYDLAIIAKACLDNPIISEIVASY 272
Query: 187 YFQIKGLEIKGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
K + Y N+N + G+KTG + G IV++A+ ++ I
Sbjct: 273 SSYEKWSNGREVTYNNSNELLDPNSPYYRPEVIGLKTGTSSLGGACIVSAAVMDGETYIC 332
Query: 242 VILGALDRNTRNKVSASLLS 261
V++G+ + +R + S +L
Sbjct: 333 VVMGS-TKESRFQDSVDILD 351
>gi|315651403|ref|ZP_07904428.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
3986]
gi|315486362|gb|EFU76719.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium saburreum DSM
3986]
Length = 326
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 65/265 (24%), Positives = 105/265 (39%), Gaps = 23/265 (8%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L+ A+ ++ + G ++A PAS TK+MTA + +
Sbjct: 64 LALPSDDEVNADDISAQAAIIV-KDDGSLLASKAATKKMYPASTTKVMTALLALKYS--- 119
Query: 73 KAMLTTPITISKN--ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L+ + + E S + G +TLD L L++ S ND A AIA + +
Sbjct: 120 --NLSDEVVVPDESVIDEAGASLAGIHPGDKLTLDELLYGLMLPSGNDAANAIAVHIGGS 177
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD---------- 180
+ FV+ MN +K +G T+F+NA+G+ HYTTA D+ ++ D
Sbjct: 178 VESFVKMMNEEAKRIGAVDTNFVNANGLSDDNHYTTAYDLYLILNEAMKDSRFVNYAGAA 237
Query: 181 ----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-G 235
QI G KY + + + KTG T A+G +V +
Sbjct: 238 SYSVTYTAADGSQITKNWKNGNKYITGQEVIPKGVSVEAGKTGTTFAAGSCLVLAGKNAD 297
Query: 236 DQSLIAVILGALDRNTRNKVSASLL 260
I+V+L A +R + LL
Sbjct: 298 GNRYISVVLKAQNRAGLYDNMSKLL 322
>gi|30261982|ref|NP_844359.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Ames]
gi|47527245|ref|YP_018594.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|49184822|ref|YP_028074.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Sterne]
gi|65319265|ref|ZP_00392224.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A2012]
gi|165870241|ref|ZP_02214897.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0488]
gi|167632885|ref|ZP_02391211.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0442]
gi|167638465|ref|ZP_02396742.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0193]
gi|170686389|ref|ZP_02877610.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0465]
gi|177650876|ref|ZP_02933773.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0174]
gi|190566291|ref|ZP_03019209.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis Tsiankovskii-I]
gi|227815230|ref|YP_002815239.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. CDC 684]
gi|229601545|ref|YP_002866353.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0248]
gi|254684545|ref|ZP_05148405.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. CNEVA-9066]
gi|254721303|ref|ZP_05183093.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A1055]
gi|254734848|ref|ZP_05192560.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Western North America USA6153]
gi|254741249|ref|ZP_05198937.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Kruger B]
gi|254755503|ref|ZP_05207537.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Vollum]
gi|254760039|ref|ZP_05212063.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Australia 94]
gi|30256608|gb|AAP25845.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
Ames]
gi|47502393|gb|AAT31069.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. 'Ames Ancestor']
gi|49178749|gb|AAT54125.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Sterne]
gi|164714129|gb|EDR19650.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0488]
gi|167513766|gb|EDR89135.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0193]
gi|167531697|gb|EDR94362.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0442]
gi|170669465|gb|EDT20207.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0465]
gi|172083337|gb|EDT68398.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0174]
gi|190562426|gb|EDV16393.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis Tsiankovskii-I]
gi|227006117|gb|ACP15860.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus anthracis str.
CDC 684]
gi|229265953|gb|ACQ47590.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. A0248]
Length = 285
Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats.
Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 44/261 (16%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ P I ++D + G +I ++ + + PA
Sbjct: 53 VVPPKYIPPEVDAKAAMIIDASNGDIIYQHNENEAFAPA--------------------- 91
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
++ + + T+T+ + L+++SAN+ AVA+AE + KTEK FV
Sbjct: 92 -----------AQTEGARIPVQVNDTLTVKDLFHALMIESANNSAVALAEHMAKTEKDFV 140
Query: 136 QHMNNTSKNLGLSAT-HFMNAHGV---VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q MN +K L +S F NA G+ TA D+A L++ + D+P+ + ++
Sbjct: 141 QLMNAKAKQLKMSDYAKFANASGLQEPDGSETKMTAADVANLAYHLIKDYPEILEVTHLR 200
Query: 192 GLEIKGKKYP--------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ N N G DG+KTGFT ++G+ +A QGD +I V+
Sbjct: 201 QSQLAFNNINVISTNDMLNKNNKALYIEGIDGLKTGFTDSAGYCFTGTAKQGDTRIITVV 260
Query: 244 LGALDRNTRNKVSASLLSMGF 264
+G + R + L++ F
Sbjct: 261 MGTKGKTKRFTETNKLMTYAF 281
>gi|284992776|ref|YP_003411330.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Geodermatophilus obscurus DSM 43160]
gi|284066021|gb|ADB76959.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Geodermatophilus obscurus DSM 43160]
Length = 439
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/254 (20%), Positives = 89/254 (35%), Gaps = 14/254 (5%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + P + + D +G V+A P + PAS +
Sbjct: 79 TAPLPDEVVAPGWLVADAGSGAVLAARDPHGRYYPASTL-----KTLTLLTLLPVLDPAE 133
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ + S G + + L+++S ND A A V+ M
Sbjct: 134 VVEGTVEDEAVEGSRVGMVAGGRYPVPLLYQALVMQSGNDAANA-LARAAGGTDVTVRAM 192
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF------PQYMHYFQIKG 192
N + ++G T G+ G ++ D+A++ R+ D +
Sbjct: 193 NEVAGSIGAFDTVAGTPSGLDVAGQSSSPYDLALVFRRLVEDPDTVALLQTRLAEMPAVE 252
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
G ++ N N GT G G KTGFT A+ V +A + + L+ ++G R
Sbjct: 253 GRHPGFQFHNQNPLAGT-PGNLGGKTGFTDAARHTFVTAAERDGRRLVVSVMGTESVPLR 311
Query: 253 NKV-SASLLSMGFY 265
+ASLL GF
Sbjct: 312 AADQAASLLDWGFA 325
>gi|319779426|ref|YP_004130339.1| Murein-DD-endopeptidase [Taylorella equigenitalis MCE9]
gi|317109450|gb|ADU92196.1| Murein-DD-endopeptidase [Taylorella equigenitalis MCE9]
Length = 389
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 96/239 (40%), Gaps = 11/239 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-K 84
++ + + + + AS++KLMTAYVV + L ITIS +
Sbjct: 143 INSEIALVMSLDDRQIQYQKNINVVQPIASISKLMTAYVVIKSGQP----LDEIITISEE 198
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ + S G+ +T AL L ++ S N A A+ + FV+ MN T+++
Sbjct: 199 DVDHLKGTGSRLTIGTQLTRKEALLLALMSSENRAANALGRHYPGGLEAFVKEMNATARS 258
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAI----LSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
LG++ T ++ G+ + ++A+D+A + + + K + Y
Sbjct: 259 LGMTRTRYVEPTGL-SPMNVSSAQDLATLLAAVYKEPLIHQLSTSDGYSVTTNGGKVQDY 317
Query: 201 PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
N+N + KTG+ +G IV + + V++ A TR +
Sbjct: 318 KNSNRLIRNNEWDIHISKTGYIKEAGRCIVMITKIKGKDMAVVLMNAKGGTTRFSDAIR 376
>gi|260219749|emb|CBA26593.1| hypothetical protein Csp_H39370 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 364
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 68/132 (51%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
M + Y LLD + ++A D P PASLTKLMTAY+VF L+
Sbjct: 1 MSFAVAAQAPRPPEVAARAYLLLDVTSNQILASKDMDMPVEPASLTKLMTAYLVFDALRS 60
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
KK L +S+ A + P S + +++ +K +IV+S ND +A+AE + +
Sbjct: 61 KKIDLKQTFPVSERAWKMPGSRMFIDPKMQVPVEDLIKGMIVQSGNDATMALAEGVGGSL 120
Query: 132 KKFVQHMNNTSK 143
++FVQ MN+ +K
Sbjct: 121 ERFVQMMNDQAK 132
>gi|46205327|ref|ZP_00209803.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
magnetotacticum MS-1]
Length = 261
Score = 104 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 72/130 (55%)
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN T+ +G+ + + N +G+ + +T+ARDMAIL+ + DFP F I ++
Sbjct: 1 MMNETAHKIGMRESRWYNPNGLPEPRQWTSARDMAILARALMRDFPDQQGLFSISAIQYG 60
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
N N +G + GADGMKTGF C+ GFN+VA+A + + +I V++G R+ +
Sbjct: 61 KAVMANHNGLLGRYPGADGMKTGFICSGGFNVVATATRNGRRIITVVMGQPSARERDIKA 120
Query: 257 ASLLSMGFYN 266
A L GF
Sbjct: 121 ADLFDYGFSQ 130
>gi|145594991|ref|YP_001159288.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora tropica
CNB-440]
gi|145304328|gb|ABP54910.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora tropica
CNB-440]
Length = 386
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 54/283 (19%), Positives = 98/283 (34%), Gaps = 8/283 (2%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
A + + D +G V+ P PAS+ KL+ A + L
Sbjct: 56 LVTPAGTPSAPAVTATSWIVADLGSGQVLGGCGPHEHRTPASVQKLLLAVALLPRLDPTT 115
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
+ T + T+ LL + +A
Sbjct: 116 VVEVTRDDLHDLDPASSLMGVVEGGRYTVEELWLGLLLESGNDAANVLARLGGGGAGRPG 175
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
VQ MN+ + L S TH + G+ G YT+A D+A+++ + + Y +
Sbjct: 176 GVQVMNDEAGRLRASQTHAVTPSGLDGAGQYTSAYDLALIAR-AAFERDDFRRYIATRTA 234
Query: 194 EIKGKK------YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ N +G++ G G KTGFT + V A + ++L +LGA
Sbjct: 235 SLPSTPGRSALALTGDNTLLGSYPGMLGGKTGFTDLARQTYVGVAERDGRTLAVTLLGAE 294
Query: 248 DRN-TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
+ + +LL+ GF D + + D +++ + +
Sbjct: 295 NAPLGSLGEATALLNWGFALAPDEAVGHLVTPDQGKKDENKDK 337
>gi|167465655|ref|ZP_02330744.1| serine-type D-Ala-D-Ala carboxypeptidase [Paenibacillus larvae
subsp. larvae BRL-230010]
Length = 275
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 14/163 (8%)
Query: 185 MHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + N N+ + G DG+KTG T +G+ +A +GD LI+
Sbjct: 69 RETDKTPMINFNWMLEGNKGNINFKPYAYDGLDGLKTGHTNEAGYCFTGTAQRGDMRLIS 128
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301
V++G R + + +L GF N RK ++ +Q + +E+ K
Sbjct: 129 VVMGTNSEPKRFQETRKVLDYGFNNFEMRKVLDAN-APVEEQKTVKISKGVKKEIEAGVK 187
Query: 302 EIINYNTQMKEAKDKES----------HFIDFEKITLLKNKIT 334
E +++ + K + +K +
Sbjct: 188 EPVSFVVKKGSGDVKVTGKVDPVSDKDLVAPIKKGDKVGTATL 230
>gi|291563266|emb|CBL42082.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SS3/4]
Length = 322
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 60/271 (22%), Positives = 108/271 (39%), Gaps = 24/271 (8%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A L+ + S+ ET + + G+ + NPAS TK+MTA + +
Sbjct: 54 FAADLAVVTDETSVDETLTAESAGVFPLDGGNAVFAQDVFERRNPASTTKVMTALIALKY 113
Query: 69 LKEKKAMLTTPITISKNASEYPPSNST--FKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
L +T+ + + +S G +TL+ L L++ S ND A AIA
Sbjct: 114 -----GNLDDVVTVPQESVITESGSSMAGVVPGDKLTLEQLLYGLLIPSGNDAANAIAVH 168
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ + + FV+ MN + +G + THF NA+G+ HY TA D+ ++ + ++
Sbjct: 169 MGGSIEGFVKMMNEEAVQIGATGTHFANANGLTNADHYMTAYDLYLMFHEAL-KYEKFRD 227
Query: 187 YFQIKGLEIKG-----------KKYPNTN----WAVGTFLGADGMKTGFTCASGFNI-VA 230
K N + L G KTG T A+G+ + +
Sbjct: 228 IIGTKTYTASYKGADGSDKTASWSVSNYYMLGKREMPDGLSVFGGKTGTTQAAGYCLIMG 287
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
G + +V++ A R+ ++++
Sbjct: 288 ETDAGGKEYASVVMHADSRDALYSDMSTIIE 318
>gi|210612733|ref|ZP_03289448.1| hypothetical protein CLONEX_01650 [Clostridium nexile DSM 1787]
gi|210151426|gb|EEA82434.1| hypothetical protein CLONEX_01650 [Clostridium nexile DSM 1787]
Length = 324
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 22/249 (8%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
L + V + PAS TK++T Y+ + L+ +T+SKNA
Sbjct: 74 AAALFGVDQKKVFLSEHMHDRLFPASTTKILTLYLALKY-----GTLSDEVTVSKNAVSV 128
Query: 90 PPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
P +S ++G +TL++ + L++ S ND AVAIAE + + FVQ MN + LG
Sbjct: 129 PSDSSVAGLREGEQLTLEDLVYGLMLPSGNDSAVAIAEHISGSVDAFVQLMNQEANALGA 188
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF--------PQYMHYFQIKGLEIKGKK 199
+ +HF+N HG HYTTA D+ ++ + + P Y + ++
Sbjct: 189 TNSHFVNPHGYHDKDHYTTAYDLYLIFNQGIQNEKFVDIISSPSYTTDIKEPDGSVRSVT 248
Query: 200 YPNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGD-QSLIAVILGALDRNTR 252
+ +N + G KTG T +G +V + I+V++GA +N
Sbjct: 249 WRQSNLFVNGTRTAPENVTVVGGKTGTTDEAGACLVLYEQDSQSRPYISVVMGAESKNAL 308
Query: 253 NKVSASLLS 261
SLLS
Sbjct: 309 YTTMDSLLS 317
>gi|293375518|ref|ZP_06621795.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sanguinis
PC909]
gi|292645858|gb|EFF63891.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sanguinis
PC909]
Length = 324
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/248 (22%), Positives = 93/248 (37%), Gaps = 14/248 (5%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L+D +I E PD PASLTK+MT V + ++
Sbjct: 75 IYSSNAILVDLTANEIIYERNPDVITYPASLTKMMTVLVAIENMPNTPMVVDVDF---NK 131
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
E + + F G ++ D+ L ++ S D A +A + +E+ FV+ MN ++ L
Sbjct: 132 LYEEGAALAGFSNGQVVSGDDLLYGTMLPSGADAAQTLANYVAGSEEAFVELMNQKAREL 191
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKKYPNT 203
G+++THF N G+ HY+T RDMA+L + F + + +
Sbjct: 192 GMTSTHFTNVTGLHDDNHYSTVRDMAVLVKAALYNDKFREVYSAKSYVTSTTPMLVFTSR 251
Query: 204 NWAVGTFLG-----ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNK 254
+ + G KTG+T + + + A G V A
Sbjct: 252 MFDRLSSPTFGRVEMLGGKTGYTHEAQLCLASYATDGKHEYALVTTHADGSAYTPQYHVL 311
Query: 255 VSASLLSM 262
+ L +
Sbjct: 312 DAVYLYNY 319
>gi|313472221|ref|ZP_07812713.1| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
1153]
gi|313449097|gb|EEQ68608.2| D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus jensenii
1153]
Length = 313
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 49/292 (16%), Positives = 102/292 (34%), Gaps = 30/292 (10%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
++D TG ++ + + ASLTK++T V+ + + K I ISK+ ++
Sbjct: 1 MMDEKTGQILYQRNATKKYAVASLTKILTLAVIMEDIHKHKLDWDQEIQISKDVAKVADD 60
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNTSKNLGLS 148
++ LI A E + + F M +K G+
Sbjct: 61 WHFSNVPLVYNERYTVRSLIESMMIVSADGSTEALALADAGSVAAFNYKMKVVAKRAGVK 120
Query: 149 ATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
N G+ + +A+DMA++S + +P+ ++ + K
Sbjct: 121 NPEIYNMIGLSNGELGDLKLPKIDDNQENQFSAKDMALVSKYLIDKYPEVLNITKTKYAN 180
Query: 195 IKGKKYPNTNWAVGTFL-----------GADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K ++ ++ DG+KTG T A+G+ V + ++ +I V+
Sbjct: 181 FKIRQDNEMKMENIIYMLEGMGYGPKKGTMDGLKTGKTDAAGYCYVGTGTFDNRRVITVV 240
Query: 244 LGALDRNT-RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
L + + + +++ F K + YQ+ +
Sbjct: 241 LDVPGEYSNQFIQTNNMIDTVFDKYQLVKVDKNNLPKKYQKITITSKKQKRK 292
>gi|325840226|ref|ZP_08166993.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
gi|325490374|gb|EGC92699.1| serine-type D-Ala-D-Ala carboxypeptidase [Turicibacter sp. HGF1]
Length = 324
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/248 (22%), Positives = 93/248 (37%), Gaps = 14/248 (5%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L+D +I E PD PASLTK+MT V + ++
Sbjct: 75 IYSSNAILVDLTANEIIYERNPDVITYPASLTKMMTVLVAIENMPNTPMVVDVDF---NK 131
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
E + + F G ++ D+ L ++ S D A +A + +E+ FV+ MN ++ L
Sbjct: 132 LYEEGAALAGFSNGQVVSGDDLLYGTMLPSGADAAQTLANYVAGSEEAFVELMNQKAREL 191
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQIKGLEIKGKKYPNT 203
G+++THF N G+ HY+T RDMA+L + F + + +
Sbjct: 192 GMTSTHFTNVTGLHDDNHYSTVRDMAVLVKAALYNDKFREIYSAKSYVTSTTPMLVFTSR 251
Query: 204 NWAVGTFLG-----ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNK 254
+ + G KTG+T + + + A G V A
Sbjct: 252 MFDRLSSPTFGRVEMLGGKTGYTHEAQLCLASYATDGKHEYALVTTHADGSAYTPQYHVL 311
Query: 255 VSASLLSM 262
+ L +
Sbjct: 312 DAVYLYNY 319
>gi|145505585|ref|XP_001438759.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405931|emb|CAK71362.1| unnamed protein product [Paramecium tetraurelia]
Length = 360
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 56/249 (22%), Positives = 98/249 (39%), Gaps = 15/249 (6%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + + NTG I + AS+TK++T + + L I +
Sbjct: 105 FKVSAQSWAIFNGNTGEYITGYNQNKCRQIASITKIVTCII--ENAFLFQIKL---INQT 159
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT---EKKFVQHMNN 140
K A + +++ KG ++ L + L L++ S ND AV ++ + F++ MN
Sbjct: 160 KQAQKISGTSAGLLKGDSIFLRDLLYGLMLPSGNDAAVTLSYNFQLYSLENDHFLKEMNR 219
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP-------QYMHYFQIKGL 193
+ LGLS T F N HG+ +++TA D+ ++ + Q L
Sbjct: 220 FVQALGLSNTQFSNVHGLCNENNFSTAYDVGKFTYESLQNEQFQKIVRTQSYFCETPNQL 279
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ ++ N G G+KTG T +G ++V S I V+L R
Sbjct: 280 QNTSRELYWENTNKLLQQGFKGVKTGITKEAGPSVVEYFQDSTNSYIIVLLNCSSSENRW 339
Query: 254 KVSASLLSM 262
+ LL
Sbjct: 340 TDALRLLQW 348
>gi|254468773|ref|ZP_05082179.1| penicillin-binding protein 7 [beta proteobacterium KB13]
gi|207087583|gb|EDZ64866.1| penicillin-binding protein 7 [beta proteobacterium KB13]
Length = 285
Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats.
Identities = 64/274 (23%), Positives = 111/274 (40%), Gaps = 17/274 (6%)
Query: 2 RQFLVIIAMAMLSNIF-------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
++ + + + +++N T K P + D ++G +I + + A
Sbjct: 3 KRLVATLFILLINNFAFAEYFDYSKYYNQLTIKSPKAIIYDADSGDIIFQKKANEKSAIA 62
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
SLTKLMTA V+ L + I+ K+ + S GS +T L + ++
Sbjct: 63 SLTKLMTAMVLIDS----NLDLNEKVKITKKDQDRIKGTKSRLWLGSELTRKELLSIALI 118
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S N A A++ S +K FVQ MN +K LG+ T F + G+ ++ T + +
Sbjct: 119 ASDNRAASALSNSYPGGKKAFVQAMNVKAKQLGMDDTSFADPTGLDKNNISTAIDLVKMT 178
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVGTFLG-ADGMKTGFTCASGFNI 228
+ + + IK KK Y NTN V L D KTG+ +G +
Sbjct: 179 QAAQQYPIIRELSTSSYYEAYIKNKKIRLNYNNTNLLVRQGLWDIDISKTGYIREAGKCL 238
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+ D+ +I V L + + TR + +
Sbjct: 239 IMQTKVMDKPIIMVFLKSYGKYTRTADAKRVKKW 272
>gi|268607994|ref|ZP_06141725.1| hypothetical protein RflaF_00660 [Ruminococcus flavefaciens FD-1]
Length = 364
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 11/245 (4%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
A+ L++ + +IA N + PASLTK+MT V ++ + +
Sbjct: 99 AKEFDARNAILINADQNEIIAYNGERYRMYPASLTKVMTLIVAVENAEDLHDTVLITDKM 158
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
E S + F G T +++ L +I+ S D A A+A+ + +EKKFV+ MN +
Sbjct: 159 VTPYIEQDASRAGFLPGETPSVEALLYGMILNSGADAASAVAKYVAGSEKKFVELMNKKA 218
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-------YMHYFQIKGLEI 195
+ +GL ATHF N G+ HY+TA DMA++ + + + +
Sbjct: 219 EEMGLYATHFTNVVGLHDPQHYSTAEDMAMILKYAIGNKTCKKILSAYEYKFPETEQNPE 278
Query: 196 KGKKYPNTNWAVGTFLG----ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ G KTGFT +G I + A+ ++ I V+ G
Sbjct: 279 GLTFTSTLFTRMYGDEIDGVKILGGKTGFTDKAGNCIESFAVINGETYILVLCGGTTNWN 338
Query: 252 RNKVS 256
+
Sbjct: 339 MVYDT 343
>gi|302335807|ref|YP_003801014.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli
DSM 7084]
gi|301319647|gb|ADK68134.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Olsenella uli
DSM 7084]
Length = 305
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 55/261 (21%), Positives = 93/261 (35%), Gaps = 18/261 (6%)
Query: 5 LVIIAMAMLSNIFPFLSI-------AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
L++ +A+ P + + + D + D PASL
Sbjct: 23 LLLSTVALACAAGPAVLQEGRRPLHPGAWRSQSVYVYDVTDDREVISVNGDQRRAPASLA 82
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KLMT YV + + ++ A S + F G T + + ++ S
Sbjct: 83 KLMTTYVALRHVDDLSSLAPVSSEAYARAVTGNCSMAGFVPGERTTFRDLMYATMLVSGG 142
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
+ A+++AE+ C + V MN + GL T + N G+ G +TTARD+A L
Sbjct: 143 EAAMSLAENACGSTDACVAEMNEVAGQWGLRDTSYRNVEGLDAEGQHTTARDVASLVRHA 202
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYP-------NTNWAVGTFL----GADGMKTGFTCASGF 226
D + + +P +G + G K+G T +G
Sbjct: 203 LEDGNFRTLFCTPQFGSSPTTAHPDGVLLESTVLSKLGRYDTRGFTILGGKSGTTGDAGL 262
Query: 227 NIVASAIQGDQSLIAVILGAL 247
A +G I V++GA
Sbjct: 263 CWATLAEKGGHRYIVVVMGAP 283
>gi|257065656|ref|YP_003151912.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Anaerococcus
prevotii DSM 20548]
gi|256797536|gb|ACV28191.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Anaerococcus
prevotii DSM 20548]
Length = 288
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 45/262 (17%), Positives = 90/262 (34%), Gaps = 18/262 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA-------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
+++++++ + ++ I + E +K + + + + P A
Sbjct: 3 KKYIILLGLCLIFLIGGLNFVKRDSKFDLEDSKSKAVYIYNLTDDKKVYGKNENKPLPMA 62
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
SLTK+MT V + + A S + F T T + + I+
Sbjct: 63 SLTKIMTLLVSLDHVSNLGELAPIDYDSYMRAVSENASMAGFLANETTTYRDLMYGTILA 122
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
S + A ++A ++ + FV MN L L T + NA G+ ++ +A+D A+L
Sbjct: 123 SGAEAADSLAINVAGSIDSFVDLMNEKVGELNLENTSYANADGMDDRRNFQSAKDCAMLI 182
Query: 175 WRIKTD-------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCA 223
D + + + G K+G T
Sbjct: 183 KYGLEDGNFRAIFTKRDYLSQATNEHPDGVYIESTIFSHLKDYEENGFEIIGGKSGTTDE 242
Query: 224 SGFNIVASAIQGDQSLIAVILG 245
+G A + + I V++G
Sbjct: 243 AGLCWATLAEKDGKEYIIVVMG 264
>gi|291522262|emb|CBK80555.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
Length = 327
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 50/253 (19%), Positives = 85/253 (33%), Gaps = 19/253 (7%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK--EKKAMLTTPITI 82
L T VI PAS+TK++TA V ++ +++ LT + +
Sbjct: 74 QLDAKEIFLTGTTDKTVITAKNIYTQMPPASITKILTALVALENVQDLDQEVTLTDDVNV 133
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
++ + +LI + + F MN +
Sbjct: 134 DVADAQVCGFKAG---DKMTLKTLLYCMLIYSGNDAANAVASAVSGGDIPAFCDKMNAEA 190
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSW------------RIKTDFPQYMHYFQI 190
+ LG + THF+ +G+ HYTTA D+ ++ + Q
Sbjct: 191 QRLGATQTHFVTPNGLDDPDHYTTAYDLYLIFNECLKYDLFKDAIHQAHYTAVFTRNGQE 250
Query: 191 KGLEIKGKKYP-NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALD 248
Y N + G KTG T +G ++ G I+V+LG D
Sbjct: 251 VQQTYDSTNYYLLGNKTPPEGVSIIGGKTGTTDNAGLCLILYVEDGSGNGYISVLLGCPD 310
Query: 249 RNTRNKVSASLLS 261
++T + LLS
Sbjct: 311 KDTLYSSMSKLLS 323
>gi|315924182|ref|ZP_07920408.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315622584|gb|EFV02539.1| serine-type D-Ala-D-Ala carboxypeptidase [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 454
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 70/282 (24%), Positives = 114/282 (40%), Gaps = 37/282 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M F++I+ A+++ + + ++ ++ +G VI PAS TK+M
Sbjct: 1 MAVFVLILTFAVVTCLPAYAAMPSYTGDEAVYAVEEKSGDVITAQNEHKRMYPASTTKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPS--NSTFKKGSTMTLDNALKLLIVKSAND 118
T V ++ + + + I S + KKG T T L++ S ND
Sbjct: 61 TTLVALDYVAD---KMDQQVKIGDEVSLITADSSKADLKKGDTCTWRQLFYGLLLPSGND 117
Query: 119 IAVAIAES------------LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
A+AIA++ K KFV MN + L L +HF+N HG+ HYTT
Sbjct: 118 AALAIAKNIGRAASGDRELGTDKAIDKFVSLMNRKAAQLQLEDSHFVNPHGLHDANHYTT 177
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYPNTN-----------------WA 206
A D+ +S + + KK+ NTN
Sbjct: 178 AADLEKISAAALENPTIRKIVQTKVYSCKLKSGQKKWINTNSLIISTNDLAKVRESSHNG 237
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
A G+KTG T +G +V S+ GD++++AVIL + +
Sbjct: 238 KQYNPYATGVKTGHTDEAGRCLVFSSKDGDKTMVAVILHSDN 279
>gi|229030194|ref|ZP_04186253.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH1271]
gi|228731112|gb|EEL82035.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH1271]
Length = 274
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 37/193 (19%), Positives = 64/193 (33%), Gaps = 16/193 (8%)
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-----KKYPNTNWA----VG 208
+ +ARD AIL+ R+ DFP+ + +I + N NW +
Sbjct: 26 TPDEKNKMSARDCAILAQRLIQDFPKMLDTAKIPKKTFQQGGKYPIDMTNFNWMLKGLIK 85
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G DG+KTG T +G + + LI+V++ A R + L GF N
Sbjct: 86 QYEGVDGLKTGTTPEAGDCFTGTVERNGMRLISVVIKANSHAARFDETKKLYDYGFANFE 145
Query: 269 DRKKINYIIKDFYQQ-------NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
+K + + V + V + + + E
Sbjct: 146 VKKAYGKDSVVKGYETVRVANAKDKDVVVQTKQAVSLPIPKNNKDVYKKEFKVLNEEQEA 205
Query: 322 DFEKITLLKNKIT 334
+K + I
Sbjct: 206 PIKKGVTISKMII 218
>gi|294781926|ref|ZP_06747258.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp.
1_1_41FAA]
gi|294481737|gb|EFG29506.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp.
1_1_41FAA]
Length = 435
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 10/240 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ D N G+VI D + AS+TK+M+ V F + L + ISK +
Sbjct: 181 RAVLVGDLN-GNVIFSKNADTMYPLASVTKVMSLLVTFDEINAGNIGLHDSVRISKTPLK 239
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLG- 146
Y S K+G L++ +K V SAN+ A+AE + + + FV MN K LG
Sbjct: 240 YGGSGIALKEGQIFILEDLIKASAVYSANNATYAMAEYVGEGSIFNFVAKMNKKLKQLGL 299
Query: 147 LSATHFMNAHGVVQHGHYTTARD------MAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+ + G+ + + +K D + + +
Sbjct: 300 QNDIKYHTPAGLPTRNTKMPMDEGTPRGIYKLSIEALKYDKYIEIAGIKNTKIYNGKISI 359
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N +G G G+KTGF + +NI + LI V++G TR+ + +++
Sbjct: 360 RNRNHLIGE-DGVYGIKTGFHKEAKYNITVAVKFEGIDLIIVVMGGETYKTRDDLVRTII 418
>gi|313885620|ref|ZP_07819370.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619350|gb|EFR30789.1| serine-type D-Ala-D-Ala carboxypeptidase [Eremococcus coleocola
ACS-139-V-Col8]
Length = 449
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 50/306 (16%), Positives = 105/306 (34%), Gaps = 32/306 (10%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ I ++ L+ +++ + G ++ E D L+KL+T Y
Sbjct: 14 IITIFISPLTTFAQARFDNFNVDQDLSAMVIEGHNGQILFEQNTDKLVEVGDLSKLLTLY 73
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDI 119
+V +K+ + T + IS A + +++ ++ ++++SAN
Sbjct: 74 LVLDAVKQGNISMDTEVPISDQAFYISQNYDINNVPLRQDYPYKVEDLIQAVVIQSANGA 133
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----------------- 162
+A+A+ + E KFV+ M L+ NA G+ Q
Sbjct: 134 TLALAQLIEPDEGKFVELMRQQLSQWHLNDFEIFNATGMTQTQINDSYAPYTDDREKNKE 193
Query: 163 -HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI-----KGKKYPNTNW----AVGTFLG 212
+ + +A + + + +P ++Y Q N N +
Sbjct: 194 VNRMSTEVVATIVYHLMDVYPDILNYSQKDVDVFVKDSDDAFDMNNANLLVSGGEYNYDL 253
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
ADG+ + + +IVA+A + +I + LG D + L + F
Sbjct: 254 ADGLMVDDSHEAQASIVATAEKDGLRVIGISLGQEDPVAMYQDMIDLFNQSFSAYRLEAI 313
Query: 273 INYIIK 278
Sbjct: 314 AKAGDP 319
>gi|46203464|ref|ZP_00208979.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
magnetotacticum MS-1]
Length = 215
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 37/175 (21%), Positives = 61/175 (34%), Gaps = 4/175 (2%)
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
TARD+++L+ + DFP+Y F G K N N + GADG+KTG T A
Sbjct: 1 MMTARDLSVLARHLIGDFPEYYPLFSQMEFVFNGIKQGNRNPLLYNTPGADGLKTGHTEA 60
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF--- 280
+G+ + AS +G++ +I V+ G R + S L F +
Sbjct: 61 AGYGLTASIKRGNRRIIMVLNGMSSMKERAEESRRLTEWAFREWETYALFKAGEEVIPDA 120
Query: 281 -YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKIT 334
VP + + + N + + +
Sbjct: 121 EVWLGQKETVPLLVKNAVEVSMQRRNRLEMKVTTIYNGPIAAPIKAGQEVGKIVV 175
>gi|5759263|gb|AAD51058.1|AF175293_3 D,D carboxypeptidase [Enterococcus faecium]
Length = 356
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 51/260 (19%), Positives = 100/260 (38%), Gaps = 29/260 (11%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+++ +T V+ + PAS K++ A + + +
Sbjct: 98 NITAANAIVMNKDTNEVLYQKKSTAQIAPASTAKMIMALTALDYC-----SPEDEMKVGA 152
Query: 85 NASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAES------------LCKT 130
+S KG T+T+ L L++ S ND A +A + +
Sbjct: 153 EIEMIQSDSSTAWLMKGDTLTVRQLLIALMLPSGNDAAYTLAVNTGKKIAGDKSLTHQQA 212
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM----H 186
+ F+ +N + +LG + + F+ G G YTTA D+AI++ + +
Sbjct: 213 IEVFMDKVNEKAVDLGATNSKFIAPDGYDAEGQYTTAYDLAIIAKACLDNPIISEIVASY 272
Query: 187 YFQIKGLEIKGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
K + Y N+N + G+KTG + G IV++A+ ++ I
Sbjct: 273 SSYEKWPNGREVTYSNSNELLDPNSPYYRPEVIGLKTGTSSLGGACIVSAAVIDGETYIC 332
Query: 242 VILGALDRNTRNKVSASLLS 261
V++G+ + +R + S +L
Sbjct: 333 VVMGS-TKESRFQDSVDILD 351
>gi|218678836|ref|ZP_03526733.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894]
Length = 168
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 49/165 (29%), Positives = 79/165 (47%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + + LS+ + ++D +G ++ + D PASLTK+M
Sbjct: 1 MTKMTSRLLATALSSAMVMGAFTAVQAGQASFVIDAQSGQILEASNQDELNYPASLTKMM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y+ F L E + +T+S+NA P G +TL A++ ++V SAND A
Sbjct: 61 TLYLAFEALHEGRLKWDQKLTMSENAESKEPFKLAIGAGRQVTLREAVESIVVLSANDSA 120
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
VAIAE L +E+ F + M + ++ LG++ T F N G+ T
Sbjct: 121 VAIAEQLGGSEQAFAKTMTDKARQLGMTNTVFKNPSGLPDPEQVT 165
>gi|296877208|ref|ZP_06901248.1| DD-carboxypeptidase [Streptococcus parasanguinis ATCC 15912]
gi|296431728|gb|EFH17535.1| DD-carboxypeptidase [Streptococcus parasanguinis ATCC 15912]
Length = 440
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 77/336 (22%), Positives = 134/336 (39%), Gaps = 36/336 (10%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
K ++D NTG ++ + D + S+ KLM+AYVVF LKE K T +T ++
Sbjct: 61 KPKADIVIDANTGAILYGDNIDTVRDSGSMAKLMSAYVVFRALKEGKIKYDTVVTATEAD 120
Query: 87 SEYPPS----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNT 141
+ NS G + +K+L V S++ + +A + KF+ MN
Sbjct: 121 QAISENNLLSNSPIVAGVDYKVSELIKMLFVPSSSAAVIMLANAVTDNDPDKFLDLMNQY 180
Query: 142 SKNLGLSATHFMNAHGVV---------------QHGHYTTARDMAILSWRIKTDFPQYMH 186
S+ +G+S T + N +G + + TARDM+IL++ I D P+ +
Sbjct: 181 SQEMGMSHTKWHNPNGAMISVLQGYYNPQRYDVNANNEITARDMSILAYHIVNDLPEMLE 240
Query: 187 YFQIKGLEIKGKK-----YPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQ 237
Y + I Y N N ++ G DG+KTG + + +N A+ +G Q
Sbjct: 241 YTKQAHTTIMEGTPYEQSYDNYNTSLEGGKFALKGTDGLKTGSSPTADYNYTATTKRGKQ 300
Query: 238 SLIAVILGALDRNT------RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPN 291
+I VILG + + RN++ +L F + +K ++ + +
Sbjct: 301 RIIEVILGVGNYDVEIAESYRNQIGNTLAEKMFADYQYKKVLSAG-EHKIDGKTIQLKQD 359
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
V K + ++ K
Sbjct: 360 FYATVKKGTKPALKLEDNRLVVQNGLQQVSPSIKAG 395
>gi|145510915|ref|XP_001441385.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408635|emb|CAK73988.1| unnamed protein product [Paramecium tetraurelia]
Length = 334
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 62/266 (23%), Positives = 102/266 (38%), Gaps = 24/266 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ +++ G + ASLTKLMT YV +++ K L + +S
Sbjct: 66 PLVTAQNFIVMNGIDGQHLTNFNSKKRVQVASLTKLMTCYVAIQLIRDLKLNLYQIVYVS 125
Query: 84 KNAS-------EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK--- 133
+ + +++ +TL + L L++ S ND A IAE+L + K
Sbjct: 126 YDVYILTFKAVQISGTSAFLHPYDRITLYDLLHGLMLPSGNDAANVIAENLSQCVKDPVS 185
Query: 134 ----------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
F+ MN + L ++ T F N HG+ Y+ A D+AIL +I D
Sbjct: 186 NIALHYRIQPFISLMNQYALQLEMNDTQFYNPHGLSNDQSYSCAEDLAILCKQIINDPML 245
Query: 184 YMHYFQIKGLEIK---GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ + + NTN + + G G KTGFT +G + LI
Sbjct: 246 MEIVNKKEHQATNKLINLTWKNTNR-MLEYEGYCGFKTGFTNKAGPCLATLFKNDQICLI 304
Query: 241 AVILGALDRNTRNKVSASLLSMGFYN 266
+IL L + R + L +
Sbjct: 305 IIILNCLSKEVRWDDTIKLSNWAQRK 330
>gi|164686861|ref|ZP_02210889.1| hypothetical protein CLOBAR_00457 [Clostridium bartlettii DSM
16795]
gi|164604251|gb|EDQ97716.1| hypothetical protein CLOBAR_00457 [Clostridium bartlettii DSM
16795]
Length = 520
Score = 103 bits (255), Expect = 5e-20, Method: Composition-based stats.
Identities = 75/344 (21%), Positives = 140/344 (40%), Gaps = 23/344 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
R + +++ ML + F++ A T YT++D N+G +I + PAS
Sbjct: 6 RIIAIFLSLMMLISSGIFVNNAHAAQAKPTVYAHSYTVMDANSGEIIISEQENKRIYPAS 65
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
KL+TA V T + N + + + K G TL+ L +L+V S
Sbjct: 66 TIKLLTAIVAIEN--CSLYKRITVKKSTLNKVDVETTTAGLKPGYAYTLEELLNMLLVYS 123
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH---YTTARDMAI 172
A D A IAES+ T + FV+ MN +K LG++ ++F N G+ H + Y+T+ D+A
Sbjct: 124 AGDAAEIIAESVGGTRENFVEMMNIRAKELGMNDSYFDNPVGMDWHKNANIYSTSSDIAK 183
Query: 173 LSWRIKTDFPQYMHYFQIK-----GLEIKGKKYPNTNWAVGTFLG------ADGMKTGFT 221
L+ T+ + + + K K +N + + G KTG +
Sbjct: 184 LTRYAMTNDTIRAIVKKPQYVIKNYYKGKSKTLYASNNFLRNYSYSKNLFTIIGSKTGTS 243
Query: 222 CASGFNIVASAIQ-GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
+G+ + A+A + +I G R + +LL+ F N + + ++ +
Sbjct: 244 DKAGYALSATARDSSGREVICAFFGKSTRMQMFQDINTLLTYTFNNYKNILEKSFYDIRY 303
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
+ + T + +TQ+ + + + +
Sbjct: 304 SSTKTIINKYLANGVLTMTSSGKFSGSTQVSKKEFVTTTNKALK 347
>gi|298526808|ref|ZP_07014217.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|298496602|gb|EFI31896.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
Length = 330
Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 53/232 (22%), Positives = 88/232 (37%), Gaps = 12/232 (5%)
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99
VIA P PAS+ K++ A L + + + + + G
Sbjct: 31 RVIAARDPHGRHRPASVIKVLVAM-----ASINTLTLNKSVAGTADDAAVEGTKVGVNTG 85
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
T T++ L L++ S ND A A+A L + +N + LG T G+
Sbjct: 86 GTYTVNQLLHGLLMHSGNDAAYALARQLGGMPAAL-EKINLLAAKLGGRDTRVATPSGLD 144
Query: 160 QHGHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214
G T+A D+ + + + + G + N N + + GA
Sbjct: 145 GPGMSTSAYDIGLFYRYAWQNPVFADIVATRTFDFPGHGDHPGYELENDNQLLYNYPGAL 204
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVIL-GALDRNTRNKVSASLLSMGFY 265
G KTG+T +G V +A + + L+ V+L G + +A LL GF
Sbjct: 205 GGKTGYTDDAGQTFVGAANRDGRRLMTVLLHGTRQPIPPWEQAAHLLDYGFN 256
>gi|167835875|ref|ZP_02462758.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
thailandensis MSMB43]
Length = 369
Score = 103 bits (255), Expect = 6e-20, Method: Composition-based stats.
Identities = 55/256 (21%), Positives = 98/256 (38%), Gaps = 10/256 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + + ++D TG + E + AS+TKLM + V
Sbjct: 113 LLASCGYTAASRRLLRSRAIYVVDERTGTALIEKNANRVVPIASVTKLMMSMVALDTRAP 172
Query: 72 KKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L +S ++ + S K GS ++ + L + ++ S N A A++
Sbjct: 173 MSRPL----RVSAQDRDYEKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGG 228
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS---WRIKTDFPQYMHY 187
FV MN ++ LG+ THF+NA G+ + +TARD++ L R
Sbjct: 229 RPAFVAAMNRKARTLGMKRTHFVNATGL-SPRNVSTARDLSRLVAAANRYPHIKTFSTDT 287
Query: 188 FQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ +Y N+N KTGF +G +V + + V+LGA
Sbjct: 288 SKTVFPNRGELRYVNSNALVRAGDSSIVLQKTGFINEAGHCVVLRYAVRGRPVDIVLLGA 347
Query: 247 LDRNTRNKVSASLLSM 262
+ +A +
Sbjct: 348 PGPHDHVADAAKIRRW 363
>gi|167749407|ref|ZP_02421534.1| hypothetical protein EUBSIR_00361 [Eubacterium siraeum DSM 15702]
gi|167657579|gb|EDS01709.1| hypothetical protein EUBSIR_00361 [Eubacterium siraeum DSM 15702]
Length = 349
Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats.
Identities = 59/260 (22%), Positives = 87/260 (33%), Gaps = 26/260 (10%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SE 88
D G VI PAS TK++TA + + S+
Sbjct: 87 AAICYDLTDGKVIYSKNAGKKVFPASTTKILTALTAIEYTAPEY----EYYVGSELGLVA 142
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-----------LCKTEKKFVQH 137
S S +GS++ + L ++ S ND A IA + F
Sbjct: 143 QDSSMSWIAEGSSLCRNEILTAMLAPSGNDAAYTIAVNVARKLYGDDISDNDAVAYFAVL 202
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKG 192
MN+ +K LG THF G HYTTA DM R D +
Sbjct: 203 MNDYAKKLGAKNTHFTVPDGYHDDEHYTTAEDMLQFAIAATQSRTICDITCQ-PLAIVYD 261
Query: 193 LEIKGKKYPNTNW---AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ + N N GMKTGFT +GF + A + ++ ++ G
Sbjct: 262 EQGNVHSWDNGNKLLTDTTIPYEVYGMKTGFTDEAGFCFIGYAGMNGKKILTLVYGGE-V 320
Query: 250 NTRNKVSASLLSMGFYNKTD 269
R + L+ +GF +
Sbjct: 321 ENRYADTKKLMDLGFDIYDE 340
>gi|219668743|ref|YP_002459178.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
hafniense DCB-2]
gi|219539003|gb|ACL20742.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
hafniense DCB-2]
Length = 352
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 69/261 (26%), Positives = 111/261 (42%), Gaps = 19/261 (7%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK-EKKAMLTTPITISKNAS 87
Y +L+ TG + E D PAS KL+T +V L+ ++ L + +
Sbjct: 90 SSYLMLNLQTGERLLEKNGDTHRAPASTVKLLTGLLVHEKLQADELITLGEEVKV----- 144
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
S FK G + + + + V SAND A A+A + T+++F+Q MN+ + LG
Sbjct: 145 --EGSVLGFKPGDKILVKDLFTAMYVYSANDAANALAVAAYGTKEQFIQAMNSYAAELGC 202
Query: 148 SATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY--- 200
+ F A G+ YTTA+D+AI+ + ++ + G K
Sbjct: 203 QDSQFKTADGMPAEDQYTTAKDLAIIAAKVTETPVLMDYINQKKASVEWTDANGWKQVRE 262
Query: 201 -PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN +G + G G+KTG T +G +V D L+ V+LG+ R + L
Sbjct: 263 ISNTNQLLGIYPGDQGLKTGTTTEAGQCLVTYITSEDGDLLLVLLGS---KQRYTDTVEL 319
Query: 260 LSMGFYNKTDRKKINYIIKDF 280
L G R + I+
Sbjct: 320 LDQGMAKIRTRSALKNILSSP 340
>gi|42781623|ref|NP_978870.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
ATCC 10987]
gi|42737546|gb|AAS41478.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus
ATCC 10987]
Length = 253
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 16/250 (6%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ +++ + F + L+D ++G V+ + P A+L
Sbjct: 4 LKKFAILLLSFVITVLIVLYFYLYVNGPIIQAKSAILIDAHSGEVVYTKNEETPIQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+ L E L + IS + S T+ + L L++
Sbjct: 64 SKLMTEYIALEQLNEGNIQLDEVVKISNEVFQAETSPIQVTSKDKTTVRDLLHALLLTGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAI 172
N A+A+AE + E F Q MN +K L LS NA G+ + TTA ++A
Sbjct: 124 NRSALALAEHIAGNEDNFTQLMNEKAKRLKLSQPSPFLNATGMNNDTNKLSTTTAIEVAK 183
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCAS 224
L+ + TDFP ++ ++ + K N + G DG++T F+
Sbjct: 184 LATELVTDFPDVLNVTKLTSYQFSFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNG 243
Query: 225 GFNIVASAIQ 234
++ V++A +
Sbjct: 244 NYSFVSTAKR 253
>gi|89894320|ref|YP_517807.1| hypothetical protein DSY1574 [Desulfitobacterium hafniense Y51]
gi|89333768|dbj|BAE83363.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 352
Score = 102 bits (254), Expect = 7e-20, Method: Composition-based stats.
Identities = 70/261 (26%), Positives = 111/261 (42%), Gaps = 19/261 (7%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK-EKKAMLTTPITISKNAS 87
Y +L+ TG + E D PAS KL+T +V L+ ++ L + +
Sbjct: 90 SSYLMLNLQTGERLLEKNGDTHRAPASTVKLLTGLLVHEKLQADELITLGEEVKV----- 144
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
S FK G + + + + V SAND A A+A + T++KF+Q MN+ + LG
Sbjct: 145 --EGSVLGFKPGDKILVKDLFTAMYVYSANDAANALAVAAYGTKEKFIQAMNSYAAELGC 202
Query: 148 SATHFMNAHGVVQHGHYTTARDMAIL----SWRIKTDFPQYMHYFQIKGLEIKGKKY--- 200
+ F A G+ YTTA+D+AI+ + ++ + G K
Sbjct: 203 QDSQFKTADGMPAEDQYTTAKDLAIIAAKVTETPVLMDYINQKKASVEWTDANGWKQVRE 262
Query: 201 -PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN +G + G G+KTG T +G +V D L+ V+LG+ R + L
Sbjct: 263 ISNTNQLLGIYPGDQGLKTGTTTEAGQCLVTYITNEDGDLLLVLLGS---KQRYTDTVEL 319
Query: 260 LSMGFYNKTDRKKINYIIKDF 280
L G R + I+
Sbjct: 320 LDQGMAKIRTRSALKNILSSP 340
>gi|291532121|emb|CBK97706.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum 70/3]
Length = 349
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 58/260 (22%), Positives = 87/260 (33%), Gaps = 26/260 (10%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SE 88
D G VI PAS TK++TA + + S+
Sbjct: 87 AAICYDLTDGKVIYSKNAGKKVFPASTTKILTALTAIEYTAPEY----EYYVGSELGLVA 142
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-----------LCKTEKKFVQH 137
S S +GS++ + L ++ S ND A IA + F
Sbjct: 143 QDSSMSWIAEGSSLCRNEILTAMLAPSGNDAAYTIAVNVARKLYGDDISDNDAVAYFAVL 202
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKG 192
MN+ +K LG THF G HYTTA DM + D +
Sbjct: 203 MNDYAKKLGAKNTHFTVPDGYHDDEHYTTAEDMLKFAIAATQSQTICDITCQ-PLAIVYD 261
Query: 193 LEIKGKKYPNTNW---AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ + N N GMKTGFT +GF + A + ++ ++ G
Sbjct: 262 EQGNVHSWDNGNKLLTDTTIPYEVYGMKTGFTDEAGFCFIGYAGMNGKKILTLVYGGE-V 320
Query: 250 NTRNKVSASLLSMGFYNKTD 269
R + L+ +GF +
Sbjct: 321 ENRYADTKKLMDLGFDIYDE 340
>gi|330817941|ref|YP_004361646.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
gladioli BSR3]
gi|327370334|gb|AEA61690.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
gladioli BSR3]
Length = 411
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 60/255 (23%), Positives = 100/255 (39%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + + ++D TG V+ E AS++KLMTA V
Sbjct: 155 LLASCGYTPATKRLLRSRAIYVVDERTGTVLLERNASQIRPIASVSKLMTAVVSLDRHAP 214
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
++ + + S K GST++ + L + ++ S N A A++
Sbjct: 215 LARRISVTGA---DRDTIKFTGSRLKVGSTLSRRDMLHIALMSSENRAAAALSRDYPGGR 271
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS---WRIKTDFPQYMHYF 188
FV MN ++ LG+S THF+NA G+ + +TARD++ L R T
Sbjct: 272 PAFVAAMNRKARTLGMSNTHFVNATGL-SPRNVSTARDLSRLVAAANRYSTIRAFSTDRA 330
Query: 189 QIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
QI Y N+N G KTGF +G +V G + + V+L A
Sbjct: 331 QIVRPGHGQLSYVNSNALVRGGDRRITLQKTGFINEAGHCVVMRYQIGARPVDVVLLDAP 390
Query: 248 DRNTRNKVSASLLSM 262
+ + +
Sbjct: 391 GPRDHIADAIRIRNW 405
>gi|291558140|emb|CBL35257.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium siraeum V10Sc8a]
Length = 349
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 58/260 (22%), Positives = 87/260 (33%), Gaps = 26/260 (10%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA-SE 88
D G VI PAS TK++TA + + S+
Sbjct: 87 AAICYDLTDGKVIYSKNAGKKVFPASTTKILTALTAIEYTAPEY----EYYVGSELGLVA 142
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-----------LCKTEKKFVQH 137
S S +GS++ + L ++ S ND A IA + F
Sbjct: 143 QDSSMSWIAEGSSLCRNEILTAMLAPSGNDAAYTIAVNVARKLYGDDISDNDAVAYFAVL 202
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKG 192
MN+ +K LG THF G HYTTA DM + D +
Sbjct: 203 MNDYAKKLGAKNTHFTVPDGYHDDEHYTTAEDMLKFAIAATQSQTICDITCQ-PLAIVYD 261
Query: 193 LEIKGKKYPNTNW---AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
+ + N N GMKTGFT +GF + A + ++ ++ G
Sbjct: 262 EQGNVHSWDNGNKLLTDTTIPYEVYGMKTGFTDEAGFCFIGYAGMNGKKILTLVYGGE-V 320
Query: 250 NTRNKVSASLLSMGFYNKTD 269
R + L+ +GF +
Sbjct: 321 ENRYADTKKLMDLGFDIYDE 340
>gi|227500757|ref|ZP_03930806.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus tetradius ATCC
35098]
gi|227217062|gb|EEI82420.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus tetradius ATCC
35098]
Length = 291
Score = 102 bits (253), Expect = 8e-20, Method: Composition-based stats.
Identities = 53/267 (19%), Positives = 103/267 (38%), Gaps = 22/267 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-----------ETNKLPYYTLLDTNTGHVIAENYPDH 49
M++ + ++A+ +L + ++ + + + D
Sbjct: 1 MKKKIGVLALGVLIIVGLVFGKKYLSNKDERFHDDSFTSKAVYIYNLTDDKEVYAKNADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
P ASLTK+MTA V + + A+ +A S + F+ T T + L
Sbjct: 61 PLPMASLTKIMTALVSLEHITDLGALAPIDYDAYMDAVNANASMAGFRANETTTYRDLLY 120
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
I+ S + ++A ++ + FV+ MN+ +K L L+ T + NA G+ +Y +ARD
Sbjct: 121 GTILASGAEACDSLAINVSGSVDDFVRLMNDKAKELKLTNTSYANADGMDDEKNYQSARD 180
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-------NTNWAVGTFL----GADGMKT 218
A+L D + + + L ++P + + G K+
Sbjct: 181 CAMLIKASLEDGNFRAIFTKKEFLSSPTNEHPDGLHIASTIFSHLKDYDENGFEIIGGKS 240
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILG 245
G T +G A + + I V++G
Sbjct: 241 GTTDNAGLCWATLAKKDGKEYIVVVMG 267
>gi|315659824|ref|ZP_07912683.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Staphylococcus lugdunensis M23590]
gi|315495112|gb|EFU83448.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Staphylococcus lugdunensis M23590]
Length = 411
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 73/343 (21%), Positives = 139/343 (40%), Gaps = 45/343 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI--------------AETNKLPYYTLLDTNTGHVIAENY 46
++ F++++ + M+ + + A+ + T G ++ + +
Sbjct: 4 IKGFVLLLCLCMMFSPLTTYAAKTPTQIAEAEKQHIAQHYNPKSMIVT-TQQGQILYDYH 62
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTM 102
+PAS+TKLMT Y+V + + K LT + +S ++ + KG T
Sbjct: 63 QHDNVDPASITKLMTIYLVLDDIDKGKIKLTDEVKVSGRYAKMSRIPGLTTFPLIKGKTY 122
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-- 160
T+ LK + S+N + +AE + F MN ++ L + THF N G
Sbjct: 123 TIQQLLKQGALASSNAAMLVLAEHIDGNSSDFTHRMNRKAQALHMRHTHFNNPSGADNRL 182
Query: 161 ------------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---- 204
H TTA+DMA+L+ ++ P+ + ++ + G NTN
Sbjct: 183 IKPFAPSQYKQQHFSKTTAKDMAVLTQQLVKQHPKVLKITRLTSDKQHGHMLKNTNLSLP 242
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL------GALDRNTRNKVSAS 258
GADG+KTG T G+N+ +A Q + + +V+ ++ R ++S
Sbjct: 243 AQADGLAGADGLKTG-TSNHGYNLALTAKQNNLRIHSVLFQVQPFADERAKHVRQQLSNI 301
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK 301
++ F N RK ++ + Q + ++ + V K
Sbjct: 302 MVRRAFKNYDYRKVLSKG-QHRIQGKMYYVKKDLYDVVPKDHK 343
>gi|114321496|ref|YP_743179.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1
[Alkalilimnicola ehrlichii MLHE-1]
gi|114227890|gb|ABI57689.1| murein-DD-endopeptidase [Alkalilimnicola ehrlichii MLHE-1]
Length = 327
Score = 102 bits (253), Expect = 9e-20, Method: Composition-based stats.
Identities = 47/246 (19%), Positives = 88/246 (35%), Gaps = 8/246 (3%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ + +TG + D P ASLTKLMTA VV LT
Sbjct: 57 EPLQLASVHAAAVYLDTGERLVGKRADMPAPIASLTKLMTALVVVESGAPLDEWLT---I 113
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ + + + S + S + ++L ++ S N +A F+ MN
Sbjct: 114 VPRQHAVTKNAYSRMRVDSRLPRGELVRLALMSSENLATYVLAHHHPGGRAAFIAAMNAK 173
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+K LG++ T F+++ G+ + + +L+ + + + + +G +Y
Sbjct: 174 AKELGMTQTRFVDSSGLSVENVASANDLLKLLAAANEHEVIRDYSTTRYHTAHFRGPRYT 233
Query: 202 ----NTNWAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
NTN V G KTG+ +G + A + + V L + + +
Sbjct: 234 KGYANTNPLVAHSRWQVGLSKTGYLVEAGRCLAMVAEMEGRPVALVFLNSHGTRSPLGDA 293
Query: 257 ASLLSM 262
Sbjct: 294 GRFRRW 299
>gi|160915010|ref|ZP_02077223.1| hypothetical protein EUBDOL_01017 [Eubacterium dolichum DSM 3991]
gi|158432809|gb|EDP11098.1| hypothetical protein EUBDOL_01017 [Eubacterium dolichum DSM 3991]
Length = 330
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/233 (25%), Positives = 100/233 (42%), Gaps = 9/233 (3%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
K Y ++ V+ E + AS++K+MTA + L S+
Sbjct: 21 KAESYCVMSGEDQQVLEEKDMHKQQSVASISKIMTAMIAIEK-----GNLQDRWQCSEAI 75
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
S +K ++L++ L L+++S ND AV IAE + E+ FV MN +K +G
Sbjct: 76 ETVDGSMIYLQKDQMVSLESLLYGLMLRSGNDAAVEIAEHVGGNEENFVAMMNEKAKEIG 135
Query: 147 LSATHFMNAHGVV--QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG-KKYPNT 203
+S T F N G+ G+ +TA DMA+L + + K + ++ N
Sbjct: 136 MSRTLFRNPTGLDEKDGGNVSTAYDMALLMSYALKN-RTFRKIAGTKYYTSEWNYRWKNK 194
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
N + ++ + KTGFT +G +V SA I V L D ++ +
Sbjct: 195 NRLLFSYDKSTAGKTGFTKQAGRTLVTSAKNKQLESIVVTLDMHDDFRFHEQA 247
>gi|324120501|dbj|BAJ78640.1| penicillin binding protein 4 [Staphylococcus epidermidis]
Length = 411
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 83/375 (22%), Positives = 153/375 (40%), Gaps = 51/375 (13%)
Query: 1 MRQFLVIIAMAML------SNIFPFLSIAETNKLPYYT---------LLDTNTGHVIAEN 45
M++ +I+ ++++ +NI+ + TN ++ T G ++ +
Sbjct: 1 MKKIFLIMLISLVYCSFLTNNIYAMTPVEITNNSKEQLDEDLNPRGTVVTTTNGQILYKY 60
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGST 101
+ D +PAS TKLMT V++ + + L + IS+ + + KKG T
Sbjct: 61 HKDKKVDPASTTKLMTMLVIYEDINHSEMRLKDKVKISERYQKMSQLPNLTTFPLKKGQT 120
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
T++ LK + S+N + +AE + KF MN ++ LG++ THF N G
Sbjct: 121 YTIEQLLKQAALNSSNAATLVLAEHIDGDISKFTDRMNREAQLLGMNQTHFTNPSGADNK 180
Query: 162 --------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
YTTA DMAIL+ + +P + Q++ ++ NTN ++
Sbjct: 181 IIKPYEPKKYKDETSSYTTANDMAILTNHLLRKYPNILKMTQLETDTQYHQQLHNTNLSL 240
Query: 208 GT----FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG------ALDRNTRNKVSA 257
DG+KTG T G+N+ +A + + + + R+KV+
Sbjct: 241 PHQSLGMKNVDGLKTG-TSKKGYNLALTAKKDQLRVNTNLFNIQPYPSEKAKFARHKVAN 299
Query: 258 SLLSMGFYNKTDRKKINYIIKDF------YQQNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+L F N T RK I+ + +++L + VP + + + + +
Sbjct: 300 ALTQHAFENYTYRKVISKGVHQIDGKTYNVKEDLYDVVPKDNSNYELEISDKNHLSVKYN 359
Query: 312 EAKDKESHFIDFEKI 326
E H I K+
Sbjct: 360 RQFTNEVH-IPSVKV 373
>gi|296111124|ref|YP_003621505.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc kimchii IMSNU
11154]
gi|295832655|gb|ADG40536.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc kimchii IMSNU
11154]
Length = 421
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 68/374 (18%), Positives = 128/374 (34%), Gaps = 48/374 (12%)
Query: 1 MRQF------LVIIAMAMLSNIFPFLSIAETNK--LPYYTLLDTNTGHVIAENYPDHPWN 52
MR+ +V++ + + L+ K + ++D TG ++AE D
Sbjct: 1 MRRIKVIGVSVVMLFLMTTTVSASTLAKPLDIKQDVSSAIVIDAGTGQILAEKNSDELGP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISK-----NASEYPPSNSTFKKGSTMTLDNA 107
AS +KL+TAY V + K + +TISK + S+ K G +T+
Sbjct: 61 IASQSKLLTAYAVLKAIDSGKIKWSDKVTISKKADLSKQDSHMFSHLAVKAGDRLTVREL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------- 158
+I S+ND A A+AE L + Q + + ++ L L+ + + N+ G
Sbjct: 121 YNTMITLSSNDSAFALAEYLTPKKMTTAQALQSWAEELQLTKSKWYNSAGQVNQDAFENK 180
Query: 159 -----VQHGHYTTARDMAILSWRIKTDFPQYMH--------YFQIKGLEIKGKKYPNTNW 205
+ + + +A+++ I P Y K + NW
Sbjct: 181 VTSAPDNAVNLASPKHVAMIAREIVRLDPDIRKLATSTHVSYHLTKNYVVNEPTEMTKNW 240
Query: 206 AVGTFLG---ADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALD---RNTRNKVSAS 258
+G+KTG T SG I V+ GA R + + +
Sbjct: 241 PYLINPNHLIIEGLKTGSTPESGAAFTGIIKDASGHEFITVVNGAASYMDEVQRYQKTLN 300
Query: 259 LLSMGFYNKTDRK------KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
+++ +K D + S+ I++ + ++K
Sbjct: 301 IVNAVLADKQATTFSKGTVLSQAKHVDLPRMKQSHMPVKIAQTKTIWVNKGSKLTPEIKV 360
Query: 313 AKDKESHFIDFEKI 326
K +K+
Sbjct: 361 FNVKGKSVKKNQKV 374
>gi|187935277|ref|YP_001886777.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum B str.
Eklund 17B]
gi|187723430|gb|ACD24651.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium botulinum B
str. Eklund 17B]
Length = 425
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 62/305 (20%), Positives = 124/305 (40%), Gaps = 23/305 (7%)
Query: 1 MRQ--FLVIIAMAMLSNIFPFLS-----------IAETNKLPYYTLLDTNTGHVIAENYP 47
M++ L +A+ + ++F S + + + +D TG +I
Sbjct: 1 MKRNLILKTLALTLTISLFAPFSVKSYATENTEQTSPSIQAESALTMDYETGEIIYAKDA 60
Query: 48 DHPWNPASL-TKLMTAYVVFSFLKEKKAMLTTPITISKNAS-EYPPSNSTFKKGSTMTLD 105
D PAS L + F K + T S + + G M D
Sbjct: 61 DSKRYPASTTKLLTGLLLAEKFEKNSEISFTQSAKEQPEYSLNINYMGNKMQVGDKMLAD 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ +K L++ S ND A IA+++ + F + MN +K LG + ++F+ A+G+ HYT
Sbjct: 121 DVMKGLLLFSGNDTAYMIADNVAGSANAFSELMNKKAKELGANNSNFITANGLHDPNHYT 180
Query: 166 TARDMAILSWRIKTDFPQYMHYF-QIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCA 223
TA D+++++ + + + ++I G + N +G G KTG T A
Sbjct: 181 TAYDLSLITKAAFENPWEKETMELKEAPIDINGSRIILENRNLGLGKNGNIAGKTGSTNA 240
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINYIIKD 279
+G + A + + +I V+L + + T+ S+++ + D++ ++
Sbjct: 241 AGGCLAAVYEKDGRKIIGVVLKSRQLDNVDMTKFNDMDSIVNYSYS--ADKQVYKKTNEE 298
Query: 280 FYQQN 284
+
Sbjct: 299 VGTTD 303
>gi|229091482|ref|ZP_04222692.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-42]
gi|228691856|gb|EEL45603.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-42]
Length = 221
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 19/215 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M IA+ + A + L++ N+G ++ E D AS+TK+M
Sbjct: 1 MLTLFCSIAVI-SGSASAETVSAIEVEAGSAILVEANSGKILYEKNADESLAIASMTKMM 59
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSA 116
+ Y+V ++ K + IS+ A + S + T+ + +++ SA
Sbjct: 60 SEYLVHEAVENGKLKWNQKVKISEYAYKISQDRSLSNVPLENGGSYTVKELYEAMVIYSA 119
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------------VQHG 162
N +A+AE + E FV+ MN+ SK G+ F+N+ G+
Sbjct: 120 NGATIALAEEIAGKEVNFVKMMNDKSKEFGMKNYKFVNSTGLTNHDLKGHHPEGTTPDEK 179
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
+ +ARD AIL+ R+ DFP+ + +I
Sbjct: 180 NKMSARDCAILAQRLIQDFPEMLDTAKIPKKHSNR 214
>gi|331084851|ref|ZP_08333939.1| hypothetical protein HMPREF0987_00242 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410945|gb|EGG90367.1| hypothetical protein HMPREF0987_00242 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 323
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 22/249 (8%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--AS 87
L N V+ + PAS TK++TAYV + L+ +T+S+
Sbjct: 75 AAGLFGVNQEQVLYAQNLHNKLYPASTTKVLTAYVALKY-----GNLSDIVTVSRRAVTF 129
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ S ++ +T++ L L++ S ND A+AIAE + + + FV+ MN ++ LG
Sbjct: 130 DVDASVCGLQENDQITMEALLYGLLLHSGNDNAIAIAEHISGSVEAFVELMNEEARKLGA 189
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTD------FPQYMHYFQIKGLEIKGKKYP 201
+ THF N HG+ + HYTTA D+ ++ + Q + ++ ++
Sbjct: 190 TNTHFTNPHGLHEADHYTTAYDLYLIFNECMKNETFLTMISQSSYAATVQNPTSGTRQLT 249
Query: 202 NTNWAVG--------TFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTR 252
T G KTG +G ++ I++++GA D+
Sbjct: 250 WTPSHFYAQGLAIPPQNAVIVGGKTGTEDLAGSCLILLEKDLSGNPYISIVMGAPDKTVL 309
Query: 253 NKVSASLLS 261
SL+S
Sbjct: 310 YNDMTSLIS 318
>gi|229816443|ref|ZP_04446744.1| hypothetical protein COLINT_03496 [Collinsella intestinalis DSM
13280]
gi|229807985|gb|EEP43786.1| hypothetical protein COLINT_03496 [Collinsella intestinalis DSM
13280]
Length = 449
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 58/280 (20%), Positives = 100/280 (35%), Gaps = 28/280 (10%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ++ + G V E D P AS TK+MTA V + +T+
Sbjct: 53 PDILATHAIIMRPD-GSVYYEREADSPIKIASTTKVMTALVALDHCD-----PSETLTVD 106
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--------KFV 135
A+ S K+G T+TL+ AL L+V S ND+A AIA + F+
Sbjct: 107 HAAATVGESCVGLKEGDTLTLEQALTGLMVMSGNDVATAIATHVGGKIDPASADPYGTFI 166
Query: 136 QHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ MN+ + LG + T F N HG+ ++TA D+ + +
Sbjct: 167 KAMNDRAAQLGCTDTLFENPHGLDFGAWVGNLHSTAHDVTRIWAEAWHNEAFRSFACSDA 226
Query: 192 GLEI--------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAV 242
+ N +G G G KTG T +G V + + + +
Sbjct: 227 TEMHVTSADGSARSLPLTVRNKILGR-DGNLGGKTGSTYEAGECFVCTFSREPEGEVYIA 285
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+ G+ R + +L + + + + +
Sbjct: 286 LFGSKGDEGRFNDTLTLANWYYGHFANLPFATSPKQVGGV 325
>gi|115358748|ref|YP_775886.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria AMMD]
gi|115284036|gb|ABI89552.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Burkholderia ambifaria AMMD]
Length = 359
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 50/255 (19%), Positives = 90/255 (35%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + +LD ++G + AS++KLMTA V +
Sbjct: 103 LLASCGYSSRAVRSLHSRAAYVLDVDSGTPLLARNARAVRPIASISKLMTAVVARDADRP 162
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+L S++ + S G+ ++ + ++ S N A A++
Sbjct: 163 LNGVL---RVTSRDRDTIKFTGSRLPIGAELSRRQMFHIALMSSENRAAAALSRDYPGGR 219
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQI 190
FV+ MN ++ LG+ THF G+ + +TA D+A L D
Sbjct: 220 AAFVKAMNREARRLGMRQTHFREPTGL-SPHNVSTAEDLARLVGAAAQDPLIRYFSTDTS 278
Query: 191 KGLEIKGKKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + N G KTGF SG +V + V+LGA
Sbjct: 279 TTVQAGDGELVYVNSDPLVRNGSLPIRLQKTGFINESGHGVVMRMRVKGRRETIVLLGAP 338
Query: 248 DRNTRNKVSASLLSM 262
R + + +
Sbjct: 339 TRAGVSSDAVKIHRW 353
>gi|150015827|ref|YP_001308081.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
NCIMB 8052]
gi|149902292|gb|ABR33125.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium beijerinckii
NCIMB 8052]
Length = 440
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/307 (20%), Positives = 118/307 (38%), Gaps = 11/307 (3%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP--IT 81
K +D TG +I D PAS TKL+T ++ + + T
Sbjct: 45 PNIKAEAALTMDLETGEIIYCKDADSKRYPASTTKLLTGLLLAESKDKADQLEYTKSAKE 104
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ + ++T + G +T D+ +K L++ S ND A IA+++ K F + MN
Sbjct: 105 QPEYSLNLNYMHNTMQPGDKVTSDDIMKGLLLFSGNDTAYVIADNISGDVKSFAELMNKK 164
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGK 198
+K LG + ++F+ +G+ HYTTA D++I+ + + K +
Sbjct: 165 AKELGANNSNFVTPNGLHDPNHYTTAYDLSIIMKAAFANPWERETMELEKAPITLKNSRI 224
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNK 254
N N +G G KTG T +G + + + LI ++L + + T+
Sbjct: 225 ILENRNLTLGKN-GNLAGKTGTTNEAGGCLATVYDRDGRQLIGIVLKSRQIDNADMTKFN 283
Query: 255 VSASLLSMGF-YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
+++ + K K + + + ++ + K + N
Sbjct: 284 DMDAIMDYSYGAKKEVYKANGESVGTADVKYKPFILFGPTKTISVPIKLTQDVNYYKNAI 343
Query: 314 KDKESHF 320
D ES
Sbjct: 344 NDSESQI 350
>gi|325661590|ref|ZP_08150214.1| hypothetical protein HMPREF0490_00948 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472117|gb|EGC75331.1| hypothetical protein HMPREF0490_00948 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 323
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 22/249 (8%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--AS 87
L N V+ + PAS TK++TAYV + L+ +T+S+
Sbjct: 75 AAGLFGVNQEQVLYAQNLHNKLYPASTTKVLTAYVALKY-----GNLSDIVTVSRRAVTF 129
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ S ++ +T++ L L++ S ND A+AIAE + + + FV+ MN ++ LG
Sbjct: 130 DVDASVCGLQENDQITMEALLYGLLLHSGNDNAIAIAEHISGSVEAFVELMNEEARKLGA 189
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------HYFQIKGLEIKGKKYP 201
+ THF N HG+ + HYTTA D+ ++ + + ++ ++
Sbjct: 190 TNTHFTNPHGLHEADHYTTAYDLYLIFNECMKNETFLTMISRSSYAATVQNPTSGTRQLT 249
Query: 202 NTNWAVG--------TFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTR 252
T G KTG +G ++ I++++GA D+
Sbjct: 250 WTPSHFYAQGLAIPPQNAVIVGGKTGTEDLAGSCLILLEKDLSGNPYISIVMGAPDKTVL 309
Query: 253 NKVSASLLS 261
SL+S
Sbjct: 310 YNDMTSLIS 318
>gi|309775554|ref|ZP_07670554.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
bacterium 3_1_53]
gi|308916648|gb|EFP62388.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
bacterium 3_1_53]
Length = 337
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 19/269 (7%)
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
D + AS++K+MTA + K L T+ + ++ S+ K+G T+TL
Sbjct: 47 KNKDDKQSVASISKIMTAVIAIEHGK-----LDEAFTVDEEINKAYGSSVYLKQGQTVTL 101
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHG 162
+ L L+++S ND AV IA+ + +++ FV+ MN + +G+S T F N G+ G
Sbjct: 102 RDLLYALMLRSGNDAAVEIAKHVSGSQEAFVEAMNQKAAEIGMSNTTFSNPSGLDEEDGG 161
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+ +TA DMAIL + ++ N N + + G KTGFT
Sbjct: 162 NISTANDMAILMSYAMKNKEFRTITGSKYYTTDWNMRWKNKNRLLFDYPFTIGGKTGFTK 221
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
+G +V +A I V L R F+ + + +
Sbjct: 222 KAGRTLVTAAEHDGVESIVVTL-------REGD-----DFAFHEQKHTEVFQKLDVVTIM 269
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMK 311
+ S V + +V T K ++ + K
Sbjct: 270 KKGSYTVNGRTFQVPETVKVTLHKDGSDK 298
>gi|323341764|ref|ZP_08081997.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
[Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464189|gb|EFY09382.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
[Erysipelothrix rhusiopathiae ATCC 19414]
Length = 434
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/320 (19%), Positives = 113/320 (35%), Gaps = 21/320 (6%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ Y L+D TG +AE D +PAS+TK++T L + L T TI
Sbjct: 34 DLQSQNYILVDPKTGQTLAEKNHDASIHPASITKVLTVITAIEAL--GETSLDTLYTIPP 91
Query: 85 NAS---EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ S + F++G +TL++ L +++ S D AI+ L +K V MN
Sbjct: 92 EVFEGLDPIASVAGFQEGDQVTLNDLLHGIMLPSGADATRAISSYLTHDPEKLVVKMNRL 151
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
++ +G+ +HF+N G+ H TT D+A+L + Y L +P
Sbjct: 152 AQRIGMKNSHFVNTSGLDDPKHLTTLDDLALLLRYALENPTFESIYKTETYLTSSTPSHP 211
Query: 202 NTN---------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
N + G K+G T + + + A QS I + A N
Sbjct: 212 NGIELTNESLSVAHQKGYTMIKGAKSGTTDLAERALSSVAEDASQSYIFISTNAPFENRL 271
Query: 253 NKVSA---SLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVPNISEEVCTTQKEIIN 305
++ N + E+ + + K+
Sbjct: 272 YTQVIDHGTVYQHVIENYQYAPLLYKNTTIQTIPIKHGRTDFEIWFKDDIMSYLPKDYDP 331
Query: 306 YNTQMKEAKDKESHFIDFEK 325
+ +++ ++ K
Sbjct: 332 KDIKIEFIPSQKEFEAPLPK 351
>gi|118444189|ref|YP_877702.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
gi|118134645|gb|ABK61689.1| D-alanyl-D-alanine carboxypeptidase [Clostridium novyi NT]
Length = 443
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 83/366 (22%), Positives = 133/366 (36%), Gaps = 43/366 (11%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH-PWNPASLTKLMTAYVVFSFLKE 71
+ F ++D TG VI D P PAS TKL+TA ++ K
Sbjct: 19 CTTAFADNLSEPNIVGKSAIVIDAKTGEVIYAKNADASPMYPASTTKLLTALLLAENKKP 78
Query: 72 -KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
T + K G TM+ D+A+K L++ SANDIA IA+++
Sbjct: 79 TDMLTYTEGSIKQPEYTLRSFLKGKLKVGDTMSADDAMKGLLLHSANDIASMIADNVGGN 138
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--HGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ F + MN+ K LGL THF+ +G+ HYT+A D++I+ ++
Sbjct: 139 TENFAKMMNDKVKQLGLKNTHFVTPNGLDSGISDHYTSAYDLSIIGKAAYSNEWIRNTMN 198
Query: 189 QIKGLEIKGKKY----PNTNWAVGT--------------------FLGADGMKTGFTCAS 224
K N N VGT G KTGFT +
Sbjct: 199 LKKSKVELSNGILGYPQNRNKLVGTVLDSKFLSTIGNISKNIPESNAVCVGGKTGFTTKA 258
Query: 225 GFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNK-----------TDR 270
G +VA + ++ LI V++ + + A +++ ++ K
Sbjct: 259 GRCLVAMFNKDNRVLIGVVMKSVYDKNDTYVFNDMAKIMNFAYFQKPVPLYKANIELKTL 318
Query: 271 KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+K F N + E+V E+ N + + K S K T +
Sbjct: 319 PIQYRPLKFFGPVKTINVPVTLKEDVTYYNNELNNSYNKTEFELPKLSIG-QLGKNTSVG 377
Query: 331 NKITKK 336
+ K+
Sbjct: 378 KLVLKE 383
>gi|120556509|ref|YP_960860.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Marinobacter
aquaeolei VT8]
gi|120326358|gb|ABM20673.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Marinobacter aquaeolei VT8]
Length = 308
Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/258 (20%), Positives = 93/258 (36%), Gaps = 8/258 (3%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+A+ A + ++ + D P AS+TKLMTA VV
Sbjct: 14 LAVSGQSLASPERAPNLASVQAAAAEVGKEGLLFGKHADRPVPVASITKLMTALVVVESG 73
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
++ LT ++ + S + GS + + L++ ++ S N A +A
Sbjct: 74 QDMDEWLTFEE---RHVEAAANAWSRIRVGSQLRRRDVLRIALMSSENFAAYTLARVYPG 130
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
FV MN +K LG+ T F++ G+ T A + + +K +
Sbjct: 131 GFDGFVAAMNAKAKALGMLQTRFVDPTGLSTDNVSTAADLVILARAALKHPEIREASTTG 190
Query: 190 IKGLEIKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
E + +Y NTN V KTG+ +G +V + +I V+L
Sbjct: 191 YYRAEFRKPRYSLSFGNTNALVHRDSWGVSLSKTGYLTEAGRCLVMVSEMNGTPVITVLL 250
Query: 245 GALDRNTRNKVSASLLSM 262
+L + + +
Sbjct: 251 DSLGTRSPMGDAGRIKRW 268
>gi|311696252|gb|ADP99125.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [marine
bacterium HP15]
Length = 271
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/238 (17%), Positives = 88/238 (36%), Gaps = 10/238 (4%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ +I D AS+TK+MTA VV + L +T + +
Sbjct: 3 AAVAVAGDNKLIFGKNADRSVPIASVTKVMTALVVLESGEP----LDEWLTFHERHTPAA 58
Query: 91 PSNSTFKKGS-TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+ + + M + L++ ++ S N A +A + F++ MN + LG++
Sbjct: 59 ANAYSRIRIDSEMRRKDVLRIALMSSENFAAYTLARNHPGGFDAFIEAMNAKAAALGMTG 118
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNW 205
T F++ G+ T A + +++ + + + +Y NTN
Sbjct: 119 TRFVDPTGLSSENLSTAADLVKLVNAAADYPEIREYSTTGYFRGQFRQPRYSLSFGNTNA 178
Query: 206 AVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
V KTG+ +G +V + + ++ V+L +L + + +
Sbjct: 179 LVHRDSWGVALSKTGYLSEAGRCLVMISKMNGKEVVTVLLDSLGTRSPMGDAGRIKRW 236
>gi|164686848|ref|ZP_02210876.1| hypothetical protein CLOBAR_00444 [Clostridium bartlettii DSM
16795]
gi|164604238|gb|EDQ97703.1| hypothetical protein CLOBAR_00444 [Clostridium bartlettii DSM
16795]
Length = 336
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 65/298 (21%), Positives = 110/298 (36%), Gaps = 43/298 (14%)
Query: 1 MR--QFLVIIAMAMLSNIFPF------------------LSIAETNKLPYYTLLDTNTGH 40
M+ + + + + M+ I I+ Y ++D N+G
Sbjct: 5 MKGIKKITALFLIMILTISTSGFVNKVESAQVSKSQTNDSPISMGVSAHAYVVMDANSGE 64
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYPPSNSTFK 97
+I D PAS TKL+TA V L I + + N + S +
Sbjct: 65 IIMSQDADKKIYPASTTKLLTAVVAIENC-----NLDREIEVKQAALNKVDVESSIVGLR 119
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
GST T++ L +L++ SA D A IAE + + + F MN +K +G++ ++F N G
Sbjct: 120 AGSTYTMEQLLYMLLIVSAGDAAEVIAEEVAGSSEAFATMMNEKAKQIGMTDSYFDNPVG 179
Query: 158 VVQHGH---YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK-------YPNTNWAV 207
+ H + ++TA D+A L+ ++ N
Sbjct: 180 MDWHSNAKIHSTAHDIAKLTQYAMANYEIRKIVRHSFYTVDNFYNGKSITLGSSNGFLRK 239
Query: 208 GTFLG----ADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVSASLL 260
+ G KTG T +GF + +A + +I G R+ K LL
Sbjct: 240 RKYADNLFTVIGSKTGTTDKAGFALTTTAKDNEGREVICAFFGNSTRDKMYKDINRLL 297
>gi|222152529|ref|YP_002561704.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis 0140J]
gi|222113340|emb|CAR40938.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus uberis
0140J]
Length = 393
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 60/348 (17%), Positives = 123/348 (35%), Gaps = 54/348 (15%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET-------------------NKLPYYTLLDTNTGHV 41
+++ L+ +++ L+ + E NK ++D G +
Sbjct: 2 IKKILLFLSIFALTISTIPVIANEKDSDDIMTITRKAGYSVKDINKPKSSIVIDAKNGDI 61
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG-- 99
+ E+ + +PAS++KL T Y++F L + K L T IT +
Sbjct: 62 LWEDNINEHRDPASMSKLFTLYLLFEDLSKGKLSLETTITATDRDQAISGIYEISNNKII 121
Query: 100 ---STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
D + S + F+ +N ++ LG+ T F NA
Sbjct: 122 SGVEYPIKDLIFMTAVPSSNAATVMIANYLSNNDASAFIDRINQKARELGMHDTFFSNAS 181
Query: 157 GVVQHG---------------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
G + T+A D+AIL++ ++P+ + Y + ++
Sbjct: 182 GAAAEAFKGLYNPDKYDLSAPNQTSAHDLAILTYHFLKEYPEIVTYTNQRIVKTMVGTPY 241
Query: 202 NTNWAVGTFL---------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT- 251
+ + G DG+KTG + + FN + + + + LI +++G D +
Sbjct: 242 EEEFTTYNYSLPGDRYGMTGVDGLKTGSSPSGAFNAIVTTKRNQKRLITIVMGVGDWSDQ 301
Query: 252 -----RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
R+ +L F + + I Y ++ S+ P+ +
Sbjct: 302 DGEYYRHPFINALTEKAFSDLKQKNNIPYSNLFHEKKQTSSGRPSAKK 349
>gi|171315671|ref|ZP_02904905.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria MEX-5]
gi|171099203|gb|EDT43976.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria MEX-5]
Length = 359
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/255 (20%), Positives = 90/255 (35%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ T +LD ++G + AS++KLMTA V +
Sbjct: 103 LLASCGYSPRAVRTLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRP 162
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+L S++ + S G+ ++ + ++ S N A A++
Sbjct: 163 LNGVL---RVTSRDRDTIKFTGSRLPIGAELSRRQMFHIALMSSENRAAAALSRDYPGGR 219
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQI 190
FV+ MN ++ LG+ THF G+ + +TA D+A L D
Sbjct: 220 AAFVKAMNREARRLGMRQTHFREPTGL-SPHNVSTAEDLARLVGAAAQDPLIRYFSTDTS 278
Query: 191 KGLEIKGKKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + N G KTGF SG +V + V+LGA
Sbjct: 279 TTVQAGDGELLYVNSDPLVRNGRLPIRLQKTGFINESGHGVVMRMRVKGRRETIVLLGAP 338
Query: 248 DRNTRNKVSASLLSM 262
R + + +
Sbjct: 339 TRAGVSSDALKIHRW 353
>gi|238028296|ref|YP_002912527.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
glumae BGR1]
gi|237877490|gb|ACR29823.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
glumae BGR1]
Length = 376
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 56/256 (21%), Positives = 102/256 (39%), Gaps = 10/256 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + ++D +G V+ E + + AS++KLMTA V
Sbjct: 120 LLASCGYTPATRRLLHSQAIYVIDERSGTVLLERHANRIKPIASVSKLMTAVVSLD---- 175
Query: 72 KKAMLTTPITISKNASEYPPSN-STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ LT + +S + + S K GS ++ + L + ++ S N A A++
Sbjct: 176 RHVPLTHRLRVSVSDRDTIKFTGSRLKVGSVLSRRDMLHIALMSSENRAAAALSRDYPGG 235
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY---MHY 187
F+ MN ++ LG++ T F+NA G+ + +TARD+A L +
Sbjct: 236 RPAFIAAMNRKARMLGMTNTRFVNATGL-SPQNVSTARDLARLLSAAARYPAIRTFSTDH 294
Query: 188 FQIKGLEIKGKKYPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
Q+ Y N+N G KTGF +G +V G + + V+L A
Sbjct: 295 AQVVHPGRGQLSYVNSNALVRGGDTRIRLQKTGFINEAGHCLVIRYRIGARPVDVVLLDA 354
Query: 247 LDRNTRNKVSASLLSM 262
+ + +
Sbjct: 355 PGPRDHVADAIRIRNW 370
>gi|291550390|emb|CBL26652.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus torques L2-14]
Length = 343
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 63/251 (25%), Positives = 100/251 (39%), Gaps = 22/251 (8%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--S 87
L + N V PAS TKLMTAY+ F + + +T+S +
Sbjct: 92 AAGLFNLNDKTVEYGYKLYDKLYPASTTKLMTAYLAFKY-----GNMDDIVTVSDSVSSF 146
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ G T+TL + L L+++S ND VAIAE + + + F + MN+ +K LG
Sbjct: 147 ASDEVVCNLQPGDTVTLYDLLCGLLLRSGNDCGVAIAEHISGSVEAFAELMNSEAKALGA 206
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTD---FPQYMHYFQIKGLEIKGKKYPNTN 204
+ +HF+N HG+ HYTTA D+ ++ D L +
Sbjct: 207 TGSHFVNPHGLHNENHYTTAYDLYLIFNACIQDQRFMDIISMDSYTMNLTGADGTTRTFD 266
Query: 205 WAVGTFLG-----------ADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTR 252
+ G KTG T +G ++ + I++I+GA D+
Sbjct: 267 VVPTNYYSSGKINAPEGIRVFGGKTGTTDEAGCCVILYSEDLEKNPYISIIMGAEDKGFL 326
Query: 253 NKVSASLLSMG 263
+ LL G
Sbjct: 327 YQEMNRLLEAG 337
>gi|187735971|ref|YP_001878083.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Akkermansia
muciniphila ATCC BAA-835]
gi|187426023|gb|ACD05302.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Akkermansia
muciniphila ATCC BAA-835]
Length = 323
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 58/329 (17%), Positives = 118/329 (35%), Gaps = 47/329 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ + + F + + P Y ++ N+G ++ + + ASL+++
Sbjct: 1 MKKLSLFLLTLACVFQFSAQAQ----QRPSYIAIEANSGKLLFSSNAEEKRPVASLSQVA 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASE-YPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
TA V ++ + L T I + + A + + G +TL +AL ++ S N
Sbjct: 57 TAMVALDWVARTRLPLDTFIAVPQEAFGLRAGNPMDLQPGDRLTLRDALYSTLLGSDNVS 116
Query: 120 AVAIAESLCK----------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT--- 166
A+ +A + + FV MNN +++L ++ T F HG+ +T
Sbjct: 117 ALTVASFVGRDLVSRRGGGAPIAAFVAEMNNLARSLRMAKTRFTAPHGLDAGNSVSTSCA 176
Query: 167 -------ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
M ++ Q + N N + G DG+K G
Sbjct: 177 LDMALLGVYSMQNPAFCYIVSQASRRIEVQSQTKGRTMYDISNNNRLMSA-SGVDGIKAG 235
Query: 220 FTCASGFNIVASAIQG---------------DQSLIAVILGALDRNTRNKVSASLLSMGF 264
+ A+G ++ S + Q +I +LG+ R ++ +++ G+
Sbjct: 236 TSRAAGPCLLLSVTRNAISRRSPQTGTEVIYPQRMIIAVLGSAS---RYSLAREMMNTGW 292
Query: 265 Y---NKTDRKKINYIIKDFYQQNLSNEVP 290
N K+F Q + +
Sbjct: 293 RVWENWQASGMDMKDPKEFVQLPVKSAPQ 321
>gi|170700087|ref|ZP_02891109.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria IOP40-10]
gi|170135001|gb|EDT03307.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria IOP40-10]
Length = 359
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 50/255 (19%), Positives = 90/255 (35%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + +LD ++G + AS++KLMTA V +
Sbjct: 103 LLASCGYSPRAVRSLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRP 162
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+L S++ + S G+ ++ + ++ S N A A++
Sbjct: 163 LNGVL---RVTSRDRDTIKFTGSRLPIGAELSRRQMFHIALMSSENRAAAALSRDYPGGR 219
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQI 190
FV+ MN ++ LG+ THF G+ + +TA D+A L D
Sbjct: 220 AAFVKAMNREARRLGMRQTHFREPTGL-SPHNVSTAEDLARLVGAAAQDPLIRYFSTDTS 278
Query: 191 KGLEIKGKKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + N G KTGF SG +V + V+LGA
Sbjct: 279 TTVQAGDGELLYVNSDPLVRSGSLPIRLQKTGFINESGHGVVMRMRVKGRRETIVLLGAP 338
Query: 248 DRNTRNKVSASLLSM 262
R + + +
Sbjct: 339 TRAGVSSDALKIHRW 353
>gi|260587729|ref|ZP_05853642.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Blautia hansenii DSM
20583]
gi|260541994|gb|EEX22563.1| serine-type D-Ala-D-Ala carboxypeptidase DacF [Blautia hansenii DSM
20583]
Length = 301
Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 86/238 (36%), Gaps = 12/238 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
LLD G ++ + PASLTK+MT + L + + I
Sbjct: 47 ELYSEAAILLDEE-GQILGRKNSEKKIYPASLTKIMTVLLSIEKLDNIREITVLREEIFP 105
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
S + F G +T + L ++ S + VA+AE C +EK+FV MN +K
Sbjct: 106 ELYAQDASMAGFLPGEKVTYRDLLYGAMLPSGAECCVALAEGSCGSEKEFVSEMNKKAKK 165
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD-----------FPQYMHYFQIKGL 193
LG+ THF N G+ HYTT D++ L + + +G
Sbjct: 166 LGMKNTHFTNTTGLHDDNHYTTVEDLSRLLCYAMKNQDFSKIFTAFSYSVPATNKHPEGF 225
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
A G KTG+T +G + +A + + A +
Sbjct: 226 TFFSTLSQELQKAGVKDSCILGGKTGYTSNAGLCLATAAEINGKKYFFITAHAQGSHN 283
>gi|77411815|ref|ZP_00788150.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae
CJB111]
gi|77162150|gb|EAO73126.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae
CJB111]
Length = 393
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 76/348 (21%), Positives = 140/348 (40%), Gaps = 54/348 (15%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------------------NKLPYYTLLDTNTGHVI 42
M + +V +LS AE NK ++D N GH++
Sbjct: 1 MPKLIVSFLCILLSLTCVNSVQAEEHKDIMQITREAGYDVKDINKPKASIVID-NKGHIL 59
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKK 98
E+ D +PAS++K+ T Y++F L + K L T +T ++ SN+
Sbjct: 60 WEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVTATETDQAISKIYEISNNNIHA 119
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
G + + + V S+N + IA F++ +N T+K LG++ THF N G
Sbjct: 120 GVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRINETAKKLGMTKTHFYNPSG 179
Query: 158 ---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ TTARD++IL++ +P ++Y + ++
Sbjct: 180 AVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDILNYTKYPEVKAMVGTPYE 239
Query: 203 TNWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-- 251
+ + G DG+KTG + ++ FN + +A + + LI V+LG D +
Sbjct: 240 ETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQNTRLITVVLGVGDWSDQD 299
Query: 252 ----RNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
R+ +L+ GF + + ++K + + +I E+
Sbjct: 300 GEYYRHPFVNALVEKGFKDAKNISSKTPVLKAVKPKKEVTKTKSIQEQ 347
>gi|210634508|ref|ZP_03298135.1| hypothetical protein COLSTE_02057 [Collinsella stercoris DSM 13279]
gi|210158809|gb|EEA89780.1| hypothetical protein COLSTE_02057 [Collinsella stercoris DSM 13279]
Length = 450
Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats.
Identities = 65/342 (19%), Positives = 120/342 (35%), Gaps = 36/342 (10%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
P+ +L + G E D P AS+TK+MTA V L+ +T+
Sbjct: 53 PDISAPHAMILGQD-GTAYFERDADDPIKIASVTKVMTALVALEHCD-----LSDTVTVD 106
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--------SLCKTEKKFV 135
A+ S+ +G T+T+++AL L+V S ND A AIA + F+
Sbjct: 107 HAAATVGESSLGLLEGDTLTMEDALTGLMVMSGNDAATAIATTAGAQIDPTSDDPYAVFI 166
Query: 136 QHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ MN +K LG + T F N HG+ ++T RD+ + + +
Sbjct: 167 EAMNEKAKELGCTDTVFENPHGLDFDAWAGNLHSTTRDITKVFAAAMQNEDFRAIDNSDR 226
Query: 192 GL--------EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAV 242
+ N G G G KTG T +G V + + +
Sbjct: 227 TSIPVTSADGSARTVNLVVRNQIHGQ-DGNIGGKTGTTDEAGNCFVGAFTRDLGGEVYVA 285
Query: 243 ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQK- 301
I GA R + +L + + + N +K + + + +
Sbjct: 286 IFGAQTNEERFADTLTLANWYYDHMATVPFANTPVKRNGIPLVGEAPCSAWCDQTAATQL 345
Query: 302 -------EIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ + +++++ + + E+ + K+
Sbjct: 346 EDADATFAVFSLGDELEQSIEFDELSGAVEQGDDVGTITFKQ 387
>gi|325678286|ref|ZP_08157914.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
gi|324110049|gb|EGC04237.1| serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus albus 8]
Length = 401
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 64/312 (20%), Positives = 122/312 (39%), Gaps = 22/312 (7%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
L+D ++ +IA D PASLTKLMT V + + A
Sbjct: 94 DATFSTAVLMDADSNELIAGLKYDKKIYPASLTKLMTLLVAVENIDDMNAKYKFTDKDID 153
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ S + + G T+++ L I+ S D + +A ++ +EK FV+ MN+ +
Sbjct: 154 PLIDENASRAGYVAGDEATMEDLLYAAILPSGADGTLGLANAIAGSEKDFVKLMNDKAAE 213
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT- 203
LGL+ T+F+NA G+ HYTTA+DMA+++ + F K +++ +
Sbjct: 214 LGLTDTNFVNASGLHDKQHYTTAQDMAVITRACLQNDVCRKVMFAEKWTTKPTQEFEDGI 273
Query: 204 ------NWAVGTF------LGA-----DGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ G + GA +G KTGFT S F + + I + +
Sbjct: 274 ELDSILHSRFGGYFIDADQDGAEDAELEGGKTGFTDESMFCLSTVVKYNGKEYICITTKS 333
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
+ + + + N + D + +++ + T +
Sbjct: 334 DGDLIATEDAIMV----YENYLPGAVGTPVTADESSEAENSDESQADDNNVITITDDTAS 389
Query: 307 NTQMKEAKDKES 318
+++ ++ E+
Sbjct: 390 SSKPAADENYEA 401
>gi|188588906|ref|YP_001921735.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium botulinum
E3 str. Alaska E43]
gi|251779044|ref|ZP_04821964.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|188499187|gb|ACD52323.1| D-alanyl-D-alanine carboxypeptidase family [Clostridium botulinum
E3 str. Alaska E43]
gi|243083359|gb|EES49249.1| D-alanyl-D-alanine carboxypeptidase family protein [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 425
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 63/305 (20%), Positives = 124/305 (40%), Gaps = 23/305 (7%)
Query: 1 MRQ--FLVIIAMAMLSNIFPFLS-----------IAETNKLPYYTLLDTNTGHVIAENYP 47
M++ L +A+ + ++F S + + + +D TG +I
Sbjct: 1 MKRNLILKTLALTLTISLFAPFSVKSYATENTEQTSPSIQAESALTMDYETGEIIYAKDA 60
Query: 48 DHPWNPASL-TKLMTAYVVFSFLKEKKAMLTTPITISKNAS-EYPPSNSTFKKGSTMTLD 105
D PAS L + F K + T S + + G M D
Sbjct: 61 DSKRYPASTTKLLTGLLLAEKFEKNSELSFTQSAKEQPEYSLNINYMGNRMQVGDKMLAD 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ +K L++ S ND A IA+++ + F MN +K LG + T+F+ A+G+ HYT
Sbjct: 121 DVMKGLLLFSGNDTAYMIADNVAGSSDAFSALMNKRAKELGANNTNFITANGLHDPNHYT 180
Query: 166 TARDMAILSWRIKTDFPQYMHYF-QIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCA 223
TA D+++++ + + + ++I G + N +G G KTG T A
Sbjct: 181 TAYDLSLITKAAFDNPWERETMELKESPIDINGSRIILENRNLGLGKNGNIAGKTGLTNA 240
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDRKKINYIIKD 279
+G + A + + ++ V+L + + T+ S+++ + TD++ ++
Sbjct: 241 AGGCLAAVYEKDGRKIVGVVLKSRQIDNVDMTKFNDMDSIINYSYS--TDKQVYKKANEE 298
Query: 280 FYQQN 284
+
Sbjct: 299 VGTTD 303
>gi|221209869|ref|ZP_03582850.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
multivorans CGD1]
gi|221170557|gb|EEE03023.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
multivorans CGD1]
Length = 364
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 49/255 (19%), Positives = 91/255 (35%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + +LD ++G + AS++KLMTA V +
Sbjct: 108 LLASCGYNPRAVRSLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRP 167
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+L + + S + GS ++ + + ++ S N A A++
Sbjct: 168 LNGVLRVTA---NDRDTIKFTGSRLQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGR 224
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM----HY 187
FV+ MN ++ LG+ THF G+ + +TA D+A L D
Sbjct: 225 AAFVKAMNREARRLGMRHTHFREPTGL-SPHNVSTAEDLARLVDAAAQDPLIRYFSTDRS 283
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + + + L KTGF SG +V + V+LGA
Sbjct: 284 TTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRTTVVLLGAP 343
Query: 248 DRNTRNKVSASLLSM 262
R + + +
Sbjct: 344 TRAGVSSDAIKIHRW 358
>gi|283769437|ref|ZP_06342335.1| serine-type D-Ala-D-Ala carboxypeptidase [Bulleidia extructa W1219]
gi|283103962|gb|EFC05347.1| serine-type D-Ala-D-Ala carboxypeptidase [Bulleidia extructa W1219]
Length = 315
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 55/231 (23%), Positives = 96/231 (41%), Gaps = 5/231 (2%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ K +Y LLD G V+ E PASLTK+M YV + +++K+ +
Sbjct: 26 QNTKSSHYLLLDLEQGEVLEEKGKSEKIYPASLTKMMVVYVALNHIEDKQKTAIISPNLL 85
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
K + + S + + ++ ++ L + + S D ++ +A++L T FVQ MN +K
Sbjct: 86 KELRQQGAAISNYPSQTPISYEDLLYGIALPSGADCSITLAKALFPTTDAFVQAMNQEAK 145
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL-----EIKGK 198
LG+ +HF N G+ HYTT D++ + ++ IK +
Sbjct: 146 QLGMLHSHFDNVTGLHSPNHYTTLEDLSRFLKVALKNQHFRNYFSAIKYTSKTGITLSHT 205
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
Y + G G KTG+T +G + Q + + G
Sbjct: 206 LYRDIQKTGLKIPGYQGSKTGYTAQAGHCLALWFNQKGHPFLYLATGGPGD 256
>gi|238917030|ref|YP_002930547.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC
27750]
gi|238872390|gb|ACR72100.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium eligens ATCC
27750]
Length = 415
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 56/386 (14%), Positives = 123/386 (31%), Gaps = 60/386 (15%)
Query: 1 MRQF------LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
M+ F ++++++ + P + A Y L+D+++G +++ + + A
Sbjct: 1 MKSFKNFSIIILVLSLLVCCIFCPVTTQAAGLYSKYSVLIDSDSGRILSGSNETTAVSMA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEYPPSNSTFKKGSTMTLDNALKLL 111
S TK+MT + + + T+ S + + +
Sbjct: 61 STTKIMTLIIALENCDKNFVVTTSAYAASMPDVQLNAVTGEQFIINDLYYSLMLESHNDS 120
Query: 112 IVKSANDIAVAIAESLCKTEKK----------------------------FVQHMNNTSK 143
V A + A + + F MN +
Sbjct: 121 AVIIAENAAYYLLCKNPSLRSETPFINNYNYDSSFLSEINHEQSEILVHIFTGLMNEKAD 180
Query: 144 NLGLSATHFMNAHGVVQHG----HYTTARDMAILSWRIKTDFPQYM---HYFQIKGLEIK 196
++ LS T+++ +G+ H+TTA D+A + +
Sbjct: 181 DILLSDTYYITPNGLDAEDNYSFHHTTAYDLAKTMAYCINNEDFLYITQTVSKTISDTTG 240
Query: 197 GKKYP--NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNT 251
Y N N + G KTGFT +G+ V + +++L +L ++N
Sbjct: 241 RYHYQLNNKNRLLNPNEGIISGKTGFTNKAGYCYVCAYKDKNRTLCIALLACGWPPNKNY 300
Query: 252 RNKVSASLLSMGFYNKTDRKKIN-----YIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
+ + L+++G +K N YI + + +P+ + E + +N
Sbjct: 301 KWSDANYLIALG-KKYNKQKYFNCEYTFYIPVSKGKYSFCELIPDSAVEFLACDDDSVNI 359
Query: 307 NTQMKEAKDKESHFIDFEKITLLKNK 332
+ E+ +
Sbjct: 360 QIDI-----PETLTAPVNSAQIYGTI 380
>gi|225567960|ref|ZP_03776985.1| hypothetical protein CLOHYLEM_04033 [Clostridium hylemonae DSM
15053]
gi|225163248|gb|EEG75867.1| hypothetical protein CLOHYLEM_04033 [Clostridium hylemonae DSM
15053]
Length = 311
Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats.
Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 18/268 (6%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + + P +T L L D + V PAS TK+MTA V
Sbjct: 40 LCVTAKDVPLADAPDTGSLSAAALFDVDKSDVDFAYNVHERLYPASTTKIMTALVAIKNA 99
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+T +++ K G +TL+ L L++ S ND AVAIA+ +
Sbjct: 100 DLSDV-VTVGADADESSFAADEQTCGLKAGDRLTLEALLNGLLLYSGNDNAVAIADYVGG 158
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+ + F + MN + L + +HF+N++G+ HYTTA D+ ++ +++ +
Sbjct: 159 SMEGFAEMMNEEAARLMATESHFLNSNGLHNEDHYTTAYDLYLIFNECI-KHEEFLDIIR 217
Query: 190 IKGLEI------KGKKYPNTNWAVGTFLG---------ADGMKTGFTCASGFNIVASAIQ 234
K K+ LG G KTG T +G ++ +
Sbjct: 218 AKSYTADITGADGNKRQITWEPTSFYALGEAALPQNATIIGGKTGTTKEAGNCLILLSED 277
Query: 235 GD-QSLIAVILGALDRNTRNKVSASLLS 261
G + I++++GA + + L+
Sbjct: 278 GQSRPFISIVMGADTKAILYEDMTGLIE 305
>gi|221196175|ref|ZP_03569222.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
multivorans CGD2M]
gi|221202849|ref|ZP_03575868.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
multivorans CGD2]
gi|221176783|gb|EEE09211.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
multivorans CGD2]
gi|221182729|gb|EEE15129.1| D-alanyl-D-alanine carboxypeptidase family protein [Burkholderia
multivorans CGD2M]
Length = 364
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 49/255 (19%), Positives = 91/255 (35%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + +LD ++G + AS++KLMTA V +
Sbjct: 108 LLASCGYNPRAVRSLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRP 167
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+L + + S + GS ++ + + ++ S N A A++
Sbjct: 168 LNGVLRVTA---NDRDTIKFTGSRLQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGR 224
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM----HY 187
FV+ MN ++ LG+ THF G+ + +TA D+A L D
Sbjct: 225 AAFVKAMNREARRLGMRHTHFREPTGL-SPHNVSTAEDLARLVDAAAQDPLIRYFSTDRS 283
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + + + L KTGF SG +V + V+LGA
Sbjct: 284 TTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRTTVVLLGAP 343
Query: 248 DRNTRNKVSASLLSM 262
R + + +
Sbjct: 344 TRAGVSSDAIRIHRW 358
>gi|153952688|ref|YP_001393453.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium kluyveri
DSM 555]
gi|146345569|gb|EDK32105.1| Predicted D-alanyl-D-alanine carboxypeptidase precursor
[Clostridium kluyveri DSM 555]
Length = 310
Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 56/247 (22%), Positives = 95/247 (38%), Gaps = 17/247 (6%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ P L+ ++ + + PASLTK+MTA V L K +
Sbjct: 47 STVSISPDKLNSPNVILIRLKDHAILMQKNSEEKIYPASLTKIMTAIVAIENLPNLKEEI 106
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ + E S + F+ G ++ + L ++ S + + +A + +E+ FV+
Sbjct: 107 RLTNSTFQRLYEADASMTGFQPGEKVSAIDLLYGALLPSGAESCIGLANQIAGSEQGFVK 166
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN + +LG+ THF N G+ HYTT ++A+L + + +
Sbjct: 167 MMNQKAADLGMDNTHFENVTGIHNENHYTTVENLAVLLSYALQNDTFRDIFTSSRHSTQP 226
Query: 197 GKKYP--------------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
K+P N N G G KTG+T G + + A G Q I +
Sbjct: 227 TNKHPDGITFYSTMFEELDNQNIIDGE---ILGGKTGYTDEVGLCLASLAKVGRQEYILI 283
Query: 243 ILGALDR 249
GA
Sbjct: 284 SAGAKGD 290
>gi|330684640|gb|EGG96344.1| serine-type D-Ala-D-Ala carboxypeptidase [Staphylococcus
epidermidis VCU121]
Length = 412
Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 71/368 (19%), Positives = 145/368 (39%), Gaps = 50/368 (13%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYY---------------TLLDTNTGHVIAE 44
M++ F ++ + M + AE + + ++ T G ++ +
Sbjct: 1 MKKVFTSLMMIMMCLVLISPTVFAEQSPVDVAKQEHQDIDKQYNPKGMIVTTKDGQILYD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGS 100
+ + +PAS TKLMT +V+ +K K + + I+ + + K+G+
Sbjct: 61 YHGNTQVDPASTTKLMTMNLVYDDIKSGKIKMNDKVKITSRYEKMSELPNLTTFPLKEGT 120
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG--- 157
T+T++ LK ++S+N + +AE + + KF MN +K+LG+ T F N G
Sbjct: 121 TVTINQLLKQAALESSNAATLVLAEHIDGSSSKFTDRMNQKAKDLGMKDTKFTNPSGANN 180
Query: 158 -----------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204
+TTARDM++LS I P + ++ + ++ NTN
Sbjct: 181 KILKPYEPKSYKDDTISHTTARDMSLLSNHILNAHPDVLKITKLSKDKQSNQELHNTNTS 240
Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL------DRNTRNKVS 256
DG+KTG T +G+N+ +A + ++ I ++ R K++
Sbjct: 241 LPNEADGMKDVDGLKTG-TSDNGYNLELTAKRNHLRIVTGIFNVKPYPDEQAKHARQKLA 299
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
+L F RK I+ + + + + +++ + + ++
Sbjct: 300 NALTEHAFKQYDYRKVISKGEHE-----IDGKKYEVKKDLYDLVPKDKSKYQLKVSEDNQ 354
Query: 317 ESHFIDFE 324
D +
Sbjct: 355 LYVDYDRQ 362
>gi|256027623|ref|ZP_05441457.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D11]
gi|289765581|ref|ZP_06524959.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D11]
gi|289717136|gb|EFD81148.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. D11]
Length = 407
Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 59/250 (23%), Positives = 97/250 (38%), Gaps = 10/250 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ DT G+VI D + AS+TK+M+ V F + L + ISK +
Sbjct: 153 RAVIVGDTK-GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKTPLK 211
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGL 147
Y S K G L++ +K V SAN+ AIAE + + FV MN + LGL
Sbjct: 212 YGGSGIALKAGQMFILEDLIKAAAVYSANNATYAIAEYVGNGSIFGFVTKMNKKLRELGL 271
Query: 148 SA-THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF------QIKGLEIKGKKY 200
+ G+ + + + + +
Sbjct: 272 QNEIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKTTKIHNDKISI 331
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N +G G G+KTGF + +NI ++ +I V+LG TR+ + ++L
Sbjct: 332 RNRNHLIGEN-GVYGIKTGFHKEAKYNIAVASKFEGTDVIIVVLGGETYKTRDNLVRNIL 390
Query: 261 SMGFYNKTDR 270
++ N T +
Sbjct: 391 NILSENYTVK 400
>gi|168186694|ref|ZP_02621329.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
Eklund]
gi|169295300|gb|EDS77433.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum C str.
Eklund]
Length = 443
Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 73/366 (19%), Positives = 130/366 (35%), Gaps = 43/366 (11%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH-PWNPASLTKLMTAYVVFSFLKE 71
+ F ++D TG +I D P PAS TKL+TA ++ K
Sbjct: 19 CTTAFAANLNEPNIVGKSAIVIDAKTGEIIYAKDVDASPMYPASTTKLLTALLLAENKKP 78
Query: 72 -KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
T + K G TM+ D+A+K L++ SANDIA IA+++
Sbjct: 79 TDMLTYTEGSLKQPEYTLRSFLKGKLKVGDTMSADDAMKGLLLHSANDIAYMIADNVGGN 138
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--HGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ F + MN+ LGL THF+ +G+ HYT+A D++I+ ++
Sbjct: 139 AENFAKMMNDKVSQLGLKNTHFVTPNGLDNGISNHYTSAYDLSIIGKAAYSNEWVRNTMN 198
Query: 189 QIKG----------LEIKGKKY--------------PNTNWAVGTFLGADGMKTGFTCAS 224
+ K N+ + G KTG+T +
Sbjct: 199 LKQSKLELSNGILGYPTNRNKLLGTTLDSNFLSKLGNNSKETPVSDAICIGGKTGYTTKA 258
Query: 225 GFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNK-----------TDR 270
G +VA + ++ LI V++ + + K + +++ + K
Sbjct: 259 GRCLVAMFNKDNRVLIGVVMKSAYDKNDTYVFKDMSKIINFAYSQKQVPLYKANTELKTL 318
Query: 271 KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
++ F N + E+V E+ + + + E K T +
Sbjct: 319 PIQYRPLRFFGPTKTINVPVTVKEDVTYYDNELNKSQIKTEF-ELPELSIGQLSKNTSVG 377
Query: 331 NKITKK 336
+ K+
Sbjct: 378 KLVLKE 383
>gi|134293778|ref|YP_001117514.1| murein-DD-endopeptidase [Burkholderia vietnamiensis G4]
gi|134136935|gb|ABO58049.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Burkholderia vietnamiensis G4]
Length = 363
Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 51/255 (20%), Positives = 89/255 (34%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ T ++D ++G + AS++KLMTA V +
Sbjct: 107 LLASCGYTPRAVRTLHSRAAYVVDVDSGTPLLARNARTVRPIASISKLMTALVARDADRP 166
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+L ++ + S G+ ++ + ++ S N A A++
Sbjct: 167 LNGVLRVTA---RDRDTIKFTGSRLPVGAELSRRQMFHIALMSSENRAAAALSRDYPGGR 223
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQI 190
FV MN ++ LG+ ATHF G+ + +TA D+A L D
Sbjct: 224 AAFVGAMNRKARQLGMRATHFREPTGL-SPHNVSTAEDLARLVGAAAHDPLIRYFSTDTS 282
Query: 191 KGLEIKGKKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+E + N G KTGF SG +V + V+LGA
Sbjct: 283 TTIEAGDGELLYVNSDPLVRYGRLPIRLQKTGFINESGHGVVMRTRVHGRRETIVLLGAS 342
Query: 248 DRNTRNKVSASLLSM 262
R + + +
Sbjct: 343 TRAGVSSDALKIHRW 357
>gi|219853360|ref|YP_002470482.1| hypothetical protein CKR_0017 [Clostridium kluyveri NBRC 12016]
gi|219567084|dbj|BAH05068.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 316
Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 56/247 (22%), Positives = 95/247 (38%), Gaps = 17/247 (6%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ P L+ ++ + + PASLTK+MTA V L K +
Sbjct: 53 STVSISPDKLNSPNVILIRLKDHAILMQKNSEEKIYPASLTKIMTAIVAIENLPNLKEEI 112
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ + E S + F+ G ++ + L ++ S + + +A + +E+ FV+
Sbjct: 113 RLTNSTFQRLYEADASMTGFQPGEKVSAIDLLYGALLPSGAESCIGLANQIAGSEQGFVK 172
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN + +LG+ THF N G+ HYTT ++A+L + + +
Sbjct: 173 MMNQKAADLGMDNTHFENVTGIHNENHYTTVENLAVLLSYALQNDTFRDIFTSSRHSTQP 232
Query: 197 GKKYP--------------NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
K+P N N G G KTG+T G + + A G Q I +
Sbjct: 233 TNKHPDGITFYSTMFEELDNQNIIDGE---ILGGKTGYTDEVGLCLASLAKVGRQEYILI 289
Query: 243 ILGALDR 249
GA
Sbjct: 290 SAGAKGD 296
>gi|118161327|gb|ABK64011.1| putative carboxypeptidase [Janthinobacterium lividum]
Length = 583
Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 48/254 (18%), Positives = 85/254 (33%), Gaps = 10/254 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ +A + + D +G V+ D AS+TKLMTA VV
Sbjct: 325 MLAEAATGMLALPVSAKHMLVFDDASGKVLMAKDADAVVPIASITKLMTAMVVLDAG--- 381
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ I + + + ++ L+L ++ S N A A+A +
Sbjct: 382 -LDPDEQLRIVRADGDASLQRHSLLADGVAVSRGALLQLALLPSENRAAAALARTYPGGN 440
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
F Q + ++LGL T G + +TA ++A + +
Sbjct: 441 AAFAQALQAKIRHLGLVRTTLTEPVG-SSPANTSTASEVAKIVAAAARYPDIARITSHRQ 499
Query: 192 GL---EIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
K + NTN VG KTG + +G + G + + V+L A
Sbjct: 500 ASVAVNGKTRTLHNTNPLVGGKGWDILLSKTGSSNEAGSCLTMRMRSGGKHVTVVLLDAD 559
Query: 248 DRNTRNKVSASLLS 261
R+ + +
Sbjct: 560 GAQRRSLDAGHIRD 573
>gi|237743211|ref|ZP_04573692.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 7_1]
gi|229433507|gb|EEO43719.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 7_1]
Length = 389
Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 59/250 (23%), Positives = 97/250 (38%), Gaps = 10/250 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ DT G+VI D + AS+TK+M+ V F + L + ISK +
Sbjct: 135 RAVIVGDTK-GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKTPLK 193
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGL 147
Y S K G L++ +K V SAN+ AIAE + + FV MN + LGL
Sbjct: 194 YGGSGIALKAGQMFILEDLIKAAAVYSANNATYAIAEYVGNGSIFGFVTKMNKKLRELGL 253
Query: 148 SA-THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF------QIKGLEIKGKKY 200
+ G+ + + + + +
Sbjct: 254 QNEIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKTTKIHNDKISI 313
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N +G G G+KTGF + +NI ++ +I V+LG TR+ + ++L
Sbjct: 314 RNRNHLIGEN-GVYGIKTGFHKEAKYNIAVASKFEGTDVIIVVLGGETYKTRDNLVRNIL 372
Query: 261 SMGFYNKTDR 270
++ N T +
Sbjct: 373 NILSENYTVK 382
>gi|329116007|ref|ZP_08244724.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
NCFD 2020]
gi|326906412|gb|EGE53326.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus parauberis
NCFD 2020]
Length = 391
Score = 100 bits (247), Expect = 4e-19, Method: Composition-based stats.
Identities = 62/318 (19%), Positives = 131/318 (41%), Gaps = 52/318 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-----------------SIAETNKLPYYTLLDTNTGHVIA 43
+++ ++++ + + S+ +K +++ G +I
Sbjct: 2 IKKIMLLLCFFVALIPLFSVKGEEQDDILSLTRRYGYSVKPADKPVSSIVVNAKNGDIIW 61
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
++ D +PAS++KL T Y++F +K K L+ I S+ + SN+ G
Sbjct: 62 QDNIDASRDPASMSKLFTLYLLFEDIKAGKLSLSDHIRASQTDQDISQIYAISNNKIVAG 121
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGLSATHFMNAHG- 157
+ + + + V S+N + +A + + F+ +N T++ LG+ T F NA G
Sbjct: 122 VDYPIRDLITMTAVPSSNAATLMLANYMSDNDAGAFINRINVTAQKLGMKNTFFTNASGA 181
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ T+ARD+AIL + ++P+ + + ++ +
Sbjct: 182 VASAFEGHYSPEGYDSNQPNKTSARDLAILCYHFLKNYPEILEFTCKSSVKTMDRTPYEE 241
Query: 204 NWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251
+ + G DG+KTG + ++ FN V +A + D LI++++G D +
Sbjct: 242 EFHSYNYSLPGDKFGIKGVDGLKTGSSPSAAFNAVITAKRDDTRLISIVMGVGDWSDQEG 301
Query: 252 ---RNKVSASLLSMGFYN 266
R+ ++ GF N
Sbjct: 302 EFHRHPFINAITEYGFTN 319
>gi|229015415|ref|ZP_04172419.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH1273]
gi|228745873|gb|EEL95871.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus AH1273]
Length = 244
Score = 100 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/186 (18%), Positives = 66/186 (35%), Gaps = 16/186 (8%)
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQI-----KGLEIKGKKYPNTNWA----VGTFLGADG 215
+ARD+AIL+ R+ DFP+ + +I + + PN NW + + G DG
Sbjct: 1 MSARDVAILAQRLIQDFPKTLDIAKISKKVFREGTPDRIEMPNWNWMLKGLIKEYEGVDG 60
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
+KTG T +G + + I+V++ R + L GF N +K
Sbjct: 61 LKTGSTPEAGDCFTGTIERNGMRFISVVIKTNSHTARFDETKKLYDYGFANFEMKKMYEK 120
Query: 276 IIKDFYQQNLSNEVPN-------ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
++ + E + V + + + + + +K
Sbjct: 121 GSSVKGKETVRVENAKDKDVAVQTKQAVSLPVPKGSKDVYKTEFKEGNKGQEAPVKKGVS 180
Query: 329 LKNKIT 334
L +
Sbjct: 181 LGQMVI 186
>gi|116619089|ref|YP_819460.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116097936|gb|ABJ63087.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 299
Score = 100 bits (247), Expect = 5e-19, Method: Composition-based stats.
Identities = 58/297 (19%), Positives = 111/297 (37%), Gaps = 37/297 (12%)
Query: 1 MRQ--FLVIIAMAMLSNIFPFLSIAE-------------TNKLPYYTLLDTNTGHVIAEN 45
M++ L + LS FP + T +++ +T +++E
Sbjct: 1 MKKSGLLAAFCIVTLSTAFPVNGQQQIQASEKKKSIKKITTTAKAAVVMNADTDKILSEK 60
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
AS++KLMT Y+V L + K E ++ + + D
Sbjct: 61 NAHKSLAIASISKLMTGYLVLKKLPLGT-QVQPSSNTMKIGEESNLASVNLDSNQSYSAD 119
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------- 158
L+ + SAND A+A+ + + ++ KFV+ M TS++ GL++ + NA G+
Sbjct: 120 ELLRAALQLSANDAAIALGDQVSGSQTKFVKLMTKTSQSWGLASAQWYNAAGIRNDEAMD 179
Query: 159 ------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----NTNWAV 207
+ +A D+A+++ I P+ + G N+
Sbjct: 180 DGVKAPDNAENKMSAVDVALMTDNILEKTPRIKRIVHQSQNQFDGITQDSNYVLMKNYFK 239
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL---DRNTRNKVSASLLS 261
T G K G + SG + V + I V+L A + + + + +L+
Sbjct: 240 NTKYTVTGAKLGISVKSGVSYVGLFTYKGKHYITVVLHADQYTNLSAVFRETKRILN 296
>gi|311106462|ref|YP_003979315.1| D-alanyl-D-alanine endopeptidase 1 [Achromobacter xylosoxidans A8]
gi|310761151|gb|ADP16600.1| D-alanyl-D-alanine endopeptidase 1 [Achromobacter xylosoxidans A8]
Length = 331
Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 55/241 (22%), Positives = 93/241 (38%), Gaps = 15/241 (6%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV----FSFLKEKKAMLTTPI 80
K + D +T V+ AS+TKLMTA + + +
Sbjct: 89 KLKSSTILVQDLDTSEVLFARNEGAVRPIASITKLMTALTLVKAGLPMDEIITIDASDTR 148
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+ S+ S G+ ++ + L+L +V S N A A+ + FV MN
Sbjct: 149 SASELP-------SRLTAGTKLSRADLLRLALVPSENSAAQALGRTYTGGSAAFVAAMNA 201
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
++ LG++ + F G+ ++ARD+ L + P Y + G+ +
Sbjct: 202 EARALGMTDSSFAEPSGLSNENQ-SSARDLVKLLA-AISAQPLISQYTGETSYQAAGQTF 259
Query: 201 PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL-DRNTRNKVSAS 258
NTN VG KTG T +G +V + G ++L V+L A +R +
Sbjct: 260 RNTNILVGRPQWDILVSKTGTTREAGDCLVMAVKVGKRNLAMVLLNAQGTSGSRFGDAVR 319
Query: 259 L 259
L
Sbjct: 320 L 320
>gi|300854622|ref|YP_003779606.1| D-alanyl-D-alanine carboxypeptidase [Clostridium ljungdahlii DSM
13528]
gi|300434737|gb|ADK14504.1| D-alanyl-D-alanine carboxypeptidase precursor [Clostridium
ljungdahlii DSM 13528]
Length = 325
Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 91/238 (38%), Gaps = 11/238 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
K L+ + + + PASLTK+MTA V L + +
Sbjct: 70 KLKSHNAILIRLKDQTTLMQKNSEEKIYPASLTKMMTAIVAIENLPNLNEEVKLTNSAFH 129
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
S + F+ +T + L +++ S + + +AE + +E+ FV+ MN +
Sbjct: 130 ELHGEDASMAGFQPNEQVTALDLLYGILLPSGAECCIGLAEQIAGSEQNFVKMMNQKAAE 189
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT- 203
LG+ THF N G+ HYTT +D+AIL + + + K+P
Sbjct: 190 LGMRNTHFENTTGLQNENHYTTVKDLAILLSYALQNDTFREIFTSSRHSTQPTNKHPGGI 249
Query: 204 ----------NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
N G KTG+T +G + + A G Q I + GA +
Sbjct: 250 TFYSTMFKGLNNQNIIGGEILGGKTGYTNEAGLCLASLAKVGKQDYILISAGAKGDHN 307
>gi|145487772|ref|XP_001429891.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124396985|emb|CAK62493.1| unnamed protein product [Paramecium tetraurelia]
Length = 318
Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 64/276 (23%), Positives = 110/276 (39%), Gaps = 32/276 (11%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ ++ T+ G +A P ASLTK+MTAY + T I
Sbjct: 19 NPPQTTALSWCIV-TSIGDELASKSPSLKLEVASLTKIMTAYTAIQLSDIIQFQNETFIR 77
Query: 82 ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC------------- 128
I + A++ +++ ++ T++L+ L L++ S ND A++IA
Sbjct: 78 IPRIATQIGGTSAFLRRDDTLSLEELLYALMLPSGNDAAISIALHFGSILNTHRRQKIAS 137
Query: 129 ----------------KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+FV+ MN + LG+ + F N HG+ + +TA DM
Sbjct: 138 YITCDTIQGFYDDTQMSNMNRFVRQMNENAMKLGMRDSQFSNPHGLSSKANKSTALDMCR 197
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+S P K + ++ NTN + F G+KTG T +G + S
Sbjct: 198 MSS-AYMKIPILKQICNSKSYSCRNYEWFNTN-QLLHFENYSGIKTGITPNAGACLAVSY 255
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
S+I V++GA D+ R + + L++ T
Sbjct: 256 ESLLGSIIVVLIGAKDQKRRFEETDKLINWVSREYT 291
>gi|159038217|ref|YP_001537470.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola
CNS-205]
gi|157917052|gb|ABV98479.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola
CNS-205]
Length = 403
Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 57/293 (19%), Positives = 109/293 (37%), Gaps = 16/293 (5%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ A + + D +G V+ P PAS+ K ++ + +
Sbjct: 74 LVVPADTPKAPAVTATSWVVADLASGRVLGGCGPHQHRTPASVQK-----LLLAAALLPR 128
Query: 74 AMLTTPITISK---NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLC 128
T + +++ + + S G T+ L+++S ND A +A
Sbjct: 129 LDPTKVVEVTREDLDDLDPASSLMGVVAGGRYTVKELWLGLLLQSGNDAANVLARIGGGS 188
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW-RIKTDFPQYMHY 187
+ VQ MN ++ L + TH + G+ G YT+A D+A+++ D +
Sbjct: 189 AGREGGVQVMNEEARRLRANQTHAVTPSGLDGTGQYTSAYDLALIARATFARDDFRRYIA 248
Query: 188 FQIKGLEIKGKK----YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ L + +GT+ G G KTGFT + V A + + L +
Sbjct: 249 TRTAHLPSGPGRSALALTGDETLLGTYPGMLGGKTGFTDLARQTYVGVAERDGRRLAVTL 308
Query: 244 LGALDRN-TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
LGA +A+LL+ GF D + + + +++ V ++
Sbjct: 309 LGAETAPLGSLGEAAALLNWGFALAPDDAVGHLVAPEQAKKDKDKRVVVAGDD 361
>gi|172063483|ref|YP_001811134.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria MC40-6]
gi|171996000|gb|ACB66918.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
ambifaria MC40-6]
Length = 359
Score = 99.7 bits (246), Expect = 5e-19, Method: Composition-based stats.
Identities = 51/255 (20%), Positives = 90/255 (35%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + LLD ++G + AS++KLMTA V +
Sbjct: 103 LLASCGYSPRAVRSLHSRVAYLLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRP 162
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+L S++ + S G+ ++ + ++ S N A A++
Sbjct: 163 LNGVL---RVTSRDRDTIKFTGSRLPIGAELSRRQMFHIALMSSENRAAAALSRDYPGGR 219
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-HYFQI 190
FV+ MN ++ LG+ THF G+ + +TA D+A L D
Sbjct: 220 AAFVKAMNREARRLGMRHTHFREPTGL-SPHNVSTAEDLARLVGAAAQDPLIRYFSTDTS 278
Query: 191 KGLEIKGKKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + N G KTGF SG +V + V+LGA
Sbjct: 279 TTVQAGDGELLYVNSDPLVRNGSLPIRLQKTGFINESGHGVVMRMRVKGRRETIVLLGAP 338
Query: 248 DRNTRNKVSASLLSM 262
R + + +
Sbjct: 339 TRAGVSSDAVKIHRW 353
>gi|27466953|ref|NP_763590.1| penicillin binding protein 4 [Staphylococcus epidermidis ATCC
12228]
gi|27314495|gb|AAO03632.1|AE016744_35 penicillin binding protein 4 [Staphylococcus epidermidis ATCC
12228]
Length = 407
Score = 99.7 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 78/355 (21%), Positives = 140/355 (39%), Gaps = 44/355 (12%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY----------TLLDTNTGHVIAENYPDHPWNP 53
+ + + +N L+ E ++ T G ++ + + D +P
Sbjct: 2 LISLFCCSFFTNTTYALTPVEITNNSKAQLDEGLNPRGAVVTTTNGQILYKYHKDKKVDP 61
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTLDNALK 109
AS TKLMT V++ + K L + IS+ + + KKG T T++ LK
Sbjct: 62 ASTTKLMTMLVIYDDINHSKVSLKDKVKISERYQKMSQLPNLTTFPLKKGQTYTIEQLLK 121
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG------------ 157
+ S+N + +AE + KF MN ++ LG++ THF N G
Sbjct: 122 QAALNSSNAATLVLAEHIDGDISKFTDRMNREAQLLGMNQTHFTNPSGANNKIIKPYEPK 181
Query: 158 --VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT----FL 211
+ YTTA DMAIL+ + +P + Q++ ++ NTN ++
Sbjct: 182 KYKDETSSYTTANDMAILTNHLLRKYPNILKMTQLETDTQYNQQLHNTNLSLPHQSLGMK 241
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG------ALDRNTRNKVSASLLSMGFY 265
DG+KTG T G+N+ +A + + + + R+KV+ +L F
Sbjct: 242 NVDGLKTG-TSKEGYNLALTAKKDQLRVNTNLFNIQPYPSEKAKFARHKVANALTQNAFK 300
Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
N T RK I+ + + N+ E++ + + K++ S
Sbjct: 301 NYTYRKVISKGAH-----QIDGKTYNVKEDLYDVVPKDNSKYELKISEKNQLSVK 350
>gi|118362318|ref|XP_001014386.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila]
gi|89296153|gb|EAR94141.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila SB210]
Length = 988
Score = 99.7 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 69/312 (22%), Positives = 121/312 (38%), Gaps = 42/312 (13%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D I P ASLTK+MT Y++ +++KK T I +S+
Sbjct: 649 NLTAKSVCIFDVEKNKPILCLKGKKPREVASLTKIMTCYIICQAIQKKKIKQTEQIKVSR 708
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL----------------- 127
A+ +++ + G +++ + L L++ S ND A A+AE +
Sbjct: 709 AAASMIGTSAYLRSGDQLSVWDLLHGLMLPSGNDAAFALAEYMGRILFFEDNDYKEQLQQ 768
Query: 128 ----------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
K F++ MN +K+L L+ T + N HG+V + ++A D+ LS
Sbjct: 769 NPNSFENCKAKDAIKCFLKEMNRVAKDLKLANTKYSNPHGLVNKSNRSSALDICKLSAHC 828
Query: 178 KTDFPQYMHYFQIKGLE---------IKGKKYPNTNWAVGTFLGAD-GMKTGFTCASGFN 227
T + + K I+ + NTN + + G+KTG TC +G
Sbjct: 829 LTKSQLFRQIVKTKQYTCQVRNKQGSIRIASWENTNKCLLRYNTICDGVKTGVTCTAGPC 888
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM-----GFYNKTDRKKINYIIKDFYQ 282
+ S D+ I IL R S + + G + K +K Y+
Sbjct: 889 LTTSWRVKDRHFIITILKCDSLELRYSESQRVFAWICEKLGIELSAEEKMPYEKVKQLYK 948
Query: 283 QNLSNEVPNISE 294
+N + ++ E
Sbjct: 949 RNSVESIQSMKE 960
>gi|237740954|ref|ZP_04571435.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 4_1_13]
gi|229430998|gb|EEO41210.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium sp. 4_1_13]
Length = 414
Score = 99.7 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 64/250 (25%), Positives = 100/250 (40%), Gaps = 10/250 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ DT G+VI D + AS+TK+M+ V F + L + ISKN +
Sbjct: 160 RAVIVGDTK-GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKNPLK 218
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGL 147
Y S K G L++ +K V SAN+ AIAE + K + FV MN K LGL
Sbjct: 219 YGGSGIALKVGQMFVLEDLIKASAVYSANNATYAIAEYVGKGSVFSFVTKMNRKLKELGL 278
Query: 148 SA-THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF------QIKGLEIKGKKY 200
+ G+ + + + + +
Sbjct: 279 QNEIRYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKSTKIHNGKISI 338
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N +G G G+KTGF + +NI ++ D +I V++G TR+K+ S+L
Sbjct: 339 RNRNHLIGEN-GVYGIKTGFHKEAKYNIAVASKFQDTDVIIVVMGGETYKTRDKIVLSVL 397
Query: 261 SMGFYNKTDR 270
+ N T +
Sbjct: 398 DILNNNYTVK 407
>gi|322411115|gb|EFY02023.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 393
Score = 99.3 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 75/341 (21%), Positives = 138/341 (40%), Gaps = 50/341 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENY 46
+++ ++I M I P +I+E N+ ++D NT ++ ++
Sbjct: 2 IKRIALVIFTVMCFLIMPVSHAEDIMDITRQAGYTISEVNRPKASIVVDANTSDILWQDN 61
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTM 102
D P +PAS++K+ T YV+F L + K + T +T ++ SN+ G
Sbjct: 62 IDIPRDPASMSKMFTLYVLFEELAKGKITMDTTVTATETDQAIAKIYEISNNNIVAGVAY 121
Query: 103 TLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 122 PIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKKLGMTNTHFSNASGAAAQ 181
Query: 162 ---------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+ TTARD+A L + +P + + + +
Sbjct: 182 AFQGYYNPTKYDLSAANITTARDLAKLLYAFLKKYPHIIDFTNQSVVHTMVGTPYEEEFH 241
Query: 207 VGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------ 251
+ G DG+KTG + ++ FN + +A +G+ LI +++G D +
Sbjct: 242 TYNYSLPNNQFGMEGVDGLKTGSSPSAAFNAMVTAKRGNTRLITIVMGVGDWSDQNGEFY 301
Query: 252 RNKVSASLLSMGF-YNKTDRKKINYIIKDFYQQNLSNEVPN 291
R+ +L GF +K+ K ++ Q +P
Sbjct: 302 RHPFVNALTEKGFSDSKSLTKAARKKLEKLVSQKKKENLPK 342
>gi|331699048|ref|YP_004335287.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudonocardia
dioxanivorans CB1190]
gi|326953737|gb|AEA27434.1| Serine-type D-Ala-D-Ala carboxypeptidase [Pseudonocardia
dioxanivorans CB1190]
Length = 411
Score = 99.3 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 51/259 (19%), Positives = 96/259 (37%), Gaps = 12/259 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L+ ++ + L D ++G V+A P PAS ++ + +
Sbjct: 68 LALPPGAPALPAGIDAAGWVLADLDSGVVLAARDPHGRQRPAST-----LKLLTTLVVLD 122
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ L + + + S + G + T+ L L++ S ND A A+A +L +
Sbjct: 123 RLPLDQTVVGDTSDVQVDGSRAGIGPGGSYTVQQLLTGLLLNSGNDTAHALARTLGGVPR 182
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYMHYFQI 190
M + +G T G+ G T+A D+A+ + F + +
Sbjct: 183 TL-DLMQQRAAAMGALDTRPATPSGLDGPGMSTSAYDLALFLRAALRNPTFAELTQLRLV 241
Query: 191 KGLEIKG---KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
N + + ++ GA G KTGFT A+ V +A + L+ ++
Sbjct: 242 AFPGFGDRPGFMLSNDDPLLSSYDGALGGKTGFTDAARHTFVGAAQRDGHRLVVALVRGE 301
Query: 248 DRNTR-NKVSASLLSMGFY 265
R +++LL GF
Sbjct: 302 QHPVRMVAQASALLDYGFA 320
>gi|78062125|ref|YP_372033.1| murein-DD-endopeptidase [Burkholderia sp. 383]
gi|77970010|gb|ABB11389.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Burkholderia sp. 383]
Length = 364
Score = 99.3 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++++ + +LD ++G + AS++KLMTA V +
Sbjct: 108 LMASCGYSPRAVNSLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRP 167
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+L + + S + GS ++ + ++ S N A A++
Sbjct: 168 LNGVLRVTAH---DRDTIKFTGSRLQVGSELSRREMFHIALMSSENRAAAALSRDYPGGR 224
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM----HY 187
FV MN ++ LG+ THF G+ + +TA D+A L D
Sbjct: 225 AAFVNAMNREARRLGMRHTHFREPTGL-SPHNVSTAEDLAKLVGAAAQDPLIRYFSTDTS 283
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + + + L KTGF SG +V + V+LGA
Sbjct: 284 TTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRETVVLLGAP 343
Query: 248 DRNTRNKVSASLLSM 262
R + + +
Sbjct: 344 TRAGVSSDAIKIHRW 358
>gi|78044170|ref|YP_359992.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996285|gb|ABB15184.1| D-alanyl-D-alanine carboxypeptidase [Carboxydothermus
hydrogenoformans Z-2901]
Length = 325
Score = 99.3 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 13/229 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
K Y T +I D P PAS TK+ TA +T+
Sbjct: 22 EIKAKAYYFFIPTTNQIIEAKNQDFPLPPASTTKIATALTALDLYPR-----NFTLTVKP 76
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
A + K + + + + L+++S ND A A+A ++ F+ +N K
Sbjct: 77 EAVRVTGTKIYLKPNEKIAVIDLVYGLMLESGNDAANALAW--VVGKENFMLILNYYLKQ 134
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE----IKGKKY 200
+GL++ F N G+ GH +A+D+ +L++ ++ + K E K + +
Sbjct: 135 MGLTSVSFKNPSGLSAPGHKISAKDLCVLTFYALLK-DEFADICKTKQYEAQSGFKPRVF 193
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
NTN + G+KTG T +G +V A +G+ LI +L DR
Sbjct: 194 HNTNRLLAVDSRVIGVKTGTTNEAGKCLVG-AWRGNSFLIGTVLNCPDR 241
>gi|126642515|ref|YP_001085499.1| putative D-ala-D-ala-carboxypeptidase penicillin-binding protein
[Acinetobacter baumannii ATCC 17978]
Length = 376
Score = 99.3 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 72/280 (25%), Positives = 126/280 (45%), Gaps = 10/280 (3%)
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+M AY+ +K K L IT + + ++ S K G +++D L LIV SA
Sbjct: 1 MMVAYIALKEIKAGKLKLNEVITATPVVSVVQWDESQMYLKAGEQISVDQLLAGLIVMSA 60
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND AV +AE + FVQ MN ++ LG+ THF N G+ HYTTA D+++LS
Sbjct: 61 NDAAVTLAEKISGDVPHFVQRMNQEAQALGMKDTHFSNPAGITMPDHYTTAHDLSLLSQA 120
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG- 235
+ P+Y+HY ++ + + TN A+ DG+KTG+T A+G+N+ +A +
Sbjct: 121 VIHQTPEYLHYSKMPSFSYNQRFHHATNLALKYDPSVDGLKTGYTKAAGYNLALTASRPS 180
Query: 236 ------DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
+ L+ ++LG R +++ L+++ + D I + + +
Sbjct: 181 FSPNLPQRRLLVIVLGTPSAVKRAEIADKLMNLAYAYTRDEVVIPEQKLIAELPVIKSTL 240
Query: 290 PNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
E + + D + ++I +L
Sbjct: 241 KMFKVETKQPTIVTTSLYAEP-TPIDLNTFDYATQRIQVL 279
>gi|206563597|ref|YP_002234360.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia
J2315]
gi|198039637|emb|CAR55605.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
precursor) [Burkholderia cenocepacia J2315]
Length = 360
Score = 99.3 bits (245), Expect = 7e-19, Method: Composition-based stats.
Identities = 49/255 (19%), Positives = 91/255 (35%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + +LD ++G + AS++KLMTA V +
Sbjct: 104 LLASCGYTPRAVGSLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRP 163
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+L ++ + S + GS ++ + ++ S N A A++
Sbjct: 164 LNGVLRVTA---RDRDTIKFTGSRLQVGSELSRREMFHIALMSSENRAAAALSRDYPGGR 220
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH----Y 187
FV+ MN ++ LG+ THF G+ + +TA D+A L D
Sbjct: 221 VAFVKAMNREARRLGMRHTHFREPTGL-SPHNVSTAEDLARLVGAAAQDPLIRYFSTDLS 279
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + + + L KTGF SG +V + V+LGA
Sbjct: 280 TTVRPGDGELVYVNSDPLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRETVVLLGAP 339
Query: 248 DRNTRNKVSASLLSM 262
R + + +
Sbjct: 340 TRAGVSSDAIRIHRW 354
>gi|251781774|ref|YP_002996076.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|242390403|dbj|BAH80862.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|323126581|gb|ADX23878.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 393
Score = 99.3 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 77/341 (22%), Positives = 140/341 (41%), Gaps = 50/341 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENY 46
+++ ++I M I P +I+E N+ ++D NT ++ ++
Sbjct: 2 IKRIALVIFTVMCFLIMPVSHAEDIMDITRQAGYTISEVNRPKASIVVDANTSDILWQDN 61
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTM 102
D P +PAS++K+ T YV+F L + K + T +T ++ SN+ G
Sbjct: 62 IDIPRDPASMSKMFTLYVLFEELAKGKITMDTTVTATETDQAIAKIYEISNNNIVAGVAY 121
Query: 103 TLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 122 PIRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKKLGMTNTHFSNASGAAAQ 181
Query: 162 ---------------GHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGKKYP 201
+ TTARD+A L + +PQ + + +++
Sbjct: 182 AFQGYYNPTKYDLSAANITTARDLAKLLYAFLKKYPQIIDFTNQSVVHTMVGTPYEEEFH 241
Query: 202 NTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------ 251
N G DG+KTG + ++ FN + +A +G+ LI +++G D +
Sbjct: 242 TYNHSLPNNQFGMEGVDGLKTGSSPSAAFNAMVTAKRGNTRLITIVMGVGDWSDQNGEFY 301
Query: 252 RNKVSASLLSMGF-YNKTDRKKINYIIKDFYQQNLSNEVPN 291
R+ +L GF +K+ K ++ Q +P
Sbjct: 302 RHPFVNALTEKGFSDSKSLTKAARKKLEKLVPQKKKENLPK 342
>gi|291459228|ref|ZP_06598618.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291418482|gb|EFE92201.1| serine-type D-Ala-D-Ala carboxypeptidase [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 334
Score = 99.3 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 27/261 (10%)
Query: 22 IAETNKLPYYTLLDTNTGH---VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
AE P + L D +T +A P AS+TK+MTA V ++ L
Sbjct: 74 NAEELSSPAFLLADYSTKEKPEPLAYRNPYARTYQASITKVMTALVCLETVQ----DLNQ 129
Query: 79 PITISKNASEYPPSNSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T+++ + +S+ K G + +++ L +++ S ND AVA+AE+ + + FV+
Sbjct: 130 EFTVTQRSMIRDEGSSSALLKVGDRLRIEDLLYGMLLPSGNDAAVAVAEASAGSVEAFVK 189
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN T+ LGL+ THF+N +G+ HYTTA D+ +L + ++ +
Sbjct: 190 KMNETALRLGLTGTHFVNPNGLPSDDHYTTAYDIYLLLA-EAMKYEEFRKIVGSTSYTVN 248
Query: 197 GKKYPNTNWAVGT---------------FLGADGMKTGFTCASGFNIVASAIQ--GDQSL 239
+ N L G KTG T +G+ + + +
Sbjct: 249 YRDKNNVPKTQIWKGSNQFMTGERETPEDLKVLGGKTGTTKKAGYCLTMDTERISTQKEY 308
Query: 240 IAVILGALDRNTRNKVSASLL 260
I+V++ ++ LL
Sbjct: 309 ISVVMKDDSKDELYSDMTKLL 329
>gi|161520620|ref|YP_001584047.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
multivorans ATCC 17616]
gi|189353194|ref|YP_001948821.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC
17616]
gi|160344670|gb|ABX17755.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
multivorans ATCC 17616]
gi|189337216|dbj|BAG46285.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia multivorans ATCC
17616]
Length = 364
Score = 99.3 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + +LD ++G + AS++KLMTA V +
Sbjct: 108 LLASCGYNPRAVRSLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRP 167
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+L + + S + GS ++ + + ++ S N A A++
Sbjct: 168 LNGVLRVTA---NDRDTIKFTGSRLQVGSELSRRDMFHIALMSSENRAAAALSRDYPGGR 224
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM----HY 187
FV+ MN ++ LG+ THF G+ + +TA D+A L D
Sbjct: 225 AAFVKAMNREARRLGMRHTHFREPTGL-SPHNVSTAEDLARLVDAAAQDPLIRYFSTDRS 283
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + + + L KTGF SG +V + V+LGA
Sbjct: 284 TTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRTTVVLLGAP 343
Query: 248 DRNTRNKVSASLLSM 262
R + + ++
Sbjct: 344 TRAGVSSDAITIHRW 358
>gi|89899952|ref|YP_522423.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Rhodoferax
ferrireducens T118]
gi|89344689|gb|ABD68892.1| murein-DD-endopeptidase. Serine peptidase. MEROPS family S11
[Rhodoferax ferrireducens T118]
Length = 282
Score = 99.3 bits (245), Expect = 8e-19, Method: Composition-based stats.
Identities = 48/265 (18%), Positives = 97/265 (36%), Gaps = 17/265 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
++ V +A+ ++ + +++ +G ++ E ASLTKLM
Sbjct: 2 LKHLFVCLAICSAASASAMS-----FGSQHAIVVNNESGEILFEENASSVVPIASLTKLM 56
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS---TFKKGSTMTLDNALKLLIVKSAN 117
TA VV IS ++ G+T+ L+L ++ S N
Sbjct: 57 TAMVVLDS------KPDMEEKISIQLADVDMFKHSASHVPLGTTLPRREVLQLALMSSDN 110
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A ++A + FV+ ++ K+LG+ T G+ T A +
Sbjct: 111 RAAASLARTYPGGNPAFVKAVHEKIKSLGMINTVIKEPTGLSPENASTAADLAKMAFAAS 170
Query: 178 KTDFPQYMHYFQIK--GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQ 234
+ + + ++ + ++ NTN VG KTGFT +G ++
Sbjct: 171 RYPVIVNITTDRSDLINMQGRSVEFHNTNRLVGKRGWDILLSKTGFTNEAGHCLIMRIKL 230
Query: 235 GDQSLIAVILGALDRNTRNKVSASL 259
++ V+L A ++ + ++
Sbjct: 231 AGKNTTLVLLNAKASSSTFFDALNI 255
>gi|227509182|ref|ZP_03939231.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227525051|ref|ZP_03955100.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC
8290]
gi|227087763|gb|EEI23075.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC
8290]
gi|227191328|gb|EEI71395.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 408
Score = 98.9 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 32/268 (11%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
LD NT V+ + P AS++KLMT Y+V + T+ + S
Sbjct: 141 AKGAVALDVNTNGVVWSKNANTPRPIASVSKLMTLYLVQQKISNGGGTWTSKVNTSNAGL 200
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLI----VKSANDIAVAIAES-----LCKTEKKFVQHM 138
+ +STF ++ L ++S+N+ A+A+ + KKF+ M
Sbjct: 201 KKLGKDSTFGGFKFTKNSYTVRDLYLAALIESSNNAAIALGQWVAGGSTPTYNKKFISMM 260
Query: 139 NNTSKNLGLSATHFMNAHGVV-------------QHGHYTTARDMAILSWRIKTDFPQYM 185
N +K+ LS T F++A G+ + + +A D+A ++ + TD+ +
Sbjct: 261 NAQAKSWNLSNTSFVSASGMEQNSLKPFGYSIGGANANMVSAADVAQIARHLITDYNDVL 320
Query: 186 HYFQIKGLEIKGKKYPNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-S 238
I + + G+K N N L DG+KTG+T +G+ V + +
Sbjct: 321 KDASIGSMSLDGQKLYNYNNLLPGRKYYQKSLNVDGLKTGYTDPAGYCFVGTGRKSGHDR 380
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + + SL++ +
Sbjct: 381 IITVVLHDENE---FTETRSLMNYVYNK 405
>gi|260495307|ref|ZP_05815434.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_33]
gi|260197085|gb|EEW94605.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_33]
Length = 418
Score = 98.9 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 59/250 (23%), Positives = 97/250 (38%), Gaps = 10/250 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ DT G+VI D + AS+TK+M+ V F + L + ISK +
Sbjct: 164 RAVIVGDTK-GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKTPLK 222
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGL 147
Y S K G L++ +K V SAN+ AIAE + + FV MN + LGL
Sbjct: 223 YGGSGIALKAGQMFILEDLIKAAAVYSANNATYAIAEYVGNGSIFGFVTKMNKKLRELGL 282
Query: 148 SA-THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF------QIKGLEIKGKKY 200
+ G+ + + + + +
Sbjct: 283 QNEIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKTTKIHNDKISI 342
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N +G G G+KTGF + +NI ++ +I V+LG TR+ + ++L
Sbjct: 343 RNRNHLIGEN-GVYGIKTGFHKEAKYNIAVASKFEGTDVIIVVLGGETYKTRDNLVRNIL 401
Query: 261 SMGFYNKTDR 270
++ N T +
Sbjct: 402 NILSENYTVK 411
>gi|227512066|ref|ZP_03942115.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus buchneri ATCC
11577]
gi|227084718|gb|EEI20030.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus buchneri ATCC
11577]
Length = 408
Score = 98.9 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 60/268 (22%), Positives = 110/268 (41%), Gaps = 32/268 (11%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
LD NT V+ + P AS++KLMT Y+V + T+ + S
Sbjct: 141 AKGAVALDVNTNGVVWSKNANTPRPIASVSKLMTLYLVQQKISNGGGTWTSKVNTSNAGL 200
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLI----VKSANDIAVAIAES-----LCKTEKKFVQHM 138
+ +STF ++ L ++S+N+ A+A+ + KKF+ M
Sbjct: 201 KKLGKDSTFGGFKFTKNSYTVRDLYLAALIESSNNAAIALGQWVAGGSTPTYNKKFISMM 260
Query: 139 NNTSKNLGLSATHFMNAHGVV-------------QHGHYTTARDMAILSWRIKTDFPQYM 185
N +K+ LS T F++A G+ + + +A D+A ++ + TD+ +
Sbjct: 261 NAQAKSWNLSNTSFVSASGMEQNSLKPFGYSIGGANANMVSAADVAQIARHLITDYNDVL 320
Query: 186 HYFQIKGLEIKGKKYPNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-S 238
I + + G+K N N L DG+KTG+T +G+ V + +
Sbjct: 321 KDASIGSMSLDGQKLYNYNNLLLGRKYYQKSLNVDGLKTGYTDPAGYCFVGTGRKSGHDR 380
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + + SL++ +
Sbjct: 381 IITVVLHDENE---FTETRSLMNYVYNK 405
>gi|323694553|ref|ZP_08108719.1| hypothetical protein HMPREF9475_03583 [Clostridium symbiosum
WAL-14673]
gi|323501321|gb|EGB17217.1| hypothetical protein HMPREF9475_03583 [Clostridium symbiosum
WAL-14673]
Length = 353
Score = 98.9 bits (244), Expect = 9e-19, Method: Composition-based stats.
Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 25/222 (11%)
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKN---ASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
MTA +V L +T S+N E K G ++ + + L++KSA
Sbjct: 1 MTALLVLERS-----SLDDTVTFSENAVTNLEAGAVTLKIKAGDKFSVKDCMYALLLKSA 55
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
N++A +AE + + F MN + +LG + THF+N +G+ HYTTARDMA+++
Sbjct: 56 NEVANGLAEHVAGSVSGFADLMNQKAASLGCTNTHFVNPNGLNDSNHYTTARDMALIAKA 115
Query: 177 IK-------------TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
DFP ++ L + K N + G G KTG+T
Sbjct: 116 AFENQTLSQIASTVSYDFPATASVPTVRKLTMGHKMVNPAN--GEYYQGIVGGKTGYTSL 173
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+G +V A + + LIAV+L + T + +LL GF
Sbjct: 174 AGNTLVTCAERDGKRLIAVVL--KSKQTHYTDTKALLDYGFA 213
>gi|296328746|ref|ZP_06871260.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|296154081|gb|EFG94885.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 423
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/248 (23%), Positives = 96/248 (38%), Gaps = 9/248 (3%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
++ G+VI D + AS+TK+M+ V F + K L + ISKN +Y
Sbjct: 170 AVVVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGKISLNDSVRISKNPLKYG 229
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSA 149
S K G L++ +K V SAN+ AIAE + + FV MN K GL
Sbjct: 230 GSGIPLKAGQMFVLEDLIKASAVYSANNATYAIAEYVGNGSVFSFVAKMNKKLKEYGLQN 289
Query: 150 -THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF------QIKGLEIKGKKYPN 202
+ G+ + + + + + N
Sbjct: 290 EIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKSTKIHNGKISIRN 349
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N +G G G+KTGF + +NI ++ +I V++G TR+ + S+L +
Sbjct: 350 RNHLIGEN-GVYGIKTGFHKEAKYNIAVASKFEGIDVIIVVMGGETYKTRDGIVLSVLDI 408
Query: 263 GFYNKTDR 270
N T +
Sbjct: 409 LNSNYTIK 416
>gi|317056264|ref|YP_004104731.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
albus 7]
gi|315448533|gb|ADU22097.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ruminococcus
albus 7]
Length = 407
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 67/316 (21%), Positives = 123/316 (38%), Gaps = 22/316 (6%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
LLD ++ ++A D PASLTKLMT V + + +A
Sbjct: 91 DITCQTGILLDCDSNEILAGLKYDQRIYPASLTKLMTLLVAVENIDDMQAKYKFTKKDLA 150
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
++ S + F G +T+++ L I+ S D + +A ++ EK FV+ MN+ +
Sbjct: 151 PLTKENASCAGFVAGDEVTMEDLLYAAILPSGADGTLGLANAIAGNEKNFVKLMNDKVAD 210
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP--- 201
LGL+ T+F NA G+ HYTTA+DMA+++ + K K+Y
Sbjct: 211 LGLANTNFANASGLHHKQHYTTAQDMAVITKACMENETCRKVLCTEKWTTKPAKEYKEGI 270
Query: 202 ----NTNWAVGTF------LGAD-----GMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ G + GA+ G KTGFT +G+ + + IA+ +
Sbjct: 271 ELESIFHSRFGGYFVDADQDGAEDAKLLGGKTGFTDEAGYTLATVVEFKGKEYIAITTKS 330
Query: 247 LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
+ + + F N + Q S++ + + +
Sbjct: 331 DTYLASVEDAI----LVFENYLPGAAGTPDDRKEKQDEDSSDESEEENDTTFIEIKEKAD 386
Query: 307 NTQMKEAKDKESHFID 322
+++ + ++ + D
Sbjct: 387 SSKSDDDEESSAVVPD 402
>gi|107026153|ref|YP_623664.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
cenocepacia AU 1054]
gi|116692663|ref|YP_838196.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
cenocepacia HI2424]
gi|170738088|ref|YP_001779348.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
cenocepacia MC0-3]
gi|105895527|gb|ABF78691.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Burkholderia cenocepacia AU 1054]
gi|116650663|gb|ABK11303.1| murein-DD-endopeptidase, Serine peptidase, MEROPS family S11
[Burkholderia cenocepacia HI2424]
gi|169820276|gb|ACA94858.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Burkholderia
cenocepacia MC0-3]
Length = 360
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 49/255 (19%), Positives = 91/255 (35%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + +LD ++G + AS++KLMTA V +
Sbjct: 104 LLASCGYTPRAVGSLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARDADRP 163
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+L ++ + S + GS ++ + ++ S N A A++
Sbjct: 164 LNGVLRVTA---RDRDTIKFTGSRLQVGSELSRREMFHIALMSSENRAAAALSRDYPGGR 220
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH----Y 187
FV+ MN ++ LG+ THF G+ + +TA D+A L D
Sbjct: 221 AAFVKAMNREARRLGMRHTHFREPTGL-SPHNVSTAEDLARLVGAAAQDPLIRYFSTDLS 279
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + + + L KTGF SG +V + V+LGA
Sbjct: 280 TTVRPGDGELVYVNSDPLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRETVVLLGAA 339
Query: 248 DRNTRNKVSASLLSM 262
R + + +
Sbjct: 340 TRAGVSSDAIKIHRW 354
>gi|254254175|ref|ZP_04947492.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158]
gi|124898820|gb|EAY70663.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia dolosa AUO158]
Length = 341
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/255 (17%), Positives = 83/255 (32%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + +LD ++G + AS++KLMTA V +
Sbjct: 85 LLASCGYSPRAVRSLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARRADRP 144
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGS-TMTLDNALKLLIVKSANDIAVAIAESLCKT 130
L + ++ + + ++ + ++ S N A A++
Sbjct: 145 ----LNGVLRVTARDRDTIKFTGSRLPIGAELSRRQMFHIALMSSENRAAAALSRDYPGG 200
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
FV MN ++ LG+ THF G+ H T ++ K +Y
Sbjct: 201 RAAFVGAMNREARRLGMRRTHFREPTGLSPHNVSTADDLARLVGAAAKDPLIRYFSTDTS 260
Query: 191 KGLEIKGKKYPNTNWAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ + N G KTGF SG +V + V+LGA
Sbjct: 261 TTVRAGDDELLYVNSDPLVRYGRLPIRLQKTGFINESGHGVVMRMRVNGRRETIVLLGAP 320
Query: 248 DRNTRNKVSASLLSM 262
R + + +
Sbjct: 321 TRAGVSSDALKIHRW 335
>gi|149196127|ref|ZP_01873183.1| D-alanyl-D-alanine carboxypeptidase [Lentisphaera araneosa
HTCC2155]
gi|149140974|gb|EDM29371.1| D-alanyl-D-alanine carboxypeptidase [Lentisphaera araneosa
HTCC2155]
Length = 337
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 15/255 (5%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM--LTTPI 80
T + + + N G + + ASLTK +T V + +K+ L +
Sbjct: 80 PSTRNVRAGLVFEMNQGKTLWSTNANKSVPVASLTKCLTVLTVLNHIKKNPEYSLLDQVL 139
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMN 139
+ S T++++ L +VKSAND IAE K + K F+ MN
Sbjct: 140 ISKSSMKTSSSSFLRKYPKDTISIEELLISAMVKSANDSCQLIAEHFGKGDPKVFIAMMN 199
Query: 140 NTSKNLGLSATHFMNAHGVV------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG- 192
++ LG++ T NAHG+ + ++++ D+ L + D+P + + +
Sbjct: 200 KQAQELGMTQTRMSNAHGLPFNREKPELDNHSSMSDLLHLVRKSINDYPIILKWTSKREA 259
Query: 193 ----LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
K K NTN + G +G KTGFT +G+ + + + VI G +
Sbjct: 260 LLPVNSHKATKIGNTNPLLAV-KGVNGYKTGFTINAGWCQILTTRSNGKFYFLVITGCPN 318
Query: 249 RNTRNKVSASLLSMG 263
+NTR+ +L++
Sbjct: 319 KNTRDVTMRALMNWA 333
>gi|319744056|gb|EFV96433.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus agalactiae
ATCC 13813]
Length = 395
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 74/333 (22%), Positives = 134/333 (40%), Gaps = 54/333 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------------------NKLPYYTLLDTNTGHVI 42
M + +V +LS AE NK ++D N GH++
Sbjct: 1 MPKLIVSFLCILLSVTCVNSVQAEEHKDIMQITREAGYDVKDINKPKASIVID-NKGHIL 59
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKK 98
E+ D +PAS++K+ T Y++F L + K L T +T ++ SN+
Sbjct: 60 WEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVTATETDQAISKIYEISNNNIHA 119
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
G + + + V S+N + IA F++ +N T+K LG++ THF N G
Sbjct: 120 GVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRINETAKKLGMTKTHFYNPSG 179
Query: 158 ---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ TTARD++IL++ +P ++Y + ++
Sbjct: 180 AVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDILNYTKYPEVKAMVGTPYE 239
Query: 203 TNWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-- 251
+ + G DG+KTG + ++ FN + +A + + LI V+LG D +
Sbjct: 240 ETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQNTRLITVVLGVGDWSDQD 299
Query: 252 ----RNKVSASLLSMGFYNKTDRKKINYIIKDF 280
R+ +L+ GF + + ++K
Sbjct: 300 GEYYRHPFVNALVEKGFKDAKNISSKTPVLKAV 332
>gi|163814077|ref|ZP_02205469.1| hypothetical protein COPEUT_00230 [Coprococcus eutactus ATCC 27759]
gi|158450526|gb|EDP27521.1| hypothetical protein COPEUT_00230 [Coprococcus eutactus ATCC 27759]
Length = 331
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/250 (21%), Positives = 92/250 (36%), Gaps = 18/250 (7%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
LLD T + + PAS+TK+MT +V +++ + L +T+++ +
Sbjct: 79 AAMLLDNTTREPVIAHNAHKKIYPASMTKIMTGLLVIESIEKGEISLDDMVTLNRKVTFD 138
Query: 90 PPSNSTFKKG--STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ + N L L++ S ND V +AE + +E F MN ++ +G
Sbjct: 139 DWDAMASDLVGGCRINVKNLLYGLMITSYNDCGVILAELIAGSESAFCDMMNEKAQEIGA 198
Query: 148 SATHFMNAHGVVQHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEI----------- 195
+ THF N HG+ HYTTA D+ IL K D +
Sbjct: 199 TNTHFENCHGLHSDDHYTTAYDLYLILDEFSKHDLAYMIDSLSTYDFTYTDADGNEQVVT 258
Query: 196 --KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG--DQSLIAVILGALDRNT 251
+Y + KTG T + ++ +A+I GA +
Sbjct: 259 IEPTNEYLTGEVNLPDGYSIGSWKTGTTEEALNCLIMELKNDSTGHEYVAIIAGADGKEA 318
Query: 252 RNKVSASLLS 261
+++
Sbjct: 319 LYSGMTEMIN 328
>gi|65318836|ref|ZP_00391795.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A2012]
Length = 293
Score = 98.9 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 11/211 (5%)
Query: 1 MRQFLVIIAMAML-SNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
MR+ VII + ++ +++ P + A L++ ++G V+ P AS+
Sbjct: 56 MRRICVIITLLIIYASVMPIPTYAKMNSNVSARNAVLMEQHSGRVLYGKAEHEPQKIASI 115
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK+MTA + K K + +S A S K G + L++ + L+++S
Sbjct: 116 TKIMTALLAAESGKMK-----ERVLVSNEAVRVEGSAIYLKPGQKVKLEDLVYGLMLRSG 170
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSW 175
ND A IAE++ + + FV MN +K + + THF N HG+ HY++A DMA+L+
Sbjct: 171 NDAAQVIAENVGGSIEGFVYLMNEKAKQIRMKDTHFSNPHGLDGDGSHYSSAYDMALLTR 230
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+ + F K + YP N
Sbjct: 231 YAMGN-ETFKEIFGTKTYKSDSWDYPWKNKH 260
>gi|19703412|ref|NP_602974.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19713482|gb|AAL94273.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 368
Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/248 (23%), Positives = 96/248 (38%), Gaps = 9/248 (3%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
++ G+VI D + AS+TK+M+ V F + K L + ISKN +Y
Sbjct: 115 AVVVGDTKGNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGKISLNDSVRISKNPLKYG 174
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGLSA 149
S K G L++ +K V SAN+ AIAE + + FV MN K GL
Sbjct: 175 GSGIPLKAGQMFVLEDLIKASAVYSANNATYAIAEYVGNGSVFSFVAKMNKKLKEYGLQN 234
Query: 150 -THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF------QIKGLEIKGKKYPN 202
+ G+ + + + + + N
Sbjct: 235 EIKYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKSTKIHNGKISIRN 294
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N +G G G+KTGF + +NI ++ +I V++G TR+ + S+L +
Sbjct: 295 RNHLIGEN-GVYGIKTGFHKEAKYNIAVASKFEGTDVIIVVMGGETYKTRDGIVLSVLDI 353
Query: 263 GFYNKTDR 270
N T +
Sbjct: 354 LNSNYTIK 361
>gi|256846732|ref|ZP_05552188.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp.
3_1_36A2]
gi|256717952|gb|EEU31509.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp.
3_1_36A2]
Length = 425
Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 64/250 (25%), Positives = 100/250 (40%), Gaps = 10/250 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ DT G+VI D + AS+TK+M+ V F + L + ISKN +
Sbjct: 171 RAVIVGDTK-GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKNPLK 229
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGL 147
Y S K G L++ +K V SAN+ AIAE + K + FV MN K LGL
Sbjct: 230 YGGSGIALKAGQMFVLEDLIKASAVYSANNATYAIAEYVGKGSVFSFVTKMNRKLKELGL 289
Query: 148 SA-THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF------QIKGLEIKGKKY 200
+ G+ + + + + +
Sbjct: 290 QNEIRYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKSTKIHNGKISI 349
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N +G G G+KTGF + +NI ++ D +I V++G TR+K+ S+L
Sbjct: 350 RNRNHLIGEN-GVYGIKTGFHKEAKYNIAVASKFQDTDVIIVVMGGETYKTRDKIVLSVL 408
Query: 261 SMGFYNKTDR 270
+ N T +
Sbjct: 409 DILNNNYTVK 418
>gi|295398159|ref|ZP_06808208.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
gi|294973678|gb|EFG49456.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563]
Length = 469
Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/289 (17%), Positives = 104/289 (35%), Gaps = 30/289 (10%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ + ++D+ +G ++ + ASLTKL+ +VV+ + +
Sbjct: 56 IATNYELNIDAAMVIDSESGQILYDQNGADLHGIASLTKLIALFVVYDEIAAGNLSFDSK 115
Query: 80 ITISKNASEYP-----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ +S+ SE + + T+D + ++ S N VA+AE + +E+ F
Sbjct: 116 VPVSEAVSELSVAAGLSNVPLEESTDYYTVDALIDAAVIGSGNAAVVALAEYIAGSEQSF 175
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVV----------------QHGHYTTARDMAILSWRIK 178
V+ M++ LG+ A G+ + ARD+ ++ I
Sbjct: 176 VEMMDDKLTELGIKDFELYTASGLAGSWLTTTDGSASPYSIDQENMMQARDILFVAREIV 235
Query: 179 TDFPQYMHYFQIKGLEIKGKKY-------PNTNWAVGTF--LGADGMKTGFTCASGFNIV 229
++P + + E + N + G+KTG +G I+
Sbjct: 236 NEYPDVLERSNVTSKEFQVSDTETYTLESTNLFLPGNAYERDDVSGLKTGTESIAGRCII 295
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+ + ++ V LGA + R + +LL+ N
Sbjct: 296 IMSQIDGRDIMLVTLGAETEDERYVNTGTLLTALQENLAYTTLYEEGAP 344
>gi|89893842|ref|YP_517329.1| hypothetical protein DSY1096 [Desulfitobacterium hafniense Y51]
gi|219668209|ref|YP_002458644.1| serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
hafniense DCB-2]
gi|89333290|dbj|BAE82885.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219538469|gb|ACL20208.1| Serine-type D-Ala-D-Ala carboxypeptidase [Desulfitobacterium
hafniense DCB-2]
Length = 324
Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 11/237 (4%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L+ ++ + PASLTK+MTA + L + + +
Sbjct: 69 LNSSQAILVRLKDQKILMGKGSEEKIYPASLTKIMTAILAIENLPNLQEKIRLSQATFQG 128
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
+ S + F+ +++ + L +++ S + V +AE + +E+KF MN + L
Sbjct: 129 LYQANASMTGFQPEEQVSVMDLLYGVMLPSGAESCVGLAERIAGSERKFALLMNQKAAEL 188
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
G++ THF NA G+ HYTT +D+A+L + + + K+P
Sbjct: 189 GMNHTHFENATGLHAENHYTTVKDLAVLLSYALQNDLFREVFTASRHSTPPTNKHPGGIT 248
Query: 206 AVGTFLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
T G KTG+T +G + + A G + I + GA +
Sbjct: 249 FYSTMFSVLGSSKIAGGEILGGKTGYTDEAGLCLASLAQVGKEQYILITAGAKGNHD 305
>gi|118161406|gb|ABK64087.1| putative carboxypeptidase [Janthinobacterium lividum]
Length = 583
Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 48/242 (19%), Positives = 83/242 (34%), Gaps = 10/242 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + D +G V+ D AS+TKLMTA VV + I +
Sbjct: 337 PVSAKHMLVFDDASGKVLMAKDADAVVPIASITKLMTAMVVLDAG----LDPDEQLRIVR 392
Query: 85 NASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + ++ L+L ++ S N A A+A + F Q + +
Sbjct: 393 ADGDSSLQRHSLLADGVAVSRGALLQLALLPSENRAAAALARTYPGGNAAFAQALQAKIR 452
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKY 200
+LGLS T G + +TA ++A + + K +
Sbjct: 453 HLGLSRTTLTEPVG-SSPANTSTAIEVAKIVAAAARYPDIARITSHPQASVAVNGKTRTL 511
Query: 201 PNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
NTN VG KTG + +G + G + + V+L A R+ + +
Sbjct: 512 HNTNPLVGGKGWDILLSKTGSSNEAGSCLTMRMRSGGKHVTVVLLDADGAQRRSLDAGHI 571
Query: 260 LS 261
Sbjct: 572 RD 573
>gi|22536331|ref|NP_687182.1| penicillin-binding protein 4 [Streptococcus agalactiae 2603V/R]
gi|76787492|ref|YP_328877.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909]
gi|77405132|ref|ZP_00782231.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae H36B]
gi|22533155|gb|AAM99054.1|AE014198_2 penicillin-binding protein 4, putative [Streptococcus agalactiae
2603V/R]
gi|76562549|gb|ABA45133.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae A909]
gi|77176275|gb|EAO79045.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae H36B]
Length = 395
Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 74/333 (22%), Positives = 134/333 (40%), Gaps = 54/333 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------------------NKLPYYTLLDTNTGHVI 42
M + +V +LS AE NK ++D N GH++
Sbjct: 1 MPKLIVSFLCILLSLTCVNSVQAEEHKDIMQITREAGYDVKDINKPKASIVID-NKGHIL 59
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKK 98
E+ D +PAS++K+ T Y++F L + K L T +T ++ SN+
Sbjct: 60 WEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVTATETDQAISKIYEISNNNIHA 119
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
G + + + V S+N + IA F++ +N T+K LG++ THF N G
Sbjct: 120 GVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRINETAKKLGMTKTHFYNPSG 179
Query: 158 ---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ TTARD++IL++ +P ++Y + ++
Sbjct: 180 AVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDILNYTKYPEVKAMVGTPYE 239
Query: 203 TNWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-- 251
+ + G DG+KTG + ++ FN + +A + + LI V+LG D +
Sbjct: 240 ETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQNTRLITVVLGVGDWSDQD 299
Query: 252 ----RNKVSASLLSMGFYNKTDRKKINYIIKDF 280
R+ +L+ GF + + ++K
Sbjct: 300 GEYYRHPFVNALVEKGFKDAKNISSKTPVLKAV 332
>gi|145504310|ref|XP_001438127.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124405288|emb|CAK70730.1| unnamed protein product [Paramecium tetraurelia]
Length = 319
Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/277 (21%), Positives = 106/277 (38%), Gaps = 33/277 (11%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI- 80
+ ++ T G + P ASLTK+MTAY ++
Sbjct: 19 NPPQTTALSWCIV-TQIGDELVSKSPSLKLEVASLTKIMTAYTAIQLCEDLNLDYNEINI 77
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC------------ 128
I + A++ +++ ++ ++L L L++ S ND A++IA
Sbjct: 78 RIPRIATQIGGTSAFLRRDDILSLVELLYALMLPSGNDAAISIALHFGSILNTQRKQKIA 137
Query: 129 -----------------KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+FV+ MN + LG+ + F N HG+ + +TA DM
Sbjct: 138 SYITCDTIQGFYDDTQMSNMNRFVRQMNENAMKLGMRDSQFSNPHGLSSKANKSTASDMC 197
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
+S P K + ++ NTN + F +G+KTG T +G + S
Sbjct: 198 RMSSAYL-KIPVLKQICNSKSFSCRNYEWFNTN-QLLHFENYNGIKTGITPNAGACLAVS 255
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
S+I V++GA D+ R + + L++ +
Sbjct: 256 YESVLGSIIVVLIGAKDQKRRFEETDKLINWVSREYS 292
>gi|77409047|ref|ZP_00785765.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae COH1]
gi|77172341|gb|EAO75492.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae COH1]
Length = 395
Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 74/333 (22%), Positives = 134/333 (40%), Gaps = 54/333 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------------------NKLPYYTLLDTNTGHVI 42
M + +V +LS AE NK ++D N GH++
Sbjct: 1 MPKLIVSFLCILLSLTCVNSVQAEEHKDIMQITREAGYDVKDINKPKASIVID-NKGHIL 59
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKK 98
E+ D +PAS++K+ T Y++F L + K L T +T ++ SN+
Sbjct: 60 WEDNADLERDPASMSKMFTLYLLFEDLAKGKTNLNTTVTATETDQAISKIYEISNNNIHA 119
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
G + + + V S+N + IA F++ +N T+K LG++ THF N G
Sbjct: 120 GVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRINETAKKLGMTKTHFYNPSG 179
Query: 158 ---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ TTARD++IL++ +P ++Y + ++
Sbjct: 180 AVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDILNYTKYPEVKAMVGTPYE 239
Query: 203 TNWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-- 251
+ + G DG+KTG + ++ FN + +A + + LI V+LG D +
Sbjct: 240 ETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQNTRLITVVLGVGDWSDQD 299
Query: 252 ----RNKVSASLLSMGFYNKTDRKKINYIIKDF 280
R+ +L+ GF + + ++K
Sbjct: 300 GEYYRHPFVNALVEKGFKDAKNISSKTPVLKAV 332
>gi|218680596|ref|ZP_03528493.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli CIAT 894]
Length = 246
Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/190 (34%), Positives = 109/190 (57%), Gaps = 2/190 (1%)
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
++ T++ FV MN + LG++ +HF+N +G+ G YTTARD+A+L+ ++ DFPQY
Sbjct: 1 AIGGTQEGFVTRMNGEALKLGMTDSHFVNPNGLPGKGQYTTARDLAVLTVALRRDFPQYA 60
Query: 186 HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
YF ++G + P+ N +G F GADGMKTGF CASGFN + SA + ++L++V+LG
Sbjct: 61 GYFALEGFTNGQQNVPSLNMLIGRFAGADGMKTGFICASGFNQIGSATRNGRTLVSVVLG 120
Query: 246 ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
R +A+LL GF + + ++ + +V +IS ++C+ + I
Sbjct: 121 TDSLAARADATANLLQKGFTTQFPGSETLGSLRPYGPGQD--QVADISADICSAKGAKIR 178
Query: 306 YNTQMKEAKD 315
T+ + +
Sbjct: 179 SETRDEVGRM 188
>gi|294784444|ref|ZP_06749735.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_27]
gi|294488016|gb|EFG35371.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium sp. 3_1_27]
Length = 425
Score = 98.1 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 64/250 (25%), Positives = 100/250 (40%), Gaps = 10/250 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ DT G+VI D + AS+TK+M+ V F + L + ISKN +
Sbjct: 171 RAVIVGDTK-GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLNDSVRISKNPLK 229
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-TEKKFVQHMNNTSKNLGL 147
Y S K G L++ +K V SAN+ AIAE + K + FV MN K LGL
Sbjct: 230 YGGSGIALKVGQMFVLEDLIKASAVYSANNATYAIAEYVGKGSVFSFVTKMNRKLKELGL 289
Query: 148 SA-THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF------QIKGLEIKGKKY 200
+ G+ + + + + +
Sbjct: 290 QNEIRYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKSTKIHNGKISI 349
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N +G G G+KTGF + +NI ++ D +I V++G TR+K+ S+L
Sbjct: 350 RNRNHLIGEN-GVYGIKTGFHKEAKYNIAVASKFQDTDVIIVVMGGETYKTRDKIVLSVL 408
Query: 261 SMGFYNKTDR 270
+ N T +
Sbjct: 409 DILNNNYTVK 418
>gi|54309061|ref|YP_130081.1| D-alanyl-D-alanine endopeptidase [Photobacterium profundum SS9]
gi|46913493|emb|CAG20279.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium
profundum SS9]
Length = 316
Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/274 (17%), Positives = 94/274 (34%), Gaps = 17/274 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R L I ++ + + + D +G + + + A
Sbjct: 21 RALLFIFSLVSVGIATSAHATTAKLDPNNIQTASVSTYVTDLKSGKTLYKKNQNVVMPLA 80
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
S+TKLMTA V K L IT + + + S ++ + + ++
Sbjct: 81 SITKLMTAMVTLDA----KLPLDEKITFKPIDKKRMYNGYTRIRMESRLSRGETIHIALM 136
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S N A A+A S F++ MN +K LG++ T F+++ G+ T + +
Sbjct: 137 SSENLAAAALAGSYPGGYDAFIKAMNAKAKALGMTNTRFVDSSGLDPKNVSTASDINKMA 196
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVGTFLG-ADGMKTGFTCASGFNI 228
K + + + K Y NTN + KTG+ +G +
Sbjct: 197 KAAYKYTKIREYSTTPVHTVYFTKPKYKLGYTNTNVLARGKKWDVEMTKTGYLDIAGHCL 256
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+ ++ V+L A + T + +
Sbjct: 257 TMITKINGKEILMVMLDAQGKLTPIGDAGRIKKW 290
>gi|313616428|gb|EFR89354.1| serine-type D-Ala-D-Ala carboxypeptidase [Listeria innocua FSL
S4-378]
Length = 220
Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/216 (28%), Positives = 110/216 (50%), Gaps = 6/216 (2%)
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
ASLTKLMTA++V + KK + + + S + T ++ + ++V
Sbjct: 5 ASLTKLMTAFLVLEAVDNKKLSWDEELDLIRLDDPSAVSLYAITQKRTWSVRDLYSAMLV 64
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA-THFMNAHGVVQHGHY--TTARDM 170
SAND A + + F Q MNN +K LGLS+ T F++A G+ G +T +D+
Sbjct: 65 MSANDAAETLG--NRLDDANFPQKMNNEAKKLGLSSKTKFVSASGLDVDGKMAVSTTKDL 122
Query: 171 AILSWRIKTDFPQYMHYFQIK-GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+LS ++ + P+ + + +G +TN ++G+ G DG+KTGFT +G+ +
Sbjct: 123 FLLSSKLISTHPEVLETTSKSSIITEEGATLESTNDSIGSIQGLDGLKTGFTDEAGYCFI 182
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
+A + + +I+++L A R K + L+ +GF
Sbjct: 183 GTAKRDGKRVISIVLDADTAKKRFKDTEKLMGIGFK 218
>gi|253577898|ref|ZP_04855170.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850216|gb|EES78174.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 356
Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 62/246 (25%), Positives = 97/246 (39%), Gaps = 22/246 (8%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP- 90
L + V+ N PAS+TK+MTA + K L +TI+++
Sbjct: 111 LLFSLSNHKVLYANGIYDKVYPASITKIMTAMLALQSGK-----LNDTVTITQDNVTLED 165
Query: 91 -PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
F G +TLD L L+V S ND A AIAE + + + FVQ MN+ + LG +
Sbjct: 166 GSQVCGFVAGDQVTLDQLLHCLLVYSGNDAASAIAEYVGGSTENFVQMMNDYAAKLGCTG 225
Query: 150 THFMNAHGVVQHGHYTTARDMAILSW--RIKTDFPQYMHYFQIKGLEIK----------- 196
THF N HG+ HYTT D+ ++ +F +
Sbjct: 226 THFSNPHGLQDENHYTTPYDIYLMLNEAFTYPEFTEITELPSYTVTYTGSDGTEKSTTLT 285
Query: 197 -GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNTRNK 254
Y + G KTG T +G + ++ +++++GA + +
Sbjct: 286 ATDHYLTGEATAPKDVTILGGKTGTTEVAGNCLAILTQNAYGKTFVSIVMGAATKELLYQ 345
Query: 255 VSASLL 260
SLL
Sbjct: 346 EMNSLL 351
>gi|300313783|ref|YP_003777875.1| D-alanyl-D-alanine carboxypeptidase [Herbaspirillum seropedicae
SmR1]
gi|300076568|gb|ADJ65967.1| D-alanyl-D-alanine carboxypeptidase protein [Herbaspirillum
seropedicae SmR1]
Length = 385
Score = 98.1 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 52/242 (21%), Positives = 94/242 (38%), Gaps = 8/242 (3%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+LD TG + E D AS+TKLMTA V + + + ++++
Sbjct: 141 IFSRGVYVLDEQTGTPLFERNADTVAPIASVTKLMTAIVWLDQKQ---LAMGNRLEVTED 197
Query: 86 ASEYPPSNSTF-KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ + G++++ + L + ++ S N A A++ F+ MN ++
Sbjct: 198 DLDTLKFTHSRLGVGASLSRADMLHIALMSSENRAAAALSRDYPGGRPAFIAAMNARAQA 257
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
LG+S THF NA G+ T A++ + + + K + I + N
Sbjct: 258 LGMSHTHFENATGLSPENVSTPRELAALVQAANRYQLIRNDSLDKQKMINIGRGQLQYIN 317
Query: 205 WAVGTFLG---ADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLL 260
G A KTGF SG N+V + D+ +I +LG+ + +
Sbjct: 318 SNRLIRYGQVNASVQKTGFINESGHNMVLRMLVHDRRPVIVTMLGSGSADGSRLDGVRIA 377
Query: 261 SM 262
Sbjct: 378 KW 379
>gi|302670839|ref|YP_003830799.1| D-alanyl-D-alanine carboxypeptidase DacA2 [Butyrivibrio
proteoclasticus B316]
gi|302395312|gb|ADL34217.1| D-alanyl-D-alanine carboxypeptidase DacA2 [Butyrivibrio
proteoclasticus B316]
Length = 329
Score = 97.7 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 70/251 (27%), Positives = 100/251 (39%), Gaps = 18/251 (7%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L D + + PASLTK+MTAYV K
Sbjct: 78 TDSVSAGLFDLTNRETLFAQNVNDRVMPASLTKVMTAYVAL---KYGSLEQVLVAGSDVY 134
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
+E K+G MTLD AL +L++ SAND+A IA ++ + ++FV MN + +
Sbjct: 135 VNESGAQKIGLKEGDRMTLDQALHILLIYSANDVANLIASNISGSIEEFVNTMNAEAYAI 194
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMA--------ILSWRIKTDFPQYMHYFQIKGLEIKG 197
G + THF N +G+ HY TA DM ++ + Y + K
Sbjct: 195 GATKTHFENPNGLTSDEHYVTAYDMYLIFNAAMQYDTFSEIINMNSYTTSYIDATGASKD 254
Query: 198 KKYPNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRN 250
NTN V + + G KTG T A+G ++ A IAVI+ D
Sbjct: 255 VDISNTNGFLTGAKPVPSGVTVIGGKTGTTQAAGHCLILLARDTAGNPYIAVIMRDTDSG 314
Query: 251 TRNKVSASLLS 261
T A LL+
Sbjct: 315 TLYNDMAQLLN 325
>gi|331091254|ref|ZP_08340095.1| hypothetical protein HMPREF9477_00738 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404701|gb|EGG84240.1| hypothetical protein HMPREF9477_00738 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 235
Score = 97.7 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 11/199 (5%)
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK------- 199
+ THF+N +G+ GH TTARD+A++S + T +P+ Y +I I +
Sbjct: 1 MKNTHFVNCNGLDADGHLTTARDIALMSRELITKYPEVHKYTKIWQENITHETKKGTSKF 60
Query: 200 -YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
NTN + + A G+KTG T + F + A+A + +LIAV++ + + R K + +
Sbjct: 61 GLTNTNKFIRQYPYATGLKTGSTGKAKFCLSATAEKDKVNLIAVVMASPNAKQRVKDAVT 120
Query: 259 LLSMGF---YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
L++ GF D I + ++ + + K+ K
Sbjct: 121 LMNYGFGKCRKYEDEAPIKIKEVQVKRGQEEAVDIQAEKKFKYIDSSGSDLSNIKKKVKM 180
Query: 316 KESHFIDFEKITLLKNKIT 334
KE+ +K L I
Sbjct: 181 KENISAPIKKGEKLGRVIY 199
>gi|254248244|ref|ZP_04941564.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia
PC184]
gi|124874745|gb|EAY64735.1| D-alanyl-D-alanine carboxypeptidase [Burkholderia cenocepacia
PC184]
Length = 326
Score = 97.4 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 8/255 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+L++ + +LD ++G + AS++KLMTA V + +
Sbjct: 70 LLASCGYTPRAVGSLHSRAAYVLDVDSGTPLLARNARTVRPIASISKLMTAVVARNADRP 129
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+L ++ + S + GS ++ + ++ S N A A++
Sbjct: 130 LNGVLRVTA---RDRDTIKFTGSRLQVGSELSRREMFHIALMSSENRAAAALSRDYPGGR 186
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH----Y 187
FV+ MN ++ LG+ THF G+ + +TA D+A L D
Sbjct: 187 AAFVKAMNREARRLGMRHTHFREPTGL-SPHNVSTAEDLARLVGAAAQDPLIRYFSTDLS 245
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
++ + + + L KTGF SG +V + V+LGA
Sbjct: 246 TTVRPGDGELVYVNSDPLVRYRRLPIRLQKTGFINESGHGVVMRMRVKGRRETVVLLGAA 305
Query: 248 DRNTRNKVSASLLSM 262
R + + +
Sbjct: 306 TRAGVSSDAIKIHRW 320
>gi|168070883|ref|XP_001786972.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162660038|gb|EDQ48214.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 228
Score = 97.4 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 24/205 (11%)
Query: 6 VIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
+ +++A+L+ + LL+ TG ++ PD P PAS++
Sbjct: 24 LFLSVAVLATAMGGAATKADAAPAADLQLAAKSAILLEATTGKILYATNPDVPLPPASMS 83
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS----TFKKGSTMTLDNALKLLIV 113
K+M+ Y+V +K+KK + +S+ A + G + ++ K + V
Sbjct: 84 KMMSEYLVQEAVKQKKISWDEQVPVSEYAFYVAKISDASGVYLNAGESFSVKELYKAMAV 143
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH------------ 161
SAND V +AE + +E FVQ MN +K LG++ T F+ + G+ +
Sbjct: 144 VSANDATVLLAEKVAGSEPNFVQMMNKKAKELGMTNTSFVTSTGLPANELGPYSVQTDQV 203
Query: 162 GHYTTARDMAILSWRIKTDFPQYMH 186
+ +ARD AIL+ + DFP+ +
Sbjct: 204 ENLMSARDSAILARALIRDFPEAIE 228
>gi|262197058|ref|YP_003268267.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Haliangium
ochraceum DSM 14365]
gi|262080405|gb|ACY16374.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Haliangium
ochraceum DSM 14365]
Length = 340
Score = 97.4 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 56/241 (23%), Positives = 94/241 (39%), Gaps = 15/241 (6%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ P +LD TG + + D AS K+ A VV +E+ L IS
Sbjct: 53 PNVQAPRAVILDAETGEPLFAKHADEVAAIASTGKIFVAMVV----RERGIDLEAVTEIS 108
Query: 84 K--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ + + G + L+ ++V S N +A+ ++ + ++ V MN+
Sbjct: 109 EVDRMYARGGARTRLDVGHGFRNIDLLRAMLVSSDNRAPIALGRAVGLSPEQLVAAMNHM 168
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK------GLEI 195
+ LGL T F G+ G+ +TA +MAI D + +
Sbjct: 169 ASELGLRHTRFTCPSGL--RGNVSTAYEMAIALRAALADPVLAEIMGTAEVNVRSLHSKP 226
Query: 196 KGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNK 254
+ Y NTN ++ G KTGFT A+G+ +V +A + +I G TR
Sbjct: 227 RAIDYRNTNLSLRRSSFEVLGGKTGFTRAAGYCLVVAARLAGRDVIMAFFGETHELTRFG 286
Query: 255 V 255
Sbjct: 287 D 287
>gi|221635723|ref|YP_002523599.1| D,D carboxypeptidase [Thermomicrobium roseum DSM 5159]
gi|221158037|gb|ACM07155.1| D,D carboxypeptidase [Thermomicrobium roseum DSM 5159]
Length = 323
Score = 97.4 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/253 (22%), Positives = 100/253 (39%), Gaps = 23/253 (9%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
++D T ++ E P PAS KL+TA L ++ +
Sbjct: 67 LSARSVLVVDLTTDRILLERASRTPLPPASTLKLLTALTAVEILSFEEI---VTVQPEDT 123
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES---------LCKTEKKFVQ 136
S G T+T+ + L L++ S ND A A+A S ++F+
Sbjct: 124 VDPARESAMGLDVGDTITVHDLLLGLLLPSGNDAARALARSAGERLAGPPDRPPRERFLV 183
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP------QYMHYFQI 190
M ++ LGLS T + G G T+ARD+ L+ ++
Sbjct: 184 AMQEKARELGLSETVVLTPDGDDVPGQTTSARDLLQLARATLDHPELAALVALRTAQVRV 243
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILGALDR 249
G + + + NTN +G G G+KTG T +G +VA+ ++ +A++LG+ D
Sbjct: 244 GGPKARVLELRNTNELLGQH-GVIGIKTGTTPEAGQCLVAAWRTSDGRTFVAIVLGSQD- 301
Query: 250 NTRNKVSASLLSM 262
R +++
Sbjct: 302 --RYGDMRAIIDW 312
>gi|17987196|ref|NP_539830.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase
fraction C) [Brucella melitensis bv. 1 str. 16M]
gi|260564074|ref|ZP_05834560.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
16M]
gi|265991153|ref|ZP_06103710.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
str. Rev.1]
gi|17982866|gb|AAL52094.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase
fraction c) [Brucella melitensis bv. 1 str. 16M]
gi|260154090|gb|EEW89182.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis bv. 1 str.
16M]
gi|263001937|gb|EEZ14512.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 1
str. Rev.1]
Length = 205
Score = 97.4 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 1/182 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A ++ L + + + D ++G ++ ++ PASL K+MT Y+ F
Sbjct: 24 FFASVAFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEA 83
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 84 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 143
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 144 GSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYAL 203
Query: 188 FQ 189
F
Sbjct: 204 FS 205
>gi|118381024|ref|XP_001023674.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila]
gi|89305441|gb|EAS03429.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila SB210]
Length = 1098
Score = 97.4 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 58/308 (18%), Positives = 114/308 (37%), Gaps = 55/308 (17%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML-TTPI 80
+++ +++T I + ASLTK+MT YV FL+E + + I
Sbjct: 773 QPPEVSSKCWSVFNSDTNEFIFGKSHNFQVEIASLTKIMTCYVTIKFLEENQLDIKNVFI 832
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL------------- 127
+SK A++ + + +KG ++ L L++ S ND AV ++E +
Sbjct: 833 EVSKAATKTIGTTANLEKGDFVSTYELLYGLMLPSGNDAAVVLSEGVGYLLYCQQSKLSF 892
Query: 128 ----------------------------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ F++ MN ++ +GL T++ HG+
Sbjct: 893 TNDNTSSGVPGDQKIYVNYKCKSEAGGLNQCMNIFIKEMNKQAQKVGLERTNYACVHGLS 952
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------- 211
+ +TA+D+ +LS + + + +N +
Sbjct: 953 NKYNTSTAKDVGLLSCIVMKHPLIQKVVNTKEYETVDVLDQEKSNQDQYEWENTNQMLEK 1012
Query: 212 -GADGMKTGFTCASGFNIVASAI--QGDQS--LIAVILGALDRNTRNKVSASLLSMGFYN 266
G DG+KTG T +G + +S + + LI V+L + R + L+ +
Sbjct: 1013 KGYDGVKTGVTETAGPCLSSSYKCKRNGKQVGLICVLLNCKSMDHRWPETKQLIKWALKS 1072
Query: 267 KTDRKKIN 274
++K
Sbjct: 1073 YFPKEKKQ 1080
>gi|239637166|ref|ZP_04678158.1| penicillin binding protein 4 [Staphylococcus warneri L37603]
gi|239597298|gb|EEQ79803.1| penicillin binding protein 4 [Staphylococcus warneri L37603]
Length = 412
Score = 97.4 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 70/360 (19%), Positives = 142/360 (39%), Gaps = 50/360 (13%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYY---------------TLLDTNTGHVIAE 44
M++ F ++ + M + AE + + ++ T G ++ +
Sbjct: 1 MKKVFTSLMMIMMCLVLISPTVFAEQSPVDVAKQEHQDIDKQYNPKGMIVTTKDGQILYD 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGS 100
+ +PAS TKLMT +V+ +K K + + I+ + + K+G+
Sbjct: 61 YHGSTQVDPASTTKLMTMNLVYDDIKSGKIKMNDKVKITSRYEKMSELPNLTTFPLKEGT 120
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG--- 157
T+T++ LK ++S+N + +AE + + KF MN +K+LG+ T F N G
Sbjct: 121 TVTINQLLKQAALESSNAATLVLAEHIDGSSSKFTDRMNQKAKDLGMKDTTFTNPSGANN 180
Query: 158 -----------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204
+TTARDM++LS I P + ++ + ++ NTN
Sbjct: 181 KILKPYEPKSYKDDTISHTTARDMSLLSNHILNAHPDVLKITKLSKDKQSNQELHNTNTS 240
Query: 205 --WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL------DRNTRNKVS 256
DG+KTG T +G+N+ +A + ++ I ++ R K++
Sbjct: 241 LPNEADGMKDVDGLKTG-TSDNGYNLELTAKRNHLRIVTGIFNVKPYPDEQAKHARQKLA 299
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
+L F RK I+ + + + + +++ + + ++
Sbjct: 300 NALTEHAFKQYDYRKVISKGEHE-----IDGKKYEVKKDLYDLVPKDKSKYQLKVSDDNQ 354
>gi|265994989|ref|ZP_06107546.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
str. Ether]
gi|265999456|ref|ZP_06111697.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
str. 63/9]
gi|262766102|gb|EEZ11891.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella melitensis bv. 3
str. Ether]
gi|263094078|gb|EEZ18000.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
str. 63/9]
Length = 205
Score = 97.4 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 1/182 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A ++ L + + + D ++G ++ ++ PASL K+MT Y+ F
Sbjct: 24 FFASVAFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEA 83
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 84 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 143
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 144 GSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYAL 203
Query: 188 FQ 189
F
Sbjct: 204 FS 205
>gi|153814890|ref|ZP_01967558.1| hypothetical protein RUMTOR_01105 [Ruminococcus torques ATCC 27756]
gi|331089590|ref|ZP_08338489.1| hypothetical protein HMPREF1025_02072 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847921|gb|EDK24839.1| hypothetical protein RUMTOR_01105 [Ruminococcus torques ATCC 27756]
gi|330404958|gb|EGG84496.1| hypothetical protein HMPREF1025_02072 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 350
Score = 97.4 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 57/229 (24%), Positives = 91/229 (39%), Gaps = 18/229 (7%)
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
PAS TK+MTAY+ K ++ + + S G ++TL + +
Sbjct: 123 KLYPASTTKVMTAYLAL---KYGNLDDVVTMSATSTNFNWDESTCGLSAGDSLTLYDLIC 179
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
L+++S ND A AIAE + +++ F + MN +K LG + THF+N HG+ HYTT D
Sbjct: 180 GLLLQSGNDCAAAIAEHISGSQEAFAELMNTEAKQLGATGTHFVNPHGLHDENHYTTTYD 239
Query: 170 MAILSWRIKTDF--------------PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADG 215
+ ++ D Y + G
Sbjct: 240 LYLMFNEALKDQAFLDIISMNSYTAKVTSADGTSYTPTWQATNYYSAGEATPPDGIHVYG 299
Query: 216 MKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTRNKVSASLLSMG 263
KTG T +G ++ + I+VI+GA D+ + LL G
Sbjct: 300 GKTGTTDQAGNCVILYEKNTAGEPYISVIMGASDKPLLYEEMNELLDAG 348
>gi|331001799|ref|ZP_08325321.1| hypothetical protein HMPREF0491_00183 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412773|gb|EGG92156.1| hypothetical protein HMPREF0491_00183 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 327
Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 21/252 (8%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK-EKKAMLTTPITIS 83
L+ + G ++A PAS TK+MTA V + + + IS
Sbjct: 76 DISSESIILV-STEGSLLASKAATKRMYPASTTKVMTALVALKYGNLSDEITVPEESVIS 134
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + N G +TLD L L++ S ND A AIA + + FV+ MN+ +K
Sbjct: 135 EAGASLAGLN----PGDKLTLDELLYGLMLPSGNDAANAIAVHIGGSVDNFVRMMNDEAK 190
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK------- 196
+G T+FMNAHG+ HYTTA D+ ++ D +
Sbjct: 191 RIGAVDTNFMNAHGLSDENHYTTAYDLYLIFNEALKDSRFLNYAGTASYNVSYIAADGSE 250
Query: 197 -GKKYPNTNWA---VGTFLG---ADGMKTGFTCASGFNI-VASAIQGDQSLIAVILGALD 248
K + N N G + KTG T A+G + + S + I+V+L + +
Sbjct: 251 VTKSWRNGNRYLTGQVATPGGLVVEAGKTGTTLAAGSCLVICSENKEGSKYISVVLKSKN 310
Query: 249 RNTRNKVSASLL 260
R + LL
Sbjct: 311 RADLYDNMSKLL 322
>gi|261222159|ref|ZP_05936440.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
gi|265998124|ref|ZP_06110681.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
gi|260920743|gb|EEX87396.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti B1/94]
gi|262552592|gb|EEZ08582.1| serine-type D-Ala-D-Ala carboxypeptidase [Brucella ceti M490/95/1]
Length = 199
Score = 97.0 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 5/185 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A+ + + K P L+D +G V+ D P PASL KLMTA
Sbjct: 15 LLGTVFAAVPPAWAAPANSSIVTKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAE 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAND 118
VVF L++ + L T +S+ A S + ST T+ + L+ +IV+SAND
Sbjct: 75 VVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSAND 134
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A+ +AE L +E+ F MN +K LGLS++ F+N+ G+ G T D+ L+ I
Sbjct: 135 GAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNLARHIH 194
Query: 179 TDFPQ 183
P+
Sbjct: 195 AAHPE 199
>gi|227485595|ref|ZP_03915911.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus lactolyticus ATCC
51172]
gi|227236461|gb|EEI86476.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus lactolyticus ATCC
51172]
Length = 289
Score = 97.0 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 51/261 (19%), Positives = 96/261 (36%), Gaps = 18/261 (6%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+S + + L D + + ASLTK+MT V ++
Sbjct: 18 VFISTRVKKQAEDQNFISKAVYLYDLTDDKEVLAKNENERLPMASLTKIMTVRVALKHIR 77
Query: 71 E-KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ + + E S + F G T T + L +++SA + A ++A ++
Sbjct: 78 DLGQIAPVDTDAYYRA-VEMNASMAGFNGGETTTYRDLLYATMLRSAGEAADSLAINISG 136
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+ KFV MN +K+L L T + NA G+ +Y +A+D A+L D + +
Sbjct: 137 SMDKFVDLMNQEAKDLKLKNTSYANADGMDNPSNYQSAKDCAMLIKDSLKDGNFRAIFTK 196
Query: 190 IKGLEIKGKKYP-------NTNWAVGTFLG----ADGMKTGFTCASGFNIVASAIQGDQS 238
+P + + + G K+G T +G A++ ++
Sbjct: 197 KDFKTSPTVNHPDGVYLESTIFYHLKKYQQNGFEIIGGKSGTTDDAGLCWATLAVKNNKE 256
Query: 239 LIAVILGALDRNTRNKVSASL 259
I V++G +L
Sbjct: 257 YILVVMGVP-----YDDINNL 272
>gi|326409095|gb|ADZ66160.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
melitensis M28]
gi|326538799|gb|ADZ87014.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase
fraction C) [Brucella melitensis M5-90]
Length = 192
Score = 97.0 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 52/182 (28%), Positives = 87/182 (47%), Gaps = 1/182 (0%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A ++ L + + + D ++G ++ ++ PASL K+MT Y+ F
Sbjct: 11 FFASVAFGTAVLCASGAMASTSWVVFDADSGRMLGQDDASAQHAPASLAKMMTLYLTFEA 70
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK + + ISKNA+ K G T++ +A+ +I+ SAND A + E L
Sbjct: 71 LKTGRLHWDDALPISKNAASKVRMKLWLKAGDTISTRDAVNGMIIVSANDAATVMGEYLA 130
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHY 187
+E F + M ++ +G+ +T F N G+ TTARDMA+L ++ DFP+
Sbjct: 131 GSEAAFARLMTQRARQIGMKSTIFANPSGLTANVSQLTTARDMAVLGMALRRDFPEEYAL 190
Query: 188 FQ 189
F
Sbjct: 191 FS 192
>gi|331091259|ref|ZP_08340100.1| hypothetical protein HMPREF9477_00743 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404706|gb|EGG84245.1| hypothetical protein HMPREF9477_00743 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 125
Score = 97.0 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 1 MRQFLVIIAMAMLS---NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M+ + +I +L + +++ +TG +I E D PAS+T
Sbjct: 1 MKVIVSVIISCLLLGECVYAAPQKEEAKIEAVSGIVMEASTGKMIYEKNADEKLPPASVT 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MT ++F ++ + L +T+S+ A+ S + G T T++ LK + V SAN
Sbjct: 61 KVMTMLLIFDAIESGEIKLEDNVTVSEFAASMGGSQVFLEPGETQTVETMLKCIAVASAN 120
Query: 118 DIAV 121
D V
Sbjct: 121 DACV 124
>gi|331083982|ref|ZP_08333089.1| hypothetical protein HMPREF0992_02013 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330402344|gb|EGG81914.1| hypothetical protein HMPREF0992_02013 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 301
Score = 97.0 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 54/238 (22%), Positives = 85/238 (35%), Gaps = 12/238 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
LLD G ++ + PASLTK+MT + L + + I
Sbjct: 47 ELYSEAAILLDEE-GQILGRKNSEKKIYPASLTKIMTVLLSIEKLDNIREITVLREEIFP 105
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
S + F G +T + L ++ S + VA+AE C +EK+FV MN +K
Sbjct: 106 ELYAQDASMAGFLPGEKVTYRDLLYGAMLPSGAECCVALAEGSCGSEKEFVSEMNKKAKK 165
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD-----------FPQYMHYFQIKGL 193
L + THF N G+ HYTT D++ L + + +G
Sbjct: 166 LVMKNTHFTNTTGLHDDNHYTTVEDLSRLLCYAMKNQDFSKIFTAFSYSVPATNKHPEGF 225
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
A G KTG+T +G + +A + + A +
Sbjct: 226 TFFSTLSQELQKAGVKDSCILGGKTGYTSNAGLCLATAAEINGKKYFFITAHAQGSHN 283
>gi|313906127|ref|ZP_07839476.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium
cellulosolvens 6]
gi|313469014|gb|EFR64367.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium
cellulosolvens 6]
Length = 544
Score = 97.0 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 57/249 (22%), Positives = 94/249 (37%), Gaps = 16/249 (6%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
P ++ + +I + + PAS+TK+MT V + + +T A
Sbjct: 288 SPNACMMRLSDNKIILDMNSNQRIYPASMTKIMTTLVAIEHITNLEDTVTFTGGEYDRAY 347
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ + F G ++ ++ L +++ S D AIA++L +E FV MN ++ LG+
Sbjct: 348 TEGATTANFMAGDVVSYNDVLYGIMLPSGADACYAIADALGGSEAGFVNMMNEKAQQLGM 407
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---N 204
+ THF N G+ HYTT DM L + + P+ +
Sbjct: 408 NDTHFTNCTGLTNEDHYTTCADMIKLLQAALQNETFKTVFCTHVHTTGPLGLNPDGLQLS 467
Query: 205 WAVGTFLG---------ADGMKTGFTCASGFNIVASAI-QGDQSLIAVILGALDRNT--- 251
T+LG G KTGFT +G + + A I V GA
Sbjct: 468 STAFTYLGSPLLQNGTEITGTKTGFTDEAGHCLASCAKAGDGTEYILVTAGANTEEDPNP 527
Query: 252 RNKVSASLL 260
+ L
Sbjct: 528 HLADAKYLY 536
>gi|254302479|ref|ZP_04969837.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148322671|gb|EDK87921.1| serine-type D-Ala-D-Ala carboxypeptidase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 426
Score = 97.0 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 62/250 (24%), Positives = 100/250 (40%), Gaps = 10/250 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ DT G+VI D + AS+TK+M+ V F + L+ + ISKN +
Sbjct: 172 RAVIVGDTK-GNVIFAKDADTMYPLASVTKMMSLMVTFDEINAGNISLSDSVRISKNPLK 230
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQHMNNTSKNLGL 147
Y S K G L++ +K V SAN+ AIAE + + FV MN K LGL
Sbjct: 231 YGGSGIPLKAGQIFILEDLIKASAVYSANNATYAIAEYVGNGSVFGFVAKMNRKLKELGL 290
Query: 148 SA-THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF------QIKGLEIKGKKY 200
+ G+ + + + + + +
Sbjct: 291 QNEIRYHTPAGLPTRVTKQPMDEGTARGIYKLSIEALKYKKYIEIAGIKKTKIYNEKISI 350
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N +G G G+KTGF + +NI ++ D +I V++G TR+ + S+L
Sbjct: 351 RNRNHLIGEN-GVYGIKTGFHKEAKYNIAVASKFEDTDVIIVVMGGETYKTRDGIVLSVL 409
Query: 261 SMGFYNKTDR 270
+ N T +
Sbjct: 410 DILNNNYTVK 419
>gi|269123185|ref|YP_003305762.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Streptobacillus moniliformis DSM 12112]
gi|268314511|gb|ACZ00885.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Streptobacillus moniliformis DSM 12112]
Length = 281
Score = 96.6 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 67/267 (25%), Positives = 103/267 (38%), Gaps = 17/267 (6%)
Query: 1 MRQFLVII-AMAMLSNIFPFLSIAETNKL---------PYYTLLDTNTGHVIAENYPDHP 50
M++ L+ I + +I ++ + D
Sbjct: 1 MKKILLFILSAIFSFSINLSENLENEMYAILNYDHRLYKSMYIGDDENNK-YYSYNETST 59
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
ASLTKLMTA ++F ++E K L T + +SK AS+ P + + L
Sbjct: 60 RPLASLTKLMTALIIFDDIQEGKYELNTEVVVSKEASKVPYGVVIKENRIYTIEELLHLL 119
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY-----T 165
LI S + S +FV MN +K+LGL + F HG+
Sbjct: 120 LINSSNSSAYQLALFSSFGNVDEFVDKMNKKAKSLGLRSLRFRTPHGLPPVDTNKAMDIG 179
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
ARD+ +L+ + + G K +TN V G+KTGF +G
Sbjct: 180 NARDIYLLALNALNNEKLIEISKKYSYETSDGIKIKSTNTLVQLDE-VLGLKTGFHRRAG 238
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTR 252
+NIV GD+ +I VILGA ++R
Sbjct: 239 YNIVYLIDNGDKKIIQVILGANTISSR 265
>gi|71902908|ref|YP_279711.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS6180]
gi|71802003|gb|AAX71356.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS6180]
Length = 393
Score = 96.6 bits (238), Expect = 4e-18, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 135/340 (39%), Gaps = 50/340 (14%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------------ETNKLPYYTLLDTNTGHVIAENYP 47
++ ++ I + ++ P + E N+ ++D N+ ++ ++
Sbjct: 3 KRIILTIFTFICFSVMPLVQAEDVMDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
D P +PAS++K+ T Y++F L + K + T IT + Y SN+ G
Sbjct: 63 DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122
Query: 104 LDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH- 161
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182
Query: 162 --------------GHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPN 202
+ TTARD++ L + +P+ +++
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242
Query: 203 TNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------R 252
N G DG+KTG + ++ FN + +A +G LI +++G D + R
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302
Query: 253 NKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPN 291
+ +L GF +KT KK ++ Q P
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPK 342
>gi|71910061|ref|YP_281611.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS5005]
gi|71852843|gb|AAZ50866.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS5005]
Length = 393
Score = 96.6 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 72/351 (20%), Positives = 139/351 (39%), Gaps = 49/351 (13%)
Query: 2 RQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
++ ++ I + ++ P + +++E N+ ++D N+ ++ ++
Sbjct: 3 KRIILTIFTFICFSVMPLVHAEDVMDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
D P +PAS++K+ T Y++F L + K + T IT + Y SN+ G
Sbjct: 63 DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122
Query: 104 LDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH- 161
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRVNATAKQLGMTNTHFSNASGAAAQA 182
Query: 162 --------------GHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPN 202
+ TTARD++ L + +P+ +++
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242
Query: 203 TNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV--- 255
N G DG+KTG + ++ FN + +A +G LI +++G D + +N
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYI 302
Query: 256 ---SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEI 303
+L GF + K + E + + T+K+
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSSKQQHFKATKKQS 353
>gi|323225526|gb|EGA09756.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323251306|gb|EGA35178.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
Length = 210
Score = 96.6 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/168 (20%), Positives = 62/168 (36%), Gaps = 5/168 (2%)
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNI 228
MA++ + D P ++ K G + N N + DG+KTG T +G+N+
Sbjct: 1 MALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNL 60
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQN 284
VASA +G LI+ ++G R S LL+ GF + + + N
Sbjct: 61 VASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGN 120
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++V T + + + +K ++
Sbjct: 121 TDRASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGTI 168
>gi|225867884|ref|YP_002743832.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp.
zooepidemicus]
gi|225701160|emb|CAW98052.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
subsp. zooepidemicus]
Length = 393
Score = 96.6 bits (238), Expect = 5e-18, Method: Composition-based stats.
Identities = 72/333 (21%), Positives = 128/333 (38%), Gaps = 35/333 (10%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+++E NK ++D T ++ ++ D P +PAS++K+ T Y++F L + K L
Sbjct: 33 AGYTVSEVNKPKASIVVDAKTSEILWQDNIDMPRDPASMSKMFTLYILFEELAKGKITLD 92
Query: 78 TPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEK 132
T IT ++ SN+ G + + + + +V S+N V IA
Sbjct: 93 TTITATETDQAISKIYEISNNNIVAGVAYPIRDLIIMTVVPSSNAATVMIANYLSNNDAS 152
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQH---------------GHYTTARDMAILSWRI 177
F+ +N T+K LG++ THF NA G + + TTARD A L +
Sbjct: 153 AFIDRINKTAKELGMTNTHFSNASGAIAQAFQGYYVPEKYDLTASNITTARDFATLIYYF 212
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---------LGADGMKTGFTCASGFNI 228
++P + + + + G DGMKTG + ++ FN
Sbjct: 213 LNNYPSILDFTNQTVVRTMVGTPYEEEFHSYNHSLPDGKFGIEGVDGMKTGSSPSAAFNA 272
Query: 229 VASAIQGDQSLIAVILGALDRNT------RNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
V +A +G+ LI V+LG D + R+ +L F + K
Sbjct: 273 VVTAKRGNTRLITVVLGVGDWSDQNGEFYRHPFINALTEKAFKDSKTLTKAKRSKLKRLV 332
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
++ ++ + + D
Sbjct: 333 AKPASTAAAAKRQLPQATTDQSFLEKIEQFVDD 365
>gi|227524141|ref|ZP_03954190.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC
8290]
gi|227088698|gb|EEI24010.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus hilgardii ATCC
8290]
Length = 393
Score = 96.2 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 56/267 (20%), Positives = 110/267 (41%), Gaps = 32/267 (11%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
++ TG ++ + P AS++KLMT Y+V + + + S +
Sbjct: 126 AKAAIAMNEKTGKILWSKNSNMPRAIASVSKLMTLYLVDKKVATAAYSWNSKVNTSYSGL 185
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIV----KSANDIAVAIAES-----LCKTEKKFVQHM 138
+ + + +K L S+N+ A+A+ + K FV+ M
Sbjct: 186 KSLGQSLVYGGFKFTKNSYTVKELYEAALIDSSNNAAIALGQWVAGGGTPSYNKSFVKLM 245
Query: 139 NNTSKNLGLSATHFMNAHGVV-------------QHGHYTTARDMAILSWRIKTDFPQYM 185
N +K+ L F+ A+G+ + + +A+D+A+++ + TD+P +
Sbjct: 246 NRQAKSWNLGKATFVTANGMEQNALKGYGYSTSGGNANLVSAKDVALIARHLITDYPSTL 305
Query: 186 HYFQIKGLEIKGKKYPNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-S 238
Y +IK +++ G+ N N L DG+KTGFT +G+ V + +
Sbjct: 306 TYSKIKSMKVSGQLCYNYNNLLSGRAFYQKSLDVDGLKTGFTDLAGYCFVGTGKKTGHDR 365
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFY 265
LI V+L + + SL++ +
Sbjct: 366 LITVVLHDQNE---FTETRSLMNYVYN 389
>gi|218133984|ref|ZP_03462788.1| hypothetical protein BACPEC_01874 [Bacteroides pectinophilus ATCC
43243]
gi|217991359|gb|EEC57365.1| hypothetical protein BACPEC_01874 [Bacteroides pectinophilus ATCC
43243]
Length = 401
Score = 96.2 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 56/248 (22%), Positives = 99/248 (39%), Gaps = 11/248 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
E K Y +L+D ++ +IA D PAS+TK+MT + +++ T +
Sbjct: 149 EKVKSAYISLVDIDSHEIIAGRQYDAKIYPASMTKVMTLIIAVENIRDMNDTFTMTTELI 208
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
S + F G +T ++ L LI+ S D A A+A + +E+++ MN
Sbjct: 209 DPLVRENASRAGFDPGEKVTANDLLYGLILPSGADAAQALARMIAGSEEEYAGLMNAKCA 268
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-- 201
+GL THF N G+ YTT +M ++ + + ++P
Sbjct: 269 EIGLKNTHFANTSGLYDADQYTTPVEMGMIMEYAMQNELCAKVLSTYQYTTAPSPQHPGG 328
Query: 202 ---NTNWAVGTF----LGA--DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
+ + G KTG+ SG +V+ A++GD+ + V G ++
Sbjct: 329 IALTSTMFSRMYGTEAEGVTITAGKTGYITESGNCLVSYAVKGDKHYVCVTSGGTNKWDS 388
Query: 253 NKVSASLL 260
L
Sbjct: 389 IFDDIELY 396
>gi|317500403|ref|ZP_07958627.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
8_1_57FAA]
gi|316898158|gb|EFV20205.1| serine-type D-Ala-D-Ala carboxypeptidase [Lachnospiraceae bacterium
8_1_57FAA]
Length = 298
Score = 96.2 bits (237), Expect = 6e-18, Method: Composition-based stats.
Identities = 57/229 (24%), Positives = 91/229 (39%), Gaps = 18/229 (7%)
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
PAS TK+MTAY+ K ++ + + S G ++TL + +
Sbjct: 71 KLYPASTTKVMTAYLAL---KYGNLDDVVTMSATSTNFNWDESTCGLSAGDSLTLYDLIC 127
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
L+++S ND A AIAE + +++ F + MN +K LG + THF+N HG+ HYTT D
Sbjct: 128 GLLLQSGNDCAAAIAEHISGSQEAFAELMNTEAKQLGATGTHFVNPHGLHDENHYTTTYD 187
Query: 170 MAILSWRIKTDF--------------PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADG 215
+ ++ D Y + G
Sbjct: 188 LYLMFNEALKDQAFLDIISMNSYTAKVTSADGTSYTPTWQATNYYSAGEATPPDGIHVYG 247
Query: 216 MKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDRNTRNKVSASLLSMG 263
KTG T +G ++ + I+VI+GA D+ + LL G
Sbjct: 248 GKTGTTDQAGNCVILYEKNTAGEPYISVIMGASDKPLLYEEMNELLDAG 296
>gi|50913624|ref|YP_059596.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS10394]
gi|50902698|gb|AAT86413.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS10394]
Length = 393
Score = 96.2 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 72/340 (21%), Positives = 133/340 (39%), Gaps = 50/340 (14%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK--------------LPYYTLLDTNTGHVIAENYP 47
++ ++ I + ++ P + + ++D N+ ++ ++
Sbjct: 3 KRIILTIFTFICFSMMPLVHAEDVIDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
D P +PAS++K+ T Y++F L + K + T IT + Y SN+ G
Sbjct: 63 DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122
Query: 104 LDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH- 161
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182
Query: 162 --------------GHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPN 202
+ TTARD++ L + +P+ +++
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242
Query: 203 TNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------R 252
N G DG+KTG + ++ FN + +A +G LI +++G D + R
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302
Query: 253 NKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPN 291
+ +L GF +KT KK ++ Q P
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPK 342
>gi|139473104|ref|YP_001127819.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes str.
Manfredo]
gi|134271350|emb|CAM29568.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus
pyogenes str. Manfredo]
Length = 393
Score = 96.2 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 72/340 (21%), Positives = 133/340 (39%), Gaps = 50/340 (14%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK--------------LPYYTLLDTNTGHVIAENYP 47
++ ++ I + ++ P + + ++D N+ ++ ++
Sbjct: 3 KRIILTIFTFICFSMMPLVHAEDVIDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
D P +PAS++K+ T Y++F L + K + T IT + Y SN+ G
Sbjct: 63 DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIIAGVAYP 122
Query: 104 LDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH- 161
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182
Query: 162 --------------GHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPN 202
+ TTARD++ L + +P+ +++
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242
Query: 203 TNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------R 252
N G DG+KTG + ++ FN + +A +G LI +++G D + R
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302
Query: 253 NKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPN 291
+ +L GF +KT KK ++ Q P
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPK 342
>gi|213160842|ref|ZP_03346552.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
Length = 236
Score = 96.2 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 13/162 (8%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ +S + Y L+D N+G V+AE D +PASL
Sbjct: 39 LTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 98
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKL 110
TK+MT+YV+ +K K T +T+ +A K G + + ++
Sbjct: 99 TKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRG 158
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ ++S ND VA+A+ ++ FV MN+ LGL
Sbjct: 159 INLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLEKYPL 200
>gi|94987880|ref|YP_595981.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS9429]
gi|94541388|gb|ABF31437.1| D-alanyl-D-alanine serine-type carboxypeptidase [Streptococcus
pyogenes MGAS9429]
Length = 393
Score = 96.2 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 138/340 (40%), Gaps = 50/340 (14%)
Query: 2 RQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
++ ++ I + ++ P + +++E N+ ++D N+ ++ ++
Sbjct: 3 KRIILTIFTFICFSMMPLVHAEDVMDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
D P +PAS++K+ T Y++F L + K + T IT + Y SN+ G
Sbjct: 63 DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122
Query: 104 LDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH- 161
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182
Query: 162 --------------GHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPN 202
+ TTARD++ L + +P+ +++
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYTFLRKYPEIISFTNKSVVHTMVGTPYEEEFHT 242
Query: 203 TNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------R 252
N G DG+KTG + ++ FN + +A +G LI +++G D + R
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302
Query: 253 NKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPN 291
+ +L GF +KT KK ++ Q P
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPK 342
>gi|19745419|ref|NP_606555.1| DD-carboxypeptidase [Streptococcus pyogenes MGAS8232]
gi|19747530|gb|AAL97054.1| putative DD-carboxypeptidase [Streptococcus pyogenes MGAS8232]
Length = 393
Score = 95.8 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 72/340 (21%), Positives = 133/340 (39%), Gaps = 50/340 (14%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK--------------LPYYTLLDTNTGHVIAENYP 47
++ ++ I + ++ P + + ++D N+ ++ ++
Sbjct: 3 KRIILTIFTFICFSMMPLVHAEDVIDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
D P +PAS++K+ T Y++F L + K + T IT + Y SN+ G
Sbjct: 63 DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122
Query: 104 LDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH- 161
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182
Query: 162 --------------GHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPN 202
+ TTARD++ L + +P+ +++
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242
Query: 203 TNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------R 252
N G DG+KTG + ++ FN + +A +G LI +++G D + R
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302
Query: 253 NKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPN 291
+ +L GF +KT KK ++ Q P
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPK 342
>gi|306828007|ref|ZP_07461273.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
ATCC 10782]
gi|304429788|gb|EFM32831.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus pyogenes
ATCC 10782]
Length = 393
Score = 95.8 bits (236), Expect = 7e-18, Method: Composition-based stats.
Identities = 72/340 (21%), Positives = 133/340 (39%), Gaps = 50/340 (14%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK--------------LPYYTLLDTNTGHVIAENYP 47
++ ++ I + ++ P + + ++D N+ ++ ++
Sbjct: 3 KRIILTIFTFICFSMMPLVHAEDVIDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
D P +PAS++K+ T Y++F L + K + T IT + Y SN+ G
Sbjct: 63 DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122
Query: 104 LDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH- 161
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182
Query: 162 --------------GHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPN 202
+ TTARD++ L + +P+ +++
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242
Query: 203 TNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------R 252
N G DG+KTG + ++ FN + +A +G LI +++G D + R
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302
Query: 253 NKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPN 291
+ +L GF +KT KK ++ Q P
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPK 342
>gi|145522840|ref|XP_001447264.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124414764|emb|CAK79867.1| unnamed protein product [Paramecium tetraurelia]
Length = 272
Score = 95.8 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 8/224 (3%)
Query: 51 WNPASLTKLMTAYVVFSFLKEKKA-MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS+TK+MT YVV + + T +S AS + + KG +++++
Sbjct: 47 REIASITKIMTFYVVLNMCRTMNVHTNNTYAEVSLQASLVGGTTADLLKGDVVSIEDLFY 106
Query: 110 LLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
L++ S ND A+ +AE+ K F+Q MNN ++ L ++ T + N HG+ + ++A
Sbjct: 107 GLMLPSGNDAAMTLAENFGKNPLIYFIQEMNNKARELQMTQTTYANPHGLNNKNNVSSAY 166
Query: 169 DMAILSWRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
D++ L ++ D H+ I+ E + N + G G+KTG T
Sbjct: 167 DVSKLCNQLLKDEFFRKVVNTKIHFTTIQDEEGFTRDVIWENTNKLLYQGFKGIKTGNTS 226
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+G + + +S VILG ++ R + LL
Sbjct: 227 VAGPCLASYYQTASRSFTIVILGCRNQEDRWSETMQLLQWCLSQ 270
>gi|331701010|ref|YP_004397969.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
NRRL B-30929]
gi|329128353|gb|AEB72906.1| Serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus buchneri
NRRL B-30929]
Length = 396
Score = 95.8 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 58/269 (21%), Positives = 112/269 (41%), Gaps = 33/269 (12%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
LD NT + + + ASL+KLMT Y+V + + K ++ +T S
Sbjct: 128 AKSAVALDVNTNNNVWTKNANTARPIASLSKLMTLYLVRQKISQGKGTWSSKVTTSNAGL 187
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLI----VKSANDIAVAIAES-----LCKTEKKFVQHM 138
+ ++ F ++ L ++S+N+ A+A+ + KKF+ M
Sbjct: 188 KKLGKSNVFGGFKFNHNSYTVRQLYLAGLIESSNNAAIALGQWVAGGSTPDYNKKFIGMM 247
Query: 139 NNTSKNLGLSATHFMNAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQY 184
NN +K GL + F++A G+ ++ +Y +A D+A +S D+
Sbjct: 248 NNQAKEWGLKHSSFVSASGMEQNSLAPYGYSIGASKNANYVSASDIAQISRHFVVDYNDI 307
Query: 185 MHYFQIKGLEIKGKKYPNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ- 237
+ +K +++ G+ N N L DG+KTG+T +G+ V + +
Sbjct: 308 LTDASVKSMKVDGQTLHNYNNLLPGRKYYQKSLNVDGLKTGYTDPAGYCFVGTGRKSGHD 367
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYN 266
+I V+L + + SL++ +
Sbjct: 368 RIITVVLHDENE---FTETRSLMNYVYNQ 393
>gi|294852417|ref|ZP_06793090.1| predicted protein [Brucella sp. NVSL 07-0026]
gi|294821006|gb|EFG38005.1| predicted protein [Brucella sp. NVSL 07-0026]
Length = 258
Score = 95.8 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 58/194 (29%), Positives = 89/194 (45%), Gaps = 5/194 (2%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A+ + + + K P L+D +G V+ D P PASL KLMTA
Sbjct: 15 LLGTVFAAVPAAWAAPANSSIVTKAPQALLIDDRSGTVLLSKGADKPVPPASLAKLMTAE 74
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP-----SNSTFKKGSTMTLDNALKLLIVKSAND 118
VVF L++ + L T +S+ A S + ST T+ + L+ +IV+SAND
Sbjct: 75 VVFEALEKGRTTLETAYPVSEYAWRTGGAPSGTSTMFARIKSTPTVADLLQGMIVQSAND 134
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
A+ +AE L +E+ F MN +K LGLS++ F+N+ G+ G T D+
Sbjct: 135 GAIVLAEGLAGSEQTFAGAMNQRAKELGLSSSKFVNSTGLPAAGQVVTLEDLLNSLAISM 194
Query: 179 TDFPQYMHYFQIKG 192
P +
Sbjct: 195 RRIPNIIDIMSSPP 208
>gi|326201438|ref|ZP_08191309.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
papyrosolvens DSM 2782]
gi|325988038|gb|EGD48863.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Clostridium
papyrosolvens DSM 2782]
Length = 298
Score = 95.8 bits (236), Expect = 8e-18, Method: Composition-based stats.
Identities = 60/268 (22%), Positives = 105/268 (39%), Gaps = 18/268 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-------KLPYYTLLDTNTGHVIAENYPDHPWNP 53
M +V++ MA+++ + T P L+ + + P
Sbjct: 12 MCILVVLMMMAVIAVFVYKIEPNPTVSIALDKLNSPNAILIRLKDHTTLLDKNSGVKIYP 71
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
ASLTK+MTA V + + K + + + E S + F+ G + + L +++
Sbjct: 72 ASLTKIMTAIVALENIHDLKEEIKLTNSTFRGLYEADASMAGFQPGEQVRALDLLYGVLL 131
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S + V +A + +++ FV+ MN + LG+ THF N G+ HYTT D+AIL
Sbjct: 132 PSGAECCVGLANKVAGSQQNFVKMMNEKAAKLGMKNTHFENVTGLQNENHYTTVADLAIL 191
Query: 174 SWRIKTD-----------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+ + G+ + N T G KTG+T
Sbjct: 192 LSYSLKNDTFREIFTSARYSTKPTNKHTDGITFNSTMFEKLNNKKITGGEILGGKTGYTS 251
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRN 250
A+G + + + G Q + V GA +
Sbjct: 252 AAGLCLASLSKVGTQEYVFVTAGAKGDS 279
>gi|323225525|gb|EGA09755.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323251307|gb|EGA35179.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
Length = 195
Score = 95.4 bits (235), Expect = 9e-18, Method: Composition-based stats.
Identities = 41/177 (23%), Positives = 68/177 (38%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ A +S + Y L+D N+G V+AE D +PASL
Sbjct: 15 LTTALCAAFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 74
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNALKL 110
TK+MT+YV+ +K K T +T+ +A K G + + ++
Sbjct: 75 TKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFLKPGMQVPVSQLIRG 134
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+ ++S ND VA+A+ ++ FV MN+ LGL +
Sbjct: 135 INLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNPTSRPYTAWTPTDNTVQL 191
>gi|225027655|ref|ZP_03716847.1| hypothetical protein EUBHAL_01914 [Eubacterium hallii DSM 3353]
gi|224954969|gb|EEG36178.1| hypothetical protein EUBHAL_01914 [Eubacterium hallii DSM 3353]
Length = 321
Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 64/246 (26%), Positives = 104/246 (42%), Gaps = 20/246 (8%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK-AMLTTPITISKNASEYP 90
L++ +T V+ + PAS+TK+MTA + L I +++N +
Sbjct: 76 LLINDSTNEVLESYHCFDRLYPASITKVMTALLTLEHGNMDDEITLKHDINLTENGAVI- 134
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
ST KG T+T+ +++KSAND AV +AE + +E KF+ MN +K LG + T
Sbjct: 135 ---STLTKGDTVTVGQVFHTMLIKSANDCAVILAEYVAGSESKFIDMMNAKAKELGATHT 191
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ---IKGLEIKGKKYPNTNWAV 207
HF+N +G+ + HYTTA D+ ++ K N
Sbjct: 192 HFVNPNGLHDNNHYTTAYDLYLIFKEAVKYDTFVDTVSSKDYTMTYTTPKKTQINEYMQS 251
Query: 208 GTF---------LGA--DGMKTGFT-CASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ G G KTG T A I+ + + + +V+LGA ++
Sbjct: 252 TNYYLLNEFPVPEGVVMYGGKTGTTSMAKSCLILMTKNKKGERFFSVVLGAETKDMLYSS 311
Query: 256 SASLLS 261
+ LL
Sbjct: 312 MSQLLE 317
>gi|291460023|ref|ZP_06599413.1| putative D-alanyl-D-alanine carboxypeptidase [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291417364|gb|EFE91083.1| putative D-alanyl-D-alanine carboxypeptidase [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 338
Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 13/255 (5%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+I + Y + D + G +IA+ NPAS+TK+MT V L + LT
Sbjct: 79 SAAIGDLINSQYAVVYDLDRGRIIADKNSSEVINPASMTKVMTLLVCAEHLPDLDKRLTV 138
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
I + SN + G +++ + L +I+ S D + ++ + +E FV M
Sbjct: 139 TQDIVDYVHAHDASNCGLEAGEQISVRDLLYGVILPSGADAVMLLSREIAGSEAAFVGLM 198
Query: 139 NNTSKNLGLSA-THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM----HYFQIKGL 193
N ++ LGLS+ HF NA G+ H+ T +D A + + + I
Sbjct: 199 NQKARELGLSSGAHFSNATGLYDPNHHMTVKDTAEILNAAMKNPTARTVLESFEYSIPAT 258
Query: 194 EIKGKKYPNTNWAVGTFLG-------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILG- 245
+N + G KTG+ S F V+S + V+ G
Sbjct: 259 NKHAAGIRLSNLFLKRIKGQDTGRVSVTAAKTGYVRQSMFCAVSSGVSESGKHYLVVSGF 318
Query: 246 ALDRNTRNKVSASLL 260
A A+L
Sbjct: 319 ASSTWQCIADQAALY 333
>gi|118348894|ref|XP_001007920.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila]
gi|89289687|gb|EAR87675.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila SB210]
Length = 328
Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 68/297 (22%), Positives = 116/297 (39%), Gaps = 52/297 (17%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + + VI + ASLTK+MT VV F K+ + +
Sbjct: 9 NPPSEITCKSWCIYSLKELQVICGANQNMQLQIASLTKMMTYIVVLRFCKKHQIDIDNLQ 68
Query: 81 TI-SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ--- 136
+ S+NAS ++S K G +++ + L L++ S ND A+ +AE++ K +
Sbjct: 69 FVVSRNASAILGTSSGLKVGDQISIRDLLFCLMLPSGNDAALCLAENIGSLLYKMQKGLV 128
Query: 137 -------------------------------HMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
MNN ++ LGL+ T F N HG+ + +
Sbjct: 129 KSAYVIRNLNILNIQNESTAIQSCSVMSFVNEMNNMAQELGLNETKFSNPHGLHDKVNVS 188
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEI----------KGKKYPNTNWAVGTFLGADG 215
+A+DMAIL+ I + + Q K + + NTN + G G
Sbjct: 189 SAKDMAILTREIMKEDKFTLQLCQAKSYQFEVKNQIDNTCRQINLVNTNKLLEK-PGYFG 247
Query: 216 MKTGFTCASGFNIVASAIQGDQ------SLIAVILGALDRNTRNKVSASLLSMGFYN 266
MKTG+T ++G + + Q D+ +I V+L + R + L+ F
Sbjct: 248 MKTGYTNSAGGCLASLFKQYDKIMAQTVEVIIVVLKSDSMENRFVDTQLLVEWYFRQ 304
>gi|94989756|ref|YP_597856.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS10270]
gi|94543264|gb|ABF33312.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS10270]
Length = 393
Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 138/340 (40%), Gaps = 50/340 (14%)
Query: 2 RQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
++ ++ I + ++ P + +++E N+ ++D N+ ++ ++
Sbjct: 3 KRIILTIFTFICFSMMPLVHAEDVMDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
D P +PAS++K+ T Y++F L + K + T IT + Y SN+ G
Sbjct: 63 DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122
Query: 104 LDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH- 161
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182
Query: 162 --------------GHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPN 202
+ TTARD++ L + +P+ +++
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242
Query: 203 TNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------R 252
N G DG+KTG + ++ FN + +A +G LI +++G D + R
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302
Query: 253 NKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPN 291
+ +L GF +KT KK ++ Q P
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPK 342
>gi|21909749|ref|NP_664017.1| putative DD-carboxypeptidase [Streptococcus pyogenes MGAS315]
gi|21903933|gb|AAM78820.1| putative DD-carboxypeptidase [Streptococcus pyogenes MGAS315]
Length = 393
Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 75/340 (22%), Positives = 138/340 (40%), Gaps = 50/340 (14%)
Query: 2 RQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
++ ++ I + ++ P + +++E N+ ++D N+ ++ ++
Sbjct: 3 KRIILTIFTFICFSMMPLVHAEDVMDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
D P +PAS++K+ T Y++F L + K + T IT + Y SN+ G
Sbjct: 63 DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122
Query: 104 LDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH- 161
+ + + L V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 123 IRDLITLTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182
Query: 162 --------------GHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPN 202
+ TTARD++ L + +P+ +++
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242
Query: 203 TNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------R 252
N G DG+KTG + ++ FN + +A +G LI +++G D + R
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302
Query: 253 NKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPN 291
+ +L GF +KT KK ++ Q P
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPK 342
>gi|209558810|ref|YP_002285282.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes NZ131]
gi|209540011|gb|ACI60587.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes NZ131]
Length = 393
Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 138/340 (40%), Gaps = 50/340 (14%)
Query: 2 RQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
++ ++ I + ++ P + +++E N+ ++D N+ ++ ++
Sbjct: 3 KRIILTIFTFICFSMMPLVHAENVMDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
D P +PAS++K+ T Y++F L + K + T IT + Y SN+ G
Sbjct: 63 DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122
Query: 104 LDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH- 161
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182
Query: 162 --------------GHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPN 202
+ TTARD++ L + +P+ +++
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242
Query: 203 TNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------R 252
N G DG+KTG + ++ FN + +A +G LI +++G D + R
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302
Query: 253 NKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPN 291
+ +L GF +KT KK ++ Q P
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPK 342
>gi|94993640|ref|YP_601738.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS10750]
gi|94547148|gb|ABF37194.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS10750]
Length = 393
Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 74/340 (21%), Positives = 138/340 (40%), Gaps = 50/340 (14%)
Query: 2 RQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
++ ++ I + ++ P + +++E N+ ++D N+ ++ ++
Sbjct: 3 KRIILTIFTFICFSMMPLVHADDVMDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
D P +PAS++K+ T Y++F L + K + T IT + Y SN+ G
Sbjct: 63 DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122
Query: 104 LDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH- 161
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQA 182
Query: 162 --------------GHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPN 202
+ TTARD++ L + +P+ +++
Sbjct: 183 FQGYYNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHT 242
Query: 203 TNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------R 252
N G DG+KTG + ++ FN + +A +G LI +++G D + R
Sbjct: 243 YNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYR 302
Query: 253 NKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPN 291
+ +L GF +KT KK ++ Q P
Sbjct: 303 HPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPK 342
>gi|118388940|ref|XP_001027563.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila]
gi|89309333|gb|EAS07321.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila SB210]
Length = 363
Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 55/301 (18%), Positives = 110/301 (36%), Gaps = 47/301 (15%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A + + + + + D TG ++ + ASLTK+ T V
Sbjct: 48 AYSSTTGQSSVIEDTPYITAKAWCIYDAKTGQYQRGHHSNEIREMASLTKMATLLVSLRL 107
Query: 69 LKEKKAMLTTPIT-ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE-- 125
++ K T +S+NA+ + S ++ + + + L++ S ND AV +AE
Sbjct: 108 VERFKLDPTQLYFSVSENAANTRGTTSRLEENEWVLVKDLFYGLMLPSGNDSAVVLAENF 167
Query: 126 ---------------------------SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
+ K F++ MN+ + L +T F N HG+
Sbjct: 168 GCLLYFDSIGQNKVFQEIHSVDVTEDIYVRDYMKLFLKEMNSICEEFNLKSTKFNNPHGL 227
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG----------LEIKGKKYPNTNWAVG 208
V +Y+T D+A L++ + ++ + N
Sbjct: 228 VNKHNYSTCNDLARLTYFCLKNEEFRKIVATKTYRAVVKYVQFDNKVIERSILWENTNKL 287
Query: 209 TFLGADGMKTGFTCASGFNIVASAI-------QGDQSLIAVILGALDRNTRNKVSASLLS 261
G G+KTG T A+G + + + + ++I ++LG++++ R + + L
Sbjct: 288 LDRGFKGVKTGITVAAGACLSSWYTQTIDDYSKEECNIIIIVLGSVNQEQRFQDTIRLAD 347
Query: 262 M 262
Sbjct: 348 W 348
>gi|195978798|ref|YP_002124042.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.3 [Streptococcus
equi subsp. zooepidemicus MGCS10565]
gi|195975503|gb|ACG63029.1| D-alanyl-D-alanine carboxypeptidase precursor DacA.3 [Streptococcus
equi subsp. zooepidemicus MGCS10565]
Length = 393
Score = 95.0 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 72/333 (21%), Positives = 129/333 (38%), Gaps = 35/333 (10%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+++E N+ ++D T ++ ++ D P +PAS++K+ T Y++F L + K L
Sbjct: 33 AGYTVSEVNRPKASIVVDAKTSEILWQDNIDMPRDPASMSKMFTLYILFEELAKGKVTLD 92
Query: 78 TPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEK 132
T IT ++ SN+ G + + + + +V S+N V IA
Sbjct: 93 TTITATETDQAISKIYEISNNNIVAGVAYPIRDLIIMTVVPSSNAATVMIANYLSNNDAS 152
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQH---------------GHYTTARDMAILSWRI 177
F+ +N T+K LG++ THF NA G + + TTARD A L +
Sbjct: 153 AFIDRINKTAKELGMTNTHFSNASGAIAQAFQGYYLPEKYDLTASNITTARDFATLIYYF 212
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---------LGADGMKTGFTCASGFNI 228
T++P + + + + G DGMKTG + ++ FN
Sbjct: 213 LTNYPSILDFTNQTVVRTMVGTPYEEEFHSYNHSLPDGKFGIEGVDGMKTGSSPSAAFNA 272
Query: 229 VASAIQGDQSLIAVILGALDRNT------RNKVSASLLSMGFYNKTDRKKINYIIKDFYQ 282
V +A +G+ LI V+LG D + R+ +L F + K
Sbjct: 273 VVTAKRGNTRLITVVLGVGDWSDQNGEFYRHPFINALTEKAFKDSKTLTKAKRSKLKRLV 332
Query: 283 QNLSNEVPNISEEVCTTQKEIINYNTQMKEAKD 315
++ ++ + + D
Sbjct: 333 AKPASTAAAAKRQLPQATTDQSFLEKIEQFVDD 365
>gi|22090613|dbj|BAC06851.1| D-Ala-D-Ala carboxypeptidase homologue [Bacillus circulans]
Length = 272
Score = 95.0 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 51/163 (31%), Gaps = 14/163 (8%)
Query: 185 MHYFQIKGLEIKGK---KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + N N+ + G DG+KTG T + + +A + LI+
Sbjct: 66 RESDKTPMINYNWMLEGNSSNVNFKKYAYQGLDGLKTGHTDEALYCFTGTAERNGMRLIS 125
Query: 242 VILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI-------IKDFYQQNLSNEVPNISE 294
V++GA R + +L GF N + + +
Sbjct: 126 VVMGAKTEPERFNQTRKVLDYGFTNFEFKTLAKAGTALDAQKTVPITKGVELEAPAVLKN 185
Query: 295 EVCTTQKEIINYNTQMKEAKDKES---HFIDFEKITLLKNKIT 334
+V K+ +T+++ D + +K L
Sbjct: 186 DVAFAVKKG-TADTKLETKVDLLAADKLVAPLKKGDKLGTATL 227
>gi|218458342|ref|ZP_03498433.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli Kim 5]
Length = 219
Score = 95.0 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 2/166 (1%)
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+N +G+ G YTTARD+A+L+ ++ DFPQY YF ++G + PN N +G F G
Sbjct: 1 VNPNGLPGKGQYTTARDLAVLTVALRRDFPQYASYFSLEGFTTGQQNVPNLNMLIGRFAG 60
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
ADGMKTGF CASGFN + SA + ++L++V+LG R +A+LL GF +
Sbjct: 61 ADGMKTGFICASGFNQIGSATRNGRTLVSVVLGTDSLAARADATANLLQKGFTTQFPGND 120
Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
+K + Q +V +I+ ++C+ + I T+ + + K S
Sbjct: 121 TLGSLKPYGQGQD--QVTDITADICSAKGAKIRSETRDEVGRMKVS 164
>gi|255025482|ref|ZP_05297468.1| hypothetical protein LmonocytFSL_02553 [Listeria monocytogenes FSL
J2-003]
Length = 202
Score = 95.0 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 17/198 (8%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ ++ ++S + A ++ +TG ++ D AS+TK+M Y++
Sbjct: 5 LAVSGFLVSPKAAQAAEAPNVNANAAIAIEESTGKILYSKDADKLMGIASMTKMMDEYLL 64
Query: 66 FSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + K +TIS+ A + SN + G T+ + + + SAN A+
Sbjct: 65 LEAIDKGKLKWDDKVTISEYAYKVSQDTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAI 124
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTAR 168
AI+E + +EK+FV MN + L L F+NA G+ + + TAR
Sbjct: 125 AISEKIAGSEKEFVDAMNKKADELNLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTAR 184
Query: 169 DMAILSWRIKTDFPQYMH 186
MA L+ + D+P +
Sbjct: 185 GMAKLAKHLINDYPDVLK 202
>gi|225871201|ref|YP_002747148.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus equi subsp. equi
4047]
gi|225700605|emb|CAW95136.1| putative D-alanyl-D-alanine carboxypeptidase [Streptococcus equi
subsp. equi 4047]
Length = 393
Score = 95.0 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 35/297 (11%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+++E N+ ++D T ++ ++ D P +PAS++K+ T Y++F L + K L
Sbjct: 33 AGYTVSEVNRPKASIVVDAKTSEILWQDNIDMPRDPASMSKMFTLYILFEELAKGKVTLD 92
Query: 78 TPITISKNASEYPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEK 132
T IT ++ SN+ G + + + + +V S+N V IA
Sbjct: 93 TTITATETDQAISKIYEISNNNIVAGVAYPIRDLIIMTVVPSSNAATVMIANYLSNNDAS 152
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQH---------------GHYTTARDMAILSWRI 177
F+ +N T+K LG++ THF NA G + + TTARD A L +
Sbjct: 153 AFIDRINKTAKELGMTNTHFSNASGAIAQAFQGYYLPEKYDLTASNITTARDFATLIYYF 212
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF---------LGADGMKTGFTCASGFNI 228
T++P + + + + G DGMKTG + ++ FN
Sbjct: 213 LTNYPSILDFTNQTVVRTMVGTPYEEEFHSYNHSLPDGKFGIEGVDGMKTGSSPSAAFNA 272
Query: 229 VASAIQGDQSLIAVILGALDRNT------RNKVSASLLSMGFYNKTDRKKINYIIKD 279
V +A +G+ LI V+LG D + R+ +L F + K
Sbjct: 273 VVTAKRGNTRLITVVLGVGDWSDQNGEFYRHPFINALTEKAFKDSKTLTKAKRSKLK 329
>gi|300173926|ref|YP_003773092.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc gasicomitatum LMG
18811]
gi|299888305|emb|CBL92273.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc gasicomitatum LMG
18811]
Length = 420
Score = 95.0 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 63/382 (16%), Positives = 122/382 (31%), Gaps = 55/382 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52
MR +I A+ + + A P ++D +TG ++A D
Sbjct: 1 MRHIKIIGAIVAMLFLMTTAVSANAIAKPLEIKQDVSSAIVIDASTGQILAVKNADKLGP 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISK-----NASEYPPSNSTFKKGSTMTLDNA 107
AS +KL+TAY V + K + +TISK + S+ K G +T+
Sbjct: 61 IASQSKLLTAYAVLKAINSGKIKWSDKVTISKKADLSKQDSHLFSHLAVKAGDRLTVREL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------- 158
+I SAND A A+AE + + + +K L L+ + + N+ G
Sbjct: 121 YNTMITLSANDAAFALAEYMTPKNMTTAKALQLWAKELKLTQSTWYNSAGQINQDAFENK 180
Query: 159 -----VQHGHYTTARDMAILSW----------------RIKTDFPQYMHYFQIKGLEIKG 197
+ + + +AI++ + + +
Sbjct: 181 VKNAPDNAVNLASPKHVAIIAREIVQLDPNIRELATNTHVSYHLRNNYIVNEPTEMTKNW 240
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALD---RNTRN 253
N N +G+KTG T SG I V+ GA R
Sbjct: 241 PYLINPNHLT-----IEGLKTGSTPESGAAFTGIIKDSSGHEFITVVNGAASYMDEVQRY 295
Query: 254 KVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
+ + ++++ + + + ++ + + V Q I N +
Sbjct: 296 QKTLNIVNEVLEAQKATTFKKGHVLPYAKEVNLSRMKLYHMPVVVAQTRTIWINKSSDLS 355
Query: 314 KDKESHFIDFE---KITLLKNK 332
+ + + K + +
Sbjct: 356 PKMTALDVKGKLVQKGQKIGDI 377
>gi|317471249|ref|ZP_07930614.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
gi|316901296|gb|EFV23245.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
Length = 198
Score = 95.0 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/201 (21%), Positives = 84/201 (41%), Gaps = 13/201 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET----NKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
M++ +I L F ++ L+D +G V+ + AS
Sbjct: 1 MKKIFCVIWSLFLCLQLGFHTVRADDTLKLYAKSAILMDAGSGRVLFDKSGKSKMPNAST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TK++T + L T+SKNA+ P + + G + + L L+++S
Sbjct: 61 TKILTCLYIIKHC-----NLEEEATVSKNAAAQPQVHLGARAGEKYKVKDLLYGLMLESY 115
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV----QHGHYTTARDMAI 172
ND AV +AE + + F + +N +++ G +THF+ +G+ H TTA D+A+
Sbjct: 116 NDCAVILAEHAAGSTENFAKKLNAEARSYGAKSTHFVTPNGLDRTDKNGIHSTTAYDLAL 175
Query: 173 LSWRIKTDFPQYMHYFQIKGL 193
+ + + + + K
Sbjct: 176 IMKQCIKNKEFLVDHQSQKPF 196
>gi|25010217|ref|NP_734612.1| hypothetical protein gbs0142 [Streptococcus agalactiae NEM316]
gi|77414952|ref|ZP_00791047.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae 515]
gi|23094569|emb|CAD45787.1| Unknown [Streptococcus agalactiae NEM316]
gi|77158996|gb|EAO70212.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus agalactiae 515]
Length = 395
Score = 94.7 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 74/333 (22%), Positives = 133/333 (39%), Gaps = 54/333 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------------------NKLPYYTLLDTNTGHVI 42
M + +V +LS AE NK ++D N GH++
Sbjct: 1 MPKLIVSFLCILLSLTCVNSVQAEEHKDIMQITREAGYDVKDINKPKASIVID-NKGHIL 59
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKK 98
E+ D +PAS++K+ T Y++F L + K L T +T ++ SN+
Sbjct: 60 WEDNADLERDPASMSKMFTLYLLFEDLAKGKTSLNTTVTATETDQAISKIYEISNNNIHA 119
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
G + + + V S+N + IA F++ +N T+K L ++ THF N G
Sbjct: 120 GVAYPIRELITMTAVPSSNVATIMIANHLSQNNPDAFIKRINETAKKLDMTKTHFYNPSG 179
Query: 158 ---------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ TTARD++IL++ +P ++Y + ++
Sbjct: 180 AVASAFNGLYSPKEYDNNATNVTTARDLSILTYHFLKKYPDILNYTKYPEVKAMVGTPYE 239
Query: 203 TNWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-- 251
+ + G DG+KTG + ++ FN + +A + + LI VILG D +
Sbjct: 240 ETFTTYNYSTPGAKFGLEGVDGLKTGSSPSAAFNALVTAKRQNTRLITVILGVGDWSDQD 299
Query: 252 ----RNKVSASLLSMGFYNKTDRKKINYIIKDF 280
R+ +L+ GF + + ++K
Sbjct: 300 GEYYRHPFVNALVEKGFKDAKNISSKTPVLKAV 332
>gi|197301728|ref|ZP_03166798.1| hypothetical protein RUMLAC_00454 [Ruminococcus lactaris ATCC
29176]
gi|197299168|gb|EDY33698.1| hypothetical protein RUMLAC_00454 [Ruminococcus lactaris ATCC
29176]
Length = 339
Score = 94.7 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 67/269 (24%), Positives = 105/269 (39%), Gaps = 20/269 (7%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ ++ + + + L + N V PAS TKLMTAY+
Sbjct: 69 LCVSAENVALDGFTDEPSLHA--AGLFNLNERSVEYGYRLYDKLYPASTTKLMTAYLAL- 125
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
K K +T S G + L + L L++KS ND VAIAE +
Sbjct: 126 --KYGKLEDMVTVTDSVTGFAIDEVVCGLYPGGQVKLYDLLCGLLLKSGNDCGVAIAEYI 183
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD--FPQYM 185
+ + F + MN +K LG + THF+N HG+ + HYTTA D+ ++ + F + +
Sbjct: 184 SGSVEAFAELMNEEAKELGATGTHFVNPHGLHEDDHYTTAYDLYLIFNACIQNDTFKEII 243
Query: 186 HYFQIKG-------LEIKGKKYPNTNWAVGTFL-----GADGMKTGFTCASGFN-IVASA 232
+ P +++G G KTG T +G I+ S
Sbjct: 244 SMSSYTMSIGDAAGNTHSLEVLPTNYYSLGKTEAPEGIKVFGGKTGTTDQAGCCVILYSE 303
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLS 261
I+VI+GA D+ + LL
Sbjct: 304 DMEAHPYISVIMGAEDKAFLYQEMNRLLE 332
>gi|145490104|ref|XP_001431053.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398155|emb|CAK63655.1| unnamed protein product [Paramecium tetraurelia]
Length = 354
Score = 94.7 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 62/286 (21%), Positives = 105/286 (36%), Gaps = 44/286 (15%)
Query: 24 ETNKLPYYTLLDTNTGHVIA--------ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ +++ N G +A ASLTKLMT YV +++ K
Sbjct: 66 PLVTAQNFIVMNGNDGQNLAVIQLNNQESFNSKKRVQIASLTKLMTCYVAIQLIRDLKIN 125
Query: 76 LTTPITISKNAS-------EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+ + +S + + +++ + +TL + L L++ S ND A IAE+L
Sbjct: 126 IYQIMYVSYDVYILTFKAVQISGTSAFLRAYDRITLYDLLHGLMLPSGNDAANVIAENLS 185
Query: 129 KTEKK-------------FVQHMNNTSKNLGLSATHFMNAHGVV--------QHGHYTTA 167
K F+ MN + L ++ T F N HG Y+ A
Sbjct: 186 SFVKDPVSNIALQYRIQPFISLMNQYALLLDMNDTQFYNPHGKPTSIFSGLSNDQSYSCA 245
Query: 168 RDMAILSWRIKTD-------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
D+A L +I D + + ++ + NTN + F G G KTGF
Sbjct: 246 EDLATLCKQIINDPLLMDIVNKKEHQATIQRNNKLIKLTWENTNK-MLEFEGYCGFKTGF 304
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
T +G + + +I +IL L + R + L +
Sbjct: 305 TNKAGPCLATLFKKDSICIIIIILNCLSKEVRWDDTIKLSNWAQRK 350
>gi|315635519|ref|ZP_07890785.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri JV22]
gi|315480277|gb|EFU70944.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri JV22]
Length = 273
Score = 94.7 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 19/272 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ L + + + + A L + D +I + +PAS
Sbjct: 5 MKFLLSALILIFTPIMAFSYTEANVFQKIEKDLDSIIVKDLTKKQLIFSKDANQQVSPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
LTK+MTA + K + + +TI+ + + P+ FK G + L + + +++S
Sbjct: 65 LTKIMTAILAIESNK-----MDSVVTITADMKKVEPTILGFKVGEKIYLRDLVNAALIRS 119
Query: 116 ANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
AND A +IA ++KFV MN +K LG++ T F N G H +TA D+ L+
Sbjct: 120 ANDAANSIAIYLGNGDKQKFVNMMNAKAKKLGMTKTTFQNPCGFDAKNHKSTASDLLKLT 179
Query: 175 WRIKTD-----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ + Y + +N G+KTG+T +G ++
Sbjct: 180 EYAIKNSTFNEIVRKNSYSFKAINTKRTYTVYTSNKLQPKEKYMIGVKTGYTNQAGPCLI 239
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
A A +G + ++ V+L + + R + + L
Sbjct: 240 ARAKEGKKDILLVMLNSHN---RWENTKLALD 268
>gi|288554201|ref|YP_003426136.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
gi|288545361|gb|ADC49244.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudofirmus OF4]
Length = 547
Score = 94.7 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 65/260 (25%), Positives = 104/260 (40%), Gaps = 22/260 (8%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
F+S + +L++ + PAS K+MTA + L+
Sbjct: 115 FVSFSIPIGAHAGAVLESGQDRPSFTKNANAALYPASTVKVMTALLAIEK-----GNLSD 169
Query: 79 PITISK--NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ + + S + + G MTL+ L L++ S ND AVAIAE + + +FVQ
Sbjct: 170 RVVVGPGAATVPFDSSKAGVRPGDVMTLEQLLHGLMLPSGNDAAVAIAEHIGGSHWQFVQ 229
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
MN ++ LG + T FMNAHG TT D+A + + P+++
Sbjct: 230 MMNQRARELGATNTTFMNAHGYDHPSQKTTVSDLAKIGA-EASKHPEFLKLISTPTYATT 288
Query: 197 GKK---------YPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + NTN G KTG+T S N+++ A G + VI
Sbjct: 289 YRNRAGSPVHKVWRNTNQMLHNQAYRHSSIIGGKTGYTSVSRHNLISFAEAGGSTYTTVI 348
Query: 244 LGALDRNTRNKVSASLLSMG 263
L R R + ++LS
Sbjct: 349 LRGE-RTQRYYDTTNMLSRA 367
>gi|238925374|ref|YP_002938891.1| putative D-alanyl-D-alanine carboxypeptidase precursor [Eubacterium
rectale ATCC 33656]
gi|238877050|gb|ACR76757.1| predicted D-alanyl-D-alanine carboxypeptidase precursor
[Eubacterium rectale ATCC 33656]
Length = 367
Score = 94.7 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 57/265 (21%), Positives = 94/265 (35%), Gaps = 34/265 (12%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA--- 74
+I + + Y ++D G V+A PAS+TK+MT V ++
Sbjct: 86 ATAAIGDELESSYAVVIDEQDGTVVAGKNAHEKMYPASMTKVMTVLVAAEQAEKNAIAAA 145
Query: 75 ---------------MLTTPITISKNASEYPPSNSTFKK----GSTMTLDNALKLLIVKS 115
L +TI++ A++Y + G + L + I+ S
Sbjct: 146 ENENTEIDRQAVIENKLNEVVTITREATDYSYVHDCSTTGFLDGEQVPLRDVFNGTILPS 205
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL-SATHFMNAHGVVQHGHYTTARDMAILS 174
+ A +A + + FV MN + LG+ THF N G+ +Y+TA DMA++
Sbjct: 206 GGESAYQLAVYTAGSMEAFVDMMNQKAAELGIGQTTHFANPVGIYDENNYSTAYDMAVIM 265
Query: 175 WRIKTDFPQYM----HYFQIKGLEIKGKKYPNTNWAVGTFLG------ADGMKTGFTCAS 224
D H + + +N + G KTGF S
Sbjct: 266 QAAMQDDICKTVLSNHTYSTAATPQHPENLNISNLFLRRIEDRMTSGEVIGAKTGFVNQS 325
Query: 225 GFNIVASAIQG-DQSLIAVILGALD 248
G V+ ++ I V GA
Sbjct: 326 GNCAVSYEKAASGKTYICVTAGASS 350
>gi|269929251|ref|YP_003321572.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter
thermophilus DSM 20745]
gi|269788608|gb|ACZ40750.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Sphaerobacter
thermophilus DSM 20745]
Length = 338
Score = 94.7 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/253 (22%), Positives = 94/253 (37%), Gaps = 14/253 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK-EKKAML 76
+ L+ V+ E D P PAS K++TA V E+ +
Sbjct: 74 AAIPPDLPLSARAAILVQDEPELVLFERNADEPLPPASTAKIVTALTVLRHAGLEEVLTV 133
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE---SLCKTEKK 133
+ A + + L L +A ++ I E ++
Sbjct: 134 QEEDLVDPVAESHMGLQAGDTVTVHDLLVGLLLPSGNDAAKTLSRVIGERLPGDQPPVER 193
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP------QYMHY 187
F MN + LG++ +HF++ G G TARDM I + + +
Sbjct: 194 FAAAMNAVAAELGMTGSHFVDPSGDDAEGQVVTARDMVIAARALLREPVLVSIVAMQRAE 253
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+I G + + + NTN + G G+KTG T +G ++ + + IAVILG+
Sbjct: 254 VRIGGPKARVIRLENTNQLLAQ-DGVFGIKTGTTDQAGQCLLVAYRAPSGTQIAVILGSQ 312
Query: 248 DRNTRNKVSASLL 260
D R + +LL
Sbjct: 313 D---RYGDARALL 322
>gi|291524841|emb|CBK90428.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629]
Length = 301
Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 55/262 (20%), Positives = 101/262 (38%), Gaps = 27/262 (10%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ +T V+ PAS TK++TAY++ L +T+S
Sbjct: 48 FAKTAEGAGAFNIDTHQVLYSQNLFEKLYPASTTKILTAYIILKNCD-----LNATVTVS 102
Query: 84 KN--ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ + S K+G +T+ + L L+++S ND A+A+AE + ++F + MN+T
Sbjct: 103 HDAANPGHSSSVCGLKEGDVITVQDLLYGLLLESGNDAAIALAEYCSGSVEEFAKLMNST 162
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+K+ G + ++F+N G+ HYTT DM ++ +
Sbjct: 163 AKSFGATNSNFVNPSGLPDENHYTTIYDMYLIFSNAISLESFVAIISSQTHDVAYTNAQG 222
Query: 202 NTNWAVGTFLGADGMKTGFTCA-----------------SGFNIVASAIQGDQSLIAVIL 244
+ TF G TG A ++ S ++ +I+++
Sbjct: 223 S--AVSKTFKNTCGYLTGAYTAPENVTVTGGKTGTTGEAGYCLVLLSQNAKNERIISIVY 280
Query: 245 GALDRNTRNKVSASLLSMGFYN 266
A + +LS GF N
Sbjct: 281 KADGKKDLYSFMNEILS-GFAN 301
>gi|291524311|emb|CBK89898.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale DSM 17629]
gi|291527663|emb|CBK93249.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1]
Length = 367
Score = 94.3 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 57/265 (21%), Positives = 92/265 (34%), Gaps = 34/265 (12%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA--- 74
+I + + Y ++D G V+A PAS+TK+MT V ++
Sbjct: 86 ATAAIGDELESSYAVVIDEQDGTVVAGKNAHEKMYPASMTKVMTVLVAAEQAEKNAIAAA 145
Query: 75 ---------------MLTTPITISKNASEYPPSNSTFKK----GSTMTLDNALKLLIVKS 115
L +TI++ A++Y + G + L + I+ S
Sbjct: 146 ENENTEIDRQAVIENKLNEVVTITREATDYSYVHDCSTTGFLDGEQVPLRDVFNGTILPS 205
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL-SATHFMNAHGVVQHGHYTTARDMAILS 174
+ A +A + + FV MN + LG+ THF N G+ +Y+TA DMA++
Sbjct: 206 GGESAYQLAVYTAGSMEAFVDMMNQKAAELGIGQTTHFANPVGIYDENNYSTAYDMAVIM 265
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLG----ADGMKTGFTCAS 224
D ++P N G KTGF S
Sbjct: 266 QAAMQDDICKTVLSNHTYSTAATPQHPENLNISNLFLRRIEDKMTSGEVIGAKTGFVNQS 325
Query: 225 GFNIVASAIQG-DQSLIAVILGALD 248
G V+ ++ I V GA
Sbjct: 326 GNCAVSYEKAASGKTYICVTAGASS 350
>gi|157736385|ref|YP_001489068.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri
RM4018]
gi|157698239|gb|ABV66399.1| serine-type D-Ala-D-Ala carboxypeptidase [Arcobacter butzleri
RM4018]
Length = 273
Score = 94.3 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 62/272 (22%), Positives = 113/272 (41%), Gaps = 19/272 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
M+ L + + + + A L + D +I + +PAS
Sbjct: 5 MKFLLSALILIFTPIMAFSYTEANVFQKIEKDLDSIIVKDLTKKQLIFSKDANQQVSPAS 64
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
LTK+MTA + K + + +TI+ + + P+ FK G + L + + +++S
Sbjct: 65 LTKIMTAILAIESNK-----MDSIVTITADMKKVEPTILGFKVGEKIYLRDLVNAALIRS 119
Query: 116 ANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
AND A +IA ++KFV MN +K LG++ T F N G H +TA D+ L+
Sbjct: 120 ANDAANSIAIYLGNGDKQKFVNMMNAKAKKLGMTKTTFQNPCGFDAKNHKSTASDLLKLT 179
Query: 175 WRIKTD-----FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ + Y + +N G+KTG+T +G ++
Sbjct: 180 EYAIKNSTFNAIVRKNSYSFKAINTKRTYTVYTSNKLQPKEKYMIGVKTGYTNQAGPCLI 239
Query: 230 ASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
A A +G + ++ V+L + + R + + L
Sbjct: 240 ARAKEGKKDILLVMLNSHN---RWENTKLALD 268
>gi|213160841|ref|ZP_03346551.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
Length = 199
Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 56/157 (35%), Gaps = 5/157 (3%)
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSL 239
P ++ K G + N N + DG+KTG T +G+N+VASA +G L
Sbjct: 1 MPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRL 60
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEE 295
I+ ++G R S LL+ GF + + + N + ++
Sbjct: 61 ISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDRASLGVDKD 120
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
V T + + + +K ++
Sbjct: 121 VYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGTI 157
>gi|289759031|ref|ZP_06518409.1| LOW QUALITY PROTEIN: D-alanyl-D-alanine carboxypeptidase dacB2
[Mycobacterium tuberculosis T85]
gi|289714595|gb|EFD78607.1| LOW QUALITY PROTEIN: D-alanyl-D-alanine carboxypeptidase dacB2
[Mycobacterium tuberculosis T85]
Length = 240
Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 14/225 (6%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
P PAS K++ A V L + + ++ + K G + T L
Sbjct: 12 WPIRPASTIKVLLALVALDE-----LDLNSTVVADVADTQAECNCVGVKPGRSYTARQLL 66
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY--TT 166
L++ S ND A +A + + V MN + LG ++TH G+ G +T
Sbjct: 67 DGLLLVSGNDAANTLA-HMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGAST 125
Query: 167 ARDMAILSWRIKTDF---PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
A D+ ++ + + + + N + + + GA G KTG+T A
Sbjct: 126 AHDLVVIFRAAMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNA 185
Query: 224 SGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFY 265
+ V +A +G + L+ ++ T +A+L GF
Sbjct: 186 ARKTFVGAAARGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFA 230
>gi|238924099|ref|YP_002937615.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
33656]
gi|238875774|gb|ACR75481.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
33656]
Length = 301
Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 55/262 (20%), Positives = 100/262 (38%), Gaps = 27/262 (10%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ +T V+ PAS TK++TAY++ L +T+S
Sbjct: 48 FAKTAEGAGAFNIDTHQVLYSQNLFEKLYPASTTKILTAYIILKNCD-----LNATVTVS 102
Query: 84 KN--ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ + S K+G +T+ + L L+++S ND A+A+AE + ++F + MN+T
Sbjct: 103 HDAANPGHSSSVCGLKEGDVITVQDLLYGLLLESGNDAAIALAEYCSGSAEEFAKLMNST 162
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+K+ G + ++F+N G+ HYTT DM ++ +
Sbjct: 163 AKSFGATNSNFVNPSGLPDENHYTTIYDMYLIFSNAISLESFVAIISSQTHDAAYTNAQ- 221
Query: 202 NTNWAVGTFLGADGMKTGFTCA-----------------SGFNIVASAIQGDQSLIAVIL 244
TF G TG A ++ S ++ +I+++
Sbjct: 222 -GAAVSKTFKNTCGYLTGAYTAPENVTVTGGKTGTTGEAGHCLVLLSQNAKNERIISIVY 280
Query: 245 GALDRNTRNKVSASLLSMGFYN 266
A + +LS GF N
Sbjct: 281 KADGKKDLYSFMNEILS-GFAN 301
>gi|218670684|ref|ZP_03520355.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli GR56]
Length = 152
Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 57/152 (37%), Positives = 82/152 (53%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+L+ + +LD TG ++A D +PASLTK+MT Y+ F
Sbjct: 1 MAAVLTVTLAVSAPLAALAGNASLILDARTGKILAAENADTLNHPASLTKMMTLYLTFEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A A+AE+L
Sbjct: 61 LKRGKIAWDTPIKMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAETLG 120
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
+E F + M ++ LG+S T F+NA G+
Sbjct: 121 GSESGFARMMTAKARQLGMSRTVFLNASGLPN 152
>gi|291528982|emb|CBK94568.1| D-alanyl-D-alanine carboxypeptidase [Eubacterium rectale M104/1]
Length = 301
Score = 93.9 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 55/262 (20%), Positives = 99/262 (37%), Gaps = 27/262 (10%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ +T V+ PAS TK++TAY++ L +T+S
Sbjct: 48 FAKTAEGAGAFNIDTHQVLYSQNLFEKLYPASTTKILTAYIILKNCD-----LNATVTVS 102
Query: 84 KN--ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNT 141
+ + S K+G +T+ + L L+++S ND A+A+AE + ++F + MN+T
Sbjct: 103 HDAANPGHSSSVCGLKEGDVITVQDLLYGLLLESGNDAAIALAEYCSGSVEEFAKLMNST 162
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+K+ G + + F+N G+ HYTT DM ++ +
Sbjct: 163 AKSFGATNSSFVNPSGLPDENHYTTIYDMYLIFSNAISLESFVAIISSQTHDAAYTNAQ- 221
Query: 202 NTNWAVGTFLGADGMKTGFTCA-----------------SGFNIVASAIQGDQSLIAVIL 244
TF G TG A ++ S ++ +I+++
Sbjct: 222 -GAAVSKTFKNTCGYLTGAYTAPENVTVTGGKTGTTGEAGHCLVLLSQNAKNERIISIVY 280
Query: 245 GALDRNTRNKVSASLLSMGFYN 266
A + +LS GF N
Sbjct: 281 KADGKKDLYSFMNEILS-GFAN 301
>gi|309774606|ref|ZP_07669631.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
bacterium 3_1_53]
gi|308917637|gb|EFP63352.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
bacterium 3_1_53]
Length = 336
Score = 93.5 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 55/238 (23%), Positives = 99/238 (41%), Gaps = 12/238 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
Y ++D V+ E D PASLTK++TA V ++ +T K
Sbjct: 66 KLNSRYAMVIDLKDQQVLYEKNSDKKLFPASLTKVLTAIVALDNAEDLHKKITITDKDIK 125
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+E S + G +T+++ L LI+ S D A A+A L + FV+ MN+ +
Sbjct: 126 GLAEANASVAGLAVGEQVTIEDLLYALILPSGADGANALANHLNGSVPNFVKDMNSKADG 185
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL---EIKGKKYP 201
+G++ THF N G+ HYTT +DM + + ++ + K
Sbjct: 186 MGMTHTHFTNTTGLHDKQHYTTLQDMKKMMDHAWKNPAFRKVMTTLRYSLPATKQHPKGL 245
Query: 202 NTNWAVGTFLG--------ADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDRN 250
N + + G K+G+T +G+ +++ A ++ S + + A +
Sbjct: 246 KLNSTLLFYDNDLKFDGGRIIGGKSGYTPEAGYCLISVAEMKDGHSYMMISAKADKTD 303
>gi|116334395|ref|YP_795922.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
gi|116099742|gb|ABJ64891.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
Length = 307
Score = 93.5 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 54/254 (21%), Positives = 108/254 (42%), Gaps = 28/254 (11%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--- 93
+TG V+ + AS++K+MT Y+ + + K++ + I+ +
Sbjct: 51 DTGKVVWSKAGNTARPIASVSKIMTLYLTLAKVNGKQSNWNHKVKITSRGLVSMSRSAAC 110
Query: 94 --STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
FK G T+ + S+N+ A+A+ + + + KF++ MN +K L H
Sbjct: 111 GGFKFKLGHKYTVKQLYDAAFLDSSNNAAIALGQWVSGSNAKFIKKMNAQAKAWKLGKAH 170
Query: 152 FMNAHGVVQHG-------------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
F++A G+ + +A+D+A+++ + TD+P+ + Q ++ G+
Sbjct: 171 FVSASGLENSDLQYYGYRYGTANANMVSAKDVALIARHLITDYPRVLTDGQAGSKKVDGQ 230
Query: 199 KYPNTN------WAVGTFLGADGMKTGFTCASGFNIVASAIQGD-QSLIAVILGALDRNT 251
N N L DG+KTG+T +G+ V + +I V+L D
Sbjct: 231 LCYNYNNLLAGRKYYQASLNVDGLKTGYTPLAGYCFVGTGQMAGKHRIITVVLHDEDE-- 288
Query: 252 RNKVSASLLSMGFY 265
+ SL++ +
Sbjct: 289 -FTETRSLMNYAYQ 301
>gi|118594052|ref|ZP_01551399.1| probable D-alanyl-D-alanine carboxypeptidase [Methylophilales
bacterium HTCC2181]
gi|118439830|gb|EAV46457.1| probable D-alanyl-D-alanine carboxypeptidase [Methylophilales
bacterium HTCC2181]
Length = 256
Score = 93.5 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 61/251 (24%), Positives = 104/251 (41%), Gaps = 12/251 (4%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY- 89
++ +T VI + + ASLTKLMTA V+ L + ISK +
Sbjct: 2 AMVVSQHTDEVIYQKKAYTKTSIASLTKLMTAMVIIDSG----LDLKEKVVISKEDIDRL 57
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+ S G+ +T L + ++ S N A A++ S +K FV+ MN + LG+
Sbjct: 58 KWTGSRLTFGTKLTRLELLSVALMASDNRAASALSRSYPAGKKAFVRAMNIKALQLGMHN 117
Query: 150 THFMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ F + G+ + +TARD+ + + + D + G K + NTN
Sbjct: 118 SFFADPTGL-DKRNISTARDLVRMTKAAYQYPLIRDLSTNPNGNVKVGKRKKSIGFSNTN 176
Query: 205 WAVGTFLGADG-MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
V G KTGF +G +V + ++ +I V+L + + TR + + +
Sbjct: 177 SLVRKGQWDIGLSKTGFIREAGRCLVMQTVINNEPVIIVLLDSFGKYTRVADAKRIKTWM 236
Query: 264 FYNKTDRKKIN 274
K K N
Sbjct: 237 EKEKKINKVTN 247
>gi|229006378|ref|ZP_04164057.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus mycoides Rock1-4]
gi|228754877|gb|EEM04243.1| D-Ala-D-Ala carboxypeptidase DacF; Serine peptidase; MEROPS family
S11 [Bacillus mycoides Rock1-4]
Length = 201
Score = 93.5 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 58/183 (31%), Positives = 94/183 (51%), Gaps = 4/183 (2%)
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+TK+MT ++ +++ K L + S++A+ S + G MT++ LK + + S
Sbjct: 1 MTKIMTMLLIMEQVEKGKLKLEDKVRASEHAASMGGSQIFLEPGEEMTVNEMLKGIAIAS 60
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-- 173
ND +VA+AE + +E+ FV MN +K+LGL THF N G+ HY+TA DM+I+
Sbjct: 61 GNDASVAVAEHIAGSEEGFVNMMNKKAKDLGLKNTHFQNPTGLPAKDHYSTAYDMSIMAK 120
Query: 174 --SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
+ ++ K NTN V + G DG+KTGFT + + + AS
Sbjct: 121 ELMKYPLIRKYTGKYEDYLRENTEKKFWLVNTNKLVRFYPGVDGVKTGFTTEAKYCLTAS 180
Query: 232 AIQ 234
A +
Sbjct: 181 AEK 183
>gi|313631512|gb|EFR98800.1| D-alanyl-D-alanine carboxypeptidase DacA [Listeria seeligeri FSL
N1-067]
Length = 305
Score = 93.5 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 83/237 (35%), Gaps = 38/237 (16%)
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGV-------------VQHGHYTTARDMAILSWRIK 178
K+FV MN ++ L L F+NA G+ + + TAR MA L+ +
Sbjct: 7 KEFVAMMNKKAEELKLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLI 66
Query: 179 TDFPQYMHYFQIKGLEIKGKK-----YPNTNWA----VGTFLGADGMKTGFTCASGFNIV 229
D+P+ + E + N NW + G DG+KTG T +G +
Sbjct: 67 NDYPEVLKTASTTKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLT 126
Query: 230 ASAIQGDQSLIAVILGALD------RNTRNKVSASLLSMGFYNKTDRKKINYIIK----- 278
A+A+Q +I V+L A + R + +L F N ++ K
Sbjct: 127 ATAVQDGMRVITVVLHANGGGEGEHTSARFDETNKMLDYSFNNFKVKEVQKAGAKVKDPS 186
Query: 279 ----DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKN 331
D ++ V ++ K K ++ +K T +
Sbjct: 187 TIAVDKGKEETVGLVTKDEVKLVVP-KNGNEPKLTTKVTLKDKTLEAPVKKNTEVGE 242
>gi|166031844|ref|ZP_02234673.1| hypothetical protein DORFOR_01545 [Dorea formicigenerans ATCC
27755]
gi|166028297|gb|EDR47054.1| hypothetical protein DORFOR_01545 [Dorea formicigenerans ATCC
27755]
Length = 367
Score = 93.1 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 60/267 (22%), Positives = 102/267 (38%), Gaps = 25/267 (9%)
Query: 15 NIFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + + L D N PAS TK++TA V
Sbjct: 104 ASAAGNPLGFEPESVHAVGLFDVNNAETDCAYNIHKKIYPASTTKILTALVALEN----- 158
Query: 74 AMLTTPITISKN----ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
L+ +T++ K G +TL++ L L++ S ND AVAIA+ +
Sbjct: 159 GNLSDTVTVADEADSGKFAADEQTCGIKAGDQLTLEDLLNGLLLYSGNDNAVAIADHIAG 218
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI--------KTDF 181
+ +KF + MN +K L + +HF+N G+ HYTTA D+ ++ +
Sbjct: 219 STEKFAEMMNAEAKKLMATNSHFVNPSGLHDDNHYTTAYDLYLIFNECIKHDDFVKIINS 278
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTGFTCASGFNIVASA-IQ 234
Y + + K+ TN+ + G KTG T +G ++
Sbjct: 279 SSYTAHITGADGTKRDVKWEPTNYYAKGEATPPDNVTIIGGKTGTTKGAGNCLILLTKDS 338
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLS 261
I++I+GA + + S+LS
Sbjct: 339 SGNPYISIIMGAGSKPLLYQDMTSMLS 365
>gi|116334394|ref|YP_795921.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
gi|116099741|gb|ABJ64890.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus brevis ATCC 367]
Length = 392
Score = 93.1 bits (229), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/263 (19%), Positives = 105/263 (39%), Gaps = 28/263 (10%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
LD TG + + AS++KLMT Y+V + + S
Sbjct: 127 AKNAIALDYTTGKAVWSKSANTVRPIASVSKLMTLYLVLKKVDGSATKWNQVVDTSSKGL 186
Query: 88 EYPPSNSTF-----KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+S K G T+ ++ S+N+ A+A+ + + + KF++ MN +
Sbjct: 187 IAMGKSSACGGFLFKTGHKYTVKELYDAALLDSSNNAAIALGKWVAGSNAKFIKQMNAQA 246
Query: 143 KNLGLSATHFMNAHGVVQHG-------------HYTTARDMAILSWRIKTDFPQYMHYFQ 189
K+ L F++A G+ + +A+D+A+++ + D+P+ +
Sbjct: 247 KSWNLGKASFVSASGLENDDLKAFGYAYGSKNANMVSAKDVALIARHLIKDYPRILTDGA 306
Query: 190 IKGLEIKGKKYPNTNWAVGTFLG------ADGMKTGFTCASGFNIVASAIQGD-QSLIAV 242
+ + G+ N N + DG+KTG+T +G+ V + + +I V
Sbjct: 307 VGSKNVDGQLCYNYNNLLKGRKYYQSSLKVDGLKTGYTPLAGYCFVGTGQKSGKHRVITV 366
Query: 243 ILGALDRNTRNKVSASLLSMGFY 265
+L ++ + SL++ +
Sbjct: 367 VLHDINE---FTETRSLMNHAYT 386
>gi|238917380|ref|YP_002930897.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Eubacterium eligens ATCC 27750]
gi|238872740|gb|ACR72450.1| D-alanyl-D-alanine carboxypeptidase (penicillin binding protein
5/6) [Eubacterium eligens ATCC 27750]
Length = 370
Score = 92.7 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 87/242 (35%), Gaps = 11/242 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
L+ PY LLD + +IA D PAS+TK+MT VV + + T
Sbjct: 101 LTSESKVSSPYAALLDVDNHKIIAGKQADTRMYPASMTKVMTLIVVTDNIDKIPQTYTFG 160
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ S + F G T+ +++ L LI+ S D A A+A + + ++F + MN
Sbjct: 161 FEMLNRLFREEASVAGFLDGETVDVEDLLYGLILPSGADAAEALAIMVAGSNEEFAKLMN 220
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ-------YMHYFQIKG 192
LGL T F N G+ YTT +MA++ D +
Sbjct: 221 AKCNELGLKHTRFANPTGLYDEEQYTTPAEMAMIMEYAMRDELRAKVLGTYQYKTKATAQ 280
Query: 193 LEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ + G KTGF +G +V+ A+ G
Sbjct: 281 HPDGIQLTSTMYSRIYGNEAPGVIVKGGKTGFISQAGSCLVSYAVTNKGHAYVFCTGGAT 340
Query: 249 RN 250
Sbjct: 341 YK 342
>gi|332522713|ref|ZP_08398965.1| putative phage DNA packaging protein [Streptococcus porcinus str.
Jelinkova 176]
gi|332313977|gb|EGJ26962.1| putative phage DNA packaging protein [Streptococcus porcinus str.
Jelinkova 176]
Length = 396
Score = 92.7 bits (228), Expect = 6e-17, Method: Composition-based stats.
Identities = 57/317 (17%), Positives = 116/317 (36%), Gaps = 52/317 (16%)
Query: 1 MRQFLVIIAMAMLSNIF-----------------PFLSIAETNKLPYYTLLDTNTGHVIA 43
+++++ + + + + NK ++D + G ++
Sbjct: 2 LKKYVFSVFLIFTFFVSHLVQADEHNDILNITREAGYQVNPINKPKSSIVVDASNGDILW 61
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-----EYPPSNSTFKK 98
++ +PAS++K+ T Y++F L + K L T IT S +N
Sbjct: 62 QDNALTVRDPASMSKVFTLYLLFEDLAKGKLTLDTKITASDTDQAISEIYEISNNKIVAG 121
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG- 157
D + + S + ++ +N+T+K LG+ THF NA G
Sbjct: 122 VEYPIRDLITMIAVPSSNAATVMVANYLSQNDASAYLDRINSTAKRLGMLDTHFSNAGGA 181
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ T+A D+AIL + +P ++Y ++
Sbjct: 182 VAEAFNGYYNPKNYDKSAPNLTSAHDLAILVYHFLKKYPDILNYTNTSTVKTMIGTPYEE 241
Query: 204 NWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251
+ + G DG+KTG + ++ FN + +A +G +I +++G D +
Sbjct: 242 TFHSYNYSLPGDKYGIKGVDGLKTGSSPSAAFNAMVTAKRGKARVITIVMGVGDWSDQDG 301
Query: 252 ---RNKVSASLLSMGFY 265
R+ + +L GF
Sbjct: 302 EFYRHPFANALTEHGFK 318
>gi|264676435|ref|YP_003276341.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
gi|262206947|gb|ACY31045.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
Length = 165
Score = 92.7 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 71/138 (51%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ Y L+D G V+ D P ASLTKLM+AYVVF L+ KK L
Sbjct: 27 AAPVPPEIAARNYLLVDVTAGQVLGAKDVDAPVEQASLTKLMSAYVVFDALRSKKITLEQ 86
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ +S+ A + P S + +++ L +I++S ND +A+AE++ T + FV+ M
Sbjct: 87 RMPVSERAWKMPGSRMFIDPKMQVPVNDLLSGMIIQSGNDATMALAEAVGGTAENFVKMM 146
Query: 139 NNTSKNLGLSATHFMNAH 156
N+ +K LG+ T + N
Sbjct: 147 NDQAKALGMKNTSYKNPK 164
>gi|303234621|ref|ZP_07321255.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
BVS033A4]
gi|302494284|gb|EFL54056.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
BVS033A4]
Length = 289
Score = 92.7 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 58/265 (21%), Positives = 108/265 (40%), Gaps = 20/265 (7%)
Query: 1 MRQFLVIIAMAMLSN---------IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L I+ + +L + + + I PD
Sbjct: 1 MKKKLEIVGITLLVVVGLCFIFKIANANKFDKLSFNADCIYVYSIDDEKEIFSKNPDKKV 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PASLTK+MT Y +++ + + S + F T ++ L
Sbjct: 61 YPASLTKMMTVYTALGKIEDFDKKAPIDKKSYQKLVKQNASMAGFYGNEPTTFEDLLYGT 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ SA + A ++A ++ +++KFV MN +KN+GL+ T+F N+ G+ + HY++A+DMA
Sbjct: 121 MLASAGECADSLAINVSGSKEKFVDLMNENAKNMGLNNTNFKNSEGMDEDDHYSSAKDMA 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-----------ADGMKTGF 220
L + Y + K K +P T LG G K+G
Sbjct: 181 FLLKNSLKNEKFYKIFTTDKYTSTKTLDHPKGIEIESTVLGRLKEYEQDGFKIIGGKSGT 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILG 245
T +G + + + ++ I +++G
Sbjct: 241 TEKAGLCLATLSEKNNKKYIIIVMG 265
>gi|218512347|ref|ZP_03509187.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli 8C-3]
Length = 221
Score = 92.7 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 4/215 (1%)
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+K + ++ AND + +AE + +E++F Q M ++ LG+ F N+ G+ T
Sbjct: 1 MIKGVAIQGANDSCIILAEGMAGSEQQFAQSMTRRARELGMEKAVFGNSTGLPDGKSKVT 60
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
AR+M L+ ++ +P YF E N N +G LGADG+ TGF G+
Sbjct: 61 AREMVTLATTLQQSYPNLYPYFAQLDFEWNKIFQRNRNPLLGLDLGADGLATGFADGEGY 120
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+IVAS + + L + G R + + +L G R+ +
Sbjct: 121 SIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEWGLTAFESRQIFTE----HEVIGAA 176
Query: 287 NEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
+ + V K ++ + + +
Sbjct: 177 SVYGGSARTVDLVAKAPVSVYIPISNPDRLSARIV 211
>gi|268608716|ref|ZP_06142443.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens
FD-1]
Length = 482
Score = 92.7 bits (228), Expect = 7e-17, Method: Composition-based stats.
Identities = 50/248 (20%), Positives = 102/248 (41%), Gaps = 28/248 (11%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--S 94
+ G ++ + + PASLTKL+TA V T +T+ + +
Sbjct: 111 DDGELLYYDNINEHIAPASLTKLLTASVAL-----HYLSPDTVVTVGSEQNLVRSGSSLC 165
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAV------------AIAESLCKTEKKFVQHMNNTS 142
+ G + L + L +++ S ND A A + + F + MN+ +
Sbjct: 166 LIRPGHKLKLYDLLTGMLMASGNDAAYTVAVTTARAVKPDTAMTDAQAVSYFTELMNSYA 225
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK----TDFPQYMHYFQIKGLEIKGK 198
++G+ +HF G YTT D+ +L+ + ++ + +
Sbjct: 226 SSIGMRDSHFTTPEGWDDASQYTTVSDLLVLANHAFSIPEIKTITGTYQKKVYFVSGENI 285
Query: 199 KYPNTNWAVGTFL-----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
+ NTN + A G+KTG T ++G ++A+ + ++ ++V++G N R
Sbjct: 286 TWTNTNALLDPNSAYYCADAIGIKTGTTASAGNCLIAAFERNGKTYLSVVVGCGTGNDRY 345
Query: 254 KVSASLLS 261
+++ +LS
Sbjct: 346 ELTLKMLS 353
>gi|154502813|ref|ZP_02039873.1| hypothetical protein RUMGNA_00627 [Ruminococcus gnavus ATCC 29149]
gi|153796696|gb|EDN79116.1| hypothetical protein RUMGNA_00627 [Ruminococcus gnavus ATCC 29149]
Length = 313
Score = 92.3 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 48/233 (20%), Positives = 96/233 (41%), Gaps = 27/233 (11%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ + NTG ++ + W PAS+TKLMT + + +K L + +++ ++
Sbjct: 71 IITEINTGQILWQENAQKQWPPASMTKLMTILLAYEEIKAGNLELESTAEVNERYTDIAG 130
Query: 92 S----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
N+ + G++ T+ + L+IV S+ +A+ + +FV+ MN ++ LG+
Sbjct: 131 RYALSNNKMQPGASYTVAELMDLIIVPSSAAATYMLADMVESDPDRFVERMNQKAQELGM 190
Query: 148 SATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
T + N GV + TT D A+L + +P +++ + +
Sbjct: 191 VNTKYFNCVGVTNNLLQPYHPVSQPLDGDNITTPEDYAMLCTYLIKTYPDILNHTKYPQI 250
Query: 194 EIKGKKYPNTNWAVGTF---------LGADGMKTGFTCASGFNIVASAIQGDQ 237
+K ++ G DG+KTG + +GF + G
Sbjct: 251 TVKEGTPYEEHFTSYQISLEGAKYGLEGTDGLKTGSSDTAGFKLFVHCKTGGH 303
>gi|166240883|ref|ZP_02240755.1| D-alanyl-D-alanine carboxypeptidase [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 146
Score = 92.3 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 2 RQFLVIIAMAML----------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
R+ V++A+ ML S + + L++ NTG V+ EN D
Sbjct: 9 RKLSVVLAVCMLQLFGMHLFVSSAAAADANAIPDLQAKSAILMEANTGQVLYENNADTLL 68
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PAS++K+MT Y++ +K+ K + +SK A+ S +G +++ + +
Sbjct: 69 PPASMSKMMTEYLIMEAIKDGKIKWEDKVPVSKQAASAIGSGQLLAEGEQLSVKDMFYAI 128
Query: 112 IVKSANDIAVAIAES 126
+ S+ND +VA+AE
Sbjct: 129 SIYSSNDASVAMAEY 143
>gi|319947348|ref|ZP_08021581.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
ATCC 700641]
gi|319746590|gb|EFV98850.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus australis
ATCC 700641]
Length = 429
Score = 92.3 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 69/343 (20%), Positives = 142/343 (41%), Gaps = 40/343 (11%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
M S+ E + ++D +TG ++ + D P + S+ KLM+ YV+ ++
Sbjct: 33 IMSITEKSGTSVDEFFRPKADIVVDAHTGAIVYGDNIDAPRDSGSMAKLMSVYVLLKAIQ 92
Query: 71 EKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
E + T IT ++ SNS G+ + L ++ V S++ + IA
Sbjct: 93 EGQLDYDTQITATETDVAISQNQKLSNSPIVAGAKYKVSTLLNMIFVPSSSAATIMIANK 152
Query: 127 LC-KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV---------------QHGHYTTARDM 170
+ KF+ MN ++ +G++ T + N +G + TTARDM
Sbjct: 153 VSGGDPDKFLDLMNQRAQEIGMTNTKWNNPNGAPTAVLDGYYNPTRYDQHAINQTTARDM 212
Query: 171 AILSWRIKTDFPQYMHYFQIKGL-----EIKGKKYPNTNWA----VGTFLGADGMKTGFT 221
AIL++ + +FP+ ++Y + + + + N N++ + GADG+KTG +
Sbjct: 213 AILAYHMVNEFPEILNYTKNAKITLFEGTDYEETHENYNYSLEGGRYSLKGADGLKTGSS 272
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNT------RNKVSASLLSMGFYNKTDRKKINY 275
+ +N + +G+Q + VI+G + R+ + +L+ + + ++ +
Sbjct: 273 PTADYNYTLTVNRGNQRFVQVIMGVGHYDVEIAESLRHVIGNALIERLYQDYEYKEVLPA 332
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
Q + P T K N ++ + + +
Sbjct: 333 GDHTIQGQTYHLDKP-----FYATVKRGTNPEISVQNGQLQIA 370
>gi|90413839|ref|ZP_01221826.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium
profundum 3TCK]
gi|90325150|gb|EAS41653.1| Hypothetical D-alanyl-D-alanine endopeptidase [Photobacterium
profundum 3TCK]
Length = 298
Score = 92.3 bits (227), Expect = 9e-17, Method: Composition-based stats.
Identities = 49/274 (17%), Positives = 95/274 (34%), Gaps = 17/274 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE-------TNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R L I ++ +S + + D +G + + + A
Sbjct: 3 RALLFIFSLVSVSIATSAHATTAKLDPNNIQTASVSTYVTDLKSGKTLYKKNQNVVMPLA 62
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
S+TKLMTA V K L IT + + + S ++ + + ++
Sbjct: 63 SITKLMTAMVTLDA----KLPLDEKITFKPIDKKRMYNGYTRIRMESRLSRGETIHIALM 118
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
S N A A+A + F++ MN +K LG++ T F+++ G+ T + +
Sbjct: 119 SSENLAAAALAGNYPGGYDAFIKAMNAKAKALGMTNTRFVDSSGLNPKNVSTASDINKMA 178
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVGTFLG-ADGMKTGFTCASGFNI 228
K + + + K Y NTN + KTG+ +G +
Sbjct: 179 KAAYKYAKIRKYSTTPVHTVYFTKPKYKLGYTNTNVLARGKKWDVEMTKTGYLDIAGHCL 238
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+ ++ V+L A + T + +
Sbjct: 239 TMITKIDGKEILMVMLDAQGKLTPIGDAGRIKKW 272
>gi|257438479|ref|ZP_05614234.1| penicillin-binding protein 5 domain protein [Faecalibacterium
prausnitzii A2-165]
gi|257199058|gb|EEU97342.1| penicillin-binding protein 5 domain protein [Faecalibacterium
prausnitzii A2-165]
Length = 446
Score = 92.0 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/373 (11%), Positives = 110/373 (29%), Gaps = 38/373 (10%)
Query: 1 MRQFL-VIIAMAMLSNIFPFLSIA-------ETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ +++++A+L + + A K +++T+T ++ E + +
Sbjct: 1 MKRIFALLLSLAVLFSCLAVTAGAMFDPSTVYDVKAQSAYIVNTDTNIIVYEKDSEKQVS 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
LTK MT +V + ++ T + + + + ++
Sbjct: 61 AGGLTKYMTIALVLTNYADQLDSTFTMPFAISDYVHNSDNADMRSGETFTYREALYAMVT 120
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ E +V MN S+ +G + + + +A G+ T I
Sbjct: 121 RNANEAAMGLAHELSGGDLAGWVSQMNTLSQRIGTTNSTWTDACGLDSGNTTTAVDMYLI 180
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYP-----------NTNWAVGTFLGADGMKTGFT 221
L + + D + + + K K N + A
Sbjct: 181 LRYLMSFDAFKEISAAPTFTMPAKEKHAKSFVLLSQNVALNKTSGGRFYRSAMQGGMCDV 240
Query: 222 CAS-----GFNIVASAIQGDQSLIAVILGALDRNTRN---------KVSASLLSMGFYNK 267
A + V+ A + + I I+ + D + L+ F +
Sbjct: 241 MAYKNDSGDQSYVSWANKDGATYIFCIMQSPDTCDDYGYSNRRPALYETTKLIDWVFESF 300
Query: 268 TDRKKINYIIKDFYQQNLSNEVPNI-----SEEVCTTQKEIINYNTQMKEAKDKESHFID 322
+ + ++ + + ++ + T + + K +
Sbjct: 301 SIQAALDTDQALAEIPVKYSSDTDTLQLYPADSMMTLLPSTGDGSVTQKYFHLPDYATAP 360
Query: 323 FEKITLLKNKITK 335
++ ++ K
Sbjct: 361 IQQGDVVGTVELK 373
>gi|28895131|ref|NP_801481.1| D,D-carboxypeptidase, penicillin-binding protein [Streptococcus
pyogenes SSI-1]
gi|28810376|dbj|BAC63314.1| putative D,D-carboxypeptidase, penicillin-binding protein
[Streptococcus pyogenes SSI-1]
Length = 374
Score = 92.0 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 73/310 (23%), Positives = 128/310 (41%), Gaps = 36/310 (11%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+++E N+ ++D N+ ++ ++ D P +PAS++K+ T Y++F L + K +
Sbjct: 14 AGYTVSEVNRPKSSIVVDANSSDILWQDNIDIPRDPASMSKMFTLYILFEELAKGKITMD 73
Query: 78 TPITISKNAS----EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEK 132
T IT + Y SN+ G + + + L V S+N V IA
Sbjct: 74 TTITATPTDQAIANIYEISNNNIVAGVAYPIRDLITLTAVPSSNAATVMIANYLSNNDAS 133
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQH---------------GHYTTARDMAILSWRI 177
F+ +N T+K LG++ THF NA G + TTARD++ L +
Sbjct: 134 AFIDRINATAKQLGMTNTHFSNASGAAAQAFQGYYNPTKYDLSASNITTARDLSKLLYAF 193
Query: 178 KTDFPQ-----YMHYFQIKGLEIKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNI 228
+P+ +++ N G DG+KTG + ++ FN
Sbjct: 194 LKKYPEIISFTNKSVVHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNA 253
Query: 229 VASAIQGDQSLIAVILGALDRNT------RNKVSASLLSMGFY-NKTDRKKINYIIKDFY 281
+ +A +G LI +++G D + R+ +L GF +KT KK ++
Sbjct: 254 MITAKRGKTRLITIVMGVGDWSDQNGEFYRHPFVNALTEKGFKDSKTLSKKARQKLEKLV 313
Query: 282 QQNLSNEVPN 291
Q P
Sbjct: 314 PQTKKETSPK 323
>gi|297193840|ref|ZP_06911238.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
ATCC 25486]
gi|297151973|gb|EDY65162.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
ATCC 25486]
Length = 454
Score = 92.0 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 8/229 (3%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS----TFK 97
+ + P AS+ K MTAYV+ + IT+ K A E + S K
Sbjct: 117 LGQYGAQKPAPIASVAKTMTAYVILRDHPITGKQVGPKITVDKKAEEESKAKSESTAPIK 176
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+G T L+LL++ S N+ A +A +E+ FV+ MN+ +K+LG++ + + + G
Sbjct: 177 EGQQFTEKQMLQLLMIPSGNNAARLLARWDAGSEEAFVKKMNDAAKDLGMTNSTYTDPSG 236
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
+ T + + ++ D + + + K N N G G+K
Sbjct: 237 LKATTVSTPLDQIKLGKAVMENDVFREIVNTTRIEIPGIDGKIRNNNDRALLMDGVGGIK 296
Query: 218 TGFTCASGFNIVASAI--QGD--QSLIAVILGALDRNTRNKVSASLLSM 262
TG + +G N++ SA + ++ +++GA D + +
Sbjct: 297 TGSSTPAGGNLLWSANAVVDGEVRRIVGIVMGAQDAPALWQKLEKAIDY 345
>gi|295094878|emb|CBK83969.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus sp. ART55/1]
Length = 172
Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 62/123 (50%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ + P L++ +TG V+ E D PAS+TK+MT + F ++ +
Sbjct: 48 TQAADQTEVLEVESPSCILVEASTGQVLFEKNCDEAMAPASVTKVMTLLLAFEAIEAGQM 107
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L +T+S++A+ S F+ G T+++ +K +I+ S ND AVA+AE C+ +
Sbjct: 108 TLDDIVTVSEHAASMGGSQCFFEAGEEQTVEDMIKCIIIASGNDAAVAMAEKGCRKRRSV 167
Query: 135 VQH 137
+
Sbjct: 168 CEK 170
>gi|302380445|ref|ZP_07268913.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
ACS-171-V-Col3]
gi|302311756|gb|EFK93769.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
ACS-171-V-Col3]
Length = 289
Score = 91.6 bits (225), Expect = 1e-16, Method: Composition-based stats.
Identities = 59/265 (22%), Positives = 110/265 (41%), Gaps = 20/265 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN---------KLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L I+ + +L + + N + + I PD
Sbjct: 1 MKKKLEIVGITLLVVVGLCIIFKIANENKFDKLSFNADCIYVYSIDDEKEIFSKNPDKKV 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PASLTK+MT Y +++ + + S + F T ++ L
Sbjct: 61 YPASLTKMMTVYTALGKIEDFDKKAPIDKKSYQKLVKQNASMAGFYGNEPTTFEDLLYGT 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ SA + A ++A ++ +++KFV MN +KN+GL+ T+F N+ G+ + HY++A+DMA
Sbjct: 121 MLASAGECADSLAINVSGSKEKFVDLMNENAKNMGLNNTNFKNSEGMDEDDHYSSAKDMA 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-----------ADGMKTGF 220
L + Y + K K +P T LG G K+G
Sbjct: 181 FLLKNSLKNEKFYKIFTTDKYTSTKTLDHPKGIEIESTVLGRLKEYEQDGFKIIGGKSGT 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILG 245
T +G + + + ++ I +++G
Sbjct: 241 TEKAGLCLATLSEKNNKKYIIIVMG 265
>gi|229091483|ref|ZP_04222693.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-42]
gi|228691857|gb|EEL45604.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family S11
[Bacillus cereus Rock3-42]
Length = 196
Score = 91.6 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 7/133 (5%)
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
+ G DG+KTG T +G +A + LI+V++ A R + L GF N
Sbjct: 8 QYEGVDGLKTGTTPEAGDCFTGTAERNGMRLISVVIKANSHAARFDETKKLYDYGFANFE 67
Query: 269 DRKKINYIIKD-------FYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFI 321
+K + V + V + + + +
Sbjct: 68 MKKVYGKDSVVNGHETVRVANAKDKDVVVQTKQAVSLPIPKSNKDVYKKEFKVLNKEQEA 127
Query: 322 DFEKITLLKNKIT 334
+K + I
Sbjct: 128 PIKKGVTISKMII 140
>gi|146181846|ref|XP_001023475.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila]
gi|146144034|gb|EAS03230.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila SB210]
Length = 564
Score = 91.6 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 58/305 (19%), Positives = 105/305 (34%), Gaps = 57/305 (18%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + L D ++G I + ASLTK+MT Y V F ++
Sbjct: 258 TAFPPQVTAKAWALFDGSSGKFIDGKCVHNQREVASLTKIMTCYTVIEFFEQILQKDMKR 317
Query: 80 IT--ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL---------- 127
+ +S AS+ +++ K +++ + L L++ S ND AV +AE++
Sbjct: 318 VFVRVSSRASQTNGTSARLKYNMIISIWDLLYGLMLPSGNDSAVCLAENVGSLMYLYYVK 377
Query: 128 ---------------------------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
++F+ MN + N L T++ N HG+
Sbjct: 378 QDNEILQDEFIYDEQLLHKKLELDSTPNTGMQRFLVQMNINAVNFELINTNYSNPHGLKN 437
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE-----------IKGKKYPNTNWAVGT 209
+ ++A D+A +S + K + + N
Sbjct: 438 PLNKSSAYDVAKIS-CNAMKLESFKKIVTTKIHTAQVKVKNQQGLYENVSWTWENTNKLL 496
Query: 210 FLGADGMKTGFTCASGFNIVASAIQG------DQSLIAVILGALDRNTRNKVSASLLSMG 263
G G+KTG T A+G + + ++ LI VIL A + R + +
Sbjct: 497 DKGWSGIKTGITDAAGPCLASCIKFKDPINEINRYLIIVILSAQSMDIRWSECQKIAAWA 556
Query: 264 FYNKT 268
N
Sbjct: 557 VENYD 561
>gi|298231089|ref|ZP_06964770.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str.
Canada MDR_19F]
Length = 134
Score = 91.6 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
M++ FL ++ +++L ++ T + ++ NTG ++ E P AS+TKL
Sbjct: 1 MKKIFLTLLTVSLLGGASTAVAQDFTIAAKHAIAVEANTGKILYEKDATQPVEIASITKL 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+T Y+V+ L+ L+TP+ IS + ++ +LL +
Sbjct: 61 ITVYLVYEALENGSITLSTPVDISDYPYQLTTNSEASNIPMEARNYTVEELLEATLVSSA 120
>gi|229916043|ref|YP_002884689.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Exiguobacterium sp. AT1b]
gi|229467472|gb|ACQ69244.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Exiguobacterium sp. AT1b]
Length = 337
Score = 91.6 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 58/233 (24%), Positives = 95/233 (40%), Gaps = 15/233 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK--EKKAMLTTPITISKNASEYPP 91
++ ++ + + PAS TKLMTA + + + I S +
Sbjct: 92 VNVTNQEILIDKNANDRVFPASTTKLMTALLAYEKASAANELDQPIITIQQSTLDIPWDS 151
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ G T+T+ AL +++S ND A ++AE + FVQ MN+ +K LGL+ T+
Sbjct: 152 HIAHLAIGDTLTVRQALYATLLESGNDAANSLAEYTSGSTNAFVQLMNDRAKVLGLTGTN 211
Query: 152 FMNAHGVVQHGHYTTARDMAIL-----SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-- 204
F+NAHG HYTTA DMA + ++ + + + K
Sbjct: 212 FVNAHGYSDPNHYTTANDMAKIAFAFSTYPELIEIAGTYEFKAEFKDKDGNGKRRWWYHL 271
Query: 205 ------WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+V KTG+T SG+ +V ++ I V + A T
Sbjct: 272 GSSVNERSVNYSKFVTATKTGYTDESGYTMVFIMKHNSETYILVTMQAKSGQT 324
>gi|254362625|ref|ZP_04978714.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
PHL213]
gi|261492868|ref|ZP_05989414.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496782|ref|ZP_05993157.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|153094239|gb|EDN75110.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
PHL213]
gi|261307621|gb|EEY08949.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261311409|gb|EEY12566.1| S11 family D-Ala-D-Ala carboxypeptidase [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 291
Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 51/278 (18%), Positives = 104/278 (37%), Gaps = 20/278 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI----AETNKL---------PYYTLLDTNTGHVIAENYP 47
M++F+ ++ A++ + K Y + D N +
Sbjct: 2 MKKFIPVMIAALVLSACSSQPAKRKSTPRIKATAAYIPTENSAYVVFDLNQKKFLEGKNF 61
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ AS+TKLMTA V + + + +A + S K +
Sbjct: 62 NLVRPIASVTKLMTAVVFLEENRYGASC--QTQILPSDADFLKGTTSPLPKNLNIACSEL 119
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
LK ++V+S N A A+A + + +F+ MN+ ++ +G++ T+F ++ G+ T
Sbjct: 120 LKAMLVRSDNYAAHALAHATHLNKAQFLARMNSKAREIGMTQTYFGDSSGLSSDNVSTVV 179
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFTCAS 224
+ + Q + + + G+ + N A KTG+T +
Sbjct: 180 DLAKLAGYAASKPEIQQLSNSPLVSVYAGGRYFSMKNTNSMVRSQSYQALVSKTGYTREA 239
Query: 225 GFNIVASAIQG--DQSLIAVILGALDRNTRNKVSASLL 260
G+N+ A + + V L + +R + S+L
Sbjct: 240 GYNLAFIAKGDCRGKRIGVVSLNNDNAASRTDFTESML 277
>gi|227874487|ref|ZP_03992662.1| conserved hypothetical protein [Oribacterium sinus F0268]
gi|227839676|gb|EEJ50131.1| conserved hypothetical protein [Oribacterium sinus F0268]
Length = 382
Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 67/264 (25%), Positives = 100/264 (37%), Gaps = 13/264 (4%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+A LS SI Y + D + G ++ E NPAS+TK+MT V L
Sbjct: 115 LAKLSGNGQTKSIGSEVNANYAVVFDLDQGTILGEKNSSVSMNPASMTKVMTLLVAVENL 174
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ + +T I SN F G + + + L +I+ S D +A+A+ +
Sbjct: 175 PDLEKKITITQDIVDYVKARGASNCGFVAGEQVRVKDLLYGVILPSGADAVLALAKEIAG 234
Query: 130 TEKKFVQHMNNTSKNLG-LSATHFMNAHGVVQHGHYTTARD----MAILSWRIKTDFPQY 184
+E FV MN +++LG S F NA G+ H+ +D MA
Sbjct: 235 SEAGFVALMNKKAQDLGLSSDCKFQNATGLYHSTHHMNVKDIGEIMAAAMRNSLAREVLS 294
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLG-------ADGMKTGFTCASGFNIVASAI-QGD 236
+QI G TN V G KTGF S F V+S
Sbjct: 295 TENYQIPATNKHGDGIKLTNLFVQRIKGQDTGGASVTMAKTGFVRQSMFCAVSSGKGANG 354
Query: 237 QSLIAVILGALDRNTRNKVSASLL 260
++L+ V + K A+L
Sbjct: 355 KNLLVVTGYSSSTWQCIKDHATLY 378
>gi|169825187|ref|YP_001692798.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
gi|167831992|dbj|BAG08908.1| D-alanyl-D-alanine carboxypeptidase [Finegoldia magna ATCC 29328]
Length = 289
Score = 91.2 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 20/265 (7%)
Query: 1 MRQFLVIIAMAMLSNI---FPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPW 51
M++ L I+ + +L + F F E + + I PD
Sbjct: 1 MKKKLEIVGITLLVVVGLCFIFKIANENKFDKLSFNADCIYVYSIDDEKEIFSKNPDKKV 60
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
PASLTK+MT Y +++ + + S + F T ++ L
Sbjct: 61 YPASLTKMMTVYTALGKIEDFDKKAPIDKKSYQKLVKQNASMAGFYGNEPTTFEDLLYGT 120
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
++ SA + A ++A ++ +++KFV MN +KN+GL+ T+F N+ G+ + HY++A+DMA
Sbjct: 121 MLASAGECADSLAINVSGSKEKFVDLMNENAKNMGLNNTNFKNSEGMDEDDHYSSAKDMA 180
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW-----------AVGTFLGADGMKTGF 220
L + Y + K K +P G K+G
Sbjct: 181 FLLKNSLKNQKFYKIFTTDKYTSTKTFDHPKGIEIESTVLSRLKDYEQDGFKIIGGKSGT 240
Query: 221 TCASGFNIVASAIQGDQSLIAVILG 245
T +G + + + I +++G
Sbjct: 241 TEKAGLCWATLSEKNGKKYIIIVMG 265
>gi|303232329|ref|ZP_07319024.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
PB189-T1-4]
gi|302481586|gb|EFL44651.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
PB189-T1-4]
Length = 399
Score = 90.8 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 11/241 (4%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ + + + D PASLTK+MT Y +++ A
Sbjct: 135 TPEPPGAPFQSKSIYIYNLTDNCEVKNLNADAQLPPASLTKIMTVYTALQYIRNLDAKAP 194
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+ S + F G T + L +++S + A+++A + +E FV
Sbjct: 195 IDTASFAKLDDENASTAGFVAGEQTTFRDLLYGTLLRSGAECAISLAVNTAGSEDAFVAK 254
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF--------- 188
MN ++ +GL THF N G+ + +TA ++ + + T+ +
Sbjct: 255 MNKNAQKMGLRHTHFTNTTGLDDNNLMSTAHEIGQMLRQALTNETFRKIFCTASYDSSKT 314
Query: 189 --QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
KG+ IK + G K+G T +G + + I V +GA
Sbjct: 315 DKHPKGITIKSTVLSHLTPDEQQGFTILGGKSGTTDNAGLCWATLVEKNKKHYIVVTMGA 374
Query: 247 L 247
Sbjct: 375 P 375
>gi|313898282|ref|ZP_07831819.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
gi|312956664|gb|EFR38295.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
Length = 335
Score = 90.4 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 50/178 (28%), Positives = 80/178 (44%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
T Y ++D V+ E D PASLTK++TA V ++ +T +
Sbjct: 66 TLNSRYAMVIDLQDQQVLYEKNSDERLFPASLTKVLTAIVALDNMENLHKKITITEQDIE 125
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+E S + + G +TL++ L LI+ S D A A+A L + KFV+ MN +
Sbjct: 126 GLAEANASVAGLEAGEQVTLEDLLYALILPSGADGANALANHLNGSISKFVKDMNEKANG 185
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+G+ THF N G+ HYTT +DM + + ++ K++PN
Sbjct: 186 MGMLHTHFTNTTGLQDKQHYTTLQDMKKMMDHAWKNPAFRKVMTTLRYTIPATKQHPN 243
>gi|225575670|ref|ZP_03784280.1| hypothetical protein RUMHYD_03763 [Blautia hydrogenotrophica DSM
10507]
gi|225037127|gb|EEG47373.1| hypothetical protein RUMHYD_03763 [Blautia hydrogenotrophica DSM
10507]
Length = 337
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/235 (23%), Positives = 93/235 (39%), Gaps = 11/235 (4%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
Y L+ +TG I + + PAS+TK+MTA V + L + + +T +
Sbjct: 57 DLYSHYAVLIRRSTGEKIFDLRSEEKMFPASMTKMMTALVAYEQLSDLQTKITLNPDMFD 116
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+E S + F G +T + L +++ S + + +AE + E+ FV+ MN +
Sbjct: 117 KLTEEGASMAGFSAGEEVTALDLLYGVLLPSGAECCIGLAEYIAGDEESFVELMNQKATE 176
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM-----------HYFQIKGL 193
LG++ THF N G+ HYTT DMAIL + +GL
Sbjct: 177 LGMNHTHFCNPTGLHDENHYTTVSDMAILLEALLEKEELRQIISTTSHTSTPTNLHPEGL 236
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ + G KTG+T +G + + + I V
Sbjct: 237 TYPSSMFEDMPADALASGLILGGKTGYTQEAGQCLASFGKADGEEYILVTGKTPG 291
>gi|213161813|ref|ZP_03347523.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 146
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 13/139 (9%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESL 127
+ LIV S ND VA+A+ +
Sbjct: 125 RGLIVDSGNDACVALADYI 143
>gi|213023592|ref|ZP_03338039.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 148
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 13/139 (9%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------STFKKGSTMTLDNAL 108
SLTKLMT YVV + + +T+ ++A K+G +++ +
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLS 124
Query: 109 KLLIVKSANDIAVAIAESL 127
+ LIV S ND VA+A+ +
Sbjct: 125 RGLIVDSGNDACVALADYI 143
>gi|170016615|ref|YP_001727534.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc citreum KM20]
gi|169803472|gb|ACA82090.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc citreum KM20]
Length = 425
Score = 90.4 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 59/308 (19%), Positives = 112/308 (36%), Gaps = 47/308 (15%)
Query: 1 MR--QFLVIIAMAMLSNI----FPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWN 52
M+ +F+V ++ ++S + + K ++D TG V+A
Sbjct: 1 MKWIKFVVFFSVGLISFVRIVSAAPSAKPIDLKESLTSAVVVDARTGQVLATRNATKLGM 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITIS-----KNASEYPPSNSTFKKGSTMTLDNA 107
AS +K++TAY + + K TPI I+ + +Y S+ K G +T+
Sbjct: 61 IASQSKMLTAYAALRAIHDGKLTWDTPIPITSKADLSHQPKYVYSHLDIKAGDHLTVREL 120
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----- 162
++ SAND + A++E L + + + L L + + NA G V
Sbjct: 121 YNAMLTISANDASFALSEYLTPKGMTTQAALQSWANELKLDHSKWYNAAGQVNGNAFENK 180
Query: 163 ---------HYTTARDMAILSWRIK----------------TDFPQYMHYFQIKGLEIKG 197
+ +A +A+L+ I ++ +
Sbjct: 181 IAHEPGEAANLASAEHLAMLAREIIKLDPNIRTLGESDFISYKSASANRTVKLTTDQFLF 240
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGA---LDRNTRN 253
+ + + L +G+KTG T SG Q I V+ GA D TR
Sbjct: 241 RHQHSKKVSNPNHLIIEGLKTGSTPESGAAFTGIVKDQAGHEFITVVNGAGYYTDTVTRY 300
Query: 254 KVSASLLS 261
+ + ++++
Sbjct: 301 QETINIVN 308
>gi|264676436|ref|YP_003276342.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
gi|262206948|gb|ACY31046.1| peptidase S11, D-alanyl-D-alanine [Comamonas testosteroni CNB-2]
Length = 205
Score = 90.0 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/166 (18%), Positives = 57/166 (34%), Gaps = 12/166 (7%)
Query: 179 TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG--- 235
++ Y Q N N + DG+KTG T A+G+ +VA+A +
Sbjct: 5 PEYMHYYATKQYSYPGTPASNGSNRNALLFRDPTVDGLKTGHTNAAGYCLVATAKRDLPN 64
Query: 236 --DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQQNLSNEVP 290
+ L++++LG R S LL+ G+ K + + +N V
Sbjct: 65 VGQRRLLSIVLGTASEKARANESQKLLNWGYTAFDAVKLFDSDQPVATPAVWKGAANAVK 124
Query: 291 NISEE----VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ V T++ + + + +LK K
Sbjct: 125 IGKADGAVVVTVPSGTGGKLTTEVVRQDPLIAPIAKGQSMGVLKVK 170
>gi|313890351|ref|ZP_07823983.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
pseudoporcinus SPIN 20026]
gi|313121337|gb|EFR44444.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus
pseudoporcinus SPIN 20026]
Length = 390
Score = 90.0 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 71/361 (19%), Positives = 143/361 (39%), Gaps = 55/361 (15%)
Query: 1 MRQFLVIIAMAMLSNIF-----------------PFLSIAETNKLPYYTLLDTNTGHVIA 43
+++++ + + + + NK ++D + G ++
Sbjct: 2 LKKYVFSVFLIFTFFVSHLVQADEHNDILNITREAGYQVNPINKPKSSIVVDASNGDILW 61
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKG 99
++ +PAS++K+ T Y++F L + K L T IT S SN+ G
Sbjct: 62 QDNALTVRDPASMSKVFTLYLLFEDLAKGKITLDTKITASDTDQSISKIYEISNNKIVAG 121
Query: 100 STMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHG- 157
+ + + ++ V S+N V +A F+ +NNT+K LG+ THF NA G
Sbjct: 122 VDYPIRDLITMIAVPSSNAATVMVANYLSQNNSSAFLDRINNTAKRLGMLDTHFNNAGGA 181
Query: 158 --------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYF-----QIKGLEIKGK 198
+ T+A D+AIL + +P + Y + +
Sbjct: 182 VAEAFNGYYNPKNYDKSAPNLTSAHDLAILVYHFLKKYPDIVTYTNKSIVKTMVGTPYEE 241
Query: 199 KYPNTNWAVGTF----LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT--- 251
+ + N+++ G DG+KTG + ++ FN + +A +G +I +++G D
Sbjct: 242 TFHSYNYSLPGDKYGLKGVDGLKTGSSPSAAFNAMVTAKRGKARVITIVMGVGDWTDQDG 301
Query: 252 ---RNKVSASLLSMGF---YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIIN 305
R+ + +L GF N +K+ N + S+ +++V T + +
Sbjct: 302 EFYRHPFANALTEEGFKILKNGKTQKQANLFPNNKIHTKGSSYSYKENKKVATLIDQFES 361
Query: 306 Y 306
+
Sbjct: 362 F 362
>gi|289803285|ref|ZP_06533914.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 133
Score = 90.0 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
SLTKLMT YVV + + +T+ ++A
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAW 97
>gi|322806098|emb|CBZ03665.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum H04402
065]
Length = 167
Score = 89.7 bits (220), Expect = 5e-16, Method: Composition-based stats.
Identities = 45/164 (27%), Positives = 69/164 (42%), Gaps = 28/164 (17%)
Query: 1 MRQ-----FLVIIAMAMLSNIFPFLSIA-----------------------ETNKLPYYT 32
M++ F VII + + +F A
Sbjct: 1 MKRKIYYFFSVIITITFIFGVFVTPVSAYDQQNQLKKEEKAEDKDSNKEGDSDVDAKSAL 60
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
L++ TG VI E P + PAS+TK+MT + + K LT +TIS+NA + S
Sbjct: 61 LIEPTTGKVIYEKNPHEKFAPASVTKIMTMLLSMEAVDSGKIKLTDKVTISENAKKMGGS 120
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
G T+++ LK + + S ND AVA+ E L +E+ FV+
Sbjct: 121 TMLLDVGEERTVEDLLKGIAIASGNDAAVAMGEYLAGSEEAFVK 164
>gi|23007783|ref|ZP_00049502.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
magnetotacticum MS-1]
Length = 137
Score = 89.7 bits (220), Expect = 6e-16, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ + ++ + + L+D +G V+ E D P++PAS+ KLMTA +
Sbjct: 1 MLAVLFGLVLRPSEARAQIFQTAAVHAILIDAESGSVLFEKAADEPFSPASMAKLMTAEI 60
Query: 65 VFSFLKEKKAMLTTPITISKNASEY-----PPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
VF +KE + L + T++++A S+ + S + L + L+ LIV+S ND
Sbjct: 61 VFRAIKEGRLSLDSEFTVTEDAWRRGGAGGGGSSMFAQVNSRIKLSDLLRGLIVQSGNDA 120
Query: 120 AVAIAESLCKTEKKF 134
A+ IAE++ TE+ F
Sbjct: 121 AITIAENMAGTEEAF 135
>gi|297587879|ref|ZP_06946523.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ATCC
53516]
gi|297574568|gb|EFH93288.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna ATCC
53516]
Length = 289
Score = 89.3 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 55/254 (21%), Positives = 101/254 (39%), Gaps = 12/254 (4%)
Query: 4 FLVIIAMAMLS-NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
L++I + + + + + I PD PASLTK+MT
Sbjct: 12 LLIVIGVYFIFKVANANKFDKLSFNADCIYVYSIDDEKEIFSKNPDKKVYPASLTKMMTV 71
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ +++ + S + F T ++ L ++ SA + A +
Sbjct: 72 HTALGEIEDFDKKAPIDKKSYQKLVAQNASMAGFYGNEPTTFEDLLYGTMLASAGECADS 131
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+A ++ +++KFV MN +K +GL+ THF N+ G+ + HY++A+DMA L +
Sbjct: 132 LAINVAGSKEKFVDLMNENAKKMGLNNTHFKNSEGMDEDNHYSSAKDMAFLLKNSLKNEK 191
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-----------ADGMKTGFTCASGFNIVAS 231
Y + K K +P T LG G K+G T +G
Sbjct: 192 FYKIFTTGKYTSTKTLDHPKGIEIESTVLGRLKDYDQDGFKIIGGKSGTTEKAGLCWATL 251
Query: 232 AIQGDQSLIAVILG 245
+ + + I +++G
Sbjct: 252 SEKNGKKYIIIVMG 265
>gi|213423411|ref|ZP_03356398.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 160
Score = 89.3 bits (219), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 53/146 (36%), Gaps = 5/146 (3%)
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++ K G + N N + DG+KTG T +G+N+VASA +G LI+ +
Sbjct: 3 YAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAV 62
Query: 244 LGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTT 299
+G R S LL+ GF + + + N + ++V T
Sbjct: 63 MGGRTYKGRETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDRASLGVDKDVYLT 122
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEK 325
+ + + +K
Sbjct: 123 IPRGRMKDLKASYVLNTAELHAPLQK 148
>gi|228965491|ref|ZP_04126577.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228794221|gb|EEM41739.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 166
Score = 88.9 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDLVQISNEVFRVETSPIQVTSNDKTTVRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKN 144
N A+A+AE + E F MN K
Sbjct: 124 NRSALALAEHIAGNEDNFTVLMNKKDKR 151
>gi|530914|gb|AAA68435.1| Highly similar to the E.coli dacA and dacC gene products;
putative [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 108
Score = 88.9 bits (218), Expect = 9e-16, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 2 RQFLVIIAMA-------MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPA 54
R+ + ++ + ++ F + L+D TG V+ NPA
Sbjct: 5 RRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQRNPA 64
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
SLTKLMT YVV + + +T+ ++
Sbjct: 65 SLTKLMTGYVVDRAIDSHRISPDDIVTVGRD 95
>gi|225026703|ref|ZP_03715895.1| hypothetical protein EUBHAL_00955 [Eubacterium hallii DSM 3353]
gi|224955964|gb|EEG37173.1| hypothetical protein EUBHAL_00955 [Eubacterium hallii DSM 3353]
Length = 209
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 55/105 (52%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ + P L++ TG ++ E D PAS+TK+MT ++F L +K+ L +
Sbjct: 102 NTGFQSAAPNAILMEATTGTILYEKDADKEKPPASVTKVMTLLLIFEALSKKQITLNDTV 161
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
T+S++A+ S + G T ++D +K + V SAND VA +
Sbjct: 162 TVSEHAASMGGSQVFLEPGETQSVDTMIKCIAVSSANDACVAYSH 206
>gi|313903983|ref|ZP_07837363.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium
cellulosolvens 6]
gi|313471132|gb|EFR66454.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Eubacterium
cellulosolvens 6]
Length = 344
Score = 88.9 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/245 (22%), Positives = 96/245 (39%), Gaps = 18/245 (7%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L + + + PASLTK+MTA + +T
Sbjct: 99 LLFNIDQQEAVCAEGIYERIYPASLTKIMTALLCLES---GDLERNVVMTEEDFNLGDGA 155
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S G +++L + L L++V S+ND + A+A ++ + FV MN +++LG++ TH
Sbjct: 156 QVSQLDVGDSVSLGDLLNLVLVYSSNDASKAVARTVGGSVDNFVNMMNQKAQSLGMTGTH 215
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIK--TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
F N HG+ + HYTT D+ ++ F + + P T A T
Sbjct: 216 FANPHGLHEENHYTTLYDIYLMMNYAYKLPGFSEAASKSSTEIHVSPSDGNPYTFIANST 275
Query: 210 FLGADGM------------KTGFTCASGFNIVASAIQG-DQSLIAVILGALDRNTRNKVS 256
G+ KTG T +G + IAV+ GA ++
Sbjct: 276 DEYFTGIYSLPQNVTVLASKTGTTDEAGSCLSLVVQSNYGVKYIAVVTGAQNKEDLYTDM 335
Query: 257 ASLLS 261
+++L+
Sbjct: 336 SAVLN 340
>gi|333009574|gb|EGK29026.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
flexneri K-272]
gi|333020501|gb|EGK39764.1| D-alanyl-D-alanine carboxypeptidase dacC domain protein [Shigella
flexneri K-227]
Length = 147
Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ A + A + + L+D +G V+AE D +PASLTK+MT+YVV
Sbjct: 17 FLFLFAPTAFAAEQTVEAPSVDTRAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVV 76
Query: 66 FSFLKEKKAMLTTPITISKNASEY 89
LK K LT +T+ K+A
Sbjct: 77 GQALKADKIKLTDMVTVGKDAWAT 100
>gi|255527697|ref|ZP_05394554.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
carboxidivorans P7]
gi|296185032|ref|ZP_06853442.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
carboxidivorans P7]
gi|255508610|gb|EET84993.1| Serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
carboxidivorans P7]
gi|296049866|gb|EFG89290.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium
carboxidivorans P7]
Length = 376
Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 71/318 (22%), Positives = 116/318 (36%), Gaps = 19/318 (5%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
TG +I D PAS TKL+TA ++ + A+ T + S
Sbjct: 1 MKTGEIIYAKDIDKQMYPASTTKLLTALLLAENKNKNDALKYTEKAKIQPPSALNADLHP 60
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
G TMT + + L++ S ND+A IAES+ K + F MN K L L THF+
Sbjct: 61 INVGETMTAQDVMDGLLLYSGNDMAYVIAESVGKDDVDFANKMNEKVKQLNLKNTHFVTP 120
Query: 156 HGVVQHGHYTTARDMAILSWRIKTDFPQYMHY----FQIKGLEIKGKKYPNTNWAVGTFL 211
+G+ HYTTA D++ ++ + IK N N +G
Sbjct: 121 NGLHDPNHYTTAYDLSNIASTAFQNPWVRETMGKQKNTIKTSSGTSFVIENRNKLLGKN- 179
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNKT 268
G G KTG+T +G +V + + ++ V++ + +++ + K
Sbjct: 180 GCIGGKTGYTSEAGKCLVTVYERDGRKILGVVMKSVYDATDMAVFNDMEKIINWSYAAKP 239
Query: 269 ----------DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
K I Y + N E++ IN N K
Sbjct: 240 VTLYKAGDVVTTKSIKYKPLIIGPEKTINVPICTKEDIVY-YDNYINKNELSKTVNLSNI 298
Query: 319 HFIDFEKITLLKNKITKK 336
+ + + + N K+
Sbjct: 299 NTSSIKGESSIGNLTVKE 316
>gi|293389974|ref|ZP_06634308.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1]
gi|290950508|gb|EFE00627.1| DacC protein [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 293
Score = 88.5 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 58/260 (22%), Positives = 104/260 (40%), Gaps = 11/260 (4%)
Query: 12 MLSNIFPFLSIAETNK-LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
ML N+FP L + Y + D V+ P+ AS+TKLMTA V K
Sbjct: 1 MLKNVFPLLILLPAVAIAQSYVVYDFTHNKVLESGAPNTVRPIASVTKLMTANVFLEHNK 60
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ + + +++ K + ++ LK+++V S N A A++ S T
Sbjct: 61 NPRCTASITD---DDFDYIKGTHTKLPKYTPISCRELLKMMLVHSDNYAAHALSRSAGMT 117
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+F+ MN ++ LG+ +T F ++ G+ H + + + + +K +
Sbjct: 118 RLQFIGKMNEKARQLGMKSTRFSDSSGLSNHNVSSVMDLVKLTKYSMKKTEIKAFSNISS 177
Query: 191 KGLEIKGKK--YPNTNW-AVGTFLGADGMKTGFTCASGFNIVAS--AIQGDQSLIAVI-L 244
++ + NTN A KTG+ SG+N+V +++ I VI L
Sbjct: 178 TYVKAGKRNVFVKNTNKLVRDEMFSAAINKTGYIRESGYNLVFVNKVPCNNRATIGVISL 237
Query: 245 GALDRNTRNKVSA-SLLSMG 263
R+ + L G
Sbjct: 238 NNSSSAYRSSFTKNKLEKYG 257
>gi|269123281|ref|YP_003305858.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Streptobacillus moniliformis DSM 12112]
gi|268314607|gb|ACZ00981.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Streptobacillus moniliformis DSM 12112]
Length = 375
Score = 88.1 bits (216), Expect = 1e-15, Method: Composition-based stats.
Identities = 62/311 (19%), Positives = 126/311 (40%), Gaps = 29/311 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ L++I LS + E + Y L D G + + + ASLTK+M
Sbjct: 1 MKKILILICTFSLSIYGMEIEKKERIPIIYTALTD---GTEVIDINSELISPIASLTKVM 57
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL-DNALKLLIVKSANDI 119
V + + K L+ +T K + + + G ++ LK ++ S+N+
Sbjct: 58 NVIVAKDEISKGKFSLSDKVTFDKYTAFITGGSISAWSGDNSYTLEDLLKAQMIFSSNNA 117
Query: 120 AVAIAESLC-KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY------TTARDMAI 172
A A A+ + F+ MN ++ LG+ T+F + G+ + +TA+D+ +
Sbjct: 118 AYATAKHIGLGDIDNFIILMNKKARELGMYNTYFASPAGLPPRLNKGFGMDISTAKDLYL 177
Query: 173 LSWRIKTDF----PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L+ + + Y N +G + G G+KTG+ +GFNI
Sbjct: 178 LAKYAIENTDILEYSNKKSITFPNSRDPLRMYYNRITMLGEY-GVVGLKTGYHDEAGFNI 236
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLL-------------SMGFYNKTDRKKINY 275
+ + GD ++I++ L + R + +L +Y + N
Sbjct: 237 IIISKIGDSTVISISLNSETEKQRYILQREILSKLSERLEKIIDKDKAYYLFEVKDYKNK 296
Query: 276 IIKDFYQQNLS 286
I++ + +++++
Sbjct: 297 ILEGYIKEDIN 307
>gi|228958790|ref|ZP_04120501.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228800887|gb|EEM47793.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 166
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSAAL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L +KK L + IS S T+ + L L++
Sbjct: 64 SKLMTEYIVLEQLNDKKIQLDDFVQISNEVFRVETSPIQVTSNDKTTIRDLLHALLLAGN 123
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKN 144
N A+A+AE + E F MN K
Sbjct: 124 NRSALALAEHIAGNEDNFTVLMNKKDKR 151
>gi|298247807|ref|ZP_06971612.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
gi|297550466|gb|EFH84332.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Ktedonobacter
racemifer DSM 44963]
Length = 389
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 10/249 (4%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ LLD + G V+ + + A TK M A + +
Sbjct: 141 TSTVVAKPVLHGSNAFLLDADMGTVLVDVNGHARVSVAHFTKYMVAITALENADPNQ--M 198
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
T S +A S + G + L + L L++ S ND A IA ++ + FV
Sbjct: 199 ITIDQASLDAVPKGLSTAQLVAGDQIPLHDLLNGLLLPSGNDAAGVIARAVGGDPQNFVA 258
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT-----DFPQYMHYFQIK 191
MN ++ L L+ THF + + + +YT+A D+A + + +
Sbjct: 259 MMNEEARQLQLNDTHFNSPYAISSADNYTSAADLASMMRYGMQLEVFSEDITGTIWTLQA 318
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ N N G + +G G++ + + LI V + A
Sbjct: 319 SAYNHAYVWENVNLPQVNEPGVE---SGHDKEIGYHAIFTPQSNGHLLIGVEINAPSPEA 375
Query: 252 RNKVSASLL 260
N +++L
Sbjct: 376 LNADVSTIL 384
>gi|227432858|ref|ZP_03914813.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227351385|gb|EEJ41656.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 251
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 52/249 (20%), Positives = 100/249 (40%), Gaps = 22/249 (8%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
++ +T +++E P AS++KLMT Y+V L + K E ++
Sbjct: 1 MNADTDKILSEKNAHKPLAIASISKLMTGYLVLKKLPLGT-QVQPSSNTMKIGEESNLAS 59
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ + D L+ + SAND A+A+ + + ++ KFV+ M TS++ GL++ +
Sbjct: 60 VNLVSNQSYSADELLRAALQLSANDAAIALGDQVSGSQTKFVKLMTKTSQSWGLASAQWY 119
Query: 154 NAHGV-------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
NA G+ + +A D+A+++ I P+ + G
Sbjct: 120 NAAGIRNDEAMDDDVKAPDNAENKMSAVDVALMTDNILEKTPRIKRIVHQSQNQFDGITQ 179
Query: 201 P-----NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL---DRNTR 252
N+ T G K G + SG + V + I V+L A + +
Sbjct: 180 DSNYVLMKNYFKNTKYTVTGAKLGISVKSGVSYVGLFTYKGKHYITVVLHADQYTNLSAV 239
Query: 253 NKVSASLLS 261
+ + +L+
Sbjct: 240 FRETKRILN 248
>gi|152978447|ref|YP_001344076.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus
succinogenes 130Z]
gi|150840170|gb|ABR74141.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus
succinogenes 130Z]
Length = 296
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 57/293 (19%), Positives = 108/293 (36%), Gaps = 15/293 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
MR+ ++ A ++L + + Y + D V+ P AS+TKLM
Sbjct: 1 MRKVMLKKAFSILLLLPSWAM------AQSYVVYDFTHDKVLESRSPYSVQPIASVTKLM 54
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA V + + + ++ +++ K + M + LK ++V S N A
Sbjct: 55 TANVFLENNRNRNCTASITD---EDNDYIKGTHTRLPKYTPMPCNELLKAMLVHSDNYAA 111
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+A S + +F+ MN +K LG+ +T F ++ G+ + + + + + +
Sbjct: 112 HALARSAGMSRIRFIGKMNEKAKELGMKSTRFTDSSGLSSNNVSSVMDLVKLAKYSLNKP 171
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADG---MKTGFTCASGFNIVASAIQGDQ 237
Q + + + N G KTG+ SG+N+V +
Sbjct: 172 QIQALSDTSAAYIRAGKRNVFVKNTNKLVREEIFGAALNKTGYIRESGYNLVFVNKFQCR 231
Query: 238 S-LIAVI-LGALDRNTRNKVSA-SLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
I VI L R+ + L G +R+ N Y++
Sbjct: 232 KSTIGVISLNNTSSAFRSAFTKNKLEQYGCLTLNNRELRNSGDDALYEEGYDE 284
>gi|282865542|ref|ZP_06274593.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
sp. ACTE]
gi|282559586|gb|EFB65137.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
sp. ACTE]
Length = 905
Score = 88.1 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 64/352 (18%), Positives = 125/352 (35%), Gaps = 41/352 (11%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYY----------TLL---DTNTGHV-------IAE 44
LV++ + + + + + ++ + G V I
Sbjct: 513 LVLLLLIVFAIAQAVRPLPDPTLSLSAAPTYTFGGEKLVMPWPEEGQGAVEVEGVGAIGS 572
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK----NASEYPPSNSTFKKGS 100
+ P AS+ K+MTAYV+ I + + A+ S + +KG
Sbjct: 573 YGKEKPAPIASMAKVMTAYVILQGHPITGDQKGEQIEVDEQAGKEAAITDESTAAIEKGD 632
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
T L++L++ S N++A +A TEK F++ MN +K+LG++ T + + G+
Sbjct: 633 KFTEYQMLQMLMIPSGNNVARLLARWDAGTEKAFIEKMNAAAKDLGMTNTTYTDPSGLKA 692
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
T A D L + + + + N N+ + G +G+KTG
Sbjct: 693 STMSTPA-DQITLGKAVMRNDVFREVVDMPQADIPGVGRIYNNNYILLE-DGVNGIKTGS 750
Query: 221 TCASGFNIVASAI--QGD--QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
+ +G N++ +A + +I ++GA R+ +
Sbjct: 751 STPAGGNLLWTANTVVDGKPRRIIGAVMGATVEGILEAKLER----------ARQNSLKL 800
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
IK + S V +V T + KD ++ ++ L
Sbjct: 801 IKAAQKGVDSATVVK-KGQVVGYVDNGFGARTPVVATKDLKAVGWGGLQVDL 851
>gi|65319857|ref|ZP_00392816.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A2012]
Length = 151
Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 55/138 (39%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L + A++ F + L+D N+G V+ + ++ A+L+KLMT Y
Sbjct: 11 LLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEENSIQSATLSKLMTEY 70
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+V L + L + IS S T+ + L L++ N +A+
Sbjct: 71 IVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRSTLAL 130
Query: 124 AESLCKTEKKFVQHMNNT 141
AE + E F Q MN
Sbjct: 131 AEHIAGNEDNFTQLMNQK 148
>gi|251792511|ref|YP_003007237.1| DacC protein [Aggregatibacter aphrophilus NJ8700]
gi|247533904|gb|ACS97150.1| DacC protein [Aggregatibacter aphrophilus NJ8700]
Length = 302
Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats.
Identities = 53/305 (17%), Positives = 108/305 (35%), Gaps = 28/305 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + + Y + D V+ P+ AS+TKLM
Sbjct: 12 LKKIFPFLLFMPTFVM-----------AQSYVVYDFTHNKVLESGAPNTVRPIASVTKLM 60
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA V K + + ++ +++ K + + LK ++V S N A
Sbjct: 61 TANVFLEHNKNPRCTASITN---EDYDYIKGTHTKLPKYTPIACRELLKAMLVHSDNYAA 117
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ S T ++F++ MN +K+LG+ +T F ++ G+ + + + + +
Sbjct: 118 HALSRSAGMTRQQFIKKMNEKAKHLGMRSTRFSDSSGLSNSNVSSAMDLVKLAKYSLAKP 177
Query: 181 FPQYMHYFQIKGLEIKGKKY--PNTNW-AVGTFLGADGMKTGFTCASGFNIVA--SAIQG 235
+ + ++ + NTN A KTG+ SG+N+V S
Sbjct: 178 EIKALSNLSTAYIQAGKRNIFVKNTNKLVRDEMFSAAINKTGYIRESGYNLVFVNSVPCN 237
Query: 236 DQSLIAVILGALDRNTRNKVSA-SLLSMG--------FYNKTDRKKINYIIKDFYQQNLS 286
++ + L R+ + L G F + D + + L
Sbjct: 238 RATIGVISLNNSSSAFRSNFTKSKLEKYGCTVLNGRKFKSFEDDIQYEEGYDEQGMDELI 297
Query: 287 NEVPN 291
+V
Sbjct: 298 KKVAG 302
>gi|228985666|ref|ZP_04145819.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228774061|gb|EEM22474.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 272
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 12/218 (5%)
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT Y+ L E L + IS S T+ + L L++ N
Sbjct: 1 MTEYITLEQLNEGTIQLDEVVKISNEVFRAETSPIQVTSKDRTTVRDLLHTLLLTGNNRS 60
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGL-SATHFMNAHGVVQHGHY---TTARDMAILSW 175
A+A+AE + E KF Q MN +K+L L ++ F+NA G+ + TTA ++A L+
Sbjct: 61 ALALAEHIAGNEDKFTQLMNEKAKHLKLSQSSPFLNATGMNNDTNKLSTTTAIEVAKLAT 120
Query: 176 RIKTDFPQYMHYFQIK--GLEIKGKKYPNTNWAVG------TFLGADGMKTGFTCASGFN 227
++ TDFP ++ ++ K K NTN + G DG++T F+ ++
Sbjct: 121 QLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKHQGVDGLQTSFSTNGNYS 180
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
V++A +GD LI+VIL A + N+ + LL GF
Sbjct: 181 FVSTAKRGDTRLISVILDAENENSTFIETKKLLQYGFD 218
>gi|328480234|gb|EGF49154.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus MTCC
5462]
Length = 250
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/238 (15%), Positives = 78/238 (32%), Gaps = 30/238 (12%)
Query: 1 MRQFLVIIAMAMLSNIF------------PFLSIAETNKLPYYTLLDTNTGHVIAENYPD 48
M++ L + AM++ + S ++ TG V+
Sbjct: 1 MKKLLRGLVAAMVAVLMIGGAAPAASVAAAESSDTNLVNAKAAVAIEPTTGKVLYAKNAS 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS+TK+++ +V +K K +T+ ++ ++
Sbjct: 61 TVLPIASMTKMISIELVLDAIKSGKIKWDDKVTLDQSIWTISQDRDLSNVPLRRDGSYSV 120
Query: 109 KLLIVKSANDIAVAIAE----SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV------ 158
+ L S A A ++ +++KFV M+ K+ G++ +N G+
Sbjct: 121 RELYDASLIYSANAAMMLLAKAVAGSQEKFVNQMDAKLKSWGITDAKIVNVTGLNNSQLK 180
Query: 159 --------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+ +A+DMA ++ + D P+ + I + N
Sbjct: 181 DAKVPGTGDNAENEMSAKDMAQVAQHLIKDHPEVLKTTSIAKQTFRKGTDDAINMENW 238
>gi|108806608|ref|YP_650524.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Antiqua]
gi|167399990|ref|ZP_02305508.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
[Yersinia pestis biovar Antiqua str. UG05-0454]
gi|108778521|gb|ABG12579.1| D-alanyl-D-alanine carboxypeptidase [Yersinia pestis Antiqua]
gi|167050698|gb|EDR62106.1| penicillin-binding protein 6 (D-alanyl-D-alaninecarboxypeptidase
fraction C) (DD-peptidase) (DD-carboxypeptidase) (PBP-6)
[Yersinia pestis biovar Antiqua str. UG05-0454]
Length = 183
Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
DGMKTG+T +G+N+VASA G LI+V+LGA R S LL+ GF
Sbjct: 14 VDGMKTGYTNGAGYNLVASATDGPMRLISVVLGAPSDKVRFSESEKLLTWGFRFYETVVP 73
Query: 273 INYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
I + + + S ++E+ T + N + ++ K +
Sbjct: 74 IKSTKPFVTEKVWLGDNSQVELGVAEDAAITIPKGQMKNLKASYTLNQTELRAPLAKHQV 133
Query: 329 LKNK 332
+
Sbjct: 134 VGTI 137
>gi|309776078|ref|ZP_07671069.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
bacterium 3_1_53]
gi|308916029|gb|EFP61778.1| serine-type D-Ala-D-Ala carboxypeptidase [Erysipelotrichaceae
bacterium 3_1_53]
Length = 305
Score = 87.0 bits (213), Expect = 3e-15, Method: Composition-based stats.
Identities = 50/252 (19%), Positives = 94/252 (37%), Gaps = 15/252 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
Y L+ G V+ + PASLTKLM+ Y ++ + + P +I
Sbjct: 47 KLYSKNYILIRQRDGKVLLHQNEEDEIAPASLTKLMSVYTALQHIENLQETVQVPASIFP 106
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
S + F +T ++ + ++ S D + +A +L +E FV MN ++
Sbjct: 107 KLEREQASMAGFIGNEEVTYEDLIYGALLPSGADACMTLAITLYGSEDAFVAEMNVQAQR 166
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDM-----------AILSWRIKTDFPQYMHYFQIKGL 193
LGL T F N G+ + GH ++ D+ + +G+
Sbjct: 167 LGLKNTRFRNCTGLDEEGHVSSVSDIATLLKAAVQLPQFTEAFHAPYYSMAPSNKHSEGM 226
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG----ALDR 249
I + + G KTG+T A+G + + A G+++ + V A +
Sbjct: 227 TIYSTMRSTMDQHALSDTAILGGKTGYTKAAGLCLASQAKIGNETWLFVSAHAAGSAETK 286
Query: 250 NTRNKVSASLLS 261
+ ++
Sbjct: 287 PYHILDAMNVYD 298
>gi|49185390|ref|YP_028642.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Sterne]
gi|49179317|gb|AAT54693.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Sterne]
Length = 272
Score = 87.0 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 12/218 (5%)
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT Y+V L + L + IS S T+ + L L++ N
Sbjct: 1 MTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRS 60
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-NAHGVVQHGHY---TTARDMAILSW 175
+A+AE + E F Q MN +K L LS NA G+ + TTA ++ L+
Sbjct: 61 TLALAEHIAGNEDNFTQLMNEKAKQLKLSQPSPFLNATGMNNGTNKLSTTTAIEVGKLAT 120
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFN 227
R+ TDFP ++ ++ + K N + G DG++T F+ S ++
Sbjct: 121 RLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFSTNSNYS 180
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
V++A +GD LI+VIL A + N+ + LL GF
Sbjct: 181 FVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFD 218
>gi|146620|gb|AAA66340.1| D-alanine carboxypeptidase [Escherichia coli str. K-12 substr.
W3110]
Length = 180
Score = 87.0 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 5/136 (3%)
Query: 202 NTNWAVGTFL-GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
N N + DG+KTG T +G+N+VASA +G LI+ ++G R S LL
Sbjct: 3 NRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGREAESKKLL 62
Query: 261 SMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK 316
+ GF + + + + + ++V T + + +
Sbjct: 63 TWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRMKDLKASYVLNS 122
Query: 317 ESHFIDFEKITLLKNK 332
+K ++
Sbjct: 123 SELHAPLQKNQVVGTI 138
>gi|145529840|ref|XP_001450703.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124418325|emb|CAK83306.1| unnamed protein product [Paramecium tetraurelia]
Length = 490
Score = 87.0 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 51/279 (18%), Positives = 97/279 (34%), Gaps = 40/279 (14%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT-PITIS 83
+ + D + + + AS+TK+MT YV ++ + + ++
Sbjct: 201 NVTAKSFIVYDCIEHKTVLKRKSNKRVEVASITKIMTFYVTLLTIELYNLDVKQIKVKVT 260
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-------------- 129
K +SE + + K +++++ L L++ S ND AV IA+++
Sbjct: 261 KKSSETIGTTAELKYNDILSMEDLLYGLMLPSGNDAAVLIAQAIGTIILFNQQNKRLDLK 320
Query: 130 -----------------------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ F++HMN S +G T F HG+ +Y+
Sbjct: 321 LIDIEQLSAEGYFYNHEFRFQYCPIEVFIKHMNKYSSQIGQQNTQFACVHGLANEDNYSC 380
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP-NTNWAVGTFLGADGMKTGFTCASG 225
D+ LS + + K N G G+KTG T ++G
Sbjct: 381 CNDIITLSIECLKYELFQTVISSKEYVTKSLYKQYEWKNTNKLLDKGFFGIKTGITESAG 440
Query: 226 FNIVASAIQGDQSL-IAVILGALDRNTRNKVSASLLSMG 263
+ ++ + I ++L N R + LL
Sbjct: 441 PCLASAYRSNEMDYYIIIVLNCKHMNMRFDDTIILLQHA 479
>gi|118386189|ref|XP_001026215.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila]
gi|89307982|gb|EAS05970.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila SB210]
Length = 1085
Score = 86.6 bits (212), Expect = 4e-15, Method: Composition-based stats.
Identities = 62/342 (18%), Positives = 120/342 (35%), Gaps = 48/342 (14%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT--- 81
K + D + + AS+TK+MT Y+V L + I
Sbjct: 569 DIKSKCVAVYDLDKKEFVLRIKGQKLSQIASITKIMTCYIVCDLLNKYDFKRNDEIKLTL 628
Query: 82 -------ISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL------- 127
+SK AS+ +++ + G +TL + L L++ S ND A AI+E +
Sbjct: 629 KKDQIITVSKIASKMIGTSALLRHGDQLTLWDLLHGLMLPSGNDAAFAISEHVGSLIYES 688
Query: 128 -------------------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+K+F++ MN ++ L L T + N HG+ + + A
Sbjct: 689 SPIFQQKKYQNPKLVSCNPKAGQKEFIKVMNQYAQKLKLQKTFYQNPHGLTNSKNKSCAD 748
Query: 169 DMAILSWRIKTDFP--------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
D+ IL + +Y + + + NTN + + G+KTG
Sbjct: 749 DICILISHAMKNQYFREIVKTIEYTAKISNSRKGSREQTWENTNKLLKSSCYCIGVKTGI 808
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
T A+G + + +++ + VIL L R + + F D +++ +
Sbjct: 809 TPAAGACLSSCFSINNRNFVIVILNTLTLEMRFTETIQI----FKFLVDIYQLDKQSSNI 864
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFID 322
++ + + K + + + D
Sbjct: 865 LKEGFDYQPDQANIIENKYTKNGRQITSSSNFQSNNDLELKD 906
>gi|145632611|ref|ZP_01788345.1| adenylate kinase [Haemophilus influenzae 3655]
gi|144986806|gb|EDJ93358.1| adenylate kinase [Haemophilus influenzae 3655]
gi|309972477|gb|ADO95678.1| Putative penicillin-binding protein 7 [Haemophilus influenzae
R2846]
Length = 292
Score = 86.2 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 44/266 (16%), Positives = 91/266 (34%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ + Y + D V+ + D AS+TKLMT
Sbjct: 3 KKALFILSLCPSFAL-----------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + ++F++ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAAGISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL- 239
+ + ++ K N T +
Sbjct: 168 DIKRLSNLSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHRCK 227
Query: 240 ---IAVI-LGALDRNTRNKVSASLLS 261
I VI L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|145634640|ref|ZP_01790349.1| penicillin-binding protein 7 [Haemophilus influenzae PittAA]
gi|229844548|ref|ZP_04464688.1| penicillin-binding protein 7 [Haemophilus influenzae 6P18H1]
gi|145268185|gb|EDK08180.1| penicillin-binding protein 7 [Haemophilus influenzae PittAA]
gi|229812797|gb|EEP48486.1| penicillin-binding protein 7 [Haemophilus influenzae 6P18H1]
Length = 292
Score = 86.2 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 44/266 (16%), Positives = 91/266 (34%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ + Y + D V+ + D AS+TKLMT
Sbjct: 3 KKALFILSLCPSFVL-----------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + ++F++ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAAGISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL- 239
+ + ++ K N T +
Sbjct: 168 DIKRLSNLSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHRCK 227
Query: 240 ---IAVI-LGALDRNTRNKVSASLLS 261
I VI L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|167745617|ref|ZP_02417744.1| hypothetical protein ANACAC_00309 [Anaerostipes caccae DSM 14662]
gi|167654929|gb|EDR99058.1| hypothetical protein ANACAC_00309 [Anaerostipes caccae DSM 14662]
Length = 316
Score = 85.8 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 67/251 (26%), Positives = 102/251 (40%), Gaps = 26/251 (10%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L++ T V+A PAS+TK+MTA +V + L +TI K+ +
Sbjct: 69 KEALLVNNTTNQVVAAQKVFDKAYPASITKIMTALLVLENCR-----LDDVVTIDKDITF 123
Query: 89 YPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
P + KKG +T++ L LIV SAND A+A+ + ++KKFV MN ++ LG
Sbjct: 124 DDPAAVSLHLKKGDKITVEALLNGLIVMSANDTAIALGRKVAGSDKKFVAMMNKRARELG 183
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWR----------------IKTDFPQYMHYFQI 190
+ T+F N +G+ HYTTA D+ ++ Q
Sbjct: 184 ATNTNFENPNGLHLKNHYTTAYDLYLIFQELVKHNEFLSIAGKASSYIEYTNQKNKLQAF 243
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVILGALDR 249
N N F G KTG T +G ++ + I+VIL A +
Sbjct: 244 DMAATNQYLLGNYNLPHKVF--MLGGKTGTTTEAGSCLIILTKNEEGEEFISVILKASSK 301
Query: 250 NTRNKVSASLL 260
T +L
Sbjct: 302 QTLYHTMTEVL 312
>gi|313115459|ref|ZP_07800926.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622226|gb|EFQ05714.1| serine-type D-Ala-D-Ala carboxypeptidase [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 446
Score = 85.8 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 51/375 (13%), Positives = 129/375 (34%), Gaps = 42/375 (11%)
Query: 1 MRQFL-VIIAMAMLSNIFPFLSIA-------ETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ ++++ A+L + + A + +++T+T ++ + +
Sbjct: 1 MKRIFALVLSFAVLFSCLVLPAGAMFDPTPVYQVQAQSAYIVNTDTNIIVYDKDSTKQVS 60
Query: 53 PASLTKLMT-AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
LTK MT A ++ ++ P IS +N+ + T T A+ +
Sbjct: 61 AGGLTKYMTIALLLTNYADHLDDTFQMPFAISDYVYNT--NNADMRSNETFTYREAMYAM 118
Query: 112 IVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++AN+ A+ +A +L + +V MN S+ +G + + + +A G+
Sbjct: 119 LTRNANEAAMGLAYALSGGDLASWVSQMNILSQRIGTTGSTWTDACGISSGNVTCAVDMY 178
Query: 171 AILSWRIKTDFPQYMH-----YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF----- 220
IL + + D + K + N A+ G ++
Sbjct: 179 LILRYLMSFDAFVEVSGAPSFTMPAKEKHRSSSVLVSQNAALSKSSGGKYYRSAMQGGMC 238
Query: 221 ------TCASGFNIVASAIQGDQSLIAVILGALDRNTRNK---------VSASLLSMGFY 265
+ + + V+ A + + I ++ + D + L+ F
Sbjct: 239 DVTAFKSDSGNQSYVSWANKDGATYIFCVMQSPDTCDDFGYATRRPALCETVKLMDWVFD 298
Query: 266 NKTDRKKIN-----YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ + + ++ I Y + S+ ++ + T + + K +S
Sbjct: 299 SFSIQAALDTDLTLAEIPVKYSSDTSSLQLYPADSMMTLLPSTGDGSVTQKYFHLPDSVC 358
Query: 321 IDFEKITLLKNKITK 335
++ ++ K
Sbjct: 359 APVQQGDVVGTVELK 373
>gi|302670789|ref|YP_003830749.1| D-alanyl-D-alanine carboxypeptidase DacA1 [Butyrivibrio
proteoclasticus B316]
gi|302395262|gb|ADL34167.1| D-alanyl-D-alanine carboxypeptidase DacA1 [Butyrivibrio
proteoclasticus B316]
Length = 387
Score = 85.8 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 55/250 (22%), Positives = 87/250 (34%), Gaps = 12/250 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
E Y L++ + G +A NPAS+TK++T V + + I
Sbjct: 134 ENVLSTYALLVNLDNGTAVASKEGTVRINPASMTKILTLLVAAEHITDLDDTFEMTQEIG 193
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ S F G +T+ + L I+ S D A+ +AE + +++ FV MN+
Sbjct: 194 DFVYSHDCSAVGFSVGEKLTVRDLLYGTILPSGGDAAMCLAEYVAGSQEAFVDMMNDKLT 253
Query: 144 NLGLSAT-HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM------HYFQIKGLEIK 196
LGLS + HF N G+ HY T DMA++ + + + + +
Sbjct: 254 ELGLSDSAHFTNCIGIYNEDHYCTLMDMAMILKAAEENNLCHEVLSTRVYTTSNTVEHPE 313
Query: 197 GKKYPNTNWAVGTFLG----ADGMKTGFTCASGFNIVAS-AIQGDQSLIAVILGALDRNT 251
G N G KTGF SG + I V A
Sbjct: 314 GITISNWFIRRIEDKDTHGEVVGAKTGFVVQSGCCGASYQISNDGTHYICVTADAWSSWR 373
Query: 252 RNKVSASLLS 261
+
Sbjct: 374 CIYDHVEIYD 383
>gi|223043679|ref|ZP_03613723.1| penicillin binding protein 4 [Staphylococcus capitis SK14]
gi|222442957|gb|EEE49058.1| penicillin binding protein 4 [Staphylococcus capitis SK14]
Length = 388
Score = 85.8 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 66/322 (20%), Positives = 126/322 (39%), Gaps = 30/322 (9%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNS 94
G ++ + +PASLTK+MT Y+ +K K + I I+ + S+
Sbjct: 57 GQILYNYNENKKVDPASLTKMMTMYLTLDAVKSGKIHMKDKIKITSKQAQLSQKSNLSSV 116
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
+ G T T+ + L + S+N A+ + E + + F MN +K + THF +
Sbjct: 117 PLEAGQTYTVKDILSQTALASSNAAALILGEKVSGSTSTFTDKMNQQAKTFHMKDTHFTS 176
Query: 155 AHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
G +T++DM I+ + + + P+ + Q K KG+ +
Sbjct: 177 PAGADTELLGSSAPQKYKNQGKTSSTSKDMNIMMYHMIKEHPEILKTTQNKSDTQKGQSF 236
Query: 201 PNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG-----ALDRN- 250
+TN + G DG+KTG T SG+++ + Q L IL +
Sbjct: 237 ESTNLSLKGQPKYYKGTDGLKTG-TSDSGYSLALTNKQHGLRLNETILDVTPYPSETAKL 295
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
RN+++ ++ +K ++ + ++ + V +K I N +
Sbjct: 296 NRNEIANDMMKYYRKQYEYKKVLSKG-EHQIDGKKYTVKKDLYDVVPKHKKWYIAINDKG 354
Query: 311 KEAKDKESHFIDFEKITLLKNK 332
+ HF+D +K +
Sbjct: 355 NAYVHYQRHFLDGASYPSVKAE 376
>gi|289805917|ref|ZP_06536546.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 169
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
DG+KTG T +G+N+VASA +G LI+ ++G R S LL+ GF
Sbjct: 4 VDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNP 63
Query: 273 INYII----KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + + N + ++V T + + + +K +
Sbjct: 64 LKAGKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQV 123
Query: 329 LKNK 332
+
Sbjct: 124 VGTI 127
>gi|16272312|ref|NP_438525.1| penicillin-binding protein 7 [Haemophilus influenzae Rd KW20]
gi|260580573|ref|ZP_05848401.1| penicillin-binding protein 7 [Haemophilus influenzae RdAW]
gi|1172032|sp|P44664|PBP7_HAEIN RecName: Full=D-alanyl-D-alanine endopeptidase;
Short=DD-endopeptidase; AltName: Full=Penicillin-binding
protein 7 homolog; Short=PBP-7; Flags: Precursor
gi|1573331|gb|AAC22022.1| penicillin-binding protein 7, putative [Haemophilus influenzae Rd
KW20]
gi|260092915|gb|EEW76850.1| penicillin-binding protein 7 [Haemophilus influenzae RdAW]
Length = 292
Score = 85.8 bits (210), Expect = 9e-15, Method: Composition-based stats.
Identities = 44/266 (16%), Positives = 92/266 (34%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ + Y + D V+ + D AS+TKLMT
Sbjct: 3 KKALFILSLCPSFAL-----------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + ++F++ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAAGISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL- 239
+ + ++ +K N T +
Sbjct: 168 DIKRLSNLSATYIQAGKQKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHRCK 227
Query: 240 ---IAVI-LGALDRNTRNKVSASLLS 261
I VI L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|218513748|ref|ZP_03510588.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli 8C-3]
Length = 136
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/136 (36%), Positives = 71/136 (52%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+L+ + +LD TG V+A D +PASLTK+MT Y+ F
Sbjct: 1 MAAVLTVTLAVSAPLAALAGSASLILDARTGKVLAAENADTLNHPASLTKMMTLYLTFEA 60
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
LK K TPI +SK A+ PP+ K G T+T+ A+ +IVKSAND A A+AE+L
Sbjct: 61 LKRGKIDWDTPIRMSKYAAARPPTKLGVKAGGTITVREAVYGMIVKSANDAAAAMAETLG 120
Query: 129 KTEKKFVQHMNNTSKN 144
+E F + M ++
Sbjct: 121 GSESGFARMMTAKARQ 136
>gi|148827504|ref|YP_001292257.1| hypothetical protein CGSHiGG_04625 [Haemophilus influenzae PittGG]
gi|148718746|gb|ABQ99873.1| hypothetical protein CGSHiGG_04625 [Haemophilus influenzae PittGG]
Length = 292
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 101/266 (37%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ + Y + D V+ + D AS+TKLMT
Sbjct: 3 KKALFILSLCPSFVL-----------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + ++F++ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAAGISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ K N KTG+ SG+N+V +
Sbjct: 168 DIKRLSNLSATYIQAGEHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHPCK 227
Query: 238 S-LIAVI-LGALDRNTRNKVSASLLS 261
+ I VI L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|314934816|ref|ZP_07842175.1| penicillin-binding protein 4 [Staphylococcus caprae C87]
gi|313652746|gb|EFS16509.1| penicillin-binding protein 4 [Staphylococcus caprae C87]
Length = 388
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 65/322 (20%), Positives = 125/322 (38%), Gaps = 30/322 (9%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNS 94
G ++ + +PASLTK+MT Y+ +K K + I I+ + S+
Sbjct: 57 GQILYNYNENKKVDPASLTKMMTMYLTLDAVKSGKIHMKDKIKITSKQAQLSQKSNLSSV 116
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
+ G T T+ + L + S+N A+ + + + F MN +K + THF +
Sbjct: 117 PLEAGQTYTVKDILSQTALASSNAAALILGAKVSSSTSTFTDKMNQQAKTFHMKDTHFTS 176
Query: 155 AHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
G +T++DM I+ + + + P+ + Q K KG+ +
Sbjct: 177 PAGADTELLGSSAPQKYKNQGKTSSTSKDMNIMMYHMIKEHPEILKTTQNKSDTQKGQSF 236
Query: 201 PNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG-----ALDRN- 250
+TN + G DG+KTG T SG+++ + Q L IL +
Sbjct: 237 ESTNLSLKGQPKYYKGTDGLKTG-TSDSGYSLALTNKQHGLRLNETILDVTPYPSETAKL 295
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
RN+++ ++ +K ++ + ++ + V +K I N +
Sbjct: 296 NRNEIANDMMKYYRKQYEYKKVLSKG-EHQIDGKKYTVKKDLYDVVPKHKKWYIAINDKG 354
Query: 311 KEAKDKESHFIDFEKITLLKNK 332
+ HF+D +K +
Sbjct: 355 NAYVHYQRHFLDGASYPSVKAE 376
>gi|75764312|ref|ZP_00743846.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gi|74488199|gb|EAO51881.1| D-alanyl-D-alanine serine-type carboxypeptidase [Bacillus
thuringiensis serovar israelensis ATCC 35646]
Length = 228
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 27/216 (12%)
Query: 2 RQFLVIIAMAML--------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
++F+ ++ + L SN A + L++ N+G ++ + D +
Sbjct: 12 KRFIALVTVITLACSIFMPYSNASAETGAALNIEAGAAILVEANSGKIVYQKNADELLSI 71
Query: 54 ASLTKLMTAYVVFSFLKEK-KAMLTTPITISKNASEYPPS----NSTFKKGSTMTLDNAL 108
AS+TK+M+ Y+V + + T I +S+ A + N + G + T+
Sbjct: 72 ASMTKMMSEYLVHEAVDKGKPLSGTQKIKVSEYAYKVSQDASLSNVALENGGSYTVKELY 131
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------- 159
+ + + SAN +A+AE++ E FV+ MN+ SK LGL F+N+ G+
Sbjct: 132 EAMAIFSANGATIALAEAIAGKEVDFVKMMNDKSKELGLKNYKFVNSTGLTNKDLKGMHP 191
Query: 160 -----QHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+ +A+D+A L+ + D+P+ + +
Sbjct: 192 EGTTADEENKMSAKDVATLAQHLIKDYPKVLDTAKT 227
>gi|242372443|ref|ZP_04818017.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus epidermidis
M23864:W1]
gi|242349865|gb|EES41466.1| D-alanyl-D-alanine carboxypeptidase [Staphylococcus epidermidis
M23864:W1]
Length = 393
Score = 85.4 bits (209), Expect = 1e-14, Method: Composition-based stats.
Identities = 57/309 (18%), Positives = 122/309 (39%), Gaps = 34/309 (11%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS---- 94
G ++ + + +PASLTK+MT Y+ +K K + + I+ ++ ++
Sbjct: 58 GQILYSYHENKKVDPASLTKMMTMYLTLDAVKSGKLHMNDKVKITNQQAQLSRKSNLSSV 117
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
K G T+ L + S+N A+ + E + K+ F MN +K ++ TH+ +
Sbjct: 118 PLKAGQIYTVKEILSQTALASSNAAALILGEKVSKSTSTFTDQMNQQAKQFHMNHTHYTS 177
Query: 155 AHGVVQH--------------GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
G H +T++DM I+ + + + P+ + + KG+ +
Sbjct: 178 PTGADTHLLGPSAPEKYKNQGKTQSTSKDMNIMMYEMLKNHPEILKITKKTSETQKGQTF 237
Query: 201 PNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG-----ALDRN- 250
+TN + G DG+KTG T SG+++ + Q L IL +
Sbjct: 238 KSTNLSLKGQPKYYKGTDGLKTG-TSDSGYSLALTNKQHRLRLNETILDVSPYPSETAKL 296
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
TRN+++ ++ +K ++ + ++ +++ + + +
Sbjct: 297 TRNEIANDMMKYYRKQYEYKKVLSKGEH-----KIDGTTYDVKKDLYDVVPKHQKWYIAI 351
Query: 311 KEAKDKESH 319
+ H
Sbjct: 352 NSKGNAYVH 360
>gi|145636368|ref|ZP_01792037.1| penicillin-binding protein 7 [Haemophilus influenzae PittHH]
gi|319775769|ref|YP_004138257.1| penicillin-binding protein 7 [Haemophilus influenzae F3047]
gi|329123610|ref|ZP_08252170.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus aegyptius
ATCC 11116]
gi|145270533|gb|EDK10467.1| penicillin-binding protein 7 [Haemophilus influenzae PittHH]
gi|317450360|emb|CBY86576.1| penicillin-binding protein 7 homolog precursor [Haemophilus
influenzae F3047]
gi|327469809|gb|EGF15274.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus aegyptius
ATCC 11116]
Length = 292
Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/266 (17%), Positives = 101/266 (37%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ + Y + D V+ + D AS+TKLMT
Sbjct: 3 KKALFILSLCPSFAL-----------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ ++ + ++F++ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAVGISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQ--G 235
+ + ++ K N KTG+ SG+N+V
Sbjct: 168 DIKRLSNLSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCK 227
Query: 236 DQSLIAVILGALDRNTRNKVSASLLS 261
+ ++ + L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|145631817|ref|ZP_01787576.1| penicillin-binding protein 7 [Haemophilus influenzae R3021]
gi|144982536|gb|EDJ90090.1| penicillin-binding protein 7 [Haemophilus influenzae R3021]
Length = 292
Score = 85.0 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/266 (17%), Positives = 100/266 (37%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ + Y + D V+ + D AS+TKLMT
Sbjct: 3 KKALFILSLCPSFAL-----------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + ++F++ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAAGISRRQFIKKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQ--G 235
+ + ++ K N KTG+ SG+N+V
Sbjct: 168 DIKRLSNLSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCK 227
Query: 236 DQSLIAVILGALDRNTRNKVSASLLS 261
+ ++ + L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|145628720|ref|ZP_01784520.1| adenylate kinase [Haemophilus influenzae 22.1-21]
gi|145638727|ref|ZP_01794336.1| hypothetical protein CGSHiII_08431 [Haemophilus influenzae PittII]
gi|144979190|gb|EDJ88876.1| adenylate kinase [Haemophilus influenzae 22.1-21]
gi|145272322|gb|EDK12230.1| hypothetical protein CGSHiII_08431 [Haemophilus influenzae PittII]
gi|301169066|emb|CBW28663.1| penicillin-binding protein 7 homolog precursor [Haemophilus
influenzae 10810]
gi|309750217|gb|ADO80201.1| Putative penicillin-binding protein 7 [Haemophilus influenzae
R2866]
Length = 292
Score = 85.0 bits (208), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/266 (18%), Positives = 101/266 (37%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ ++ Y + D V+ + PD AS+TKLMT
Sbjct: 3 KKALFILSLCPSFSL-----------AQSYVVYDFTHNRVLESHAPDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + ++F+ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAAGISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQ--G 235
+ + ++ K N KTG+ SG+N+V
Sbjct: 168 DIKRLSNLNATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCK 227
Query: 236 DQSLIAVILGALDRNTRNKVSASLLS 261
+ ++ + L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|324999565|ref|ZP_08120677.1| putative penicillin-binding protein [Pseudonocardia sp. P1]
Length = 310
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 49/224 (21%), Positives = 83/224 (37%), Gaps = 13/224 (5%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
P PAS KL+ A V + + + S + G T+D
Sbjct: 3 PHARERPASTIKLLLALVADE-----VLPPERVVVGTVEDANIDGSRAGVGPGGRYTVDQ 57
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
L L++ S ND A A++ L + + M + + +LG T G+ G ++
Sbjct: 58 LLHGLLLASGNDAAHALSRELGGD-QATLAAMQDAAAHLGARDTRPATPSGLDGPGMSSS 116
Query: 167 ARDMAILSWRIKTDFPQY--MHYFQIKGLEI---KGKKYPNTNWAVGTFLGADGMKTGFT 221
A D+A++ + I G + N + +GT G G K GFT
Sbjct: 117 AYDLALILRAALDRPRIAAALRTPSIPFPGFADRPGFELGNDDRMLGT-PGFLGGKNGFT 175
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVSASLLSMGF 264
A+ V + + + L+ ++ + R + SLL GF
Sbjct: 176 DAARHTFVGAVERDGRRLVVALVRGESQPVRMVDQARSLLDWGF 219
>gi|218660826|ref|ZP_03516756.1| D-alanyl-D-alanine carboxypeptidase protein [Rhizobium etli IE4771]
Length = 245
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/194 (20%), Positives = 68/194 (35%), Gaps = 6/194 (3%)
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ +G F N+ G+ TAR+M L+ ++ +P YF + E N
Sbjct: 1 REIGHDKAVFGNSTGLPNGKSRVTAREMVTLAAALQQSYPNLYPYFALPDFEWNKIFQRN 60
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
N +G LGADG+ TGFT G++IVAS + + L + G R + + +L
Sbjct: 61 RNPLLGLDLGADGLATGFTEGEGYSIVASVQRDGRRLFLALAGIASDKERTEEAKRVLEW 120
Query: 263 GFYNKTDRKKINY----IIKDFYQQNLSNE--VPNISEEVCTTQKEIINYNTQMKEAKDK 316
G +R+ Y + V + ++
Sbjct: 121 GLTAFENRQIFAEHEVVGAASVYGGTARTVDLIAKAPVSVYIPVSNPDRLSARIVYRWPL 180
Query: 317 ESHFIDFEKITLLK 330
+ + L+
Sbjct: 181 TAPVPPDYQAGTLR 194
>gi|145640314|ref|ZP_01795898.1| adenylate kinase [Haemophilus influenzae R3021]
gi|145274900|gb|EDK14762.1| adenylate kinase [Haemophilus influenzae 22.4-21]
Length = 292
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 48/266 (18%), Positives = 100/266 (37%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ + Y + D V+ + PD AS+TKLMT
Sbjct: 3 KKALFILSLCPSFAL-----------AQSYVVYDFTHNRVLESHAPDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + ++F+ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAAGISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQ--G 235
+ + ++ K N KTG+ SG+N+V
Sbjct: 168 DIKRLSNLNATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCK 227
Query: 236 DQSLIAVILGALDRNTRNKVSASLLS 261
+ ++ + L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|291445469|ref|ZP_06584859.1| predicted protein [Streptomyces roseosporus NRRL 15998]
gi|291348416|gb|EFE75320.1| predicted protein [Streptomyces roseosporus NRRL 15998]
Length = 838
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 59/367 (16%), Positives = 118/367 (32%), Gaps = 38/367 (10%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-------------------YYTLLDTNTGHVIAE 44
L++I A++ + P + ++D G +
Sbjct: 446 LLLLIVFAIVQVMRPLPEPSLELTAKPTYTFEGGGTELSWPGQGQSAVMIDGV-GS-LGS 503
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----S 100
P AS+ K+MTAYV+ K IT+ + A +
Sbjct: 504 EGAQKPAPIASVAKVMTAYVILQEHPLKGDEEGEKITVDQQAEDESKRPDESTAPLTKGQ 563
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
+T L+LL++ S N+ A +A +E F+ MN+ +K +G++ + + + G+ +
Sbjct: 564 ELTQRQLLQLLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKEIGMTGSTYTDPSGLEK 623
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
T + + ++ D + + +E K N N + G G+KTG
Sbjct: 624 TTVSTATDQLKLAQAVMRNDVFREIVDMPEVEIEGIDGKIYNNNNLLLQ-PGVSGIKTGS 682
Query: 221 TCASGFNIVASAI--QGDQSL--IAVILGALDRNTRNKV--------SASLLSMGFYNKT 268
+ +G N++ SA + L ++G R S L+ T
Sbjct: 683 STPAGGNLLWSANTKVDGKMLWIYGAVMGQQAGTGRVYDSLELSLQNSLKLIKDAQEAAT 742
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ Y N + ++K + + + T
Sbjct: 743 SATVVKKGDVVGYVDNGFGGQAPVVATKNLKAVGWSGLKVELKVTDNGKGIDHAAKAGTE 802
Query: 329 LKNKITK 335
+ +
Sbjct: 803 VGSVTVG 809
>gi|239942020|ref|ZP_04693957.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
roseosporus NRRL 15998]
Length = 822
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 59/367 (16%), Positives = 118/367 (32%), Gaps = 38/367 (10%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-------------------YYTLLDTNTGHVIAE 44
L++I A++ + P + ++D G +
Sbjct: 430 LLLLIVFAIVQVMRPLPEPSLELTAKPTYTFEGGGTELSWPGQGQSAVMIDGV-GS-LGS 487
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----S 100
P AS+ K+MTAYV+ K IT+ + A +
Sbjct: 488 EGAQKPAPIASVAKVMTAYVILQEHPLKGDEEGEKITVDQQAEDESKRPDESTAPLTKGQ 547
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
+T L+LL++ S N+ A +A +E F+ MN+ +K +G++ + + + G+ +
Sbjct: 548 ELTQRQLLQLLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKEIGMTGSTYTDPSGLEK 607
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
T + + ++ D + + +E K N N + G G+KTG
Sbjct: 608 TTVSTATDQLKLAQAVMRNDVFREIVDMPEVEIEGIDGKIYNNNNLLLQ-PGVSGIKTGS 666
Query: 221 TCASGFNIVASAI--QGDQSL--IAVILGALDRNTRNKV--------SASLLSMGFYNKT 268
+ +G N++ SA + L ++G R S L+ T
Sbjct: 667 STPAGGNLLWSANTKVDGKMLWIYGAVMGQQAGTGRVYDSLELSLQNSLKLIKDAQEAAT 726
Query: 269 DRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ Y N + ++K + + + T
Sbjct: 727 SATVVKKGDVVGYVDNGFGGQAPVVATKNLKAVGWSGLKVELKVTDNGKGIDHAAKAGTE 786
Query: 329 LKNKITK 335
+ +
Sbjct: 787 VGSVTVG 793
>gi|145508567|ref|XP_001440233.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407439|emb|CAK72836.1| unnamed protein product [Paramecium tetraurelia]
Length = 456
Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats.
Identities = 60/294 (20%), Positives = 107/294 (36%), Gaps = 46/294 (15%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT-PITIS 83
+ + D ++++ + ASLTK+MT Y+ L + + ++
Sbjct: 165 NVSAKSFIVYDCIENRIVSQRKCNKRMEIASLTKIMTFYITMVILAKFNLNSKEIRVKVT 224
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK-------------- 129
K ASE + S K +T+ + L L++ S ND A+ IA+++
Sbjct: 225 KKASETIGTTSELKYNDILTIQDLLYGLMLPSGNDAAILIAQTIGTIILFYESNKYLDST 284
Query: 130 -----------------------TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ F+ MN S +G T F HG+ +Y++
Sbjct: 285 LIDIEQMSAEGHYYNVELKTQLCPIEIFISKMNYYSNLMGQQNTQFACVHGLANEDNYSS 344
Query: 167 ARDM-----AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
D+ L + I Y K ++ NTN + G G+KTG T
Sbjct: 345 CHDIVLLSLECLKYDIFHQVISCKEYISKSLNNNKYYEWKNTNKLLE--KGFFGIKTGIT 402
Query: 222 CASGFNIVASAIQGDQSL-IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
++G + ++ ++ I V+L + R + SLL Y K+ I
Sbjct: 403 DSAGPCLASAYRSNEKEYYIIVVLSCKNLQLRFDETISLLQHAKYKKSLNSIIQ 456
>gi|295104652|emb|CBL02196.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
SL3/3]
Length = 447
Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/375 (12%), Positives = 120/375 (32%), Gaps = 42/375 (11%)
Query: 1 MRQFL-VIIAMAMLSNIFPFLSIA-------ETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ ++++ L + + A + +++T+T ++ + +
Sbjct: 1 MKRIFALVLSFVFLLSCLVLPAGAMFDPSPVYQVQAASAYIVNTDTNIIVYDKDSTKQVS 60
Query: 53 PASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
LTK MT V+ ++ + P IS +N+ + T T A+ +
Sbjct: 61 AGGLTKYMTLAVLLTNYADQLDNTFQMPFAISDYVYNT--NNADMRSNETFTYREAMYAM 118
Query: 112 IVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++AN+ A+ +A +L + +V MN S+ +G +A+ + +A G+
Sbjct: 119 LTRNANEAAMGVAYTLSGGDLDGWVAQMNTLSQRIGTTASSWTDACGIDSGNTTCAVDMY 178
Query: 171 AILSWRIKTDFPQYMH-----YFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTG 219
IL + + D + K + N A + A
Sbjct: 179 LILRYLMSFDAFVEVSGAPSFTMPAKEKHRSSSVLVSQNAALSKASGGSYYRSAMQGGMC 238
Query: 220 FTCASGFN-----IVASAIQGDQSLIAVILGALDRNTRN---------KVSASLLSMGFY 265
A + V+ + + I ++ + D + L+ F
Sbjct: 239 SVTAFKNDTGTQSYVSWGNKDGATYIFCVMDSPDSCDTFGYANRRPALFETVKLMDWVFD 298
Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNI-----SEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ + + ++ + + + ++ + T + K +
Sbjct: 299 SFSIQAALDTDLTIAEIPVRYSSDTDTLQLYPNDSMMTLLPSTSDGTVTQKYFHLPDYVC 358
Query: 321 IDFEKITLLKNKITK 335
++ ++ K
Sbjct: 359 APIQQGDVVGTVELK 373
>gi|229846451|ref|ZP_04466559.1| hypothetical protein CGSHi7P49H1_07260 [Haemophilus influenzae
7P49H1]
gi|229810544|gb|EEP46262.1| hypothetical protein CGSHi7P49H1_07260 [Haemophilus influenzae
7P49H1]
Length = 292
Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 50/266 (18%), Positives = 100/266 (37%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ + Y + D V+ + D AS+TKLMT
Sbjct: 3 KKALFILSLCPSFAL-----------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + ++F+ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAAGISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ K N KTG+ SG+N+V +
Sbjct: 168 DIKRLSNLSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHPCK 227
Query: 238 S-LIAVI-LGALDRNTRNKVSASLLS 261
+ I VI L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|88856162|ref|ZP_01130822.1| D-alanyl-D-alanine endopeptidase [marine actinobacterium PHSC20C1]
gi|88814481|gb|EAR24343.1| D-alanyl-D-alanine endopeptidase [marine actinobacterium PHSC20C1]
Length = 408
Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 59/331 (17%), Positives = 110/331 (33%), Gaps = 29/331 (8%)
Query: 8 IAMAMLSNIFPFLSIA----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ +LS P L+ + + LD TG V+A + P AS+TK++T+
Sbjct: 41 VSATVLSAAAPELAEPELTLPSYGASAISALD-RTG-VLARAGSEEPLPIASITKVITSL 98
Query: 64 VVFSFLK-----------EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
VV + L G ++ + +++
Sbjct: 99 VVLDAKPLAVDEAGPTITFGQPDLDYYY----TQQAQFGLVWPVFDGQQLSQREVMNVVL 154
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+ SAN+ A ++A +EK F K GL T A G+ + +TA D+
Sbjct: 155 LASANNYAQSLAHWAFGSEKAFTAAAAQWLKEQGLEQTTLTEASGIQETNQ-STAEDLTE 213
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
L+ + N N +G G DG+KTG ++ SA
Sbjct: 214 LARLAIENPVIAEIVATPSTEVPGLGTVSNRNQLLGI-DGVDGIKTGTLEDDWACLLFSA 272
Query: 233 IQ----GDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
++ + V+LG D T L++ T+ + + +
Sbjct: 273 DVVIGGEKKTFVGVVLGGPDHPTVAAAIRELIADATAGYTEVTLASDGDEFAEYDTPWGD 332
Query: 289 VPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
+ T K+++ + ++ D
Sbjct: 333 --EAAAVASNTVKKLVWGDDEITITVDASPV 361
>gi|319653046|ref|ZP_08007150.1| hypothetical protein HMPREF1013_03765 [Bacillus sp. 2_A_57_CT2]
gi|317395265|gb|EFV75999.1| hypothetical protein HMPREF1013_03765 [Bacillus sp. 2_A_57_CT2]
Length = 290
Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/226 (23%), Positives = 88/226 (38%), Gaps = 11/226 (4%)
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN-LGLSATHFMNAHGVVQ 160
M L ++ +++ S ND A +IAE L K F +++N+ + GL THF+N HG+
Sbjct: 1 MPLIKLVQGMLINSGNDAAWSIAEHLDGNMKAFSENLNHYLEESAGLKNTHFVNPHGLFD 60
Query: 161 HGHYTTARDMAILSWRIKTD------FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214
HYTTA D+A L+ + + + K + + F G
Sbjct: 61 ENHYTTAGDLAKLTNYALKNETFREIYGTKEMKWAGKSWDTTIFTHHRMLKGEVPFEGVT 120
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
G KTGF + + SA L A++L A + + +LL+ GF N +
Sbjct: 121 GGKTGFVDEAKQTLATSAENDSIKLTAIVLKAEFKRDIYNDTKNLLNYGFSNFETSTLSS 180
Query: 275 YIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ + E V T + I + K + +
Sbjct: 181 TDVFP----SDGKTYTTGGENVAITLPKGIYEEDITSKGKLQIKNE 222
>gi|160943144|ref|ZP_02090381.1| hypothetical protein FAEPRAM212_00629 [Faecalibacterium prausnitzii
M21/2]
gi|158445613|gb|EDP22616.1| hypothetical protein FAEPRAM212_00629 [Faecalibacterium prausnitzii
M21/2]
Length = 447
Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 47/375 (12%), Positives = 121/375 (32%), Gaps = 42/375 (11%)
Query: 1 MRQFL-VIIAMAMLSNIFPFLSIA-------ETNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ ++++ L + + A + +++T+T ++ + +
Sbjct: 1 MKRIFALVLSFVFLLSCLVLPAGAMFDPSPVYQVQAASAYIVNTDTNIIVYDKDSTKQVS 60
Query: 53 PASLTKLMTAYVVF-SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
LTK MT V+ ++ + P IS +N+ + T T A+ +
Sbjct: 61 AGGLTKYMTLAVLLTNYADQLDNTFQMPFAISDYVYNT--NNADMRSNETFTYREAMYAM 118
Query: 112 IVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++AN+ A+ +A +L + +V MN S+ +G +A+++ +A G+
Sbjct: 119 LTRNANEAAMGVAYTLAGGDLDGWVAQMNTLSQRIGTTASNWTDACGIDSGNTTCAVDMY 178
Query: 171 AILSWRIKTDFPQYMH-----YFQIKGLEIKGKKYPNTNWA------VGTFLGADGMKTG 219
IL + + D + K + N A + A
Sbjct: 179 LILRYLMSFDAFVEVSGAPSFTMPAKEKHRSSSVLVSQNAALSKASGGSYYRSAMQGGMC 238
Query: 220 FTCASGFN-----IVASAIQGDQSLIAVILGALDRNTRN---------KVSASLLSMGFY 265
A + V+ + + I ++ + D + L+ F
Sbjct: 239 NVTAFKNDTGTQSYVSWGNKDGATYIFCVMDSPDSCDTFGYANRRPALFETVKLMDWVFD 298
Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNI-----SEEVCTTQKEIINYNTQMKEAKDKESHF 320
+ + + ++ + + + ++ + T + K +
Sbjct: 299 SFSIQAALDTDLTIAEIPVRYSSDTDTLQLYPNDSMMTLLPSTSDGTVTQKYFHLPDYVC 358
Query: 321 IDFEKITLLKNKITK 335
++ ++ K
Sbjct: 359 APIQQGDVVGTVELK 373
>gi|228475540|ref|ZP_04060258.1| penicillin binding protein 4 [Staphylococcus hominis SK119]
gi|314935406|ref|ZP_07842759.1| penicillin-binding protein 4 [Staphylococcus hominis subsp. hominis
C80]
gi|228270322|gb|EEK11757.1| penicillin binding protein 4 [Staphylococcus hominis SK119]
gi|313656741|gb|EFS20480.1| penicillin-binding protein 4 [Staphylococcus hominis subsp. hominis
C80]
Length = 383
Score = 84.3 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 64/326 (19%), Positives = 118/326 (36%), Gaps = 32/326 (9%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NS 94
G ++ + +PASL+K+MT Y+ + + K L + I+ + +
Sbjct: 57 GQILYNFQGNKEADPASLSKMMTLYLTLEAVHQGKLKLDDKVKITSAYDQLSKKPNLTSV 116
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
+G T+ + L + S+N A+ + E + F MN +K + THF+N
Sbjct: 117 PLNQGQIYTIKDLLTQAALPSSNSAAMILGEQVSGNTSTFTDKMNAQAKAFHMKHTHFVN 176
Query: 155 AHGVV--------------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
G +T+ D+AILS + P+ ++ Q+ KG +
Sbjct: 177 PAGAANDLLGQQAPKKYRKDIYPKSTSEDIAILSHHLIAKHPKILNITQLSQDTQKGYTF 236
Query: 201 PNTNWAVGTFL----GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG------ALDRN 250
NTN ++ G DG+KTG T G+NI + Q L V++ +
Sbjct: 237 NNTNLSIKHEPLYLKGTDGLKTG-TSDKGYNIALTNQQNHLRLNEVVMNVAPYMDNNAKY 295
Query: 251 TRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
RN++ ++ +K ++ + + + +
Sbjct: 296 NRNRIGNAIFKHYRKEYEYKKVLSKGEHKIGGKTYK---VDKNLYDTVPKDNKKWDIRIN 352
Query: 311 KEAKDKESHFIDFEKITLLKNKITKK 336
K+ K + DF T KK
Sbjct: 353 KDGKAYVHYKRDFLPETTYPRVNAKK 378
>gi|260582544|ref|ZP_05850334.1| penicillin-binding protein 7 [Haemophilus influenzae NT127]
gi|260094355|gb|EEW78253.1| penicillin-binding protein 7 [Haemophilus influenzae NT127]
Length = 292
Score = 84.3 bits (206), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/266 (17%), Positives = 99/266 (37%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ + Y + D V+ + D AS+TKLMT
Sbjct: 3 KKALFILSLCPSFAL-----------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + ++F+ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAAGISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQ--G 235
+ + ++ K N KTG+ SG+N+V
Sbjct: 168 DIKRLSNLSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCK 227
Query: 236 DQSLIAVILGALDRNTRNKVSASLLS 261
+ ++ + L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|328883123|emb|CCA56362.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC
10712]
Length = 781
Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 62/284 (21%), Positives = 116/284 (40%), Gaps = 34/284 (11%)
Query: 1 MRQ--------FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN----------TGHVI 42
MR+ L++I A++ + P + A T + G V
Sbjct: 379 MRRVRIWTPLVLLLLIVFAIVQMVRPLPAPALTLTAAPTFTFEGGELKLPFPAEGQGAVE 438
Query: 43 AE-------NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PP 91
E P AS+TK MTAYV+ K I I + A++
Sbjct: 439 VEGVGSMGTYGAQKPAPIASVTKTMTAYVILRDHPLKGKQQGPEIEIDQKAADQGKAEHE 498
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S + +KG T T L+LL++ SAN++A +A +E FV+ MN +K LG++ +
Sbjct: 499 STAAVQKGQTYTEKELLELLMIPSANNVARLLARWDAGSEAAFVEKMNAAAKQLGMTQST 558
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ + G++ T + + ++ D + + ++ + N N +
Sbjct: 559 YTDPSGLLDSTMSTPQDQLKLAKAVMQYDVFREIVNMPNVTVDGIPGRIENNNNILLK-P 617
Query: 212 GADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILGALDRNT 251
G G+KTG + +G N++ +A ++ ++ +++GA D
Sbjct: 618 GVSGIKTGSSTPAGGNLLWAANTVVDGQNRRILGIVMGAKDAAE 661
>gi|319896693|ref|YP_004134886.1| penicillin-binding protein 7 homolog precursor [Haemophilus
influenzae F3031]
gi|317432195|emb|CBY80547.1| penicillin-binding protein 7 homolog precursor [Haemophilus
influenzae F3031]
Length = 292
Score = 83.9 bits (205), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/266 (17%), Positives = 99/266 (37%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ + Y + D V+ + D AS+TKLMT
Sbjct: 3 KKALFILSLCPSFAL-----------AQSYVVYDFTHNRVLESHASDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + ++F+ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAAGISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQ--G 235
+ + ++ K N KTG+ SG+N+V
Sbjct: 168 DIKRLSNLNATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCK 227
Query: 236 DQSLIAVILGALDRNTRNKVSASLLS 261
+ ++ + L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|68248967|ref|YP_248079.1| penicillin-binding protein 7-like protein [Haemophilus influenzae
86-028NP]
gi|68057166|gb|AAX87419.1| penicillin-binding protein 7 homolog precursor [Haemophilus
influenzae 86-028NP]
Length = 292
Score = 83.9 bits (205), Expect = 4e-14, Method: Composition-based stats.
Identities = 48/266 (18%), Positives = 98/266 (36%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ Y + D V+ PD AS+TKLMT
Sbjct: 3 KKALFILSLC-----------PSFLLAQSYVVYDFTHNRVLESYAPDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + ++F+ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAAGISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQ--G 235
+ + ++ K N KTG+ SG+N+V
Sbjct: 168 DIKLLSNLSATYIQAGKHKLYIKNTNKLVRDEIFDAAVNKTGYIRESGYNLVFINKHLCK 227
Query: 236 DQSLIAVILGALDRNTRNKVSASLLS 261
+ ++ + L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|325577791|ref|ZP_08148066.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus
parainfluenzae ATCC 33392]
gi|325160536|gb|EGC72662.1| serine-type D-Ala-D-Ala carboxypeptidase [Haemophilus
parainfluenzae ATCC 33392]
Length = 291
Score = 83.5 bits (204), Expect = 4e-14, Method: Composition-based stats.
Identities = 50/269 (18%), Positives = 101/269 (37%), Gaps = 20/269 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ L ++ + Y + D V+ + P+H AS+TKLM
Sbjct: 2 LKKVLSVLCLV-----------PAVATAQSYIVYDFTHDRVLESSSPNHVQPIASVTKLM 50
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA V + + + +++ K + ++ + LK ++V S N A
Sbjct: 51 TANVFLENNRNANCTASITD---DDYDYIKGTHTKLPKYTPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ S + +F+Q MN ++ LG+ +T F ++ G+ + + + + +
Sbjct: 108 HALSRSAGMSRLQFIQKMNEKARELGMRSTRFSDSSGLSDSNISSAMDLVKLAKYSLNKT 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQG-D 236
+ + ++ G+ N KTG+ SG+N+V +
Sbjct: 168 QIKNLSNMPSAFIQAGGRSVFVKNTNKLVREEVFDAAVNKTGYIRESGYNLVFVNKNPCN 227
Query: 237 QSLIAVI-LGALDRNTRNKVSA-SLLSMG 263
S I VI L R+ + L G
Sbjct: 228 HSTIGVISLNNHSSAFRSNFTKGKLEQYG 256
>gi|240851509|ref|ZP_04752260.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202]
gi|240310027|gb|EER48319.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202]
Length = 274
Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 53/269 (19%), Positives = 104/269 (38%), Gaps = 20/269 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ ++ + ++ Y + D V+ P+ AS+TKLM
Sbjct: 2 LKKLFSVLLIVPSFSM-----------AQSYVVYDFTHDRVLESRAPNSVQPIASVTKLM 50
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA + K K T S + + K + ++ D LK ++V S N A
Sbjct: 51 TANIFLENNKNKNCTATITEADSD---FIKGTGTKLPKHTPISCDELLKAMMVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ S T +F+Q MN ++ LG+ +T F ++ G+ + + + + ++
Sbjct: 108 HALSRSAGMTRPQFIQKMNEKAQQLGMRSTRFSDSSGLSSANISSAMDLVKLARYSLQKP 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADG---MKTGFTCASGFNIVASAIQG-D 236
Q + +++ ++ N + KTG+ SG+N+V Q +
Sbjct: 168 KLQELSNTPATLVQVGKRQVFMQNTSALVREEIFNAALNKTGYIRESGYNLVFVNKQQCN 227
Query: 237 QSLIAVI-LGALDRNTRNKVSA-SLLSMG 263
+ I VI L R+ + L G
Sbjct: 228 HATIGVISLNNYSSAIRSNFTKTKLEQYG 256
>gi|240947887|ref|ZP_04752327.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus
minor NM305]
gi|240297849|gb|EER48285.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Actinobacillus
minor NM305]
Length = 275
Score = 83.1 bits (203), Expect = 5e-14, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 96/242 (39%), Gaps = 9/242 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
Y + D V+ P+ AS+TKLMTA V + + ++ ++A
Sbjct: 2 AQSYVVYDFTHDRVLESRSPNSVQPIASVTKLMTANVFLENNQNRNCAISITD---EDAD 58
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+++ + ++ LK ++V S N A A++ + + +F+Q MN ++ LG+
Sbjct: 59 YIKGTSTKLPTYTPISCQELLKAMLVHSDNYAAHALSRAAGMSRTQFIQKMNEKARELGM 118
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+T F ++ G+ + + + + + Q + + K N
Sbjct: 119 RSTRFSDSSGLSSANVSSVMDLVKLAKYSLGKSQIQILSNMAAAYIHAGRKNIFVKNTNK 178
Query: 208 GTFL---GADGMKTGFTCASGFNIVASAIQG-DQSLIAVI-LGALDRNTRNKVSA-SLLS 261
A KTG+ SG+N+V Q +++ I VI L R++ + L
Sbjct: 179 LVREELFSAAINKTGYIRESGYNLVFINKQPCNRATIGVISLNNSSSAYRSQFTKNKLEQ 238
Query: 262 MG 263
G
Sbjct: 239 YG 240
>gi|33150032|gb|AAP97032.1| putative D-alanyl-D-alanine carboxypeptidase [Lactobacillus reuteri
DSM 20016]
Length = 162
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAET-NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M++ + I+++ M+ + +A + D +TG +I + D AS+TK
Sbjct: 1 MKKLTVFILSLFMMLMVGSQSVLANNRIDASAAIMADASTGQIIYKQNVDKALPVASITK 60
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNA----SEYPPSNSTFKKGSTMTLDNALKLLIVK 114
L+T V+ +++K+ T + I+ ++ S+ K G + ++ + +VK
Sbjct: 61 LLTILVIEDEIQQKQLSWDTQVKITPEIAAISNDAAYSSIGLKSGQSYSVRTLINAALVK 120
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
SA+ VA+A + +F M +K +G++ T+ +N
Sbjct: 121 SADGATVALATATGDGTDEFNLKMMQKAKKIGMTKTNIVN 160
>gi|93007306|gb|ABE97154.1| putative D-alanyl-D-alanine carboxypeptidase [Pasteuria ramosa]
Length = 179
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 3/128 (2%)
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270
G DG+KTGFT +GF I ++A + + +IAV++G RN A++ F N
Sbjct: 1 KGVDGLKTGFTGNAGFCISSTAKRDNLRVIAVVMGEPSSKVRNADIAAMFDYTFANYKRH 60
Query: 271 KKINYII---KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKIT 327
+ + + ++ + + N +K + +K T
Sbjct: 61 IIYKAGTTIARSKIKGGVIEDLVIKAPYDIGILLKKTGVNFNIKTKLNMNPLIAPLKKGT 120
Query: 328 LLKNKITK 335
+ + + K
Sbjct: 121 KIGDFVIK 128
>gi|148825354|ref|YP_001290107.1| hypothetical protein CGSHiEE_01190 [Haemophilus influenzae PittEE]
gi|148715514|gb|ABQ97724.1| hypothetical protein CGSHiEE_01190 [Haemophilus influenzae PittEE]
Length = 292
Score = 83.1 bits (203), Expect = 6e-14, Method: Composition-based stats.
Identities = 48/266 (18%), Positives = 98/266 (36%), Gaps = 21/266 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ L I+++ Y + D V+ PD AS+TKLMT
Sbjct: 3 KKALFILSLC-----------PSFLLAQSYVVYDFTHNRVLESYAPDSIQPIASVTKLMT 51
Query: 62 AYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A V K I I+ ++ + + K ++ + LK ++V S N A
Sbjct: 52 ANVFLENNK----NPNCRIAITKEDTDRIKGTGTKLPKNIPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + ++F+ MN + LG+ +T F ++ G+ + + + + + +
Sbjct: 108 HALSRAAGISRRQFINKMNEKAHQLGMYSTRFHDSSGLSSYNISSPMDLVKLAKYSLNKA 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQ--G 235
+ + ++ K N KTG+ SG+N+V
Sbjct: 168 DIKRLSNLSATYIQAGKYKLYIKNTNKLVRDEIFDAAVNKTGYIQESGYNLVFINKHLCK 227
Query: 236 DQSLIAVILGALDRNTRNKVSASLLS 261
+ ++ + L R+ + S L
Sbjct: 228 NATIGVISLNNTSSAYRSSFTKSKLE 253
>gi|239988485|ref|ZP_04709149.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
roseosporus NRRL 11379]
Length = 384
Score = 82.7 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 55/325 (16%), Positives = 109/325 (33%), Gaps = 19/325 (5%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ ++D G + P AS+ K+MTAYV+ K IT+ + A
Sbjct: 34 QGQSAVMIDGV-GS-LGSEGAQKPAPIASVAKVMTAYVILQEHPLKGDEEGEKITVDQQA 91
Query: 87 SEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+ +T L+LL++ S N+ A +A +E F+ MN+ +
Sbjct: 92 EDESKRPDESTAPLTKGQELTQRQLLQLLMIPSGNNAARLLARWDAGSEDAFIDKMNDAA 151
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
K +G++ + + + G+ + T + + ++ D + + +E K N
Sbjct: 152 KEIGMTGSTYTDPSGLEKTTVSTATDQLKLAQAVMRNDVFREIVDMPEVEIEGIDGKIYN 211
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAI--QGDQSL--IAVILGALDRNTRNKV--- 255
N + G G+KTG + +G N++ SA + L ++G R
Sbjct: 212 NNNLLLQ-PGVSGIKTGSSTPAGGNLLWSANTKVDGKMLWIYGAVMGQQAGTGRVYDSLE 270
Query: 256 -----SASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
S L+ T + Y N + ++
Sbjct: 271 LSLQNSLKLIKDAQEAATSATVVKKGDVVGYVDNGFGGQAPVVATKNLKAVGWSGLKVEL 330
Query: 311 KEAKDKESHFIDFEKITLLKNKITK 335
K + + + T + +
Sbjct: 331 KVTDNGKGIDHAAKAGTEVGSVTVG 355
>gi|213025793|ref|ZP_03340240.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 129
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ +S + Y L+D N+G V+AE D +PASL
Sbjct: 4 LTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
TK+MT+YV+ +K K T +T+ +A
Sbjct: 64 TKMMTSYVIGQAMKAGKFKETDLVTVGNDAWAT 96
>gi|222874969|gb|EEF12100.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ L D +G +A D PASLTKLMTAY+ F LKEK+ L +T +
Sbjct: 247 PQVAAKSWMLYDVTSGQALASQNADMRIEPASLTKLMTAYLAFEALKEKRLTLDQTVTPT 306
Query: 84 K 84
Sbjct: 307 D 307
>gi|226330782|ref|ZP_03806300.1| hypothetical protein PROPEN_04703 [Proteus penneri ATCC 35198]
gi|225201577|gb|EEG83931.1| hypothetical protein PROPEN_04703 [Proteus penneri ATCC 35198]
Length = 109
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDR 270
+ DG+KTG T +G+N+V+SA +GD LIAV+LGA R S LL GF
Sbjct: 1 MNVDGVKTGHTNGAGYNLVSSATEGDMRLIAVVLGAPSDKVRFAESEKLLGWGFRFFETV 60
Query: 271 KKINY----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQM 310
+ + + + ++ + T + ++
Sbjct: 61 TPVKAATPLTSQKVWYGDKGEVALGVANDASITIPKGELKKSES 104
>gi|301154684|emb|CBW14147.1| D-alanyl-D-alanine endopeptidase [Haemophilus parainfluenzae T3T1]
Length = 291
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 49/269 (18%), Positives = 101/269 (37%), Gaps = 20/269 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ L ++ + Y + D V+ + P+H AS+TKLM
Sbjct: 2 LKKVLSVLCLV-----------PAMATAQSYVVYDFTHDRVLESSSPNHVQPIASVTKLM 50
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA V + + + +++ K + ++ + LK ++V S N A
Sbjct: 51 TANVFLENNRNTNCTASITD---DDYDYIKGTHTKLPKYTPISCNELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ S + +F+Q MN ++ LG+ +T F ++ G+ + + + + +
Sbjct: 108 HALSRSAGMSRLQFIQKMNEKARELGMRSTRFSDSSGLSDSNISSVMDLVKLAKYSLNKA 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD---GMKTGFTCASGFNIVASAIQG-D 236
+ + ++ G+ N KTG+ SG+N+V +
Sbjct: 168 QIKNLSNMPSAFIQAGGRSVFVKNTNKLVREEVFDAAINKTGYIRESGYNLVFVNKNPCN 227
Query: 237 QSLIAVI-LGALDRNTRNKVSA-SLLSMG 263
++ I VI L R + L G
Sbjct: 228 RATIGVISLNNHSSAFRTNFTKGKLEQYG 256
>gi|223041814|ref|ZP_03612004.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202]
gi|223017383|gb|EEF15804.1| penicillin-binding protein 7 precursor [Actinobacillus minor 202]
Length = 291
Score = 82.7 bits (202), Expect = 7e-14, Method: Composition-based stats.
Identities = 46/269 (17%), Positives = 101/269 (37%), Gaps = 20/269 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+++ + A+ + ++ Y + D V+ P+ AS+TKLM
Sbjct: 2 LKKLCSLFALLPVVSM-----------AQSYVVYDFTHDRVLESRSPNSVQPIASVTKLM 50
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
TA V + + ++ ++A +++ + ++ LK ++V S N A
Sbjct: 51 TANVFLENNQNRNCAISITD---EDADYIKGTSTKLPTYTPISCQELLKAMLVHSDNYAA 107
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A++ + + +F+Q MN ++ LG+ +T F ++ G+ + + + + +
Sbjct: 108 HALSRAAGMSRTQFIQKMNEKARELGMRSTRFSDSSGLSSANVSSVMDLVKLAKYSLGKS 167
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL---GADGMKTGFTCASGFNIVASA--IQG 235
Q + + K N A KTG+ SG+N+V
Sbjct: 168 QIQVLSNMAAAYIHAGRKNIFVKNTNKLVREELFSAAINKTGYIRESGYNLVFINKQPCN 227
Query: 236 DQSLIAVILGALDRNTRNKVSA-SLLSMG 263
++ + L R++ + L G
Sbjct: 228 SATIGVISLNNSSSAYRSQFTKNKLEQYG 256
>gi|47570691|ref|ZP_00241288.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
gi|47552642|gb|EAL11096.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
Length = 259
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 53/209 (25%), Positives = 83/209 (39%), Gaps = 27/209 (12%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
TG ++ E PD AS++KL+ Y V +KE K T + IS A E +N
Sbjct: 43 TGKILHEQNPDELLAIASMSKLIVVYAVLEAIKEGKITWDTKVNISDYAYEVSRNNEFSN 102
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQHMNNTSKNLGLSATHFM 153
++ L A + +L + +EK F+ N +K LGL F+
Sbjct: 103 VPFEKGRQYTVRELYHSIVIFSANGSSIALAELLAGSEKNFLNLANEHAKKLGLKKYKFV 162
Query: 154 NAHGV--------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---- 195
NA G+ + +ARDM ILS + T +P+ + + +
Sbjct: 163 NATGLNNADLKGKHPEGTDPNAENSMSARDMGILSKAMITKYPEMLEDTKQRFRNFPDNH 222
Query: 196 -KGKKYPNTNWA----VGTFLGADGMKTG 219
K + N NW + G +G+KTG
Sbjct: 223 PKPIRMENWNWMLPGAAFAYEGTNGLKTG 251
>gi|325473431|gb|EGC76626.1| hypothetical protein HMPREF9353_02421 [Treponema denticola F0402]
Length = 303
Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats.
Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 3/188 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
FL + + + N Y L+ NTG ++AE+ D PASLTKL+T Y
Sbjct: 76 FLPVKSSSSEINPSTQKIELPKIDADSYILIHANTGTILAESNADKIIPPASLTKLVTIY 135
Query: 64 VVFSFLKEKKAM--LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + K + P + + +++++ ++ + V S ND A+
Sbjct: 136 TMLQKPEFKDLKKVVFPPKEAWAIFLPKGAAWMGLGENQSLSIEELIRGMAVCSGNDAAL 195
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A A + +KF MN K +GL +T F ++ G+ + TTARD A+ S +
Sbjct: 196 AAALLTEGSLEKFTLKMNEAVKTMGLKSTRFEDSSGL-SEKNQTTARDFALFSLHYLKQY 254
Query: 182 PQYMHYFQ 189
P+ + F
Sbjct: 255 PENLKKFH 262
>gi|291439005|ref|ZP_06578395.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
gi|291341900|gb|EFE68856.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
Length = 853
Score = 82.3 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 72/360 (20%), Positives = 132/360 (36%), Gaps = 36/360 (10%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGH---------VIAENY 46
L++I A++ N+ P + + + +G +
Sbjct: 463 LLLVIVFAIVQNVRPLPAPTLELTAQDSYTFEGDKVDIPWPASGQAALDVQGIGTFGSSG 522
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTM 102
P AS+ K+MTAY+V K I I + A + S G +
Sbjct: 523 EQKPVPIASVAKVMTAYLVLRDHPLKSGAEGPMIKIDELAEKQSDAGDESTVDVTAGDEI 582
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ A++ +++ SAN++A +A +E+ FV+ MN +K+LG++ T + + G+
Sbjct: 583 SQREAIEAVLIASANNVARLLARWDAGSEEAFVEKMNEAAKDLGMTDTTYTDPSGLNNTT 642
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+TA D L+ + + KGK +PN N VG+ G G+KTG T
Sbjct: 643 -VSTAVDQVKLAKAAMQQPVFREVAAMMSYDDYKGKNWPNWNQLVGSN-GVVGIKTGTTT 700
Query: 223 ASGFNIVASAIQ---GDQSLI--AVILGALDRNTRNKVSAS------LLSMGFYNKTDRK 271
++ N+V +A + G+ LI AV+ +SA+ L+
Sbjct: 701 SALGNLVFAAKKEVDGETRLIIGAVVRQPAGGKENTILSAALTSSDLLIRAAQGALESAT 760
Query: 272 KINYIIKDFYQQNLSN--EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ Y + ++E+V ++ D K+ L
Sbjct: 761 ILKKGTVVGYVDDGLGGRTPVAVTEDVEAVGWAGLSVKLTFAADDDLPHQAEAGTKVGTL 820
>gi|239930641|ref|ZP_04687594.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
Length = 855
Score = 82.3 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 72/360 (20%), Positives = 132/360 (36%), Gaps = 36/360 (10%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN--------TGH---------VIAENY 46
L++I A++ N+ P + + + +G +
Sbjct: 465 LLLVIVFAIVQNVRPLPAPTLELTAQDSYTFEGDKVDIPWPASGQAALDVQGIGTFGSSG 524
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTM 102
P AS+ K+MTAY+V K I I + A + S G +
Sbjct: 525 EQKPVPIASVAKVMTAYLVLRDHPLKSGAEGPMIKIDELAEKQSDAGDESTVDVTAGDEI 584
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ A++ +++ SAN++A +A +E+ FV+ MN +K+LG++ T + + G+
Sbjct: 585 SQREAIEAVLIASANNVARLLARWDAGSEEAFVEKMNEAAKDLGMTDTTYTDPSGLNNTT 644
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+TA D L+ + + KGK +PN N VG+ G G+KTG T
Sbjct: 645 -VSTAVDQVKLAKAAMQQPVFREVAAMMSYDDYKGKNWPNWNQLVGSN-GVVGIKTGTTT 702
Query: 223 ASGFNIVASAIQ---GDQSLI--AVILGALDRNTRNKVSAS------LLSMGFYNKTDRK 271
++ N+V +A + G+ LI AV+ +SA+ L+
Sbjct: 703 SALGNLVFAAKKEVDGETRLIIGAVVRQPAGGKENTILSAALTSSDLLIRAAQGALESAT 762
Query: 272 KINYIIKDFYQQNLSN--EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ Y + ++E+V ++ D K+ L
Sbjct: 763 ILKKGTVVGYVDDGLGGRTPVAVTEDVEAVGWAGLSVKLTFAADDDLPHQAEAGTKVGTL 822
>gi|293367840|ref|ZP_06614486.1| penicillin-binding protein 4 [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291318031|gb|EFE58431.1| penicillin-binding protein 4 [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 422
Score = 82.3 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 70/326 (21%), Positives = 134/326 (41%), Gaps = 34/326 (10%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
P + G V+ + + + +PAS+TKLMT Y+ F L K I I+ + +
Sbjct: 51 PKAMTITDENGQVLYDYHGETSSDPASITKLMTLYLTFDALNNGKISKDQKIKITSDYEK 110
Query: 89 YPP----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
S KKG T T+D +K + + S+N + + E + + KF MN +K
Sbjct: 111 MSALPNLSTVKLKKGQTYTIDEIMKQVSLASSNPATLILGEKIDGSTSKFTDRMNEKAKE 170
Query: 145 LGLSATHFMNAHG--------------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
LG++ THF N G + TT++D+++L + P+ ++Y ++
Sbjct: 171 LGMNHTHFTNPSGASNDLLKPYEPKKYKDEAKTKTTSQDISLLIHSLLKKHPEVINYTKL 230
Query: 191 KGLEIKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ + + TN +LG DG+KTG T G++I + Q L A IL
Sbjct: 231 THGKQYNQDFETTNLSLKGEPEEYLGTDGLKTG-TSDEGYSIALTNNQDHLRLNATILDV 289
Query: 247 L------DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
++ RN+++ ++ T K ++ + + +S+++ T
Sbjct: 290 KPYPSEQAKHVRNQIANHMIEDLRKEYTYTKVMSKGTH-----KIDGKEITVSKDLYDTV 344
Query: 301 KEIINYNTQMKEAKDKESHFIDFEKI 326
+ + + ++ + I
Sbjct: 345 PKNKDKWSLKVNKDNQVYVSYPRKFI 370
>gi|467182|gb|AAA17340.1| L308_F1_36 [Mycobacterium leprae]
Length = 228
Score = 82.3 bits (201), Expect = 9e-14, Method: Composition-based stats.
Identities = 40/178 (22%), Positives = 68/178 (38%), Gaps = 7/178 (3%)
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
++S ND A ++A L ++ + +N + LG T G+ G T+A D+ +
Sbjct: 1 MQSGNDAAHSLAMQLGGMQQALQK-INVLAAKLGGQDTRVATPSGLDGPGMSTSAYDIGL 59
Query: 173 LSWRIKTDFPQYMHYFQIKGL-----EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ + G + N N + + GA G KTG+T +G
Sbjct: 60 FYRYAWQNPSFSNIVATRTFNFPGPGDHPGYQLENDNQLLYQYPGALGGKTGYTDDAGQT 119
Query: 228 IVASAIQGDQSLIAVIL-GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
V +A + + L+AV+L G + +A LL GF + I D
Sbjct: 120 FVGAANRNGRRLMAVLLHGTRQPIAPWEQAAHLLDYGFSTAVGTQIGTLIEPDPTVAG 177
>gi|298230061|ref|ZP_06963742.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str.
Canada MDR_19F]
Length = 283
Score = 82.3 bits (201), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 83/237 (35%), Gaps = 28/237 (11%)
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAI 172
+ +EK FV M G+ +N G+ + +A D+AI
Sbjct: 1 MAGSEKDFVDMMRAKLLEWGIQDATVVNTTGLNNETLGDNIYPGSKKDEENKLSAYDVAI 60
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADGMKTGFTCASGFNI 228
++ + +PQ + + G +TN+ + G DG+KTG T +G +
Sbjct: 61 VARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDGLKTGTTDKAGESF 120
Query: 229 VASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYII------K 278
V + ++ +I V+L A + R ++SL+ T RK +
Sbjct: 121 VGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRKIVQQGDAYQDSKA 180
Query: 279 DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
E++ ++ + ++ D ++ E T++ + +
Sbjct: 181 PVQDGKEDTVTAVAPEDIYLIERVGNQSSQSVQFTPDSKAISAPLEAGTVVGHLTYE 237
>gi|261867997|ref|YP_003255919.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413329|gb|ACX82700.1| DacC protein [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 292
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/259 (21%), Positives = 102/259 (39%), Gaps = 10/259 (3%)
Query: 12 MLSNIFPFLSIAETNK-LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
ML +FP L + Y + D V+ + P+ AS+TKLMTA V K
Sbjct: 1 MLKKVFPSLFLLPAVAMAQSYVVYDFTHNKVLESSAPNTVRPIASVTKLMTANVFLEHNK 60
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ + + + + K + ++ LK+++V S N A A++ S T
Sbjct: 61 NPRCTASITD---DDYDYIKGTRTKLPKYTPISCRELLKMMLVHSDNYAAHALSRSAGMT 117
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+F+ MN ++ LG+ +T F ++ G+ H + + + + + +
Sbjct: 118 RLQFIGKMNEKARQLGMKSTCFSDSSGLSTHNVSSAMDLVKLTKYSMSKPEIKAFSNLSS 177
Query: 191 KGLEIKGKK--YPNTNW-AVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVI-LG 245
++ + NTN A KTG+ SG+N+V +++ I VI L
Sbjct: 178 TYVQAGKRSVFVKNTNKLVRDEMFSAAINKTGYIRESGYNLVFVNKVPCNRATIGVISLN 237
Query: 246 ALDRNTRNKVSA-SLLSMG 263
R+ + L G
Sbjct: 238 NSSSAYRSSFTKNKLEKYG 256
>gi|4240003|dbj|BAA74787.1| D-alanyl-D-alanine carboxypeptidase [Clostridium perfringens]
Length = 183
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 48/184 (26%), Positives = 86/184 (46%), Gaps = 8/184 (4%)
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S F+ G +T+ L L+ KS ND A+AIAE + + + F MN+ ++ LGL
Sbjct: 4 IRGSKVGFRAGEKVTMRELLFGLMYKSGNDAAIAIAEHIGGSIENFSILMNDFARMLGLK 63
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTN 204
++F + HG+ H+++A D+A+L + P + K + + Y N N
Sbjct: 64 DSNFQSPHGLDSQMHFSSAYDLAVLMS-KAMEEPFFREISGTKEVGAEKYNFTRSYSNIN 122
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
+ A+G KTG+T +G +V+S +++I V+L R + + +
Sbjct: 123 KMLWRLPNANGGKTGYTGQAGKCLVSSVDHNGRNIIIVVLNCPT---RWEATERVYEYVK 179
Query: 265 YNKT 268
N +
Sbjct: 180 ANYS 183
>gi|229017877|ref|ZP_04174760.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
gi|228743468|gb|EEL93585.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
Length = 272
Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 12/218 (5%)
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
MT Y+V L + K L + I + S T+ + L L++ N
Sbjct: 1 MTEYIVMEQLHDGKIQLDESVKIRNEVFQTETSPIQVTSKDNTTVRDLLHALLLTGNNRS 60
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF----MNAHGVVQHGHYTTARDMAILSW 175
A+A+AE + E F MN +K L LS + TTA D A ++
Sbjct: 61 ALALAEHIAGNEDNFTSLMNEKAKQLKLSQQSPFLNSTGINSEKNRQSITTAIDAAEIAA 120
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------LGADGMKTGFTCASGFN 227
++ D+P ++ + K N + DG+++ + ++
Sbjct: 121 QLIKDYPDVLNITKQTSYRFTFKDVQVFNTNKMIYSLNKNIKLKDVDGLQSSLSTNGNYS 180
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
V++A QGD I+V+L A + NT + LL GF
Sbjct: 181 FVSTANQGDTRFISVVLDANEENTAFVETKKLLQYGFE 218
>gi|171912390|ref|ZP_02927860.1| Serine-type D-Ala-D-Ala carboxypeptidase [Verrucomicrobium spinosum
DSM 4136]
Length = 325
Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 66/303 (21%), Positives = 109/303 (35%), Gaps = 42/303 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-YTLLDTNTGHVIAENYPDHPWNPASLTKL 59
MR+ A + + + A T +D + E + LTK+
Sbjct: 11 MRR---SFAKLLSVTVVACFAGASTVHAQSSVIAVDVYNKKIHVEAGGNLKRPVGGLTKM 67
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS-TFKKGSTMTLDNALKLLIVKSAND 118
TA V + + K L T T+S A + N G +TL + L ++ S N
Sbjct: 68 ATALVALDWSEATKVPLNTLATVSPEALQIAGMNPLQLVPGDQITLRDLLYASMMSSDNV 127
Query: 119 IAVAIAESLCKTE-----------KKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYT 165
A +A + + FV MN + G+ T F N HG+ Y+
Sbjct: 128 AATTLALFVGQDINYRRGRTGDPLAAFVTEMNYLAAREGMVNTKFTNPHGLENSRSVPYS 187
Query: 166 TARDMAILSWRIKTD-FPQYMHYFQIKGLEI------KGKKYPNTNWAVGTFLGADGMKT 218
TA DMA LS + ++ + + + + NTN +G + DG+KT
Sbjct: 188 TAADMARLSMYAISRAPFRFYTNQKTRNITVLRGGQPVSVPMQNTNALLGVGM-IDGIKT 246
Query: 219 GFTCASGFNIVAS-------AIQGDQ------SLIAVILGALDRNTRNKVSASLLSMGFY 265
G T SG ++ S A + + ++ V+LG+ D + LL +
Sbjct: 247 GNTPRSGGCVIVSEERRGTIAKENGREVLYRHRMVTVVLGSADP---FAETQGLLQQAWG 303
Query: 266 NKT 268
Sbjct: 304 VYD 306
>gi|320010214|gb|ADW05064.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
flavogriseus ATCC 33331]
Length = 893
Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 61/285 (21%), Positives = 111/285 (38%), Gaps = 20/285 (7%)
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTLDNA 107
AS+ K+MTAYV+ I + + A+ S + K+G T
Sbjct: 567 PVASVAKIMTAYVILQGHPITGKEDGEQIEVDAKAGEEANRPDESTAPIKEGQKYTQRQM 626
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
L+LL++ S N++A +A TEK FV+ MN +K+LG++ + + + G+ T A
Sbjct: 627 LQLLMIPSGNNVARLLARWDATTEKAFVEKMNAAAKDLGMTNSVYTDPSGLESTTRSTPA 686
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ + ++ D + + + GK N N + G G+KTG + +G N
Sbjct: 687 DQLKLAKAVMQNDVFREIVNMPQAEIPGIGKMIYNNNNILLE-PGVSGIKTGSSTPAGGN 745
Query: 228 IVASAI--QGD--QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
+V +A + +I ++GA T + L + +I+
Sbjct: 746 LVWTADTVIDGKSRRIIGAVMGADVDGTLDAKLQRAL----------QTSLALIQTAQDG 795
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
S V +V T + KD ++ ++ L
Sbjct: 796 VDSATVVK-KGQVVGYVDNGFGTRTPVVATKDLKAVGWGGLEVDL 839
>gi|326778695|ref|ZP_08237960.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
cf. griseus XylebKG-1]
gi|326659028|gb|EGE43874.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
cf. griseus XylebKG-1]
Length = 890
Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 60/343 (17%), Positives = 120/343 (34%), Gaps = 40/343 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-------------------YYTLLDTNTGHVIAE 44
L++I A++ + P + ++D G +
Sbjct: 498 LLLLIVFAIVQVMRPLPEPSLQLTAKPTYTFEGGEAKLSWPGQGQSAVMVDGV-GS-LGS 555
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----S 100
P AS+ K+MTA+V+ K IT+ + A +
Sbjct: 556 EGAQKPAPIASVAKVMTAHVILQEHPLKGDEEGETITVDQKAEDESQRPDESTAPLTKGQ 615
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
+T L+LL++ S N+ A +A +E F+ MN+ +K+LG++ + + + G+ +
Sbjct: 616 KLTQRQMLQLLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKDLGMTGSTYTDPSGLEK 675
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
T + + ++ + + + ++ K N N + G G+KTG
Sbjct: 676 TTVSTATDQLKLAQAVMRNEVFRKIVDMPEVEIKGIDGKIYNNNNLLLQ-PGVSGIKTGS 734
Query: 221 TCASGFNIVASAI--QGDQSL--IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
+ +G N++ SA + L ++G R S L + +
Sbjct: 735 STPAGGNLLWSANTKVDGKLLWIYGAVMGQQAGTGRVYDSLEL---------SLQNSLKL 785
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
IKD + S V +V T + K+ ++
Sbjct: 786 IKDAQKAATSATVVK-KGDVVGYVDNGFGGQTPVVATKNLKAV 827
>gi|182438052|ref|YP_001825771.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|178466568|dbj|BAG21088.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
subsp. griseus NBRC 13350]
Length = 914
Score = 81.6 bits (199), Expect = 1e-13, Method: Composition-based stats.
Identities = 60/343 (17%), Positives = 120/343 (34%), Gaps = 40/343 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-------------------YYTLLDTNTGHVIAE 44
L++I A++ + P + ++D G +
Sbjct: 522 LLLLIVFAIVQVMRPLPEPSLQLTAKPTYTFEGGETKLSWPGQGQSAVMVDGV-GS-LGS 579
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG----S 100
P AS+ K+MTA+V+ K IT+ + A +
Sbjct: 580 EGAQKPAPIASVAKVMTAHVILQEHPLKGDEEGETITVDQKAEDESQRPDESTAPLTKGQ 639
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
+T L+LL++ S N+ A +A +E F+ MN+ +K+LG++ + + + G+ +
Sbjct: 640 KLTQRQMLQLLMIPSGNNAARLLARWDAGSEDAFIDKMNDAAKDLGMTGSTYTDPSGLEK 699
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
T + + ++ + + + ++ K N N + G G+KTG
Sbjct: 700 TTVSTATDQLKLAQAVMRNEVFRKIVDMPEVEIKGIDGKIYNNNNLLLQ-PGVSGIKTGS 758
Query: 221 TCASGFNIVASAI--QGDQSL--IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
+ +G N++ SA + L ++G R S L + +
Sbjct: 759 STPAGGNLLWSANTKVDGKLLWIYGAVMGQQAGTGRVYDSLEL---------SLQNSLKL 809
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
IKD + S V +V T + K+ ++
Sbjct: 810 IKDAQKAATSATVVK-KGDVVGYVDNGFGGQTPVVATKNLKAV 851
>gi|227432674|ref|ZP_03914647.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227351556|gb|EEJ41809.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 444
Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/280 (16%), Positives = 89/280 (31%), Gaps = 38/280 (13%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ ++D TG ++ + AS +K++TAY V +K K +T
Sbjct: 49 QPVQLNTSATSALVVDLTTGQILGQKNSSKQVAIASQSKMLTAYGVLKSIKSGKIKWSTM 108
Query: 80 ITISKNASEYPPSNSTF-----KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ I+ + + F K G +++ ++ SAND A A+ E + +
Sbjct: 109 VPITSKSDLSKEDSHMFSHIAIKAGDKVSVRELYDVMFANSANDAAFALGEFVTPKGETT 168
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHY-----------------------------T 165
Q + + +K L LS + + N+ G V +
Sbjct: 169 QQTLESWAKELHLSGSQWYNSAGQVNENTFENEISSAPKTASNKASNQQLAMIARAILEL 228
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+ + K + N + L +G+KTG + SG
Sbjct: 229 DPSLRQLSKKLTISYHMTPNFVVTDKTDYWQLMTETMPNLSNPNQLTIEGLKTGSSPESG 288
Query: 226 FNIVASA-IQGDQSLIAVILGAL---DRNTRNKVSASLLS 261
+ I V+ G D R + S ++
Sbjct: 289 AGFTGLIKDKNGHEFITVVNGIANYMDETKRYQESLRIVD 328
>gi|116617478|ref|YP_817849.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096325|gb|ABJ61476.1| D-alanyl-D-alanine carboxypeptidase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 444
Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/280 (16%), Positives = 89/280 (31%), Gaps = 38/280 (13%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ ++D TG ++ + AS +K++TAY V +K K +T
Sbjct: 49 QPVQLNTSATSALVVDLTTGQILGQKNSSKQVAIASQSKMLTAYGVLKSIKSGKIKWSTM 108
Query: 80 ITIS-----KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ I+ + S+ K G +++ ++ SAND A A+ E + +
Sbjct: 109 VPITSKADLSKEDSHLFSHIAIKAGDKVSVRELYDVMFANSANDAAFALGEFVTPKGETT 168
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHY-----------------------------T 165
Q + + +K L LS + + N+ G V +
Sbjct: 169 QQALESWAKELHLSGSQWYNSAGQVNENAFENEISSAPKTASNKASNQQLAMIARAILEL 228
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+ + K + N + L +G+KTG + SG
Sbjct: 229 DPSLRQLSKKLTISYHMTPNFVVTDKTDYWQLMTETMPNLSNPNQLTIEGLKTGSSPESG 288
Query: 226 FNIVASA-IQGDQSLIAVILGAL---DRNTRNKVSASLLS 261
+ I V+ G D R + S ++
Sbjct: 289 AGFTGLIKDKNGHEFITVVNGIANYMDETKRYQESLRIVD 328
>gi|266625856|ref|ZP_06118791.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
gi|288862244|gb|EFC94542.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
Length = 239
Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 17/155 (10%)
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
F + MN +K LG + ++F+N G+ HYTTA DMA+++ ++P+ + +
Sbjct: 1 FAKLMNKKAKELGCTGSNFVNPSGLNDPDHYTTAYDMALIARSAL-NYPEIVEIMGTRVY 59
Query: 194 EIKG-------------KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+I K N G KTGFT + +V A + D +LI
Sbjct: 60 KIPPSKKAPEGQTISPGHKMLKKN-DSAYDPRVFGGKTGFTSLADNTLVTYAKKDDMTLI 118
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
+VIL T + LL GF +K +Y
Sbjct: 119 SVILN--GHQTHYTDTKKLLDFGFSQFESKKLADY 151
>gi|297197634|ref|ZP_06915031.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
29083]
gi|297146814|gb|EFH28363.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
29083]
Length = 223
Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 51/151 (33%), Gaps = 3/151 (1%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + + D ++G V+A + PAS K + A V L L
Sbjct: 66 VPRVPDVSALSWVVADADSGEVLAAHDAHRRLPPASTLKTLFALTVLPVLPGG---LRHT 122
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ ++ A P S+ L + ++ + AV + L M
Sbjct: 123 VGANELADIEPGSSLVGVAEGQTYQVADLWRGVFLNSGNDAVHVLAGLSGGWSTTAARMQ 182
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
++ LG T+ + G G ++A D+
Sbjct: 183 AKARALGARDTYVRSPDGYDTPGQVSSAYDL 213
>gi|289805534|ref|ZP_06536163.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 140
Score = 81.2 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ +S + Y L+D N+G V+AE D +PASL
Sbjct: 15 LTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 74
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
TK+MT+YV+ +K K T +T+ +A
Sbjct: 75 TKMMTSYVIGQAMKAGKFKETDLVTVGNDAWAT 107
>gi|297159756|gb|ADI09468.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
bingchenggensis BCW-1]
Length = 786
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 12/209 (5%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTM 102
P AS+TK+MTAYVV K + I I A + S +G T
Sbjct: 452 AQKPVPIASVTKVMTAYVVLKEHPLKVSEEGPTIKIDAQAGKESGSEDESRVEVDEGQTY 511
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
L++L++ S N+IA +A +E+ FV+ MN+ +K+LG+ T + + G
Sbjct: 512 NELQMLQMLLIPSGNNIARQLARWDSGSEEAFVKKMNDAAKDLGMKNTVYTDPSGFKATT 571
Query: 163 HYT---TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T + + +I GL+ K N N + G G+KTG
Sbjct: 572 KSTASDQLKLARAVMKSEAFRSVVATPNIRIPGLKTPDSKIYNNNNLLVK-PGVVGIKTG 630
Query: 220 FTCASGFNIVASAIQ---GDQSLI-AVIL 244
+ +G ++ A + G++ LI V+L
Sbjct: 631 SSTPAGGALMWGAEKTVDGNKRLILGVVL 659
>gi|91228812|ref|ZP_01262719.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
gi|91187617|gb|EAS73942.1| D-alanyl-D-alanine carboxypeptidase [Vibrio alginolyticus 12G01]
Length = 125
Score = 80.8 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + + A Y L+D ++G V+AE + +PASLTK+MT+
Sbjct: 15 VALSATFAQSALASPIVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTS 74
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS 87
YV+ L +TISKNA
Sbjct: 75 YVIGQELARGNISEDDDVTISKNAW 99
>gi|307260895|ref|ZP_07542581.1| hypothetical protein appser12_4660 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306869462|gb|EFN01253.1| hypothetical protein appser12_4660 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 273
Score = 80.4 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 95/242 (39%), Gaps = 9/242 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
Y + D ++ ++ AS+TKLMTA + K K + ++
Sbjct: 18 AQSYVVYDFTHDRILESRAANNVQPIASVTKLMTANIFLENNKNKNCSASISD---QDFD 74
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ + K + + D LK ++V S N A A++ S + +F+Q MN ++ LG+
Sbjct: 75 HIKGTGTKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGM 134
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+T F ++ G+ + + + + + Q + + + + + N +
Sbjct: 135 RSTRFSDSSGLSSANISSALDLVKLAKYSLNNAKIQELSNTKAAYVRVGKRNVFMQNTSA 194
Query: 208 GTFL---GADGMKTGFTCASGFNIVASAIQG-DQSLIAVI-LGALDRNTRNKVSA-SLLS 261
A KTG+ SG+N+V + + I VI L TR+ + L
Sbjct: 195 LVREELFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVISLNNRSSATRSTFTKNKLEQ 254
Query: 262 MG 263
G
Sbjct: 255 YG 256
>gi|260898942|ref|ZP_05907383.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus Peru-466]
gi|308089342|gb|EFO39037.1| serine-type D-Ala-D-Ala carboxypeptidase DacC [Vibrio
parahaemolyticus Peru-466]
Length = 123
Score = 80.4 bits (196), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 6 VIIAMAMLSNIFPF---LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
V ++ + F + A Y L+D ++G V+AE + +PASLTK+MT+
Sbjct: 15 VALSATFAQSAFASPVVVPDAPQIAAKGYVLMDYHSGKVLAEKEMNTKLSPASLTKMMTS 74
Query: 63 YVVFSFLKEKKAMLTTPITISKNAS 87
YV+ L +TISKNA
Sbjct: 75 YVIGQELARGNISEDDDVTISKNAW 99
>gi|315634259|ref|ZP_07889546.1| serine-type D-Ala-D-Ala carboxypeptidase [Aggregatibacter segnis
ATCC 33393]
gi|315476849|gb|EFU67594.1| serine-type D-Ala-D-Ala carboxypeptidase [Aggregatibacter segnis
ATCC 33393]
Length = 292
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 103/242 (42%), Gaps = 9/242 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
Y + D ++ + P AS+TKLMTA V K + + ++A
Sbjct: 18 AQSYVVYDFTHNKILESSSPHSVRPIASVTKLMTANVFLEHNKNARCTASITA---EDAD 74
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+++ + + ++ + LK ++V S N A A++ S + ++F++ MN+ ++ LG+
Sbjct: 75 HIKGTSTKLPRYTPISCNELLKAMLVHSDNYAAHALSRSAGMSRQQFIKKMNDKARALGM 134
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY--PNTNW 205
++THF ++ G+ + + + + + + + ++ + NTN
Sbjct: 135 TSTHFSDSSGLSNSNVSSVMDLVKLAKYSLNNAEIKRLSNISSTYIQTGKRNIFVKNTNK 194
Query: 206 -AVGTFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVI-LGALDRNTRNKVSA-SLLS 261
A KTG+ SG+N+V +++ I VI L + R+ + L
Sbjct: 195 LVRDEMFSAAINKTGYIRESGYNLVFVNKVPCNRATIGVISLNNISSAYRSSFTKSKLEK 254
Query: 262 MG 263
G
Sbjct: 255 YG 256
>gi|213024102|ref|ZP_03338549.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella
enterica subsp. enterica serovar Typhi str. 404ty]
Length = 77
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
+++ A + L+D +G V+AE D +PASLTK+MT+YV
Sbjct: 16 VLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYV 75
Query: 65 V 65
V
Sbjct: 76 V 76
>gi|307249643|ref|ZP_07531629.1| hypothetical protein appser4_4530 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858341|gb|EFM90411.1| hypothetical protein appser4_4530 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 273
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 95/242 (39%), Gaps = 9/242 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
Y + D ++ ++ AS+TKLMTA + K K + ++
Sbjct: 18 AQSYVVYDFTHDRILESRAANNVQPIASVTKLMTANIFLENNKNKNCSASISD---QDFD 74
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ + K + + D LK ++V S N A A++ S + +F+Q MN ++ LG+
Sbjct: 75 HIKGTGTKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGM 134
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+T F ++ G+ + + + + + Q + + + + + N +
Sbjct: 135 RSTRFSDSSGLSSANISSALDLVKLAKYSLNNAKIQELSNTKAAYVRVGKRNVFMQNTSA 194
Query: 208 GTFL---GADGMKTGFTCASGFNIVASAIQG-DQSLIAVI-LGALDRNTRNKVSA-SLLS 261
A KTG+ SG+N+V + + I VI L TR+ + L
Sbjct: 195 LVREELFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVISLNNRSSATRSTFTKNKLEQ 254
Query: 262 MG 263
G
Sbjct: 255 YG 256
>gi|153827672|ref|ZP_01980339.1| penicillin-binding protein 6 [Vibrio cholerae MZO-2]
gi|149737857|gb|EDM52762.1| penicillin-binding protein 6 [Vibrio cholerae MZO-2]
Length = 161
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 3/120 (2%)
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
MKTG+T +G+++ +SA G+ LI+V++G+ +R S LLS GF
Sbjct: 1 MKTGYTSGAGYSLASSATSGEMRLISVVMGSKSVKSREAESKQLLSYGFRFYETVTPHQK 60
Query: 276 ---IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
I NEV S + + + ++ K ++ +
Sbjct: 61 DSVIQNQRLWYGDKNEVALGSADTVYLTLPRSDVKKLNAVIQLDQNLEAPIAKGDVVGSI 120
>gi|167765525|ref|ZP_02437589.1| hypothetical protein CLOSS21_00019 [Clostridium sp. SS2/1]
gi|167712710|gb|EDS23289.1| hypothetical protein CLOSS21_00019 [Clostridium sp. SS2/1]
Length = 311
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 22/252 (8%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ L++ VI PAS TK+MTA + L+ +TI +
Sbjct: 62 EAKEVLLVNNTKNKVIVSQKVFDQAYPASTTKIMTALLTLEN-----LNLSQVVTIKHDI 116
Query: 87 SEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ KKG +T++ L LI+ SAND AVA+ E++ +E FV+ MN +K
Sbjct: 117 TFPDGAAVAIHLKKGDKITVEALLNALIIMSANDAAVALGEAVAGSEANFVKMMNKRAKE 176
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY---------MHYFQIKGLEI 195
LG + THF N +G+ HY+TA D+ ++ + + + Y KG +
Sbjct: 177 LGATNTHFANPNGLHLSDHYSTAYDLYLIFKEVAKHNEFFNIAGRSSSRIEYLGSKGEQK 236
Query: 196 KGKKYPNTNWAVGTFL-----GADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDR 249
+ GT+ G KTG T +G ++ + + I+V+L + +
Sbjct: 237 IYDMASTNQYIAGTYTLPSQVYMIGGKTGTTTQAGSCLILLTKNKDGEEFISVVLKGVTK 296
Query: 250 NTRNKVSASLLS 261
+ +LS
Sbjct: 297 SALYHTMTDILS 308
>gi|190149713|ref|YP_001968238.1| penicillin-binding protein 7 precursor [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303249783|ref|ZP_07335987.1| penicillin-binding protein 7 precursor [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303252663|ref|ZP_07338826.1| penicillin-binding protein 7 precursor [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245252|ref|ZP_07527343.1| hypothetical protein appser1_4600 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307247423|ref|ZP_07529470.1| hypothetical protein appser2_4190 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307251972|ref|ZP_07533873.1| hypothetical protein appser6_4920 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307254199|ref|ZP_07536044.1| hypothetical protein appser9_4520 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307256466|ref|ZP_07538248.1| hypothetical protein appser10_4720 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307258664|ref|ZP_07540399.1| hypothetical protein appser11_4650 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|307263022|ref|ZP_07544644.1| hypothetical protein appser13_4450 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189914844|gb|ACE61096.1| penicillin-binding protein 7 precursor [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302648631|gb|EFL78824.1| penicillin-binding protein 7 precursor [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302651350|gb|EFL81502.1| penicillin-binding protein 7 precursor [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306853896|gb|EFM86110.1| hypothetical protein appser1_4600 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306856120|gb|EFM88276.1| hypothetical protein appser2_4190 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306860664|gb|EFM92676.1| hypothetical protein appser6_4920 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306862899|gb|EFM94848.1| hypothetical protein appser9_4520 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306865096|gb|EFM96997.1| hypothetical protein appser10_4720 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306867321|gb|EFM99174.1| hypothetical protein appser11_4650 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306871648|gb|EFN03370.1| hypothetical protein appser13_4450 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 273
Score = 80.4 bits (196), Expect = 4e-13, Method: Composition-based stats.
Identities = 49/242 (20%), Positives = 95/242 (39%), Gaps = 9/242 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
Y + D ++ ++ AS+TKLMTA + K K + ++
Sbjct: 18 AQSYVVYDFTHDRILESRAANNVQPIASVTKLMTANIFLENNKNKNCSASISD---QDFD 74
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ + K + + D LK ++V S N A A++ S + +F+Q MN ++ LG+
Sbjct: 75 HIKGTGTKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGM 134
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+T F ++ G+ + + + + + Q + + + + + N +
Sbjct: 135 RSTRFSDSSGLSSANISSALDLVKLAKYSLNNAKIQELSNTKAAYVRVGKRNVFMQNTSA 194
Query: 208 GTFL---GADGMKTGFTCASGFNIVASAIQG-DQSLIAVI-LGALDRNTRNKVSA-SLLS 261
A KTG+ SG+N+V + + I VI L TR+ + L
Sbjct: 195 LVREELFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVISLNNRSSATRSTFTKNKLEQ 254
Query: 262 MG 263
G
Sbjct: 255 YG 256
>gi|311110173|ref|ZP_07711570.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
MV-22]
gi|311065327|gb|EFQ45667.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus gasseri
MV-22]
Length = 201
Score = 80.0 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 21/173 (12%)
Query: 1 MRQ-------FLVIIAMAMLSNIFPFLSIAETNK----------LPYYTLLDTNTGHVIA 43
MR+ + ++ ++ I P A + +D +G V+
Sbjct: 17 MRKYKVKWFSIISLLVCILIFWIKPITVKASSINNYHQEQVELQAKSAIAIDLKSGQVLY 76
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D AS++KL+T Y+ + KK + +K + + +
Sbjct: 77 AKNADKKLPVASMSKLITIYLTLDAINNKKLSWNQKVKPTKQIVKISNNPEYSGVPLKLN 136
Query: 104 LDNALKLLIV----KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+K L +SAN A+ + +++ +++ FV+ M N + +
Sbjct: 137 HAYTIKQLYEATLIQSANGPAMLLGQAISGSQQAFVKKMRNQLVSWNIGGGQP 189
>gi|308234036|ref|ZP_07664773.1| D-alanyl-D-alanine carboxypeptidase [Atopobium vaginae DSM 15829]
gi|328943433|ref|ZP_08240898.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae DSM
15829]
gi|327491402|gb|EGF23176.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae DSM
15829]
Length = 347
Score = 80.0 bits (195), Expect = 4e-13, Method: Composition-based stats.
Identities = 46/229 (20%), Positives = 81/229 (35%), Gaps = 11/229 (4%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
Y + D + + D PASL KLMT Y ++ + ++
Sbjct: 94 SKYRYVYDITHRKEVINDDADVACAPASLVKLMTIYTALQHIQSLDQVAPIDKETFQHLL 153
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ S + F T + L +++S + A +A + FV+ MN+ + LGL
Sbjct: 154 DENASMAGFVADEQTTYKDLLYGTLLRSGGECATNLAIHTAGSVDAFVKKMNDNAHKLGL 213
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTD-----------FPQYMHYFQIKGLEIK 196
SATH+ N G+ + A D+ + D + KG+ +K
Sbjct: 214 SATHYTNPTGLDDPNQISCAADVVKVFNACLQDKRFKEILTAQEYTSSKTNQHPKGITMK 273
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ G K+G T +G V + + I ++G
Sbjct: 274 NNILSHITPEEQNGFKILGGKSGTTDNAGLCWVTLVTKNNVDYIVCVMG 322
>gi|94267082|ref|ZP_01290721.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [delta
proteobacterium MLMS-1]
gi|93452219|gb|EAT02875.1| Peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [delta
proteobacterium MLMS-1]
Length = 209
Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 4/191 (2%)
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
++SAND AVA+AE + E+ F + M + + +G + T NA+G+ G +TARD+A+
Sbjct: 21 MRSANDAAVALAEKIAGNERAFARLMTSKVRAMGANNTTLRNANGLTAQGQQSTARDLAL 80
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ + P+ G+ +N A+ G+ G KTGFT A+ V
Sbjct: 81 ILH-RAMEHPELAQRLGTVSTNGLGQTMRTSNRALWQINGSQGGKTGFTRAAQQTYVGKF 139
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+G+ LI ++G+ L++ GF ++ + D
Sbjct: 140 QRGNHELIVALMGSTT---MWDDVRQLVNYGFQQIGNQALMAAAPVDPAFTRQPTATAAS 196
Query: 293 SEEVCTTQKEI 303
S V + +
Sbjct: 197 SLTVLSDAAKS 207
>gi|313900621|ref|ZP_07834114.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
gi|312954683|gb|EFR36358.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium sp. HGF2]
Length = 306
Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 53/244 (21%), Positives = 96/244 (39%), Gaps = 11/244 (4%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ I+ Y L+ V+ + + PASLTKLMT Y + + + +
Sbjct: 42 PIKISSELYSKNYILIRQKDSKVMLKEREEEAIAPASLTKLMTVYTALQHIDDLQKTVRI 101
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
P +I + S + F +T ++ + ++ S D + +A SL +E FV M
Sbjct: 102 PASIFPQLEKEQASMAGFLPDEEVTYEDLIYGALLPSGADACMTLAISLYGSEDAFVAEM 161
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----------SWRIKTDFPQYMHY 187
N ++ L L T F N G+ + GH ++ RD+A + T++
Sbjct: 162 NAQAEKLKLKQTRFQNCTGLDEAGHVSSVRDIAWILDEALKLPKFAEAFHATNYVMAPSN 221
Query: 188 FQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+G+ I + + G KTG+T +G + A +++ + V A
Sbjct: 222 MHPEGMTIYSTMRMTMDQNELSQDDILGGKTGYTKKAGLCLATQARIHEETWLFVSAHAS 281
Query: 248 DRNT 251
T
Sbjct: 282 GSAT 285
>gi|317498476|ref|ZP_07956770.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
5_1_63FAA]
gi|316894169|gb|EFV16357.1| D-alanyl-D-alanine carboxypeptidase [Lachnospiraceae bacterium
5_1_63FAA]
Length = 322
Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 22/252 (8%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ L++ VI PAS TK+MTA + L+ +TI +
Sbjct: 73 EAKEVLLVNNTKNKVIVSQKVFDQAYPASTTKIMTALLTLEN-----LNLSQVVTIKHDI 127
Query: 87 SEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ KKG +T++ L LI+ SAND AVA+ E++ +E FV+ MN +K
Sbjct: 128 TFPDGAAVAIHLKKGDKITVEALLNALIIMSANDAAVALGEAVAGSEANFVKMMNKRAKE 187
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY---------MHYFQIKGLEI 195
LG THF N +G+ HY+TA D+ ++ + + + Y KG +
Sbjct: 188 LGAINTHFANPNGLHLSDHYSTAYDLYLIFKEVAKHNEFFNIAGRSSSRIEYLGSKGEQK 247
Query: 196 KGKKYPNTNWAVGTFL-----GADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDR 249
+ GT+ G KTG T +G ++ + + I+V+L + +
Sbjct: 248 IYDMASTNQYIAGTYTLPSQVYMIGGKTGTTTQAGSCLILLTKNKDGEEFISVVLKGVTK 307
Query: 250 NTRNKVSASLLS 261
+ +LS
Sbjct: 308 SALYHTMTDILS 319
>gi|295102720|emb|CBL00265.1| D-alanyl-D-alanine carboxypeptidase [Faecalibacterium prausnitzii
L2-6]
Length = 451
Score = 79.6 bits (194), Expect = 6e-13, Method: Composition-based stats.
Identities = 51/375 (13%), Positives = 121/375 (32%), Gaps = 42/375 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE--------TNKLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ + + +L + + +++T+T ++ +
Sbjct: 1 MKRIVTLFLSLILLLSCLCAPASAMFDPSLFYEVQAKSAYIVNTDTNIIVYDKDSSRQVP 60
Query: 53 PASLTKLMT-AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
LTK MT A ++ ++ + P IS N+ + T T A+ +
Sbjct: 61 AGGLTKYMTIALLLTNYADQLDNTFQMPFAISDYVH--NSDNADMRSNETFTYREAVYAM 118
Query: 112 IVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
++++AN+ A+ +A SL + +V MN S+ +G + + + +A G+ T
Sbjct: 119 LLRNANEAAMGLAYSLSGGDLAGWVSQMNTLSQRIGTTGSTWTDACGLDSGNVTTAVDMY 178
Query: 171 AILSWRIKTDFPQYMH-----YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF----- 220
IL + + D + K K N N A+ G +
Sbjct: 179 LILRYLMSFDAFVDISSAPAFTMPAKEKHTKSFVLLNQNVALNKTSGGSFYRKSMQGGMC 238
Query: 221 ------TCASGFNIVASAIQGDQSLIAVILGALDRNTRN---------KVSASLLSMGFY 265
+ V+ A Q + I I+ + D + L+ F
Sbjct: 239 DVMAYKNDHGDQSYVSWANQDGSTYIFCIMQSPDTCDTYGYANRRPALYETTRLIDWVFQ 298
Query: 266 NKTDRKKIN---YIIKDFYQQNLSNEVPNISEE--VCTTQKEIINYNTQMKEAKDKESHF 320
+ + + ++ + + + + + + + + T + K +
Sbjct: 299 SFSIQPALDTDLALAEIPVKYSSDTDTLKLYPDNSMMTLLPSSGDGTVTQKYFHLPDYVC 358
Query: 321 IDFEKITLLKNKITK 335
++ ++ K
Sbjct: 359 APVQQGDVVGTVELK 373
>gi|291558993|emb|CBL37793.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SSC/2]
Length = 322
Score = 79.6 bits (194), Expect = 7e-13, Method: Composition-based stats.
Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 22/252 (8%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+ L++ VI PAS TK+MTA + L+ +TI +
Sbjct: 73 EAKEVLLVNNTKNKVIVSQKVFDQAYPASTTKIMTALLTLEN-----LNLSQVVTIKHDI 127
Query: 87 SEYPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ KKG +T++ L LI+ SAND AVA+ E++ +E FV+ MN +K
Sbjct: 128 TFPDGAAVAIHLKKGDKITVEALLNALIIMSANDAAVALGEAVAGSEANFVKMMNKRAKE 187
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY---------MHYFQIKGLEI 195
LG + THF N +G+ HY+TA D+ ++ + + + Y KG +
Sbjct: 188 LGATNTHFANPNGLHLSDHYSTAYDLYLIFKEVAKHNEFFNIAGRSSSRIEYLGSKGEQK 247
Query: 196 KGKKYPNTNWAVGTFL-----GADGMKTGFTCASGFNIVASA-IQGDQSLIAVILGALDR 249
+ GT+ G KTG T +G ++ + + I+V+L + +
Sbjct: 248 IYDMASTNQYIAGTYTLPSQVYMIGGKTGTTTQAGSCLILLTKNKDGEEFISVVLKGVTK 307
Query: 250 NTRNKVSASLLS 261
+ +LS
Sbjct: 308 SALYHTMTDILS 319
>gi|289673758|ref|ZP_06494648.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae
FF5]
Length = 151
Score = 79.3 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 57/143 (39%), Gaps = 3/143 (2%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+ ++D T V+ + PD AS+TKLMTA VV +
Sbjct: 12 AVLSRDPSNLHLASGSAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAMVVLDAKQPMDE 71
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
++ I+ + S K GS M + L + ++ S N A ++A S F
Sbjct: 72 VIPVNISQTPE---MKGVFSRVKLGSEMNRRDMLLITLMSSENRAAASLAHSYPGGYPAF 128
Query: 135 VQHMNNTSKNLGLSATHFMNAHG 157
+ MN +K LG+ T ++ G
Sbjct: 129 ILAMNAKAKALGMKHTAYVEPTG 151
>gi|215447173|ref|ZP_03433925.1| D-alanyl-D-alanine carboxypeptidase dacB2 [Mycobacterium
tuberculosis T85]
Length = 219
Score = 79.3 bits (193), Expect = 9e-13, Method: Composition-based stats.
Identities = 43/215 (20%), Positives = 81/215 (37%), Gaps = 14/215 (6%)
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
++ A V L + + ++ + K G + T L L++ S ND
Sbjct: 1 MLLALVALDE-----LDLNSTVVADVADTQAECNCVGVKPGRSYTARQLLDGLLLVSGND 55
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY--TTARDMAILSWR 176
A +A + + V MN + LG ++TH G+ G +TA D+ ++
Sbjct: 56 AANTLA-HMLGGQDVTVAKMNAKAATLGATSTHATTPSGLDGPGGSGASTAHDLVVIFRA 114
Query: 177 IKTDF---PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + + + N + + + GA G KTG+T A+ V +A
Sbjct: 115 AMANPVFAQITAEPSAMFPSDNGEQLIVNQDELLQRYPGAIGGKTGYTNAARKTFVGAAA 174
Query: 234 QGDQSLIAVILGA---LDRNTRNKVSASLLSMGFY 265
+G + L+ ++ T +A+L GF
Sbjct: 175 RGGRRLVIAMMYGLVKEGGPTYWDQAATLFDWGFA 209
>gi|213613286|ref|ZP_03371112.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
Length = 137
Score = 78.9 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ +S + Y L+D N+G V+AE D +PASL
Sbjct: 39 LTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 98
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
TK+MT+YV+ +K K T +T+ +A
Sbjct: 99 TKMMTSYVIGQAMKAGKFKETDLVTVGNDAWAT 131
>gi|329941308|ref|ZP_08290587.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
M045]
gi|329299839|gb|EGG43738.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoaurantiacus
M045]
Length = 851
Score = 78.9 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 73/362 (20%), Positives = 130/362 (35%), Gaps = 35/362 (9%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLL---DTN----TG-----HVIA-----ENYP 47
L+ I A+ ++ P A DT+ +G V+ +
Sbjct: 464 LLAIVFAVAQSMRPLPDPALDLTAQSSYAFKGSDTDIPWPSGGQAALDVLGIGSYGSSGE 523
Query: 48 DHPWNPASLTKLMTAYVVFSFLK---EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P AS+TK+MTAY++ + + A+ S G ++T
Sbjct: 524 QKPAPIASVTKVMTAYLILKNHPLKGGEGEKIKVDQPAEDQATADGESTVKVHAGDSITE 583
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
AL+ L++ SAN++A +A +EK FV MN T+K LG++ T + + G+ +
Sbjct: 584 KEALQALLIASANNVARLVARWDAGSEKAFVAKMNTTAKQLGMTNTTYTDPSGL-EKTTV 642
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
+TA D L+ D ++ + KG K+ N N VG + G G+KTG T A+
Sbjct: 643 STAVDQVKLAKAAMKDSSFRQIAAMMEYTDYKGDKHSNWNRLVG-YNGVVGIKTGTTTAA 701
Query: 225 GFNIVASAIQ---GDQSLI--AVILGALDRNTRN------KVSASLLSMGFYNKTDRKKI 273
G N+V +A++ G I AV+ S L+ + +
Sbjct: 702 GGNLVFAAVKKVGGQTRTIVGAVVGQGPGGEDNTILSGALDASDKLIRAAQASLESATIL 761
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKI 333
+ + + K + +K + + + +
Sbjct: 762 KKGTVVGAVDDGLGGRTPV--VITKDVKAVGWAGLTVKLKFAADELPHTAKAGAKVGSLT 819
Query: 334 TK 335
Sbjct: 820 VG 821
>gi|29830324|ref|NP_824958.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
MA-4680]
gi|29607435|dbj|BAC71493.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
avermitilis MA-4680]
Length = 888
Score = 78.9 bits (192), Expect = 1e-12, Method: Composition-based stats.
Identities = 55/285 (19%), Positives = 107/285 (37%), Gaps = 19/285 (6%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTL 104
P AS+ K+MTAYV+ K IT+ + S + KG T
Sbjct: 557 APKPIASVAKIMTAYVILEEHPLKGTAAGDKITVDQQAEDESKNEDESTAAMTKGQKFTE 616
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
L++L++ S N+ A +A + + FV MN +K LG++ + + + G+ +
Sbjct: 617 RQMLQMLMIPSGNNAARLLARWDSDS-ETFVGKMNAAAKKLGMTNSTYTDPSGLEKTTVS 675
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
T + + ++ + + + + N N + +G G+KTG + +
Sbjct: 676 TATDQLKLAKAVMQKEVFRSIVGMAKADIPGLKGTIYNNNDLLVKQVGVIGLKTGSSTPA 735
Query: 225 GFNIVASAIQ--GD--QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDF 280
G N+V +A + +++ +L R S L N +K I+
Sbjct: 736 GGNLVWAATKTVNGKVRTIYGAVLNQDAGTGRVWDSLQL---ALTN--SQKLIDK----- 785
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
QQ L + +V + + T + ++ + K
Sbjct: 786 VQQGLISAPVVKKGQVVGYVDDQLGGRTPVVATENMTAVGWPGLK 830
>gi|228979141|ref|ZP_04139487.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
gi|228780589|gb|EEM28810.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
Length = 129
Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 4/120 (3%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+++F +++ ++ + F + L++ N+G ++ + + P A+L
Sbjct: 4 LKKFAILLLSFFITALIVLYFYLYVNGPIIQAKSAILINANSGEIVYKKNEETPVQSATL 63
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+KLMT Y+V L ++K L + IS S T +
Sbjct: 64 SKLMTEYIVLEQLNDRKIQLDDFVQISNEVFRVETSPIQVTSNDKTTFVIYFMHCYWQGI 123
>gi|302543172|ref|ZP_07295514.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
hygroscopicus ATCC 53653]
gi|302460790|gb|EFL23883.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
himastatinicus ATCC 53653]
Length = 929
Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 57/306 (18%), Positives = 116/306 (37%), Gaps = 20/306 (6%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTM 102
AS+TK+MTAYVV K I I + + S ++ K+G +
Sbjct: 598 AQKAVPIASVTKVMTAYVVLKDHPLKAGAEGPRIEIDATAAEESGSADESRASVKEGQSF 657
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T L+LL++ S+N+IA +A + F + MN+ +K+LG+ T + + G+ +
Sbjct: 658 TQHQLLQLLLINSSNNIARLLARWDAGSLDAFTKKMNDAAKSLGMKNTTYTDPSGLKETT 717
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
T + + + ++++ + + + K N N + G G+KTG +
Sbjct: 718 KSTASDQLKLAKAAMQSEAFREVVATPNTQIPGLDGKIYNNNNLLVK-PGVIGIKTGSST 776
Query: 223 ASGFNIVASAIQ----GDQSLIAVILGALDRNTRNK-------VSASLLSMGFYNKTDRK 271
+G ++ A++ Q ++ V+L T + S L++ T
Sbjct: 777 PAGGALMWGAVRTIDGKKQRILGVVLEQRAPTTLDASLQLAQTESYKLITAAQDALTSAT 836
Query: 272 KINYIIKD-FYQQNLSNEVPNISEEVCTTQK-EIINYNTQMKEAKDKESHFIDFEKITLL 329
I L P ++ + +N + ++ + H + T++
Sbjct: 837 VIKKGDVVGQVDDGLGGTTPVVATKDLKAVGWAGLNVDIKIGDGGKTIPHTA--KAGTVV 894
Query: 330 KNKITK 335
Sbjct: 895 GEVTVG 900
>gi|46143200|ref|ZP_00204410.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 154
Score = 78.5 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 4/115 (3%)
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDF 280
+ ++ + LI+V++G R S LL GF N K + + +
Sbjct: 1 HNLVASAVNNNNMRLISVVMGVATHKGREIESKKLLQWGFANFETFKSLQANQSIVEEKV 60
Query: 281 YQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
Y N + + E+ T + + + + +++ K ++ I +
Sbjct: 61 YYGNTNKVQLGVLEDAYITLPKGRQNDVKTRYELNQKMLTAPLAKGQIVGKIIYQ 115
>gi|153595|gb|AAA26866.1| penicillin-binding protein 3 [Streptococcus pneumoniae]
Length = 210
Score = 78.5 bits (191), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 69/185 (37%), Gaps = 14/185 (7%)
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL----GADG 215
+ +A D+AI++ + +PQ + + G +TN+ + G DG
Sbjct: 26 DEENKLSAYDVAIVARNLIKKYPQVLEITKKPSSTFAGMTITSTNYMLEGMPAYRGGFDG 85
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRK 271
+KTG T +G + V + ++ +I V+L A + R ++SL+ T RK
Sbjct: 86 LKTGTTDKAGESFVGTTVEKGMRVITVVLNADHQDNNPYARFTATSSLMDYISSTFTLRK 145
Query: 272 KINYII------KDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEK 325
+ + E++ ++ + ++ D ++ E
Sbjct: 146 IVQQGDAYQDSKAPVQDGKEDTVIAVAPEDIYLIERVGNQSSQSVQFTPDSKAIPAPLEA 205
Query: 326 ITLLK 330
T++
Sbjct: 206 GTVVG 210
>gi|213029379|ref|ZP_03343826.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 141
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 4/108 (3%)
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQN 284
VASA QGD LI+V+LGA R S LL+ GF I + + + +
Sbjct: 1 VASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGD 60
Query: 285 LSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 61 KREVNLGAGDAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 108
>gi|70725304|ref|YP_252218.1| hypothetical protein SH0303 [Staphylococcus haemolyticus JCSC1435]
gi|68446028|dbj|BAE03612.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 383
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 63/342 (18%), Positives = 131/342 (38%), Gaps = 43/342 (12%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL-------------PYYTLLDTNTGHVIAENYPD 48
+ +I +++L S + P +L T+ G ++ +
Sbjct: 7 KGIGIITTISLLHTSISDASESPVTIANKEKNSSISTKYQPSGVMLTTDQGQILYNYRGN 66
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTL 104
+ +PAS++K+MT Y+ + ++ K L + I+ + S+ + K+G T T+
Sbjct: 67 NQVDPASMSKMMTLYLTYEAIENGKLKLNDKVKITNKYATMSNLPNLSSVSLKQGQTYTI 126
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---- 160
+ +K + S+N A+ + E + F MN +K+ ++ T+F+N G
Sbjct: 127 EELIKQTTLASSNAAAMILGEKVSGDNNTFTNKMNQQAKSFNMTNTNFVNPAGAQNSLLD 186
Query: 161 ----------HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW----A 206
+TA+DM +L + +PQ + ++ +G + +TN
Sbjct: 187 QYAPSKFKKQDFPKSTAKDMNLLMQALIKKYPQILQISKLTRDTQRGNTFKSTNLSLKGQ 246
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL------DRNTRNKVSASLL 260
G DG+KTG T G+NI + Q L I+ + RN++ ++
Sbjct: 247 PLYLPGTDGLKTG-TSNKGYNIALTNKQDQLRLNETIMNVKPFGDVNAKYNRNRIGNQII 305
Query: 261 SMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKE 302
+K + N + ++ + V + +
Sbjct: 306 KQYRQKYEYKKVLTEGD-HEIDGNKYHVKKDLYDVVPKDKSK 346
>gi|319653045|ref|ZP_08007149.1| hypothetical protein HMPREF1013_03764 [Bacillus sp. 2_A_57_CT2]
gi|317395264|gb|EFV75998.1| hypothetical protein HMPREF1013_03764 [Bacillus sp. 2_A_57_CT2]
Length = 101
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 1 MRQFLVIIAMAMLSN---IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++ LV I + + D+ +G V+ D PASLT
Sbjct: 1 MKKLLVFILLLFSFPTAYAAAEEPKDPAIISEAAIVTDSESGAVLYAKNADKKMYPASLT 60
Query: 58 KLMTAYVVFSFLKEKKA 74
K+ TA K
Sbjct: 61 KIATAIYAIENGDLKDI 77
>gi|195953485|ref|YP_002121775.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Hydrogenobaculum sp. Y04AAS1]
gi|195933097|gb|ACG57797.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Hydrogenobaculum sp. Y04AAS1]
Length = 407
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 72/365 (19%), Positives = 134/365 (36%), Gaps = 40/365 (10%)
Query: 1 MRQFLVIIAMAMLS----NIFPFLSIAE------------------TNKLPYYTLLDTNT 38
+++FLV++ + + +F E + Y + +
Sbjct: 15 LKRFLVLLVLGFIFYVGFQLFKGFPKPELELSLKDQQISGSFNISWPTDIRYGVIGTLQS 74
Query: 39 GHVIAENYPDH-PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP------ 91
G + P+ W AS+ K+MTAY++ IT+++
Sbjct: 75 GII--SKNPNQGQWPLASVAKIMTAYIILKDHPLPIGQDGPTITVTQKEVNEYEAFKKDG 132
Query: 92 -SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
S G +T L+ L++ SAN+ A +A + K FV MN T+++LGL T
Sbjct: 133 QSVVKVALGEKLTERQLLEGLMIPSANNFAYILARWDAGSVKAFVDKMNKTAQSLGLKDT 192
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ + G G +T +D L+ + N N+ +G
Sbjct: 193 RYEDPSG-ASAGTVSTPKDQFKLTQLAMQIPTFRHMVAMPQVNLPIAGIQYNVNYDLGKD 251
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN---KVSASLLSMGFYNK 267
G+KTG + +G N V + QG+ ++ VI GA +++ K + L+
Sbjct: 252 N-IVGVKTGSSLPAGANFVFDSKQGNIDILGVIFGASGKSSLMTALKDAIILIDTTKTQI 310
Query: 268 TDRKKINYIIKDFYQQN--LSNEVP-NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
+ K I+ + + + + E+P S++ T + + KD + E
Sbjct: 311 STEKLISKNQQIGFIKVSWMKKEIPMLASQDFSTVVYPGMKITYSLYPIKDMKFPIKSNE 370
Query: 325 KITLL 329
I L
Sbjct: 371 VIGTL 375
>gi|52424904|ref|YP_088041.1| DacC protein [Mannheimia succiniciproducens MBEL55E]
gi|52306956|gb|AAU37456.1| DacC protein [Mannheimia succiniciproducens MBEL55E]
Length = 269
Score = 78.1 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/238 (19%), Positives = 92/238 (38%), Gaps = 9/238 (3%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ D V+ P+ AS+TKLMTA V + + ++
Sbjct: 1 MVYDFTHNKVLESRSPNSILPIASVTKLMTANVFLENNRNPNCSSSITD---EDYDHIKG 57
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + K + ++ + LK ++V S N A A++ S + +F++ MN ++ LG+++T
Sbjct: 58 TRTKLPKYTPISCNELLKAMLVHSDNYAAHALSRSAGMSRAQFIKKMNQKAQQLGMNSTR 117
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA---VG 208
F ++ G+ + + + + + + + + + N
Sbjct: 118 FSDSSGLSSSNVSSPMDLVKLAKYSLDKQLIKTLSNTRATYIRAGRHNVFMQNTNKLVRE 177
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQG-DQSLIAVI-LGALDRNTRNKVSA-SLLSMG 263
A KTG+ SG+N+V ++S I VI L R+ + L G
Sbjct: 178 EMFDAAINKTGYIRESGYNLVFVNKHQCNRSTIGVISLNNASSAYRSNFTKHKLEEYG 235
>gi|302552148|ref|ZP_07304490.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
DSM 40736]
gi|302469766|gb|EFL32859.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces viridochromogenes
DSM 40736]
Length = 930
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 56/205 (27%), Positives = 93/205 (45%), Gaps = 10/205 (4%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTM 102
P AS+ K+MTAY++ K I I + A + S KG +
Sbjct: 601 EQKPVPIASVAKVMTAYLILREHPLKSGAPGPKIEIDQAAEDQSDAGQESTVDVTKGDKI 660
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T AL+ +++ SAN+IA +A +EK FVQ MN+ +K+LG+ T + + G+
Sbjct: 661 TQREALESILIASANNIARLLARWDAGSEKSFVQKMNDAAKDLGMKNTTYTDPSGLNNTT 720
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+TA D L+ + ++ KG K+ N N VG + G+KTG T
Sbjct: 721 -VSTAVDQVKLAKAAMQQPAFREVAAMMSYVDYKGTKHDNWNRLVG-YNDVTGIKTGTTT 778
Query: 223 ASGFNIVASAIQG----DQSLIAVI 243
++ N+V +A + + +I +
Sbjct: 779 SALGNLVFAAKKDVDGETRRIIGAV 803
>gi|126207904|ref|YP_001053129.1| penicillin-binding protein 7 precursor [Actinobacillus
pleuropneumoniae L20]
gi|126096696|gb|ABN73524.1| penicillin-binding protein 7 precursor [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 259
Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats.
Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 8/230 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
Y + D ++ ++ AS+TKLMTA + K K + ++
Sbjct: 18 AQSYVVYDFTHDRILESRAANNVQPIASVTKLMTANIFLENNKNKNCSASISD---QDFD 74
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ + K + + D LK ++V S N A A++ S + +F+Q MN ++ LG+
Sbjct: 75 HIKGTGTKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGM 134
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+T F ++ G+ + + + + + Q + + + + + N +
Sbjct: 135 RSTRFSDSSGLSSANISSALDLVKLAKYSLNNAKIQELSNTKAAYVRVGKRNVFMQNTSA 194
Query: 208 GTFL---GADGMKTGFTCASGFNIVASAIQG-DQSLIAVI-LGALDRNTR 252
A KTG+ SG+N+V + + I VI L TR
Sbjct: 195 LVREELFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVISLNNRSSATR 244
>gi|317406568|gb|EFV86761.1| hypothetical protein HMPREF0005_04939 [Achromobacter xylosoxidans
C54]
Length = 277
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 51/239 (21%), Positives = 88/239 (36%), Gaps = 5/239 (2%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+++ + ++ E + + +LD+ +G + + ASLTKL+TA VV
Sbjct: 37 LMARMPGVQALIEASGASHVLVLDSRSGATLFGRAENDAVPIASLTKLVTAMVVLDTSP- 95
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
I + + S G+++TLD LKL ++ S N A A+A + E
Sbjct: 96 -DLSRRIRIDERDALATASGAASPLPVGASVTLDTLLKLALMASDNRAAHALARAYPGGE 154
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR-DMAILSWRIKTDFPQYMHYFQI 190
F + + + L L T +A G+ + A I + +
Sbjct: 155 TAFAEALQRKAAALRLEHTTLQDATGLSNANRASAADIGRIIDAAAAYPQIARDTTTLAD 214
Query: 191 KGLEIKGK-KYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ Y NTN VG KTG + +G + D+ L V+L
Sbjct: 215 TVEAAGSRLSYRNTNPLVGARDWDVRLSKTGNSTEAGRCLAMRLHIDDRDLTLVLLNGR 273
>gi|289450082|ref|YP_003474721.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridiales genomosp.
BVAB3 str. UPII9-5]
gi|289184629|gb|ADC91054.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 748
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 57/319 (17%), Positives = 111/319 (34%), Gaps = 23/319 (7%)
Query: 37 NTGHV--IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
N G + + + PA++TKL + + + L ++ T I + +
Sbjct: 156 NNGQIQSVFTKKEHEKFAPATMTKLFSVLLAYDKLNQRLNEETDIIPSDVDGLAEVGARI 215
Query: 95 T-FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
FK G ++ + + +++S D A+A E FV+ MN +K LG++ +HF
Sbjct: 216 IGFKVGESLPIADLFLGAVMESGADAIRALARLSYGDENDFVKAMNEKAKALGMNDSHFS 275
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT---NWAVGTF 210
N G+ G T+ DMAI+ T K +P N +
Sbjct: 276 NCTGLSADGDSTSVHDMAIVMALCATRPQLVQMLCTAGYTTQKTDFHPYGIALNSILFND 335
Query: 211 L------------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+ G + G++ FN++ A G + L+ V GA R +
Sbjct: 336 IEQAKAQSEGRKVYIQGGRPGWSPDGLFNLMTFAHVGKKLLVVVSAGADQAQARFADHDN 395
Query: 259 LLSMGFYNKTDRKKINY-----IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
+ + + D + IK ++ E+ N + + ++ +
Sbjct: 396 IYNQLIGAQHDVTVLTPHQPVGEIKLINGRSDKVELANGPDSFTASLPVMLFAEDVDIKL 455
Query: 314 KDKESHFIDFEKITLLKNK 332
+ E +K +
Sbjct: 456 QVPERIDAPVKKGQEIGQI 474
>gi|145483651|ref|XP_001427848.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394931|emb|CAK60450.1| unnamed protein product [Paramecium tetraurelia]
Length = 472
Score = 77.7 bits (189), Expect = 3e-12, Method: Composition-based stats.
Identities = 55/260 (21%), Positives = 96/260 (36%), Gaps = 46/260 (17%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT-PITIS 83
+ + D +I++ + ASLTK+MT Y+ LK+ + ++
Sbjct: 204 NVSAKSFIVYDCLENRIISQRKCNRRMEIASLTKIMTFYITMVILKQLNLKSQDIKVKVT 263
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES----------------- 126
K ASE + + K +T+ + L L++ S ND A IA++
Sbjct: 264 KKASETIGTTAELKYNDILTIQDLLYGLMLPSGNDAATLIAQAIGTIILFYEADKRLDSK 323
Query: 127 --------------------LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ F+ MN+ S +G T F HG+ +Y++
Sbjct: 324 LIDIEQMSAEGHYYNVELKSHQCPIEIFISKMNHYSTLMGQQNTQFACVHGLANEDNYSS 383
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
D+ +LS FQ K ++ NTN G G+KTG T ++G
Sbjct: 384 CHDIVLLSLECM-----KYDTFQQPLYNQKSYEWKNTNKL--LDKGFFGIKTGVTDSAGP 436
Query: 227 NIVASAIQGDQS-LIAVILG 245
+ ++ + I V+L
Sbjct: 437 CLASAYRSNEMEYYIIVVLN 456
>gi|295838237|ref|ZP_06825170.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB74]
gi|197698211|gb|EDY45144.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB74]
Length = 1017
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 105/287 (36%), Gaps = 23/287 (8%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKK------AMLTTPITISKNASEYPPSNSTFKKGS 100
P AS+ K+MTAY+V KK + S S G
Sbjct: 684 AQKPVPIASVAKVMTAYLVLRDHPVKKGTDGASITMDQKAEDDAGLSAQNESTVPVHAGQ 743
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
++ A++ +++ SAN+IA +A +EK+FV MN + +LG+ T + + G+
Sbjct: 744 KLSQREAIEAIMLASANNIARQLARWDAGSEKEFVTKMNEAANDLGMRNTTYTDPSGL-N 802
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA D L D + G N N V G+KTG
Sbjct: 803 KTTVSTAEDQVRLGKVAMKDPLFREVVRMPSYEDSNGTTQTNWNRLVPMNNTV-GIKTGT 861
Query: 221 TCASGFNIVASAIQG----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
T A+G N++ +A + ++++ +L N + L+ G
Sbjct: 862 TTAAGGNLLYAATKEVGGTTRTIVGAVLAQPPAPEDNSILTGALNAG-----------KA 910
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + Q L E +V T + + T + AKD +
Sbjct: 911 LIEAAQGTLVAEKVVKKGDVVGTVDDGLGGTTPVVAAKDLTAVGWPG 957
>gi|289767530|ref|ZP_06526908.1| LOW QUALITY PROTEIN: D-alanyl-D-alanine carboxypeptidase
[Streptomyces lividans TK24]
gi|289697729|gb|EFD65158.1| LOW QUALITY PROTEIN: D-alanyl-D-alanine carboxypeptidase
[Streptomyces lividans TK24]
Length = 378
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 9/161 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK--- 72
P + + D TG V+A N PAS K + A V L
Sbjct: 47 PHPAAPRVPEVSALSWVVADAGTGDVLAANDAHRELPPASTLKTLFALTVLPALPGGIRH 106
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ I S+ + L + ++ + AV + SL
Sbjct: 107 EVGPEDLSGIGP------GSSLVGVVEGQTYRVSDLWNGVFLNSGNDAVHVLASLTGGWS 160
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
M ++ LG TH + G G ++A D+A+
Sbjct: 161 ATAARMQAEARALGARDTHVRSPDGYDAPGQVSSAYDLAVF 201
>gi|256783646|ref|ZP_05522077.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
Length = 444
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 50/161 (31%), Gaps = 9/161 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK--- 72
P + + D TG V+A N PAS K + A V L
Sbjct: 37 PHPAAPRVPEVSALSWVVADAGTGDVLAANDAHRELPPASTLKTLFALTVLPALPGGIRH 96
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ I S+ + L + ++ + AV + SL
Sbjct: 97 EVGPEDLSGIGP------GSSLVGVVEGQTYRVSDLWNGVFLNSGNDAVHVLASLTGGWS 150
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
M ++ LG TH + G G ++A D+A+
Sbjct: 151 ATAARMQAEARALGARDTHVRSPDGYDAPGQVSSAYDLAVF 191
>gi|118387709|ref|XP_001026957.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila]
gi|89308727|gb|EAS06715.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila SB210]
Length = 805
Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 47/291 (16%), Positives = 100/291 (34%), Gaps = 37/291 (12%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT- 77
+ + +++ D + +I ASLTKLMT YV + + + +
Sbjct: 507 QIVPPKEVTAQSWSVFDFESNSLIDGKQCYVQREVASLTKLMTFYVAYKLFESLQLDIKL 566
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK---- 133
+ +++ ++ ++ K + +++ + L++ S ND A IA +
Sbjct: 567 ILLQVTECCTQIEGTSGKLVKDTWLSVLDLFHGLLLPSGNDCAELIAIKIGAMLDMDQNK 626
Query: 134 -------------------------FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
F+ MN K++G+ +T F N G+ + +TA
Sbjct: 627 QLNPQMDMYQLNSELDKRASQAKMIFIVKMNEFCKDIGMHSTFFSNVTGLPDSNNVSTAY 686
Query: 169 DMAILSWRIKTDFPQYMHYFQ-IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
D+ + + + + + + + N G G+KTG T ++G
Sbjct: 687 DIECMQIPVFRQIVRKQEHIADVYDNQSEKSDKIWFNTNKLLNNGFCGIKTGITQSAGPC 746
Query: 228 IVASAIQGDQS------LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
+ + D +I ++L R + S L + K
Sbjct: 747 LASFIKIKDSETGIKKQIIIILLDCYTVEDRWEDSYLLAKWAIKAVQNNKL 797
>gi|291519269|emb|CBK74490.1| D-alanyl-D-alanine carboxypeptidase [Butyrivibrio fibrisolvens
16/4]
Length = 376
Score = 76.6 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 54/241 (22%), Positives = 86/241 (35%), Gaps = 18/241 (7%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
Y L++ T +IA PAS+TK++T L + +S
Sbjct: 122 DVVSEYGILINNKTKDIIASRNATERIVPASMTKVLTVLTA--ANHITAEQLDDKVILSH 179
Query: 85 NASEYP----PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
A +Y S S F + +T+ + I+ S D A +A + FV+ MN
Sbjct: 180 EAVDYSYAGGGSTSGFVEDEEVTVKDLFYGTILPSGGDAAAQLAIYVAGDIDSFVKMMNE 239
Query: 141 TSKNLGLSAT-HFMNAHGVVQHGHYTTARDMAILSWRI----KTDFPQYMHYFQIKGLEI 195
+K LG+S T HF N G HY+T D+AI+ + +
Sbjct: 240 QAKELGISETSHFTNPVGFHNKEHYSTPYDIAIIMMAALDNDICKEVISTKVYNSTATNV 299
Query: 196 KGKKYPNTNWAVGTFLG------ADGMKTGFTCASGFNIVASAIQG-DQSLIAVILGALD 248
+ +NW + +G KTG+ SG V++ I I +
Sbjct: 300 NPEGITISNWFLRRIEDKEFGGEIEGAKTGYVDESGSCAVSAMISNSGTEYICCTAKSSS 359
Query: 249 R 249
Sbjct: 360 S 360
>gi|50954852|ref|YP_062140.1| D-alanyl-D-alanine endopeptidase [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951334|gb|AAT89035.1| D-alanyl-D-alanine endopeptidase [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 394
Score = 76.6 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 59/280 (21%), Positives = 103/280 (36%), Gaps = 19/280 (6%)
Query: 47 PDHPWNPASLTKLMTAYVVFSF------LKEKKAMLTTPI-TISKNASEYPPSNSTFKKG 99
D AS+TK +TA VV + + T I S + K G
Sbjct: 67 SDASLPIASVTKAITALVVLDKKPLSGSEQGPEISFTQKDVDIWNQVVGEGGSWAPVKAG 126
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
++MT AL +++ SAN+ A+++A + +V N+ G S T + G+
Sbjct: 127 TSMTEKEALTAMLLPSANNYAISLANWAFGSTGAYVSAANDWLGKKGFSGTKITSPDGL- 185
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
G+ +T +D+ + + + NTN +G G DG+KTG
Sbjct: 186 DPGNVSTTKDLIGIGKLVLDSPALSSIVSKKTATLPGAGDQDNTNSLLGV-EGVDGIKTG 244
Query: 220 FTCASGFNIVASAI----QGDQSLIAVILGALDRNTRNKVSASLLS---MGFYNKTDRK- 271
T +GF ++ SA + ++ +LGA R+T LL GF+ K
Sbjct: 245 NTDEAGFCLLFSAEVPVGKAKVRVVGAVLGADSRDTLWANVKELLQSMRNGFHEVEAVKA 304
Query: 272 --KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
+ + + V + ++ T+
Sbjct: 305 GQVFGSYDTPWGSSSDLVATAGKTFVVWSDTPLRVHLETR 344
>gi|229824756|ref|ZP_04450825.1| hypothetical protein GCWU000182_00104 [Abiotrophia defectiva ATCC
49176]
gi|229791085|gb|EEP27199.1| hypothetical protein GCWU000182_00104 [Abiotrophia defectiva ATCC
49176]
Length = 329
Score = 76.6 bits (186), Expect = 5e-12, Method: Composition-based stats.
Identities = 61/250 (24%), Positives = 98/250 (39%), Gaps = 24/250 (9%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI- 82
+ + ++ I PASLTK+MTAYVVF+ K L + I
Sbjct: 72 PSFNAKSVIV--SSDEEAIYSKNCFKKMYPASLTKMMTAYVVFAKEK----NLDRTVKID 125
Query: 83 --SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
S SE G +T+ L +V SAND A A+A ++ +E+KF MN
Sbjct: 126 GESIKISEPLAKKIRLMDGDEVTIRQLLNAALVTSANDAAKALAVAVAGSEEKFAALMNE 185
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD----FPQYMHYFQIKGLEIK 196
+K +G + + F+N+ G+ HY+T D+ ++ + + + +K
Sbjct: 186 EAKKIGATHSRFVNSTGLHDTAHYSTLYDLYLIFNELLKNSEFVKIVNQGSYTMKHKNSA 245
Query: 197 GKKYPNTNWAVGTF----------LGADGMKTGFTCASGFNIVASAI-QGDQSLIAVILG 245
G + T + + G KTG T +G I+ S D+ I +L
Sbjct: 246 GVEVVKTMSSTNQYLAGVMKVPDGYTVIGGKTGTTDEAGSCILMSFKSSSDKKYIVGVLK 305
Query: 246 ALDRNTRNKV 255
A D
Sbjct: 306 ASDALNLYAQ 315
>gi|167947195|ref|ZP_02534269.1| D-alanyl-D-alanine carboxypeptidase [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 66
Score = 76.2 bits (185), Expect = 7e-12, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 28/58 (48%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ Y LLD +G ++AE+ PASLTK+MTAY VF L+ +
Sbjct: 2 PIPSPPKVAASGYLLLDFYSGKILAESNASQRLEPASLTKIMTAYAVFRELQGGQHQP 59
>gi|302535014|ref|ZP_07287356.1| predicted protein [Streptomyces sp. C]
gi|302443909|gb|EFL15725.1| predicted protein [Streptomyces sp. C]
Length = 879
Score = 75.8 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 71/365 (19%), Positives = 131/365 (35%), Gaps = 36/365 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY------------------YTLLDTNTGHVIAEN 45
L+II +A++ + P + ++ G + +
Sbjct: 501 LLLIIVIAVVQLVRPLPAPKLKLTAKATYTFPGGAPNLPWPTEGQASMAAAGLGTI-GSS 559
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS--------KNASEYPPSNSTFK 97
P AS+TK MTAY++ KK I + K+ S+ + +T K
Sbjct: 560 GEQKPVPIASVTKSMTAYIIMRDHPFKKGEKGAMIDVDKTAETEGQKDKSDNESTLNTVK 619
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+G ++ +A+ L++ SAN+IA +A +++ FV+ MN+T+K LG++ T + + G
Sbjct: 620 EGEKISEYDAIAALMIPSANNIARLLARWDSGSQEAFVKKMNDTAKELGMTNTTYTDPSG 679
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
+ +TA D L +I + GK + N N V G+K
Sbjct: 680 LDATT-VSTAEDQVKLGLKIVEIPALVDITRMPAWTDQTGKVWQNWNRLVPFNDS-LGIK 737
Query: 218 TGFTCASGFNIVASAIQG----DQSLIAVILGALDR---NTRNKVSASLLSMGFYNKTDR 270
TG T +G N++ +A + +Q L+ +LG +T S SLL
Sbjct: 738 TGTTTKAGGNLLFAAQKKVGDTNQLLVGAVLGQHKPPIIDTVIAQSRSLLIATQKEVQGA 797
Query: 271 KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ Y + + + +K + + T +
Sbjct: 798 PVVKKGQVVGYVDDGLGGHTPVVATADVQAVGWSSLTVDLKLGDGGTAIPESAKAGTQVG 857
Query: 331 NKITK 335
Sbjct: 858 VLTVG 862
>gi|169839592|ref|ZP_02872780.1| D-alanyl-D-alanine carboxypeptidase [candidate division TM7
single-cell isolate TM7a]
Length = 203
Score = 75.8 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 6/196 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
++ ++++MA L+ + E L+ G++I E+ AS+TK+M
Sbjct: 9 IKSKKIVLSMAFLAMSAFSFADGENYHDYKALLIGDVNGNIIKEDNSLAVRPLASVTKIM 68
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T+ + +K + +T+S A+ P G T+ + LK I+KS+N+ A
Sbjct: 69 TSILTLDKIKSGQISYDDKVTVSSKAASV-PYGVKLTAGKQYTVRDLLKATIIKSSNNAA 127
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT-----ARDMAILSW 175
A+AE + FV+ MN +++ GL + + + +G+ + ARD+ L+
Sbjct: 128 YALAEYVGGDVPSFVRSMNEKARSYGLDSLRYCSPNGLPPSYTGSCMDQGNARDLYKLAQ 187
Query: 176 RIKTDFPQYMHYFQIK 191
D+ Y+++ +IK
Sbjct: 188 ITLKDYSDYLNFSKIK 203
>gi|311897918|dbj|BAJ30326.1| putative peptidase S11 family protein [Kitasatospora setae KM-6054]
Length = 740
Score = 75.8 bits (184), Expect = 8e-12, Method: Composition-based stats.
Identities = 49/218 (22%), Positives = 98/218 (44%), Gaps = 11/218 (5%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS----NSTFK 97
+ + + P AS+TK+M AY++ KK +T+ K A++ + T K
Sbjct: 407 LGGSGEEKPVPIASVTKVMNAYLILQAHPLKKGESGPTLTVDKQAAQESGNADESTVTLK 466
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+G ++ AL++L++ SAN++A +A +E++FV+ MN T+ LG+ T + + G
Sbjct: 467 EGQQLSEYEALEMLMLPSANNVARLLARWDSGSEEEFVKKMNATAAQLGMPNTTYADPAG 526
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
+ T + + + + G++ NTN +G G G+K
Sbjct: 527 YDNNTKSTAKDQLKLAEK--VMQLEIFKQIVAEPDTKFNGQRVFNTNALLGKN-GNIGVK 583
Query: 218 TGFTCASGFNIVASAIQG----DQSLIAVILGALDRNT 251
TG + + ++ +A++ + ++ V LG
Sbjct: 584 TGSSTPAQSCLMWAAVKEIGGVQRMILGVTLGQPQTKE 621
>gi|333026337|ref|ZP_08454401.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
Tu6071]
gi|332746189|gb|EGJ76630.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces sp.
Tu6071]
Length = 858
Score = 75.8 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 106/287 (36%), Gaps = 23/287 (8%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKK------AMLTTPITISKNASEYPPSNSTFKKGS 100
P AS+ K+MTAY+V KK + S S + G
Sbjct: 525 AQKPVPIASVAKVMTAYLVLRDHPVKKGGDGASITMDQKAEDDAGLSAQNESTVDVRAGQ 584
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
++ A++ +++ SAN+IA +A +EK FV MN + LG+ T + + G+
Sbjct: 585 KLSQKEAIEAIMLASANNIARQLARWDAGSEKDFVAKMNKAADELGMKNTTYTDPSGL-N 643
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA D L D ++ GK N N V G+KTG
Sbjct: 644 KTTVSTAEDQVKLGKVAMKDPLFREVVRMPAYVDSNGKTQTNWNRLVPMNNTV-GIKTGT 702
Query: 221 TCASGFNIVASAIQG----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
T A+G N++ +A + ++++ +L N + L+ G
Sbjct: 703 TTAAGGNLLYAATKEVGGTTRTIVGAVLAQPPAPEDNSILTGALNAG-----------KA 751
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + Q L E +V + + + T + AKD +
Sbjct: 752 LIEAAQGTLVAEKVVKKGDVVGSVDDGLGGTTPVVAAKDLTAVGWPG 798
>gi|318056957|ref|ZP_07975680.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actG]
Length = 886
Score = 75.8 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 106/287 (36%), Gaps = 23/287 (8%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKK------AMLTTPITISKNASEYPPSNSTFKKGS 100
P AS+ K+MTAY+V KK + S S + G
Sbjct: 553 AQKPVPIASVAKVMTAYLVLRDHPVKKGGDGASITMDQKAEDDAGLSAQNESTVDVRAGQ 612
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
++ A++ +++ SAN+IA +A +EK FV MN + LG+ T + + G+
Sbjct: 613 KLSQKEAIEAIMLASANNIARQLARWDAGSEKDFVAKMNKAADELGMKNTTYTDPSGL-N 671
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA D L D ++ GK N N V G+KTG
Sbjct: 672 KTTVSTAEDQVKLGKVAMKDPLFREVVRMPAYVDSNGKTQTNWNRLVPMNNTV-GIKTGT 730
Query: 221 TCASGFNIVASAIQG----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
T A+G N++ +A + ++++ +L N + L+ G
Sbjct: 731 TTAAGGNLLYAATKEVGGTTRTIVGAVLAQPPAPEDNSILTGALNAG-----------KA 779
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + Q L E +V + + + T + AKD +
Sbjct: 780 LIEAAQGTLVAEKVVKKGDVVGSVDDGLGGTTPVVAAKDLTAVGWPG 826
>gi|238059325|ref|ZP_04604034.1| serine-type D-Ala-D-Ala carboxypeptidase [Micromonospora sp. ATCC
39149]
gi|237881136|gb|EEP69964.1| serine-type D-Ala-D-Ala carboxypeptidase [Micromonospora sp. ATCC
39149]
Length = 274
Score = 75.8 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFP-------QYMHYFQIKGLEIKGKKYPNTNWA 206
+ G+ G +T+A D+A+++ D + L +G + N N
Sbjct: 77 DPSGLDDPGQFTSAYDLALIARVCFADPTFRRYALTEQARIPAQPALRRQGFQIQNENQL 136
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVSASLLSMGFY 265
+ + GA G KTGFT + V +A G + L+ +LGA R R + A+LL GF
Sbjct: 137 IYRYPGALGGKTGFTDYARHTYVGAAQCGGRRLVVTLLGAEPRPMRGWEQGAALLDWGFS 196
>gi|46203560|ref|ZP_00051352.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Magnetospirillum
magnetotacticum MS-1]
Length = 110
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ + +A L A +++ ++G V+ PW PAS+TKLMT
Sbjct: 8 RLIGTLAALGLMAGTATAVTAPI------LVVEADSGKVLYSQGATDPWYPASITKLMTT 61
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
YV +++ K L T +TIS A+ PPS FK G+ +TLDNALK
Sbjct: 62 YVALDMVRQGKISLDTLLTISPAAAAEPPSKMGFKPGTQITLDNALK 108
>gi|322514766|ref|ZP_08067790.1| serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus ureae ATCC
25976]
gi|322119262|gb|EFX91390.1| serine-type D-Ala-D-Ala carboxypeptidase [Actinobacillus ureae ATCC
25976]
Length = 198
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 78/203 (38%), Gaps = 14/203 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++FL + + +I Y + D ++ ++ AS+TKLMT
Sbjct: 7 KKFLSVFFLFPTLSI-----------AQSYVVYDFTHDKILESRSANNVQPIASVTKLMT 55
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A V K K + ++ + + K +++ LK ++V S N A
Sbjct: 56 ANVFLENNKNKNCSASISD---EDFDYIKGTGTKLPKYTSIACSELLKAMLVHSDNYAAH 112
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A++ S + +F+Q MN ++ LG+ +T F ++ G+ + + + + +
Sbjct: 113 ALSRSAGMSRSQFIQKMNQKAQQLGMRSTRFSDSSGLSSTNISSAMDLVKLAKYSLNNAK 172
Query: 182 PQYMHYFQIKGLEIKGKKYPNTN 204
Q + + + + N
Sbjct: 173 IQELSNTKAAYIRAGKRNVFMQN 195
>gi|55822069|ref|YP_140510.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
thermophilus CNRZ1066]
gi|55738054|gb|AAV61695.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
thermophilus CNRZ1066]
Length = 131
Score = 75.4 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 32/83 (38%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
++ ++ + ++ TG ++ E P S+TKL+TAY+
Sbjct: 3 FLLCLGSVAPTFAADKKKGFDASAKHAIAVEATTGKILYEKDATTPTGIGSITKLLTAYM 62
Query: 65 VFSFLKEKKAMLTTPITISKNAS 87
V+ + + + T + IS
Sbjct: 63 VYKAVDQGELKWNTKVDISDYPF 85
>gi|318080587|ref|ZP_07987919.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SA3_actF]
Length = 409
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 62/287 (21%), Positives = 106/287 (36%), Gaps = 23/287 (8%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKK------AMLTTPITISKNASEYPPSNSTFKKGS 100
P AS+ K+MTAY+V KK + S S + G
Sbjct: 76 AQKPVPIASVAKVMTAYLVLRDHPVKKGGDGASITMDQKAEDDAGLSAQNESTVDVRAGQ 135
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
++ A++ +++ SAN+IA +A +EK FV MN + LG+ T + + G+
Sbjct: 136 KLSQKEAIEAIMLASANNIARQLARWDAGSEKDFVAKMNKAADELGMKNTTYTDPSGL-N 194
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA D L D ++ GK N N V G+KTG
Sbjct: 195 KTTVSTAEDQVKLGKVAMKDPLFREVVRMPAYVDSNGKTQTNWNRLVPMNNTV-GIKTGT 253
Query: 221 TCASGFNIVASAIQG----DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
T A+G N++ +A + ++++ +L N + L+ G
Sbjct: 254 TTAAGGNLLYAATKEVGGTTRTIVGAVLAQPPAPEDNSILTGALNAG-----------KA 302
Query: 277 IKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ + Q L E +V + + + T + AKD +
Sbjct: 303 LIEAAQGTLVAEKVVKKGDVVGSVDDGLGGTTPVVAAKDLTAVGWPG 349
>gi|238925895|ref|YP_002939413.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
33656]
gi|238877572|gb|ACR77279.1| serine-type D-Ala-D-Ala carboxypeptidase [Eubacterium rectale ATCC
33656]
gi|291522651|emb|CBK80944.1| D-alanyl-D-alanine carboxypeptidase [Coprococcus catus GD/7]
Length = 318
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 23/257 (8%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
++ L+D + + + P PASL KL + ++ I
Sbjct: 55 PDSYNAKSLILVDCSDDEIFVSKNENEPQIPASLAKLFVIEYASTLADLDSIVVADYGAI 114
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-----------LCKTE 131
S P S+ K L N ++V S ND A +A+ +
Sbjct: 115 S---LTKPGSSVAQIKEKEYFLHNLFAAMLVPSGNDAAYVVADYCGGLLSPQAESCQERV 171
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW---RIKTDFPQYMHYF 188
+ F++++N + G T + G TT ++ + +
Sbjct: 172 RIFMENLNLHLQQQGYLDTVLYDPSGFDMEALTTTLDLKEVVYRLLEYSWFREIVSQNTY 231
Query: 189 QIKGLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + + NTN G+KTG + + +N++ Q + +
Sbjct: 232 TATLPDGSTQIWQNTNAFLDPTSEYYNENVCGIKTG-SLSDDYNLIVLYQQHGKEFLICS 290
Query: 244 LGALDRNTRNKVSASLL 260
LG+ ++R +L
Sbjct: 291 LGSQSDSSRYDDVNFIL 307
>gi|302560107|ref|ZP_07312449.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
Tu4000]
gi|302477725|gb|EFL40818.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
Tu4000]
Length = 471
Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 10/205 (4%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTM 102
P AS+ K+MTAY++ K I + + A + S G +
Sbjct: 142 EQKPVPIASVAKVMTAYLILRDHPLKSGADGPTIDVDQTAEKQSSAGDESTVNVTAGDKI 201
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ AL+ +++ SAN++A +A +EK FV+ MN +K+LG++ T + + G+
Sbjct: 202 SQREALEAILIASANNVARLVARWDAGSEKAFVEKMNEAAKDLGMTDTTYTDPSGLNNTT 261
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+TA D L+ ++ ++ KG K+ N N VG G+KTG T
Sbjct: 262 -VSTAVDQVKLAKAAMEQPAFREVAAMMEYIDYKGVKHGNWNRLVGHNN-VVGIKTGTTT 319
Query: 223 ASGFNIVASAIQG----DQSLIAVI 243
++ N+ +A + + +I +
Sbjct: 320 SALGNLSFAAKKDVDGETRRIIGAV 344
>gi|283769461|ref|ZP_06342357.1| serine-type D-Ala-D-Ala carboxypeptidase [Bulleidia extructa W1219]
gi|283103729|gb|EFC05115.1| serine-type D-Ala-D-Ala carboxypeptidase [Bulleidia extructa W1219]
Length = 311
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 40/260 (15%), Positives = 87/260 (33%), Gaps = 33/260 (12%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
Y ++D ++ + PASLTKL +VV + + L I ++
Sbjct: 56 SAKSYAVMDLTNHKILFSKNSYESYVPASLTKL---FVVDYAQQFFQ--LDDYIHANRET 110
Query: 87 SEY--PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-----------LCKTEKK 133
+ S++ K + + +++ S ND A +A++ + + +
Sbjct: 111 LKMVKKGSSTAHLKSTDYRFKSLAAAMLIPSGNDAAYVLADAIGAKINPKAVDIQQRMEA 170
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP----------- 182
F + T ++ G T +D+ +S R+
Sbjct: 171 FKKGFQEYLNKHQFLGTSIADSSG-YDFKAKTNIQDLIKVSERLLQKDWIRDIISSQSYT 229
Query: 183 -QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
Y++ + + N N GMKTG + + FN++ + + +
Sbjct: 230 ITYIYPKKQTQTWYNTNDFLNPNSEFY-DKRVKGMKTG-SLGNHFNLITLLEKNKKEYLI 287
Query: 242 VILGALDRNTRNKVSASLLS 261
++L + R + L+
Sbjct: 288 IVLDSESDKIRYSYTKQLID 307
>gi|213417971|ref|ZP_03351051.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 113
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 6/113 (5%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS- 92
+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A
Sbjct: 1 MDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPA 60
Query: 93 -----NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
K G +++ + K +I++S ND +A+A+ + +++ F+ MN
Sbjct: 61 LRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNA 113
>gi|237733921|ref|ZP_04564402.1| serine-type D-Ala-D-Ala carboxypeptidase [Mollicutes bacterium D7]
gi|229383002|gb|EEO33093.1| serine-type D-Ala-D-Ala carboxypeptidase [Coprobacillus sp. D7]
Length = 184
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/182 (24%), Positives = 88/182 (48%), Gaps = 7/182 (3%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++ + + ++++ + A + Y +++ + VI + D+ + AS++K+MT
Sbjct: 6 KKMKLGLIISLMMTLVNTNVSAVPFQGKSYIVMEASHQIVIEGSNQDYIQSVASISKIMT 65
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ ++ L T IT+ ++ S G ++L + L L+++S ND AV
Sbjct: 66 CIIAIENME-----LDTIITVDDTINKAWGSGVYIHIGDKISLRDLLYGLMLRSGNDAAV 120
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKT 179
IA+++ K KFV MN+ +K L L +T F N G+ +G+ +T DMA L
Sbjct: 121 MIAKAVGKEIPKFVDMMNDKAKELQLHSTTFSNPTGLDEEDNGNQSTVYDMARLMAYCHQ 180
Query: 180 DF 181
+
Sbjct: 181 NP 182
>gi|269102713|ref|ZP_06155410.1| murein-DD-endopeptidase [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268162611|gb|EEZ41107.1| murein-DD-endopeptidase [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 242
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 46/218 (21%), Positives = 81/218 (37%), Gaps = 10/218 (4%)
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALK 109
AS+TKLMTA V K L IT +K + + + + GST++ +
Sbjct: 1 MPIASITKLMTAMVTLDA----KLPLNEKITFNKADKERMYNNYTRVRLGSTLSRGETIH 56
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+ ++ S N A A+A K FV+ MN +K LG++ T F+++ G+ T +
Sbjct: 57 IALMSSENLAAAALAGHYPGGSKAFVKAMNAKAKALGMTHTRFVDSSGLDPRNVSTASDV 116
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKK----YPNTNWAVGTFLG-ADGMKTGFTCAS 224
++ K + + Y NTN + KTG +
Sbjct: 117 SKLVRAAYKYPQIRKYSTTPVHTAYFGKPNYKLGYTNTNALARGKKWTVNLTKTGHLKVA 176
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
G + + + V+L + T + +
Sbjct: 177 GHCLAMVTTIQGRKYLMVMLDTQGKLTPVGDAGRIKKW 214
>gi|145496166|ref|XP_001434074.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124401197|emb|CAK66677.1| unnamed protein product [Paramecium tetraurelia]
Length = 496
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 53/305 (17%), Positives = 97/305 (31%), Gaps = 48/305 (15%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENY----PDHPWNPASLTK 58
+ LS +I + + AS+TK
Sbjct: 188 KIFPNKLTVSLSVHQAIPAIKNKVSAKRWVMFTKQKNEKFFNKQVGWQEFQKGEVASITK 247
Query: 59 LMTAYVVFSFLKEKKAMLTT-PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
+MT Y ++LKE I I +A +++ G +T+ L L++ S N
Sbjct: 248 IMTCYTTLTYLKECNIEPEQIKIKIPGHAECIDGTSAFLNAGGILTIKQLLFALMLPSGN 307
Query: 118 DIAVAIAESL---------------------------------CKTEKKFVQHMNNTSKN 144
D A+ + ++ + F+ MN + +
Sbjct: 308 DAALVLGFTIAYLMILQKTEIYQYNRYLKGAIIDIEPQIERNKKLLKHTFLDQMNKHANS 367
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT---------DFPQYMHYFQIKGLEI 195
+ + T++ + HG+ + + D++ L + H KG +
Sbjct: 368 IKMENTNYSSVHGLNDEKNVSCPHDISKLIEKCIQLEVFLEIITTKIFKTHALTDKGSKS 427
Query: 196 KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K+ NTN + G G+KTG T +G + I V+L N R +
Sbjct: 428 TFYKWKNTNKLLKK-SGWMGVKTGVTPNAGPCFTGYYKNENLEAIIVVLNCSSMNQRFRD 486
Query: 256 SASLL 260
+ LL
Sbjct: 487 AEVLL 491
>gi|302519918|ref|ZP_07272260.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
gi|302428813|gb|EFL00629.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. SPB78]
Length = 939
Score = 74.6 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 61/302 (20%), Positives = 111/302 (36%), Gaps = 22/302 (7%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKK------AMLTTPITISKNASEYPPSNSTFKKGSTM 102
P AS+ K+MTAY+V KK + S S + G +
Sbjct: 608 KPVPIASVAKVMTAYLVLRDHPVKKGGDGASITMDQKAEDDAGLSAQNESTVDVRAGQKL 667
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ A++ +++ SAN+IA +A +EK FV MN + LG+ T + + G+
Sbjct: 668 SQKEAIEAIMLASANNIARQLARWDAGSEKDFVAKMNKAADELGMKNTTYTDPSGL-NKT 726
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+TA D L D ++ GK N N V G+KTG T
Sbjct: 727 TVSTAEDQVKLGKVAMKDPLFREVVRMPAYVDSNGKTQTNWNRLVPMNNTV-GIKTGTTT 785
Query: 223 ASGFNIVASAIQG----DQSLIAVILG---ALDRNTRNKVS----ASLLSMGFYNKTDRK 271
A+G N++ +A + ++++ +L A + N+ + +L+ K
Sbjct: 786 AAGGNLLYAATKEVGGTTRTIVGAVLAQPPAPEDNSILTGALNAGKALIEAAQGTLVAEK 845
Query: 272 KINYIIKD-FYQQNLSNEVPNISEEVCTTQK-EIINYNTQMKEAKDKESHF-IDFEKITL 328
+ L P ++ + T + ++ + H K+ +
Sbjct: 846 VVKKGDVVGSVDDGLGGTTPVVAAKDLTAVGWPGLTVRLKLVDDGTPPPHEAAAGTKVGV 905
Query: 329 LK 330
L+
Sbjct: 906 LR 907
>gi|226323178|ref|ZP_03798696.1| hypothetical protein COPCOM_00950 [Coprococcus comes ATCC 27758]
gi|225208368|gb|EEG90722.1| hypothetical protein COPCOM_00950 [Coprococcus comes ATCC 27758]
Length = 288
Score = 74.2 bits (180), Expect = 2e-11, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 91/241 (37%), Gaps = 24/241 (9%)
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTA 167
+++S ND AVAIAE L + +F MN ++ +G + HF+ +G+ + H +A
Sbjct: 1 MLESHNDSAVAIAEHLAGSVPQFAGWMNEKAEEIGCTEAHFVTPNGLDEEDVGGVHSISA 60
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEI---------KGKKYPNTNWAVGTFLGADGMKT 218
D+A + P+ + I + N N + GA KT
Sbjct: 61 ADLAKIMSYCVLRSPKAAEFLAITQMPAYSFSDAEGKGNFSCSNHNAFLQMMDGAISGKT 120
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNKTDRKKINY 275
GFT +G+ V + ++ + +L ++N + + L+ G +
Sbjct: 121 GFTGDAGYCYVGALQSEGRTFVVALLACGWPNNKNYKWTDTRKLMEYGMAHYRY------ 174
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ ++ +++P + ++K + + + + K ++ +
Sbjct: 175 --AEVWKIPELSKIPVENSVSKNGLFGKTAVEVEIKGKESPGKILVGDDDVAEEKTEVPE 232
Query: 336 K 336
K
Sbjct: 233 K 233
>gi|269128157|ref|YP_003301527.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Thermomonospora curvata DSM 43183]
gi|268313115|gb|ACY99489.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Thermomonospora curvata DSM 43183]
Length = 1003
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 58/220 (26%), Positives = 90/220 (40%), Gaps = 12/220 (5%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS-------NSTFKKGST 101
P AS+ K+MTAYV + TIS + P + + G
Sbjct: 676 RPIPTASVAKVMTAYVFLKNHPLEPGEDGPTFTISAEEAARLPFRKKRGESHVDVRAGQR 735
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
T AL+ L+V SAN+IA +A + FV MN T+K LG+ T + + G
Sbjct: 736 FTERKALEALMVVSANNIAHELARWDSGSISAFVAKMNATAKELGMHNTRYTDPSGYDSG 795
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
T A + +L ++ + ++ E G P N +G + G G KTG+T
Sbjct: 796 TVSTAADQVKLLRAAMRIPAFAEIVAERVYDPEDGGPVRPAGNVLLGNY-GIVGGKTGYT 854
Query: 222 CASGFNIVASAIQG----DQSLIAVILGALDRNTRNKVSA 257
A+G N V +A + D +I ++G R +
Sbjct: 855 DAAGGNFVFAARRQVAGVDTLMIGAVMGQHGRAGSALDAM 894
>gi|163815706|ref|ZP_02207078.1| hypothetical protein COPEUT_01887 [Coprococcus eutactus ATCC 27759]
gi|158449011|gb|EDP26006.1| hypothetical protein COPEUT_01887 [Coprococcus eutactus ATCC 27759]
Length = 318
Score = 74.2 bits (180), Expect = 3e-11, Method: Composition-based stats.
Identities = 42/253 (16%), Positives = 81/253 (32%), Gaps = 23/253 (9%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
L+D + + + P PASL KL + ++ IS
Sbjct: 59 NAKSLILVDCSDDEIFVSKNENEPQIPASLAKLFVIEYASTLADLDSIVVADYGAIS--- 115
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-----------LCKTEKKFV 135
P S+ K L N ++V S ND A +A+ + + F+
Sbjct: 116 LTKPGSSVAQIKEKEYFLHNLFAAMLVPSGNDAAYVVADYCGGLLSPQAESCQERVRIFM 175
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW---RIKTDFPQYMHYFQIKG 192
+++N + G T + G TT ++ + +
Sbjct: 176 ENLNLHLQQQGYLDTVLYDPSGFDMEALTTTLDLKEVVYRLLEYSWFREIVSQNTYTATL 235
Query: 193 LEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ + + NTN G+KTG + + +N++ Q + + LG+
Sbjct: 236 PDGSTQIWQNTNAFLDPTSEYYNENVCGIKTG-SLSDDYNLIVLYQQHGKEFLICSLGSQ 294
Query: 248 DRNTRNKVSASLL 260
++R +L
Sbjct: 295 SDSSRYDDVNFIL 307
>gi|255522654|ref|ZP_05389891.1| D-alanyl-D-alanine carboxypeptidase, putative [Listeria
monocytogenes FSL J1-175]
Length = 168
Score = 73.9 bits (179), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 3/135 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASLTKLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVENGEPLYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGANFPKEMNNQAKKL 146
Query: 146 GLSA-THFMNAHGVV 159
G+S+ T F++A G+
Sbjct: 147 GMSSKTTFVSASGLD 161
>gi|218458344|ref|ZP_03498435.1| putative penicillin-binding protein precursor [Rhizobium etli Kim
5]
Length = 122
Score = 73.5 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 52/99 (52%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
++ FL+ + + L+D TG V+ W PASLTKLMT Y VF ++
Sbjct: 17 FTVAATAAFLASISLAQANPHILVDVQTGRVLEHEEAFRKWYPASLTKLMTVYTVFDAIR 76
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ L TPI +SK A+ P + FK G +TLD+ALK
Sbjct: 77 AGQISLDTPIVMSKRAAAQPAAKMYFKPGQKLTLDSALK 115
>gi|289808199|ref|ZP_06538828.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 83
Score = 73.1 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
DG+KTG T +GFN++ASA+ G + LIAV++GA R + + LL G N +
Sbjct: 1 IDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQI 60
Query: 273 INYIIKDFYQQNLSNEVPN 291
++ K ++ +
Sbjct: 61 LHSGKKVGSERIWYGDKRK 79
>gi|255017532|ref|ZP_05289658.1| hypothetical protein LmonF_06693 [Listeria monocytogenes FSL
F2-515]
Length = 166
Score = 73.1 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 55/135 (40%), Gaps = 3/135 (2%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G + E D ASL+KLMTA++V + + + + +
Sbjct: 29 LSANAAAVYSVENGEALYEQNADKVMPIASLSKLMTAFLVLEAVDNNELSWDEKLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + T ++ + ++ SAND A + F + MNN +K L
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAAETLG--DRLDGADFPKEMNNQAKKL 146
Query: 146 GLSA-THFMNAHGVV 159
G+S+ T F++A G+
Sbjct: 147 GMSSKTTFVSASGLD 161
>gi|300786276|ref|YP_003766567.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
U32]
gi|299795790|gb|ADJ46165.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
U32]
Length = 307
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 6/209 (2%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ P AS+TK+MTAYVV +T+ + A S
Sbjct: 66 LGSRGEQRPVPIASVTKVMTAYVVLKDHPLGADEAGPEVTVDEQAEAEATSAEESSAPVR 125
Query: 102 MTLDNALKL----LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+ + ++V S N++A +A ++ FV MN + LG+++T + A G
Sbjct: 126 AGRRFSERDLLALMLVPSGNNVARLLARWDAGSQDAFVAKMNREAAALGMTSTSYTGASG 185
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
V T + + +K + + ++ NTN +G G G+K
Sbjct: 186 VEDSTTSTATDQLRLAREAMKNPVIRAIAATPSLRIDGVPGAVVNTNTLLGH-DGVIGLK 244
Query: 218 TGFTCASGFNIVASAI-QGDQSLIAVILG 245
TG + A+G ++ +A + ++ V+L
Sbjct: 245 TGSSTAAGGALMWAAQARDGALILGVVLH 273
>gi|213418400|ref|ZP_03351466.1| D-alanyl-D-alanine carboxypeptidase fraction A [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
Length = 109
Score = 73.1 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 4 FLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
+ +S + Y L+D N+G V+AE D +PASL
Sbjct: 39 LTTALCATFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVLAEQNADERRDPASL 98
Query: 57 TKLMTAYVV 65
TK+MT+YV+
Sbjct: 99 TKMMTSYVI 107
>gi|116490237|ref|YP_809781.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
gi|290889619|ref|ZP_06552709.1| hypothetical protein AWRIB429_0099 [Oenococcus oeni AWRIB429]
gi|116090962|gb|ABJ56116.1| D-Ala-D-Ala carboxypeptidase A, Serine peptidase, MEROPS family S11
[Oenococcus oeni PSU-1]
gi|290480817|gb|EFD89451.1| hypothetical protein AWRIB429_0099 [Oenococcus oeni AWRIB429]
Length = 440
Score = 72.7 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 43/264 (16%), Positives = 96/264 (36%), Gaps = 33/264 (12%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
I K +++ +G VIAE P+ AS +KL+TAY+V + E K I
Sbjct: 46 PIQLKTKAASALVVNFKSGQVIAEKNPNKKLAIASTSKLLTAYLVLKAIHEGKLSWNKKI 105
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK----SANDIAVAIAESLCKTEKKFVQ 136
++ + + ++ L+ S N + + +++ + KF +
Sbjct: 106 KANQEIYQLSKNPDLMNVTLYKNGSYTIRQLMNSTLLISTNATGILLGDAVSGNQTKFAE 165
Query: 137 HMNNTSKNLGLSATHFMNAHGV----------------VQHGHYTTARDMAILSWRIKTD 180
MN T+ + G+ + F + V Q + +++ +A +++R+ TD
Sbjct: 166 LMNKTAASFGIPKSEFKFYNAVGISNSYLGSGKLKGVSDQAENLASSKALATIAYRLFTD 225
Query: 181 FPQYMHYFQIKGLEIKG----------KKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIV 229
+P+ + Q L N + K G + +G ++
Sbjct: 226 YPEVIKIIQQPELNFYDSNKKTSFKSATTLNTFNSEISKMKMKFIAAKNGASKKAGSVML 285
Query: 230 ASAIQ--GDQSLIAVILGALDRNT 251
+ +Q +++++ +
Sbjct: 286 GLTDKLGNNQQYLSIVMNGSSYDD 309
>gi|46143271|ref|ZP_00135568.2| COG1686: D-alanyl-D-alanine carboxypeptidase [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 251
Score = 72.7 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 48/237 (20%), Positives = 94/237 (39%), Gaps = 9/237 (3%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+ D ++ ++ AS+TKLMTA + K K + ++ +
Sbjct: 1 MYDFTHDRILESRAANNVQPIASVTKLMTANIFLENNKNKNCSASISD---QDFDHIKGT 57
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ K + + D LK ++V S N A A++ S + +F+Q MN ++ LG+ +T F
Sbjct: 58 GTKLPKHTPIACDELLKAMLVHSDNYAAHALSRSAGMSRAQFIQKMNQKAQQLGMRSTRF 117
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL- 211
++ G+ + + + + + Q + + + + + N +
Sbjct: 118 SDSSGLSSANISSALDLVKLAKYSLNNAKIQELSNTKAAYVRVGKRNVFMQNTSALVREE 177
Query: 212 --GADGMKTGFTCASGFNIVASAIQG-DQSLIAVI-LGALDRNTRNKVSA-SLLSMG 263
A KTG+ SG+N+V + + I VI L TR+ + L G
Sbjct: 178 LFDAAINKTGYIRESGYNLVFVNKHQCNHATIGVISLNNRSSATRSTFTKNKLEQYG 234
>gi|317472783|ref|ZP_07932094.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
gi|316899702|gb|EFV21705.1| D-alanyl-D-alanine carboxypeptidase [Anaerostipes sp. 3_2_56FAA]
Length = 287
Score = 72.7 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 13/212 (6%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L++ T V+A PAS+TK+MTA +V + L +TI K+ +
Sbjct: 78 KEALLVNNTTNQVVAAQKVFDKAYPASITKIMTALLVLENCR-----LDDVVTIDKDITF 132
Query: 89 YPP--SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
P + KKG +T++ L LIV SAND A+A+ + ++KKFV MN ++ LG
Sbjct: 133 DDPAAVSLHLKKGDKITVEALLNGLIVMSANDTAIALGRKVAGSDKKFVAMMNKRARELG 192
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+ T+F N +G+ HYTTA D+ ++ + ++ + I G +Y N
Sbjct: 193 ATNTNFENPNGLHLKNHYTTAYDLYLIFQ----ELVKHNEFLSIAGKASSYIEYTNQKTN 248
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + T + A + ++
Sbjct: 249 SRHLIWQRPISTCW--AIIIFLTKYLCWEERR 278
>gi|213161756|ref|ZP_03347466.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
Length = 147
Score = 72.7 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 4/101 (3%)
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY----IIKDFYQQNLSNEVPN 291
D LI+V+LGA R S LL+ GF I + + + +
Sbjct: 1 DMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKREVNLG 60
Query: 292 ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ T N + ++ +K ++
Sbjct: 61 AGDAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTI 101
>gi|289769992|ref|ZP_06529370.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
gi|289700191|gb|EFD67620.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
Length = 542
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 23/253 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDT--------NTGHV---------IAENY 46
L++I ++ ++ P + D +G +
Sbjct: 154 ILLVIVFGVVQSMRPLPAPTLDLTAQDSFSFDGGKPQIPWPESGQAALDVQGIGSFGSSG 213
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTM 102
P AS+ K+MTAY+V K I I + A + S G ++
Sbjct: 214 DQKPVPIASVAKVMTAYLVLRDHPLKSGAEGPKIKIDQAAEDQSQAGQESTVDVFAGDSI 273
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ AL+ +++ SAN++A +A +EK FV+ MN +K+LG++ T + + G+
Sbjct: 274 SQREALQAILIASANNVARLLARWDAGSEKAFVEKMNGAAKDLGMTNTTYTDPSGLNNTT 333
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+TA D L+ + + + KG+ + N N VG G G+KTG T
Sbjct: 334 -VSTAVDQVKLAKAAMKEPAFREVAAMMSYNDYKGENHGNWNQLVGHN-GVVGIKTGTTT 391
Query: 223 ASGFNIVASAIQG 235
++ N+V +A +
Sbjct: 392 SALGNLVFAAKKE 404
>gi|256786097|ref|ZP_05524528.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
Length = 577
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 23/253 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDT--------NTGHV---------IAENY 46
L++I ++ ++ P + D +G +
Sbjct: 189 ILLVIVFGVVQSMRPLPAPTLDLTAQDSFSFDGGKPQIPWPESGQAALDVQGIGSFGSSG 248
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTM 102
P AS+ K+MTAY+V K I I + A + S G ++
Sbjct: 249 DQKPVPIASVAKVMTAYLVLRDHPLKSGAEGPKIKIDQAAEDQSQAGQESTVDVFAGDSI 308
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ AL+ +++ SAN++A +A +EK FV+ MN +K+LG++ T + + G+
Sbjct: 309 SQREALQAILIASANNVARLLARWDAGSEKAFVEKMNGAAKDLGMTNTTYTDPSGLNNTT 368
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+TA D L+ + + + KG+ + N N VG G G+KTG T
Sbjct: 369 -VSTAVDQVKLAKAAMKEPAFREVAAMMSYNDYKGENHGNWNQLVGHN-GVVGIKTGTTT 426
Query: 223 ASGFNIVASAIQG 235
++ N+V +A +
Sbjct: 427 SALGNLVFAAKKE 439
>gi|21222827|ref|NP_628606.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces coelicolor A3(2)]
gi|7635949|emb|CAB88446.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
coelicolor A3(2)]
Length = 832
Score = 72.3 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 57/253 (22%), Positives = 103/253 (40%), Gaps = 23/253 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDT--------NTGHV---------IAENY 46
L++I ++ ++ P + D +G +
Sbjct: 444 ILLVIVFGVVQSMRPLPAPTLDLTAQDSFSFDGGKPQIPWPESGQAALDVQGIGSFGSSG 503
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTM 102
P AS+ K+MTAY+V K I I + A + S G ++
Sbjct: 504 DQKPVPIASVAKVMTAYLVLRDHPLKSGAEGPKIKIDQAAEDQSQAGQESTVDVFAGDSI 563
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ AL+ +++ SAN++A +A +EK FV+ MN +K+LG++ T + + G+
Sbjct: 564 SQREALQAILIASANNVARLLARWDAGSEKAFVEKMNGAAKDLGMTNTTYTDPSGLNNTT 623
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+TA D L+ + + + KG+ + N N VG G G+KTG T
Sbjct: 624 -VSTAVDQVKLAKAAMKEPAFREVAAMMSYNDYKGENHGNWNQLVGHN-GVVGIKTGTTT 681
Query: 223 ASGFNIVASAIQG 235
++ N+V +A +
Sbjct: 682 SALGNLVFAAKKE 694
>gi|266623881|ref|ZP_06116816.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
gi|288864301|gb|EFC96599.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
Length = 145
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 21/148 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-------------TNKLPYYTLLDTNTGHVIAENYP 47
MR I+ +L F + + L+D +TG ++
Sbjct: 3 MRHKKNILFYFLLCMAVAFTGLTPMTVYGAADWPSEVAMEADGGILMDADTGTILYGKNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE---YPPSNSTFKKGSTMTL 104
+ + PAS+TKL+TA VV + L + S+NA + + G M++
Sbjct: 63 NEAYYPASITKLLTAQVVLDRCR-----LDEVVEFSQNAVYNVEQGSKSLSMDTGDRMSV 117
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEK 132
+ L LI+ SAN++A A+AE + +
Sbjct: 118 KDCLYGLILHSANEVANALAEHAAGSTE 145
>gi|172058567|ref|YP_001815027.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Exiguobacterium sibiricum 255-15]
gi|171991088|gb|ACB62010.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Exiguobacterium sibiricum 255-15]
Length = 421
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 7/209 (3%)
Query: 45 NYPDHPWNPASLTKLMTAYVVFS-FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
PAS TKL+TA V + ++ T +T S A S + F+ G +T
Sbjct: 198 KESFARRYPASTTKLLTAIVAYDAAAQKGTLDQTFTLTYSMLAVPSGSSTAGFRSGDKVT 257
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ L ++++S ND A AIA +E KFV MN+ + +G+SA+HFMN HG H
Sbjct: 258 MRQLLNGMLIRSGNDAAKAIAVRTAGSESKFVSLMNSRASRIGMSASHFMNPHGFYHPSH 317
Query: 164 YTTARDMAILSWRIKTDFPQYM------HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
YTTA DM L+ +KG + + +TN ++ K
Sbjct: 318 YTTAADMQKLANTYANYSYLMTVSGRKSFQTTVKGPYARTLTWYHTNTSLPGDTRVYASK 377
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGA 246
TG+T S + V +G V L
Sbjct: 378 TGYTPESAYTRVFFIKKGSTRYGLVTLKG 406
>gi|256390347|ref|YP_003111911.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora
acidiphila DSM 44928]
gi|256356573|gb|ACU70070.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora
acidiphila DSM 44928]
Length = 348
Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/226 (16%), Positives = 70/226 (30%), Gaps = 16/226 (7%)
Query: 42 IAENYP--------DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+ P AS+ K+MTAYVV I + + A++
Sbjct: 103 LWAQNIGSLGSSGDQEPVPIASVAKVMTAYVVLRDHPLSDGQAGPDIVVDQQAADESSLR 162
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIA----ESLCKTEKKFVQHMNNTSKNLGLSA 149
+ + L+ A +A T+ FV MN + +LG+
Sbjct: 163 DESSAPVHAGQHLSERTLLELMLVPSANNVARLLGRWDAGTQDAFVAEMNAAAVSLGMKN 222
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T + + G+ T M + + + + A+
Sbjct: 223 TTYTDPSGLDSSTRSTAVDQMQLAKVALTDPVLLALTAEPATQVPDDPASLLTNTDALLG 282
Query: 210 FLGADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILGALDRNT 251
G G KTG + +G ++ +A + D ++ V+L T
Sbjct: 283 SDGVVGGKTGSSTPAGGALMWAAHRTLDGEDHLVLGVVLHQSSGTT 328
>gi|290959626|ref|YP_003490808.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei 87.22]
gi|260649152|emb|CBG72266.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces scabiei
87.22]
Length = 1000
Score = 71.5 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 71/366 (19%), Positives = 127/366 (34%), Gaps = 39/366 (10%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKL-PYYTL----------------LDTNTGHVIAENY 46
L++I A+ ++ P + A Y +D N +
Sbjct: 610 ILLVIVFAVAQSLRPLPAPALALTADESYAFKGGKVDLPWPAEGQGWMDVNGIGTMDSFG 669
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS--------NSTFKK 98
P S+ K MTAYV+ K IT+ N+ +
Sbjct: 670 EQKPVAIGSVAKAMTAYVILKDHPMKPGEKGKTITVDAKGETEGGYDKDGESTLNTVKEG 729
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
D ++I + N + +EK FV+ MN +K+LG+ T + + G+
Sbjct: 730 DELSQYDAIAAIMIPSANNIARLLARWDSKGSEKAFVKKMNAAAKDLGMKNTTYTDPSGL 789
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
+ +TA D L + ++ GKK+ N N V + A G+KT
Sbjct: 790 KETT-VSTAEDQVKLGNALVRMKALTDITKLPTWVDPSGKKWDNYNRLV-PYNNAIGIKT 847
Query: 219 GFTCASGFNIVASAIQ--GDQSLIAV--ILGALDR---NTRNKVSASLLSMGFYNKTDRK 271
G T A+G N++ +A Q G ++ I V +LG +T N VS + + T
Sbjct: 848 GSTTAAGGNLLFAATQEVGGETAIVVGAVLGQHTPPIIDTVNAVSKTAMIAAQDALTSDT 907
Query: 272 KINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE--KITLL 329
+ ++ + + + V T + + + + I E T++
Sbjct: 908 ILKKGD---VVGHVDDGLGGRTPVVVTKNVSAVGWAGKTVRLELDADATIPHEAKPGTVV 964
Query: 330 KNKITK 335
+ I
Sbjct: 965 GSLIVG 970
>gi|239942888|ref|ZP_04694825.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
roseosporus NRRL 15998]
gi|239989348|ref|ZP_04710012.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
roseosporus NRRL 11379]
gi|291446361|ref|ZP_06585751.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291349308|gb|EFE76212.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 320
Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats.
Identities = 53/234 (22%), Positives = 94/234 (40%), Gaps = 16/234 (6%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ P AS+TK+MTAYV+ + + + A++ S+
Sbjct: 74 LGTRGEQKPVPIASVTKVMTAYVILKDHPMRAGAPGATVVADQRAADESYSSVETTAPVL 133
Query: 102 MTLDNALKL----LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+ + ++V S N++A +A EK FV MN T+ LG+ AT + G
Sbjct: 134 AGREYTQRRLLELMMVPSGNNVARLLARWDAGDEKAFVAKMNRTAAGLGMRATTYTGVSG 193
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
+ T A +A+ +K + + G + NTN +G G G+K
Sbjct: 194 METSTRSTAADQLALARAAMKDPAFRQIVATASVTAPGAGVTFRNTNKLLGH-DGVIGLK 252
Query: 218 TGFTCASGFNIVASAIQG----DQSLIAVILG-------ALDRNTRNKVSASLL 260
TG + +G N+V + Q D+ ++ V+L A ++ S +L+
Sbjct: 253 TGSSTPAGGNLVWATRQKVAGADRLVLGVVLHQRAGTTPAEGSAAAHEASRALI 306
>gi|319940700|ref|ZP_08015042.1| hypothetical protein HMPREF9464_00261 [Sutterella wadsworthensis
3_1_45B]
gi|319805851|gb|EFW02618.1| hypothetical protein HMPREF9464_00261 [Sutterella wadsworthensis
3_1_45B]
Length = 395
Score = 70.8 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 61/348 (17%), Positives = 113/348 (32%), Gaps = 36/348 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M + L I + + + + L+D + I + P P N +S+ LM
Sbjct: 24 MHRLLTFILLPLFAL--------PSAVAASSVLVDLESSQTILADRPRTPENASSMLPLM 75
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T Y LK ++ G +TL + L+ L++ D
Sbjct: 76 TVYTTLELLKNGTIKNNLFESV-----------KNPWSGPDITLADLLQGLLMTGDPDAV 124
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
A+ ++L +EK F + +N+T+ LG+ AT F +TA+DMA+L+ + T
Sbjct: 125 EAVRQTLQLSEKDFSRQLNHTADALGMFATEFTFPCNE-NTPCISTAQDMALLAESLYTH 183
Query: 181 FPQYMHYFQIKGLEIKGKKY-PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD--- 236
+ L + K N+ + G+ + A +
Sbjct: 184 HAISRIWGASHSLTLPDGKILHTENFFLEKSPAITGVYVSPKREHIASTAAVLSENPKGS 243
Query: 237 ----QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNI 292
+ L+AV L DR++ + +SLL G+ + K + E ++
Sbjct: 244 DGRLRRLLAVSLNNNDRDSLRQEISSLLLRGYRDYETLKLYSEGDFVANVPIYKGEETDV 303
Query: 293 SEEV--------CTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
V T Q + + +
Sbjct: 304 RAVVPQTVFITMTTEQMLTAGAKALEVRVRYASPLIAPIKAGQYVGTL 351
>gi|294815047|ref|ZP_06773690.1| Penicillin binding protein PbpA [Streptomyces clavuligerus ATCC
27064]
gi|294327646|gb|EFG09289.1| Penicillin binding protein PbpA [Streptomyces clavuligerus ATCC
27064]
Length = 698
Score = 70.8 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 58/295 (19%), Positives = 113/295 (38%), Gaps = 23/295 (7%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK-----KGST 101
P+ AS K+MTAYV+ K+ IT+ + + +G T
Sbjct: 359 PEKSVPTASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQT 418
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ + LK+L++ S N+I +A KT+ FV+ MN +K+LG+ T + + G+
Sbjct: 419 FSQQDMLKMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSGLD 478
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ T + + ++ D + + + G+ Y N + + LG G+KTG
Sbjct: 479 KGTVSTAVDQLKLAEAVMEYDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIKTG 538
Query: 220 FTCASGFNIVASAIQ---GDQSLIAVIL---GALDRNTRNKVSASLLSMGFYNKTDRKKI 273
+G + +A + G+ LI + A + S L +
Sbjct: 539 SNTPAGGTLSWAAYKTFDGEDRLILGTMMAQHAPGPDINGGDSLVL----------VQDN 588
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + ++ L++ EV + + K + + +K+TL
Sbjct: 589 SRKVVASVREMLTSANVVKKGEVVGHVDDRFGRRIPVVTTKSLDLVGLSGQKVTL 643
>gi|254387565|ref|ZP_05002804.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
gi|326443414|ref|ZP_08218148.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
gi|197701291|gb|EDY47103.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
Length = 693
Score = 70.8 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 58/295 (19%), Positives = 113/295 (38%), Gaps = 23/295 (7%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK-----KGST 101
P+ AS K+MTAYV+ K+ IT+ + + +G T
Sbjct: 354 PEKSVPTASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQT 413
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ + LK+L++ S N+I +A KT+ FV+ MN +K+LG+ T + + G+
Sbjct: 414 FSQQDMLKMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSGLD 473
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ T + + ++ D + + + G+ Y N + + LG G+KTG
Sbjct: 474 KGTVSTAVDQLKLAEAVMEYDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIKTG 533
Query: 220 FTCASGFNIVASAIQ---GDQSLIAVIL---GALDRNTRNKVSASLLSMGFYNKTDRKKI 273
+G + +A + G+ LI + A + S L +
Sbjct: 534 SNTPAGGTLSWAAYKTFDGEDRLILGTMMAQHAPGPDINGGDSLVL----------VQDN 583
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + ++ L++ EV + + K + + +K+TL
Sbjct: 584 SRKVVASVREMLTSANVVKKGEVVGHVDDRFGRRIPVVTTKSLDLVGLSGQKVTL 638
>gi|2764670|emb|CAA04971.1| pbp2 [Streptomyces clavuligerus]
Length = 696
Score = 70.8 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 58/295 (19%), Positives = 113/295 (38%), Gaps = 23/295 (7%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK-----KGST 101
P+ AS K+MTAYV+ K+ IT+ + + +G T
Sbjct: 357 PEKSVPTASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQT 416
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ + LK+L++ S N+I +A KT+ FV+ MN +K+LG+ T + + G+
Sbjct: 417 FSQQDMLKMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSGLD 476
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ T + + ++ D + + + G+ Y N + + LG G+KTG
Sbjct: 477 KGTVSTAVDQLKLAEAVMEYDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIKTG 536
Query: 220 FTCASGFNIVASAIQ---GDQSLIAVIL---GALDRNTRNKVSASLLSMGFYNKTDRKKI 273
+G + +A + G+ LI + A + S L +
Sbjct: 537 SNTPAGGTLSWAAYKTFDGEDRLILGTMMAQHAPGPDINGGDSLVL----------VQDN 586
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + ++ L++ EV + + K + + +K+TL
Sbjct: 587 SRKVVASVREMLTSANVVKKGEVVGHVDDRFGRRIPVVTTKSLDLVGLSGQKVTL 641
>gi|3328163|gb|AAC32488.1| penicillin binding protein PbpA [Streptomyces clavuligerus ATCC
27064]
Length = 409
Score = 70.8 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 58/295 (19%), Positives = 113/295 (38%), Gaps = 23/295 (7%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK-----KGST 101
P+ AS K+MTAYV+ K+ IT+ + + +G T
Sbjct: 70 PEKSVPTASTAKIMTAYVLLRKHPLKRGEPGPTITVDAQTVAEGKAKDESRIEGLTEGQT 129
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ + LK+L++ S N+I +A KT+ FV+ MN +K+LG+ T + + G+
Sbjct: 130 FSQQDMLKMLMIPSGNNIGRLLARWSTKTDDQTAFVREMNEAAKDLGMKNTVYTDPSGLD 189
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ T + + ++ D + + + G+ Y N + + LG G+KTG
Sbjct: 190 KGTVSTAVDQLKLAEAVMEYDVFRDVVALPNAEIPGHGRIYNNNDRLILAGLGIVGIKTG 249
Query: 220 FTCASGFNIVASAIQ---GDQSLIAVIL---GALDRNTRNKVSASLLSMGFYNKTDRKKI 273
+G + +A + G+ LI + A + S L +
Sbjct: 250 SNTPAGGTLSWAAYKTFDGEDRLILGTMMAQHAPGPDINGGDSLVL----------VQDN 299
Query: 274 NYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITL 328
+ + ++ L++ EV + + K + + +K+TL
Sbjct: 300 SRKVVASVREMLTSANVVKKGEVVGHVDDRFGRRIPVVTTKSLDLVGLSGQKVTL 354
>gi|307324182|ref|ZP_07603390.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
violaceusniger Tu 4113]
gi|306889913|gb|EFN20891.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
violaceusniger Tu 4113]
Length = 886
Score = 70.4 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 9/204 (4%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTL 104
P AS+TK+MTAYVV K ITI + A S + K+G T T
Sbjct: 557 KPVPIASVTKVMTAYVVLKDHPLKGDAEGPKITIDAQAAEEAKSADESRAAVKEGQTFTQ 616
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
L+LL++ S+N+IA +A + FV+ MN+ ++ LG+ T + + G+ +
Sbjct: 617 HQLLQLLLINSSNNIARLLARWDAGSLDAFVKKMNDAAEGLGMKQTTYTDPSGLKESTKS 676
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
T A + + ++++ + + + G + N N + G G+KTG + +
Sbjct: 677 TAADQLKLAKAAMQSEAFRAVVATPNAEIPGLGDRIYNNNNLLVK-PGVIGIKTGSSTPA 735
Query: 225 GFNIVASAIQ----GDQSLIAVIL 244
G ++ A++ Q ++ V+L
Sbjct: 736 GGALMWGAVRTIDGKKQRILGVVL 759
>gi|118587323|ref|ZP_01544750.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni ATCC BAA-1163]
gi|118432312|gb|EAV39051.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni ATCC BAA-1163]
Length = 273
Score = 70.4 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 52/264 (19%), Positives = 97/264 (36%), Gaps = 33/264 (12%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT----PITIS 83
+ + + G V+AE D AS+TKL+ Y +++ ++ + T I+
Sbjct: 9 AASALVAELD-GSVLAEKNADQRVPIASVTKLIIIYQLYAAVERHQLNWTDQLTTTKRIA 67
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + +G T T+ +AL L++ S N A AE L K + + +
Sbjct: 68 EFTKGEVVAEIKLTEGETYTVKDALDALLILSENTFAFVFAEKLFKNLTNWHRKTIALLE 127
Query: 144 NLGLSATHFMNAHGVVQHGHYT--------------TARDMAILSWRIKTDFPQYMHYFQ 189
+ G++ N G+ T +A+++ I++ +I FP+ + Q
Sbjct: 128 SWGINNPIIPNPAGLSNQDLETYKDPEMTDSYEPLFSAKEVLIITEKIVDRFPEVLKIAQ 187
Query: 190 IKGLEI--KGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++YP N G+KTG T ++V + + V
Sbjct: 188 EWKFNFKSNRQEYPYLNRFKFLAITKHKWI-GLKTG-TSPDTESLVGVVQVDQKKFVTVY 245
Query: 244 LGAL----DRNTR--NKVSASLLS 261
L A + R S +LS
Sbjct: 246 LAAKIDFLEPKGRNCYVESEKMLS 269
>gi|94991764|ref|YP_599863.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS2096]
gi|94545272|gb|ABF35319.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS2096]
Length = 231
Score = 70.0 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 19/175 (10%)
Query: 2 RQFLVIIAMAMLSNIFPFL--------------SIAETNKLPYYTLLDTNTGHVIAENYP 47
++ ++ I + ++ P + +++E N+ ++D N+ ++ ++
Sbjct: 3 KRIILTIFTFICFSMMPLVHAEDVMDITRQAGYTVSEVNRPKSSIVVDANSSDILWQDNI 62
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS----EYPPSNSTFKKGSTMT 103
D P +PAS++K+ T Y++F L + K + T IT + Y SN+ G
Sbjct: 63 DIPRDPASMSKMFTLYILFEELAKGKITMDTTITATPTDQAIANIYEISNNNIVAGVAYP 122
Query: 104 LDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+ + + + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 123 IRDLITMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASG 177
>gi|116491537|ref|YP_811081.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
gi|116092262|gb|ABJ57416.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
Length = 272
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 33/264 (12%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT----PITIS 83
+ + + G V+AE AS+TKL+ Y +++ ++ + T I+
Sbjct: 8 AASALVAELD-GSVLAEKNAHQRVPIASVTKLIIIYQLYAAVERHQLNWTDQLTTTKRIA 66
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + +G T T+ +AL L++ S N A AE L K + + +
Sbjct: 67 EFTKGEVVAEIKLTEGETYTVKDALDALLILSENTFAFVFAEKLFKNLTNWHRKTIALLE 126
Query: 144 NLGLSATHFMNAHGVVQHGHYT--------------TARDMAILSWRIKTDFPQYMHYFQ 189
+ G++ N G+ T +A+++ I++ +I FP+ + Q
Sbjct: 127 SWGINNPIIPNPAGLSNQDLETYKDPEMTDSYEPLFSAKEVLIITEKIVDRFPEVLKIAQ 186
Query: 190 IKGLEI--KGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++YP N G+KTG T + V + + V
Sbjct: 187 EWKFNFKSNRQEYPYLNRFKFLAITKHKWI-GLKTG-TSPDTESFVGIVQSDQKQFVTVY 244
Query: 244 LGAL----DRNTR--NKVSASLLS 261
L A + R S +LS
Sbjct: 245 LAAKIDFLEPKGRNCYVESEKMLS 268
>gi|145503045|ref|XP_001437500.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124404650|emb|CAK70103.1| unnamed protein product [Paramecium tetraurelia]
Length = 458
Score = 70.0 bits (169), Expect = 5e-10, Method: Composition-based stats.
Identities = 57/293 (19%), Positives = 108/293 (36%), Gaps = 45/293 (15%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVI----AENYPDHPWNPASLTKLMTAYVVF 66
+ +I I + + N G I AS+TK+MT Y
Sbjct: 165 VLSISIPVSSKIKHKVSSKKWAIFKRNKGETIFKKIYAYQDQQKSEVASITKVMTCYTTL 224
Query: 67 SFLKEKKAMLTT-PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
FL+EK+ + + I I +A +++ G M + L +++ S ND A+ ++
Sbjct: 225 KFLEEKRIDMESIRIKIPGHAECIDGTSAFLNAGGIMNVRQLLFAMMLPSGNDAALVLSY 284
Query: 126 SL----------------------------CKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
++ + +F+Q MNN ++NL + T++ + HG
Sbjct: 285 AIAFLKTCDSIQRYCNGHYIDCELEIEKNKFQLRTQFLQMMNNHAENLKMDKTNYNSVHG 344
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----------KGKKYPNTNWAV 207
+ + + A D+ L ++M + + K+ NTN +
Sbjct: 345 LNDTLNVSCALDIFKLVEECI-KIKEFMEIVNTRCFKTYAVTEQGNQGTYYKWKNTNKLL 403
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
G +G+KTG T +G D I ++L + + R K + L+
Sbjct: 404 KK-EGWEGIKTGITSNAGPCFSGYYKTDDFDAIVIVLQSSNMLQRFKDAEILI 455
>gi|326442723|ref|ZP_08217457.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
clavuligerus ATCC 27064]
Length = 824
Score = 69.6 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/213 (21%), Positives = 84/213 (39%), Gaps = 8/213 (3%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL------KEKKAMLTTPI 80
+ +D G V A P AS+TK MTAYV+ + + +
Sbjct: 472 EGQGAVAVDGV-GTV-ATYGDQKPRPIASVTKAMTAYVILREKPLTGKGQGDRITIDQRT 529
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
++ + S K G T L+LL++ SAN++A +A +E FV+ M
Sbjct: 530 EDEYHSGKNSESVVEVKAGQKYTQRQLLELLMIPSANNVARLLARWHAGSEAAFVKKMQA 589
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+ +LG+ T + + G+ T + + ++ + + + + +
Sbjct: 590 AADDLGMKDTVYTDPSGLRSTTVSTPLDQLKLAEAAMQDEVFREIVNTTKLKVPGIERTI 649
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
N+ G G+KTG + +G N++ SA
Sbjct: 650 YNSADKALLLDGVGGIKTGSSTPAGGNLLWSAN 682
>gi|294814332|ref|ZP_06772975.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
gi|294326931|gb|EFG08574.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
Length = 859
Score = 69.6 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/213 (21%), Positives = 84/213 (39%), Gaps = 8/213 (3%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL------KEKKAMLTTPI 80
+ +D G V A P AS+TK MTAYV+ + + +
Sbjct: 507 EGQGAVAVDGV-GTV-ATYGDQKPRPIASVTKAMTAYVILREKPLTGKGQGDRITIDQRT 564
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
++ + S K G T L+LL++ SAN++A +A +E FV+ M
Sbjct: 565 EDEYHSGKNSESVVEVKAGQKYTQRQLLELLMIPSANNVARLLARWHAGSEAAFVKKMQA 624
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+ +LG+ T + + G+ T + + ++ + + + + +
Sbjct: 625 AADDLGMKDTVYTDPSGLRSTTVSTPLDQLKLAEAAMQDEVFREIVNTTKLKVPGIERTI 684
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
N+ G G+KTG + +G N++ SA
Sbjct: 685 YNSADKALLLDGVGGIKTGSSTPAGGNLLWSAN 717
>gi|254388319|ref|ZP_05003554.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
gi|197702041|gb|EDY47853.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
Length = 883
Score = 69.6 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 45/213 (21%), Positives = 84/213 (39%), Gaps = 8/213 (3%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL------KEKKAMLTTPI 80
+ +D G V A P AS+TK MTAYV+ + + +
Sbjct: 531 EGQGAVAVDGV-GTV-ATYGDQKPRPIASVTKAMTAYVILREKPLTGKGQGDRITIDQRT 588
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
++ + S K G T L+LL++ SAN++A +A +E FV+ M
Sbjct: 589 EDEYHSGKNSESVVEVKAGQKYTQRQLLELLMIPSANNVARLLARWHAGSEAAFVKKMQA 648
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+ +LG+ T + + G+ T + + ++ + + + + +
Sbjct: 649 AADDLGMKDTVYTDPSGLRSTTVSTPLDQLKLAEAAMQDEVFREIVNTTKLKVPGIERTI 708
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
N+ G G+KTG + +G N++ SA
Sbjct: 709 YNSADKALLLDGVGGIKTGSSTPAGGNLLWSAN 741
>gi|290891137|ref|ZP_06554199.1| hypothetical protein AWRIB429_1589 [Oenococcus oeni AWRIB429]
gi|290479101|gb|EFD87763.1| hypothetical protein AWRIB429_1589 [Oenococcus oeni AWRIB429]
Length = 273
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 33/264 (12%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT----PITIS 83
+ + + G V+AE AS+TKL+ Y +++ ++ + T I+
Sbjct: 9 AASALVAELD-GSVLAEKNAHQRVPIASVTKLIIIYQLYAAVERHQLNWTDQLTTTKRIA 67
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + +G T T+ +AL L++ S N A AE L K + + +
Sbjct: 68 EFTKGEVVAEIKLTEGETYTVKDALDALLILSENTFAFVFAEKLFKNLTNWHRKTIALLE 127
Query: 144 NLGLSATHFMNAHGVVQHGHYT--------------TARDMAILSWRIKTDFPQYMHYFQ 189
+ G++ N G+ T +A+++ I++ +I FP+ + Q
Sbjct: 128 SWGINNPIIPNPAGLSNQDLETYKDPEMTDSYEPLFSAKEVLIITEKIVDRFPEVLKIAQ 187
Query: 190 IKGLEI--KGKKYPNTNWAV----GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
++YP N G+KTG T + V + + V
Sbjct: 188 EWKFNFKSNRQEYPYLNRFKFLAITKHKWI-GLKTG-TSPDTESFVGIVQSDQKQFVTVY 245
Query: 244 LGAL----DRNTR--NKVSASLLS 261
L A + R S +LS
Sbjct: 246 LAAKIDFLEPKGRNCYVESEKMLS 269
>gi|266623227|ref|ZP_06116162.1| penicillin-binding protein 5 [Clostridium hathewayi DSM 13479]
gi|288864998|gb|EFC97296.1| penicillin-binding protein 5 [Clostridium hathewayi DSM 13479]
Length = 277
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 75/230 (32%), Gaps = 33/230 (14%)
Query: 139 NNTSKNLGLSATHFMNAHGVVQ--------HGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
N +++LG S T+F+ +G+ H TTA D+A + P+ + +I
Sbjct: 1 NQKARDLGCSDTYFITPNGLDASREENGQMKEHSTTAADLARIMNYCIGTSPKKEEFLKI 60
Query: 191 KGLEI---------KGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
G + + N N + GA KTGFT +G++ V + G +
Sbjct: 61 TGTQSYYFTDQEGKRSYNCQNHNALLTMMSGAFSGKTGFTGGAGYSYVGALEDGGREFTI 120
Query: 242 VILGA---LDRNTRNKVSASLLSMGFYNKTDRKKINYIIKD-------------FYQQNL 285
+LG + + + L G + R+ +
Sbjct: 121 ALLGCGWPPHKTYKWSDARKLFGYGMEHYQYREVYQEKTFPEIPVENGVPRSGNPGDPVV 180
Query: 286 SNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITK 335
+ N+ EE + + + + ++ +K + +
Sbjct: 181 VHAGLNLKEEEKSLKLLMAEDEEVTVSEELPDTLEAPLKKGQTVGTVTYR 230
>gi|301301086|ref|ZP_07207246.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851356|gb|EFK79080.1| serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 129
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
S+ + +D N+G ++ E D + AS++KL+TAY++ + + T +
Sbjct: 4 SVPALTDVKSAIAVDANSGQILYETKEDEVYPVASMSKLLTAYILLDKINHHELSWNTKV 63
Query: 81 TISKNASEYPPSNSTFKKG----STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+K +E ++ + T+ + ++V SAN A+ IA ++ ++ FV+
Sbjct: 64 KPTKVEAEISHNSELTNVPLDSTHSYTIKELYQAMLVGSANAAAMVIARAVSGSQTDFVK 123
Query: 137 HMN 139
M
Sbjct: 124 LMR 126
>gi|258510359|ref|YP_003183793.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257477085|gb|ACV57404.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 402
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 48/216 (22%), Positives = 80/216 (37%), Gaps = 15/216 (6%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFL--------KEKKAMLTTPITISKNASEYPPSNSTFKK 98
P P AS+TK+MTAY+V + + S
Sbjct: 74 PQVPVPIASVTKVMTAYLVLQKHPLQLGQQGPSITITPDDV-KVYERDKALGQSVVKVAA 132
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
G +T AL+ L++ S N++ +A+ + + FVQ MN T+K LG++ TH+ + G
Sbjct: 133 GEQITEYQALEGLLLPSGNNMGTLLAKWCDGSVQAFVQEMNATAKRLGMTETHYADPTGY 192
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
M + + P + E+ +V G KT
Sbjct: 193 SPASQSDAVDQMKLFAL--AMQNPVFRQIVGEAQAELPVAGLVYNVDSVVGHGTIIGGKT 250
Query: 219 GFTCASGFNIVASAIQ--GDQS--LIAVILGALDRN 250
G T +G V +A + G++ +I +LG
Sbjct: 251 GSTLEAGGCFVFAARKVIGNREVLIIGAVLGQKGPQ 286
>gi|295114802|emb|CBL35649.1| D-alanyl-D-alanine carboxypeptidase [butyrate-producing bacterium
SM4/1]
Length = 205
Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
K N N + G G KTG+T +G +V + LIAVIL R T +
Sbjct: 3 HKMVNPNNKEYYYEGIVGGKTGYTSLAGNTLVTCVERNGTRLIAVIL--KSRQTHYADTK 60
Query: 258 SLLSMGFY 265
+LL GF
Sbjct: 61 ALLDYGFS 68
>gi|239981571|ref|ZP_04704095.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces albus J1074]
gi|291453424|ref|ZP_06592814.1| predicted protein [Streptomyces albus J1074]
gi|291356373|gb|EFE83275.1| predicted protein [Streptomyces albus J1074]
Length = 907
Score = 68.9 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 53/311 (17%), Positives = 111/311 (35%), Gaps = 31/311 (9%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-----KNASEYPPSNSTF 96
+ P S+ K+MTAY + KK +TI + S
Sbjct: 572 LGSYGEQKPIPIGSVAKVMTAYTILREHPVKKGTEGERLTIDAKAQQDYENAGQESTVKV 631
Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK-KFVQHMNNTSKNLGLSATHFMNA 155
+G +++ A++ +++ SAN+IA +A ++ FV+ MN + LG+ T + +
Sbjct: 632 TEGQKISVKEAIEAIMLPSANNIARQLARWDSDGDEAAFVEKMNKYAAELGMENTTYTDP 691
Query: 156 HGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADG 215
G+ + + + + ++ + + G++ N N+ V + G G
Sbjct: 692 SGLKETTVSSAEDQVKLGKAVMEFETFSSVVRLPNYESTTSGQREKNYNFLVPMY-GVVG 750
Query: 216 MKTGFTCASGFNIVASAIQ--GDQS--LIAVILG------ALDRNTRNKV----SASLLS 261
+KTG T +G N++ +A + + +I + G R+K + LL
Sbjct: 751 IKTGSTTKAGGNLLFAAEKVVDGEKQLIIGAVFGQHAPPILDTATARSKDLILRTQELL- 809
Query: 262 MGFYNKTDRKKINYIIK--DFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
T + + S +++V + + + H
Sbjct: 810 ------TSKPVVRKGDVVGHVDDGLGSTTPVVATKDVPAVGWPGLTVKLALDDGGKALPH 863
Query: 320 FID-FEKITLL 329
K+ +L
Sbjct: 864 EAKAGTKVGVL 874
>gi|288871041|ref|ZP_06116161.2| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
gi|288865009|gb|EFC97307.1| serine-type D-Ala-D-Ala carboxypeptidase [Clostridium hathewayi DSM
13479]
Length = 119
Score = 68.5 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
L+D TG ++ AS TK+MT + + L+ +T S+N
Sbjct: 43 LYAQSAVLMDAKTGRILYGKNEGVARPMASTTKIMTCIIALEY-----GNLSDTVTASQN 97
Query: 86 ASEYPPSNSTFKKGSTMT 103
A+ P + KG T
Sbjct: 98 AAAQPKVHLGVYKGQTFR 115
>gi|145523692|ref|XP_001447679.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124415201|emb|CAK80282.1| unnamed protein product [Paramecium tetraurelia]
Length = 458
Score = 68.5 bits (165), Expect = 2e-09, Method: Composition-based stats.
Identities = 55/278 (19%), Positives = 101/278 (36%), Gaps = 43/278 (15%)
Query: 25 TNKLPYYTLLDTNTGHV----IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT-P 79
+ + N G I AS+TK+MT Y FL+EK+ +
Sbjct: 179 KVSSKKWAIFKRNKGETKFQKIYAFQDQQKSEVASITKVMTCYTTLKFLEEKRIDMEAIR 238
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL------------ 127
I I +A +++ G M + L +++ S ND A+ ++ ++
Sbjct: 239 IKIPGHAECIDGTSAFLNAGGIMNIKQLLFAMMLPSGNDAALVLSYAIAFLKTCDNIQRY 298
Query: 128 ----------------CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
+ +F+Q MNN ++NL + T++ + HG+ + + A D+
Sbjct: 299 FNGHFIDCELEIEKNKFQLRTQFLQMMNNHAENLKMDKTNYNSVHGLNDALNVSCALDIF 358
Query: 172 ILSWRIKTDFPQY---------MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
L + +G + K+ NTN + G G+KTG T
Sbjct: 359 KLVEDCIKIKEFMEIVNTRCFKTYAMTEQGKQGTYYKWKNTNKLLKK-EGWQGIKTGITS 417
Query: 223 ASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
+G D I ++L + + R K + L+
Sbjct: 418 NAGPCFSGYYKTDDFDAIVIVLQSSNMLQRFKDAEILI 455
>gi|326777880|ref|ZP_08237145.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
cf. griseus XylebKG-1]
gi|326658213|gb|EGE43059.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Streptomyces
cf. griseus XylebKG-1]
Length = 368
Score = 68.1 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 9/212 (4%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ P AS+TK+MTAYV+ + + + A++ S+
Sbjct: 104 LGTRGEQKPVPIASVTKVMTAYVILKDHPMRADSHGATVVADRRAADESYSSVETTAPVL 163
Query: 102 MTLDNALKL----LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+ + ++V S N++A +A E+ FV MN + LG+ AT + G
Sbjct: 164 AGKEYTQRRLLELMMVPSGNNVARLLARWDAGDEEAFVAKMNRAAAGLGMRATTYTGVSG 223
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
+ T + + +K + + G + NTN +G G G+K
Sbjct: 224 MEASTRSTADDQLRLARAAMKDPVFRQVVATASVTAPGAGATFRNTNKLLGR-DGVIGLK 282
Query: 218 TGFTCASGFNIVASAIQ---GDQSLI-AVILG 245
TG + +G N+V + Q G LI V+L
Sbjct: 283 TGSSTPAGGNLVWATTQKVAGASRLILGVVLH 314
>gi|311893558|dbj|BAJ25966.1| putative peptidase S11 family protein [Kitasatospora setae KM-6054]
Length = 316
Score = 67.7 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 9/204 (4%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS----KNASEYPPSNSTFKKGSTMTL 104
P AS+TK+MTAYV+ + I + + + S + ++G +T
Sbjct: 60 TPVPIASVTKVMTAYVILRGHPLEDGGQGPRIGVDAAAARESFAPGESTAQLREGQDLTE 119
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
L+L+++ S N++A +A +++ FV MN + LG++ T + A G+ +
Sbjct: 120 RQLLELMLLPSGNNVARLLARWDSGSQEAFVVKMNRAALELGMTRTTYTGASGLEESTRS 179
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
T + + + + + + + NTN +G G G+KTG T A+
Sbjct: 180 TAEDQIRLARAAMGLPVLREVVGMRETTVAGVPGTVVNTNTLLGR-DGVIGLKTGSTTAA 238
Query: 225 GFNIVASAIQ---GDQSLI-AVIL 244
G N++ +A G L+ V+L
Sbjct: 239 GGNLMWAAEVRAGGGVRLVLGVVL 262
>gi|237800748|ref|ZP_04589209.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331023606|gb|EGI03663.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 118
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET--------------NKLPYYTLLDTNTGHVIAENY 46
M+ L ++ + + F + A ++D T V+ +
Sbjct: 1 MKIRLSVLGLLCVLTGPVFTTPAFANETAALNRDPSNLHLASGSALVVDLQTDKVLYSSN 60
Query: 47 PDHPWNPASLTKLMTAYVVFSFLK 70
PD AS+TKLMTA VV +
Sbjct: 61 PDVIVPIASVTKLMTAMVVLDAKQ 84
>gi|182437259|ref|YP_001824978.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|178465775|dbj|BAG20295.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
subsp. griseus NBRC 13350]
Length = 323
Score = 67.7 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 9/212 (4%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ P AS+TK+MTAYV+ + + + A++ S+
Sbjct: 59 LGTRGEQKPVPIASVTKVMTAYVILKGHPMRADSHGATVVADRRAADESYSSVETTAPVL 118
Query: 102 MTLDNALKL----LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+ + ++V S N++A +A E+ FV MN + LG+ AT + G
Sbjct: 119 AGKEYTQRRLLELMMVPSGNNVARLLARWDAGDEEAFVAKMNRAAAGLGMRATTYTGVSG 178
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
+ T + + +K + + G + NTN +G G G+K
Sbjct: 179 METSTRSTADDQLRLARAAMKDPVFRQVVATASVTAPGAGATFRNTNKLLGR-DGVIGLK 237
Query: 218 TGFTCASGFNIVASAIQ---GDQSLI-AVILG 245
TG + +G N+V + Q G LI V+L
Sbjct: 238 TGSSTPAGGNLVWATTQKVAGASRLILGVVLH 269
>gi|218288202|ref|ZP_03492501.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Alicyclobacillus acidocaldarius LAA1]
gi|218241561|gb|EED08734.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
[Alicyclobacillus acidocaldarius LAA1]
Length = 402
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 53/311 (17%), Positives = 96/311 (30%), Gaps = 32/311 (10%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFL--------KEKKAMLTTPITISKNASEYPPSNSTFKK 98
P AS+TK+MTAY+V + + S
Sbjct: 74 PQVSVPIASVTKVMTAYLVLQKHPLQLGQQGPSITITPDDV-KVYERDKALGQSVVKVAA 132
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
G +T AL+ L++ S N++ +A+ + + FVQ MN T+K LG++ TH+ + G
Sbjct: 133 GEKITEYQALQGLLLPSGNNMGTLLAKWCDGSVQAFVQEMNATAKRLGMTETHYADPTGY 192
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
M + + + P + E+ +V G KT
Sbjct: 193 SPASQSDAVDQMKLFAL--AMENPVFRQIVGEAQAELPVAGLVYNVDSVVGHGTIIGGKT 250
Query: 219 GFTCASGFNIVASAIQ--GDQS--LIAVILGALDRN----------TRNKVSASLLSMGF 264
G T +G V +A + G + +I +LG T ++ + L
Sbjct: 251 GSTLEAGGCFVFAARKVIGSREVLIIGAVLGQKGPQPLAEALNSAVTMSQDAQKAL---- 306
Query: 265 YNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFE 324
+ I+ + ++ Q D E
Sbjct: 307 ---QSVQLISAGQTVGTLSAPWAKPVSLVATEPVQVIGWGGLPVQQSYRADVLDPKKPIE 363
Query: 325 KITLLKNKITK 335
++ +
Sbjct: 364 PNQVVGQLQIQ 374
>gi|116630239|ref|YP_815411.1| hypothetical protein LGAS_1684 [Lactobacillus gasseri ATCC 33323]
gi|116095821|gb|ABJ60973.1| hypothetical protein LGAS_1684 [Lactobacillus gasseri ATCC 33323]
Length = 446
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 63/190 (33%), Gaps = 19/190 (10%)
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTNWA------VGT 209
+ +A D AI+ + +PQ ++ ++ N NW
Sbjct: 32 DAENTLSASDRAIIISHLLKKYPQVLNTTKVAKSSFVDGKTITPMQNWNWMLKGLSQYDP 91
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFY 265
DG+KTG T A+G ++ + + L+ V++GA N +R + LL F
Sbjct: 92 NYPVDGLKTGTTDAAGACFASTMKKNGRRLVTVVMGAQHANGEDPSRFIQTKKLLKYIFD 151
Query: 266 NKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ-----MKEAKDKESHF 320
N + +K ++ S V + ++ + +K K +
Sbjct: 152 NYSSKKIKQGFSFASVRRVKVINGKEKSAPVYVKEPTVVWLPKKQQLSNLKVKFSKNAIH 211
Query: 321 IDFEKITLLK 330
+
Sbjct: 212 APQISGKTVG 221
>gi|218660191|ref|ZP_03516121.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli IE4771]
Length = 83
Score = 67.3 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
K +++ +TG V+ D ++PASL KLMT +VF + + + L T +S+
Sbjct: 19 TKAAQAYMIEASTGTVLLAKNEDQGFSPASLAKLMTMNLVFDAVTKGQITLDTEYPVSEY 78
Query: 86 ASEY 89
A
Sbjct: 79 AWRT 82
>gi|195940744|ref|ZP_03086126.1| D-alanyl-D-alanine carboxypeptidase fraction A [Escherichia coli
O157:H7 str. EC4024]
Length = 141
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 12/99 (12%), Positives = 29/99 (29%), Gaps = 4/99 (4%)
Query: 238 SLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNIS 293
LI+ ++G R S LL+ GF + + + + +
Sbjct: 1 RLISAVMGGRTFKGREAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVD 60
Query: 294 EEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
++V T + + + +K ++
Sbjct: 61 KDVYLTIPRGRMKDLKASYVLNSSELHAPLQKNQVVGTI 99
>gi|311110174|ref|ZP_07711571.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Lactobacillus gasseri
MV-22]
gi|311065328|gb|EFQ45668.1| ErfK/YbiS/YcfS/YnhG superfamily protein [Lactobacillus gasseri
MV-22]
Length = 431
Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 61/190 (32%), Gaps = 19/190 (10%)
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI----KGKKYPNTNWA------VGT 209
+ +A D AI+ + +PQ ++ ++ N NW
Sbjct: 17 DAENTLSASDRAIIISHLLKKYPQVLNTTKVAKSSFVDGKTITPMQNWNWMLKGLSQYDP 76
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFY 265
DG+KTG T A+G ++ + + L+ V++GA N +R + LL F
Sbjct: 77 NYPVDGLKTGTTDAAGACFASTMKKNGRRLVTVVMGAQHANGEDPSRFIQTKKLLKYIFD 136
Query: 266 NKTDRKK-----INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHF 320
N + +K + + P +E + +K K +
Sbjct: 137 NYSSKKIKQGFSFASVRRVKVINGKEKSAPVYVKEPTVVWLPKKQQLSNLKVKFSKNAIH 196
Query: 321 IDFEKITLLK 330
+
Sbjct: 197 APQISGKTVG 206
>gi|218674624|ref|ZP_03524293.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhizobium etli GR56]
Length = 248
Score = 66.5 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 56/139 (40%), Gaps = 4/139 (2%)
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F +GK N + + G DG+ TG+T ASGFN+V++ G++ ++ V+L
Sbjct: 2 YRLFSAASFNFRGKTVRGHNNLMYRYQGMDGINTGYTNASGFNLVSAVRDGNRRVVGVVL 61
Query: 245 GALDRNTRNKVSASLLSMGFYNKTD----RKKINYIIKDFYQQNLSNEVPNISEEVCTTQ 300
G +R+ A+LL + R + K+ + + + ++ + +
Sbjct: 62 GGRTARSRDAKMAALLDRYLGRASSSGGARLVASVGAKEAVEVASAADASDVPVPLNAPR 121
Query: 301 KEIINYNTQMKEAKDKESH 319
+ + A D
Sbjct: 122 PADDLASKSLAYADDAVVP 140
>gi|331084015|ref|ZP_08333122.1| hypothetical protein HMPREF0992_02046 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330402377|gb|EGG81947.1| hypothetical protein HMPREF0992_02046 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 316
Score = 66.5 bits (160), Expect = 5e-09, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 86/240 (35%), Gaps = 23/240 (9%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI--SKNASEYPPSNSTF 96
G + N+ P +T+LMTA + + L I
Sbjct: 79 GTIPFSNHLYEKIEPGKVTQLMTALLAVE-----RLNLEDEAVIEGDDRVYGKEARGCGL 133
Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
++G +T+ L ++V SA D A+A +++ FV MN + LG++ TH+ N+
Sbjct: 134 QEGYHVTVKQLLNAVLVSSAEDACQALARLTGGSQEAFVTLMNERATELGMTNTHYANST 193
Query: 157 GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG---- 212
G YTT D+ +L +P ++ + I +
Sbjct: 194 GYTSDEQYTTVYDIYLLLNEFL-KYPDLLNAMSLPDYTINYTTPKDELKQRWLDSDNPFT 252
Query: 213 -----------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
G KT + ++ + + + + + I+++ A + + + +LS
Sbjct: 253 AGKVTIPKDVTVLGGKTFTSKSNNYAALLTQNKYGEFYISIVFHAETESALMERMSEMLS 312
>gi|328887221|emb|CCA60460.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC
10712]
Length = 315
Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats.
Identities = 46/205 (22%), Positives = 85/205 (41%), Gaps = 10/205 (4%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP----SNSTFKKGSTMTL 104
P ASLTK+MTA+V+ K I + + A+ S + G +
Sbjct: 80 RPVPIASLTKVMTAHVILEEHPLKPGESGPMIEVDRQAAYEVGVGGESTVPLQAGRRYSQ 139
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
L++L++ S N++A +A T++ F + M T+ LG+ + + A G+ +
Sbjct: 140 RQLLEMLLIPSGNNVARLLARWDSGTQEAFAEKMQRTAGGLGMKDSTYTGASGI-EVTTT 198
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
+TA D L+ + + NTN + T G G+KTG + +
Sbjct: 199 STAADQLALARKAMKNAVFREIVGTRSVTVPGVGTITNTNPLLDT-PGVVGIKTGSSTPA 257
Query: 225 GFNIVAS--AIQGD--QSLIAVILG 245
G N++ + G + L+ ++
Sbjct: 258 GGNLLWACEVRVGGATRLLVGAVMH 282
>gi|94958259|gb|ABF47261.1| penicillin binding protein 4-like protein [Staphylococcus xylosus]
Length = 326
Score = 65.8 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 52/254 (20%), Positives = 96/254 (37%), Gaps = 28/254 (11%)
Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
G T T+ L++ + S+N A+ + + + F MN +K LG+ THF+N
Sbjct: 13 YPGETYTVKELLQITVSNSSNAAALILGKEVSGNLSDFTDKMNKKAKALGMENTHFVNPT 72
Query: 157 GVVQHG--------------HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
G H + +TA+D ILS R+ D P+ + + + Y
Sbjct: 73 GAENHQLRDFVPKKYKSENDNTSTAKDFGILSQRVVQDTPKILDFTKQLAPTQHSVTYYT 132
Query: 203 TNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LDRNTR 252
N + + G DG+KTG + + +N + + + I+GA R
Sbjct: 133 FNHSLEGADMSLEGTDGLKTGSSDVADYNHTITTKRDGFRINQAIMGAGNYDKLGGEKQR 192
Query: 253 NKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKE 312
N + +L++M F K ++ + + E + K+ + ++
Sbjct: 193 NMMGNALMNMSFDQYKYEKILSKGEQKINGKTYFVE----KDLYDVLPKDFDKKDYKVVI 248
Query: 313 AKDKESHFIDFEKI 326
+K D E I
Sbjct: 249 EDNKAHIEYDREFI 262
>gi|329934220|ref|ZP_08284299.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
griseoaurantiacus M045]
gi|329305816|gb|EGG49671.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
griseoaurantiacus M045]
Length = 341
Score = 65.8 bits (158), Expect = 9e-09, Method: Composition-based stats.
Identities = 55/267 (20%), Positives = 112/267 (41%), Gaps = 27/267 (10%)
Query: 5 LVIIAMAMLSNIFPFLSIAETN----KLPYYTLL-------DTNTGHVIAENYPDHPWNP 53
L ++A+A+L++ + A + + ++ D T P
Sbjct: 51 LAVLAVAVLTSGNSPGAGAGSLPWPPEGQTSVVVEGLGAHGDLGT------RGERTPVPI 104
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISK----NASEYPPSNSTFKKGSTMTLDNALK 109
AS+TK+MTA+V+ + +T+ + + S+ ++G+ ++ L+
Sbjct: 105 ASVTKVMTAWVILRDRPLRAGEDGPLVTVDRTAANESFSGVESSVPVREGTRLSERRLLE 164
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
LL++ S N+IA +A +++ FV MN +++LG+ T + A G+ T+A
Sbjct: 165 LLLIPSGNNIARLLARWNAGSQEAFVMKMNRAARDLGMRHTTYTGASGIEPTTTSTSADQ 224
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
+ + + + + + + NTN +GT G G+KTG + +G ++
Sbjct: 225 LRLARRVMHDEVFRTVVAMPGTTVPGVPGTIRNTNTLLGT-AGVIGLKTGSSTPAGGALM 283
Query: 230 ASA---IQGDQ-SLI-AVILGALDRNT 251
+A G + LI V+L
Sbjct: 284 WAATASDNGGRDRLILGVVLHQRSGTD 310
>gi|170782312|ref|YP_001710645.1| putative carboxypeptidase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169156881|emb|CAQ02049.1| putative carboxypeptidase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 404
Score = 65.8 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/261 (20%), Positives = 92/261 (35%), Gaps = 18/261 (6%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD-HPWNPASLTKLMTAYVVFSFLK 70
+++ P A+ D V+A N AS+TK +TA VV
Sbjct: 45 VVNVPTPESWPADGVSAVGAIGFDG----VLATNEAAPVSRPMASITKTVTALVVLEAKP 100
Query: 71 EKKAMLTTPITISKNAS-------EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+T + + G++++ + L+ ++ SAN+ A A+
Sbjct: 101 LAPGEDGPQVTFTAEDEALRGEILKQDGIVEPAVPGTSLSQRDLLEGALLASANNYAAAL 160
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
+ FV N + GL+ TH +A G+ +T D+ + + D
Sbjct: 161 GVWAYGSNDAFVAAANAWLADQGLTGTHVADAMGL-SPETVSTTADLVRIGEMVLADPVL 219
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI--QGDQ--SL 239
Q N N G G+KTG +G ++ + GD+ +L
Sbjct: 220 SGIVDQRSADVAGVGTVENRNMLADV-PGFRGIKTGTLEQAGKCLLWAVDTKVGDRDVTL 278
Query: 240 IAVILGALDRNTRNKVSASLL 260
+ V LGA D + +LL
Sbjct: 279 VGVTLGARDHAELARQVTALL 299
>gi|256394922|ref|YP_003116486.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora
acidiphila DSM 44928]
gi|256361148|gb|ACU74645.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Catenulispora
acidiphila DSM 44928]
Length = 311
Score = 65.4 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 90/240 (37%), Gaps = 17/240 (7%)
Query: 37 NTGHVIAENYPDHPW-NPASLTKLMTAYVVFSFLKEKKAM-------LTTPITISKNASE 88
TG + P+ AS+TK+MTAY+V + + +
Sbjct: 69 ETGQSRVQAGPNQHAAPIASVTKVMTAYLVLRDHPLRAGQDGPALTLTDADVADTAQRRS 128
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
S G +T AL+ L++ SAN+IAV +A + +FV MN T+++LG+
Sbjct: 129 QDQSIVPVAAGEHLTERQALQALLLPSANNIAVVLARWDAGSVDQFVARMNATAQSLGMR 188
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
T + + G + T + I++ P + + + +
Sbjct: 189 DTRYTDPSGFDEATVSTAVDQVQIVAR--AMRLPVFADIVAMPSAALPVAGTVANTDTLV 246
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQ----GDQSLIAVILGALDRNTRNK---VSASLLS 261
G G+KTG A+G A++ ++ V+LG N + +L+
Sbjct: 247 GHDGFVGVKTGSDDAAGGCFAFQAVRTIGGKQTTITGVVLGQPGANQIAAGLMAAKALVD 306
>gi|323359495|ref|YP_004225891.1| D-alanyl-D-alanine carboxypeptidase [Microbacterium testaceum
StLB037]
gi|323275866|dbj|BAJ76011.1| D-alanyl-D-alanine carboxypeptidase [Microbacterium testaceum
StLB037]
Length = 405
Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 57/339 (16%), Positives = 109/339 (32%), Gaps = 29/339 (8%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGH-------VIAENYPDHPWNPASLTKLMTAYVVFS 67
+I P + + L+ G V + D AS++KL+TA VV
Sbjct: 36 SISPGAAASVALPSSGSMLVTVQGGGTYLGADPVTWSSGGDDARPIASISKLVTALVVLD 95
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI-------- 119
A P A + + + + KL + + +
Sbjct: 96 AHPLADANDPGPTIAFAEADTDLYDQFYVRGATIARMPDGAKLSLHDALATMLLPSASNY 155
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
AVA+A +E +V + GL+AT ++A G+ T + +A+ +
Sbjct: 156 AVAVARWAFGSEGAYVDAARSWLTKNGLNATRIVDATGIDDRNTSTPSDLVALGTLAAAN 215
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG---- 235
+ L NTN +GT G G+KTG FN++ +++
Sbjct: 216 PAIAAIAATPWVNLPAGPGNIENTNVLLGT-SGITGLKTGNLGDGTFNLLFTSVLDVGIG 274
Query: 236 -DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK----DFYQQNLSNEVP 290
++ + LG R + N+ LL + + + + V
Sbjct: 275 APLHVLGIRLGGETRASANQDVVVLLESIRDGFHTIQVGTSGAEIGKITTPWGSSAKVVV 334
Query: 291 NISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
+ + T + + + + D EK+ +
Sbjct: 335 GQNASIMTWSDTAVTTHLDTTTPEK----YADGEKVGTI 369
>gi|226323179|ref|ZP_03798697.1| hypothetical protein COPCOM_00951 [Coprococcus comes ATCC 27758]
gi|225208369|gb|EEG90723.1| hypothetical protein COPCOM_00951 [Coprococcus comes ATCC 27758]
Length = 196
Score = 65.0 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
L+D ++G V+ AS TK+MT + K
Sbjct: 110 LYARSAALVDADSGRVLLGKEEHVMRPMASTTKIMTCILALEKGNPKDL 158
>gi|328480202|gb|EGF49133.1| D-alanyl-D-alanine carboxypeptidase [Lactobacillus rhamnosus MTCC
5462]
Length = 180
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 14/130 (10%)
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALD--RNTRNKVSASLLSMGFYNKTDRKKIN 274
KTG + A+G + + +I V+L A + R + L++ N N
Sbjct: 2 KTGTSDAAGDCFTGTVEKNGMRIITVVLHANGDAKTRRFDETKKLMTHVLENWKTITLAN 61
Query: 275 YIIKDFYQQNLSNE---------VPNISEEVCTT---QKEIINYNTQMKEAKDKESHFID 322
++ P+ K+ + Y + K +
Sbjct: 62 AGQSIKGYSKVNVNRGASRTTPIAPSAKAVAVVPADASKKTLKYTYTPAKGVKKNTIEAP 121
Query: 323 FEKITLLKNK 332
+K T + N
Sbjct: 122 VKKGTTIGNL 131
>gi|254445424|ref|ZP_05058900.1| FG-GAP repeat domain protein [Verrucomicrobiae bacterium DG1235]
gi|198259732|gb|EDY84040.1| FG-GAP repeat domain protein [Verrucomicrobiae bacterium DG1235]
Length = 1459
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 53/340 (15%), Positives = 98/340 (28%), Gaps = 65/340 (19%)
Query: 42 IAENYPD-HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN------- 93
+ + AS+TK MT + L+ + LT + +S+ A S
Sbjct: 1058 LYGKDEHLEERHAASVTKCMTLLLAVEALENGQTELTRMVGVSELAGTNKGSRLLTYNDF 1117
Query: 94 ------------STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK----TEKKFVQH 137
+ G M L + ++ +S N ++AIA+ + + +F+
Sbjct: 1118 GSEIKDDNGDPIYFIQPGDLMPLRLLIAAMMNESCNRSSIAIAQHIAEVVTGDPDRFIIM 1177
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM-----------AILSWRIKTDFPQYMH 186
MN+ + L + T F G G T +D+ + + + +
Sbjct: 1178 MNDKAAELEMHDTVF----GQPAGGMVTRPQDLITLLLEGSKHPQFVEFGGIARYGEEAP 1233
Query: 187 YFQIKGLEIKGKKYPN----TNWAVGTFLGADGMKTGFTCASGFNIVAS----------- 231
+ + G G N +G + G K G A
Sbjct: 1234 HDALCGTWNTGDPKCNGPFSKFNTIGNYPGRQMWKGGNIGFWWSGDEAIDVPPRPPGIPY 1293
Query: 232 --------AIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
A + + + IL + N R + S L GF
Sbjct: 1294 STASAVGIAKRAGRDIAIAILQTNNAN-RTEDSQKLFDYGFRKLFTPDLRGSTEYPESGG 1352
Query: 284 NLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ E + + + T + D E+ ID
Sbjct: 1353 LVGAEDQVRVKNFALDRITADSAVTAI--IDDFENIQIDI 1390
>gi|255521429|ref|ZP_05388666.1| D-alanyl-D-alanine carboxypeptidase [Listeria monocytogenes FSL
J1-175]
Length = 99
Score = 65.0 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
KG K +TN ++G+ G DG+KTGFT +G+ + +A +G + +I+++L A R
Sbjct: 26 TDKGAKLESTNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRF 85
Query: 254 KVSASLLSMGFY 265
K + L+ +GF
Sbjct: 86 KDTEKLMEVGFK 97
>gi|148272890|ref|YP_001222451.1| D-alanyl-D-alanine carboxypeptidase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830820|emb|CAN01761.1| probable D-alanyl-D-alanine carboxypeptidase [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 404
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 53/261 (20%), Positives = 91/261 (34%), Gaps = 18/261 (6%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD-HPWNPASLTKLMTAYVVFSFLK 70
+++ P + D V+A N AS+TK +TA VV
Sbjct: 45 VVAVPTPESWPGDGVSAVGAIGFDG----VLATNEATPVSRPMASITKTVTALVVLKAKP 100
Query: 71 EKKAMLTTPITISKNAS-------EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+T + + G++++ + L+ ++ SAN+ A A+
Sbjct: 101 LAPGEDGPQVTFTAEDEALRGEILKQDGIVEPAVAGTSLSQRDLLEGALLASANNYAAAL 160
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
+ FV N GL+ TH +A G+ +T D+ + + D
Sbjct: 161 GVWAYGSNDAFVAAANAWLAEQGLTGTHVADAMGL-SPETVSTTADLVRIGEMVLADPVL 219
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI--QGDQ--SL 239
Q N N G G G+KTG +G ++ + GD+ +L
Sbjct: 220 SGIVDQRSADVAGVGTVENRNLLAGV-PGFRGIKTGTLEQAGKCLLWAVDTKVGDRDVTL 278
Query: 240 IAVILGALDRNTRNKVSASLL 260
+ V LGA D + +LL
Sbjct: 279 VGVTLGAKDHAELARQVTALL 299
>gi|282852867|ref|ZP_06262208.1| ErfK/YbiS/YcfS/YnhG [Lactobacillus gasseri 224-1]
gi|282555975|gb|EFB61596.1| ErfK/YbiS/YcfS/YnhG [Lactobacillus gasseri 224-1]
Length = 365
Score = 64.6 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 9/134 (6%)
Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLS 261
DG+KTG T A+G ++ + + L+ V++GA N +R + LL
Sbjct: 7 QYDPNYPVDGLKTGTTDAAGACFASTMKKNGRRLVTVVMGAQHANGEDPSRFIQTKKLLK 66
Query: 262 MGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQ-----MKEAKDK 316
F N + +K ++ S V + ++ + +K K
Sbjct: 67 YIFDNYSSKKIKQGFSFASVRRVKVINGKEKSAPVYVKEPTVVWLPKKQQLSNLKVKFSK 126
Query: 317 ESHFIDFEKITLLK 330
+ +
Sbjct: 127 NAIHAPQISGKTVG 140
>gi|255024934|ref|ZP_05296920.1| beta-lactamase [Listeria monocytogenes FSL J1-208]
Length = 135
Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 36/95 (37%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ G+ + E D ASL+KLMTA++V + + + + +
Sbjct: 29 LSADAAAVYSVENGNPLYEQNADKVMPIASLSKLMTAFLVLEAVDNNELAWDETLDLVRL 88
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
S + T ++ + ++ SAND A
Sbjct: 89 DDPSAVSLYAITQKRTWSVRDLYSAMLTMSANDAA 123
>gi|227511783|ref|ZP_03941832.1| possible VGP family vectorial glycosyl polymerization protein
[Lactobacillus buchneri ATCC 11577]
gi|227084985|gb|EEI20297.1| possible VGP family vectorial glycosyl polymerization protein
[Lactobacillus buchneri ATCC 11577]
Length = 504
Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
F+ I + + + + K ++D +G ++ + DH ASL+KLMT Y
Sbjct: 37 FVGTILTSSIVIRAKVKNPQYSFKAKEIYVMDAKSGQMLYQKNEDHERPIASLSKLMTLY 96
Query: 64 VV 65
+
Sbjct: 97 LA 98
>gi|297200368|ref|ZP_06917765.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
29083]
gi|297147640|gb|EDY53521.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces sviceus ATCC
29083]
Length = 813
Score = 64.2 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 77/363 (21%), Positives = 135/363 (37%), Gaps = 36/363 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDT--------NTGHVIAENYP-------- 47
L+++A A++ ++ P + + D G +
Sbjct: 426 ILLVVAFAIVQSVRPLPNPTLSLTAEDSYTFDGSKATLPWPTQGQGWMDVNGIGTMGDFG 485
Query: 48 -DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST-------FKKG 99
P S+ K MTAY+V K IT+ A + N K G
Sbjct: 486 KQTPVAIGSVAKAMTAYIVLKDHPLKSGEEGAKITVDALAEKEGGYNKQGESTLNTVKNG 545
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+T A+ +++ SAN+IA +A +E F++ MN+T+K LG+ T + +A G+
Sbjct: 546 DVLTQRQAIAAIMIPSANNIARLLARWDSGSEAAFIKKMNDTAKELGMKNTTYTDASGLK 605
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ +TA D L + + ++ G+K+ N N+ V + G G+KTG
Sbjct: 606 EST-VSTAEDQVKLGNELVKIPALMEITSMGQWIDPSGQKWYNYNYLV-PYTGI-GIKTG 662
Query: 220 FTCASGFNIVASAIQ--GDQSLIAV--ILG---ALDRNTRNKVSASLLSMGFYNKTDRKK 272
T A+G N++ +A + G +++ V ILG A T N VS L K
Sbjct: 663 TTSAAGGNLLFAARKKVGGETVTVVGAILGQHKAPIIKTVNDVSKVALLAAEDALKSAKI 722
Query: 273 INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
+ Y + + T + ++ A D H + T + +
Sbjct: 723 LKKGDVVGYVDDGLGGHTPVVLTKDVTAVGWAGFKVKLSFAADDVPHTA--KAGTKVGSL 780
Query: 333 ITK 335
Sbjct: 781 TVG 783
>gi|298345799|ref|YP_003718486.1| hypothetical protein HMPREF0573_10673 [Mobiluncus curtisii ATCC
43063]
gi|304390497|ref|ZP_07372450.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315657704|ref|ZP_07910585.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|298235860|gb|ADI66992.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063]
gi|304326253|gb|EFL93498.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315491707|gb|EFU81317.1| conserved hypothetical protein [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 305
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/304 (18%), Positives = 95/304 (31%), Gaps = 51/304 (16%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAET----------------------NKLPYYTLLDTNTG 39
R+ + + ++ IF ++ Y ++D +
Sbjct: 5 RKKMTAVFAVVVIAIFAWVVATPAGRGVIRVWIYPKPTTVGIDGTPYTGKGYVVIDEASQ 64
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPSNSTFK 97
IA + PASL KL A A +++S+ P S+
Sbjct: 65 QRIAAAGENTEITPASLAKLFVAEYAL-----AVADPNDEVSVSREALTKAKPGSSLAGI 119
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESL-----------CKTEKKFVQHMNNTSKNLG 146
T L + L ++V S ND A A+AE + F+ + K G
Sbjct: 120 VPGTYRLQDLLAAMLVPSGNDAAYAVAEFCGGKTHPGTAGTDQRIDLFMTDLAEYLKKQG 179
Query: 147 LSATHFMNAHGVVQHGHYTT----ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
S T + G T A +LS + D + + I L + N
Sbjct: 180 WSHTRINDPSGYDPRAVSTPSEIAAVSEKLLSRQWIRDIVKS-QRYAIAPLSGQHLMMVN 238
Query: 203 TNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
TN + G+KTG + A + + V LG+ + +R
Sbjct: 239 TNQMLNPESIYYIPEVAGLKTGSLGKIHNLAILYA-KSGHDYLIVSLGSTSKASRYDDLN 297
Query: 258 SLLS 261
+L+S
Sbjct: 298 NLIS 301
>gi|315654470|ref|ZP_07907377.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
gi|315491223|gb|EFU80841.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333]
Length = 305
Score = 64.2 bits (154), Expect = 3e-08, Method: Composition-based stats.
Identities = 53/303 (17%), Positives = 90/303 (29%), Gaps = 49/303 (16%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAET----------------------NKLPYYTLLDTNTG 39
R+ + + ++ IF ++ Y ++D +
Sbjct: 5 RKKMTAVFAVVVIAIFAWVVATPAGRGVIRVWIYPKPTTVGIDGTPYTGKGYVVIDEASQ 64
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPSNSTFK 97
IA + PASL KL A A +++S+ P S+
Sbjct: 65 QRIAAAGENTEITPASLAKLFVAEYAL-----AVADPNDEVSVSREALTKAKPGSSLAGI 119
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESL-----------CKTEKKFVQHMNNTSKNLG 146
T L + L ++V S ND A A+AE + F+ + K G
Sbjct: 120 VPGTYRLQDLLAAMLVPSGNDAAYAVAEFCGGKTHPGTAGTDQRIDLFMTDLAEYLKKQG 179
Query: 147 LSATHFMNAHGVVQHGHYTT----ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
S T + G T A +LS + D + Y
Sbjct: 180 WSHTRINDPSGYDPRAVSTPSEIAAVSEKLLSRQWIRDIVKSQRYAIAPLSGQHLMMVNT 239
Query: 203 T---NWAVGTF-LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
N + G+KTG + A + + V LG+ + +R +
Sbjct: 240 NQMLNPQSIYYIPEVAGLKTGSLGKIHNLAILYA-KSGHDYLIVSLGSTSKASRYDDLNN 298
Query: 259 LLS 261
L+S
Sbjct: 299 LIS 301
>gi|260587695|ref|ZP_05853608.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
20583]
gi|260541960|gb|EEX22529.1| serine-type D-Ala-D-Ala carboxypeptidase [Blautia hansenii DSM
20583]
Length = 334
Score = 63.8 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 86/240 (35%), Gaps = 23/240 (9%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI--SKNASEYPPSNSTF 96
G + N+ P +T+LMTA + + L I
Sbjct: 97 GTIPFSNHLYEKTEPGKVTQLMTALLAVE-----RLNLEDEAVIEGDDRVYGKEARGCGL 151
Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
++G +T+ L ++V SA D A+A +++ FV MN + LG++ TH+ N+
Sbjct: 152 QEGYHVTVKQLLNAVLVSSAEDACQALARLTGGSQEAFVTLMNERATELGMTNTHYANST 211
Query: 157 GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG---- 212
G YTT D+ +L +P ++ + I +
Sbjct: 212 GYTSDEQYTTVYDIYLLLNEFL-KYPDLLNAMSLPDYTINYTTPKDELKQRWLDSDNPFT 270
Query: 213 -----------ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
G KT + ++ + + + + + I+++ A + + + +LS
Sbjct: 271 AGKVTIPKDVTVLGGKTFTSKSNNYAALLTQNKYGEFYISIVFHAETESALMERMSEMLS 330
>gi|269976579|ref|ZP_06183564.1| putative D-alanyl-D-alanine carboxypeptidase [Mobiluncus mulieris
28-1]
gi|269935380|gb|EEZ91929.1| putative D-alanyl-D-alanine carboxypeptidase [Mobiluncus mulieris
28-1]
Length = 305
Score = 63.8 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/304 (18%), Positives = 95/304 (31%), Gaps = 51/304 (16%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAET----------------------NKLPYYTLLDTNTG 39
R+ + + ++ IF ++ Y ++D +
Sbjct: 5 RKKMTAVFAVVVIAIFAWVVATPAGRGVIRVWIYPKPTTVGIDGTPYTGKGYVVIDEASQ 64
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPSNSTFK 97
IA + PASL KL A A +++S+ P S+
Sbjct: 65 QRIAAAGENTEITPASLAKLFVAEYAL-----AVADPNDEVSVSREALTKAKPGSSLAGI 119
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESL-----------CKTEKKFVQHMNNTSKNLG 146
T L + L ++V S ND A A+AE + F+ + K G
Sbjct: 120 VPGTYRLQDLLAAMLVPSGNDAAYAVAEFCGGKTHPGTAGTDQRIDLFMTDLAEYLKKQG 179
Query: 147 LSATHFMNAHGVVQHGHYTT----ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
S T + G T A +LS + D + ++I L + N
Sbjct: 180 WSHTRINDPSGYDPRAVSTPSEIAAVSEKLLSRQWIRDIVKS-QRYEIAPLSGQHLMMVN 238
Query: 203 TNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
TN + G+KTG + A + + V LG+ +R
Sbjct: 239 TNQMLNPESIYYIPEVAGLKTGSLGKIHNLAILYA-KSGHDYLIVSLGSTSEASRYDDLN 297
Query: 258 SLLS 261
+L+S
Sbjct: 298 NLIS 301
>gi|118369246|ref|XP_001017828.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila]
gi|89299595|gb|EAR97583.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila SB210]
Length = 978
Score = 63.8 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/170 (17%), Positives = 56/170 (32%), Gaps = 31/170 (18%)
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ K FV+ MN ++ L + T + N HG+ G+ ++A D L + + F +
Sbjct: 311 QENMKFFVKIMNQEAQKLQMRNTQYSNPHGLSDKGNKSSAIDYGRLCYAAMSSFALFRQV 370
Query: 188 FQIK-------------------------------GLEIKGKKYPNTNWAVGTFLGADGM 216
+ ++ ++ NTN + G+
Sbjct: 371 VKTPLYSCKILLNKDLIQNKKNSLQTPTNQNKTLSVQTMRNAQWENTNKLLLRNSHFIGI 430
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
KTG T +G + + + ++L D R S L +
Sbjct: 431 KTGNTPNAGPCLATHYQKNGIDIQVIVLKCKDSEKRWVDSQKLAEWAYQQ 480
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 3/126 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYV 64
L I + + + + N +I ASLTK+MT +
Sbjct: 52 LYIASASNSYLSQLLCNNTPLTSALSAAVYCQN--RLIYNKNGSEALEIASLTKVMTFFT 109
Query: 65 VFSFLKEKKAMLTTPI-TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + + + K A+ +++ + G + L + L++ S ND A +
Sbjct: 110 SLKLSAKHELDPQSVYVRVPKAAAFICGTSACLRNGEYIKLCDLFYALMLPSGNDAACTL 169
Query: 124 AESLCK 129
A +
Sbjct: 170 ANFFGQ 175
>gi|294629898|ref|ZP_06708458.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
gi|292833231|gb|EFF91580.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
Length = 877
Score = 63.8 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 13/210 (6%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN-------STFKKG 99
P S+ K MTAY++ K I + A + + +T K G
Sbjct: 548 EQKPAAIGSVAKTMTAYIILRDHPLKPGEEGPKIKVDATAEKEGGYDKGGESTLNTVKAG 607
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+T AL +++ SAN+IA +A +E FV+ MN T+K LG++ T + + G+
Sbjct: 608 DFLTEKQALSAVMIPSANNIARLLARWDAGSEAAFVEKMNATAKELGMTRTTYTDPSGLK 667
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ +TA+D L + + + G+ +PN N +GA G+KTG
Sbjct: 668 ETT-VSTAQDQVKLGNAVVKNPALVAITSAASWTDPSGRNWPNYNSLPYW-IGAIGIKTG 725
Query: 220 FTCASGFNIVASAIQ--GDQSLIAV--ILG 245
T A+G N++ +A + G Q++ V ILG
Sbjct: 726 TTTAAGGNLLFAARKKVGGQTVTVVGAILG 755
>gi|227874829|ref|ZP_03992982.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
gi|227844604|gb|EEJ54760.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35243]
Length = 305
Score = 63.8 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 55/304 (18%), Positives = 93/304 (30%), Gaps = 51/304 (16%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAET----------------------NKLPYYTLLDTNTG 39
R+ + + ++ F ++ Y ++D +
Sbjct: 5 RKKMTAVFAVVVIAFFAWVVATPAGRGVIRVWIYPKPTTVGIDGTPYTGKGYVVIDEASQ 64
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPSNSTFK 97
IA + PASL KL A A +++S+ P S+
Sbjct: 65 QRIAAAGENTEITPASLAKLFVAEYAL-----AVADPNDEVSVSREALTKAKPGSSLAGI 119
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESL-----------CKTEKKFVQHMNNTSKNLG 146
T L + L ++V S ND A A+AE + F+ + K G
Sbjct: 120 VPGTYRLQDLLAAMLVPSGNDAAYAVAEFCGGKTHPGTAGTDQRIDLFMTDLAEYLKKQG 179
Query: 147 LSATHFMNAHGVVQHGHYTT----ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
S T + G T A +LS + D + + I L + N
Sbjct: 180 WSHTRINDPSGYDPRAVSTPSEIAAVSEKLLSRQWIRDIVKS-QRYAIAPLSGQHLMMVN 238
Query: 203 TNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
TN + G+KTG + A + + V LG+ +R
Sbjct: 239 TNQMLNPESIYYIPEVAGLKTGSLGKIHNLAILCA-KSGHDYLIVSLGSTSEASRYDDLN 297
Query: 258 SLLS 261
+L+S
Sbjct: 298 NLIS 301
>gi|257487909|ref|ZP_05641950.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|330883616|gb|EGH17765.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 118
Score = 63.5 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 7 IIAMAMLSNIFPFLSIAET---NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++ L+N L+ + ++D T V+ + PD AS+TKLMTA
Sbjct: 18 ALSTTTLANESAVLNRDPSNLHLASGSAMVIDLQTDKVLYSSNPDVIVPIASVTKLMTAM 77
Query: 64 VVFSFLK 70
VV +
Sbjct: 78 VVLDAKQ 84
>gi|153811401|ref|ZP_01964069.1| hypothetical protein RUMOBE_01793 [Ruminococcus obeum ATCC 29174]
gi|149832528|gb|EDM87612.1| hypothetical protein RUMOBE_01793 [Ruminococcus obeum ATCC 29174]
Length = 319
Score = 63.5 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 43/253 (16%), Positives = 80/253 (31%), Gaps = 23/253 (9%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
L+D + ++ + PASL KL + + I
Sbjct: 60 NAKSLILVDLSNDNIFISKRENEQQLPASLAKLFVIEYAATLADLDSIVPANYEAI---Q 116
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-----------CKTEKKFV 135
P S+ L N ++V S ND A +A+ + F+
Sbjct: 117 LTKPGSSVANIDAKKYFLHNLFAAMLVPSGNDAAYVVADYCGSILSPQAKNSQERINVFM 176
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR---DMAILSWRIKTDFPQYMHYFQIKG 192
+H+NN +N G T + G + T + L + +
Sbjct: 177 EHLNNYLQNQGYENTILYDPSGYDVNALTTVSDLKSVSTHLLEKQWFRDIVSKSNYTATL 236
Query: 193 LEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ + + NTN G+KTG + ++ +N+V Q + + LG+
Sbjct: 237 PDGSTQTWRNTNTFLDQTSEYYNENVKGIKTG-SLSNDYNLVVLYQQHGKEFLICSLGSQ 295
Query: 248 DRNTRNKVSASLL 260
++R +L
Sbjct: 296 SDSSRYDDVNYIL 308
>gi|307699728|ref|ZP_07636784.1| serine-type D-Ala-D-Ala carboxypeptidase [Mobiluncus mulieris
FB024-16]
gi|307615090|gb|EFN94303.1| serine-type D-Ala-D-Ala carboxypeptidase [Mobiluncus mulieris
FB024-16]
Length = 305
Score = 63.1 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 54/303 (17%), Positives = 94/303 (31%), Gaps = 50/303 (16%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE---------------------TNKLPYYTLLDTNTGH 40
++ + A+ +++ ++ Y ++D +
Sbjct: 6 KKMTAVFAVVVIAFFAWVVATPAGRGVIRVWIYPKPTTVGIDGTPYTGKGYVVIDEASQQ 65
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPSNSTFKK 98
IA + PASL KL A A +++S+ P S+
Sbjct: 66 RIAAAGENTEITPASLAKLFVAEYAL-----AVADPNDEVSVSREALTKAKPGSSLAGIV 120
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESL-----------CKTEKKFVQHMNNTSKNLGL 147
T L + L ++V S ND A A+AE + F+ + K G
Sbjct: 121 PGTYRLQDLLAAMLVPSGNDAAYAVAEFCGGKTHPGTAGTDQRIDLFMTDLAEYLKKQGW 180
Query: 148 SATHFMNAHGVVQHGHYTT----ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
S T + G T A +LS + D + + I L + NT
Sbjct: 181 SHTRINDPSGYDPRAVSTPSEIAAVSEKLLSRQWIRDIVKS-QRYAIAPLSGQHLMMVNT 239
Query: 204 NWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
N + G+KTG + A + + V LG+ +R +
Sbjct: 240 NQMLNPESIYYIPEVAGLKTGSLGKIHNLAILCA-KSGHDYLIVSLGSTSEASRYDDLNN 298
Query: 259 LLS 261
L+S
Sbjct: 299 LIS 301
>gi|227872356|ref|ZP_03990707.1| conserved hypothetical protein [Oribacterium sinus F0268]
gi|227841785|gb|EEJ52064.1| conserved hypothetical protein [Oribacterium sinus F0268]
Length = 222
Score = 63.1 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 48/223 (21%), Positives = 88/223 (39%), Gaps = 22/223 (9%)
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS--TFKKGSTMTLDNALKLLIVK 114
TKLMTA V S ++ L +S ++ +S + G ++++ N L +++
Sbjct: 1 TKLMTALVCVSSVE----NLDQEFVVSGSSVIKEAGSSTAFLQVGESLSIRNLLYGMLLP 56
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA--- 171
S ND AVA+AE+ + FV MN + LG ++HF N HG+ HYT+ D+
Sbjct: 57 SGNDAAVAVAEATAGSVSAFVDRMNEKALELGCLSSHFTNPHGLPDDNHYTSPYDIYLIL 116
Query: 172 --ILSWRIKTDFPQYMHYFQIKGLEIKGKK---------YPNTNWAVGTFLGADGMKTGF 220
+ + + + K Y + L KTG
Sbjct: 117 KECMKYDSLREILATKEIQVQYKDKNGIPKSQVWKATNLYSTGEKELPDGLEILAAKTGT 176
Query: 221 TCASGFNIVASAIQGDQ--SLIAVILGALDRNTRNKVSASLLS 261
T +G+ + + + +V++ ++ + +LL
Sbjct: 177 TKKAGYCLALTVDKASTAIPYYSVVMKGTNKENLYENMTNLLD 219
>gi|306818126|ref|ZP_07451857.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
gi|304649090|gb|EFM46384.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239]
Length = 305
Score = 62.7 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 54/303 (17%), Positives = 94/303 (31%), Gaps = 50/303 (16%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAE---------------------TNKLPYYTLLDTNTGH 40
++ + A+ +++ ++ Y ++D +
Sbjct: 6 KKMTAVFAVVVIAIFAWVVATPAGRGVIRVWIYPKPTTVGIDGTPYTGKGYVVIDEASQQ 65
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN--ASEYPPSNSTFKK 98
IA + PASL KL A A +++S+ P S+
Sbjct: 66 RIAAAGENTEITPASLAKLFVAEYAL-----TVADPNDEVSVSREALTKAKPGSSLAGIV 120
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESL-----------CKTEKKFVQHMNNTSKNLGL 147
T L + L ++V S ND A A+AE + F+ + K G
Sbjct: 121 PGTYRLQDLLAAMLVPSGNDAAYAVAEFCGGKTHPGTAGTDQRIDLFMTDLAEYLKKQGW 180
Query: 148 SATHFMNAHGVVQHGHYTT----ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
S T + G T A +LS + D + + I L + NT
Sbjct: 181 SHTRINDPSGYDPRAVSTPSEIAAVSEKLLSRQWIRDIVKS-QRYAIAPLSGQHLMMVNT 239
Query: 204 NWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
N + G+KTG + A + + V LG+ +R +
Sbjct: 240 NQMLNPESIYYIPEVAGLKTGSLGKIHNLAILCA-KSGHDYLIVSLGSTSAASRYDDLNN 298
Query: 259 LLS 261
L+S
Sbjct: 299 LIS 301
>gi|268607998|ref|ZP_06141729.1| Serine-type D-Ala-D-Ala carboxypeptidase [Ruminococcus flavefaciens
FD-1]
Length = 172
Score = 62.7 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 70/161 (43%), Gaps = 2/161 (1%)
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+ V +AND +AE ++ ++FV+ MN+ + +LGL T F + G YTTA D
Sbjct: 1 MSFVGNANDALTVLAEKSERSAEEFVKRMNSEAFDLGLRDTAFYSPDGYHDDREYTTAHD 60
Query: 170 MAILSWRIK-TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+A++ ++ DF + + N N T+ G K + +G+ I
Sbjct: 61 IAVICAKLAKYDFLAPFFSTWRDFVGEGRTELVNENKLSRTYDQHIGFKAVHSDHTGYCI 120
Query: 229 VASAIQG-DQSLIAVILGALDRNTRNKVSASLLSMGFYNKT 268
G +AV+LGA D +T + LL G+
Sbjct: 121 AEGGDNGKGMRCVAVVLGAEDADTMYDTAKLLLKKGYTEYK 161
>gi|227541842|ref|ZP_03971891.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227182285|gb|EEI63257.1| conserved hypothetical protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length = 222
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 6/139 (4%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
++ S+ + + + D +TG + A P + PAS+ K++ A V +
Sbjct: 6 VSVPEGFSLPDGLLAHSFLVFDLDTGDIYAAKDPHGRYRPASIIKVLLASVAID-----R 60
Query: 74 AMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK 133
LT + ++ +S+ S++ G T+D+ L L++ S ND A AIA+ L E+
Sbjct: 61 LSLTDSMEVTAESSDQEGSSAGIGPGGRYTVDDLLHGLLMASGNDTAHAIAQLLGGDEEA 120
Query: 134 FVQHMNNTSKNLGLSATHF 152
+ +N + +LG +
Sbjct: 121 L-RMVNARALDLGPLTPVW 138
>gi|118354439|ref|XP_001010482.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila]
gi|89292249|gb|EAR90237.1| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila SB210]
Length = 869
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 1/106 (0%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+++ D +G +I ASLTK+MT YV + I
Sbjct: 92 PISALCWSVTDAVSGQLIYSKMSSEVREMASLTKMMTLYVCHQLSTTYNLNAESEEIIVP 151
Query: 85 NA-SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ +++ ++ + L + L++ S ND AV +A +
Sbjct: 152 RIAAYTCGTSAFLRENEKLCLQDLYYALMLPSGNDAAVTLAHHFGQ 197
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 56/149 (37%), Gaps = 13/149 (8%)
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY 187
+ +FV+ MN ++ LG+ + F N HG+ + +T D++ ++ I
Sbjct: 278 QQYISRFVKEMNKYAQKLGMRDSQFSNCHGLASKSNRSTCEDLSKVALNIIQTPYLQQIC 337
Query: 188 ---------FQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCASGFNIVASAIQG-- 235
+ +I+ ++ NTN G+KTG T +G +
Sbjct: 338 STKNYQCIIYHTIKKDIRKAEWVNTNKLLWDETNSFKGVKTGCTDNAGPCLCVYYKDPIN 397
Query: 236 -DQSLIAVILGALDRNTRNKVSASLLSMG 263
+ LI +L + R S++L
Sbjct: 398 VNIELIVTVLCCRNPERRFDDSSNLARWA 426
>gi|113477326|ref|YP_723387.1| beta-lactamase [Trichodesmium erythraeum IMS101]
gi|110168374|gb|ABG52914.1| beta-lactamase [Trichodesmium erythraeum IMS101]
Length = 468
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 9/218 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
P L+DT+TG + D AS KL F + + + L +T+ ++
Sbjct: 229 PGVFLIDTDTGA-YVDINGDATMAAASTIKLPILVAFFQAVDQGRIKLNDLLTMKESHVA 287
Query: 89 Y-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ GS T ++ +I+ S N + E L + +N + ++ GL
Sbjct: 288 EGSGNMQFRNPGSKYTALQTVRKMIIISDNTATNMLIEEL-----GGAEILNQSFQSWGL 342
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
T N+ + + TT++D+ L + + I + N+
Sbjct: 343 KNTVINNSLPDLSGTNTTTSKDLINLIS-QINQGGLVSLKSRDRLFRIMERTQNNSLLPR 401
Query: 208 GTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
G G KTG + ++ + + + +L
Sbjct: 402 GVGRGSVVAHKTGNLKSMLADVGMIDLVNGRRYLLAVL 439
>gi|253578339|ref|ZP_04855611.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 5_1_39B_FAA]
gi|251850657|gb|EES78615.1| D-alanyl-D-alanine carboxypeptidase [Ruminococcus sp. 5_1_39BFAA]
Length = 320
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/240 (17%), Positives = 74/240 (30%), Gaps = 24/240 (10%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
++ L+D + + + P PASL KL + ++ I
Sbjct: 29 PDSYNAKSLILVDCSDDEIFVSKNENEPQIPASLAKLFVIEYASTLADLDSIVVADYGAI 88
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-----------LCKTE 131
S P S+ K L N ++V S ND A +A+ +
Sbjct: 89 S---LTKPGSSVAQIKEKEYFLHNLFAAMLVPSGNDAAYVVADYCGGLLSPQAESCQERV 145
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW---RIKTDFPQYMHYF 188
+ F++++N + G T + G TT ++ + +
Sbjct: 146 RIFMENLNLHLQQQGYLDTVLYDPSGFDMEALTTTLDLKEVVYRLLEYSWFREIVSQNTY 205
Query: 189 QIKGLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ + + NTN G+KTG IV Q + L+ V+
Sbjct: 206 TATLPDGSTQIWQNTNAFLDPTSEYYNENVCGIKTGSLSDDYNLIVL--YQQHRRLLLVM 263
>gi|322374183|ref|ZP_08048716.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
gi|321276888|gb|EFX53960.1| serine-type D-Ala-D-Ala carboxypeptidase [Streptococcus sp. C150]
Length = 272
Score = 62.3 bits (149), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/223 (17%), Positives = 77/223 (34%), Gaps = 31/223 (13%)
Query: 138 MNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFPQ 183
M K G++ +NA G+ + + +D+AI++ + ++P+
Sbjct: 1 MKAQLKKWGITDAKIVNASGLNNSYLGDNIYPGSKSDEENTMSTKDVAIIAQHVIKEYPE 60
Query: 184 YMHYFQIKGLEI-KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQS 238
+ + + K N+ G DG+KTG T +G VA + + S
Sbjct: 61 ILDITKKTEAKFDGVNKLKTFNYMLKGQPSYRKGVDGLKTGTTDLAGAAFVAHSNESGMS 120
Query: 239 LIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISE 294
+I VI+ A D R + LL+ Y+ + ++ +N + S+
Sbjct: 121 IITVIINAEHTDTDDYARFTATNDLLNYVVYHWESKTVAKKGQD--IDKSQANVLDGKSK 178
Query: 295 EVCTTQKEIINYNTQMKEAKDK------ESHFIDFEKITLLKN 331
+V K N ++ + K + +
Sbjct: 179 QVSAVAKSDFNIIQKIDDDNTKHIKVSTNQIQAPVKSGDKVGT 221
>gi|55823010|ref|YP_141451.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
truncated [Streptococcus thermophilus CNRZ1066]
gi|55738995|gb|AAV62636.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
truncated [Streptococcus thermophilus CNRZ1066]
Length = 313
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/253 (18%), Positives = 90/253 (35%), Gaps = 31/253 (12%)
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG----------- 157
++ S + K++ MN SK L ++ T + NA G
Sbjct: 1 MTSVLSSNVTTVMLANYLTNNDPDKWLDMMNEKSKELSMTNTKWFNASGAAAVAFKGYYS 60
Query: 158 ----VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--- 210
+ TTARD+ I+++ +P + Y + +K + +
Sbjct: 61 PQRYDNNQSNQTTARDLVIMTYNFIKKYPDILKYTSKPVVAVKEGTPYEETFETYNYSIP 120
Query: 211 ------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LDRNTRNKVSAS 258
G DG KTGF+ FN + + G+Q +IA+I+G+ R+ +
Sbjct: 121 GANYGLKGVDGSKTGFSPEVAFNYIDTIKHGNQRMIAIIMGSGDWSDQTGEEIRHTFGNA 180
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
L+ + + + +K ++ ++ N +I V Q+ I+ +
Sbjct: 181 LVEKMYKDFSYKKVLSKGEQEIA-GKKYNVENDIYATVKKGQEPKISVKDDQIVIDNGLK 239
Query: 319 HFIDFEKITLLKN 331
K T +K+
Sbjct: 240 TVSPNIKPTSVKD 252
>gi|55821084|ref|YP_139526.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
truncated [Streptococcus thermophilus LMG 18311]
gi|55737069|gb|AAV60711.1| D-alanyl-D-alanine-carboxypeptidase, penicillin-binding protein,
truncated [Streptococcus thermophilus LMG 18311]
Length = 313
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 45/253 (17%), Positives = 89/253 (35%), Gaps = 31/253 (12%)
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG----------- 157
++ S + K++ MN SK L ++ T + NA G
Sbjct: 1 MTSVLSSNVTTVMLANYLTNNDPDKWLDMMNEKSKELSMTNTKWFNASGAAAVAFKGYYS 60
Query: 158 ----VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--- 210
+ TTARD+ I+++ +P + Y + +K + +
Sbjct: 61 PQRYDNNQSNQTTARDLVIMTYNFIKKYPDILKYTSKPVVAVKEGTPYEETFETYNYSIP 120
Query: 211 ------LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA------LDRNTRNKVSAS 258
G DG KTG + FN + + G+Q +IA+I+G+ R+ +
Sbjct: 121 GANYGLKGVDGSKTGSSPEVAFNYIDTIKHGNQRMIAIIMGSGDWSDQTGEEIRHTFGNA 180
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
L+ + + + +K ++ ++ N +I V Q+ I+ +
Sbjct: 181 LVEKMYKDFSYKKVLSKGEQEIA-GKKYNVENDIYATVKKGQEPKISVKDDQIVIDNGLK 239
Query: 319 HFIDFEKITLLKN 331
K T +K+
Sbjct: 240 TVSPNIKPTSVKD 252
>gi|196232518|ref|ZP_03131370.1| hypothetical protein CfE428DRAFT_4537 [Chthoniobacter flavus
Ellin428]
gi|196223280|gb|EDY17798.1| hypothetical protein CfE428DRAFT_4537 [Chthoniobacter flavus
Ellin428]
Length = 99
Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+A+L + + Y + D+ TG V+ + D SLTK+ TA VV
Sbjct: 6 FALVALLFTLLAVAVPGRAEEAAAYAVTDSTTGFVLDQYRGDKKLPIGSLTKVATAMVVL 65
Query: 67 SFLKEKKAMLTTPITI 82
+ + L T+
Sbjct: 66 DWSAASNSNLDQVATV 81
>gi|213025038|ref|ZP_03339485.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 160
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 57/146 (39%), Gaps = 7/146 (4%)
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL-----SWRI 177
+A F++ MN +K LG++ T F+ G+ + +TARD+ L + +
Sbjct: 3 LAHYYPGGYNAFIKAMNAKAKALGMTHTRFVEPTGL-SIHNVSTARDLTKLLIATKQYPL 61
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGD 236
+ NTN V KTGFT A+G +V + +
Sbjct: 62 IGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINN 121
Query: 237 QSLIAVILGALDRNTRNKVSASLLSM 262
+ + V++ A + T ++ L +
Sbjct: 122 KPVALVVMDAFGKYTHFADASRLRTW 147
>gi|294616051|ref|ZP_06695871.1| D, D-carboxypeptidase, putative [Enterococcus faecium E1636]
gi|291591087|gb|EFF22776.1| D, D-carboxypeptidase, putative [Enterococcus faecium E1636]
Length = 309
Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 52/311 (16%), Positives = 105/311 (33%), Gaps = 57/311 (18%)
Query: 1 MRQFL---VIIAMAMLSNIFPFLSIAETNKLPYY---------TL--------------- 33
M++FL +++ +++ + + PY L
Sbjct: 1 MKRFLKWGLVLLASLIVILMCTAVVISYVNRPYARAVYDRIKRILDKDFYDHLYLGSSFE 60
Query: 34 -LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK---NASEY 89
++ +T + + D PASL+KL T L ITIS + +
Sbjct: 61 IINLDTMDIHSYMKKDQEELPASLSKLFTIDYAL-----SVLSLDEQITISPTALDMQKA 115
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-----------LCKTEKKFVQHM 138
S + ++G +++ + + +++ S ND A ++A + + F++++
Sbjct: 116 DSSTAHLQEGDILSVYDIICAMVLPSGNDAAYSLAIYTGGKLDPDAKNDEERYQSFMKNL 175
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF-------PQYMHYFQIK 191
+ G THF +A G T+A D+ ++ ++ + + IK
Sbjct: 176 DRYLSEQGYKHTHFTDAAGYDS-NATTSAEDLTKVAAKLLKNDKFAEIVAKETYRAKSIK 234
Query: 192 GLEIKGKKYPNTNWAVGTF--LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
G + G G+KTG V D + V G+
Sbjct: 235 GNVYNWNTTNQFMQQDNRYFTEGVKGVKTGSFDGRYNLCVYYTSSSDNHYLLVSFGSESD 294
Query: 250 NTRNKVSASLL 260
+ R +LL
Sbjct: 295 SRRYVDVQNLL 305
>gi|213024068|ref|ZP_03338515.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 72
Score = 61.1 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
++D NT VI N+PD AS+TKLMTA VV
Sbjct: 5 SAMIVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDAR 44
>gi|325473430|gb|EGC76625.1| hypothetical protein HMPREF9353_02420 [Treponema denticola F0402]
Length = 188
Score = 60.8 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 9/136 (6%)
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN------TRNKVSA 257
N + G DG+KTGF SGFNI +A + + IAVILG +N R + S
Sbjct: 6 NTLLKKIEGCDGLKTGFIYESGFNISLTAQKNGERFIAVILGGHGKNFTEGIFKREQNSI 65
Query: 258 SLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
L++ F N + L + + + + + K+ E
Sbjct: 66 KLMNFAFDNFKSFDIREHNKIKKSVSVLGSNLNVKTSAFIPLLADEDFSQDYLTVFKNDE 125
Query: 318 SHFIDFEKITLLKNKI 333
H E++ +L + I
Sbjct: 126 RH---IEQVIILPDVI 138
>gi|307151215|ref|YP_003886599.1| beta-lactamase [Cyanothece sp. PCC 7822]
gi|306981443|gb|ADN13324.1| beta-lactamase [Cyanothece sp. PCC 7822]
Length = 472
Score = 60.4 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/226 (11%), Positives = 68/226 (30%), Gaps = 6/226 (2%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + + + D + G+ + P AS K+ + + K L
Sbjct: 160 LVPKYPKLEARAFFV-DMDNGN-YVDINAQAPIPAASTIKIFVLVALLEQIDAGKVRLDE 217
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T++K+ + ++ ++ +++ A + Q +
Sbjct: 218 QLTMTKDIVTSGSGDMQYQPVGKKFTVLETATKMIIISDNTATDML----VKRLGGKQVL 273
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N + GL+ T N ++ + T+ RD+A + R+ + ++
Sbjct: 274 NQRFREWGLTNTIINNILPDLEGTNTTSPRDLAYILMRVNQGELLSLKSRDRMLNIMQQT 333
Query: 199 KYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
K KTG + + + I ++
Sbjct: 334 KTRTLLPQGLDSDAIIAHKTGDIGTVLGDAGIIDMPNGKRYIGAVM 379
>gi|153853149|ref|ZP_01994558.1| hypothetical protein DORLON_00543 [Dorea longicatena DSM 13814]
gi|149753935|gb|EDM63866.1| hypothetical protein DORLON_00543 [Dorea longicatena DSM 13814]
Length = 189
Score = 60.4 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 9/157 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ F + +A +S ETN L L D + V PAS TK+MT
Sbjct: 33 KLFASDLCVASGDISLSGISSDETNTLHSAALFDVDRKKVDFSYQMFDKIYPASTTKIMT 92
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEY----PPSNSTFKKGSTMTLDNALKLLIVKSAN 117
A V L+ +T+S+NA + K G +TL + L L++ S N
Sbjct: 93 ALVALENAD-----LSDVVTVSQNADMNSFAADEATCGIKAGDKITLSDLLYGLLLHSGN 147
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
D A AIAE + + F + MN + L + T +
Sbjct: 148 DNATAIAEYVGGSMDGFAEMMNKEAAKLMATGTQYAR 184
>gi|290958430|ref|YP_003489612.1| peptidoglycan carboxypeptidase [Streptomyces scabiei 87.22]
gi|260647956|emb|CBG71061.1| putative peptidoglycan carboxypeptidase [Streptomyces scabiei
87.22]
Length = 549
Score = 60.4 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+ + + PFL ++D TG + D PAS TK+ TA S
Sbjct: 162 ALAAALDPFLKAPVLGPRRAAAVVDVKTGERLYAQNADDALTPASTTKIATAVAALSA 219
>gi|2765071|emb|CAA71324.1| ES-beta-lactamase [Escherichia coli]
Length = 286
Score = 60.4 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 42/273 (15%), Positives = 82/273 (30%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASKRGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL--GALDRNTRNKVSASL 259
+ + ++ + + G + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYMTGGQATMDERNRQIAEI 278
>gi|163838956|ref|YP_001623361.1| D-alanyl-D-alanine carboxypeptidase [Renibacterium salmoninarum
ATCC 33209]
gi|162952432|gb|ABY21947.1| D-alanyl-D-alanine carboxypeptidase [Renibacterium salmoninarum
ATCC 33209]
Length = 324
Score = 60.4 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 53/264 (20%), Positives = 90/264 (34%), Gaps = 26/264 (9%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLDTNTGHVIAENYP 47
+ L ++ +L +I T L+D T +
Sbjct: 7 KLLLAATSIILLVTACATATIGPTVTSDPVAGYSVNWPQSPASIMLVDGKT--PLTNQPA 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEK------KAMLTTPITISKNASEY-PPSNSTFKKGS 100
P AS K++TA V K L S A + +G
Sbjct: 65 QQPAPTASTAKIITALTVLKENPLKIGDDGPTIKLGRIDVKSYEAYREANGTVVPVYEGM 124
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
++ L+ +++ SAN++A ++A + + + Q + + LGL+ T
Sbjct: 125 EISQHQILEAMLLPSANNLADSLARWSFGSLEDYRQSAQDFIRELGLTKTTIGIDASGYD 184
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+TA D+A+L+ + K NTN +G G G+KTG
Sbjct: 185 PSTQSTATDLAVLAAAAMRNPVIADILGLAAVDGGTMGKLVNTNNLLGQH-GLIGLKTGT 243
Query: 221 TCASG--FNIVASAIQGDQSLIAV 242
T +G F VA A+ +I V
Sbjct: 244 TPQAGGVFLFVARAVVEGLDVIFV 267
>gi|302532678|ref|ZP_07285020.1| LOW QUALITY PROTEIN: penicillin binding protein PbpA [Streptomyces
sp. C]
gi|302441573|gb|EFL13389.1| LOW QUALITY PROTEIN: penicillin binding protein PbpA [Streptomyces
sp. C]
Length = 422
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 49/237 (20%), Positives = 92/237 (38%), Gaps = 12/237 (5%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
SI K + +G + P AS+ K+MTAYV+ +K
Sbjct: 57 ALFSIPWPAKGQAAVRV-VGSGTI-GTVGEQKPMPTASVAKIMTAYVILKGHPLRKNEPG 114
Query: 78 -----TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+++ + G + + +K+L++ SAN+IA +A ++
Sbjct: 115 PKIEADAKAVAEGNASSESRIEGLTAGQKFSQLDMIKMLMIPSANNIARLLARWDTGGDE 174
Query: 133 -KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
FV MN +K LG++ T + + G+ T + + +K D + +
Sbjct: 175 AAFVAKMNAAAKELGMTNTTYTDPSGLDAGTVSTAVDQLKLAEAVMKDDAFRTVVAMPSA 234
Query: 192 GLEIKGKKYPNTN-WAVGTFLGADGMKTGFTCASGFNIVASAIQ---GDQSLIAVIL 244
+E K N N + L +G+KTG + +G + +A + G+ LI +
Sbjct: 235 PIEGLSKPLINNNGSLLLAGLNINGIKTGSSTPAGGTLSWAAYKTVGGETPLILGTM 291
>gi|145478575|ref|XP_001425310.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392379|emb|CAK57912.1| unnamed protein product [Paramecium tetraurelia]
Length = 262
Score = 60.0 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 10/138 (7%)
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT---------DFP 182
F+ MN + ++ + T++ + HG+ + + D++ L +
Sbjct: 121 HTFLDQMNKHASSIKMENTNYSSVHGLNDEKNVSCPHDISKLIEKCIQLDVFLEIITTKI 180
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
H KG + K+ NTN + G G+KTG T +G + I V
Sbjct: 181 FKTHALTDKGGKSTLYKWKNTNKLLKK-SGWMGVKTGVTPNAGPCFTGYYKNDNLEAIIV 239
Query: 243 ILGALDRNTRNKVSASLL 260
+L N R + + LL
Sbjct: 240 VLNCSSMNQRFRDAEVLL 257
>gi|55820180|ref|YP_138622.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
thermophilus LMG 18311]
gi|55736165|gb|AAV59807.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
thermophilus LMG 18311]
Length = 273
Score = 59.6 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 34/224 (15%), Positives = 76/224 (33%), Gaps = 31/224 (13%)
Query: 137 HMNNTSKNLGLSATHFMNAHGVV--------------QHGHYTTARDMAILSWRIKTDFP 182
M K+ G++ +NA G+ + +A+ +A+++ + ++P
Sbjct: 1 MMKAQLKDWGITDAKIVNASGLNNSYLGNNIYPGSKSDEENTMSAKGVAVIAQHVIKEYP 60
Query: 183 QYMHYFQIKGLEI-KGKKYPNTNWA----VGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + + K N+ G DG++TG T +G + VA + +
Sbjct: 61 EILDITKKTEANFDGVNKLKTFNYMLKGQPSYRKGVDGLQTGTTDLAGASFVAHSNESGM 120
Query: 238 SLIAVILGAL----DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNIS 293
S+I VI+ A D + LL+ Y+ + ++ + + S
Sbjct: 121 SIITVIINAEHTDTDDYAWFTATNELLNYVVYHWESKTIAKKGQA--ISKSQVDVLDGKS 178
Query: 294 EEVCTTQKEIINYNTQMKEAKDK------ESHFIDFEKITLLKN 331
++V K N ++ +K + +
Sbjct: 179 KQVSAVAKSDFNIIQKIDANNNKHIKVTTNQIQSPVKSGDKVGT 222
>gi|325675183|ref|ZP_08154868.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodococcus equi ATCC 33707]
gi|325553889|gb|EGD23566.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodococcus equi ATCC 33707]
Length = 469
Score = 59.6 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 20/56 (35%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
A L + L + D TG + PD P PAS K++TA
Sbjct: 82 AALGAVLAPLVSNPALGAFTGVVADARTGTTLWSRNPDTPMTPASTAKILTAAAAM 137
>gi|254384371|ref|ZP_04999713.1| penicillin binding protein PbpA [Streptomyces sp. Mg1]
gi|194343258|gb|EDX24224.1| penicillin binding protein PbpA [Streptomyces sp. Mg1]
Length = 428
Score = 59.6 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 8/196 (4%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLT-----TPITISKNASEYPPSNSTFKKGST 101
P AS+ K+MTAYV+ + ++ ASE+ G+
Sbjct: 89 EQKPVPTASVAKVMTAYVILKSHPLRGGDPGPQIEIDAKAVADGASEHESRVEGLVAGTK 148
Query: 102 MTLDNALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ + LK+L++ SAN++A +A +E FV+ MN ++ LG++ T + + G+
Sbjct: 149 FSQQDMLKMLMIPSANNVARLLARWDSGTDSEAAFVEKMNAAARELGMTNTTYTDPSGLD 208
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-LGADGMKT 218
T A + + +K + + + ++ N N + L G+KT
Sbjct: 209 AATVSTAADQLKLADAVMKEEAFRAVVALPSAEIKGLSTPLYNNNTLLTVNGLSIRGIKT 268
Query: 219 GFTCASGFNIVASAIQ 234
G + +G ++ +A +
Sbjct: 269 GSSTPAGGALMWAAYK 284
>gi|312138046|ref|YP_004005382.1| d-alanyl-d-alanine carboxypeptidase [Rhodococcus equi 103S]
gi|311887385|emb|CBH46697.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus equi
103S]
Length = 469
Score = 59.2 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 20/56 (35%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
A L + L + D TG + PD P PAS K++TA
Sbjct: 82 AALGAVLAPLVSNPALGAFTGVVADARTGTTLWSQNPDTPMTPASTAKILTAAAAM 137
>gi|265999457|ref|ZP_06111698.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
str. 63/9]
gi|263094079|gb|EEZ18001.1| D-alanyl-D-alanine carboxypeptidase 1 [Brucella melitensis bv. 2
str. 63/9]
gi|326409094|gb|ADZ66159.1| D-alanyl-D-alanine carboxypeptidase 1, S11 family [Brucella
melitensis M28]
gi|326538798|gb|ADZ87013.1| D-alanyl-D-alanine carboxypeptidase [Brucella melitensis M5-90]
Length = 188
Score = 59.2 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+ + G DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ F
Sbjct: 1 MYRYAGVDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTR-FGG 59
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVC 297
+ K + Q + P++ ++
Sbjct: 60 VDNGKAAPLVAMAKPQAVTAKLKPDVVADLI 90
>gi|254416694|ref|ZP_05030444.1| beta-lactamase, putative [Microcoleus chthonoplastes PCC 7420]
gi|196176434|gb|EDX71448.1| beta-lactamase, putative [Microcoleus chthonoplastes PCC 7420]
Length = 526
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 44/235 (18%), Positives = 82/235 (34%), Gaps = 10/235 (4%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ + + ++ + P ++D +TG + + + AS K+ F +
Sbjct: 242 LKAQVQTLVAKNPKLQ-PGVFVVDLDTGAYL-DWQSHSIFPAASTIKVAILVAFFQEVDA 299
Query: 72 KKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
K L P+T+ K G+ + +I S N I L
Sbjct: 300 GKIRLDEPLTMEPEMIAKGSGDMQYQKPGTQYSALEVATKMITISDNTATNMIIHRL--- 356
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
+Q +N + GL+AT N ++ + T ARDMA L + +
Sbjct: 357 --GGIQAVNQRFISWGLTATAINNPLPDLEGTNTTNARDMANLLY-KVNQGELLSLRSRD 413
Query: 191 KGLEIKGKKYPNTNWAVGTFLGAD-GMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ L+I + N+ G GA KTG + ++ + + + V L
Sbjct: 414 RLLDIMQRTVNNSLIPQGLDSGATVAHKTGDIGSVLGDVGIVDMPTGKRYLIVTL 468
>gi|20530259|gb|AAM22276.1| beta-lactamase TEM-96 [Escherichia coli]
Length = 286
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + LG A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLGRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|256371452|ref|YP_003109276.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008036|gb|ACU53603.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium
ferrooxidans DSM 10331]
Length = 416
Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/246 (20%), Positives = 89/246 (36%), Gaps = 15/246 (6%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A A + P + + + G + P P AS+ K+MTA +
Sbjct: 58 ATATIPGSAPNVPWPSGGEAAAEIV---GVGRI-GTYGPTTPQTIASVAKMMTALLTIRD 113
Query: 69 LKEKKAMLTTPITISKNASE-------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
ITI+ + S G ++ AL+ L++ SA+++A
Sbjct: 114 HPLSLGQQGPSITITPEDYQIYLTDKAQNDSVMAVAPGEQLSEYQALEALLIPSADNMAT 173
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+A +E FV MN+ +K LGL+ TH+ + G+ Y+ A ++ + +
Sbjct: 174 VLATWDAGSESAFVAQMNHEAKVLGLTDTHYGDPSGLSAAT-YSNASSQLRVARLVMANP 232
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL-- 239
+ + N N V G G+KTG F + + G +
Sbjct: 233 VLASIVSKPQATLPVAGVVYNVNGEVTHH-GIIGVKTGSILTGNFAMACAVHVGTSTYTG 291
Query: 240 IAVILG 245
+ V+L
Sbjct: 292 LGVVLD 297
>gi|2765069|emb|CAA71323.1| ES-beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/273 (15%), Positives = 83/273 (30%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASKRGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
+ + ++ + + G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYMTGSQATMDERNRQIAEI 278
>gi|294852416|ref|ZP_06793089.1| predicted protein [Brucella sp. NVSL 07-0026]
gi|294821005|gb|EFG38004.1| predicted protein [Brucella sp. NVSL 07-0026]
Length = 165
Score = 58.4 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 6/120 (5%)
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
M TGFT ASG+ +V SA Q + L + G R + + L+ G D +
Sbjct: 1 MGTGFTEASGYALVGSAEQNGRRLFLAMSGLASVKEREEEARKLIQWGMTGFDDMRIFAA 60
Query: 276 IIKDFYQQNLSNE------VPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLL 329
K Q + V E+ ++ ++ ++ ++ L
Sbjct: 61 NDKVGDAQVFGGQSSTLPLVVKKDVELLLPKEAREKLKARIIYEGPLQAPIAAGTEVGRL 120
>gi|289549536|ref|YP_003470440.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
[Staphylococcus lugdunensis HKU09-01]
gi|289179068|gb|ADC86313.1| D-alanyl-D-alanine carboxypeptidase/Penicillin binding protein PBP4
[Staphylococcus lugdunensis HKU09-01]
Length = 125
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 15/103 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI--------------AETNKLPYYTLLDTNTGHVIAENY 46
++ F++++ + M+ + + A+ + T G ++ + +
Sbjct: 4 IKGFVLLLCLCMMFSPLTTYAAKTPTQIAEAEKQHIAQHYNPKSMIVT-TQQGQILYDYH 62
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+PAS+TKLMT Y+V + + K LT + +S ++
Sbjct: 63 QHDNVDPASITKLMTIYLVLDDIDKGKIKLTDEVKVSGRYAKM 105
>gi|209527557|ref|ZP_03276058.1| beta-lactamase [Arthrospira maxima CS-328]
gi|209491980|gb|EDZ92334.1| beta-lactamase [Arthrospira maxima CS-328]
Length = 493
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/247 (18%), Positives = 74/247 (29%), Gaps = 9/247 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L ++ A + P LD NTG AS K+ F +
Sbjct: 232 LKTQLELVAAASPDITPALMFLDLNTGG-YVGLREQSKVPAASTIKVPILVAFFQAVDAG 290
Query: 73 KAMLTTPITISKNASE-YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ L + +++N G+ T ++ S N I E L
Sbjct: 291 EIRLDEMLVMTENHQVGEAGIMQYQPPGTEYTALATATKMMTISDNTATNMIIERLGGF- 349
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q +N ++ GL+ T N ++ + TT RDM L + +
Sbjct: 350 ----QVLNQKFRSWGLTDTLVRNPLPDIEGTNQTTPRDMVSLLS-QIHQGGLLSMTSRDR 404
Query: 192 GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
L I + N G G KTG ++ + + I IL +
Sbjct: 405 LLRIMTETENNHLLPSGVSNGAVVAHKTGTLNIMLADVGIVDMPNGKRYILAILAQRNNG 464
Query: 251 TRNKVSA 257
+ S
Sbjct: 465 DQAAESM 471
>gi|37575115|gb|AAQ93490.1| class A beta-lactamase TEM-123 [Proteus mirabilis]
Length = 285
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/276 (15%), Positives = 83/276 (30%), Gaps = 13/276 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDH 49
++ F V + + P + ET Y LD N+G ++ P+
Sbjct: 3 IKHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEE 62
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V S + + L I S+N + MT+
Sbjct: 63 RFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCS 122
Query: 110 LLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + ++ ++ F+ +M + L A + A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPA 182
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
L + + Q+ K + K+G +
Sbjct: 183 AMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRG 242
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMG 263
I+A G S I VI + T ++ + + +G
Sbjct: 243 IIALGPDGKPSRIVVIYTTGSQATMDEANRQIAEIG 278
>gi|332708822|ref|ZP_08428793.1| beta-lactamase class A [Lyngbya majuscula 3L]
gi|332352364|gb|EGJ31933.1| beta-lactamase class A [Lyngbya majuscula 3L]
Length = 490
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/240 (17%), Positives = 75/240 (31%), Gaps = 16/240 (6%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-EYPPSN 93
D +TG + E+ + AS KL F + K +L IT+ +
Sbjct: 259 DLDTGAFL-ESNSRLIFPAASTIKLPILIAFFQDVDAGKVLLDEYITMKPEMIAGGSGNM 317
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
K G +I S N + E L ++ +N ++ GL T
Sbjct: 318 QYQKPGKQYKALEVATKMITISDNTATNMLIERL-----GGIEVLNQRFRSWGLKKTVLR 372
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
N + + T+ R++A L + ++I + NT G GA
Sbjct: 373 NPLPDLPGTNTTSPRELASLI-FNLEQGKWISPQSRTDLIDIMIQTKTNTLLPQGLGNGA 431
Query: 214 DGM-KTGFTCASGFNIVASAIQGDQSLIAVIL------GALDRNTRNKVSASLLSMGFYN 266
KTG ++ + + I ++ A +S + F N
Sbjct: 432 TIAHKTGTLGRLLADVGLVKMPNGKRYIISVMVKRPFNDASAEKLIRTISRQVYDY-FNN 490
>gi|71082599|gb|AAZ23494.1| bla-TEM-139 extended spectrum beta-lactamase [Klebsiella
pneumoniae]
Length = 286
Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y +D N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIEMDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|81365635|gb|AAZ14083.2| TEM-145 [Escherichia coli]
Length = 286
Score = 58.1 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLMRSALPAGWFIADKSGAGERGSHGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|209974342|gb|ACJ04051.1| extended-spectrum beta-lactamase TEM-167 [Escherichia coli]
Length = 286
Score = 58.1 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 84/273 (30%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K +V K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSVLPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
+ + ++ + + G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYMTGSQATMDERNRQIAEI 278
>gi|27817549|emb|CAA66659.1| beta-lactamase [Pseudomonas aeruginosa]
Length = 281
Score = 58.1 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/273 (15%), Positives = 82/273 (30%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 3 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGVRVGYIELDLNSGKILESFRPEERFP 62
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 63 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 122
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 123 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 182
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 183 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASKRGSRGIIA 242
Query: 231 SAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
+ + ++ + + G+ + RN+ A +
Sbjct: 243 ALGPDGKPSRIVVIYMTGSQATMDERNRQIAEI 275
>gi|2765067|emb|CAA71322.1| ES-beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 58.1 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/273 (15%), Positives = 82/273 (30%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASKRGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
+ + ++ + + G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYMTGSQATMDERNRQIAEI 278
>gi|14588993|emb|CAC43230.1| TEM-86 ES-beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 58.1 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/273 (15%), Positives = 82/273 (30%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGTGKRGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
+ + ++ + + G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYMTGSQATMDERNRQIAEI 278
>gi|18482488|gb|AAL68923.1| TEM-type beta-lactamase [Klebsiella pneumoniae]
gi|283855865|gb|ADB45252.1| BlaTEM-1 [Serratia marcescens]
Length = 286
Score = 58.1 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/273 (15%), Positives = 82/273 (30%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
+ + ++ + + G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYMTGSQATMDERNRQIAEI 278
>gi|213133710|gb|ACJ43254.1| TEM-57 beta-lactamase [Escherichia coli]
Length = 286
Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLDRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|291566346|dbj|BAI88618.1| probable beta-lactamase [Arthrospira platensis NIES-39]
Length = 498
Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/247 (17%), Positives = 73/247 (29%), Gaps = 9/247 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L N ++ + P LD NTG AS K+ F +
Sbjct: 232 LKNQLESVAATSPDVSPALMFLDLNTGG-YVGLREQSIVPAASTIKVPILVAFFQAVDAG 290
Query: 73 KAMLTTPITISKNASE-YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ L + +++N G+ T ++ S N I + L
Sbjct: 291 EIRLDEMLVMTENHQVGEAGIMQYQPPGTEYTALETATKMMTISDNTATNMIIDRLGGF- 349
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q +N ++ GL+ T N ++ + TT RDM L + +
Sbjct: 350 ----QVLNQRFRSWGLTDTMARNPLPDIEGTNKTTPRDMVNLFS-QIHQGGLLSMTSRDR 404
Query: 192 GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
L I + N G G KTG ++ + + I IL
Sbjct: 405 LLRIMTETENNHLLPSGVGNGAVVAHKTGTLNIMLADVGIVDMPNGKRYILAILAERTNG 464
Query: 251 TRNKVSA 257
+ S
Sbjct: 465 NQAAESM 471
>gi|284054899|ref|ZP_06385109.1| beta-lactamase [Arthrospira platensis str. Paraca]
Length = 501
Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/247 (17%), Positives = 73/247 (29%), Gaps = 9/247 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L N ++ + P LD NTG AS K+ F +
Sbjct: 235 LKNQLESVAATSPDVSPALMFLDLNTGG-YVGLREQSIVPAASTIKVPILVAFFQAVDAG 293
Query: 73 KAMLTTPITISKNASE-YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
+ L + +++N G+ T ++ S N I + L
Sbjct: 294 EIRLDEMLVMTENHQVGEAGIMQYQPPGTEYTALETATKMMTISDNTATNMIIDRLGGF- 352
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
Q +N ++ GL+ T N ++ + TT RDM L + +
Sbjct: 353 ----QVLNQRFRSWGLTDTMARNPLPDIEGTNKTTPRDMVNLFS-QIHQGGLLSMTSRDR 407
Query: 192 GLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
L I + N G G KTG ++ + + I IL
Sbjct: 408 LLRIMTETENNHLLPSGVGNGAVVAHKTGTLNIMLADVGIVDMPNGKRYILAILAERTNG 467
Query: 251 TRNKVSA 257
+ S
Sbjct: 468 NQAAESM 474
>gi|14588991|emb|CAC43229.1| TEM-85 ES-beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/273 (15%), Positives = 82/273 (30%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGKRGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
+ + ++ + + G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYMTGSQATMDERNRQIAEI 278
>gi|20302879|gb|AAM18924.1|AF495873_1 extended-spectrum beta-lactamase TEM-101 [Escherichia coli]
Length = 286
Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + ++ +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIVEIG 279
>gi|1524023|emb|CAA64682.1| beta-lactamase [Escherichia coli]
Length = 286
Score = 57.7 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDEQNRQIAEIG 279
>gi|257487910|ref|ZP_05641951.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 191
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 59/157 (37%), Gaps = 5/157 (3%)
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
++ S N A ++A S F+ MN +K LG+ T ++ G+ + T
Sbjct: 2 TLMSSENRAAASLAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYNVSTARDLT 61
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASG 225
++ K + + K + + Y NT+ V KTGFT +G
Sbjct: 62 KLVMAARKYPMLSELSTTEQKTVTFRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFTNQAG 121
Query: 226 FNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+V ++ + VIL A + T ++ +
Sbjct: 122 HCLVLLTSMANRPVSVVILDAFGKYTHFADASRIRKW 158
>gi|57232518|gb|AAW47922.1| extended-spectrum beta-lactamase TEM-138 [Salmonella enterica]
Length = 286
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPIDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|213422563|ref|ZP_03355628.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 99
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
++D NT VI N+PD AS+TKLMTA VV +L I+ +
Sbjct: 1 MVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLPLDEILKVDISQTPE---MKGV 57
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
S + S ++ N L L ++ S N A ++A
Sbjct: 58 YSRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAL 99
>gi|12005682|gb|AAG44570.1| class A beta-lactamase TEM-87 [Proteus mirabilis]
Length = 286
Score = 57.7 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/277 (15%), Positives = 83/277 (29%), Gaps = 14/277 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDH 49
++ F V + + P + ET Y LD N+G ++ P+
Sbjct: 3 IKHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEE 62
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V S + + L I S+N + MT+
Sbjct: 63 RFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCS 122
Query: 110 LLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + ++ ++ F+ +M + L A + T A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLHCWEPELNEAIPNDERDTTTPA 182
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
L + + Q+ K + K+G
Sbjct: 183 AMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRG 242
Query: 228 IVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
I+A+ + I VI + T ++ + + +G
Sbjct: 243 IIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|16798372|gb|AAL29434.1|AF427128_1 inhibitor-resistant beta-lactamase TEM-82 [Escherichia coli]
Length = 286
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDEQNRQIAEIG 279
>gi|89077562|gb|ABD60314.1| beta-lactamase [Escherichia coli]
Length = 286
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/273 (15%), Positives = 81/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGANERGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
+ + ++ + + G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYMTGSQATMDERNRQIAEI 278
>gi|33322449|gb|AAQ06951.1|AF496279_1 d-alanyl-D-alanine carboxypeptidase precursor [Lactobacillus
delbrueckii subsp. lactis]
Length = 103
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN----TRNKVSASLLSMGFYNKTDR 270
G+KTG T +G + + +I V+LGA N +R +A L+ + N T
Sbjct: 1 GLKTGTTDKAGACFAGTVKKNGHRIITVVLGAKHANSQDPSRFVQTAKLMHYVYQNYTAV 60
Query: 271 KKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEA 313
E S +V + I K
Sbjct: 61 TLKKGSSISGANTVKVPEGKETSSKVVLDKTVTIWAKQGSKLQ 103
>gi|29650764|gb|AAO85882.1| beta-lactamase TEM-120 [Klebsiella oxytoca]
Length = 286
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|46370393|gb|AAS89982.1| beta-lactamase [Escherichia coli]
Length = 286
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+++M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLRNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|13676302|gb|AAK33121.1| extended spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 277
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/271 (15%), Positives = 81/271 (29%), Gaps = 17/271 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL-GAL-DRNTRNKVSA 257
+ + ++ + + G+ + RN+ A
Sbjct: 246 ALGPDGKPSRIVVIYMTGSQATMDERNRQIA 276
>gi|16798374|gb|AAL29435.1|AF427129_1 inhibitor-resistant beta-lactamase TEM-83 [Escherichia coli]
Length = 286
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRCEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDEQNRQIAEIG 279
>gi|56181496|gb|AAV83795.1| extended-spectrum beta-lactamase TEM-136 [Klebsiella pneumoniae]
Length = 286
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/273 (15%), Positives = 78/273 (28%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGTGKRGSRGIIA 245
Query: 231 SAIQGDQS----LIAVILGALDRNTRNKVSASL 259
+ + +I G + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYTTGGQATMDERNRQIAEI 278
>gi|237846383|gb|ACR22829.1| beta-lactamase TEM-168 [Escherichia coli]
Length = 286
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 41/273 (15%), Positives = 81/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
+ + ++ + + G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYMTGSQATMDERNRQIAEI 278
>gi|194022467|gb|ACF32746.1| putative inhibitor-resistant TEM-163 beta-lactamase [Escherichia
coli]
Length = 286
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDEQNRQIAEIG 279
>gi|37693755|gb|AAQ98890.1| inhibitor-resistant beta-lactamase TEM [Escherichia coli]
Length = 286
Score = 57.3 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDEQNRQIAEIG 279
>gi|254383787|ref|ZP_04999135.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
gi|194342680|gb|EDX23646.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
Length = 443
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 48/211 (22%), Positives = 84/211 (39%), Gaps = 14/211 (6%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS--------KNASEYPPSNSTFKK 98
P S+ K MTAYV+ KK I + K + N+ +
Sbjct: 113 EQKPVAIGSVAKAMTAYVILKGHPLKKGEKGAMIDVDKAAVEDGKKESEGESTVNTLKEG 172
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
G D ++I + N + ++ FV+ MN+ +K LG++ T + + G+
Sbjct: 173 GQISEYDALAAIMIPSANNVARLLARWDAGGDQEAFVKKMNDAAKELGMTNTTYTDPSGL 232
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
+TA D L +I + GK + N N + F G+ G+KT
Sbjct: 233 DATT-VSTAEDQVKLGLKIVEMPELIAITRLPNWTDASGKSWRNYN-DLIPFNGSLGIKT 290
Query: 219 GFTCASGFNIVASAIQG----DQSLIAVILG 245
G T +G N++ +A + +Q ++ +LG
Sbjct: 291 GSTTKAGGNLLFAAEKKVGKTNQLVVGAVLG 321
>gi|161367442|gb|ABX71157.1| extended-spectrum beta-lactamase TEM-162 [Klebsiella pneumoniae]
Length = 286
Score = 57.3 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/273 (16%), Positives = 81/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQVGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
+ + I VI G+ + RN+ +A +
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQTAEI 278
>gi|186682632|ref|YP_001865828.1| beta-lactamase [Nostoc punctiforme PCC 73102]
gi|186465084|gb|ACC80885.1| beta-lactamase [Nostoc punctiforme PCC 73102]
Length = 520
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 40/236 (16%), Positives = 83/236 (35%), Gaps = 7/236 (2%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L N L+ N P L+D +TG+ + + AS K+ F +
Sbjct: 192 LISLKNAVQNLAANYPNLAPGVFLVDLDTGN-YVDVNGSTSFPAASTIKVPILLAFFQDV 250
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K L +T+ ++ + K T + ++ +++ A + +
Sbjct: 251 DAGKIRLDEMLTMQQDMVAGGSGDMGSKPAGTKYNALEVVTKMITISDNTATNMLIARLG 310
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+ +N + GL+ T N+ +Q + T+ +++A L + M
Sbjct: 311 GMEA----LNQRFRTWGLTTTTIRNSLPDLQGTNTTSPKELANLMAIVSQGNLVSMPSRD 366
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ L+I + +T G GA KTG + + + IA ++
Sbjct: 367 L-MLDILRRTQRDTLLPSGLGTGARAFHKTGDIGTMLADTGLIVVPTGKRYIASVM 421
>gi|237800749|ref|ZP_04589210.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331023607|gb|EGI03664.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 185
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 55/151 (36%), Gaps = 5/151 (3%)
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
N A ++A S F+ MN ++ LG+ T ++ G+ T ++
Sbjct: 2 NRAAASLAHSYPGGYPAFILAMNAKARALGMKHTAYVEPTGLSVFNVSTARDLTKLVMAA 61
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVAS 231
K + + K + + Y NT+ V KTGFT +G +V
Sbjct: 62 RKYPMISELSTTEQKTVTFRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLL 121
Query: 232 AIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
++ + VIL A + T ++ +
Sbjct: 122 TSMANRPVSVVILDAFGKYTHFADASRIRKW 152
>gi|126659507|ref|ZP_01730640.1| hypothetical protein CY0110_07269 [Cyanothece sp. CCY0110]
gi|126619241|gb|EAZ89977.1| hypothetical protein CY0110_07269 [Cyanothece sp. CCY0110]
Length = 422
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/275 (13%), Positives = 75/275 (27%), Gaps = 13/275 (4%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ K + +D + G P AS K+ F + + L +
Sbjct: 146 AKYPNVKPQAWF-IDLDNGA-YVTYNGTQPIPAASTIKIPVLVAFFQEVDKGNMHLDQML 203
Query: 81 TISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
T++K+ ++ +I+ S N + + + + +N
Sbjct: 204 TMTKDVMVSGSGDMQYMQENKKFPAIEVATKMIIISDNTATEMLVKQI-----GGKEVLN 258
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
K G+ T N ++ + T++ D+A L RI+ ++G K
Sbjct: 259 QRFKEWGMKHTEIHNILPDLEGTNKTSSEDLAKLLARIERGDLISTRSRDRLIAIMEGTK 318
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-----GALDRNTRNK 254
KTG + + + I + + +
Sbjct: 319 TRTLLPQGLEKQANIAHKTGDIGTIIGDAGIIDMPTGKRYIGAVFAERAYNDPAGRSLIQ 378
Query: 255 VSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV 289
+ + F R + K Q E
Sbjct: 379 DISRTVYQHFKYYQPRPVPKTVKKPVESQPQPEEK 413
>gi|21541783|gb|AAM61952.1|AF516719_1 beta-lactamase TEM-104 [Klebsiella pneumoniae]
gi|298359550|gb|ADI77428.1| inhibitor-resistant beta-lactamase [Escherichia coli]
Length = 286
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + ++ +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIVEIG 279
>gi|18652316|gb|AAL77062.1|AF468003_1 TEM-type beta lactamase [Escherichia coli]
Length = 286
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/273 (15%), Positives = 81/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGADERGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
+ + ++ + + G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYMTGSQATMDERNRQIAEI 278
>gi|213133718|gb|ACJ43258.1| TEM-1 beta-lactamase [Escherichia coli]
Length = 286
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERIRQIAEIG 279
>gi|81365640|gb|AAZ14084.2| TEM-146 [Escherichia coli]
Length = 286
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLPDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSHGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|90110162|gb|ABD90508.1| beta-lactamase BlaTEM-1b [Escherichia coli]
Length = 284
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASWQQLIDWVEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|222831972|gb|EEE70449.1| predicted protein [Populus trichocarpa]
Length = 155
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 216 MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINY 275
MKTG+ C+SGFN+VA+A +G+++L AV+LGA + R +++A LL+ GF +
Sbjct: 1 MKTGYICSSGFNLVATATRGERTLAAVVLGAQSQVQRAEIAADLLTRGFETQGLGAPSIV 60
Query: 276 IIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKES 318
++ Q ++ +V +I E+C+ + + E + +
Sbjct: 61 DLRPSEQ--VTEDVADIRPEICSEEAVAKRMKERDDEGRLILT 101
>gi|55140586|gb|AAV41835.1| TEM-136 beta-lactamase [Pseudomonas aeruginosa]
Length = 286
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVAALSFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLDRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|24431109|gb|AAN61404.1|AF466526_3 extended-spectrum beta-lactamase TEM-21 [Pseudomonas aeruginosa]
gi|2970695|gb|AAC06040.1| extended spectrum beta-lactamase TEM-21 [Morganella morganii]
gi|3282026|emb|CAA76794.1| beta-lactamase class A [Klebsiella pneumoniae]
Length = 286
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+++M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLRNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|68137406|gb|AAY85632.1| extended spectrum beta-lactamase TEM-143 [Escherichia coli]
Length = 286
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDCWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|70980484|emb|CAJ17558.1| TEM-derived extended spectrum beta-lactamase [Salmonella enterica
subsp. enterica serovar Derby]
gi|70980486|emb|CAJ17559.1| TEM-derived extended spectrum beta-lactamase [Salmonella enterica
subsp. enterica serovar Derby]
Length = 286
Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDCWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|119394773|gb|ABL74511.1| Gil1 [Citrobacter gillenii]
Length = 286
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/268 (14%), Positives = 71/268 (26%), Gaps = 14/268 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
M F + + + + P + T Y LD +G ++
Sbjct: 1 MPHFRLALIPLLTAFCLPAFAHPTTLNKVKEAESQLTARVGYAELDLTSGEILESYRLQE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + K L I S+ + MT+
Sbjct: 61 RFPMMSTFKVLLCGAVLARVDAGKERLDRRIPFSRRDLVEYSPVTEKHLTDGMTVGELCD 120
Query: 110 LLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + ++ + F++ + L A + T
Sbjct: 121 AAITMSDNTAANLLLTAIGGPQGLTAFLRTTGDRVTRLDRWEPELNEALPGDKRDTTTPE 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
L + Q+ + K +V KTG
Sbjct: 181 NMAQTLRQLLTGKILTTTSQQQLTHWMVTDKVAGPLLRSVLPAGWFIADKTGAGARGSRG 240
Query: 228 IVASAIQGDQS-LIAVILGALDRNTRNK 254
IVA+ + I VI + T +
Sbjct: 241 IVAALGPDGKPSRIVVIYITESQATMAE 268
>gi|329939447|ref|ZP_08288783.1| peptidoglycan carboxypeptidase [Streptomyces griseoaurantiacus
M045]
gi|329301676|gb|EGG45570.1| peptidoglycan carboxypeptidase [Streptomyces griseoaurantiacus
M045]
Length = 871
Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 25/63 (39%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
++ + P LS ++D +TG + D PAS TK+ TA S L
Sbjct: 488 SLAGILDPLLSDPSLGDRRGAAVVDVSTGRRLYAKDADAGLTPASTTKIATAVAALSALG 547
Query: 71 EKK 73
+
Sbjct: 548 PEH 550
>gi|218246445|ref|YP_002371816.1| beta-lactamase [Cyanothece sp. PCC 8801]
gi|218166923|gb|ACK65660.1| beta-lactamase [Cyanothece sp. PCC 8801]
Length = 425
Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/274 (13%), Positives = 75/274 (27%), Gaps = 9/274 (3%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
S K + +D + G P AS K+ F L K L
Sbjct: 154 IATQSKYAKLKPQAWF-MDLDNGA-YVSVNGSVPVPAASTIKIPVLVAFFEALDAGKIHL 211
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ + K N +K T ++ +++ A + +
Sbjct: 212 DEILIMDKAIITSGAGNMQYKPPGTKFTALETATQMIVISDNTATDML----IRRLGGKE 267
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
+N ++ G++ T N ++ + TT D++ L RI+ + ++
Sbjct: 268 ALNARFRDWGMTNTVINNRLPDLEGTNTTTPEDLSKLLARIERGEVLTLRSRDRLLGIMQ 327
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+ KTG + + I + I + N
Sbjct: 328 ETRTRTLLPQGLEKDAIISHKTGDIGSIIGDAGIIDIPNGKRYIGAVF---TSRPYNDPM 384
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVP 290
L F T + Y ++ + P
Sbjct: 385 GRALIQDFSRTTYQHFKWYQVRPKVNPPEPAKPP 418
>gi|15624079|gb|AAL03985.1|AF203816_1 extended-spectrum beta-lactamase TEM-71 [Klebsiella pneumoniae]
Length = 286
Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|186684664|ref|YP_001867860.1| beta-lactamase [Nostoc punctiforme PCC 73102]
gi|186467116|gb|ACC82917.1| beta-lactamase [Nostoc punctiforme PCC 73102]
Length = 470
Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 40/247 (16%), Positives = 78/247 (31%), Gaps = 16/247 (6%)
Query: 8 IAMAMLSNIFPFLSIAETNKL---PYYTL------LDTNTGHVIAENYPDHPWNPASLTK 58
+ ++ P ++ K Y L LD +TG + + D + AS K
Sbjct: 188 LFAGVIPMHSPMKALEPQIKALMNRYSFLKTGMFFLDLDTGDYL-DVGGDRVFPAASTIK 246
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
L F L K L + + ++ + + + G T + +I S N
Sbjct: 247 LPILIAFFQDLDAGKVTLQENLIMRRDLVTNGSGTMQYERVGKKYTALETITKMITISDN 306
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
I + L V +N +N GL T + ++ + T+++DMA + +
Sbjct: 307 TATNMIIDRL-----GGVTKLNQRFRNWGLKDTVIRHLLADLRGTNTTSSQDMARVLALV 361
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + ++ A KTG + + +
Sbjct: 362 VNNKLVSPQSREQALDILRHTTIHTLLPAGLGKGAVIANKTGDIGFLIGDAGFVTMPNGK 421
Query: 238 SLIAVIL 244
+A I
Sbjct: 422 RYLAAIF 428
>gi|40737712|gb|AAR89359.1| beta-lactamase TEM-128 [Escherichia coli]
Length = 286
Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGEHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|301301062|ref|ZP_07207222.1| putative D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|300851332|gb|EFK79056.1| putative D-alanyl-D-alanine carboxypeptidase DacA [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 257
Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/187 (18%), Positives = 74/187 (39%), Gaps = 13/187 (6%)
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK----KYPNTNWAVGTFL-GAD 214
+ +A+DMAI++ ++ D+P+ ++ +++ ++ + NTN + D
Sbjct: 30 NSENELSAQDMAIIATKLIKDYPEILNTTKLQNVQFNDRGKTTSVTNTNRLLSDNTFQVD 89
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS-----MGFYNKTD 269
G+KTG + A+G I A+ + +I VI+GA + R + + LL+ +
Sbjct: 90 GLKTGTSDAAGECITATTSKYGSRIITVIIGANSDSQRFEQTKLLLNNISNSYNYTVIGA 149
Query: 270 RKKINYIIKDFYQQNLSNEVPNISEEVCTTQ--KEIINYNTQMKEAKDKESHFIDFEKIT 327
+ I I + +P ++ KE + K + E +K
Sbjct: 150 GQPIPNISNVKILKGKQKTLPIAMQKTTGLWLNKEQGTQDISAKFHPNSE-IIAPIKKYQ 208
Query: 328 LLKNKIT 334
+
Sbjct: 209 NVGKVTL 215
>gi|21541785|gb|AAM61953.1|AF516720_1 beta-lactamase TEM-105 [Escherichia coli]
Length = 286
Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCNAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|38456216|gb|AAR21068.1| beta-lactamase TEM-129 [Streptococcus pneumoniae]
Length = 286
Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAIA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|319786192|ref|YP_004145667.1| beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
gi|317464704|gb|ADV26436.1| Beta-lactamase [Pseudoxanthomonas suwonensis 11-1]
Length = 306
Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/207 (13%), Positives = 57/207 (27%), Gaps = 2/207 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+LD +G + + P+ + S K M + V + L + + +
Sbjct: 62 VLDAGSGRHLGGHRPEERFPMCSTFKAMLSAAVLAQADRGALSLDERLPVGEADIVSHSP 121
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ + +
Sbjct: 122 VTRRHVGKDVTVRDLCRATMTTSDNGAANLLLGRIGGTAGLTAFLRGIGDRVTRSDRMEP 181
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ L+ + D Q+ + + A
Sbjct: 182 EMNAFAPGDPRDTTSPRAMAGSLARCVLGDVLSPASRMQLADWLVDNGTGDDCLRAGIGP 241
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQ 237
G KTG A N +A A Q
Sbjct: 242 GWRVGDKTGGDGAGTRNDIAVAWPLGQ 268
>gi|4557166|gb|AAD22538.1|AF104441_1 extended spectrum beta-lactamase TEM-53 [Klebsiella pneumoniae]
Length = 286
Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|83031783|gb|ABB97007.1| beta-lactamase TEM-55 [Escherichia coli]
Length = 286
Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAEPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|302595335|ref|YP_003829050.1| beta-lactamase class A [Escherichia coli]
gi|302310071|gb|ADL13944.1| TEM-33 [Escherichia coli]
Length = 286
Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|60115532|ref|YP_209323.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|45758090|gb|AAS76302.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
Length = 269
Score = 56.5 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/262 (14%), Positives = 73/262 (27%), Gaps = 15/262 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVILGALDRN 250
+ + ++ + N
Sbjct: 246 ALGPDGKPSRIVVIYTDGESGN 267
>gi|7672821|gb|AAF66653.1| class A beta-lactamase [Proteus mirabilis]
Length = 286
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 43/277 (15%), Positives = 84/277 (30%), Gaps = 14/277 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDH 49
++ F V + + P + ET Y LD N+G ++ P+
Sbjct: 3 IKHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEE 62
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V S + + L I S+N + MT+
Sbjct: 63 RFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCS 122
Query: 110 LLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + ++ ++ F+ +M + L A + T A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPA 182
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
L + + Q+ K + K+G +
Sbjct: 183 AMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRG 242
Query: 228 IVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
I+A+ + I VI + T ++ + + +G
Sbjct: 243 IIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|16798370|gb|AAL29433.1|AF427127_1 inhibitor-resistant beta-lactamase TEM-81 [Escherichia coli]
Length = 286
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ +
Sbjct: 66 MLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAV 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|27374443|gb|AAD33116.2|AF091113_1 beta-lactamase [Proteus mirabilis]
Length = 286
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCIPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSCGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|225698232|gb|ACO07310.1| CMT-type extended-spectrum beta-lactamase [Escherichia coli]
Length = 286
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|270311272|gb|ACZ72747.1| beta-lactamase [Achromobacter denitrificans]
gi|270311274|gb|ACZ72748.1| beta-lactamase [Elizabethkingia meningoseptica]
gi|270311276|gb|ACZ72749.1| beta-lactamase [Chryseobacterium gleum]
Length = 286
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLICGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|8052261|emb|CAB92324.1| TEM-68 ES-beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 74/256 (28%), Gaps = 15/256 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASKRGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL 244
+ + ++ + +
Sbjct: 246 ALGPDGKPSRIVVIYM 261
>gi|6176548|gb|AAF05614.1|AF190695_1 inhibitor-resistant beta-lactamase TEM-77 [Escherichia coli]
gi|6688989|emb|CAB65358.1| beta-lactamase IRT-18 [Proteus mirabilis]
Length = 286
Score = 56.1 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSSGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|161016657|emb|CAO98721.1| TEM-15 B-lactamase [Haemophilus parainfluenzae]
Length = 286
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|121485913|gb|ABM54870.1| beta-lactamase TEM-160 [Proteus mirabilis]
Length = 286
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|43798|emb|CAA45828.1| extended-spectrum beta-lactamase TEM-3 [Klebsiella pneumoniae]
Length = 286
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|15149328|gb|AAK85244.1| inhibitor resistant TEM beta-lactamase [Escherichia coli]
Length = 286
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|3282028|emb|CAA76795.1| beta-lactamase class A [Klebsiella pneumoniae]
Length = 286
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGGSERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|6007799|gb|AAF01046.1|AF188199_1 beta-lactamase variant TEM-70 [Escherichia coli]
Length = 286
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASQQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|105958774|gb|ABF81660.1| beta-lactamase [Cloning vector pRKW2]
gi|218533933|gb|ACK87037.1| beta-lactamase [Cloning vector AbVec-hIgG1]
gi|218533936|gb|ACK87039.1| beta-lactamase [Cloning vector AbVec-hIgKappa]
gi|220062124|gb|ACL79637.1| beta lactamase [pBR322 based IG-lambda expression vector]
Length = 286
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRDDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|2118168|pir||S60310 extended spectrum beta-lactamase CAZ-2 - Klebsiella pneumoniae
gi|296952|emb|CAA46344.1| extended spectrum beta-lactamase CAZ-2 [Klebsiella pneumoniae]
Length = 286
Score = 56.1 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|53987101|gb|AAV27316.1| beta-lactamase [Cloning vector p713-909]
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQSL-IAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPFRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|6176546|gb|AAF05613.1|AF190694_1 inhibitor-resistant beta-lactamase TEM-76 [Escherichia coli]
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMGDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|42540511|gb|AAS19171.1| extended spectrum beta-lactamase TEM-133 [Klebsiella pneumoniae]
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|170077878|ref|YP_001734516.1| beta-lactamase, putative [Synechococcus sp. PCC 7002]
gi|169885547|gb|ACA99260.1| beta-lactamase, putative [Synechococcus sp. PCC 7002]
Length = 387
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 8/234 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ ++ T +D +TG + + D P + AS K+ F +
Sbjct: 113 LAETTQAAIAADSTLDA-SLLFVDLDTGEYL-DVAGDRPLSAASTIKIPILVAFFEAVDS 170
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
K L +T+++ +K + + ++++ A + L
Sbjct: 171 GKVNLDDSLTLTQEVIGGGSGGMQYKTPGSTYTALYTATEMSVNSDNTATNMITELLGGN 230
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ G A +A ++ F+I
Sbjct: 231 AVLNAKFQQWGMTQTQLNNPLPDLEGTNLTSAKDLAHLLARVNQGEILSVRSRDRLFRIM 290
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL 244
G + P GAD + KTG + + + + +A I
Sbjct: 291 GDTSNDRLLP-----QSLGQGADIVHKTGDIGSIIGDAGIVDLPNGKRYVAAIF 339
>gi|2995959|gb|AAD13350.1| beta-lactamase [Expression vector pPK113]
gi|4808836|gb|AAD29959.1| beta-lactamase [Expression vector pPK115]
gi|5639950|gb|AAD45907.1| beta-lactamase [Cloning vector pPK124]
gi|22774036|gb|AAN07186.1| beta-lactamase [Cloning vector pIA423]
gi|27573252|gb|AAO20026.1| beta lactamase [Expression vector pETAT-1]
gi|27573255|gb|AAO20028.1| beta lactamase [Expression vector pETAT-2]
gi|27573258|gb|AAO20030.1| beta lactamase [Expression vector pNB-3]
gi|134105580|gb|ABO60931.1| beta-lactamase [Expression vector pET21a-LIC]
gi|145307007|gb|ABP57189.1| beta-lactamase [Expression vector pET32a-LIC]
gi|164470782|gb|ABY58157.1| beta lactamase [Expression vector pTEV4]
gi|164470785|gb|ABY58159.1| beta lactamase [Expression vector pTEV3]
gi|164470788|gb|ABY58161.1| beta lactamase [Expression vector pTEV5]
gi|164470791|gb|ABY58163.1| beta lactamase [Expression vector pKLD66]
gi|187969496|gb|ACD44845.1| ampicillin resistance protein [Expression vector pGGWA]
gi|187969501|gb|ACD44849.1| ampicillin resistance protein [Expression vector pHGGWA]
gi|187969506|gb|ACD44853.1| ampicillin resistance protein [Expression vector pHGWA]
gi|187969511|gb|ACD44857.1| ampicillin resistance protein [Expression vector pHMGWA]
gi|187969516|gb|ACD44861.1| ampicillin resistance protein [Expression vector pHNGWA]
gi|187969521|gb|ACD44865.1| ampicillin resistance protein [Expression vector pHXGWA]
gi|187969526|gb|ACD44869.1| ampicillin resistance protein [Expression vector pMGWA]
gi|187969531|gb|ACD44873.1| ampicillin resistance protein [Expression vector pNGWA]
gi|187969536|gb|ACD44877.1| ampicillin resistance protein [Expression vector pXGWA]
gi|187969541|gb|ACD44881.1| ampicillin resistance protein [Expression vector p0GWA]
gi|219646791|gb|ACL30944.1| beta-lactamase [Cloning vector pJM2]
gi|282161296|gb|ADA79630.1| ampicillin resistance protein [Escherichia coli]
gi|310686582|gb|ADP02957.1| Bla [Cloning vector pETL7]
gi|310686592|gb|ADP02965.1| Bla [Cloning vector pLR4]
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|46370397|gb|AAS89984.1| beta-lactamase [Enterobacter aerogenes]
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGTGKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|2293126|gb|AAB68655.1| beta-lactamase [unidentified cloning vector]
gi|2293129|gb|AAB68657.1| beta-lactamase [unidentified cloning vector]
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 45/275 (16%), Positives = 83/275 (30%), Gaps = 16/275 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A H T M
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAI-PNDERHTTMPVAM 184
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIV 229
A ++ T + Q ++ K K+G I+
Sbjct: 185 ATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGII 244
Query: 230 ASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
A+ + I VI + T ++ + + +G
Sbjct: 245 AALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|284468332|gb|ADB90239.1| beta-lactamase TEM-176 [Escherichia coli]
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K +V K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSVLPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|261414308|gb|ACX83572.1| extended spectrum beta-lactamase TEM-1 [Morganella morganii]
Length = 282
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 5 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 65 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 124
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 125 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 184
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 185 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 244
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 245 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 278
>gi|254966909|gb|ACT97477.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF1DD01_19]
Length = 285
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|238863894|gb|ACR66223.1| beta-lactamase TEM-1 [Raoultella terrigena]
gi|238863896|gb|ACR66224.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|238863898|gb|ACR66225.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863900|gb|ACR66226.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|238863902|gb|ACR66227.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863904|gb|ACR66228.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|238863906|gb|ACR66229.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|238863908|gb|ACR66230.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863910|gb|ACR66231.1| beta-lactamase TEM-1 [Raoultella terrigena]
gi|238863912|gb|ACR66232.1| beta-lactamase TEM-1 [Raoultella terrigena]
gi|238863914|gb|ACR66233.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|238863916|gb|ACR66234.1| beta-lactamase TEM-1 [Raoultella terrigena]
gi|238863918|gb|ACR66235.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863920|gb|ACR66236.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863922|gb|ACR66237.1| beta-lactamase TEM-1 [Raoultella terrigena]
gi|238863924|gb|ACR66238.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|238863926|gb|ACR66239.1| beta-lactamase TEM-1 [Cronobacter sakazakii]
gi|238863928|gb|ACR66240.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863930|gb|ACR66241.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863932|gb|ACR66242.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863934|gb|ACR66243.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863936|gb|ACR66244.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|238863938|gb|ACR66245.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|238863940|gb|ACR66246.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863942|gb|ACR66247.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863944|gb|ACR66248.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863946|gb|ACR66249.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863948|gb|ACR66250.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863950|gb|ACR66251.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863952|gb|ACR66252.1| beta-lactamase TEM-1 [Klebsiella sp. 49]
gi|238863954|gb|ACR66253.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|238863956|gb|ACR66254.1| beta-lactamase TEM-1 [Klebsiella sp. 51]
gi|238863958|gb|ACR66255.1| beta-lactamase TEM-1 [Klebsiella sp. 52]
gi|238863960|gb|ACR66256.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863962|gb|ACR66257.1| beta-lactamase TEM-1 [Klebsiella oxytoca]
gi|238863964|gb|ACR66258.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863966|gb|ACR66259.1| beta-lactamase TEM-1 [Escherichia coli]
gi|238863968|gb|ACR66260.1| beta-lactamase TEM-1 [Escherichia coli]
Length = 285
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 5 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 65 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 124
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 125 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 184
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 185 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 244
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 245 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 278
>gi|157676818|emb|CAJ32372.1| beta-lactamase [Escherichia coli]
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 KTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|44194076|gb|AAS46844.1| TEM-1 beta-lactamase [Serratia marcescens]
gi|44194080|gb|AAS46846.1| TEM-1 beta-lactamase [Serratia marcescens]
gi|44194082|gb|AAS46847.1| TEM-1 beta-lactamase [Serratia marcescens]
gi|44194084|gb|AAS46848.1| TEM-1 beta-lactamase [Serratia marcescens]
Length = 281
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|44194078|gb|AAS46845.1| TEM-1 beta-lactamase [Serratia marcescens]
Length = 282
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|34099626|gb|AAQ57123.1| beta-lactamase TEM-128 [Acinetobacter baumannii]
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|15149330|gb|AAK85245.1| TEM beta-lactamase [Escherichia coli]
gi|15149334|gb|AAK85247.1| TEM beta-lactamase [Escherichia coli]
gi|15149336|gb|AAK85248.1| TEM beta-lactamase [Escherichia coli]
gi|15149338|gb|AAK85249.1| TEM beta-lactamase [Escherichia coli]
gi|15149340|gb|AAK85250.1| TEM beta-lactamase [Escherichia coli]
gi|15149344|gb|AAK85252.1| TEM beta-lactamase [Escherichia coli]
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|61967136|gb|AAX56615.1| beta-lactamase TEM-141 [Enterobacter cloacae]
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVEDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|114881106|ref|YP_758647.1| Beta lactamase [Pseudomonas aeruginosa]
gi|168998381|ref|YP_001687658.1| beta-lactamase TEM precursor [Birmingham IncP-alpha plasmid]
gi|190014891|ref|YP_001965403.1| Beta-lactamase [Escherichia coli]
gi|3859496|gb|AAC77431.1| beta lactamase [Pseudomonas aeruginosa]
gi|6634546|emb|CAB64361.1| beta lactamase TEM-2 [Stenotrophomonas maltophilia]
gi|8117211|dbj|BAA96316.1| beta lactamase [Shuttle vector pNIC6010]
gi|8117218|dbj|BAA96322.1| beta lactamase [Shuttle vector pNIC6011]
gi|8117225|dbj|BAA96328.1| beta lactamase [Shuttle vector pNIC6012]
gi|21998651|emb|CAA38429.1| penicillinase TEM-2 [Pseudomonas aeruginosa]
gi|42718127|gb|AAS38487.1| beta-lactamase [Proteus mirabilis]
gi|53794412|gb|AAU93763.1| Bla [Integration vector pJK202]
gi|109389612|gb|ABG29531.1| Beta-lactamase [Escherichia coli]
gi|114703517|emb|CAK12637.1| Beta Lactamase [Pseudomonas aeruginosa]
gi|157277486|tpe|CAJ85677.1| TPA: beta lactamase [Birmingham IncP-alpha plasmid]
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|509142|emb|CAA48214.1| beta-lactamase,human IgG3 hinge fusion [synthetic construct]
Length = 356
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|10955180|ref|NP_052173.1| beta-lactamase [Neisseria gonorrhoeae]
gi|18466603|ref|NP_569411.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|19774241|ref|NP_608310.1| TEM beta-lactamase [Klebsiella pneumoniae]
gi|27383504|ref|NP_775035.1| BlaTEM1 [Citrobacter freundii]
gi|38638187|ref|NP_943295.1| beta-lactamase [Escherichia coli]
gi|41056932|ref|NP_957565.1| hypothetical protein pC15-1a_020 [Escherichia coli]
gi|58000324|ref|YP_190222.1| beta-lactamase [Escherichia coli]
gi|58383274|ref|YP_194844.1| beta-lactamase TEM1 [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|58383307|ref|YP_194879.1| beta-lactamase TEM1 [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|133756243|ref|YP_001096393.1| hypothetical protein pLEW517_p68 [Escherichia coli]
gi|145639564|ref|ZP_01795168.1| beta-lactamase [Haemophilus influenzae PittII]
gi|152973631|ref|YP_001338671.1| beta-lactamase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|152973829|ref|YP_001338868.1| putative TEM-1 beta-lactamase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|160431621|ref|YP_001551788.1| beta-lactamase TEM precursor [Salmonella enterica subsp. enterica
serovar Dublin]
gi|160431829|ref|YP_001551943.1| beta-lactamase TEM precursor [Salmonella enterica subsp. enterica
serovar Choleraesuis]
gi|161867939|ref|YP_001598120.1| Bla [Salmonella enterica subsp. enterica serovar Choleraesuis]
gi|162960937|ref|YP_001621483.1| beta-lactamase TEM [Haemophilus influenzae 86-028NP]
gi|169303001|ref|YP_001693174.1| beta-lactamase TEM precursor [Escherichia coli]
gi|170650838|ref|YP_001740012.1| beta-lactamase TEM [Escherichia coli SMS-3-5]
gi|187729587|ref|YP_001874868.1| beta-lactamase [Providencia rettgeri]
gi|187736871|ref|YP_001816609.1| BlaTEM-1 [Escherichia coli 1520]
gi|189009193|ref|YP_001928075.1| TEM-1 [Klebsiella pneumoniae]
gi|190570395|ref|YP_001966385.1| BlaTEM beta-lactamase [Salmonella typhimurium]
gi|194451020|ref|YP_002045448.1| beta-lactamase TEM [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194733784|ref|YP_002112926.1| beta-lactamase TEM [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|209901184|ref|YP_002286965.1| beta-lactamase [Klebsiella pneumoniae]
gi|209947572|ref|YP_002291069.1| beta-lactamase TEM precursor [Haemophilus influenzae]
gi|213155647|ref|YP_002317692.1| beta-lactamase TEM [Acinetobacter baumannii AB0057]
gi|216967802|ref|YP_002333310.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|218548995|ref|YP_002382786.1| Beta-lactamase TEM [Escherichia fergusonii ATCC 35469]
gi|218561671|ref|YP_002394583.1| Beta-lactamase TEM precursor (Penicillinase) [Escherichia
fergusonii ATCC 35469]
gi|218707900|ref|YP_002415419.1| beta-lactamase [Escherichia coli UMN026]
gi|226807677|ref|YP_002791371.1| beta-lactamase TEM-1 [Enterobacter cloacae]
gi|226809987|ref|YP_002791681.1| beta-lactamase TEM-1 [Enterobacter cloacae]
gi|229847052|ref|ZP_04467158.1| beta-lactamase TEM precursor [Haemophilus influenzae 7P49H1]
gi|256367543|ref|YP_003108102.1| beta-lactamase TEM-1 precursor [Escherichia coli]
gi|256367643|ref|YP_003108210.1| beta-lactamase TEM-1 precursor [Escherichia coli]
gi|260752133|ref|YP_003237648.1| TEM-1 beta-lactamase [Escherichia coli O111:H- str. 11128]
gi|261888727|ref|YP_003264416.1| beta-lactamase tem precursor [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|284000140|ref|YP_003377827.1| beta-lactamase blaTEM1 [Escherichia coli O26:H-]
gi|291289025|ref|YP_003517528.1| beta-lactamase [Klebsiella pneumoniae]
gi|294496707|ref|YP_003560400.1| TEM betalactamase [Klebsiella pneumoniae]
gi|300818450|ref|ZP_07098659.1| beta-lactamase [Escherichia coli MS 107-1]
gi|300904914|ref|ZP_07122735.1| beta-lactamase [Escherichia coli MS 84-1]
gi|300924647|ref|ZP_07140599.1| beta-lactamase [Escherichia coli MS 182-1]
gi|300939490|ref|ZP_07154151.1| beta-lactamase [Escherichia coli MS 21-1]
gi|300946710|ref|ZP_07160963.1| beta-lactamase [Escherichia coli MS 116-1]
gi|300957338|ref|ZP_07169559.1| beta-lactamase [Escherichia coli MS 175-1]
gi|300973645|ref|ZP_07172310.1| beta-lactamase [Escherichia coli MS 200-1]
gi|301307411|ref|ZP_07213411.1| beta-lactamase [Escherichia coli MS 124-1]
gi|301329877|ref|ZP_07222602.1| beta-lactamase [Escherichia coli MS 78-1]
gi|301594945|ref|ZP_07239953.1| beta-lactamase [Acinetobacter baumannii AB059]
gi|302595552|ref|YP_003829170.1| beta-lactamase [Escherichia coli]
gi|302651688|ref|YP_003829069.1| beta-lactamase [Escherichia coli]
gi|305696861|ref|YP_003864176.1| beta-lactamase tem precursor [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|310286414|ref|YP_003937675.1| beta-lactamase TEM-1 [Escherichia coli]
gi|317054653|ref|YP_004119720.1| TEM-1 beta-lactamase [Escherichia coli]
gi|317054667|ref|YP_004119734.1| TEM-1 beta-lactamase [Escherichia coli]
gi|324120166|ref|YP_004249865.1| TEM beta-lactamase [Klebsiella pneumoniae]
gi|331680829|ref|ZP_08381469.1| beta-lactamase [Escherichia coli H299]
gi|332668529|ref|YP_004455307.1| beta-lactamase [Enterobacter sp. W001]
gi|332875070|ref|ZP_08442907.1| beta-lactamase [Acinetobacter baumannii 6014059]
gi|50401825|sp|P62593|BLAT_ECOLX RecName: Full=Beta-lactamase TEM; AltName: Full=IRT-4; AltName:
Full=Penicillinase; AltName: Full=TEM-1; AltName:
Full=TEM-16/CAZ-7; AltName: Full=TEM-2; AltName:
Full=TEM-24/CAZ-6; AltName: Full=TEM-3; AltName:
Full=TEM-4; AltName: Full=TEM-5; AltName: Full=TEM-6;
AltName: Full=TEM-8/CAZ-2; Flags: Precursor
gi|50401826|sp|P62594|BLAT_SALTI RecName: Full=Beta-lactamase TEM; AltName: Full=Penicillinase;
Flags: Precursor
gi|4959725|gb|AAD34466.1|AF136442_2 beta-lactamase [Cloning vector pScosBC1]
gi|6007801|gb|AAF01047.1|AF188200_1 beta-lactamase variant TEM-1D [Escherichia coli]
gi|6010634|gb|AAF01198.1|AF179892_2 beta-lactamase [Cloning vector pLM3]
gi|10185696|gb|AAG14408.1|AF188331_7 beta-lactamase [Shigella flexneri]
gi|11036939|gb|AAG27428.1|AF288620_1 beta-lactamase [Cloning vector pdeltaE1sp1A(CMV-GFP)]
gi|12056589|gb|AAG47953.1|AF308739_2 beta-lactamase [Cloning vector pLM99]
gi|12056592|gb|AAG47955.1|AF308740_2 beta-lactamase [Cloning vector pLM100]
gi|12056594|gb|AAG47956.1|AF308741_1 beta-lactamase [Cloning vector pLM101]
gi|12802445|gb|AAK07886.1|AF316553_1 beta-lactamase [Cloning vector pJH370]
gi|12802448|gb|AAK07888.1|AF316554_1 beta-lactamase [Cloning vector pJH391]
gi|12802452|gb|AAK07891.1|AF316555_2 beta-lactamase [Cloning vector pXZ240]
gi|14165161|gb|AAK55408.1|AF376056_3 beta-lactamase [Cloning vector pTZ110]
gi|14487951|gb|AAK63814.1|AF383623_5 beta-lactamase [Cloning vector pREX1LC]
gi|15294080|gb|AAK95217.1|AF403737_2 beta-lactamase [Expression and selection vector pKS336]
gi|16798378|gb|AAL29437.1|AF427131_1 beta-lactamase TEM1D [Escherichia coli]
gi|16798380|gb|AAL29438.1|AF427132_1 beta-lactamase TEM1E [Escherichia coli]
gi|16798382|gb|AAL29439.1|AF427133_1 beta-lactamase TEM1F [Escherichia coli]
gi|19698432|gb|AAL93144.1|AF479774_8 TEM beta-lactamase [Klebsiella pneumoniae]
gi|33323513|gb|AAQ07483.1|AF503408_7 Bla [Enterobacteria phage P7]
gi|43713|emb|CAA23886.1| beta-lactamase [Escherichia coli]
gi|58031|emb|CAA47409.1| bla gene [synthetic construct]
gi|58034|emb|CAA47411.1| bla gene from [synthetic construct]
gi|207765|gb|AAA72797.1| beta-lactamase [unidentified cloning vector]
gi|208646|gb|AAA99914.1| beta-lactamase [Cloning vector pNO3097]
gi|208985|gb|AAA73222.1| beta-lactamase [unidentified cloning vector]
gi|209523|gb|AAA72075.1| beta-lactamase [unidentified cloning vector]
gi|220934|dbj|BAA00795.1| ampicillin resistance protein [Shuttle vector pHY320PLK]
gi|220965|dbj|BAA14388.1| Ap resistance protein [synthetic construct]
gi|408371|gb|AAA67142.1| beta-lactamase [synthetic construct]
gi|450835|gb|AAA61618.1| beta-lactamase [Cloning vector pKSM710]
gi|455370|gb|AAB59737.1| beta-lactamase [Cloning vector pBR322]
gi|456553|gb|AAA73387.1| beta-lactamase [Cosmid vector pIB8]
gi|535431|gb|AAA73461.1| beta-lactamase [Cloning vector pDO192]
gi|535434|gb|AAA73463.1| beta-lactamase [Cloning vector pDO193]
gi|537615|gb|AAA67261.1| ampicillin resistance [Cloning vector pCOS5]
gi|550456|gb|AAA67264.1| beta-lactamase [Shuttle vector pSP189]
gi|554543|gb|AAA73052.1| beta-lactamase [unidentified cloning vector]
gi|559513|emb|CAA86303.1| Beta-Lactamase [Pichia pastoris]
gi|595689|gb|AAA57075.1| beta-lactamase [unidentified cloning vector]
gi|595695|gb|AAA57079.1| beta-lactamase [unidentified cloning vector]
gi|595698|gb|AAA57081.1| beta-lactamase [unidentified cloning vector]
gi|595701|gb|AAA57083.1| beta-lactamase [unidentified cloning vector]
gi|595707|gb|AAA57087.1| beta-lactamase [unidentified cloning vector]
gi|595711|gb|AAA57090.1| beta-lactamase [unidentified cloning vector]
gi|595715|gb|AAA57093.1| beta-lactamase [unidentified cloning vector]
gi|595719|gb|AAA57096.1| beta-lactamase [unidentified cloning vector]
gi|595723|gb|AAA57099.1| beta-lactamase [unidentified cloning vector]
gi|595727|gb|AAA57102.1| beta-lactamase [unidentified cloning vector]
gi|595731|gb|AAA57105.1| beta-lactamase [unidentified cloning vector]
gi|595735|gb|AAA57108.1| beta-lactamase [unidentified cloning vector]
gi|595739|gb|AAA57111.1| beta-lactamase [unidentified cloning vector]
gi|595743|gb|AAA57114.1| beta-lactamase [unidentified cloning vector]
gi|595747|gb|AAC53597.1| beta-lactamase [unidentified cloning vector]
gi|595750|gb|AAC53599.1| beta-lactamase [unidentified cloning vector]
gi|595754|gb|AAC53602.1| beta-lactamase [unidentified cloning vector]
gi|595757|gb|AAA56727.1| beta-lactamase [unidentified cloning vector]
gi|595760|gb|AAA56729.1| beta-lactamase [unidentified cloning vector]
gi|595773|gb|AAA56737.1| beta-lactamase [unidentified cloning vector]
gi|671746|emb|CAA59047.1| beta-lactamase [synthetic construct]
gi|747954|gb|AAB05650.1| beta-lactamase [Cloning vector pACpET24]
gi|757531|emb|CAA59965.1| beta-lactamase [synthetic construct]
gi|808935|emb|CAA23426.1| unnamed protein product [synthetic construct]
gi|847864|gb|AAC53638.1| beta-lactamase [Cloning vector pZC320]
gi|885958|gb|AAA70411.1| beta-lactamase [Cloning vector pCG1408]
gi|915412|gb|AAB39922.1| beta-lactamase [Cloning vector pACT2]
gi|975874|gb|AAB41333.1| beta-lactamase [Cloning vector pOTSf1Blu]
gi|1000355|gb|AAA76717.1| beta-lactamase [synthetic construct]
gi|1004350|gb|AAA77665.1| amp protein [synthetic construct]
gi|1041779|gb|AAA79995.1| beta-lactamase [Cloning vector pCALn]
gi|1101784|gb|AAA82948.1| beta-lactamase [Cloning vector pINIIIompA3]
gi|1101791|gb|AAA82953.1| beta-lactamase [Cloning vector pOR262]
gi|1117911|gb|AAC53683.1| ampicillin resistance gene [synthetic construct]
gi|1164903|emb|CAA64064.1| beta-lactamase (pBr323 der.) [synthetic construct]
gi|1185564|gb|AAB40298.1| beta-lactamase [Cloning vector pDG1661]
gi|1185570|gb|AAB40303.1| beta-lactamase [Cloning vector pDG1662]
gi|1185577|gb|AAB40309.1| beta-lactamase [Cloning vector pDG1728]
gi|1185583|gb|AAB40314.1| beta-lactamase [Cloning vector pDG1730]
gi|1185592|gb|AAB40322.1| beta-lactamase [Cloning vector pDG1663]
gi|1185600|gb|AAB40329.1| beta-lactamase [Cloning vector pDG1664]
gi|1185609|gb|AAB40337.1| beta-lactamase [Cloning vector pDG1729]
gi|1185617|gb|AAB40344.1| beta-lactamase [Cloning vector pDG1731]
gi|1197597|gb|AAA93353.1| beta-lactamase [synthetic construct]
gi|1197853|gb|AAA88822.1| beta-lactamase [Cloning vector pJDC406]
gi|1236615|gb|AAB01102.1| beta-lactamase [Cloning vector pAM120]
gi|1381229|gb|AAB05749.1| beta-lactamase [Cloning vector cLHYGpk]
gi|1399173|gb|AAC97980.1| beta-lactamase [Shigella flexneri]
gi|1490534|gb|AAC53664.1| beta-lactamase [Cloning vector pBAD-GFPuv]
gi|1515099|emb|CAA68911.1| beta-lactamase [synthetic construct]
gi|1515103|emb|CAA68858.1| beta-lactamase [synthetic construct]
gi|1628644|gb|AAC25435.1| Bla [synthetic construct]
gi|1633039|gb|AAB17398.1| beta-lactamase [Cloning vector pCALc]
gi|1633042|gb|AAB17400.1| beta-lactamase [Cloning vector pCALkc]
gi|1684864|gb|AAB36548.1| beta lactamase [Cloning vector pRNA8]
gi|1699062|gb|AAB37347.1| beta-lactamase [Cloning vector pGEX-6P-1]
gi|1699066|gb|AAB37350.1| beta-lactamase [Cloning vector pGEX-6P-2]
gi|1699070|gb|AAB37353.1| beta-lactamase [Cloning vector pGEX-6P-3]
gi|1777423|gb|AAB40517.1| beta-lactamase [Neisseria gonorrhoeae]
gi|1935051|gb|AAB51769.1| beta-lactamase [synthetic construct]
gi|2190700|gb|AAB64386.1| beta-lactamase [unidentified cloning vector]
gi|2257573|dbj|BAA21464.1| beta-lactamase [Cloning vector pMW118]
gi|2257576|dbj|BAA21466.1| beta-lactamase [Cloning vector pMW119]
gi|2258140|emb|CAA68966.1| beta-lactamase [Plasmid pPV]
gi|2293120|gb|AAB68651.1| beta-lactamase [unidentified cloning vector]
gi|2501756|gb|AAC48875.1| beta-lactamase [Cloning vector pAL-Z]
gi|2501804|gb|AAC53717.1| beta-lactamase [Cloning vector pAL-F]
gi|2815580|gb|AAB97881.1| beta-lactamase [plasmid pETHIS-1]
gi|2909369|emb|CAA11557.1| beta lactamase [synthetic construct]
gi|3002497|gb|AAC08716.1| beta-lactamase [Expression vector pGH/F2.2-163]
gi|3002502|gb|AAC08720.1| beta-lactamase [Expression vector pGH/F2.79-242]
gi|3002506|gb|AAC08723.1| beta-lactamase [Expression vector pGH/F2.159-327]
gi|3002510|gb|AAC08726.1| beta-lactamase [Expression vector pGH/F2.2-242]
gi|3002514|gb|AAC08729.1| beta-lactamase [Expression vector pGH/F2.79-327]
gi|3002518|gb|AAC08732.1| beta-lactamase [Expression vector pGH/F2.2-327]
gi|3328367|gb|AAC26830.1| beta-lactamase [Cloning vector pWEB]
gi|3907624|gb|AAC79082.1| beta lactamase [Transposon delivery vector pUTkm1]
gi|3983118|gb|AAC83810.1| beta-lactamase [Expression vector pGST-parallel1]
gi|4416097|gb|AAD20229.1| beta lactamase [Cloning vector pLXRN]
gi|4838521|gb|AAD31023.1| beta-lactamase [Cloning vector pFB]
gi|4838523|gb|AAD31024.1| beta-lactamase [Cloning vector pFBneo]
gi|4884733|gb|AAD31793.1| beta-lactamase precursor [Neisseria meningitidis]
gi|5640093|emb|CAB51570.1| beta lactamase [Expression vector pIVET]
gi|6318570|gb|AAF06953.1| beta-lactamase [Cloning vector YEP46]
gi|7415880|dbj|BAA93577.1| beta-lactamase [Cloning vector pGFPTA]
gi|8164199|gb|AAF73968.1| beta-lactamase [Cloning vector pXPG]
gi|8250021|emb|CAB93485.1| penicillin beta-lactamase [Cloning vector pBRINT-TsCm]
gi|8250031|emb|CAB93490.1| penicillin beta-lactamase [Cloning vector pBRINT-TsGm]
gi|8250037|emb|CAB93495.1| penicillin beta-lactamase [Cloning vector pBRINT-TsKm]
gi|9438225|gb|AAF86568.1| beta-lactamase [Cloning vector pZR80]
gi|9836697|gb|AAG00264.1| beta-lactamase [synthetic construct]
gi|9836700|gb|AAG00266.1| beta-lactamase [synthetic construct]
gi|9836703|gb|AAG00268.1| beta-lactamase [synthetic construct]
gi|9931484|gb|AAG02190.1| beta-lactamase [Cloning vector pFB-ERV]
gi|11061049|emb|CAC14439.1| penicillin beta-lactamase [Cloning vector pBRINTs-Cat2]
gi|11061058|emb|CAC14444.1| penicillin beta-lactamase [Cloning vector pBRINTs-Gen4]
gi|11061067|emb|CAC14449.1| penicillin beta-lactamase [Cloning vector pBRINTs-Kan2]
gi|11120588|gb|AAG30933.1| beta lactamase [Cloning vector pCFB]
gi|11545511|gb|AAG37882.1| ampicillin resistance [Tn10 delivery vector pHV1248]
gi|11545517|gb|AAG37887.1| ampicillin resistance [Tn10 delivery vector pHV1249]
gi|12044260|gb|AAG47772.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|16505919|emb|CAD09800.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Typhi
str. CT18]
gi|16902303|dbj|BAB71951.1| beta-lactamase TEM-1 [Serratia marcescens]
gi|18140175|gb|AAL59006.1| beta-lactamase [Expression vector pFHC2102]
gi|21998668|emb|CAA38428.1| penicillinase TEM-1 [Pseudomonas aeruginosa]
gi|21998670|emb|CAA38430.1| penicillinase TEM-1 [Pseudomonas aeruginosa]
gi|25006370|dbj|BAC23912.1| beta-lactamase [Cloning vector pHSG415s]
gi|25006375|dbj|BAC23916.1| beta-lactamase [Cloning vector pHSG415r]
gi|27261357|gb|AAN87698.1| BlaTEM1 [Citrobacter freundii]
gi|27573261|gb|AAO20032.1| beta lactamase [Expression vector pETAT-11]
gi|27573264|gb|AAO20034.1| beta lactamase [Expression vector pETAT-12]
gi|27573267|gb|AAO20036.1| beta lactamase [Expression vector pNB-13]
gi|28971915|dbj|BAC65352.1| beta-lactamase [Cloning vector RCAS-L14]
gi|29568869|gb|AAO84025.1| beta-lactamase [Expression vector pPYPX88]
gi|29568882|gb|AAO84034.1| beta-lactamase [Expression vector pPYPX99]
gi|30230644|gb|AAP20891.1| beta-lactamase TEM-1 [Acinetobacter baumannii]
gi|30424542|gb|AAO24784.1| ampicillin resistance determinant [Shuttle vector pSK5630]
gi|30424547|gb|AAO24779.1| ampicillin resistance determinant [Shuttle vector pSK5645]
gi|30424558|gb|AAO24792.1| ampicillin resistance determinant [Shuttle vector pSK5640]
gi|31075617|gb|AAP42291.1| beta-lactamase [Cloning vector pHRS-9]
gi|31096324|gb|AAP43782.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|31339115|dbj|BAC77165.1| beta lactamase [Salmonella enterica subsp. enterica serovar
Enteritidis]
gi|33303462|gb|AAQ02307.1| beta-lactamase TEM-1 [Zymomonas mobilis subsp. mobilis CP4]
gi|34014594|dbj|BAC81970.1| beta-lactamase TEM-1 [Serratia marcescens]
gi|34398332|gb|AAQ67239.1| Bla [Transposon delivery vector pUT-miniTn5-gfp-tet]
gi|34495353|gb|AAQ73497.1| TEM-1 beta-lactamase [Enterobacter cloacae]
gi|37576798|gb|AAQ94057.1| beta-lactamase TEM-1 [Streptococcus pneumoniae]
gi|37674498|gb|AAQ96920.1| beta-lactamase TEM-1H [Klebsiella pneumoniae]
gi|37778075|gb|AAR02595.1| beta lactamase [Expression vector pKM260]
gi|37778077|gb|AAR02596.1| beta lactamase [Expression vector pKM263]
gi|37778079|gb|AAR02597.1| beta lactamase [Expression vector pKM263-1xHMK]
gi|37778081|gb|AAR02598.1| beta lactamase [Expression vector pKM263-2xHMK]
gi|37778083|gb|AAR02599.1| beta lactamase [Expression vector pKM264]
gi|37778085|gb|AAR02600.1| beta lactamase [Expression vector pKM265]
gi|37930012|gb|AAP74493.1| Bla [Cloning vector pLZ41]
gi|37962753|gb|AAR05700.1| beta-lactamase TEM1 [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|37962786|gb|AAR05733.1| beta-lactamase TEM1 [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|37983285|gb|AAR06285.1| beta-lactamase [Escherichia coli]
gi|38044079|dbj|BAD00176.1| beta-lactamase [Cloning vector pGETS109]
gi|38606069|gb|AAR25033.1| TEM-1 [Escherichia coli]
gi|40795478|gb|AAR91458.1| BlaTEM-1b beta-lactamase [Klebsiella pneumoniae]
gi|42557816|emb|CAD27777.1| ampicillin resistance protein [Cloning vector pTarg1]
gi|45386992|gb|AAS60101.1| ampicillin resistance protein [Cloning vector pSUP202]
gi|45558548|gb|AAS68104.1| beta-lactamase TEM-1 [Acinetobacter baumannii]
gi|48995598|gb|AAT48415.1| ampicillin resistance protein [Cloning vector pSRalphahygro]
gi|48995601|gb|AAT48417.1| ampicillin resistance protein [Cloning vector pSRalphaneo]
gi|48995604|gb|AAT48419.1| ampicillin resistance protein [Cloning vector pSRalphablast]
gi|48995607|gb|AAT48421.1| ampicillin resistance protein [Cloning vector pSRalphapuro]
gi|48995611|gb|AAT48424.1| ampicillin resistance protein [Cloning vector pSRalphablastC]
gi|48995615|gb|AAT48427.1| ampicillin resistance protein [Cloning vector pSRalphapuroG]
gi|48995619|gb|AAT48430.1| ampicillin resistance protein [Cloning vector pSRalphaneoR]
gi|48995623|gb|AAT48433.1| ampicillin resistance protein [Cloning vector pSRalphahygroY]
gi|49036569|gb|AAT48881.1| beta-lactamase [Integration vector pDG3661]
gi|51507314|emb|CAF29065.1| beta-lactamase TEM precursor [Haemophilus influenzae]
gi|51556863|gb|AAU06201.1| beta-lactamase [Shuttle cosmid vector pHZ1358]
gi|52699669|gb|AAU86938.1| beta-lactamase TEM-1 [Proteus mirabilis]
gi|55666552|dbj|BAD69593.1| TEM-1 beta-lactamase [Escherichia coli]
gi|57903225|gb|AAW58855.1| beta-lactamase [Escherichia coli]
gi|58200711|gb|AAW66605.1| beta-lactamase TEM-1b [Proteus mirabilis]
gi|58257619|dbj|BAD88773.1| TEM-1 beta lactamase [Shigella flexneri]
gi|62550829|emb|CAH64752.1| beta-lactamase [uncultured bacterium]
gi|63259113|gb|AAY40261.1| Amp [Cloning vector pHR307a]
gi|66270757|gb|AAY43692.1| Amp5 [Cloning vector pSJS1472]
gi|66932797|gb|AAY58236.1| beta-lactamase TEM-1b [Escherichia coli]
gi|69061783|gb|AAY99785.1| AmpR [Insertion vector pWSMK-T]
gi|71361201|dbj|BAE16359.1| TEM-1 beta-lactamase [Escherichia coli O157:H7]
gi|73476611|gb|AAZ76377.1| Bla [Cloning vector pSCR001]
gi|76786452|gb|ABA54979.1| TEM-1 [Pseudomonas putida]
gi|77455482|gb|ABA86550.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
gi|77455484|gb|ABA86551.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
gi|77455486|gb|ABA86552.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
gi|77455488|gb|ABA86553.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
gi|77455490|gb|ABA86554.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
gi|83286862|gb|ABC02197.1| beta-lactamase [Gene replacement vector pLAW344]
gi|84660251|emb|CAJ56071.1| beta-lactamase [Transconjugation vector pROCKB2]
gi|84660256|emb|CAJ56075.1| beta-lactamase [Transconjugation vector pROKB1]
gi|84782112|gb|ABC61527.1| Bla [YFV replicon vector capsid-def]
gi|84782114|gb|ABC61528.1| Bla [YFV replicon vector FMDV-2A-def]
gi|84782116|gb|ABC61529.1| Bla [YFV replicon vector prME-def]
gi|86278331|gb|ABC88416.1| ampicillin resistance marker [Delivery vector pDGIEF]
gi|91199927|emb|CAJ84437.1| beta-lactamase [Cloning vector pIV10]
gi|91983324|gb|ABE68729.1| Bla [Integrative promoter probe vector pPP1]
gi|91983330|gb|ABE68734.1| Bla [Integrative translation probe vector pTP1]
gi|92429687|gb|ABE77215.1| beta-lactamase [Tn7 delivery vector pGRG36]
gi|109627376|emb|CAJ84114.1| beta lactamase [Salmonella enterica subsp. enterica serovar
Infantis]
gi|110084078|gb|ABG49232.1| hypothetical protein [Escherichia coli]
gi|110348059|gb|ABG72753.1| Bla [Expression vector mce1]
gi|112785112|gb|ABI20746.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
gi|112785114|gb|ABI20747.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
gi|112785116|gb|ABI20748.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
gi|112785118|gb|ABI20749.1| TEM extended-spectrum beta-lactamase [Klebsiella pneumoniae]
gi|114107214|gb|ABI50223.1| beta lactamase TEM-1 [Klebsiella pneumoniae]
gi|115336278|gb|ABI94361.1| beta-lactamase [Cloning vector pGT2]
gi|115394180|gb|ABI97038.1| BlaTEM beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|116266308|gb|ABJ91392.1| beta lactamase [Cloning vector pGATA]
gi|117572166|gb|ABK40466.1| beta-lactamase [Cloning vector EXP4(+)]
gi|117572169|gb|ABK40468.1| beta-lactamase [Cloning vector EXP5(+)]
gi|117572172|gb|ABK40470.1| beta-lactamase [Cloning vector pDV-NYFP]
gi|117572175|gb|ABK40472.1| beta-lactamase [Cloning vector pDV-NTAP]
gi|117572178|gb|ABK40474.1| beta-lactamase [Cloning vector pDV-CGFP]
gi|117572181|gb|ABK40476.1| beta-lactamase [Cloning vector pDV-CYFP]
gi|117572184|gb|ABK40478.1| beta-lactamase [Cloning vector pDV-CTAP]
gi|117572187|gb|ABK40480.1| beta-lactamase [Cloning vector pDV-NTAP-NYFP]
gi|117572190|gb|ABK40482.1| beta-lactamase [Cloning vector pDV-NYFP-CTAP]
gi|117572193|gb|ABK40484.1| beta-lactamase [Cloning vector pDV-CGFP-CTAP]
gi|117572196|gb|ABK40486.1| beta-lactamase [Cloning vector pDV-CYFP-CTAP]
gi|117572199|gb|ABK40488.1| beta-lactamase [Cloning vector pDV-NTAP-CGFP]
gi|117572202|gb|ABK40490.1| beta-lactamase [Cloning vector pDV-NTAP-CYFP]
gi|117979211|gb|ABK59950.1| Bla [Integrative promoter probe vector pPP2]
gi|117979217|gb|ABK59955.1| Bla [Integrative promoter probe vector pTP2]
gi|118123363|dbj|BAF36945.1| TEM-1 beta-lactamase [Escherichia coli]
gi|118135667|gb|ABK62680.1| beta-lactamase [ORF expression vector pSOX]
gi|118135670|gb|ABK62682.1| beta-lactamase [ORF selection and expression vector pSOS-X]
gi|118603543|gb|ABL09148.1| beta-lactamase TEM-1 [Shigella flexneri]
gi|124053925|gb|ABM89169.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053927|gb|ABM89170.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053929|gb|ABM89171.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053931|gb|ABM89172.1| TEM beta lactamase [Klebsiella oxytoca]
gi|124053933|gb|ABM89173.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053935|gb|ABM89174.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053937|gb|ABM89175.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053939|gb|ABM89176.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053941|gb|ABM89177.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053943|gb|ABM89178.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053945|gb|ABM89179.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053947|gb|ABM89180.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053949|gb|ABM89181.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053951|gb|ABM89182.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|124053953|gb|ABM89183.1| TEM beta lactamase [Escherichia coli]
gi|124053955|gb|ABM89184.1| TEM beta lactamase [Escherichia coli]
gi|124053957|gb|ABM89185.1| TEM beta lactamase [Escherichia coli]
gi|124053959|gb|ABM89186.1| TEM beta lactamase [Escherichia coli]
gi|124053961|gb|ABM89187.1| TEM beta lactamase [Escherichia coli]
gi|124053963|gb|ABM89188.1| TEM beta lactamase [Escherichia coli]
gi|124053965|gb|ABM89189.1| TEM beta lactamase [Escherichia coli]
gi|124053967|gb|ABM89190.1| TEM beta lactamase [Escherichia coli]
gi|124053969|gb|ABM89191.1| TEM beta lactamase [Escherichia coli]
gi|124053971|gb|ABM89192.1| TEM beta lactamase [Acinetobacter sp. AC35]
gi|124053973|gb|ABM89193.1| TEM beta lactamase [Acinetobacter sp. AC18]
gi|124053975|gb|ABM89194.1| TEM beta lactamase [Acinetobacter sp. AC28]
gi|124053977|gb|ABM89195.1| TEM beta lactamase [Acinetobacter sp. AC17]
gi|124053979|gb|ABM89196.1| TEM beta lactamase [Acinetobacter sp. AC78]
gi|124053981|gb|ABM89197.1| TEM beta lactamase [Acinetobacter sp. AC25]
gi|124053983|gb|ABM89198.1| TEM beta lactamase [Acinetobacter sp. AC149]
gi|124053985|gb|ABM89199.1| TEM beta lactamase [Acinetobacter sp. AC23]
gi|124053987|gb|ABM89200.1| TEM beta lactamase [Proteus sp. PR425]
gi|124053989|gb|ABM89201.1| TEM beta lactamase [Citrobacter sp. CI925]
gi|124053991|gb|ABM89202.1| TEM beta lactamase [Citrobacter sp. CI920]
gi|124053993|gb|ABM89203.1| TEM beta lactamase [Citrobacter sp. CI888]
gi|124053995|gb|ABM89204.1| TEM beta lactamase [Citrobacter sp. CI174]
gi|124053997|gb|ABM89205.1| TEM beta lactamase [Citrobacter sp. CI157]
gi|124053999|gb|ABM89206.1| TEM beta lactamase [Enterobacter sp. EN723]
gi|124054001|gb|ABM89207.1| TEM beta lactamase [Enterobacter sp. EN959]
gi|124054003|gb|ABM89208.1| TEM beta lactamase [Enterobacter sp. EN690]
gi|124054005|gb|ABM89209.1| TEM beta lactamase [Enterobacter sp. EN843]
gi|124054007|gb|ABM89210.1| TEM beta lactamase [Enterobacter sp. EN893]
gi|124054009|gb|ABM89211.1| TEM beta lactamase [Enterobacter sp. EN989]
gi|124054011|gb|ABM89212.1| TEM beta lactamase [Enterobacter sp. EN263]
gi|124054013|gb|ABM89213.1| TEM beta lactamase [Enterobacter sp. EN702]
gi|124054015|gb|ABM89214.1| TEM beta lactamase [Enterobacter sp. EN719]
gi|124054017|gb|ABM89215.1| TEM beta lactamase [Enterobacter sp. EN712]
gi|124054019|gb|ABM89216.1| TEM beta lactamase [Enterobacter sp. EN232]
gi|124054021|gb|ABM89217.1| TEM beta lactamase [Enterobacter sp. EN265]
gi|124054023|gb|ABM89218.1| TEM beta lactamase [Enterobacter sp. EN222]
gi|124054025|gb|ABM89219.1| TEM beta lactamase [Enterobacter sp. EN729]
gi|124054027|gb|ABM89220.1| TEM beta lactamase [Enterobacter sp. EN219]
gi|124054029|gb|ABM89221.1| TEM beta lactamase [Enterobacter sp. EN715]
gi|124054031|gb|ABM89222.1| TEM beta lactamase [Escherichia coli]
gi|124054033|gb|ABM89223.1| TEM beta lactamase [Escherichia coli]
gi|125743015|gb|ABN54712.1| TEM-1b beta-lactamase [Escherichia coli]
gi|129278841|gb|ABO28847.1| beta-lactamase [Cloning vector pD-GEX1]
gi|134105576|gb|ABO60928.1| beta-lactamase [Expression vector p15TV-L]
gi|134105584|gb|ABO60934.1| beta-lactamase [Expression vector pET15-MHL]
gi|145271355|gb|EDK11268.1| beta-lactamase [Haemophilus influenzae PittII]
gi|145307015|gb|ABP57195.1| beta-lactamase [Expression vector pCW-LIC]
gi|145848974|emb|CAM91526.1| tem-1 (tem extended-spectrum beta-lactamase) [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|147724723|gb|ABQ45973.1| beta lactamase [Expression vector pEamTA]
gi|148524820|dbj|BAF63418.1| beta-lactamase [Escherichia coli]
gi|150958413|gb|ABR80441.1| beta-lactamase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
gi|150958611|gb|ABR80638.1| putative TEM-1 beta-lactamase [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|156617159|gb|ABU87507.1| beta-lactamase TEM precursor [Haemophilus influenzae 86-028NP]
gi|157841130|gb|ABV83132.1| beta-lactamase [Cloning vector pGT3]
gi|158348095|gb|ABW37352.1| ampicillin resistance [Cloning vector pEZY202]
gi|159032442|gb|ABW87618.1| beta-lactamase TEM-1 [Escherichia coli]
gi|159885370|dbj|BAF92974.1| beta-lactamase TEM precursor [Salmonella enterica subsp. enterica
serovar Choleraesuis]
gi|159885490|dbj|BAF93093.1| beta-lactamase TEM precursor [Salmonella enterica subsp. enterica
serovar Dublin]
gi|161087318|gb|ABX56788.1| Bla [Salmonella enterica subsp. enterica serovar Choleraesuis]
gi|162423736|gb|ABX89601.1| AmpR [Cloning vector pFOSAMP]
gi|164511932|emb|CAO98722.1| TEM-1 B-lactamase [Haemophilus parainfluenzae]
gi|167613951|gb|ABZ89574.1| beta-lactamase TEM precursor [Escherichia coli]
gi|167966282|gb|ACA13193.1| beta-lactamase [Psychrobacter maritimus]
gi|167966284|gb|ACA13194.1| beta-lactamase [Psychrobacter pulmonis]
gi|169656090|gb|ACA62821.1| beta-lactamase TEM-1 [Escherichia coli]
gi|170522114|gb|ACB20291.1| beta-lactamase TEM [Escherichia coli SMS-3-5]
gi|171850734|gb|ACB55473.1| TEM-1 [Klebsiella pneumoniae]
gi|172051453|emb|CAP07795.1| BlaTEM-1 [Escherichia coli]
gi|183229405|gb|ACC60255.1| beta-lactamase TEM-1 [Haemophilus influenzae]
gi|186703055|gb|ACC91766.1| ampicillin resistance protein [Cloning vector pWSTK6]
gi|186928931|emb|CAQ48345.1| beta-lactamase [Providencia rettgeri]
gi|192822659|gb|ACF06168.1| beta-lactamase TEM-1b [Klebsiella pneumoniae]
gi|194409324|gb|ACF69543.1| beta-lactamase TEM [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194709286|gb|ACF88509.1| beta-lactamase TEM [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195954368|gb|ACG58891.1| extended spectrum beta lactamase TEM-1 [Escherichia coli]
gi|195954370|gb|ACG58892.1| extended spectrum beta lactamase TEM-1 [Klebsiella pneumoniae]
gi|195954372|gb|ACG58893.1| extended spectrum beta lactamase TEM-1 [Enterobacter sp. O050230]
gi|195972452|gb|ACG61355.1| beta-lactamase class A [Expression vector pDGICZ]
gi|198286397|gb|ACH85856.1| TEM-1 [Salmonella enterica subsp. enterica serovar Kentucky]
gi|198448569|gb|ACH88505.1| beta-lactamase TEM-1 [Helicobacter pylori]
gi|199600431|emb|CAR66073.1| beta-lactamase [Cloning vector pr8a]
gi|206601285|gb|ACI16364.1| beta-lactamase [Enterobacter aerogenes]
gi|208969612|gb|ACI32075.1| beta-lactamase [Escherichia coli]
gi|209574135|gb|ACI63023.1| beta-lactamase [Klebsiella pneumoniae]
gi|213054807|gb|ACJ39709.1| beta-lactamase TEM [Acinetobacter baumannii AB0057]
gi|213133674|gb|ACJ43236.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133676|gb|ACJ43237.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133678|gb|ACJ43238.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133680|gb|ACJ43239.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133682|gb|ACJ43240.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133684|gb|ACJ43241.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133686|gb|ACJ43242.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133688|gb|ACJ43243.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133690|gb|ACJ43244.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133692|gb|ACJ43245.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133694|gb|ACJ43246.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133696|gb|ACJ43247.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133698|gb|ACJ43248.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133700|gb|ACJ43249.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133702|gb|ACJ43250.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133704|gb|ACJ43251.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133706|gb|ACJ43252.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133708|gb|ACJ43253.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133720|gb|ACJ43259.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213133722|gb|ACJ43260.1| TEM-1 beta-lactamase [Escherichia coli]
gi|213493243|gb|ACJ47798.1| TEM-1 [Klebsiella pneumoniae]
gi|215397974|gb|ACJ65251.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|217427695|gb|ACK44542.1| BlaTEM-1b beta lactamase [Salmonella enterica subsp. enterica
serovar Kentucky]
gi|218350185|emb|CAQ86948.1| Beta-lactamase TEM precursor (Penicillinase) [Escherichia
fergusonii]
gi|218356536|emb|CAQ89159.1| Beta-lactamase TEM precursor (penicillinase) [Escherichia
fergusonii ATCC 35469]
gi|218434997|emb|CAR15942.1| Beta-lactamase TEM precursor (penicillinase) [Escherichia coli
UMN026]
gi|218744617|dbj|BAH03496.1| beta-lactamase [Cloning vector pKS145]
gi|219563188|gb|ACL27954.1| beta-lactamase TEM-1 [Escherichia coli]
gi|220898278|gb|ACL81499.1| beta-lactamase TEM-1 [Escherichia coli]
gi|220898283|gb|ACL81503.1| beta-lactamase [Escherichia coli]
gi|220901861|gb|ACL82963.1| TEM beta lactamase [Klebsiella pneumoniae]
gi|224579163|gb|ACN58168.1| TEM-1 beta-lactamase [Escherichia coli]
gi|224979338|gb|ACN72590.1| beta-lactamase TEM-1 [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|225697597|gb|ACO07071.1| beta-lactamase [Klebsiella pneumoniae]
gi|225697599|gb|ACO07072.1| beta-lactamase [Klebsiella pneumoniae]
gi|225697601|gb|ACO07073.1| beta-lactamase [Klebsiella pneumoniae]
gi|226425902|gb|ACO53995.1| beta-lactamase TEM-1 [Enterobacter cloacae]
gi|226426213|gb|ACO54305.1| beta-lactamase TEM-1 [Enterobacter cloacae]
gi|227430094|emb|CAX51342.1| TEM-1 [Salmonella enterica subsp. enterica]
gi|228480580|gb|ACQ41908.1| beta-lactamase TEM-1 precursor [Escherichia coli]
gi|228480798|gb|ACQ42124.1| beta-lactamase TEM-1 precursor [Escherichia coli]
gi|229810136|gb|EEP45856.1| beta-lactamase TEM precursor [Haemophilus influenzae 7P49H1]
gi|237871520|gb|ACR26205.1| Amp [Delivery vector PDGREF]
gi|241732795|gb|ACS68182.1| beta-lactamase [Expression vector pBJS001]
gi|254595912|gb|ACT75271.1| beta-lactamase TEM-1 [Acinetobacter baumannii]
gi|254674505|dbj|BAH86060.1| beta-lactamase [Cloning vector pYT923hyg]
gi|254966768|gb|ACT97385.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF1DD01_01]
gi|254966775|gb|ACT97390.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF1DD01_04]
gi|254966791|gb|ACT97401.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_07]
gi|254966794|gb|ACT97403.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_08]
gi|254966798|gb|ACT97405.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_10]
gi|254966806|gb|ACT97410.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_13]
gi|254966816|gb|ACT97417.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_16]
gi|254966829|gb|ACT97426.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_22]
gi|254966852|gb|ACT97441.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_47]
gi|254966856|gb|ACT97444.1| TEM-1b beta-lactamase [mixed culture bacterium AX_gF3SD01_48]
gi|254966895|gb|ACT97469.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF1DD01_02]
gi|254966899|gb|ACT97471.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF1DD01_07]
gi|254966901|gb|ACT97472.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF1DD01_13]
gi|254966911|gb|ACT97478.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF2-3DD01_02]
gi|254966934|gb|ACT97493.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF3SD01_17]
gi|254966937|gb|ACT97495.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF3SD01_18]
gi|254966939|gb|ACT97496.1| TEM-1b beta-lactamase [mixed culture bacterium CA_gF3SD01_20]
gi|254967177|gb|ACT97639.1| TEM-1b beta-lactamase [mixed culture bacterium PE_gF2-3DD01_03]
gi|254967179|gb|ACT97640.1| TEM-1b beta-lactamase [mixed culture bacterium PE_gF3SD01_02]
gi|254967190|gb|ACT97647.1| TEM-1b beta-lactamase [mixed culture bacterium PE_gF3SD01_08]
gi|254967209|gb|ACT97659.1| TEM-1b beta-lactamase [mixed culture bacterium PI_gF3SD01_05]
gi|254967218|gb|ACT97665.1| TEM-1b beta-lactamase [mixed culture bacterium PI_gF3SD01_19]
gi|254967220|gb|ACT97666.1| TEM-1b beta-lactamase [mixed culture bacterium PI_gF3SD01_20]
gi|254967222|gb|ACT97667.1| TEM-1b beta-lactamase [mixed culture bacterium PI_gF3SD01_21]
gi|255928724|gb|ACU42196.1| AmpR [Insertion vector pUTTnsKm]
gi|255928729|gb|ACU42200.1| AmpR [Insertion vector pUTTnsCm]
gi|255928734|gb|ACU42204.1| AmpR [Insertion vector pUTTnsTet]
gi|256274856|gb|ACU68557.1| beta-lacatamase TEM-1 [Enterobacter cloacae]
gi|256532072|gb|ACU81180.1| beta-lactamase [Escherichia coli]
gi|257359587|gb|ACV53161.1| beta lactamase [Expression Vector pETBA]
gi|257767603|dbj|BAI39097.1| TEM-1 beta-lactamase [Escherichia coli O111:H- str. 11128]
gi|261857315|emb|CBA11387.1| beta-lactamase tem precursor (ec 3.5.2.6) (tem-1) (tem-2) (tem-3)
(tem-4) (tem-5) (tem-6) (tem-8/caz-2) (tem-16/caz-7)
(tem-24/caz-6) (irt-4) (penicillinase) [Salmonella
enterica subsp. enterica serovar Typhimurium]
gi|283445080|gb|ADB20424.1| beta-lactamase blaTEM1 [Escherichia coli O26:H-]
gi|283484059|gb|ADB23349.1| TEM-1, beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|284433182|gb|ADB84921.1| TEM-1 beta-lactamase [Escherichia coli]
gi|284433237|gb|ADB84976.1| TEM-1 beta-lactamase [Escherichia coli]
gi|284822044|gb|ADB98019.1| Bla [Donor vector pTKIP-neo]
gi|284822048|gb|ADB98022.1| Bla [Donor vector pTKIP-cat]
gi|284822052|gb|ADB98025.1| Bla [Donor vector pTKIP-hygro]
gi|284822056|gb|ADB98028.1| Bla [Donor vector pTKIP-tri]
gi|285016601|gb|ADC33150.1| ampicillin resistance protein [Escherichia coli]
gi|290792156|gb|ADD63482.1| beta-lactamase [Klebsiella pneumoniae]
gi|290964839|emb|CBH41107.1| TEM-1b [Kluyvera georgiana]
gi|293339416|gb|ADE43970.1| TEM betalactamase [Klebsiella pneumoniae]
gi|297185518|gb|ADI24150.1| beta-lactamase TEM-1 [Acinetobacter baumannii]
gi|298501372|gb|ADI82846.1| beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|298501374|gb|ADI82847.1| beta-lactamase TEM-1 [Enterobacter cloacae]
gi|300309062|gb|EFJ63582.1| beta-lactamase [Escherichia coli MS 200-1]
gi|300315908|gb|EFJ65692.1| beta-lactamase [Escherichia coli MS 175-1]
gi|300403173|gb|EFJ86711.1| beta-lactamase [Escherichia coli MS 84-1]
gi|300419164|gb|EFK02475.1| beta-lactamase [Escherichia coli MS 182-1]
gi|300453627|gb|EFK17247.1| beta-lactamase [Escherichia coli MS 116-1]
gi|300455628|gb|EFK19121.1| beta-lactamase [Escherichia coli MS 21-1]
gi|300510896|gb|ADK25063.1| OKP beta-lactamase [Serratia marcescens]
gi|300528854|gb|EFK49916.1| beta-lactamase [Escherichia coli MS 107-1]
gi|300810987|gb|ADK35768.1| BlaTEM1b beta-lactamase [Klebsiella pneumoniae]
gi|300837412|gb|EFK65172.1| beta-lactamase [Escherichia coli MS 124-1]
gi|300844064|gb|EFK71824.1| beta-lactamase [Escherichia coli MS 78-1]
gi|301168718|emb|CBW28309.1| beta-lactamase tem precursor (ec 3.5.2.6) (penicillinase)
[Haemophilus influenzae 10810]
gi|302029399|gb|ADK91430.1| TEM-1 beta-lactamase [Neisseria gonorrhoeae]
gi|302127789|emb|CBO78202.1| beta-lactamase TEM-1 [Salmonella enterica subsp. enterica serovar
Enteritidis]
gi|302310091|gb|ADL13963.1| TEM-1 [Escherichia coli]
gi|302310193|gb|ADL14064.1| TEM-1 [Escherichia coli]
gi|302487918|gb|ADL40232.1| TEM-1 beta-lactamase [Escherichia coli]
gi|302487926|gb|ADL40237.1| TEM-1 [Escherichia coli]
gi|304376163|dbj|BAJ15325.1| beta-lactamase tem precursor [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|306491151|gb|ADM95145.1| ampicillin resistance determinant [Cloning vector pGFPamy]
gi|306491159|gb|ADM95151.1| ampicillin resistance determinant [Cloning vector pYFPamy]
gi|306491167|gb|ADM95157.1| ampicillin resistance determinant [Cloning vector pCFPamy]
gi|308826743|emb|CBX35997.1| Beta-lactamase TEM-1 [Escherichia coli]
gi|309750554|gb|ADO80538.1| beta-lactamase [Haemophilus influenzae R2866]
gi|309774078|gb|ADO95144.1| beta lactamase [Expression vector pPICK9KH1N1HA]
gi|310686587|gb|ADP02961.1| Bla [Cloning vector pLR3]
gi|312179387|gb|ADQ39589.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Wien]
gi|312191347|gb|ADQ43721.1| BLA [Expression vector pIGALBSTP]
gi|313574897|emb|CBY43986.1| beta-lactamase [Cloning vector pTUY1H]
gi|313652089|gb|ADR71675.1| AmpR [Retroviral Tet-shRNA expression vector TRMPV-Hygro]
gi|313652094|gb|ADR71679.1| AmpR [Retroviral Tet-shRNA expression vector TRMPV-Neo]
gi|313652098|gb|ADR71682.1| AmpR [Retroviral Tet-shRNA expression vector TRMPV-ns]
gi|313652103|gb|ADR71686.1| AmpR [Retroviral Tet-shRNA expression vector TRMPVIR]
gi|313652108|gb|ADR71690.1| AmpR [Retroviral Tet-shRNA expression vector TtRMPVIR]
gi|313652113|gb|ADR71694.1| AmpR [Retroviral Tet-shRNA expression vector TtTMPV-Neo]
gi|315252274|gb|EFU32242.1| beta-lactamase [Escherichia coli MS 85-1]
gi|315617947|gb|EFU98542.1| beta-lactamase family protein [Escherichia coli 3431]
gi|322366624|gb|ADW95392.1| beta-lactamase TEM-1B [Salmonella enterica subsp. enterica serovar
Rissen]
gi|323388294|gb|ADX60443.1| TEM beta-lactamase [Klebsiella pneumoniae]
gi|323516301|gb|ADX90682.1| beta-lactamase TEM [Acinetobacter baumannii TCDC-AB0715]
gi|323700881|gb|ADY00034.1| class A beta lactamase TEM-1 [Escherichia coli]
gi|323709054|gb|ADY02540.1| TEM-1 [Escherichia coli]
gi|323709058|gb|ADY02543.1| TEM-1 [Escherichia coli]
gi|323903312|gb|ADY11076.1| TEM-1 beta-lactamase [Escherichia coli]
gi|323958858|gb|EGB54536.1| beta-lactamase [Escherichia coli H489]
gi|324009181|gb|EGB78400.1| beta-lactamase [Escherichia coli MS 57-2]
gi|324021202|gb|EGB90421.1| beta-lactamase [Escherichia coli MS 117-3]
gi|324110968|gb|EGC04958.1| beta-lactamase [Escherichia fergusonii B253]
gi|324976978|gb|ADY68343.1| beta-lactamase [Cloning vector pBAM1]
gi|324976983|gb|ADY68347.1| beta-lactamase [Cloning vector pBAM1-GFP]
gi|327536715|gb|AEA95547.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Dublin]
gi|330907835|gb|EGH36360.1| beta-lactamase [Escherichia coli AA86]
gi|331081817|gb|EGI52975.1| beta-lactamase [Escherichia coli H299]
gi|331687728|gb|AED88265.1| AmpR [Expression vector XN21_GW]
gi|332015345|gb|AED99557.1| beta-lactamase [Enterobacter sp. W001]
gi|332144556|dbj|BAK19774.1| TEM-type beta-lactamase [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|332144558|dbj|BAK19775.1| TEM-type beta-lactamase [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|332736730|gb|EGJ67720.1| beta-lactamase [Acinetobacter baumannii 6014059]
gi|1089993|prf||2018199A beta lactamase IRT-4
Length = 286
Score = 56.1 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|298492563|ref|YP_003722740.1| beta-lactamase ['Nostoc azollae' 0708]
gi|298234481|gb|ADI65617.1| beta-lactamase ['Nostoc azollae' 0708]
Length = 508
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 46/276 (16%), Positives = 92/276 (33%), Gaps = 15/276 (5%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ L+ L+ N +P ++D +TG + + + AS K+ F +
Sbjct: 186 IIPLTTTVQNLARPYPNLIPGVFMVDLDTGA-YVDINSNASFPAASTIKIPILITFFQDV 244
Query: 70 KEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
K L +T+ K S T GS T + +I S N + L
Sbjct: 245 DAGKIRLDEMLTLQKEMISEGSGSLRTQAVGSQYTALDIATKMITISDNTATNMLVTRL- 303
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF 188
+ +N ++ GL+ T N +Q + + R++ L ++ M
Sbjct: 304 ----GGQEVLNERFRSWGLATTMIRNPLPDLQGTNTISPRELGDLIAKVNQGNLVSMRSR 359
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
+ ++ + N G GA KTG + + I + IA ++ +
Sbjct: 360 DLMLDIMRRTERDNL-LPSGLGQGARAYHKTGDIGSMLGDAGLIDIPTGKRYIAAVM--V 416
Query: 248 DRNTRNKVSASLL----SMGFYNKTDRKKINYIIKD 279
R + + L+ S + + + +
Sbjct: 417 QRPNNDPSAEKLISSISSAAYQHFSQTTVTPRTPTN 452
>gi|110350794|emb|CAL08007.1| TEM-137 beta-lactamase [Shigella sonnei]
Length = 286
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGRRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|14700044|gb|AAK71474.1| TEM-89 beta-lactamase [Proteus mirabilis]
Length = 278
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 80/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMGDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
+ + I VI G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEI 278
>gi|84570489|dbj|BAE72674.1| ampicillin resistant protein [Cloning vector pSU0]
gi|154936855|dbj|BAF75372.1| ampicillin resistant protein [Cloning vector pSU22]
gi|322392876|gb|ADW95860.1| beta-lactamase [Gene deletion vector pJL2]
Length = 286
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 40/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ + S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCDTLLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDESDTTMPVAMP 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKRSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|221047950|gb|ACL98082.1| Amp [Expression vector pHsh-amp]
gi|224611742|gb|ACN60073.1| Amp [Expression Vector pHsh-ex]
Length = 286
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 38/270 (14%), Positives = 73/270 (27%), Gaps = 13/270 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQSLIAVILGALDRNTRNKVSASLL 260
+ + V++ L+
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRLI 275
>gi|110610033|gb|ABG77582.1| extended spectrum beta-lactamase [Proteus mirabilis]
Length = 286
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|301017556|ref|ZP_07182232.1| beta-lactamase [Escherichia coli MS 69-1]
gi|3851588|gb|AAC72362.1| extended-spectrum beta-lactamase TEM-10 [Morganella morganii]
gi|300400144|gb|EFJ83682.1| beta-lactamase [Escherichia coli MS 69-1]
Length = 286
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|75428812|sp|Q48406|BLAT_KLEOX RecName: Full=Beta-lactamase TEM-12; Flags: Precursor
gi|149169|gb|AAA25053.1| TEM-26B beta-lactamase [Klebsiella oxytoca]
Length = 286
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|229594902|ref|XP_001021203.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila]
gi|225566509|gb|EAS00958.2| D-alanyl-D-alanine carboxypeptidase family protein [Tetrahymena
thermophila SB210]
Length = 528
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 64/169 (37%), Gaps = 17/169 (10%)
Query: 125 ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT----- 179
+ + ++ F++ MN + L T F N HG+ + + D+A L+++
Sbjct: 360 QYVSDYQRYFLKEMNKIAMQFLLRCTQFSNPHGLANKLNKSNCNDLAKLTYKAMKWRLFR 419
Query: 180 ------DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + ++ N G G+KTG T ++G + +
Sbjct: 420 KIVQTKTYLSKYKIINDQTQDVTYGTNFWKNTNKLLDQGYLGVKTGITTSAGSCLSSFYS 479
Query: 234 ------QGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYI 276
Q + S+I ++LG + R + S++ +++K N I
Sbjct: 480 NYVPSLQKNISVIVIVLGGYKSDDRFDDTQSIIDWYIKTLEEQQKSNKI 528
Score = 37.3 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 13/115 (11%), Positives = 28/115 (24%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
AS+TK+MT V K+ ++ +
Sbjct: 186 NTYEIREMASITKIMTCLVSLKLAKKFDINVSEIYFSVSKTAVMNQLIFNSTIIYGKIXX 245
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
I I ++ + + K+ + + +N +G
Sbjct: 246 QKYPYGIDFLFYHIYYFLSLNYIQILKQVAFQLITKCFQFDFYLINQININGTTA 300
>gi|112785108|gb|ABI20744.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
Length = 286
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + M + I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMAVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|22725667|gb|AAN04881.1| beta-lactamase TEM-115 [Klebsiella pneumoniae]
Length = 286
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|302487937|gb|ADL40245.1| TEM-1 beta-lactamase [Pseudomonas aeruginosa]
gi|312949078|gb|ADR29904.1| beta-lactamase [Escherichia coli O83:H1 str. NRG 857C]
Length = 286
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFSAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|45268493|gb|AAS55868.1| extended-spectrum beta-lactamase [Pseudomonas aeruginosa]
Length = 274
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 75/265 (28%), Gaps = 14/265 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGEHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNK 254
+ + I VI + T ++
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDE 270
>gi|303304754|emb|CBJ06718.1| extended-spectrum beta-lactamase [Proteus mirabilis]
Length = 286
Score = 55.8 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 43/277 (15%), Positives = 83/277 (29%), Gaps = 14/277 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDH 49
++ F V + + P + ET Y LD N+G ++ P+
Sbjct: 3 IKHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEE 62
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V S + + L I S+N + MT+
Sbjct: 63 RFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCS 122
Query: 110 LLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + ++ ++ F+ +M + L A + T A
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTTPA 182
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
L + + Q+ K + K+G
Sbjct: 183 AMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGTGKRGSRG 242
Query: 228 IVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
I+A+ + I VI + T ++ + + +G
Sbjct: 243 IIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|25900617|emb|CAD24670.1| beta-lactamase [Escherichia coli]
Length = 286
Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSSGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|15149326|gb|AAK85243.1| inhibitor resistant TEM beta-lactamase [Escherichia coli]
gi|15149332|gb|AAK85246.1| inhibitor resistant TEM beta-lactamase [Escherichia coli]
gi|15149342|gb|AAK85251.1| inhibitor resistant TEM beta-lactamase [Escherichia coli]
Length = 286
Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSSGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|2648043|emb|CAA65888.1| beta-lactamase [Serratia marcescens]
Length = 285
Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/275 (14%), Positives = 81/275 (29%), Gaps = 17/275 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN-----------KLPYYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGSTSGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ +++ F+ +M + L + TT
Sbjct: 126 TMSDNTAANLLLTTIGGSQELTAFLHNMGDHVTRLDRWEPELNE--AIPNDEADTTMPAA 183
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIV 229
+ R + + ++ K K+G I+
Sbjct: 184 MATTLRKLLTGELLTLASRQQLIDWMADKVAGPLLRSALPAGWFIADKSGARERGSRGII 243
Query: 230 ASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
A+ + I VI + T ++ + + +G
Sbjct: 244 AALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 278
>gi|20198333|gb|AAM15527.1|AF347054_1 inhibitor-resistant beta-lactamase TEM-80 [Enterobacter cloacae]
Length = 286
Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/273 (15%), Positives = 80/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ +
Sbjct: 66 MLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAV 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
+ + I VI G+ + R++ A +
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERDRQIAEI 278
>gi|15485219|emb|CAC67290.1| beta lactamase TEM-95 [Escherichia coli]
Length = 286
Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGAKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|207849087|gb|ACI25375.1| beta-lactamase TEM-166 [Escherichia coli]
Length = 286
Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVGELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|145975407|gb|ABQ00181.1| CMT-type beta lactamase [Escherichia coli]
Length = 286
Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 80/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
+ + I VI G+ + R++ A +
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERDRQIAEI 278
>gi|6176542|gb|AAF05611.1|AF190692_1 inhibitor-resistant beta-lactamase TEM-79 [Escherichia coli]
Length = 286
Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSGGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|4732115|gb|AAD28611.1| beta-lactamase [Cloning vector pWD42-09]
gi|4928116|gb|AAD33413.1| beta-lactmase [Cloning vector pWDYcos1.0.1]
Length = 286
Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDPGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|38234569|ref|NP_940336.1| putative D-Ala D-Ala carboxypeptidase [Corynebacterium diphtheriae
NCTC 13129]
gi|38200832|emb|CAE50536.1| Putative D-Ala D-Ala carboxypeptidase [Corynebacterium diphtheriae]
Length = 426
Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
L+ ++D TG VI E D P PAS TK++TA L +
Sbjct: 78 ALAQDPRLAGFAGKIVDATTGEVILEKDADKPLTPASATKMLTATAALYELGPEH 132
>gi|2589218|gb|AAB83984.1| beta lactamase [Cloning vector pTM30]
Length = 286
Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPPAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|454853|gb|AAA99042.1| beta-lactamase [unidentified cloning vector]
gi|454856|gb|AAA99040.1| beta-lactamase [unidentified cloning vector]
Length = 286
Score = 55.8 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/276 (14%), Positives = 79/276 (28%), Gaps = 18/276 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L + TT
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNE--AIPNDERDTTMLYA 183
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGFTCASGFNI 228
+ R + + ++ K+G I
Sbjct: 184 MATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGI 243
Query: 229 VASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+A+ + I VI + T ++ + + +G
Sbjct: 244 IAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|288551658|gb|ACZ02437.2| extended spectrum beta-lactamase TEM-1 [Providencia rettgeri]
Length = 278
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/273 (16%), Positives = 80/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
+ + I VI G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEI 278
>gi|110835657|emb|CAL26907.1| beta-lactamase protein [Acetobacter pasteurianus]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/273 (16%), Positives = 80/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
+ + I VI G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEI 278
>gi|297563881|ref|YP_003682854.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296848330|gb|ADH70348.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 455
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
++D TG + E PD P PAS TK+ TA V
Sbjct: 82 SGFVVDAATGETLFELDPDAPVTPASTTKIATAVAVLDA 120
>gi|257059487|ref|YP_003137375.1| beta-lactamase [Cyanothece sp. PCC 8802]
gi|256589653|gb|ACV00540.1| beta-lactamase [Cyanothece sp. PCC 8802]
Length = 425
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/228 (14%), Positives = 66/228 (28%), Gaps = 6/228 (2%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
S K + +D + G P AS K+ F L K L
Sbjct: 154 IATQSKYAKLKPQAWF-MDLDNGA-YVSVNGSVPVPAASTIKIPVLVAFFEALDAGKIHL 211
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+T+ K N +K T ++ +++ A + +
Sbjct: 212 DEILTMDKAIITSGAGNMQYKPPGTKFTALETATQMIVISDNTATDML----IRRLGGKE 267
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
+N ++ G++ T N ++ + TT D++ L RI+ + ++
Sbjct: 268 ALNARFRDWGMTNTVINNRLPDLEGTNTTTPEDLSKLLARIERGEVLTLRSRDRLLGIMQ 327
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ KTG + + I + I +
Sbjct: 328 ETRTRTLLPQGLEKDAIISHKTGDIGSIIGDAGIIDIPNGKRYIGAVF 375
>gi|4557168|gb|AAD22539.1|AF104442_1 inhibitor resistant beta lactamase TEM-54 [Escherichia coli]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSLGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|74054894|gb|AAZ95768.1| putative TEM beta lactamase [bacterium RRLBTPL III-2]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/276 (14%), Positives = 79/276 (28%), Gaps = 14/276 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMGFY 265
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGLS 281
>gi|296954|emb|CAA46345.1| extended spectrum beta-lactamase CAZ-6 [Klebsiella pneumoniae]
gi|289065301|gb|ADC80803.1| extended spectrum beta-lactamase TEM-24 [Escherichia coli]
gi|289065321|gb|ADC80822.1| extended spectrum beta-lactamase TEM-24 [Escherichia coli]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGTGKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|1836181|gb|AAB46928.1| penicillin-binding protein, PBP=49 kda essential membrane-bound
cell-wall synthesizing enzyme {N-terminal}
[Mycobacterium smegmatis, Peptide Partial, 39 aa]
Length = 39
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
L+D TG ++ + D AS+TK+
Sbjct: 5 NINADAAILVDAETGKILYQKNADKVLGIASMTKM 39
>gi|76799931|ref|ZP_00781932.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
agalactiae 18RS21]
gi|76584715|gb|EAO61472.1| D-alanyl-D-alanine carboxypeptidase family protein [Streptococcus
agalactiae 18RS21]
Length = 188
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 9/130 (6%)
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA----LDRNTRNKVSASLLSMGFYN 266
G G+KTG T +G + +A++ + L+ VI+ A D+ R + SLL+
Sbjct: 10 PGITGLKTGTTELAGQSFIATSTESGMRLLTVIMHADKADKDKYARFTATNSLLNYITNT 69
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKI 326
+ + V + E+ + Q K + I+F+K
Sbjct: 70 YEPNLVLAKGAA---YKGKEASVRDGKEQSVIAVAKNDLKVVQKKNITKQNQLKINFKK- 125
Query: 327 TLLKNKITKK 336
L ITKK
Sbjct: 126 -ELTAPITKK 134
>gi|206813969|gb|ACI22621.1| extended-spectrum beta-lactamase SHV-105 [Klebsiella pneumoniae]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 69/265 (26%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----------LPYYTLLDTNTGHVIAENYPDH 49
MR F + I + + + + + +D +G + D
Sbjct: 1 MRYFRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGSVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ +++ L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIDDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|6273434|emb|CAA74912.2| beta-lactamase class A [Capnocytophaga ochracea]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|33318322|gb|AAQ05031.1|AF467990_1 extended spectrum beta-lactamase TEM [Klebsiella pneumoniae]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ + + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADRVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|467187|gb|AAA17345.1| pbpC [Mycobacterium leprae]
Length = 182
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ + + + D N+G VIA P PAS+ K++ A
Sbjct: 89 IVTAPDTPPVPGDLSAEAWLVADLNSGAVIAARDPHGRHRPASIIKVLLAM 139
>gi|190410144|ref|YP_001966135.1| TEM-1 beta lactamase gene [Neisseria gonorrhoeae]
gi|89112911|gb|ABD61074.1| TEM-1 beta lactamase gene [Neisseria gonorrhoeae]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/274 (16%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P LS ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVLSHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|56311400|emb|CAI29263.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKPAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGTGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|45925922|gb|AAS79107.1| class A beta-lactamase TEM-134 [Citrobacter koseri]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|48473853|emb|CAG34105.1| class A beta-lactamase [Klebsiella oxytoca]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|330878883|gb|EGH13032.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 181
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 55/148 (37%), Gaps = 5/148 (3%)
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A ++A S F+ MN +K LG+ T ++ G+ + T ++ K
Sbjct: 1 AASLAHSYPGGYPAFILAMNAKAKALGMKHTAYVEPTGLSVYNVSTARDLTKLVMAARKY 60
Query: 180 DFPQYMHYFQIKGLEIKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQ 234
+ + K + + Y NT+ V KTGFT +G +V
Sbjct: 61 PMLSELSTTEQKMVTFRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSM 120
Query: 235 GDQSLIAVILGALDRNTRNKVSASLLSM 262
++ + VIL A + T ++ +
Sbjct: 121 ANRPVSVVILDAFGKYTHFADASRIRKW 148
>gi|37778088|gb|AAR02602.1| beta lactamase [Expression vector pVTU260]
gi|37778090|gb|AAR02603.1| beta lactamase [Expression vector pVTU263]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDVGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|166078576|gb|ABY81266.1| beta-lactamase [Escherichia coli]
Length = 273
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 75/265 (28%), Gaps = 14/265 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNK 254
+ + I VI + T +
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDD 270
>gi|484096|gb|AAB59975.1| extended-spectrum beta-lactamase TEM-10 [Klebsiella oxytoca]
Length = 269
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/262 (15%), Positives = 72/262 (27%), Gaps = 25/262 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSG----------- 234
Query: 231 SAIQGDQSLIAVILGALDRNTR 252
A + I LG + +R
Sbjct: 235 -AGKRGSRGIIAALGPDGKPSR 255
>gi|33286378|gb|AAQ01671.1| extended-spectrum beta-lactamase [Escherichia coli]
gi|34558690|gb|AAQ75087.1| extended-spectrum beta-lactamase TEM-121 [Enterobacter aerogenes]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGTGKRGSSGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|241912505|gb|ACS71959.1| beta-lactamase [Basidiomycete basal gene deletion vector pDelcas]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGTRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|684934|gb|AAA87176.1| beta-lactamase [Escherichia coli]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----------LPYYTLLDTNTGHVIAENYPDH 49
MR F + I + + + + + +D +G + D
Sbjct: 1 MRYFRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGSVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|291586635|gb|ADE19118.1| extended-spectrum beta-lactamase TEM-116 [Pseudomonas fluorescens]
Length = 278
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 5 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 65 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 124
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 125 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 184
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 185 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 244
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 245 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 278
>gi|291337179|gb|ADD96657.1| beta-lactamase [Serratia marcescens]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEEQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|269316615|gb|ACZ37307.1| beta-lactamase [Pannonibacter phragmitetus]
gi|269316617|gb|ACZ37308.1| beta-lactamase [Burkholderia cenocepacia]
Length = 285
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 5 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 65 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 124
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 125 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 184
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 185 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 244
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 245 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 278
>gi|225196235|gb|ACN82383.1| TEM-116 beta-lactamase [Aeromonas hydrophila]
gi|225196237|gb|ACN82384.1| TEM-116 beta-lactamase [Aeromonas hydrophila]
gi|225196239|gb|ACN82385.1| TEM-116 beta-lactamase [Aeromonas hydrophila]
gi|225196241|gb|ACN82386.1| TEM-116 beta-lactamase [Aeromonas hydrophila]
gi|225196243|gb|ACN82387.1| TEM-116 beta-lactamase [Aeromonas hydrophila]
gi|225196245|gb|ACN82388.1| TEM-116 beta-lactamase [Aeromonas jandaei]
gi|225196247|gb|ACN82389.1| TEM-116 beta-lactamase [Aeromonas jandaei]
gi|225196249|gb|ACN82390.1| TEM-116 beta-lactamase [Aeromonas jandaei]
gi|225196251|gb|ACN82391.1| TEM-116 beta-lactamase [Aeromonas jandaei]
gi|225196253|gb|ACN82392.1| TEM-116 beta-lactamase [Aeromonas jandaei]
Length = 284
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|145306442|gb|ABP57022.1| beta lactamase [Cloning vector pTrueBlue]
Length = 283
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|47846294|emb|CAG30723.1| hypothetical protein [Hordeum vulgare subsp. vulgare]
gi|254973018|gb|ACT98420.1| BlaD290 [Expression vector RHP-AmpS]
Length = 285
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|55669167|gb|AAV54522.1| beta-lactamase [Enterobacteria phage M13 vector DY3F63]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGALVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|27804803|gb|AAO21433.1| extended-spectrum beta-lactamase/aminoglycoside modifying enzyme
fusion protein [synthetic construct]
Length = 586
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|5650761|gb|AAD45935.1|AF062386_1 inhibitor-resistant beta-lactamase [Klebsiella oxytoca]
Length = 277
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 75/265 (28%), Gaps = 14/265 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMGDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNK 254
+ + I VI + T ++
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDE 270
>gi|74054892|gb|AAZ95767.1| putative TEM beta lactamase [bacterium RRLBTPL IV-3]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|10956148|ref|NP_052129.1| beta-lactamase [Staphylococcus aureus]
gi|10956150|ref|NP_052130.1| beta-lactamase [Staphylococcus aureus]
gi|210613207|ref|ZP_03289627.1| hypothetical protein CLONEX_01829 [Clostridium nexile DSM 1787]
gi|321313692|ref|YP_004205979.1| beta-lactamase TEM [Bacillus subtilis BSn5]
gi|11266199|pir||T51301 beta-lactamase (EC 3.5.2.6) - fission yeast (Schizosaccharomyces
pombe)
gi|67464382|pdb|1ZG4|A Chain A, Tem1 Beta Lactamase
gi|4704644|gb|AAD28190.1|AF110459_3 beta-lactamase [Cloning vector pBBR1-GFP]
gi|4732039|gb|AAD28564.1|AF118921_1 beta-lactamase [alk-system cloning vector pSPZ2Not]
gi|4959728|gb|AAD34468.1|AF136443_1 beta-lactamase [Cloning vector pUC-TP]
gi|5006905|gb|AAD37723.1|AF146395_1 beta-lactamase [Cloning vector pCLZip]
gi|5702092|gb|AAD47138.1|AF061181_2 beta-lactamase [Mammalian expression vector pCI-nGL1-HEGO]
gi|5733495|gb|AAD49607.1|AF147464_1 beta-lactamase [Expression vector pViet]
gi|5802284|gb|AAD51639.1|AF170481_2 beta-lactamase [Cloning vector pUC19RP12]
gi|5802288|gb|AAD51642.1|AF170482_3 beta-lactamase [Cloning vector pST76A-SceP]
gi|5802293|gb|AAD51646.1|AF170483_4 beta-lactamase [Cloning vector pST98-AS]
gi|5834245|gb|AAD53875.1|AF174493_1 beta-lactamase [Cloning vector pCL]
gi|5929924|gb|AAD56648.1|AF178973_3 beta-lactamase [Cloning vector pCS512]
gi|6318859|gb|AAF07048.1|AF178582_3 beta-lactamase [Expression vector pCS316]
gi|6318867|gb|AAF07055.1|AF178583_5 beta-lactamase [Expression vector pSB229]
gi|6457292|gb|AAF09456.1|AF179625_2 Amp [Shuttle vector pCS513]
gi|6457302|gb|AAF09465.1|AF179626_6 Amp [Expression vector pGP100]
gi|6457308|gb|AAF09469.1|AF179628_2 Amp [Shuttle vector pHIGEXhOR]
gi|7108473|gb|AAF36428.1|AF125994_3 beta-lactamase [Shuttle vector pUCP-Nco]
gi|7108477|gb|AAF36431.1|AF125995_3 beta-lactamase [Shuttle vector pUCP-Nde]
gi|7637910|gb|AAF65255.1|AF222336_1 beta-lactamase [Cloning vector pTacSfi]
gi|7715979|gb|AAF68231.1|AF203972_4 Bla [Shuttle vector pBA]
gi|8037918|gb|AAF71532.1|AF253496_2 beta-lactamase precursor [Cloning vector pUC58]
gi|9857880|gb|AAG00917.1|AF270470_1 beta-lactamase [Cloning vector pBIG]
gi|9857883|gb|AAG00919.1|AF269225_1 beta-lactamase [Cloning vector pLITTLE]
gi|9857886|gb|AAG00921.1|AF269226_1 beta lactamase [Cloning vector pTIKL]
gi|9857890|gb|AAG00924.1|AF269235_2 beta lactamase [Cloning vector pDXA-GFP2]
gi|9857894|gb|AAG00927.1|AF269236_2 beta lactamase [Cloning vector pDXA-FLAG]
gi|9857897|gb|AAG00929.1|AF269237_1 beta lactamase [Cloning vector pTX-GFP]
gi|9857901|gb|AAG00932.1|AF269238_1 beta lactamase [Cloning vector pTX-FLAG]
gi|11991617|gb|AAG42304.1|AF305698_1 beta-lactamase [Cloning vector p824]
gi|12082763|gb|AAG48609.1|AF310245_2 beta-lactamase [Cloning vector pGEM58ZNf(-)]
gi|12958277|gb|AAK09280.1|AF311601_3 beta-lactamase [Reporter vector pJDL]
gi|12965139|gb|AAK11473.1|AF334827_2 ampicillin resistance protein [Cloning vector pTurbo-Cre]
gi|13161002|gb|AAK13448.1|AF325903_2 beta-lactamase [Cloning vector pFH2191]
gi|13346452|gb|AAK19747.1|AF347016_2 beta-lactamase [Shuttle vector pYT3]
gi|14009670|gb|AAK51707.1|AF338824_2 beta-lactamase [Cloning vector pVLH/int(+)]
gi|14009673|gb|AAK51709.1|AF338825_2 beta-lactamase [Cloning vector pHLH/int(+)]
gi|14039716|gb|AAK53367.1|AF362545_6 beta-lactamase [Co-reporter vector pHRL-TK]
gi|14039720|gb|AAK53369.1|AF362546_6 beta-lactamase [Co-reporter vector phRL-null]
gi|14039724|gb|AAK53371.1|AF362547_4 beta-lactamase [Co-reporter vector phRL-TK(Int-)]
gi|14039728|gb|AAK53373.1|AF362548_6 beta-lactamase [Co-reporter vector phRL-SV40]
gi|14039732|gb|AAK53375.1|AF362549_6 beta-lactamase [Co-reporter vector phRL-CMV]
gi|14039736|gb|AAK53377.1|AF362550_6 beta-lactamase [Co-reporter vector phRG-B]
gi|14039740|gb|AAK53379.1|AF362551_7 beta-lactamase [Co-reporter vector phRG-TK]
gi|14290103|gb|AAK59252.1|AF379854_2 beta lactamase [Cloning vector pVLH/hsp]
gi|16904154|gb|AAL30779.1|AF434923_2 beta-lactamase [Expression vector pIE1-LUC]
gi|16904157|gb|AAL30781.1|AF434924_2 beta-lactamase [Expression vector pACTIN-LUC]
gi|16904160|gb|AAL30783.1|AF434925_2 beta-lactamase [Expression vector 409-FOR]
gi|16904163|gb|AAL30785.1|AF434926_2 beta-lactamase [Expression vector 409-MUT]
gi|16904166|gb|AAL30787.1|AF434927_2 beta-lactamase [Expression vector 410-FOR]
gi|16904169|gb|AAL30789.1|AF434928_2 beta-lactamase [Expression vector 411-FOR]
gi|16904172|gb|AAL30791.1|AF434929_2 beta-lactamase [Expression vector 411-MUT]
gi|16904175|gb|AAL30793.1|AF434930_2 beta-lactamase [Expression vector 412-FOR]
gi|16904178|gb|AAL30795.1|AF434931_2 beta-lactamase [Expression vector 409-REV]
gi|16904181|gb|AAL30797.1|AF434932_2 beta-lactamase [Expression vector 410-REV]
gi|16904184|gb|AAL30799.1|AF434933_2 beta-lactamase [Expression vector 411-REV]
gi|16904187|gb|AAL30801.1|AF434934_2 beta-lactamase [Expression vector 412-REV]
gi|16930721|gb|AAL32025.1|AF438749_2 beta-lactamase [Cloning vector pANT841]
gi|16930724|gb|AAL32027.1|AF438750_2 beta-lactamase [Cloning vector pANT846]
gi|19550875|gb|AAL91564.1|AF484679_4 beta-lactamase [Cloning vector pRV-9]
gi|20385950|gb|AAM21517.1|AF438205_3 beta lactamase [Mutation screening vector pSPRX]
gi|20454204|gb|AAM22212.1|AF502128_2 beta-lactamase [Transient expression vector pBI221]
gi|21637365|gb|AAM70477.1|AF515846_1 beta-lactamase [Cloning vector pTransgene]
gi|21780277|gb|AAM77667.1|AF521666_2 beta-lactamase [Cloning vector pLOI2065]
gi|28628789|gb|AAO49355.1|AF483548_2 beta lactamase [Mammalian expression vector pHyg-EF-2]
gi|31249538|gb|AAP46190.1|AF515711_3 beta-lactamase [Cloning vector pNRSAL]
gi|58162|emb|CAA45755.1| beta-lactamase [synthetic construct]
gi|58165|emb|CAA45753.1| beta-lactamase [synthetic construct]
gi|58183|emb|CAA46404.1| Beta-lactamase [Cloning vector pGEM-9Zf(-)]
gi|58185|emb|CAA46417.1| beta-lactamase [Cloning vector pCAT-Basic]
gi|58189|emb|CAA46416.1| beta-lactamase [Cloning vector pCAT-Control]
gi|58191|emb|CAA46411.1| beta-lactamase [Cloning vector pCAT-Enhancer]
gi|58195|emb|CAA46414.1| beta-lactamase [Cloning vector pCAT-Promoter]
gi|58198|emb|CAA46393.1| Beta-lactamase [Cloning vector pGEM-2]
gi|58200|emb|CAA46394.1| Beta-lactamase [Cloning vector pGEM-3]
gi|58206|emb|CAA46395.1| Beta-lactamase [Cloning vector pGEM-4]
gi|58218|emb|CAA46420.1| beta-lactamase [Cloning vector pGL2-Basic]
gi|58221|emb|CAA46422.1| beta-lactamase [Cloning vector pGL2-Control]
gi|58224|emb|CAA46424.1| beta-lactamase [Cloning vector pGL2-Enhancer]
gi|58227|emb|CAA46426.1| beta-lactamase [Cloning vector pGL2-Promoter]
gi|58230|emb|CAA46427.1| Beta-lactamase [Cloning vector pSP64]
gi|58232|emb|CAA46428.1| Beta-lactamase [Cloning vector pSP64 (polyA)]
gi|58234|emb|CAA46429.1| Beta-lactamase [Cloning vector pSP65]
gi|58236|emb|CAA46430.1| Beta-lactamase [Cloning vector pSP70]
gi|58238|emb|CAA46431.1| Beta-lactamase [Cloning vector pSP71]
gi|58240|emb|CAA46432.1| Beta-lactamase [Cloning vector pSP72]
gi|58242|emb|CAA46433.1| Beta-lactamase [Cloning vector pSP73]
gi|58245|emb|CAA46435.1| Beta-lactamase [Cloning vector pSV-beta-Galactosidase Control]
gi|146582|gb|AAA24057.1| beta-lactamase [Escherichia coli]
gi|173016|gb|AAA72096.1| putative [Cloning vector pYSVE2]
gi|208895|gb|AAA72533.1| beta-lactamase [unidentified cloning vector]
gi|208898|gb|AAA72635.1| beta-lactamase
gi|387897|gb|AAA72098.1| putative [Cloning vector pYADE4]
gi|403938|gb|AAB61948.1| pre-beta-lactamase [unidentified cloning vector]
gi|434647|gb|AAC40207.1| beta-lactamase [Cloning vector pUC1918]
gi|434651|gb|AAB60533.1| beta-lactamase [Cloning vector pX1918]
gi|434654|gb|AAC53605.1| beta-lactamase [Cloning vector pZ1918]
gi|440201|gb|AAA67177.1| beta-lactamase [Cloning vector pUCGM]
gi|452345|emb|CAA82704.1| beta-lactamase [synthetic construct]
gi|452347|emb|CAA82705.1| unnamed protein product [synthetic construct]
gi|453623|emb|CAA54104.1| beta lactamase [synthetic construct]
gi|453627|emb|CAA54107.1| beta lactamase [synthetic construct]
gi|455365|gb|AAA73141.1| beta-lactamase [unidentified cloning vector]
gi|455366|gb|AAA73139.1| beta-lactamase [unidentified cloning vector]
gi|455367|gb|AAA72527.1| beta-lactamase [Cloning vector pHSG664]
gi|455371|gb|AAA72687.1| beta-lactamase [unidentified cloning vector]
gi|460936|gb|AAB40008.1| beta-lactamase [Cloning vector pUCP18]
gi|460940|gb|AAB40011.1| beta-lactamase [Cloning vector pUCP20]
gi|460944|gb|AAB40015.1| beta-lactamase [Cloning vector pUCP22]
gi|469219|dbj|BAA03488.1| beta-lactamase [Cloning vector pKF2]
gi|499100|gb|AAA73435.1| beta-lactamase [Cloning vector pDB31]
gi|520998|emb|CAA84692.1| beta lactamase [Enterobacteria phage phiX174]
gi|531831|gb|AAA73458.1| beta-lactamase [Cloning vector pSport1]
gi|531835|gb|AAA67219.1| beta-lactamase [Cloning vector pSport2]
gi|537454|gb|AAA66979.1| beta-lactamase [Cloning vector pSG932]
gi|537457|gb|AAA66981.1| beta-lactamase [Cloning vector pSG931]
gi|537460|gb|AAA66983.1| beta-lactamase [Cloning vector pSG930]
gi|537463|gb|AAA66985.1| beta-lactamase [Cloning vector pSG929]
gi|537466|gb|AAA66987.1| beta-lactamase [Cloning vector pSG927]
gi|537469|gb|AAA66989.1| beta-lactamase [Cloning vector pSG928]
gi|537472|gb|AAA66992.1| beta-lactamase [Cloning vector pSG935]
gi|537475|gb|AAA66993.1| beta-lactamase [Cloning vector pSG934]
gi|537478|gb|AAA66995.1| beta-lactamase [Cloning vector pSG933]
gi|537481|gb|AAA66997.1| beta-lactamase [Cloning vector pSG926]
gi|537486|gb|AAA66999.1| beta-lactamase [Cloning vector pSG925]
gi|540253|gb|AAA67265.1| beta-lactamase [Cloning vector pSVSport1]
gi|559519|emb|CAA57679.1| beta-lactamase [synthetic construct]
gi|567891|gb|AAA53119.1| beta-lactamase [unidentified cloning vector]
gi|567894|gb|AAA53121.1| beta-lactamase [unidentified cloning vector]
gi|575448|gb|AAA67269.1| beta-lactamase [Cloning vector pTRXFUS]
gi|595704|gb|AAA57085.1| beta-lactamase [unidentified cloning vector]
gi|595763|gb|AAA56731.1| beta-lactamase [unidentified cloning vector]
gi|595766|gb|AAA56733.1| beta-lactamase [unidentified cloning vector]
gi|595769|gb|AAA56735.1| beta-lactamase [unidentified cloning vector]
gi|595771|gb|AAA56736.1| beta-lactamase [unidentified cloning vector]
gi|595776|gb|AAA56739.1| beta-lactamase [unidentified cloning vector]
gi|595778|gb|AAA56740.1| beta-lactamase [unidentified cloning vector]
gi|595781|gb|AAA56742.1| beta-lactamase [unidentified cloning vector]
gi|603173|gb|AAA57321.1| beta-lactamase [Cloning vector pUCSce]
gi|603176|gb|AAA57323.1| beta-lactamase [Cloning vector pEX100T]
gi|603180|gb|AAA57326.1| beta-lactamase [Cloning vector pX1918G]
gi|603184|gb|AAA57329.1| beta-lactamase [Cloning vector pX1918GT]
gi|644833|gb|AAA64568.1| beta-lactamase [Cloning vector pGlac]
gi|644836|gb|AAA64570.1| beta-lactamase [Cloning vector pGlacRSV]
gi|682655|gb|AAA74941.1| beta-lactamase [Cloning vector pYEULCBX]
gi|691758|gb|AAA62619.1| beta-lactamase [Cloning vector YIp351]
gi|806874|gb|AAA66378.1| beta-lactamase [Cloning vector pLUC/LIC]
gi|806877|gb|AAA66380.1| beta-lactamase [Cloning vector pBluescript II KS<+>/LIC]
gi|806880|gb|AAA66382.1| beta-lactamase [Cloning vector pGEM-7Zf<+>/LIC-R]
gi|806882|gb|AAA66383.1| beta-lactamase [Cloning vector pT7/Nde]
gi|806888|gb|AAA66385.1| beta-lactamase [Cloning vector pCAT/LIC]
gi|806891|gb|AAA66387.1| beta-lactamase [Cloning vector pGEM-7Zf<+>/LIC-F]
gi|806893|gb|AAA66388.1| beta-lactamase [Cloning vector pT7/Nco]
gi|833824|gb|AAB06693.1| beta-lactamase [Cloning vector pBBR1MCS-4]
gi|894141|gb|AAA69676.1| beta-lactamase [Cloning vector p35S-GFP]
gi|915334|gb|AAA85559.1| ampicillin resistance protein [Cloning vector pKMZB]
gi|984891|gb|AAC53607.1| beta-lactamase [Cloning vector pBSL119]
gi|984894|gb|AAC53609.1| beta-lactamase [Cloning vector pBSL121]
gi|984897|gb|AAC53611.1| beta-lactamase [Cloning vector pBSL128]
gi|984900|gb|AAC53613.1| beta-lactamase [Cloning vector pBSL130]
gi|984903|gb|AAC53615.1| beta-lactamase [Cloning vector pBSL141]
gi|984906|gb|AAC53617.1| beta-lactamase [Cloning vector pBSL142]
gi|984908|gb|AAC53618.1| beta-lactamase [Cloning vector pBSL159]
gi|984911|gb|AAC53620.1| beta-lactamase [Cloning vector pBSL168]
gi|984919|gb|AAC53626.1| beta-lactamase [Cloning vector pBSL190]
gi|984922|gb|AAC53628.1| beta-lactamase [Cloning vector pBSL193]
gi|984925|gb|AAC53630.1| beta-lactamase [Cloning vector pBSL97]
gi|984928|gb|AAC53632.1| beta-lactamase [Cloning vector pBSL99]
gi|984930|gb|AAC53633.1| beta-lactamase [Cloning vector pBSL167]
gi|988212|gb|AAA96384.1| ampicillin resistance [Cloning vector pAS2-1]
gi|1016009|gb|AAC33181.1| beta-lactamase [Cloning vector pDAP2]
gi|1045527|gb|AAB39956.1| beta-lactamase [Staphylococcus aureus]
gi|1045529|gb|AAB39957.1| beta-lactamase [Staphylococcus aureus]
gi|1045582|gb|AAA80248.1| beta-lactamase [Cloning vector pHUKH1]
gi|1045588|gb|AAA80253.1| beta-lactamase [Cloning vector pHUKH2]
gi|1045594|gb|AAA80258.1| beta-lactamase [Cloning vector pHUKH3]
gi|1045600|gb|AAA80263.1| beta-lactamase [Cloning vector pHUKH4]
gi|1049258|gb|AAA80349.1| beta-lactamase [Shuttle vector pAD-GAL4]
gi|1049261|gb|AAA80351.1| beta-lactamase [Shuttle vector pBD-GAL4]
gi|1052970|gb|AAA80673.1| beta-lactamase [Cloning vector YRTAG300]
gi|1073247|gb|AAA81772.1| beta-lactamase [Cloning vector pBVI02]
gi|1132427|gb|AAA84371.1| beta-lactamase [Cloning vector pTriplEx]
gi|1144477|gb|AAA86124.1| beta lactamase [Cloning vector pUCP20T]
gi|1144524|gb|AAA84935.1| beta-lactamase [Cloning vector pI-LINK]
gi|1150735|gb|AAA85183.1| beta-lactamase [Cloning vector pTAG4]
gi|1197673|gb|AAA88780.1| beta-lactamase [Cloning vector pCI]
gi|1197676|gb|AAA88782.1| beta-lactamase [Cloning vector pCI-neo]
gi|1197678|gb|AAA88783.1| beta-lactamase [Cloning vector pSI]
gi|1197681|gb|AAA88785.1| beta-lactamase [Cloning vector pSP-luc+]
gi|1197684|gb|AAA88787.1| beta-lactamase [Cloning vector pSP-luc+NF]
gi|1200458|gb|AAA89081.1| beta-lactamase [Cloning vector pAdVantage]
gi|1200461|gb|AAA89083.1| beta-lactamase [Cloning vector pGL3-Basic]
gi|1200464|gb|AAA89085.1| beta-lactamase [Cloning vector pGL3-Control]
gi|1200467|gb|AAA89087.1| beta-lactamase [Cloning vector pGL3-Enhancer]
gi|1200470|gb|AAA89089.1| beta-lactamase [Cloning vector pGL3-Promoter]
gi|1200492|gb|AAA89091.1| beta-lactamase [Cloning vector PinPoint Xa-1]
gi|1200495|gb|AAA89093.1| beta-lactamase [Cloning vector PinPoint Xa-2]
gi|1200498|gb|AAA89095.1| beta-lactamase [Cloning vector PinPoint Xa-3]
gi|1228976|emb|CAA65432.1| beta-lactamase [synthetic construct]
gi|1228978|emb|CAA65428.1| beta-lactamase [synthetic construct]
gi|1228980|emb|CAA65429.1| beta-lactamase [synthetic construct]
gi|1277159|gb|AAB08400.1| beta-lactamase [Expression vector pNEX]
gi|1277161|gb|AAB08055.1| beta-lactamase [Expression vector pNEX delta]
gi|1335983|gb|AAB01196.1| beta-lactamase [Cloning vector pVP-Nco]
gi|1335986|gb|AAB01198.1| beta-lactamase [Cloning vector pVP-HA1]
gi|1335989|gb|AAB01200.1| beta-lactamase [Cloning vector pVP-HA2]
gi|1335992|gb|AAB01202.1| beta-lactamase [Cloning vector pVP-HA3]
gi|1335995|gb|AAB01204.1| beta-lactamase [Cloning vector pVP-FLAG]
gi|1345435|dbj|BAA12825.1| beta-lactamase [Cloning vector pBEN66]
gi|1354499|gb|AAB07867.1| beta-lactamase [Cloning vector pCI-nGFP-C656G]
gi|1373275|gb|AAB02236.1| beta lactamase [Cloning vector pODB8]
gi|1377903|gb|AAB02569.1| beta-lactamase [Baculovirus transfer vector pBacPAK-His1]
gi|1377905|gb|AAB02570.1| beta-lactamase [Baculovirus transfer vector pBacPAK-His2]
gi|1377907|gb|AAB02571.1| beta-lactamase [Baculovirus transfer vector pBacPAK-His3]
gi|1399734|gb|AAB39972.1| beta-lactamase [Reporter vector pCAT3-Basic vector]
gi|1399737|gb|AAB39974.1| beta-lactamase [Reporter vector pCAT3-Control vector]
gi|1399740|gb|AAB39976.1| beta-lactamase [Reporter vector pCAT3-Enhancer vector]
gi|1399743|gb|AAB39978.1| beta-lactamase [Reporter vector pCAT3-Promoter vector]
gi|1488685|gb|AAC53681.1| beta-lactamase [Recombination vector pAdlox]
gi|1490530|gb|AAB06049.1| beta-lactamase [Cloning vector pGFPuv]
gi|1515458|gb|AAC12960.1| beta-lactamase [Cloning vector pOPRSVIMCS]
gi|1527193|gb|AAB88908.1| beta-lactamase [Expression vector pESP-I]
gi|1561768|gb|AAB08871.1| beta-lactamase [Expression vector pNEX2]
gi|1561770|gb|AAB08872.1| beta-lactamase [Expression vector pNEX3]
gi|1595818|gb|AAB49942.1| AmpR [Cloning vector pGBD-C1]
gi|1595822|gb|AAB49945.1| AmpR [Cloning vector pGBD-C2]
gi|1595826|gb|AAB49948.1| AmpR [Cloning vector pGBD-C3]
gi|1595830|gb|AAB49951.1| AmpR [Cloning vector pGBDU-C1]
gi|1595834|gb|AAB49954.1| AmpR [Cloning vector pGBDU-C2]
gi|1595838|gb|AAB49957.1| AmpR [Cloning vector pGBDU-C3]
gi|1595842|gb|AAB49960.1| AmpR [Cloning vector pGAD-C1]
gi|1595846|gb|AAB49963.1| AmpR [Cloning vector pGAD-C2]
gi|1595850|gb|AAB49966.1| AmpR [Cloning vector pGAD-C3]
gi|1649039|gb|AAB17670.1| beta-lactamase [Cloning Vector pJF5]
gi|1680652|gb|AAC44581.1| beta-lactamase [Methylobacillus sp. KT1]
gi|1684625|emb|CAA70547.1| blaTEM [synthetic construct]
gi|1684628|emb|CAA70549.1| blaTEM [synthetic construct]
gi|1685275|gb|AAB36779.1| beta-lactamase [Assembly vector pNOMAD1]
gi|1685277|gb|AAB36780.1| beta-lactamase [Assembly vector pNOMAD2]
gi|1698775|gb|AAB37298.1| beta-lactamase [Cloning vector pZGT5]
gi|1724063|gb|AAC53676.1| beta-lactamase [Cloning vector pRAY-1]
gi|1769872|emb|CAA71018.1| beta-lactamase [unidentified cloning vector]
gi|1769879|emb|CAA71022.1| beta-lactamase [unidentified cloning vector]
gi|1834348|emb|CAA71925.1| beta-lactamase [synthetic construct]
gi|1834351|emb|CAA71923.1| beta-lactamase [synthetic construct]
gi|1842042|gb|AAB91427.1| beta-lactamase [Expression vector pESP-2]
gi|1899164|gb|AAB49977.1| beta-lactamase [unidentified cloning vector]
gi|1899168|gb|AAB49980.1| beta-lactamase [unidentified cloning vector]
gi|1899171|gb|AAB49982.1| beta-lactamase [unidentified cloning vector]
gi|1902779|dbj|BAA19239.1| beta-lactamase [Cloning vector pBEN77]
gi|1902897|dbj|BAA19465.1| beta-lactamase [Cloning vector pBEN70]
gi|2058307|emb|CAA73226.1| beta lactamase [Escherichia coli K-12]
gi|2071946|gb|AAB53628.1| beta-lactamase [Expression vector pBSII-LUCINT]
gi|2190697|gb|AAB64384.1| beta-lactamase [unidentified cloning vector]
gi|2190702|gb|AAB64387.1| beta-lactamase [unidentified cloning vector]
gi|2190705|gb|AAB64389.1| beta-lactamase [unidentified cloning vector]
gi|2190708|gb|AAB64391.1| beta-lactamase [unidentified cloning vector]
gi|2190710|gb|AAB64392.1| beta-lactamase [unidentified cloning vector]
gi|2190713|gb|AAB64394.1| beta-lactamase [unidentified cloning vector]
gi|2190715|gb|AAB64395.1| beta-lactamase [unidentified cloning vector]
gi|2190719|gb|AAB64398.1| beta-lactamase [unidentified cloning vector]
gi|2190724|gb|AAB64401.1| beta-lactamase [unidentified cloning vector]
gi|2190727|gb|AAB64403.1| beta-lactamase [unidentified cloning vector]
gi|2190730|gb|AAB64405.1| beta-lactamase [unidentified cloning vector]
gi|2190733|gb|AAB64407.1| beta-lactamase [unidentified cloning vector]
gi|2208942|emb|CAA73316.1| lactamase [synthetic construct]
gi|2218118|gb|AAC33183.1| beta-lactamase [synthetic construct]
gi|2218121|gb|AAC33185.1| beta-lactamase [synthetic construct]
gi|2218145|gb|AAB61669.1| beta-lactamase [Cloning vector pEX18T]
gi|2239040|emb|CAA73270.1| lactamase [synthetic construct]
gi|2267565|gb|AAB63580.1| beta lactamase [DNA-binding vector pODB80]
gi|2281527|gb|AAB65664.1| beta-lactamase [Cloning vector pGFPCR]
gi|2293132|gb|AAB68659.1| ampicillin resistance [unidentified cloning vector]
gi|2342751|gb|AAB67757.1| beta-lactamase [Shuttle vector pSEmp18BBXM]
gi|2353793|gb|AAB68846.1| beta-lactamase [Cloning vector pUC-JK]
gi|2358011|gb|AAB68952.1| beta-lactamase [Cloning vector pGR8]
gi|2440158|emb|CAA75107.1| beta-lactamase [Phagemid cloning vector pTZ19R]
gi|2440161|emb|CAA75109.1| beta-lactamase [Phagemid cloning vector pTZ19U]
gi|2462914|emb|CAA74920.1| lactamase [synthetic construct]
gi|2462916|emb|CAA74921.1| lactamase [synthetic construct]
gi|2462920|emb|CAA74926.1| beta lactamase [synthetic construct]
gi|2522427|gb|AAB81041.1| beta-lactamase [Cloning vector pWSK29]
gi|2582511|gb|AAB82574.1| beta-lactamase [Co-reporter vector pRL-CMV]
gi|2582514|gb|AAB82576.1| beta-lactamase [Co-reporter vector pRL-Null]
gi|2582517|gb|AAB82578.1| beta-lactamase [Co-reporter vector pRL-SV40]
gi|2582520|gb|AAB82580.1| beta-lactamase [Co-reporter vector pRL-TK]
gi|2598099|gb|AAB83988.1| beta-lactamase [Expression vector pLUC+]
gi|2598102|gb|AAB83990.1| beta-lactamase [Expression vector pTATALUC+]
gi|2598105|gb|AAB83992.1| beta-lactamase [Expression vector ptkLUC+]
gi|2598108|gb|AAB83994.1| beta-lactamase [Expression vector pCMVtkLUC+]
gi|2623119|gb|AAC53719.1| beta-lactamase [Expression vector pIB1]
gi|2623122|gb|AAC53721.1| beta-lactamase [Expression vector pIB2]
gi|2623125|gb|AAC53723.1| beta-lactamase [Expression vector pIB3]
gi|2623128|gb|AAC53725.1| beta-lactamase [Expression vector pIB4]
gi|2623974|emb|CAA05682.1| beta-lactamase [synthetic construct]
gi|2623980|emb|CAA05685.1| beta-lactamase [synthetic construct]
gi|2623982|emb|CAA05686.1| beta-lactamase [synthetic construct]
gi|2623986|emb|CAA05689.1| beta-lactamase [synthetic construct]
gi|2654778|gb|AAB88045.1| pre-beta-lactamase [Phagemid cloning vector pATCH1]
gi|2656022|dbj|BAA23652.1| beta-lactamase [Cloning vector pAP3neo]
gi|2739059|gb|AAC31621.1| beta-lactamase [Cloning vector pUC-GM-INT]
gi|2739065|gb|AAC31624.1| beta-lactamase [unidentified cloning vector]
gi|2739069|gb|AAC31627.1| beta-lactamase [unidentified cloning vector]
gi|2769263|emb|CAA04868.1| beta-lactamase [Escherichia coli]
gi|2801656|gb|AAC40217.1| beta-lactamase [Cloning vector yGALset351]
gi|2801658|gb|AAC40218.1| beta-lactamase [Cloning vector yGALset352]
gi|2801660|gb|AAC40219.1| beta-lactamase [Cloning vector yGALset401]
gi|2801662|gb|AAC40220.1| beta-lactamase [Cloning vector yGALset983]
gi|2801664|gb|AAC40221.1| beta-lactamase [Cloning vector yGALset984]
gi|2801666|gb|AAC40222.1| beta-lactamase [Cloning vector yGALset985]
gi|2852396|gb|AAC40209.1| beta-lactamase [Cloning vector pBIOTRX-BirA]
gi|2961157|gb|AAC27034.1| beta lactamase [site-specific excision vector pFLP2]
gi|2981188|gb|AAC78772.1| beta-lactamase [Expression vector pYZ1N]
gi|2981193|gb|AAC78776.1| beta-lactamase [Expression vector pYZ3N-GFP]
gi|3002524|gb|AAC08735.1| ampicillin resistance protein [Expression vector pRIBOTEX]
gi|3025716|gb|AAC12727.1| B-lactamase [Cloning vector pVLH-1]
gi|3108235|gb|AAC15801.1| ampicillin resistance protein [Eukaryotic expression vector
pCR3.1mBCL-XL]
gi|3114618|gb|AAD08914.1| ampicillin resistance protein [Cloning vector pFR-Luc]
gi|3123922|gb|AAC40215.1| beta-lactamase [Reporter vector p2luc]
gi|3136319|gb|AAC78829.1| beta-lactamase [Expression vector pYZ41N]
gi|3136323|gb|AAC78832.1| beta-lactamase [Expression vector pYZ81N]
gi|3243010|gb|AAC23868.1| beta-lactamase [Expression vector pBEVY-A]
gi|3243013|gb|AAC23870.1| beta-lactamase [Expression vector pBEVY-GA]
gi|3243016|gb|AAC23872.1| beta-lactamase [Expression vector pBEVY-GL]
gi|3243018|gb|AAC23873.1| beta-lactamase [Expression vector pBEVY-GT]
gi|3243021|gb|AAC23875.1| beta-lactamase [Expression vector pBEVY-GU]
gi|3243024|gb|AAC23877.1| beta-lactamase [Expression vector pBEVY-L]
gi|3243027|gb|AAC23879.1| beta-lactamase [Expression vector pBEVY-T]
gi|3243030|gb|AAC23881.1| beta-lactamase [Expression vector pBEVY-U]
gi|3273768|gb|AAC24837.1| ampicillin resistance protein [Cloning vector PCMV6-XL4]
gi|3273770|gb|AAC24838.1| ampicillin resistance protein [Cloning vector PCMV6-XL3]
gi|3435309|gb|AAC32394.1| beta-lactamase [Expression vector pSKAP/S]
gi|3808122|emb|CAA09781.1| beta-lactamase [Promoter search vector pME4507]
gi|3834581|gb|AAC72101.1| beta-lactamase [Dual pho-lac fusion vector pMA632]
gi|3882023|emb|CAA77108.1| beta lactamase [Expression vector pSTE2-215(Yol)]
gi|4028600|gb|AAC97515.1| beta-lactamase [Cloning vector pHR'-CMVLacZ]
gi|4097014|gb|AAD10134.1| beta-lactamase [Expression vector pBMRz]
gi|4097016|gb|AAD10135.1| beta-lactamase [Expression vector pBRz]
gi|4097018|gb|AAD10136.1| beta-lactamase [Expression vector pB5T-MRz]
gi|4097020|gb|AAD10137.1| beta-lactamase [Expression vector pB10T-MRz]
gi|4210486|gb|AAD11973.1| beta-lactamase [Cloning vector pFR-Bgal]
gi|4379389|emb|CAA75111.1| beta-lactamase [Cloning vector pUC57]
gi|4455912|emb|CAB37331.1| beta-lactamase [Cloning vector pU6H2MYC]
gi|4455915|emb|CAB37333.1| beta-lactamase [Cloning vector pU6H3HA]
gi|4455918|emb|CAB37335.1| beta-lactamase [Cloning vector pU6H3VSV]
gi|5354162|gb|AAD42380.1| beta-lactamase [Cloning vector pCMV-AD]
gi|5420150|emb|CAA46406.2| beta-lactamase [Cloning vector pGEM-13Zf(+)]
gi|5420375|emb|CAA46405.2| Beta-lactamase [Cloning vector pGEM-11Zf(+)]
gi|5441564|emb|CAB46857.1| Beta-lactamase [Cloning vector pGEM-11Zf(-)]
gi|5531233|emb|CAA46398.2| beta-lactamase [Cloning vector pGEM-3Zf(+)]
gi|5640090|emb|CAB51568.1| beta-lactamase [Expression vector pCDPT]
gi|5701826|emb|CAA46400.2| Beta-lactamase [Cloning vector pGEM-5Zf(+)]
gi|5758123|gb|AAD50688.1| beta-lactamase [Cloning vector pUNI(Amp)]
gi|5758125|gb|AAD50689.1| beta-lactamase [Cloning vector pUNI(Amp)-MYC3]
gi|5758127|gb|AAD50690.1| beta-lactamase [Cloning vector pUNI(Amp)-HA3]
gi|5758129|gb|AAD50691.1| beta-lactamase [Cloning vector pUNI(Amp)-GFP]
gi|5758131|gb|AAD50692.1| beta-lactamase [Cloning vector pUNI(Amp)-GST]
gi|5758133|gb|AAD50693.1| beta-lactamase [Cloning vector pUNI(Amp)-DBD]
gi|5758135|gb|AAD50694.1| beta-lactamase [Cloning vector pUNI(Amp)-AD]
gi|6010469|gb|AAF01143.1| beta-lactamase [Integrative vector pWLG11]
gi|6010472|gb|AAF01145.1| beta-lactamase [Integrative expression vector pWLG13]
gi|6010475|gb|AAF01147.1| beta-lactamase [Integrative expression vector pWLG14]
gi|6010478|gb|AAF01149.1| beta-lactamase [Expression shuttle vector pWLG30]
gi|6457347|gb|AAF09486.1| beta lactamase [Cloning vector pTEX-Z]
gi|6467481|gb|AAF13157.1| ampicillin-resistance protein [Integration vector pLOI2223]
gi|6467487|gb|AAF13160.1| ampicillin-resistance protein [Integration vector pLOI2226]
gi|6687357|emb|CAA46403.2| Beta-lactamase [Cloning vector pGEM-7Zf(-)]
gi|6782313|emb|CAA46396.2| beta-lactamase [Cloning vector pGEM-3Z]
gi|6782315|emb|CAA46397.2| beta-lactamase [Cloning vector pGEM-4Z]
gi|6822255|emb|CAB70976.1| beta-lactamase [Synechocystis promoter probe vector pIGA]
gi|6901347|emb|CAB71924.1| beta-lactamase [Synechocystis promoter probe vector pILA]
gi|7340793|emb|CAA08827.1| beta-lactamase [synthetic construct]
gi|7380885|dbj|BAA93041.1| beta-lactamase [Shuttle vector pRES19]
gi|7799032|emb|CAB90821.1| beta-lactamase [Cloning vector pKID18]
gi|7799035|emb|CAB90823.1| beta-lactamase [Cloning vector pKID19]
gi|8050588|gb|AAF71714.1| beta-lactamase [Cloning vector pUC21]
gi|8216947|emb|CAA46399.2| Beta-lactamase [Cloning vector pGEM-3Zf(-)]
gi|8216949|emb|CAA46401.2| Beta-lactamase [Cloning vector pGEM-5Zf(-)]
gi|8216951|emb|CAA46402.2| Beta-lactamase [Cloning vector pGEM-7Zf(+)]
gi|8216953|emb|CAA46409.2| Beta-lactamase [Cloning vector pGEMEX-1]
gi|8216955|emb|CAA46410.2| Beta-lactamase [Cloning vector pGEMEX-2]
gi|8250169|emb|CAA46408.2| Beta-lactamase [Cloning vector pGEM-luc]
gi|8272486|gb|AAF74222.1| beta-lactamase [Shuttle vector pPha-T1]
gi|8346633|emb|CAB93899.1| penicillin beta-lactamase [Artificial vector pLoxCat2]
gi|8346636|emb|CAB93901.1| penicillin beta-lactamase [Artificial vector pLoxGen4]
gi|8346639|emb|CAB93903.1| penicillin beta-lactamase [Artificial vector pLoxKan2]
gi|8346642|emb|CAB93905.1| penicillin beta-lactamase [Artificial vector pLoxCat4]
gi|8843953|gb|AAF80182.1| beta-lactamase precursor [Expression vector pSB2991]
gi|9587165|gb|AAF89183.1| beta-lactamase [Cloning Vector pACT]
gi|9587170|gb|AAF89187.1| beta-lactamase [Cloning Vector pG5luc]
gi|10504975|gb|AAG18332.1| beta-lactamase [Cloning vector pUC6S]
gi|11061109|emb|CAC14452.1| penicillin beta-lactamase [Cloning vector pBPSCat2]
gi|11061116|emb|CAC14455.1| penicillin beta-lactamase [Cloning vector pBPSGen4]
gi|11061122|emb|CAC14458.1| penicillin beta-lactamase [Cloning vector pBPSKan2]
gi|11344868|gb|AAG34513.1| ampicillin resistance protein [PCR template vector pUG30]
gi|11344872|gb|AAG34516.1| ampicillin resistance protein [recombinase expression vector pSH47]
gi|11344876|gb|AAG34519.1| ampicillin resistance protein [C-terminal GFP fusion vector pUG23]
gi|11344880|gb|AAG34522.1| ampicillin resistance protein [N-terminal GFP fusion vector pUG34]
gi|11344884|gb|AAG34525.1| ampicillin resistance protein [recombinase expression vector pSH62]
gi|11344887|gb|AAG34527.1| ampicillin resistance protein [Cloning vector pUG26]
gi|11344891|gb|AAG34530.1| ampicillin resistance protein [C-terminal GFP fusion vector pUG35]
gi|11344894|gb|AAG34532.1| ampicillin resistance protein [PCR template vector pJJH726]
gi|11344898|gb|AAG34535.1| ampicillin resistance protein [recombinase expression vector pSH63]
gi|11344901|gb|AAG34537.1| ampicillin resistance protein [PCR template vector pUG27]
gi|11344905|gb|AAG34540.1| ampicillin resistance protein [N-terminal GFP fusion vector pUG36]
gi|11344908|gb|AAG34542.1| ampicillin resistance protein [PCR template vector pJJH727]
gi|11344911|gb|AAG34544.1| ampicillin resistance protein [PCR template vector pUG6]
gi|11344914|gb|AAG34546.1| ampicillin resistance protein [PCR template vector pUG66]
gi|11344917|gb|AAG34548.1| ampicillin resistance protein [Cloning vector pUG7]
gi|11344920|gb|AAG34550.1| ampicillin resistance protein [recombinase expression vector pSH65]
gi|12034710|gb|AAG45963.1| beta lactamase [Expression vector AF286076]
gi|12034713|gb|AAG45964.1| beta lactamase [Expression vector AF286077]
gi|12584847|gb|AAG59856.1| beta-lactamase [Cloning vector pSGHV0]
gi|12698838|gb|AAK01700.1| ampicillin resistance protein [Cloning vector pExchange 1]
gi|12698840|gb|AAK01701.1| ampicillin resistance protein [Expression vector pExchange 2]
gi|12698915|gb|AAK01733.1| ampicillin resistance protein [Envelope expression vector pVpack
10A1]
gi|12831144|gb|AAK08491.1| beta-lactamase [HIV-1 vector pNL4-3]
gi|13027703|gb|AAK08634.1| beta-lactamase [Integration vector pINT]
gi|13236870|gb|AAK16201.1| beta-lactamase [Cloning vector pUC13]
gi|13345298|gb|AAK19284.1| beta-lactamase [Cloning vector pPOP]
gi|13508479|gb|AAK27302.1| beta-lactamase [Binary vector pPAM]
gi|14456626|emb|CAC41115.1| beta lactamase [Cloning vector pGRL2]
gi|14517315|gb|AAK62568.1| beta-lactamase [Cloning vector pJAP8]
gi|14594738|emb|CAC40642.1| beta lactamase [Cloning vector pGRU1]
gi|14594742|emb|CAC40631.1| beta lactamase [Cloning vector pGRU3]
gi|14594746|emb|CAC40624.1| beta lactamase [Cloning vector pGRU2]
gi|14594750|emb|CAC40617.1| beta lactamase [Cloning vector pGIL2]
gi|14594754|emb|CAC40627.1| beta lactamase [Cloning vector pGRL3]
gi|14594758|emb|CAC41106.1| beta lactamase [Cloning vector pGIU3]
gi|14594762|emb|CAC41120.1| beta lactamase [Cloning vector pGIU1]
gi|14594766|emb|CAC41097.1| beta lactamase [Cloning vector pGIL3]
gi|14594770|emb|CAC41112.1| beta lactamase [Cloning vector pGIL1]
gi|14594774|emb|CAC41100.1| beta lactamase [Cloning vector pGRL1]
gi|14594796|emb|CAC40620.1| beta lactamase [Cloning vector pGIU2]
gi|14994092|gb|AAK76420.1| beta-lactamase [Cloning vector pAAV-RC]
gi|14994095|gb|AAK76422.1| beta-lactamase [Cloning vector pAAV-LacZ]
gi|14994097|gb|AAK76423.1| beta-lactamase [Cloning vector pHelper]
gi|14994099|gb|AAK76424.1| beta-lactamase [Cloning vector pCMV-MCS]
gi|15072759|emb|CAC47941.1| beta-lactamase [Cloning vector pHCMV-LCMV-GP(WE-HPI)]
gi|15072762|emb|CAC47943.1| beta-lactamase [Cloning vector pHCMV-LCMV-GP(WE)]
gi|15072765|emb|CAC47945.1| beta-lactamase [Cloning vector pHCMV-VSV-G]
gi|15072768|emb|CAC47947.1| beta-lactamase [Cloning vector pHCMV-A-MLVenv]
gi|15148787|gb|AAK84839.1| beta-lactamase [Cloning vector pAAV-MCS]
gi|15554331|gb|AAL02034.1| beta-lactamase [Template plasmid pKD3]
gi|15554334|gb|AAL02036.1| beta-lactamase [Template plasmid pKD4]
gi|15554337|gb|AAL02038.1| beta-lactamase [Template plasmid pKD13]
gi|15554344|gb|AAL02044.1| beta-lactamase [Red recombinase plasmid pKD20]
gi|15554351|gb|AAL02050.1| beta-lactamase [Red recombinase plasmid pKD46]
gi|15982215|emb|CAC86250.1| ampicillin resistance protein [Cloning vector pHANNIBAL]
gi|16118710|gb|AAL14558.1| beta-lactamase [Cloning vector pCNS]
gi|16209074|gb|AAL09851.1| bla [CRIM helper plasmid pAH57]
gi|16209080|gb|AAL09854.1| bla [CRIM plasmid pAH68]
gi|16209085|gb|AAL09858.1| bla [CRIM helper plasmid pAH69]
gi|16209091|gb|AAL09861.1| bla [CRIM plasmid pAH81]
gi|16209097|gb|AAL09866.1| bla [CRIM helper plasmid pAH83]
gi|16209116|gb|AAL09878.1| bla [CRIM helper plasmid pAH122]
gi|16209123|gb|AAL09882.1| bla [CRIM helper plasmid pAH123]
gi|16209130|gb|AAL09887.1| bla [CRIM helper plasmid pAH129]
gi|16209135|gb|AAL09891.1| bla [CRIM helper plasmid pAH130]
gi|16209142|gb|AAL09896.1| bla [CRIM helper plasmid pAH131]
gi|16209185|gb|AAL09918.1| bla [CRIM helper plasmid pINT-ts]
gi|17530180|gb|AAL40736.1| beta-lactamase [synthetic construct]
gi|17530183|gb|AAL40738.1| beta-lactamase [synthetic construct]
gi|17530187|gb|AAL40741.1| beta-lactamase [synthetic construct]
gi|18140171|gb|AAL59003.1| beta-lactamase [Expression vector pFHC2101]
gi|18252135|gb|AAL61982.1| beta lactamase Bla [Expression vector pANT1200]
gi|18766964|gb|AAL79197.1| beta-lactamase [Cloning vector pNOT218]
gi|18997121|gb|AAL83302.1| AmpR [Expression vector pCMVTNT(TM)]
gi|18997125|gb|AAL83304.1| AmpR [Expression vector pTNT(TM)]
gi|22000952|gb|AAM82291.1| beta-lactamase [Transposon delivery vector pSC189]
gi|22001015|gb|AAM82246.1| beta lactamase [Expression vector pCMH148]
gi|22001017|gb|AAM82247.1| beta lactamase [Expression vector pCMH149]
gi|22347654|gb|AAM95950.1| beta-lactamase [Cloning vector pDblet]
gi|22651572|gb|AAM19718.1| beta-lactamase [Allelic exchange vector pCM184]
gi|22651576|gb|AAM19721.1| beta-lactamase [Allelic exchange vector pCM351]
gi|23429673|gb|AAM98715.1| B-lactamase [cloning vector pSM565]
gi|23821170|emb|CAD53306.1| beta-lactamase [Cloning vector pDXA-3hygro]
gi|23821173|emb|CAD53308.1| beta-lactamase [Cloning vector pDXA-CFP]
gi|23821177|emb|CAD53311.1| beta-lactamase [Cloning vector pDXA-yFP]
gi|23821181|emb|CAD53292.1| beta-lactamase [Cloning vector pDXA-CFP-MCS]
gi|23821185|emb|CAD53295.1| beta-lactamase [Cloning vector pDXA-YFP-MCS]
gi|23821189|emb|CAD53298.1| beta-lactamase [Cloning vector pDXA-YFP-NotI]
gi|23821193|emb|CAD53301.1| beta-lactamase [Cloning vector pDXA-MCS-YFP]
gi|23821197|emb|CAD53304.1| beta-lactamase [Cloning vector pDXA-3strep]
gi|23821200|emb|CAD53314.1| beta-lactamase [Cloning vector pDXA-3FLAG]
gi|23821203|emb|CAD53316.1| beta-lactamase [Cloning vector pDXA-GST]
gi|25990176|gb|AAN74641.1| beta-lactamase [Cloning vector pCAT-3']
gi|27524898|emb|CAC87990.1| beta-lactamase [Binary cloning vector pAC161]
gi|27652164|gb|AAO17064.1| beta lactamase [synthetic construct]
gi|27803715|gb|AAO21932.1| beta-lactamase [Expression vector pYPX251]
gi|28170641|emb|CAD61222.1| ampicillin resistance protein [synthetic construct]
gi|28170644|emb|CAD61224.1| ampicillin resistance protein [synthetic construct]
gi|28394602|gb|AAO38722.1| beta-lactamase [Expression vector pYPX4062]
gi|28395448|gb|AAO39006.1| beta-lactamase [Cloning vector pFabZip1]
gi|28412262|gb|AAO39982.1| beta-lactamase [Shuttle vector pSOS96]
gi|28412269|gb|AAO39988.1| beta-lactamase [Shuttle vector pSOS94]
gi|28412276|gb|AAO39994.1| beta-lactamase [Shuttle vector pSOS95]
gi|28864236|gb|AAO48590.1| beta-lactamase [Expression vector pBS-35S-Rluc]
gi|28864239|gb|AAO48592.1| beta-lactamase [Expression vector pBS-35S-YFP]
gi|28864242|gb|AAO48594.1| beta-lactamase [Expression vector pBS-35S-Ala-Rluc]
gi|28864245|gb|AAO48596.1| beta-lactamase [Expression vector pBS-35S-Rluc-Ala]
gi|28864248|gb|AAO48598.1| beta-lactamase [Expression vector pBS-35S-Ala-YFP]
gi|28864251|gb|AAO48600.1| beta-lactamase [Expression vector pBS-35S-YFP-Ala]
gi|28883210|gb|AAO43181.1| B-lactamase [Monster GFP vector phMGFP]
gi|29150586|gb|AAO63173.1| beta-lactamase [Cloning vector pHRGFPTC]
gi|29150591|gb|AAO63177.1| beta-lactamase [Cloning Vector pHRGFPGUS]
gi|29335745|emb|CAD83082.1| beta lactamase [Transfection vector pBTdest]
gi|29367641|gb|AAO83380.1| beta-lactamase [Expression vector pHA-SP]
gi|29415433|gb|AAO12753.1| beta-lactamase [CRIM plasmid pKD15]
gi|29415714|gb|AAO12757.1| beta-lactamase [CRIM plasmid pKD16]
gi|29423756|gb|AAO73815.1| beta-lactamase [Expression vector pNEX delta R]
gi|29468589|gb|AAO48722.1| beta-lactamase [Cloning vector pVCDcDL3]
gi|29468596|gb|AAO48715.1| beta-lactamase [Cloning vector pVCDcDL1]
gi|29469037|gb|AAO49810.1| beta-lactamase [Expression vector pNEX delta F]
gi|29650762|gb|AAO86501.1| beta lactamase precursor [Cloning vector pQTEV]
gi|29825789|gb|AAO92324.1| beta lactamase [cloning vector pAM2600]
gi|29837144|dbj|BAC75545.1| beta-lactamase [Cloning vector pXcmkn12]
gi|30014057|gb|AAO92241.1| beta-lactamase [Cloning vector pHR3-km]
gi|30014063|gb|AAO92246.1| beta-lactamase [Cloning vector pHR28A10]
gi|30025559|gb|AAP04592.1| beta-lactamase [Cloning vector pHR50]
gi|30039624|gb|AAP06957.1| beta-lactamase [Expression vector pMH]
gi|30424553|gb|AAO24788.1| ampicillin resistance determinant [Shuttle vector pSK5632]
gi|30523398|gb|AAP31915.1| beta-lactamase [Cloning vector pHRE1-km]
gi|30984056|gb|AAP41141.1| beta-lactamase [Cloning vector pHRBar-6]
gi|31415495|gb|AAP44987.1| beta-lactamase [Shuttle vector pNG168]
gi|32140409|gb|AAP69524.1| beta lactamase [Transposition vector RescueMu]
gi|32351113|gb|AAP75626.1| beta-lactamase [Insertional cloning vector pCM168]
gi|32351119|gb|AAP75631.1| beta-lactamase [Insertional expression vector pCM172]
gi|32455183|gb|AAP83302.1| beta-lactamase [Luciferase reporter vector pCBR-Basic]
gi|32455186|gb|AAP83304.1| beta-lactamase [Luciferase reporter vector pCBR-Control]
gi|32455189|gb|AAP83306.1| beta-lactamase [Luciferase reporter vector pCBG68-Basic]
gi|32455192|gb|AAP83308.1| beta-lactamase [Luciferase reporter vector pCBG68-Control]
gi|32455195|gb|AAP83310.1| beta-lactamase [Luciferase reporter vector pCBG99-Basic]
gi|32455199|gb|AAP83313.1| beta-lactamase [Luciferase reporter vector pCBG99-Control]
gi|33149673|gb|AAP96917.1| beta-lactamase [Cloning vector pT3]
gi|33520708|gb|AAQ21189.1| beta-lactamase [Reporter vector pGUSA]
gi|37575399|gb|AAQ93651.1| beta-lactamase [Ribosome display vector pRDV]
gi|37623890|gb|AAQ95605.1| mutant extended-spectrum beta-lactamase precursor [Escherichia
coli]
gi|37654590|gb|AAQ96625.1| beta lactamase [CFP Integration vector pSMUC2+]
gi|37654594|gb|AAQ96628.1| beta lactamase [YFP Integration vector pSMUY2+]
gi|37654598|gb|AAQ96631.1| beta lactamase [Degron tagging vector pSMUG2+]
gi|37654602|gb|AAQ96634.1| beta lactamase [Degron tagging vector pSMRG2+]
gi|37812659|gb|AAR04147.1| beta lactamase [UAS-less reporter vector pMELbeta]
gi|37812665|gb|AAR04151.1| beta lactamase [UAS-less reporter vector YIpMELbeta2]
gi|37812670|gb|AAR04155.1| beta lactamase [UAS-less reporter vector YIpMELbeta]
gi|37812672|gb|AAR04156.1| beta lactamase [UAS-less reporter vector YIpMELalpha]
gi|37812680|gb|AAR04162.1| beta lactamase [UAS-less reporter vector pMELbeta2]
gi|37812683|gb|AAR04164.1| beta lactamase [UAS-less reporter vector YIpMELalpha2]
gi|38155840|gb|AAR12689.1| beta-lactamase [Expression vector pcGlobin 2]
gi|38155843|gb|AAR12691.1| beta-lactamase [Expression vector pcGlobin 2-GST]
gi|38197735|gb|AAR13800.1| beta-lactamase [Cloning vector pMACSiBac]
gi|38231645|gb|AAR14724.1| beta-lactamase [Binary vector pAMPAT-MCS]
gi|38385704|gb|AAR19395.1| ampicillin resistance protein [Cloning vector pTA6]
gi|38524582|dbj|BAD00011.2| beta-lactamase [Cloning vector pGreen]
gi|38565538|gb|AAR24091.1| beta-lactamase [Lentiviral transfer vector pHsCXW]
gi|39636980|gb|AAR29085.1| beta-lactamase [Reporter vector pActXYN]
gi|39636995|gb|AAR29088.1| beta-lactamase [Reporter vector pUbiGUSPlus]
gi|39653984|gb|AAR29592.1| beta-lactamase [Reporter vector pGL3(R2.1)]
gi|39653987|gb|AAR29594.1| beta-lactamase [Reporter vector pGL3(R2.2)]
gi|39653990|gb|AAR29596.1| beta-lactamase [Reporter vector phRG(R2.1)]
gi|39653993|gb|AAR29598.1| beta-lactamase [Reporter vector phRG(R2.2)]
gi|39654023|gb|AAR29600.1| beta-lactamase [Reporter vector pUbiSXR]
gi|39726212|gb|AAR30045.1| beta-lactamase [Integration vector pPyr-Cm]
gi|39726215|gb|AAR30047.1| beta-lactamase [Integration vector pPyr-Kan]
gi|39726218|gb|AAR30049.1| beta-lactamase [Integration vector pGlt-Cm]
gi|39726221|gb|AAR30051.1| beta-lactamase [Integration vector pGlt-Kan]
gi|39726224|gb|AAR30053.1| beta-lactamase [Integration vector pSac-Cm]
gi|39726227|gb|AAR30055.1| beta-lactamase [Integration vector pSac-Kan]
gi|40549339|gb|AAR87725.1| beta-lactamase [Cloning vector pSM47]
gi|40804927|gb|AAR91724.1| b-lactamase [Cloning vector psiSTRIKE Basic]
gi|40804930|gb|AAR91726.1| b-lactamase [Cloning vector psiSTRIKE Hygromycin]
gi|40804932|gb|AAR91727.1| b-lactamase [Cloning vector psiSTRIKE Puromycin]
gi|40804935|gb|AAR91729.1| b-lactamase [Cloning Vector psiSTRIKE Neomycin]
gi|41584255|gb|AAS09816.1| beta-lactamase [Cloning vector piggyBac_PB]
gi|41584258|gb|AAS09818.1| beta-lactamase [Cloning vector piggyBac_RB]
gi|41584261|gb|AAS09820.1| beta-lactamase [Cloning vector piggyBac_WH]
gi|42405464|gb|AAS13538.1| beta-lactamase [Plant binary vector pXCS-HAStrep]
gi|42494367|gb|AAS17530.1| beta-lactamase [Cloning vector pAGA3]
gi|42718121|gb|AAS38483.1| beta-lactamase [RNA interference vector psiCHECK(TM)-1]
gi|42718125|gb|AAS38486.1| beta-lactamase [RNA interference vector psiCHECK(TM)-2]
gi|42733309|dbj|BAD11211.1| ampicillin resistance protein [Expression vector pTip-NH1]
gi|42733316|dbj|BAD11217.1| ampicillin resistance protein [Expression vector pTip-CH1]
gi|42733323|dbj|BAD11223.1| ampicillin resistance protein [Expression vector pTip-NH2]
gi|42733330|dbj|BAD11229.1| ampicillin resistance protein [Expression vector pTip-CH2]
gi|42733337|dbj|BAD11235.1| ampicillin resistance protein [Expression vector pTip-LNH1]
gi|42733344|dbj|BAD11241.1| ampicillin resistance protein [Expression vector pTip-LCH1]
gi|42733351|dbj|BAD11247.1| ampicillin resistance protein [Expression vector pTip-LNH2]
gi|42733358|dbj|BAD11253.1| ampicillin resistance protein [Expression vector pTip-LCH2]
gi|42733365|dbj|BAD11259.1| ampicillin resistance protein [Expression vector pTip-NH1.2]
gi|42733372|dbj|BAD11265.1| ampicillin resistance protein [Expression vector pTip-CH1.2]
gi|42733379|dbj|BAD11271.1| ampicillin resistance protein [Expression vector pTip-NH2.2]
gi|42733386|dbj|BAD11277.1| ampicillin resistance protein [Expression vector pTip-CH2.2]
gi|42733393|dbj|BAD11283.1| ampicillin resistance protein [Expression vector pTip-LNH1.2]
gi|42733400|dbj|BAD11289.1| ampicillin resistance protein [Expression vector pTip-LCH1.2]
gi|42733407|dbj|BAD11295.1| ampicillin resistance protein [Expression vector pTip-LNH2.2]
gi|42733414|dbj|BAD11301.1| ampicillin resistance protein [Expression vector pTip-LCH2.2]
gi|42741001|gb|AAS44579.1| beta lactamase [Gene trapping vector pEU334AN]
gi|42741009|gb|AAS44586.1| beta lactamase [Gene trapping vector pEU334bn]
gi|44894086|gb|AAS48585.1| b-lactamase [Mammalian expression vector pTargeT]
gi|44894183|gb|AAS48632.1| beta-lactamase [Cloning vector pGABI1]
gi|44894186|gb|AAS48634.1| beta-lactamase [Cloning vector pADIS1]
gi|45738209|gb|AAS75869.1| beta-lactamase [Expression vector pHCMV-SARS-S (FFM-1)]
gi|45758346|gb|AAS76483.1| beta-lactamase [Cloning vector pHyVec1]
gi|45861224|gb|AAS78489.1| Amp [Cloning vector pZero++ Amp]
gi|45861231|gb|AAS78494.1| Amp [Cloning vector pPRCG]
gi|45861237|gb|AAS78499.1| Amp [Cloning vector pTCCR]
gi|45861244|gb|AAS78505.1| Amp [Cloning vector pTCCR-Auto]
gi|46310186|gb|AAS87367.1| beta-lactamase [Cloning vector pHyVec2]
gi|46850196|gb|AAT02531.1| beta-lactamase [Cloning vector pUC-gfp-neo]
gi|46850473|gb|AAT02645.1| beta-lactamase [Cloning vector pHyVec3]
gi|47027944|gb|AAT08986.1| beta-lactamase [FRT source vector pFRT2]
gi|47027947|gb|AAT08988.1| beta-lactamase [Gentamycin resistance FRT vector pFGM1]
gi|47027950|gb|AAT08990.1| beta-lactamase [Chloramphenicol resistance FRT vector pFCM1]
gi|47027953|gb|AAT08992.1| beta-lactamase [Kanamycin resistance FRT vector pFKM1]
gi|47027960|gb|AAT08998.1| beta-lactamase [Flp expression vector pFLP3]
gi|47078188|gb|AAT09788.1| beta-lactamase [Baculovirus expression vector pFastBac1-HM]
gi|47132184|gb|AAT11763.1| beta-lactamase [Cloning vector pUC18-mini-Tn7]
gi|47132186|gb|AAT11764.1| beta-lactamase [Cloning vector pUC18-mini-Tn7T]
gi|47132188|gb|AAT11765.1| beta-lactamase [Cloning vector pUC18-R6K-mini-Tn7T]
gi|47132190|gb|AAT11766.1| beta-lactamase [Cloning vector pUC18Pv-mini-Tn7T]
gi|47132192|gb|AAT11767.1| beta-lactamase [Cloning vector pUC18T-mini-Tn7T]
gi|47132195|gb|AAT11769.1| beta-lactamase [Cloning vector pUC18-mini-Tn7T-Gm]
gi|47132198|gb|AAT11771.1| beta-lactamase [Cloning vector pUC18T-mini-Tn7T-Gm]
gi|47132202|gb|AAT11774.1| beta-lactamase [Cloning vector pUC18-mini-Tn7T-Gm-lacZ]
gi|47132206|gb|AAT11777.1| beta-lactamase [Cloning and expression vector pUC18-mini-Tn7T-LAC]
gi|47174898|gb|AAT12433.1| beta-lactamase [Cloning vector pWormgate2]
gi|47524498|gb|AAT34981.1| beta-lactamase [Expression vector pMF272]
gi|47524501|gb|AAT34983.1| beta-lactamase [Expression vector pMF280]
gi|47524504|gb|AAT34985.1| beta-lactamase [Expression vector pMF309]
gi|47563664|dbj|BAD20287.1| ampicillin resistance protein [Expression vector pCop-H1]
gi|47563667|dbj|BAD20289.1| ampicillin resistance protein [Expression vector pCop-H2]
gi|47563670|dbj|BAD20291.1| ampicillin resistance protein [Expression vector pCop-F1]
gi|47563673|dbj|BAD20293.1| ampicillin resistance protein [Expression vector pCop-F2]
gi|48237780|gb|AAT40741.1| beta-lactamase [Phage display vector pTDisp]
gi|48237783|gb|AAT40743.1| beta-lactamase [Phage display vector pTScDisp]
gi|48475419|gb|AAT44339.1| ampicillin resistance protein [Shuttle vector pFNLTP1]
gi|48475426|gb|AAT44345.1| ampicillin resistance protein [Temperature-sensitive shuttle vector
pFNLTP9]
gi|49779994|gb|AAT68455.1| beta-lactamase [psiSTRIKE hMGFP vector]
gi|51090248|dbj|BAD35134.1| beta-lactamase [Expression vector pColdI]
gi|51090251|dbj|BAD35136.1| beta-lactamase [Expression vector pColdII]
gi|51090254|dbj|BAD35138.1| beta-lactamase [Expression vector pColdIII]
gi|51090257|dbj|BAD35140.1| beta-lactamase [Expression vector pColdIV]
gi|51493752|gb|AAU04864.1| beta-lactamase [Mariner transposase delivery vector pFA545]
gi|51534179|emb|CAH18716.1| beta-lactamase [Cloning vector pUCTV2]
gi|51890424|dbj|BAD42597.1| ampicillin resistance protein [Expression vector pTip-QC1]
gi|51890431|dbj|BAD42603.1| ampicillin resistance protein [Expression vector pTip-QC2]
gi|51890438|dbj|BAD42609.1| ampicillin resistance protein [Expression vector pTip-QT1]
gi|51890445|dbj|BAD42615.1| ampicillin resistance protein [Expression vector pTip-QT2]
gi|51890452|dbj|BAD42621.1| ampicillin resistance protein [Expression vector pTip-RC1]
gi|51890458|dbj|BAD42626.1| ampicillin resistance protein [Expression vector pTip-RC2]
gi|51890464|dbj|BAD42631.1| ampicillin resistance protein [Expression vector pTip-RT1]
gi|51890470|dbj|BAD42636.1| ampicillin resistance protein [Expression vector pTip-RT2]
gi|51890474|dbj|BAD42639.1| ampicillin resistance protein [Expression vector pNit-QC1]
gi|51890479|dbj|BAD42643.1| ampicillin resistance protein [Expression vector pNit-QC2]
gi|51890484|dbj|BAD42647.1| ampicillin resistance protein [Expression vector pNit-QT1]
gi|51890489|dbj|BAD42651.1| ampicillin resistance protein [Expression vector pNit-QT2]
gi|51890494|dbj|BAD42655.1| ampicillin resistance protein [Expression vector pNit-RC1]
gi|51890498|dbj|BAD42658.1| ampicillin resistance protein [Expression vector pNit-RC2]
gi|51890502|dbj|BAD42661.1| ampicillin resistance protein [Expression vector pNit-RT1]
gi|51890506|dbj|BAD42664.1| ampicillin resistance protein [Expression vector pNit-RT2]
gi|51989435|gb|AAU21232.1| beta-lactamase [Plant expression vector pPILY]
gi|51989437|gb|AAU21233.1| beta-lactamase [Plant expression vector pPESiTc]
gi|51989439|gb|AAU21234.1| beta-lactamase [Plant expression vector pPESiTb]
gi|51989441|gb|AAU21235.1| beta-lactamase [Plant expression vector pPESiTa]
gi|51989443|gb|AAU21236.1| beta-lactamase [Plant expression vector pMESHI]
gi|51989445|gb|AAU21237.1| beta-lactamase [Plant expression vector pMENCHU]
gi|51989447|gb|AAU21238.1| beta-lactamase [Plant expression vector pLOLA]
gi|51989449|gb|AAU21239.1| beta-lactamase [Plant expression vector pGIGI]
gi|52354840|gb|AAU44622.1| beta-lactamase [Cloning vector pJK95]
gi|53791213|dbj|BAD52432.1| beta-lactamase [Cloning vector pKA1U5]
gi|53791215|dbj|BAD52433.1| beta-lactamase [Cloning vector pGCAP1]
gi|53829087|gb|AAU94550.1| beta-lactamase [pGeneClip Basic cloning vector]
gi|53829089|gb|AAU94551.1| beta-lactamase [pGeneClip hMGFP Vector]
gi|53829092|gb|AAU94553.1| beta-lactamase [pGeneClip Hygromycin Vector]
gi|53829095|gb|AAU94555.1| beta-lactamase [pGeneClip Neomycin Vector]
gi|53829098|gb|AAU94557.1| beta-lactamase [pGeneClip Puromycin Vector]
gi|53829616|gb|AAU94687.1| beta-lactamase [Cloning vector pUC18-mini-Tn7-Gm]
gi|53829621|gb|AAU94691.1| beta lactamase [Cloning vector pUC18-mini-Tn7-LACM15]
gi|53829624|gb|AAU94693.1| beta lactamase [Cloning vector pUC18R6K-mini-Tn7T-Km]
gi|54033266|emb|CAH60311.1| betalactamase TEM-116 [Escherichia coli]
gi|54033268|emb|CAH60312.1| betalactamase TEM-116 [Escherichia coli]
gi|54033270|emb|CAH60313.1| betalactamase TEM-116 [Escherichia coli]
gi|54043008|gb|AAV28496.1| beta lactamase [Cloning vector pUC18-mini-Tn7T-Gm-Gateway]
gi|54043011|gb|AAV28498.1| beta lactamase [Cloning vector pUC18-mini-Tn7T-Tp]
gi|54043016|gb|AAV28502.1| beta lactamase [Cloning vector pUC18-mini-Tn7T-Tp-Gateway]
gi|55535620|gb|AAV52870.1| synthetic beta-lactamase [Firefly luciferase reporter vector
pGL4.10[luc2]]
gi|55535623|gb|AAV52872.1| synthetic beta-lactamase [Firefly luciferase reporter vector
pGL4.11[luc2P]]
gi|55535626|gb|AAV52874.1| synthetic beta-lactamase [Firefly luciferase reporter vector
pGL4.12[luc2CP]]
gi|55535629|gb|AAV52876.1| synthetic beta-lactamase [Firefly luciferase reporter vector
pGL4.13[luc2/SV40]]
gi|55535632|gb|AAV52878.1| synthetic beta-lactamase [Renilla luciferase reporter vector
pGL4.70[hRluc]]
gi|55535635|gb|AAV52880.1| synthetic beta-lactamase [Renilla luciferase reporter vector
pGL4.71[hRlucP]]
gi|55535638|gb|AAV52882.1| synthetic beta-lactamase [Renilla luciferase reporter vector
pGL4.72[hRlucCP]]
gi|55535641|gb|AAV52884.1| synthetic beta-lactamase [Renilla luciferase reporter vector
pGL4.73[hRluc/SV40]]
gi|55535644|gb|AAV52886.1| synthetic beta-lactamase [Renilla luciferase reporter vector
pGL4.74[hRluc/TK]]
gi|55535647|gb|AAV52888.1| synthetic beta-lactamase [Renilla luciferase reporter vector
pGL4.75[hRluc/CMV]]
gi|55669169|gb|AAV54523.1| beta-lactamase [Phagemid vector pMID21]
gi|56089684|gb|AAV70826.1| beta-lactamase [Expression vector pHT2]
gi|56119175|gb|AAV73951.1| beta-lactamase [siRNA vector pAAV9(5)-CMV-EGFP-CytB-AS-ohneBgl]
gi|56119178|gb|AAV73953.1| beta-lactamase [siRNA vector pSUPER-CMV-DsRed2N1-CytB-AS]
gi|56119181|gb|AAV73955.1| beta-lactamase [siRNA vector pSUPER-CMV-EGFP-CytB-AS]
gi|56119184|gb|AAV73957.1| beta-lactamase [siRNA vector pSUPER-CMV-EGFP-CytB-AS-ohneBgl]
gi|56119187|gb|AAV73959.1| beta-lactamase [siRNA vector pSUPER-hSyn-DsRed2N1-CytB-AS]
gi|56119190|gb|AAV73961.1| beta-lactamase [siRNA vector pSUPER-hSyn-EGFP-CytB-AS]
gi|56119192|gb|AAV73962.1| beta-lactamase [siRNA vector pAAV9(5)-CMV-DsRed2N1-CytB-AS-ohneNot]
gi|56119196|gb|AAV73965.1| beta-lactamase [siRNA vector pAAV9(5)-CMV-EGFP-CytB-AS-ohneBgl]
gi|56119199|gb|AAV73967.1| beta-lactamase [siRNA vector pAAV9(5)-CMV-EGFP-CytB-AS-ohneNot]
gi|56119201|gb|AAV73968.1| beta-lactamase [siRNA vector
pAAV9(5)-hSyn-DsRed2N1-CytB-AS-ohneNot]
gi|56119205|gb|AAV73971.1| beta-lactamase [siRNA vector pAAV9(5)-hSyn-DsRed2N1-EGFP-siRNA]
gi|56406596|gb|AAV87647.1| beta-lactamase [Flexi Vector pF1A T7]
gi|56406603|gb|AAV87652.1| beta-lactamase [Flexi Vector pFN2A (GST)]
gi|56406610|gb|AAV87657.1| beta-lactamase [Flexi Vector pF4A (CMV)]
gi|56541549|dbj|BAD77830.1| beta-lactamase [Expression vector pTD1(TM)]
gi|56553542|gb|AAV97891.1| bla [Cloning vector pSAT1-EGFP-C1]
gi|56553544|gb|AAV97892.1| bla [Hygromycin resistance plant expression vector pSAT1-hpt]
gi|56553547|gb|AAV97894.1| bla [Cloning vector pSAT2-EGFP-C1]
gi|56553549|gb|AAV97895.1| bla [Cloning vector pSAT3-EGFP-C1]
gi|56553551|gb|AAV97896.1| bla [Cloning vector pSAT4-EGFP-C1]
gi|56553553|gb|AAV97897.1| bla [Cloning vector pSAT5-EGFP-C1]
gi|56553555|gb|AAV97898.1| bla [Cloning vector pSAT6-Citrine-N1]
gi|56553561|gb|AAV97903.1| bla [Gateway destination plasmid pSAT6-DEST-EGFP-N1]
gi|56553563|gb|AAV97904.1| bla [Kanamycin resistance plant expression vector pSAT4-nptII]
gi|56553568|gb|AAV97908.1| bla [Gateway destination plasmid pSAT6-DEST-EGFP-C1]
gi|56553570|gb|AAV97909.1| bla [Cloning vector pSAT6-DsRed2-N1]
gi|56553573|gb|AAV97911.1| bla [Cloning vector pSAT6-ECFP-C1]
gi|56553575|gb|AAV97912.1| bla [Cloning vector pSAT6-DsRed2-C1]
gi|56553577|gb|AAV97913.1| bla [Phosphinothricin resistance plant expression vector pSAT6-bar]
gi|56553580|gb|AAV97915.1| bla [Cloning vector pSAT6-EGFP-C1]
gi|56553582|gb|AAV97916.1| bla [Cloning vector pSAT6-EYFP-N1]
gi|56553587|gb|AAV97920.1| bla [Gateway destination plasmid pSAT6-NP-DEST-EGFP]
gi|56553589|gb|AAV97921.1| bla [Cloning vector pSAT6-EYFP-C1]
gi|56553591|gb|AAV97922.1| bla [Cloning vector pSAT6-ECFP-N1]
gi|56553594|gb|AAV97924.1| bla [Cloning vector pSAT6-EGFP-N1]
gi|56553597|gb|AAV97926.1| bla [Cloning vector pSAT6-MCS]
gi|56553599|gb|AAV97927.1| bla [Cloning vector pSAT7-EGFP-C1]
gi|56553601|gb|AAV97928.1| bla [Cloning vector pSAT6-Citrine-C1]
gi|56912127|emb|CAI39221.1| beta-lactamase [Transconjugation plasmid pEMOC2]
gi|56912130|emb|CAI39223.1| beta-lactamase [Transconjugation plasmid pBMK1]
gi|57337321|emb|CAH65832.1| beta lactamase [Cloning vector pASK88-huHRS3-VH-EP3/1]
gi|57790544|gb|AAW56199.1| beta-lactamase [Tetracycline resistance FRT vector pFTC1]
gi|57790547|gb|AAW56201.1| beta-lactamase [Trimethoprim resistance FRT vector pFTP1]
gi|57790550|gb|AAW56203.1| beta-lactamase [Cloning vector pUC18T-mini-Tn7T-Gm-REP]
gi|57790552|gb|AAW56204.1| beta-lactamase [Mini-Tn7 delivery vector pUC18R6KT-mini-Tn7T]
gi|57864189|emb|CAH59707.1| ampicillin resistance [Cloning vector pFlexible]
gi|58201867|gb|AAW66983.1| synthetic beta-lactamase [Luciferase reporter vector
pGL4.14[luc2/Hygro]]
gi|58201872|gb|AAW66987.1| synthetic beta-lactamase [Luciferase reporter vector
pGL4.15[luc2P/Hygro]]
gi|58201876|gb|AAW66990.1| synthetic beta-lactamase [Luciferase reporter vector
pGL4.16[luc2CP/Hygro]]
gi|58201880|gb|AAW66993.1| synthetic beta-lactamase [Luciferase reporter vector
pGL4.76[hRluc/Hygro]]
gi|58201884|gb|AAW66996.1| synthetic beta-lactamase [Luciferase reporter vector
pGL4.77[hRlucP/Hygro]]
gi|58201888|gb|AAW66999.1| synthetic beta-lactamase [Luciferase reporter vector
pGL4.78[hRlucCP/Hygro]]
gi|58533133|gb|AAW78922.1| beta-lactamase [Cloning and suicide delivery vector pUC18R6KT]
gi|58533139|gb|AAW78927.1| beta-lactamase [T7 transposase expression vector pTNS2]
gi|58533142|gb|AAW78929.1| beta-lactamase [Cloning and Tn7 delivery vector
pUC18R6K-mini-Tn7T-Km]
gi|58843568|gb|AAW82912.1| mutant extended-spectrum beta-lactamase [Klebsiella pneumoniae]
gi|59894878|gb|AAX11248.1| bla [Gene deletion vector pEX100Tlink]
gi|59894880|gb|AAX11249.1| bla [Gene deletion vector pUCGM-lox]
gi|60101688|gb|AAX13968.1| beta-lactamase [Dual fluorescent protein cloning vector pGRFP]
gi|60115916|gb|AAX14066.1| beta-lactamase [Reporter vector pUS23]
gi|60547283|gb|AAX23611.1| beta-lactamase [Cloning vector pEX18ApGW]
gi|60651291|gb|AAX31733.1| beta lactamase [Reporter shuttle vector pSUN202]
gi|60651294|gb|AAX31735.1| beta lactamase [Cloning shuttle vector pSCR202]
gi|62178046|gb|AAX73186.1| beta-lactamase [Transcriptional fusion vector
pUC18-mini-Tn7T-Gm-lux]
gi|62275798|gb|AAX78236.1| beta-lactamase [Flexi Vector pF3A WG (BYDV)]
gi|62467027|gb|AAX83681.1| beta-lactamase [Expression vector pKLAC1]
gi|62736901|gb|AAX97735.1| beta-lactamase [Cloning vector pBS 35S Rluc-attR]
gi|62736906|gb|AAX97739.1| beta-lactamase [Cloning vector pBS 35S YFP-attR]
gi|62736911|gb|AAX97743.1| beta-lactamase [Cloning vector pBS 35S hRluc-attR]
gi|62736916|gb|AAX97747.1| beta-lactamase [Cloning vector pBS 35S attR-Rluc]
gi|62736921|gb|AAX97751.1| beta-lactamase [Cloning vector pBS 35S attR-hRluc]
gi|62736926|gb|AAX97755.1| beta-lactamase [Cloning vector pBS 35S attR-YFP]
gi|62945930|gb|AAY22206.1| beta-lactamase [unidentified cloning vector]
gi|62946660|gb|AAY22441.1| beta-lactamase [Baculovirus expression vector pUltraBac-1]
gi|63002504|gb|AAY25357.1| Bla [Cloning vector pSAT7-actP-MCS-agsT]
gi|63002507|gb|AAY25359.1| Bla [Cloning vector pSAT1A-ocsAocsP-bar-ocsT]
gi|63002510|gb|AAY25361.1| Bla [Cloning vector pSAT1A-ocsAocsP-hpt-ocsT]
gi|63002512|gb|AAY25362.1| Bla [Cloning vector pSAT1A-ocsAocsP-MCS-ocsT]
gi|63002515|gb|AAY25364.1| Bla [Cloning vector pSAT1A-ocsAocsP-nptII-ocsT]
gi|63002517|gb|AAY25365.1| Bla [Cloning vector pSAT1-ocsAocsP-MCS-ocsT]
gi|63002519|gb|AAY25366.1| Bla [Cloning vector pSAT2A-nosP-MCS-nosT]
gi|63002521|gb|AAY25367.1| Bla [Cloning vector pSAT2-nosP-MCS-nosT]
gi|63002523|gb|AAY25368.1| Bla [Cloning vector pSAT3A-masP-MCS-masT]
gi|63002525|gb|AAY25369.1| Bla [Cloning vector pSAT3-masP-MCS-masT]
gi|63002527|gb|AAY25370.1| Bla [Cloning vector pSAT4-35SP-MCS-35ST]
gi|63002529|gb|AAY25371.1| Bla [Cloning vector pSAT4A-35SP-MCS-35ST]
gi|63002532|gb|AAY25373.1| Bla [Cloning vector pSAT6A-DsRed2-N1]
gi|63002535|gb|AAY25375.1| Bla [Cloning vector pSAT6A-ECFP-N1]
gi|63002538|gb|AAY25377.1| Bla [Cloning vector pSAT6A-EGFP-N1]
gi|63002540|gb|AAY25378.1| Bla [Cloning vector pSAT6A-rbcP-MCS-rbcT]
gi|63002543|gb|AAY25380.1| Bla [Cloning vector pSAT6A-RFP-N1]
gi|63002545|gb|AAY25381.1| Bla [Cloning vector pSAT6-rbcP-MCS-rbcT]
gi|63002548|gb|AAY25383.1| Bla [Cloning vector pSAT6-RFP-C1]
gi|63002551|gb|AAY25385.1| Bla [Cloning vector pSAT6-RFP-N1]
gi|63002553|gb|AAY25386.1| Bla [Cloning vector pSAT7A-actP-MCS-agsT]
gi|66276900|gb|AAY44381.1| AP(R) [Yeast expression vector p426GALL]
gi|66472065|dbj|BAD98927.1| beta-lactamase [Expression vector pColdTF]
gi|66473437|gb|AAY46370.1| beta-lactamase [Cloning vector pMAB143]
gi|66815023|gb|AAY56737.1| beta lactamase [Cloning vector pMBL]
gi|67089185|gb|AAY66997.1| beta-lactamase [Cloning vector p713-1555]
gi|70610371|gb|AAZ05447.1| beta-lactamase [Cloning vector pUC19-35S-FLAG-RBS]
gi|70672666|gb|AAZ06566.1| beta-lactamase [Microarray RNA control template pNIAysic-1]
gi|70672668|gb|AAZ06567.1| beta-lactamase [Microarray RNA control template pNIAysic-2]
gi|70672670|gb|AAZ06568.1| beta-lactamase [Microarray spike-in control plasmid pNIAysic-3]
gi|70672672|gb|AAZ06569.1| beta-lactamase [Microarray spike-in control plasmid pNIAysic-4]
gi|70672674|gb|AAZ06570.1| beta-lactamase [Microarray spike-in control plasmid pNIAysic-5]
gi|70672676|gb|AAZ06571.1| beta-lactamase [Microarray spike-in control plasmid pNIAysic-6]
gi|70672678|gb|AAZ06572.1| beta-lactamase [Microarray spike-in control plasmid pNIAysic-7]
gi|71493344|gb|AAZ32776.1| beta-lactamase [Apramycin resistance FRT vector pFAP1]
gi|71493347|gb|AAZ32778.1| beta-lactamase [Zeocin resistance FRT vector pFZE1]
gi|73672810|gb|AAZ80483.1| beta-lactamase [Cloning vector pUC18R6K-mini-Tn7T-Gm]
gi|73697469|gb|AAZ81407.1| beta-lactamase [pFN6A (HQ) Flexi Vector]
gi|73697475|gb|AAZ81411.1| beta-lactamase [pFC7A (HQ) Flexi Vector]
gi|73697481|gb|AAZ81415.1| beta-lactamase [Cloning vector pFC8A]
gi|76364281|gb|ABA41655.1| beta-lactamase [Firefly luciferase reporter vector
pGL4.17[luc2/Neo]]
gi|76364285|gb|ABA41658.1| beta-lactamase [Firefly luciferase reporter vector
pGL4.18[luc2P/Neo]]
gi|76364289|gb|ABA41661.1| beta-lactamase [Firefly luciferase reporter vector
pGL4.19[luc2CP/Neo]]
gi|76364293|gb|ABA41664.1| beta-lactamase [Firefly luciferase reporter vector
pGL4.20[luc2/Puro]]
gi|76364297|gb|ABA41667.1| beta-lactamase [Firefly luciferase reporter vector
pGL4.21[luc2P/Puro]]
gi|76364301|gb|ABA41670.1| beta-lactamase [Firefly luciferase reporter vector
pGL4.22[luc2CP/Puro]]
gi|76364305|gb|ABA41673.1| beta-lactamase [Renilla luciferase reporter vector
pGL4.79[hRluc/Neo]]
gi|76364309|gb|ABA41676.1| beta-lactamase [Renilla luciferase reporter vector
pGL4.80[hRlucP/Neo]]
gi|76364313|gb|ABA41679.1| beta-lactamase [Renilla luciferase reporter vector
pGL4.81[hRlucCP/Neo]]
gi|76364317|gb|ABA41682.1| beta-lactamase [Renilla luciferase reporter vector
pGL4.82[hRluc/Puro]]
gi|76364321|gb|ABA41685.1| beta-lactamase [Renilla luciferase reporter vector
pGL4.83[hRlucP/Puro]]
gi|76364325|gb|ABA41688.1| beta-lactamase [Renilla luciferase reporter vector
pGL4.84[hRlucCP/Puro]]
gi|76496268|gb|ABA43651.1| beta-lactamase [Saccharomyces cerevisiae expression vector p426GPD]
gi|76667909|dbj|BAE45351.1| beta lactamase [Cloning vector p3216PCbeta]
gi|76799968|gb|ABA55626.1| beta lactamase [synthetic construct]
gi|77745601|gb|ABB02678.1| bla [Bi-molecular fluorescence complementation vector
pSAT4-nEYFP-C1]
gi|77745603|gb|ABB02679.1| bla [Bi-molecular fluorescence complementation vector
pSAT1-nEYFP-C1]
gi|77745605|gb|ABB02680.1| bla [Bi-molecular fluorescence complementation vector
pSAT1-cEYFP-C1-B]
gi|77745607|gb|ABB02681.1| bla [Bi-molecular fluorescence complementation vector
pSAT4-cEYFP-C1-B]
gi|77745609|gb|ABB02682.1| bla [Bi-molecular fluorescence complementation vector
pSAT1A-cEYFP-N1]
gi|77745611|gb|ABB02683.1| bla [Bi-molecular fluorescence complementation vector
pSAT1A-nEYFP-N1]
gi|77745613|gb|ABB02684.1| bla [Bi-molecular fluorescence complementation vector
pSAT1-cEYFP-N1]
gi|77745615|gb|ABB02685.1| bla [Bi-molecular fluorescence complementation vector
pSAT1-nEYFP-N1]
gi|77745617|gb|ABB02686.1| bla [Bi-molecular fluorescence complementation vector
pSAT4A-cEYFP-N1]
gi|77745619|gb|ABB02687.1| bla [Bi-molecular fluorescence complementation vector
pSAT4A-nEYFP-N1]
gi|77745621|gb|ABB02688.1| bla [Bi-molecular fluorescence complementation vector
pSAT4-cEYFP-N1]
gi|77745623|gb|ABB02689.1| bla [Bi-molecular fluorescence complementation vector
pSAT4-nEYFP-N1]
gi|77819884|gb|ABB04076.1| AmpR [Shuttle vector pMQ51]
gi|77819890|gb|ABB04081.1| AmpR [Shuttle vector pMQ52]
gi|77994165|gb|ABB13468.1| beta-lactamase [Mini-Tn7 delivery vector
pUC18R6K-mini-Tn7T-Gm-PlacPflaAgfpmut2]
gi|77999627|gb|ABB17063.1| beta lactamase [Moss transformation vector pMBL5]
gi|77999630|gb|ABB17065.1| beta lactamase [Moss transformation vector pMBL6]
gi|77999633|gb|ABB17067.1| beta lactamase [Moss gene targeting vector pMBL6attR]
gi|78214571|gb|ABB36476.1| AmpR [Saccharomyces cerevisiae expression vector p423GALL]
gi|81175361|gb|ABB59018.1| beta-lactamase [Himar1-delivery and mutagenesis vector pFNLTP16 H3]
gi|81175367|gb|ABB59023.1| Bla [Francisella complementation plasmid pFNLTP23]
gi|81238110|gb|ABB59938.1| Bla [Expression vector pMF331]
gi|81238113|gb|ABB59940.1| Bla [Expression vector pMF332]
gi|81238116|gb|ABB59942.1| Bla [Expression vector pMF334]
gi|81238198|gb|ABB59949.1| beta-lactamase [Gene trapping Ds/T-DNA vector pUR224NA]
gi|81238205|gb|ABB59955.1| beta-lactamase [Gene trapping Ds/T-DNA vector pUR224NB]
gi|81238212|gb|ABB59961.1| beta-lactamase [Gene trapping Ds/T-DNA vector pNU393A1]
gi|81238219|gb|ABB59967.1| beta-lactamase [Gene trapping Ds/T-DNA vector pNU393B2]
gi|81238226|gb|ABB59973.1| beta-lactamase [Gene trapping Ds/T-DNA vector pNU435]
gi|81345495|gb|ABB71437.1| beta-lactamase [Cloning vector pBBR-IBA3plus]
gi|82548123|gb|ABB82601.1| AmpR [Yeast centromeric expression vector p416GPD]
gi|82569472|gb|ABB83372.1| AmpR [Expression Vector p413-SSRE]
gi|82569475|gb|ABB83374.1| AmpR [Expression Vector p413-TR-SSRE]
gi|82569478|gb|ABB83376.1| AmpR [Expression vector p413-PGAL1]
gi|82569481|gb|ABB83378.1| AmpR [Expression vector p413-SSRE-GFP]
gi|82569485|gb|ABB83381.1| AmpR [Expression vector p413-TR-SSRE-GFP]
gi|82569489|gb|ABB83384.1| AmpR [Quorum Sensing Vector p413-SSRE-AtIPT4]
gi|82569493|gb|ABB83387.1| AmpR [Quorum Sensing Vector p413-TR-SSRE-AtIPT4]
gi|82569497|gb|ABB83390.1| AmpR [Quorum Sensing Vector p413-PGAL1-AtIPT4]
gi|82569502|gb|ABB83394.1| AmpR [Receiver Vector p415-CYC1-CRE1a-SSRE-GFP]
gi|82569507|gb|ABB83398.1| AmpR [Receiver Vector p415-CYC1-CRE1a-TR-SSRE-GFP]
gi|82569511|gb|ABB83401.1| AmpR [Expression Vector p415-CYC1-DsRed-Exp]
gi|82569515|gb|ABB83404.1| AmpR [Expression Vector p415-TEF-DsRed-Exp]
gi|82569520|gb|ABB83408.1| AmpR [Sender Vector p416-GAL1-AtIPT4]
gi|83033221|gb|ABB97072.1| beta-lactamase [Mini-Tn7 delivery vector pUC18-mini-Tn7T-Gm-lacZ10]
gi|83033225|gb|ABB97075.1| beta-lactamase [Mini-Tn7 delivery vector pUC18-mini-Tn7T-Gm-lacZ20]
gi|83033229|gb|ABB97078.1| beta-lactamase [Mini-Tn7 delivery vector pUC18-mini-Tn7T-Gm-lacZ30]
gi|83281168|dbj|BAE53670.1| beta-lactamase [Cloning vector pDESTR]
gi|83779167|gb|ABC47404.1| beta-lactamase [Positive selection cloning vector pJET1]
gi|85062534|gb|ABC69142.1| beta-lactamase [Cloning vector pHyVec5]
gi|86278337|gb|ABC88421.1| ampicillin resistance marker [Delivery vector pIEF16S]
gi|87080787|dbj|BAE79258.1| beta-lactamase [Expression vector pColdI(SP-4)]
gi|87080790|dbj|BAE79260.1| beta-lactamase [Expression vector pColdII(SP-4)]
gi|87080793|dbj|BAE79262.1| beta-lactamase [Expression vector pColdIII(SP-4)]
gi|87080796|dbj|BAE79264.1| beta-lactamase [Expression vector pColdIV(SP-4)]
gi|87133613|gb|ABD24449.1| Bla [Shuttle expression-secretion vector pP43NMK]
gi|87159693|dbj|BAE79429.1| beta-lactamase [Cloning vector pPL450]
gi|87159696|dbj|BAE79431.1| beta-lactamase [Cloning vector pPL451]
gi|87159699|dbj|BAE79433.1| beta-lactamase [Cloning vector pPL452]
gi|87159702|dbj|BAE79435.1| beta-lactamase [Cloning vector pCL476]
gi|87159705|dbj|BAE79437.1| beta-lactamase [Cloning vector pCL478]
gi|87159708|dbj|BAE79439.1| beta-lactamase [Cloning vector pND706]
gi|87159711|dbj|BAE79441.1| beta-lactamase [Cloning vector pND707]
gi|88173989|gb|ABD39138.1| b-lactamase [Cloning vector pBGGT]
gi|88174978|gb|ABD39513.1| beta-lactamase [Cloning vector pHyVec4]
gi|88687073|emb|CAJ47404.1| beta-lactamase [synthetic construct]
gi|89276252|gb|ABD66476.1| beta-lactamase [Cloning vector pFA6a-HBH-kanMX6]
gi|89276255|gb|ABD66478.1| beta-lactamase [Cloning vector pFA6a-HBH-hphMX4]
gi|89276258|gb|ABD66480.1| beta-lactamase [Cloning vector pFA6a-HBH-TRP1]
gi|89276261|gb|ABD66482.1| beta-lactamase [Cloning vector pFA6a-HTB-kanMX6]
gi|89276264|gb|ABD66484.1| beta-lactamase [Cloning vector pFA6a-HTB-hphMX4]
gi|89276267|gb|ABD66486.1| beta-lactamase [Cloning vector pFA6a-HTB-TRP1]
gi|89276270|gb|ABD66488.1| beta-lactamase [Cloning vector pFA6a-BIO-kanMX6]
gi|89276273|gb|ABD66490.1| beta-lactamase [Cloning vector pFA6a-BIO-hphMX4]
gi|89276276|gb|ABD66492.1| beta-lactamase [Cloning vector pFA6a-BIO-TRP1]
gi|89276279|gb|ABD66494.1| beta-lactamase [Cloning vector pFA6a-RGS18H-kanMX6]
gi|89276282|gb|ABD66496.1| beta-lactamase [Cloning vector pFA6a-RGS18HIS-hphMX4]
gi|89276285|gb|ABD66498.1| beta-lactamase [Cloning vector pFA6a-RGS18H-TRP1]
gi|89276287|gb|ABD66499.1| beta-lactamase [Cloning vector pFA6a-kanMX6-PGAL1-HBH]
gi|89276290|gb|ABD66501.1| beta-lactamase [Cloning vector pFA6a-TRP1-PGAL1-HBH]
gi|89513615|gb|ABD74634.1| beta lactamase [Functional Analysis plasmid pFA-CaURA3]
gi|89513618|gb|ABD74636.1| beta lactamase [Functional Analysis plasmid pFA-CaHIS1]
gi|89513621|gb|ABD74638.1| beta lactamase [Functional Analysis plasmid pFA-CaARG4]
gi|89513624|gb|ABD74640.1| beta lactamase [Functional Analysis plasmid pFA-CaURA3-MAL2prom]
gi|89513627|gb|ABD74642.1| beta lactamase [Functional Analysis plasmid pFA-CaHIS1-MAL2prom]
gi|89513630|gb|ABD74644.1| beta lactamase [Functional Analysis plasmid pFA-CaARG4-MAL2prom]
gi|89513633|gb|ABD74646.1| beta lactamase [Functional Analysis plasmid pFA-CaURA3-MET3prom]
gi|89513636|gb|ABD74648.1| beta lactamase [Functional Analysis plasmid pFA-CaHIS1-MET3prom]
gi|89513639|gb|ABD74650.1| beta lactamase [Functional Analysis plasmid pFA-CaARG4-MET3prom]
gi|89513642|gb|ABD74652.1| beta lactamase [Functional Analysis plasmid pFA-GFP-CaURA3]
gi|89513646|gb|ABD74655.1| beta lactamase [Functional Analysis plasmid pFA-GFP-CaHIS1]
gi|89513648|gb|ABD74656.1| beta lactamase [Functional Analysis plasmid pFA-GFP-CaARG4]
gi|89513651|gb|ABD74658.1| beta lactamase [Functional Analysis Plasmid pFA-CdHIS1]
gi|89513654|gb|ABD74660.1| beta lactamase [Functional Analysis Plasmid pFA-CmLEU2]
gi|89513657|gb|ABD74662.1| beta lactamase [Functional Analysis Plasmid pFA-SAT1]
gi|89513660|gb|ABD74664.1| beta lactamase [Functional Analysis Plasmid pFA-CdHIS1-MAL2prom]
gi|89513663|gb|ABD74666.1| beta lactamase [Functional Analysis Plasmid pFA-CmLEU2-MAL2prom]
gi|89513666|gb|ABD74668.1| beta lactamase [Functional Analysis Plasmid pFA-SAT1-MAL2prom]
gi|89513669|gb|ABD74670.1| beta lactamase [Functional Analysis Plasmid pFA-CaHIS1-AgTEFprom]
gi|89513672|gb|ABD74672.1| beta lactamase [Functional Analysis Plasmid pFA-CdHIS-AgTEFprom]
gi|89513675|gb|ABD74674.1| beta lactamase [Functional Analysis Plasmid pFA-CmLEU2-AgTEFprom]
gi|89513678|gb|ABD74676.1| beta lactamase [Functional Analysis Plasmid pFA-CdHIS1-MET3prom]
gi|89513681|gb|ABD74678.1| beta lactamase [Functional Analysis Plasmid pFA-CmLEU2-MET3prom]
gi|89513684|gb|ABD74680.1| beta lactamase [Functional Analysis Plasmid pFA-SAT1-MET3prom]
gi|89513687|gb|ABD74682.1| beta lactamase [Functional Analysis Plasmid
pFA-CaHIS1-MAL2prom-GFP(GA)6]
gi|89513690|gb|ABD74684.1| beta lactamase [Functional Analysis Plasmid
pFA-CdHIS-AgTEFprom-GFP(GA)6]
gi|89513693|gb|ABD74686.1| beta lactamase [Functional Analysis Plasmid pFA-GFP-CdHIS1]
gi|89513696|gb|ABD74688.1| beta lactamase [Functional Analysis Plasmid pFA-GFP-CmLEU2]
gi|89513699|gb|ABD74690.1| beta lactamase [Functional Analysis Plasmid
pFA-CaHIS1-MAL2prom-6x-His-tag]
gi|90074887|dbj|BAE87123.1| beta-lactamase [Expression vector pUC18VcluxOR]
gi|90074890|dbj|BAE87125.1| beta-lactamase [Expression vector pUC18VcluxOD]
gi|91795126|gb|ABE60867.1| beta-lactmase [Conjugative vector pHW001]
gi|92918408|gb|ABE96682.1| beta-lactamase [shRNA expression vector pSiRPG]
gi|94470453|gb|ABF20537.1| beta-lactamase [Integration vector pBGSC6]
gi|94481125|dbj|BAE93935.1| beta-lactamase [Cloning vector pBARST]
gi|94540633|gb|ABF31012.1| Bla [Delivery vector pIEFBPR]
gi|94958299|gb|ABF47280.1| beta-lactamase [Microarray spiking control vector pSP64bb1sp1]
gi|94958301|gb|ABF47281.1| beta-lactamase [Microarray spiking control vector pSP64bb2sp3]
gi|94958303|gb|ABF47282.1| beta-lactamase [Microarray spiking control vector pSP64bb2sp4]
gi|94958305|gb|ABF47283.1| beta-lactamase [Microarray spiking control vector pSP64bb2sp5]
gi|94963142|gb|ABF48729.1| beta-lactamase [TF expression vector pB1H2]
gi|95102177|gb|ABF51013.1| beta-lactamase [Zea mays]
gi|104716771|gb|ABF74524.1| beta-lactamase [Cloning vector pUC18T-mini-Tn7T-Tp]
gi|104716803|gb|ABF74526.1| beta-lactamase [Cloning vector pUC18T-mini-Tn7T-Zeo]
gi|104716837|gb|ABF74529.1| beta-lactamase [Mini-Tn7 delivery vector
pUC18T-mini-Tn7T-Gm-gfpmut3]
gi|104716873|gb|ABF74532.1| beta-lactamase [Mini-Tn7 delivery vector pUC18T-mini-Tn7T-Gm-ecfp]
gi|104716912|gb|ABF74535.1| beta-lactamase [Mini-Tn7 delivery vector pUC18T-mini-Tn7T-Gm-eyfp]
gi|104716947|gb|ABF74538.1| beta-lactamase [Mini-Tn7 delivery vector
pUC18T-mini-Tn7T-Gm-DsRedExpress]
gi|104716984|gb|ABF74541.1| beta-lactamase [Mini-Tn7 delivery vector
pUC18T-mini-Tn7T-Tp-gfpmut3]
gi|104717022|gb|ABF74544.1| beta-lactamase [Mini-Tn7 delivery vector pUC18T-mini-Tn7T-Tp-ecfp]
gi|104717072|gb|ABF74547.1| beta-lactamase [Mini-Tn7 delivery vector pUC18T-mini-Tn7T-Tp-eyfp]
gi|104717111|gb|ABF74550.1| beta-lactamase [Mini-Tn7 delivery vector
pUC18T-mini-Tn7T-Tp-DsRedExpress]
gi|104717160|gb|ABF74553.1| beta-lactamase [Mini-Tn7 delivery vector
pUC18T-mini-Tn7T-Zeo-gfpmut3]
gi|104717200|gb|ABF74556.1| beta-lactamase [Mini-Tn7 delivery vector pUC18T-mini-Tn7T-Zeo-ecfp]
gi|104717238|gb|ABF74559.1| beta-lactamase [Mini-Tn7 delivery vector pUC18T-mini-Tn7T-Zeo-eyfp]
gi|104717278|gb|ABF74562.1| beta-lactamase [Mini-Tn7 delivery vector
pUC18T-mini-Tn7T-Zeo-DsRedExpress]
gi|104744459|gb|ABF74575.1| beta-lactamase [Mammalian expression vector pNBio]
gi|104744494|gb|ABF74578.1| beta-lactamase [Mammalian expression vector pCBio]
gi|108671047|gb|ABF93442.1| beta-lactamase [Expression vector CS105]
gi|108671049|gb|ABF93443.1| beta-lactamase [Expression vector CS107]
gi|108671051|gb|ABF93444.1| beta-lactamase [Expression vector CS108]
gi|108671053|gb|ABF93445.1| beta-lactamase [Expression vector CS111]
gi|108741853|gb|ABG01696.1| beta-lactamase [Flexi Vector pFN10A (ACT)]
gi|108741858|gb|ABG01700.1| beta-lactamase [Flexi Vector pFN11A (BIND)]
gi|108741862|gb|ABG01703.1| synthetic beta-lactamase [Cloning vector pGL4.31 (luc2P/GAL4
UAS/Hygro)]
gi|108947433|gb|ABG24166.1| ampicillin resistance protein [Cloning vector pDNR-Dual]
gi|109159326|gb|ABG26756.1| beta-lactamase [Cloning vector pPCR-Script Amp SK(+)]
gi|109290444|gb|ABG29428.1| beta-lactamase [Reporter vector pBNP1]
gi|109290447|gb|ABG29430.1| ampicillin resistance protein [cloning vector pPlat-Pds-Mod4.1]
gi|109900617|gb|ABG47803.1| beta-lactamase [Flexi vector pF5A CMV-neo]
gi|110227284|gb|ABG56582.1| Bla [Shuttle vector pMQ78]
gi|110227303|gb|ABG56598.1| Bla [Shuttle vector pMQ95]
gi|110433180|gb|ABG74348.1| beta-lactamase [cloning vector pExpress-1]
gi|111054491|gb|ABH04321.1| beta-lactamase [Transgenesis vector I-SceI-pBSII-SK+]
gi|111146844|gb|ABH07370.1| beta-lactamase [Cloning vector pBlueScript-FL]
gi|112146877|gb|ABI13484.1| beta-lactamase [PCR cloning vector pAnti-Kit-Barnase]
gi|112789892|gb|ABI21733.1| beta-lactamase [Cloning vector pControl-1]
gi|113473485|gb|ABI35979.1| beta-lactamase [Cloning vector pYESW29']
gi|114054348|gb|ABI49757.1| beta-lactamase [CMV hRluc-neo Flexi Vector pF9A]
gi|114329296|gb|ABI64164.1| Amp [Keratinocyte expression vector phPK14H]
gi|114386390|gb|ABI74452.1| beta-lactamase [Expression vector pcDNA3-hFIX]
gi|114846018|gb|ABI82030.1| beta-lactamase [Cloning vector pABC3]
gi|114846021|gb|ABI82032.1| beta-lactamase [Cloning vector pABC3-His]
gi|114846024|gb|ABI82034.1| beta-lactamase [Cloning vector pABC3-Cys]
gi|114846027|gb|ABI82036.1| beta-lactamase [Cloning vector pABC3-HisCys]
gi|114846318|gb|ABI82038.1| beta-lactamase [Cloning vector pABC3-FlagHis]
gi|114846322|gb|ABI82041.1| beta-lactamase [Cloning vector pABC3-Gfp]
gi|114846326|gb|ABI82044.1| beta-lactamase [Cloning vector pABC3-mRfp]
gi|114846329|gb|ABI82046.1| beta-lactamase [Cloning vector pABC5']
gi|114846332|gb|ABI82048.1| beta-lactamase [Cloning vector pABC5'-His]
gi|114846335|gb|ABI82050.1| beta-lactamase [Cloning vector pABC5'-Cys]
gi|114846640|gb|ABI82052.1| beta-lactamase [Cloning vector pABC5'-HisCys]
gi|114846643|gb|ABI82054.1| beta-lactamase [Cloning vector pABC5'-FlagHis]
gi|114846647|gb|ABI82057.1| beta-lactamase [Cloning vector pABC5'-Gfp]
gi|114846651|gb|ABI82060.1| beta-lactamase [Cloning vector pABC5'-mRfp1]
gi|114846654|gb|ABI82061.1| beta-lactamase [Cloning vector pGEM-S1]
gi|114846944|gb|ABI82062.1| beta-lactamase [Cloning vector pGEM-WIZ]
gi|114848843|gb|ABI82063.1| ampicillin resistance protein [Cloning vector pDRIVE]
gi|115291316|gb|ABI93158.1| ampicillin resistance protein [Cloning vector pOri1]
gi|115291322|gb|ABI93163.1| ampicillin resistance protein [Cloning vector pCW]
gi|115291328|gb|ABI93168.1| ampicillin resistance protein [Cloning vector pCW1]
gi|115291334|gb|ABI93173.1| ampicillin resistance protein [Cloning vector pCW2]
gi|115342876|gb|ABI94440.1| synthetic beta-lactamase [Firefly luciferase reporter vector
pGL4.23[luc2/minP]]
gi|115342879|gb|ABI94442.1| synthetic beta-lactamase [Firefly luciferase reporter vector
pGL4.24[luc2P/minP]]
gi|115342882|gb|ABI94444.1| synthetic beta-lactamase [Firefly luciferase reporter vector
pGL4.25[luc2CP/minP]]
gi|115342885|gb|ABI94446.1| synthetic beta-lactamase [Firefly luciferase reporter vector
pGL4.26[luc2/minP/Hygro]]
gi|115342889|gb|ABI94449.1| synthetic beta-lactamase [Firefly luciferase reporter vector
pGL4.27[luc2P/minP/Hygro]]
gi|115342893|gb|ABI94452.1| synthetic beta-lactamase [Firefly luciferase reporter vector
pGL4.28[luc2CP/minP/Hygro]]
gi|115342897|gb|ABI94455.1| synthetic beta-lactamase [Firefly luciferase reporter vector
pGL4.29[luc2P/CRE/Hygro]]
gi|115342901|gb|ABI94458.1| synthetic beta-lactamase [Firefly luciferase reporter vector
pGL4.30[luc2P/NFAT-RE/Hygro]]
gi|115600309|gb|ABJ15761.1| beta lactamase [Cloning vector pQLinkHD]
gi|115600314|gb|ABJ15765.1| beta lactamase [Cloning vector pQLinkGD]
gi|115600328|gb|ABJ15770.1| beta lactamase [Cloning vector pQLinkH]
gi|115600333|gb|ABJ15772.1| beta lactamase [Cloning vector pQLinkG]
gi|116062035|dbj|BAF34650.1| beta-lactamase [HIV-1 vector pNL-DT5R]
gi|116600909|gb|ABK01324.1| beta-lactamase [knock-in vector pCSR1]
gi|116600922|gb|ABK01325.1| beta-lactamase [knock-in vector pCSR1::hph]
gi|117571416|gb|ABK40092.1| beta-lactamase [Mammalian expression vector pF12A RM Flexi]
gi|117571423|gb|ABK40097.1| beta-lactamase [Inducible protein expression vector pReg Neo]
gi|117582002|gb|ABK41446.1| bla [YAC construction vector pRML2]
gi|117939119|dbj|BAF36708.1| ampicillin resistance protein [Expression vector pCXGFP-1]
gi|117957127|gb|ABK59032.1| ampicillin resistance protein [BAC cloning vector
P[acman]-ApR-F-2-5]
gi|117957131|gb|ABK59034.1| ampicillin resistance protein [BAC cloning vector
attB-P[acman]-ApR-F-2-5-attB]
gi|118197019|emb|CAL69695.1| beta-lactamase [Acinetobacter baylyi]
gi|118200846|gb|ABK79305.1| ampicillin resistance [Cloning/transgenesis vector pBS-C5]
gi|118200848|gb|ABK79306.1| ampicillin resistance [Cloning/transgenesis vector
pBS-C5_delta_SphI]
gi|118200857|gb|ABK79310.1| ampicillin resistance [Cloning/transgenesis vector pCaSpeR5]
gi|119035843|gb|ABL60858.1| ampicillin resistance [Expression vector pCeMM-NTAP(GS)-Gw]
gi|119035857|gb|ABL60861.1| ampicillin resistance [Expression vector pCeMM-CTAP(SG)-Gw]
gi|119443897|gb|ABL75294.1| beta-lactamase [Cloning vector pKOS405-159]
gi|119443901|gb|ABL75297.1| beta-lactamase [Cloning vector pKOS405-156]
gi|119514753|gb|ABL76153.1| extended spectrum beta-lactamase [Escherichia coli]
gi|121763168|gb|ABM65099.1| beta-lactamase [Expression vector pUNIV]
gi|122893027|gb|ABM67531.1| beta-lactamase [Shuttle vector pLvCmvMYOCDHA]
gi|123979208|gb|ABM81536.1| TEM extended spectrum beta-lactamase [Escherichia coli]
gi|123979210|gb|ABM81537.1| TEM extended spectrum beta-lactamase [Escherichia coli]
gi|124015072|gb|ABM88726.1| beta lactamase [Baculovirus expression/transfer vector pFB-LIC-Bse]
gi|124109224|gb|ABM91081.1| beta lactamase precursor [Cloning vector pQLinkN]
gi|124109386|gb|ABM91086.1| beta lactamase [Cloning vector pAAV-EF1alpha-hFAH.AOS2]
gi|124302113|gb|ABN05235.1| beta-lactamase [Yeast tagging vector pFA6a-VN-His3MX6]
gi|124302116|gb|ABN05237.1| beta-lactamase [Yeast tagging vector pFA6a-VC-His3MX6]
gi|124302119|gb|ABN05239.1| beta-lactamase [Yeast tagging vector pFA6a-VN-TRP1]
gi|124302121|gb|ABN05240.1| beta-lactamase [Yeast tagging vector pFA6a-His3MX6-pGAL1-VC]
gi|124302124|gb|ABN05242.1| beta-lactamase [Yeast tagging vector pFA6a-TRP1-pGAL1-VN]
gi|124302128|gb|ABN05245.1| beta-lactamase [Yeast tagging vector pFA6a-VC-TRP1]
gi|124302131|gb|ABN05247.1| beta-lactamase [Yeast tagging vector pFA6a-VN-kanMX6]
gi|124302134|gb|ABN05249.1| beta-lactamase [Yeast tagging vector pFA6a-VC-kanMX6]
gi|124302136|gb|ABN05250.1| beta-lactamase [Yeast tagging vector pFA6a-His3MX6-pGAL1-VN]
gi|124302139|gb|ABN05252.1| beta-lactamase [Yeast tagging vector pFA6a-TRP1-pGAL1-VC]
gi|124302142|gb|ABN05254.1| beta-lactamase [Yeast tagging vector pFA6a-kanMX6-pGAL1-VN]
gi|124302145|gb|ABN05256.1| beta-lactamase [Yeast tagging vector pFA6a-kanMX6-pGAL1-VC]
gi|124302148|gb|ABN05258.1| beta-lactamase [Yeast tagging vector pFA6a-His3MX6-pRPL7B-VN]
gi|124302151|gb|ABN05260.1| beta-lactamase [Yeast tagging vector pFA6a-His3MX6-pRPL7B-VC]
gi|124302154|gb|ABN05262.1| beta-lactamase [Yeast tagging vector pFA6a-TRP1-pRPL7B-VN]
gi|124302157|gb|ABN05264.1| beta-lactamase [Yeast tagging vector pFA6a-TRP1-pRPL7B-VC]
gi|124302160|gb|ABN05266.1| beta-lactamase [Yeast tagging vector pFA6a-kanMX6-pRPL7B-VN]
gi|124302163|gb|ABN05268.1| beta-lactamase [Yeast tagging vector pFA6a-kanMX6-pRPL7B-VC]
gi|124361324|gb|ABN09230.1| beta-lactamase [Cloning vector pLvCmvLacZ.Gfp]
gi|124361329|gb|ABN09233.1| beta-lactamase [Cloning vector pLvCmvMyocardin.Gfp]
gi|124365229|gb|ABN09639.1| AmpR [Yeast centromeric expression vector p416CYC]
gi|124365232|gb|ABN09641.1| AmpR [Yeast centromeric expression vector p416TEF]
gi|124365834|gb|ABN09912.1| beta-lactamase [Retroviral cloning vector LB-G]
gi|125743122|gb|ABN54771.1| beta-lactamase [Expression vector pUC19-T7pol-lacI-lys]
gi|125971757|gb|ABN58900.1| beta-lactamase [Expression vector pETHSUL]
gi|125971762|gb|ABN58904.1| beta-lactamase [Expression vector pETS2SUL]
gi|125971768|gb|ABN58909.1| beta-lactamase [Expression vector pASHSUL]
gi|125971773|gb|ABN58913.1| beta-lactamase [Expression vector pASS2SUL]
gi|125976352|gb|ABN59502.1| ampicillin resistance protein [Cloning vector pSAT6-DEST-EYFP-C1]
gi|125976357|gb|ABN59506.1| ampicillin resistance protein [Cloning vector pSAT6-DEST-ECFP-C1]
gi|125976362|gb|ABN59510.1| ampicillin resistance protein [Cloning vector pSAT6-DEST-RFP-C1]
gi|125976367|gb|ABN59514.1| ampicillin resistance [Cloning vector pSAT6A-DEST-RFP-N1]
gi|125976372|gb|ABN59518.1| ampicillin resistance protein [Cloning vector pSAT6A-DEST-ECFP-N1]
gi|125976377|gb|ABN59522.1| ampicillin resistance protein [Cloning vector pSAT6A-DEST-EGFP-N1]
gi|125976382|gb|ABN59526.1| ampicillin resistance protein [Cloning vector pSAT6-DEST-RFP-N1]
gi|125976386|gb|ABN59529.1| Amp [Cloning vector pSAT6-DEST]
gi|125976390|gb|ABN59532.1| Amp [Cloning vector pSAT6A-DEST]
gi|125976392|gb|ABN59533.1| ampicillin resistance protein [Cloning vector pSAT6A-MCS]
gi|126165443|gb|ABN80179.1| beta-lactamase [Expression vector pOPING]
gi|126165445|gb|ABN80180.1| beta-lactamase [Expression vector pOPINJ]
gi|126165447|gb|ABN80181.1| beta-lactamase [Expression vector pOPINM]
gi|126165449|gb|ABN80182.1| beta-lactamase [Expression vector pOPINE]
gi|126165451|gb|ABN80183.1| beta-lactamase [Expression vector pOPINF]
gi|126636211|gb|ABO25746.1| beta lactamase precursor [Cloning vector pQTEV2]
gi|129278853|gb|ABO28856.1| beta-lactamase [Cloning vector pD-Nus1]
gi|133854399|gb|ABO39208.1| beta-lactamase [Cloning vector pJY-mini-Tn7T-Sm]
gi|133854409|gb|ABO39211.1| beta-lactamase [Cloning vector pJY-mini-Tn7T-gus-Sm]
gi|134105592|gb|ABO60940.1| beta-lactamase [Baculovirus expression/transfer vector pFBOH-LIC]
gi|134285023|gb|ABO69572.1| beta lactamase [pGERM gene disruption vector]
gi|134307085|gb|ABO72540.1| beta-lactamase [Integrative expression vector pFPN]
gi|138375568|gb|ABO76906.1| beta-lactamase [Cloning vector GWluc-basic]
gi|138375583|gb|ABO76909.1| ampicillin resistance protein [Expression vector pCeMM-NTAP(GS)]
gi|138375597|gb|ABO76912.1| ampicillin resistance protein [Expression vector pCeMM-CTAP(SG)]
gi|138754326|emb|CAL59731.1| beta-lactamase [Cloning vector pSC101BADgbaA-ISceI(amp)]
gi|144227900|gb|ABO93510.1| beta-lactamase [Yeast integrative vector pINTyrA]
gi|144227902|gb|ABO93511.1| beta-lactamase [Yeast integrative vector pINTyrB]
gi|144227904|gb|ABO93512.1| beta-lactamase [Yeast integrative vector pINTyrC]
gi|144227907|gb|ABO93514.1| beta-lactamase [Yeast integrative vector pINTyrD]
gi|145284372|gb|ABP51952.1| beta lactamase [Cloning vector pRPGSM]
gi|145308248|gb|ABP57387.1| AmpR [Shuttle vector pYESDR196]
gi|145308254|gb|ABP57392.1| AmpR [Shuttle vector pGWFDR196]
gi|145308260|gb|ABP57397.1| AmpR [Shuttle vector pFGWDR196]
gi|145423881|gb|ABP68578.1| beta-lactamase [Yeast tagging vector pFA6a-His3MX6-pCET1-VN]
gi|145423884|gb|ABP68580.1| beta-lactamase [Yeast tagging vector pFA6a-His3MX6-pCET1-VC]
gi|145423887|gb|ABP68582.1| beta-lactamase [Yeast tagging vector pFA6a-TRP1-pCET1-VN]
gi|145423890|gb|ABP68584.1| beta-lactamase [Yeast tagging vector pFA6a-TRP1-pCET1-VC]
gi|145423893|gb|ABP68586.1| beta-lactamase [Yeast tagging vector pFA6a-kanMX6-pCET1-VN]
gi|145423896|gb|ABP68588.1| beta-lactamase [Yeast tagging vector pFA6a-kanMX6-pCET1-VC]
gi|145834039|gb|ABP96790.1| beta-lactamase [Cloning vector pHyVec7]
gi|145849102|emb|CAM91299.1| beta-lactamase [Cloning vector pBLCAT3T]
gi|146189494|emb|CAM91222.1| beta lactamase [Cloning vector pZEU]
gi|146189497|emb|CAM91224.1| bla [Cloning vector pZEL]
gi|146189500|emb|CAM91226.1| beta lactamase [Cloning vector pZEA]
gi|146189504|emb|CAM91743.1| beta lactamase [Expression vector pZCRE]
gi|146189508|emb|CAM91746.1| beta lactamase [Expression vector pZGFP]
gi|146189511|emb|CAM91748.1| beta lactamase [Cloning vector pZCA]
gi|146189514|emb|CAM91750.1| beta lactamase [Cloning vector pZCAL]
gi|146189517|emb|CAM91752.1| beta lactamase [Cloning vector pZCAA]
gi|146189590|emb|CAM92323.1| beta-lactamase [Cloning vector pBLCAT3T-p1]
gi|146189593|emb|CAM92325.1| beta-lactamase [Cloning vector pBLCAT3T-p3]
gi|146189596|emb|CAM92327.1| beta-lactamase [Cloning vector pBLCAT3T-p4]
gi|146189599|emb|CAM92329.1| beta-lactamase [Cloning vector pBLCAT3T-p5]
gi|146189602|emb|CAM92331.1| beta-lactamase [Cloning vector pBLCAT3T-NP191]
gi|146189605|emb|CAM92333.1| beta-lactamase [Cloning vector pBLCAT3T-NP192]
gi|146272044|emb|CAM91985.1| beta lactamase [Expression vector pCUG6]
gi|146455413|dbj|BAF62257.1| unnamed protein product [Gene silencing vector pSilent-1]
gi|146743449|gb|ABQ43173.1| AmpR [Plant transit expression vector pSAT6-EGFP-Ca]
gi|146743452|gb|ABQ43175.1| AmpR [Plant transit expression vector pSAT6-EGFP-Cb]
gi|146743455|gb|ABQ43177.1| AmpR [Plant transit expression vector pSAT6-EGFP-Cc]
gi|146760340|dbj|BAF62422.1| beta-lactamase [PCR template vector pTF101]
gi|146760343|dbj|BAF62424.1| beta-lactamase [PCR template vector pTF103]
gi|146760346|dbj|BAF62426.1| beta-lactamase [PCR template vector pTF102]
gi|146760349|dbj|BAF62428.1| beta-lactamase [PCR template vector pTF104]
gi|147842915|dbj|BAF62545.1| beta-lactamase [synthetic construct]
gi|148466472|gb|ABQ65202.1| beta-lactamase [Cloning vector pIPKTA30N]
gi|149999562|gb|ABR53873.1| beta-lactamase [cloning vector pJET1.2]
gi|152014022|gb|ABS20113.1| beta-lactamase [Shuttle vector pLvCmvMYOCD2aHA]
gi|152955956|emb|CAO79589.1| beta-lactamase [Cloning vector pDH51-GW-CFP]
gi|152955961|emb|CAO79593.1| beta-lactamase [Cloning vector pDH51-GW-YFP]
gi|152955966|emb|CAO79597.1| beta-lactamase [Cloning vector pDH51-GW-EGFP]
gi|154814567|gb|ABS87326.1| beta-lactamase [Cloning vector pCPP5249]
gi|154814571|gb|ABS87329.1| beta-lactamase [Cloning vector pCPP5250]
gi|154814574|gb|ABS87331.1| Bla [Cloning vector pCPP5209]
gi|154814578|gb|ABS87334.1| beta-lactamase [Cloning vector pCPP5212]
gi|154814581|gb|ABS87336.1| Bla [Cloning vector pCPP5242]
gi|154814585|gb|ABS87339.1| beta-lactamase [Cloning vector pCPP5243]
gi|154845478|gb|ABS88290.1| beta-lactamase [Cloning vector pELI3.1]
gi|154918187|gb|ABS88737.1| beta-lactamase [shuttle vector pUCP18-RedS]
gi|155733548|gb|ABU39918.1| ampicillin resistance protein [Cloning vector pSAT4.35S.RNAi]
gi|155733550|gb|ABU39919.1| ampicillin resistance protein [cloning vector pSAT3.masP.RNAi]
gi|155733552|gb|ABU39920.1| ampicillin resistance protein [Cloning vector pSAT6.supP.RNAi]
gi|155733554|gb|ABU39921.1| ampicillin resistance protein [Cloning vector pSAT6.35S.RNAi]
gi|155733556|gb|ABU39922.1| ampicillin resistance protein [Cloning vector pSAT6.masP.RNAi]
gi|155733558|gb|ABU39923.1| ampicillin resistance protein [Cloning vector pSAT6.rbcP.RNAi]
gi|155733560|gb|ABU39924.1| ampicillin resistance protein [Cloning vector pSAT5.nosP.RNAi]
gi|156104662|emb|CAO91537.1| beta-lactamase [Cloning vector pDH51-GW-YFPn]
gi|156104667|emb|CAO91541.1| beta-lactamase [Cloning vector pDH51-GW-YFPc]
gi|156523807|gb|ABU68996.1| bata-lactamase [Cloning vector pHB168-66]
gi|156630249|gb|ABU89801.1| ampicillin resistance protein [Cloning vector
pattP-ampicillin-attP]
gi|157058856|gb|ABV03162.1| beta lactamase [Cloning vector JSC]
gi|157064990|gb|ABV04339.1| beta-lactamase [Cloning vector pCM433]
gi|157091289|gb|ABV21784.1| beta-lactamase [CMV Flexi Vector pFC14A (HaloTag 7)]
gi|157165876|gb|ABV25014.1| ampicillin resistance protein [Cloning vector pTriplEx2]
gi|157272165|gb|ABV26714.1| beta-lactamase [Neurospora expression vector pYFP]
gi|157272167|gb|ABV26715.1| beta-lactamase [Neurospora expression vector pYFPN]
gi|157272169|gb|ABV26716.1| beta-lactamase [Neurospora expression vector pYFPC]
gi|157739378|gb|ABV69054.1| beta-lactamase [Cloning vector pAAV-ISceI.AO3]
gi|158327644|emb|CAO81986.1| beta-lactamase [Reporter vector pCH2B]
gi|158327648|emb|CAO81989.1| beta-lactamase [Reporter vector pYH2A]
gi|158343351|gb|ABW35342.1| beta-lactamase [Tn7 transposase expression vector pTNS3]
gi|158343358|gb|ABW35348.1| beta-lactamase [Kanamycin resistance FRT vector pFKM2]
gi|158343360|gb|ABW35349.1| beta-lactamase [Kanamycin resistance loxP vector pLKM1]
gi|158343363|gb|ABW35351.1| beta-lactamase [Zeocin resistance loxP vector pLZE1]
gi|158343366|gb|ABW35353.1| beta-lactamase [loxP vector pLOX1]
gi|158343393|gb|ABW35375.1| beta-lactamase [Transposition vector pUC18T-mini-Tn7T-Zeo::loxP]
gi|158343396|gb|ABW35377.1| beta-lactamase [Transposition vector pUC18T-mini-Tn7T-Km::loxP]
gi|158426711|gb|ABW38022.1| beta-lactamase [Cloning vector pHyVec11]
gi|158516880|gb|ABW70116.1| ampicillin resistance protein [Cloning vector pSB156]
gi|158534338|gb|ABW71927.1| beta-lactamase [Mammalian expression vector pNBioSec]
gi|158536735|gb|ABW72884.1| beta-lactamase [Expression vector pKLAC2]
gi|159131950|gb|ABW88016.1| beta-lactamase [Cloning vector pEASY-T1]
gi|159149198|gb|ABW91162.1| beta lactamase [Transposition Vector MightyMu_ACT]
gi|159149201|gb|ABW91164.1| beta lactamase [Transposition Vector MightyMu_GUSB]
gi|159149203|gb|ABW91165.1| beta lactamase [Transposition Vector MightyMu_GUSA]
gi|159159447|gb|ABW94986.1| beta-lactamase [Transposition vector pUC18T-mini-Tn7T-Km::FRT]
gi|160688651|gb|ABX45106.1| B-lactamase [Broad host range reporter vector pMJ445]
gi|160714701|gb|ABX47152.1| beta-lactamase [Cloning vector pVMG-TnpR]
gi|160714707|gb|ABX47157.1| beta-lactamase [Cloning vector pVMGCRT85]
gi|160714748|gb|ABX47170.1| beta-lactamase [Yeast tagging vector pFA6a-GFP-KlURA3]
gi|160714751|gb|ABX47172.1| beta-lactamase [Yeast tagging vector pFA6a-TAP-KlURA3]
gi|160714754|gb|ABX47174.1| beta-lactamase [Yeast tagging vector pFA6a-GST-KlURA3]
gi|160714757|gb|ABX47176.1| beta-lactamase [Yeast tagging vector pFA6a-myc-KlURA3]
gi|160714760|gb|ABX47178.1| beta-lactamase [Yeast tagging vector pFA6a-HA-KlURA3]
gi|160892423|gb|ABX52090.1| beta-lactamase [FRT source vector pFRT3]
gi|160892427|gb|ABX52093.1| beta-lactamase [Expression vector pUC18T-mini-Tn7T-LAC-Gm]
gi|161085612|dbj|BAF93888.1| beta-lactamase [Suicide vector pYMD1]
gi|161375738|gb|ABX71214.1| AmpR [Cloning vector pXEN]
gi|161375740|gb|ABX71215.1| AmpR [Cloning vector pXEN-pQ108]
gi|163929660|dbj|BAF95892.1| beta-lactamase [Cloning vector pHIT88]
gi|163943733|gb|ABY48989.1| beta-lactamase [CMVd1 Flexi Vector pFC15A (HaloTag 7)]
gi|163943739|gb|ABY48993.1| beta-lactamase [CMVd2 Flexi Vector pFC16A (HaloTag 7)]
gi|163943745|gb|ABY48997.1| beta-lactamase [CMVd3 Flexi Vector pFC17A (HaloTag 7)]
gi|163955600|gb|ABY49798.1| AmpR [Cloning vector pUASpDir]
gi|164470294|gb|ABY57991.1| beta-lactamase [Cloning vector pWFRT-mer]
gi|164470299|gb|ABY57995.1| beta-lactamase [Cloning vector pWFRT-tel]
gi|164470309|gb|ABY58002.1| beta-lactamase [Cloning vector pGFPm-T]
gi|164499366|gb|ABY59253.1| beta-lactamase [Cloning vector pRL446]
gi|164600702|gb|ABY61790.1| Bla [FRT-Tp-FRT expression vector pwFRT-PCS12-Tp]
gi|165909630|gb|ABY73724.1| beta-lactamase [Cloning vector pEX18Ap-pheS]
gi|165940588|gb|ABY75239.1| beta-lactamase [Yeast tagging vector pFA6a-FLAG-KlURA3]
gi|165940639|gb|ABY75255.1| beta-lactamase [Cloning vector pUC57-Bt-pheS]
gi|166163670|gb|ABY83637.1| beta-lactamase [Shuttle vector pZJY41]
gi|166163674|gb|ABY83640.1| beta-lactamase [Shuttle vector pZJY156]
gi|167650947|gb|ABZ90952.1| beta-lactamase [Cloning vector pBC542]
gi|169068002|gb|ACA42566.1| ampicillin resistance protein [Cloning vector pCa4B]
gi|169068004|gb|ACA42567.1| ampicillin resistance protein [Cloning vector pCa4B2G]
gi|169068006|gb|ACA42568.1| ampicillin resistance protein [Transformation vector
pCa4B::UAS-luciferase]
gi|169068009|gb|ACA42570.1| ampicillin resistance protein [Transformation vector
pCa4B::UAS-NotchRNAi]
gi|169068011|gb|ACA42571.1| ampicillin resistance protein [Transformation vector
pCa4B2G-UAS::luciferase]
gi|169159123|dbj|BAG12080.1| beta-lactamase [Reporter plasmid pSUR]
gi|169656100|gb|ACA62827.1| beta-lactamase [synthetic construct]
gi|169822913|gb|ACA96517.1| beta-lactamase [Expression vector pYB100]
gi|169881902|gb|ACA96989.1| beta-lactamase [Expression vector pRESQ101]
gi|169881905|gb|ACA96991.1| beta-lactamase [Expression vector pRESQ70]
gi|169921145|gb|ACB05483.1| beta-lactamase [BioBrick base vector BBa_I51020]
gi|169921148|gb|ACB05485.1| beta-lactamase [BioBrick cloning vector pSB4A5-I52002]
gi|170774033|gb|ACB32236.1| beta-lactamase [Gene silencing vector pJRTCLCrVA.008]
gi|170774039|gb|ACB32241.1| beta-lactamase [Gene silencing vector pJRTCLCrVA.009]
gi|171188277|gb|ACB41734.1| beta-lactamase [Shuttle vector pMK4]
gi|171188285|gb|ACB41741.1| beta-lactamase [Shuttle vector pMK3]
gi|171193991|gb|ACB45182.1| beta-lactamase [Cloning vector pMQ2]
gi|171198201|gb|ACB45424.1| beta lactamase [Shuttle vector pUCG18]
gi|171466749|gb|ACB46535.1| beta-lactamase [CAT-levansucrase counter-selection vector pLOI4162]
gi|182410404|gb|ACB88209.1| Amp [Chloroplast transformation Vector pTox]
gi|183013546|gb|ACC38296.1| beta-lactamase [Cloning vector pBGT1]
gi|183014373|dbj|BAG24285.1| beta-lactamase [Shuttle vector pRS414PTadh]
gi|183014376|dbj|BAG24287.1| beta-lactamase [Shuttle vector pRS414TPadh]
gi|183181584|gb|ACC44848.1| synthetic beta-lactamase resistance protein [Firefly luciferase
reporter vector pGL4.32[luc2P/NFkB-RE/Hygro]]
gi|186470147|gb|ACC85621.1| beta-lactamase [T7 Flexi Vector pFN18A (HaloTag 7)]
gi|186470153|gb|ACC85625.1| beta-lactamase [T7 SP6 Flexi Vector pFN19A (HaloTag 7)]
gi|186470159|gb|ACC85629.1| beta-lactamase [T7 SP6 Flexi Vector pFC20A (HaloTag 7)]
gi|186702984|gb|ACC91726.1| beta-lactamase [Cloning vector pSB4234]
gi|186703044|gb|ACC91757.1| ampicillin resistance protein [Cloning vector pWSTK2]
gi|186703050|gb|ACC91762.1| ampicillin resistance protein [Cloning vector pWSTK3]
gi|186703060|gb|ACC91770.1| ampicillin resistance protein [Cloning vector pEGFPpA-ACN]
gi|186703065|gb|ACC91774.1| ampicillin resistance protein [Cloning vector pECFPpA-ACN]
gi|186703070|gb|ACC91778.1| ampicillin resistance protein [Cloning vector pAP-ACN]
gi|186703075|gb|ACC91782.1| ampicillin resistance protein [Cloning vector pnlslacZ-ACN]
gi|186703080|gb|ACC91786.1| ampicillin resistance protein [Cloning vector pEYFPpA-ACN]
gi|187372914|gb|ACD03182.1| beta-lactamase [Tagging vector pFA6a-KanMX6-P3nmt1-3FLAG]
gi|187372918|gb|ACD03185.1| beta-lactamase [Tagging vector pFA6a-KanMX6-P41nmt1-3FLAG]
gi|187372922|gb|ACD03188.1| beta-lactamase [Tagging vector pFA6a-KanMX6-P81nmt1-3FLAG]
gi|187372926|gb|ACD03191.1| beta-lactamase [Tagging vector pFA6a-his3-P3nmt1-3FLAG]
gi|187372930|gb|ACD03194.1| beta-lactamase [Tagging vector pFA6a-his3-P41nmt1-3FLAG]
gi|187372934|gb|ACD03197.1| beta-lactamase [Tagging vector pFA6a-his3-P81nmt1-3FLAG]
gi|187372940|gb|ACD03202.1| beta-lactamase [Tagging vector pFA6a-5FLAG-kanMX6]
gi|187372944|gb|ACD03205.1| beta-lactamase [Tagging vector pFA6a-5FLAG-hphMX6]
gi|187372948|gb|ACD03208.1| beta-lactamase [Tagging vector pFA6a-5FLAG-natMX6]
gi|187373059|gb|ACD03263.1| beta-lactamase class A [Cloning vector p7Z6]
gi|187373061|gb|ACD03264.1| PenP [Cloning vector p7S6]
gi|187710955|gb|ACD14088.1| beta-lactamase [Cloning vector pFY20]
gi|189038585|gb|ACD75465.1| ampicillin resistance protein [Expression vector pESPBAC]
gi|189094761|emb|CAQ57440.1| beta lactamase [Trypanosoma brucei brucei]
gi|190692995|gb|ACE88256.1| beta-lactamase [Expression vector pOPING-ET]
gi|190692997|gb|ACE88257.1| beta-lactamase [Expression vector pOPINVH]
gi|190692999|gb|ACE88258.1| beta-lactamase [Expression vector pOPINVL]
gi|190888542|gb|ACE95897.1| Beta-lactamase [Cloning vector pGloSensor-10F]
gi|190888545|gb|ACE95899.1| beta-lactamase [Cloning vector pGloSensor-10F[TEV]]
gi|192757948|gb|ACF04936.1| beta-lactamase [Template plasmid pCLF3]
gi|192757951|gb|ACF04938.1| beta-lactamase [Template plasmid pCLF4]
gi|193246596|gb|ACF17165.1| ampicillin resistance protein [Yeast selection vector pIS418]
gi|193246599|gb|ACF17167.1| ampicillin resistance protein [Yeast selection vector pIS419]
gi|193246602|gb|ACF17169.1| ampicillin resistance protein [Yeast selection vector pIS420]
gi|193246605|gb|ACF17171.1| ampicillin resistance protein [Yeast selection vector pIS421]
gi|193246608|gb|ACF17173.1| ampicillin resistance protein [Yeast selection vector pIS438]
gi|193299421|gb|ACF17853.1| Bla [Escherichia-Pseudomonas shuttle vector pHERD20T]
gi|193870784|gb|ACF22982.1| beta-lactamase [CMV Flexi Vector pFN21A (HaloTag 7)]
gi|193870790|gb|ACF22986.1| beta-lactamase [CMVd1 Flexi Vector pFN22A (HaloTag 7)]
gi|193870796|gb|ACF22990.1| beta-lactamase [CMVd2 Flexi Vector pFN23A (HaloTag 7)]
gi|193870802|gb|ACF22994.1| beta-lactamase [CMVd3 Flexi Vector pFN24A (HaloTag 7)]
gi|194032784|emb|CAQ77012.1| beta-lactamase [Shuttle vector pNEV-E]
gi|194032787|emb|CAQ77014.1| beta-lactamase [Shuttle vector pNEV-N]
gi|194473372|emb|CAR31382.1| ampicilin resistance protein [PCR template vector pZC1]
gi|194473375|emb|CAR31384.1| ampicilin resistance protein [PCR template vector pZC2]
gi|194473378|emb|CAR31386.1| ampicilin resistance protein [PCR template vector pZC3]
gi|194473381|emb|CAR31388.1| ampicilin resistance protein [PCR template vector pZC4]
gi|194473385|emb|CAR31391.1| ampicilin resistance protein [Recombinase expression vector
pCre-ble]
gi|194579640|gb|ACF75743.1| beta-lactamase [expression vector pGloSensor-20F cAMP]
gi|194716694|gb|ACF93190.1| beta-lactamase [Flexi vector pF25A/BR610]
gi|194716700|gb|ACF93194.1| beta-lactamase [Luciferase ICE T7 Control vector]
gi|195972363|gb|ACG61340.1| Bla [Expression vector pYAA-ZP-MCS]
gi|195972447|gb|ACG61351.1| beta-lactamase class A [Expression vector pTSC]
gi|196475279|gb|ACG76133.1| beta-lactamase [cloning vector pFloxin]
gi|196475281|gb|ACG76134.1| beta-lactamase [cloning vector pFloxin-IRES]
gi|196475283|gb|ACG76135.1| beta-lactamase [cloning vector pFloxin-TAP]
gi|196968520|gb|ACG80831.1| penicillin beta-lactamase [Expression vector pDM310]
gi|196968527|gb|ACG80837.1| penicillin beta-lactamase [Expression vector pDM359]
gi|196968534|gb|ACG80843.1| penicillin beta-lactamase [Expression vector pDM360]
gi|196968541|gb|ACG80849.1| penicillin beta-lactamase [Expression vector pDM309]
gi|197215835|gb|ACH53165.1| beta-lactamase [Luciferase reporter vector pGL4.50[luc2/CMV/Hygro]]
gi|197215839|gb|ACH53168.1| beta-lactamase [Firefly luciferase reporter vector
pGL4.51[luc2/CMV/Neo]]
gi|197223714|gb|ACH53386.1| beta-lactamase [Tagging vector pFA6a-5FLAG-bleMX6]
gi|197223716|gb|ACH53387.1| beta-lactamase [Tagging vector pFA6a-natMX6-P3nmt1-3FLAG]
gi|197223720|gb|ACH53390.1| beta-lactamase [Tagging vector pFA6a-natMX6-P41nmt1-3FLAG]
gi|197223724|gb|ACH53393.1| beta-lactamase [Tagging vector pFA6a-natMX6-P81nmt1-3FLAG]
gi|197223728|gb|ACH53396.1| beta-lactamase [Tagging vector pFA6a-hphMX6-P3nmt1-3FLAG]
gi|197223732|gb|ACH53399.1| beta-lactamase [Tagging vector pFA6a-hphMX6-P41nmt1-3FLAG]
gi|197223736|gb|ACH53402.1| beta-lactamase [Tagging vector pFA6a-hphMX6-P81nmt1-3FLAG]
gi|197223740|gb|ACH53405.1| beta-lactamase [Tagging vector pFA6a-bleMX6-P3nmt1-3FLAG]
gi|197223744|gb|ACH53408.1| beta-lactamase [Tagging vector pFA6a-bleMX6-P41nmt1-3FLAG]
gi|197223748|gb|ACH53411.1| beta-lactamase [Tagging vector pFA6a-bleMX6-P81nmt1-3FLAG]
gi|197223752|gb|ACH53414.1| beta-lactamase [Tagging vector pFA6a-kanMX6-Purg1-3FLAG]
gi|197223756|gb|ACH53417.1| beta-lactamase [Tagging vector pFA6a-natMX6-Purg1-3FLAG]
gi|197223760|gb|ACH53420.1| beta-lactamase [Tagging vector pFA6a-hphMX6-Purg1-3FLAG]
gi|197223764|gb|ACH53423.1| beta-lactamase [Tagging vector pFA6a-bleMX6-Purg1-3FLAG]
gi|197322810|gb|ACH69156.1| ampicillin resistance protein [Shuttle vector pRS415]
gi|197342845|gb|ACH69349.1| ampicillin resistance protein [Cloning vector pMAK27]
gi|197693457|gb|ACH71402.1| beta-lactamase [Dicistronic cloning vector pXLJ Con]
gi|197693461|gb|ACH71405.1| beta-lactamase [Dicistronic cloning vector pXL-Id]
gi|198078136|gb|ACH81548.1| penicillin beta-lactamase [Expression vector pDM304]
gi|198078143|gb|ACH81554.1| penicillin beta-lactamase [Expression vector pDM320]
gi|198078149|gb|ACH81559.1| penicillin beta-lactamase [Expression vector pDM326]
gi|198078155|gb|ACH81564.1| penicillin beta-lactamase [Expression vector pDM358]
gi|198078159|gb|ACH81567.1| penicillin beta-lactamase [Cloning vector 1-21]
gi|198078162|gb|ACH81569.1| penicillin beta-lactamase [Cloning vector pDM313]
gi|198078165|gb|ACH81571.1| penicillin beta-lactamase [Cloning vector pDM131]
gi|198078168|gb|ACH81573.1| penicillin beta-lactamase [Cloning vector pDM312]
gi|198078170|gb|ACH81574.1| penicillin beta-lactamase [Cloning vector pDM229]
gi|198079172|gb|ACH81575.1| penicillin beta-lactamase [Cloning vector pDM276]
gi|198079175|gb|ACH81577.1| penicillin beta-lactamase [Cloning vector pDM193]
gi|198079179|gb|ACH81580.1| penicillin beta-lactamase [Cloning vector pDM347]
gi|207339213|gb|ACI23597.1| ampicillin resistance protein [Integrating YFP promoter analysis
vector pJG100]
gi|209403506|gb|ACI46134.1| beta-lactamase [Expression vector pKLMF-EK]
gi|209403510|gb|ACI46137.1| beta-lactamase [Expression vector pKLMF-FX]
gi|209403514|gb|ACI46140.1| beta-lactamase [Expression vector pKLAC1-Gluc]
gi|209981403|gb|ACJ05374.1| beta-lactamase [Yeast tagging vector pTAPKan1]
gi|210151264|gb|EEA82272.1| hypothetical protein CLONEX_01829 [Clostridium nexile DSM 1787]
gi|212717247|gb|ACJ37465.1| beta-lactamase [Cloning vector pmirGLO]
gi|212725372|gb|ACJ38093.1| penicillin beta-lactamase [Shuttle vector NgoMIV]
gi|215789972|gb|ACJ70056.1| Bla [Cloning vector pwFRT-GSr]
gi|217030808|dbj|BAH02681.1| beta-lactamase [Mammalian expression vector pmAlbEPintPlauGH]
gi|220942110|dbj|BAH11109.1| beta-lactamase [Suicide vector pYMD2]
gi|220978682|gb|ACL97679.1| beta-lactamase [Expression vector pHF5Ca]
gi|221229251|gb|ACM09996.1| beta-lactamase [Neurospora expression vector pCCG::C-3xFLAG]
gi|221229253|gb|ACM09997.1| beta-lactamase [Neurospora expression vector pMF270]
gi|221229255|gb|ACM09998.1| beta-lactamase [Neurospora expression vector pMF276]
gi|221229257|gb|ACM09999.1| beta-lactamase [Neurospora expression vector pCCG::C-HAT::FLAG]
gi|221229259|gb|ACM10000.1| beta-lactamase [Yeast shuttle vector pRS416-10xGly]
gi|221229261|gb|ACM10001.1| beta-lactamase [Neurospora expression vector pCCG::C-Gly::3xFLAG]
gi|221229263|gb|ACM10002.1| beta-lactamase [Neurospora expression vector pCCG::C-Gly::GFP]
gi|221229266|gb|ACM10004.1| beta-lactamase [Neurospora expression vector
pCCG::C-Gly::HAT::FLAG]
gi|221229268|gb|ACM10005.1| beta-lactamase [Neurospora expression vector pCCG::N-3xFLAG]
gi|221229270|gb|ACM10006.1| beta-lactamase [Neurospora expression vector pCCG::N-3xMyc]
gi|221229272|gb|ACM10007.1| beta-lactamase [Neurospora expression vector pCCG::N-GFP]
gi|221229275|gb|ACM10009.1| beta-lactamase [Neurospora expression vector pCCG::N-FLAG::HAT]
gi|221229277|gb|ACM10010.1| beta-lactamase [Neurospora expression vector pN-3xHA]
gi|221229292|gb|ACM10020.1| beta-lactamase [Neurospora expression vector pCCG::Cre]
gi|221267808|gb|ACM16585.1| beta-lactamase [Expression vector pHF5Na]
gi|222446256|emb|CAX28479.1| beta-lactamase [Cloning vector pKF-VH]
gi|222446258|emb|CAX28480.1| beta-lactamase [Cloning vector pKF-VL]
gi|222446260|emb|CAX28481.1| beta-lactamase [Cloning vector pKF-SC]
gi|223019788|dbj|BAH22439.1| beta-lactamase [Mammalian expression vector pmAlbEPintUL23GH]
gi|223364523|gb|ACM86778.1| beta-lactamase [Cloning vector pEG(KT)]
gi|223364528|gb|ACM86782.1| beta-lactamase [Cloning vector pEG(KG)]
gi|224180704|gb|ACN39208.1| ampicillin resistance protein [Expression vector pBac0GW]
gi|224180709|gb|ACN39212.1| ampicillin resistance protein [Expression vector pBacHGW]
gi|224180714|gb|ACN39216.1| ampicillin resistance protein [Expression vector pBacAGW]
gi|224180719|gb|ACN39220.1| ampicillin resistance protein [Expression vector pBacRGW]
gi|224180724|gb|ACN39224.1| ampicillin resistance protein [Expression vector pBacFGW]
gi|224180729|gb|ACN39228.1| ampicillin resistance protein [Expression vector pBacYGW]
gi|224180735|gb|ACN39233.1| ampicillin resistance protein [Expression vector pBacGGWH]
gi|224812560|gb|ACN64935.1| AmpC [Yeast two-hybrid vector pGADCg]
gi|224812608|gb|ACN64943.1| amp [Targeting vector pP{white-STAR}]
gi|224998146|gb|ACN77841.1| beta-lactamase resistance protein [Reporter vector
pGL4.33[luc2P/SRE/Hygro]]
gi|224998150|gb|ACN77844.1| beta-lactamase resistance protein [Reporter vector
pGL4.34[luc2P/SRF-RE/Hygro]]
gi|224998154|gb|ACN77847.1| beta-lactamase resistance protein [Reporter vector
pGL4.36[luc2P/MMTV/Hygro]]
gi|225423175|gb|ACN91080.1| beta-lactamase [Site-specific excision vector pBBR1_FLP2]
gi|225675559|gb|ACO05020.1| AmpR [Transformation vector pTtag]
gi|225903559|gb|ACO34942.1| beta-lactamase [P element transformation vector pGX-attP]
gi|225903562|gb|ACO34944.1| beta-lactamase [P element transformation vector pGE-attB]
gi|225903565|gb|ACO34946.1| beta-lactamase [P element transformation vector pGE-attB-GMR]
gi|226320340|gb|ACO48264.1| beta-lactamase [Cloning vector pNIGEL19]
gi|226331123|gb|ACO48267.1| beta-lactamase [Cloning vector pNIGEL07]
gi|226331127|gb|ACO48270.1| beta-lactamase [Cloning vector pNIGEL17]
gi|226331131|gb|ACO48273.1| beta-lactamase [Cloning vector pNIGEL18]
gi|226331139|gb|ACO48276.1| beta-lactamase [Cloning vector pNIGEL09]
gi|226331142|gb|ACO48278.1| beta-lactamase [Cloning vector pNIGEL11]
gi|226331145|gb|ACO48280.1| beta-lactamase [Cloning vector pNIGEL13]
gi|226331149|gb|ACO48283.1| beta-lactamase [Cloning vector pNIGEL15]
gi|226331153|gb|ACO48286.1| beta-lactamase [Cloning vector pNIGEL16]
gi|226442584|dbj|BAH56453.1| beta-lactamase [Shuttle vector pLES003]
gi|227345087|gb|ACP28054.1| ampicillin resistance protein [Expression vector pCEM2]
gi|227810166|gb|ACP41232.1| beta-lactamase [Cloning vector pARAn58]
gi|227810169|gb|ACP41234.1| beta-lactamase [Cloning vector pARAn51]
gi|228484705|gb|ACQ43933.1| beta-lactamase [cloning vector pHC01]
gi|228484724|gb|ACQ43948.1| beta-lactamase [cloning vector pHC08]
gi|228484729|gb|ACQ43952.1| beta-lactamase [cloning vector pHC09]
gi|228484734|gb|ACQ43956.1| beta-lactamase [cloning vector pHC10]
gi|237652099|gb|ACR08727.1| beta-lactamase [Transient expression vector pXSN]
gi|237652102|gb|ACR08729.1| beta-lactamase [Transient expression vector pXUN]
gi|237652105|gb|ACR08731.1| beta-lactamase [Transient expression vector pXSN-FLAG]
gi|237652108|gb|ACR08733.1| beta-lactamase [Transient expression vector pXUN-FLAG]
gi|237652111|gb|ACR08735.1| beta-lactamase [Transient expression vector pXSN-HA]
gi|237652114|gb|ACR08737.1| beta-lactamase [Transient expression vector pXUN-HA]
gi|237652117|gb|ACR08739.1| beta-lactamase [Transient expression vector pXSN-Myc]
gi|237652120|gb|ACR08741.1| beta-lactamase [Transient expression vector pXUN-Myc]
gi|237652123|gb|ACR08743.1| beta-lactamase [Transient expression vector pX-DG]
gi|237652126|gb|ACR08745.1| beta-lactamase [Transient expression vector pX-DR]
gi|237652130|gb|ACR08748.1| beta-lactamase [Transient expression vector pXGUS-P]
gi|237652134|gb|ACR08751.1| beta-lactamase [Transient expression vector pXGFP-P]
gi|238556226|gb|ACR44993.1| beta-lactamase [Cloning vector pHC36]
gi|238556230|gb|ACR44996.1| beta-lactamase [Cloning vector pHC38]
gi|238556234|gb|ACR44999.1| beta-lactamase [Cloning vector pHC40]
gi|238556239|gb|ACR45003.1| beta-lactamase [Cloning vector pHC65]
gi|238556243|gb|ACR45006.1| beta-lactamase [Cloning vector pHC67]
gi|238556247|gb|ACR45009.1| beta-lactamase [Cloning vector pHC68]
gi|238556251|gb|ACR45012.1| beta-lactamase [Cloning vector pHC82]
gi|239583491|gb|ACR82774.1| beta-lactamase [Cloning vector Mini-Tn4001PSpuro]
gi|239819627|gb|ACS28255.1| beta-lactamase [Expression vector pPM2a]
gi|242277420|gb|ACS91922.1| ampicillin resistance protein [Baculovirus expression vector pLM]
gi|242277424|gb|ACS91925.1| ampicillin resistance protein [Baculovirus expression vector
pLM-ITRs]
gi|253558923|gb|ACT32140.1| AmpR [Cloning vector pDONRamp]
gi|254028435|gb|ACT53135.1| beta-lactamase [Cloning vector pGL4.35[luc2P/9XGAL4UAS/Hygro]]
gi|254028439|gb|ACT53138.1| beta-lactamase [Cloning vector pFN26A (BIND) hRluc-neo]
gi|254028444|gb|ACT53142.1| beta-lactamase [Cloning vector pBIND-ER (alpha)]
gi|254028449|gb|ACT53146.1| beta-lactamase [Cloning vector pBIND-GR]
gi|254995966|dbj|BAH86764.1| beta-lactamase [Mammalian expression vector
pC[Delta]E-chimUAAgaCAA21FLucH]
gi|254995971|dbj|BAH86768.1| beta-lactamase [Mammalian expression vector pCInx-hRPSIVCAA21FLuc]
gi|255687927|gb|ACU29448.1| beta-lactamase [Yeast knockout vector pCloneKan1]
gi|255687930|gb|ACU29450.1| beta-lactamase [Yeast knockout vector pCloneBle1]
gi|255710029|gb|ACU30839.1| beta-lactamase [Cloning vector pFloxin-IRES-eGFP]
gi|256384228|gb|ACU78798.1| beta-lactamase TEM (precursor) [Mycoplasma mycoides subsp. capri
str. GM12]
gi|256385060|gb|ACU79629.1| beta-lactamase TEM (precursor) [Mycoplasma mycoides subsp. capri
str. GM12]
gi|256708578|gb|ACV20891.1| beta-lactamase [Bacillus cereus]
gi|257218581|gb|ACV50008.1| AmpR [Centromeric vector YCp85]
gi|257218586|gb|ACV50012.1| AmpR [Centromeric vector YCp80]
gi|257218589|gb|ACV50014.1| AmpR [Episomal vector YEp85]
gi|257218592|gb|ACV50016.1| AmpR [Episomal vector YEp80]
gi|257218596|gb|ACV50019.1| AmpR [Expression vector pTL85]
gi|257218600|gb|ACV50022.1| AmpR [Expression vector pTL80]
gi|257359585|gb|ACV53160.1| beta lactamase [Expression vector pETUA]
gi|257767998|dbj|BAI39423.1| beta-lactamase [Expression vector pTY2b]
gi|258489392|gb|ACV72605.1| beta-lactamase [Cloning vector pmusmtMCS]
gi|258617572|gb|ACV83806.1| beta-lactamase [Physcomitrella transformation vector
pBS108-35SNPT-b]
gi|258642288|gb|ACV85760.1| beta lactamase [Cloning vector pSpark I]
gi|258642290|gb|ACV85761.1| beta lactamase [Cloning vector pSpark II]
gi|258642292|gb|ACV85762.1| beta lactamase [Cloning vector pSpark III]
gi|258642295|gb|ACV85764.1| beta lactamase [Cloning vector pSpark IV]
gi|258642297|gb|ACV85765.1| beta lactamase [Cloning vector pSpark V]
gi|259045722|gb|ACV91304.1| beta-lactamase [Cloning vector pMycoPuro]
gi|259045726|gb|ACV91307.1| beta-lactamase [Cloning vector Mini-Tn4001PStetM]
gi|259490930|gb|ACW82463.1| beta-lactamase [Cloning vector pFB1SB3Aek]
gi|259490933|gb|ACW82465.1| beta-lactamase [Cloning vector pFB1SB3Atev]
gi|259490936|gb|ACW82467.1| beta-lactamase [Cloning vector pFB1SPepB2Atev]
gi|259490939|gb|ACW82469.1| beta-lactamase [Cloning vector pFB1SGFPB2Atev]
gi|260101143|gb|ACX31713.1| beta lactamase [Vector pwFRT-PCS12-bar]
gi|260505639|gb|ACX42262.1| beta-lactamase [Bacterial selection and production vector pMES4]
gi|260505740|gb|ACX42312.1| beta-lactamase [Recombineering donor plasmid pDOC-C]
gi|260505743|gb|ACX42314.1| beta-lactamase [Recombineering donor plasmid pDOC-H]
gi|260505747|gb|ACX42317.1| beta-lactamase [Recombineering donor plasmid pDOC-F]
gi|260505751|gb|ACX42320.1| beta-lactamase [Recombineering donor plasmid pDOC-P]
gi|260505756|gb|ACX42324.1| beta-lactamase [Recombineering donor plasmid pDOC-G]
gi|260779790|gb|ACX50500.1| beta-lactamase [Self-inactivating lentivirus vector
pLV.C-EF1a.cyt-bGal.dCpG]
gi|261865411|gb|ACY01942.1| ampR [HIV whole-genome vector AA1305#18]
gi|262021248|gb|ACY06903.1| beta-lactamase [Poxvirus recombinant transfer vector pSPV-EGFP]
gi|262117762|dbj|BAI47854.1| beta-lactamase [Helper vector pRH210]
gi|262217317|gb|ACY38037.1| beta-lactamase [Expression vector pColdI(tet)]
gi|262217320|gb|ACY38039.1| beta-lactamase [Expression vector pColdII(tet)]
gi|262217323|gb|ACY38041.1| beta-lactamase [Expression vector pColdIII(tet)]
gi|262217326|gb|ACY38043.1| beta-lactamase [Expression vector pColdIV(tet)]
gi|262217329|gb|ACY38045.1| beta-lactamase [Expression vector pColdX(tet)]
gi|262217332|gb|ACY38047.1| beta-lactamase [Expression vector pColdTEV(tet)]
gi|262410748|gb|ACY66810.1| beta-lactamase [Cloning vector pLS975]
gi|262478126|gb|ACY68261.1| beta-lactamase [Integrative vector pBaSysBioII]
gi|268327065|dbj|BAI49506.1| beta-lactamase [Shuttle vector pYN401]
gi|273165291|gb|ACZ97630.1| beta-lactamase [Expression vector pGloSensor-22F cAMP]
gi|273165320|gb|ACZ97633.1| beta-lactamase [Expression vector pGloSensor-21F cAMP]
gi|281022115|gb|ADA13290.1| Amp [Cloning vector pMN10]
gi|282161287|gb|ADA79624.1| ampicillin resistance protein [Escherichia coli]
gi|282161292|gb|ADA79628.1| ampicillin resistance protein [Escherichia coli]
gi|282161294|gb|ADA79629.1| ampicillin resistance protein [Escherichia coli]
gi|282161301|gb|ADA79634.1| ampicillin resistance protein [Escherichia coli]
gi|282952169|emb|CBG37785.1| beta lactamase [Cloning vector pOtox]
gi|282952174|emb|CBG37787.1| beta lactamase [Cloning vector pOt-luc]
gi|283467329|emb|CBI83205.1| beta lactamase [Overexpression vector pTA963]
gi|283467333|emb|CBI83208.1| beta lactamase [Overexpression vector pTA962]
gi|283467338|emb|CBI83212.1| beta lactamase [Overexpression vector pTA929]
gi|283467341|emb|CBI83214.1| beta lactamase [Overexpression vector pTA927]
gi|283467345|emb|CBI83217.1| beta lactamase [Shuttle vector pTA949]
gi|283825293|gb|ADB43102.1| beta-lactamase [Rabies virus-derived expression vector cSPBN-4GFP]
gi|283825297|gb|ADB43105.1| beta-lactamase [Rabies virus-derived expression vector pTIT-N]
gi|283825300|gb|ADB43107.1| beta-lactamase [Rabies virus-derived expression vector pTIT-P]
gi|283825303|gb|ADB43109.1| beta-lactamase [Rabies virus-derived expression vector pTIT-G]
gi|283825306|gb|ADB43111.1| beta-lactamase [Rabies virus-derived expression vector pTIT-L]
gi|283825309|gb|ADB43113.1| beta-lactamase [Expression vector pCAGGS-T7]
gi|288187153|gb|ADC42095.1| AmpR [Cloning vector pDuExAc6]
gi|288191516|gb|ADC44106.1| beta-lactamase [Lentivirus shuttle vector pLV.FLPe.PurR]
gi|288191519|gb|ADC44108.1| beta-lactamase [Lentivirus shuttle vector pLV.FLPe]
gi|289629475|gb|ADD13584.1| beta-galactosidase [Cloning vector pdsRNA]
gi|290563697|gb|ADD38966.1| beta-lactamase [Gene replacement vector pwFRT-PCS12-gat-sacB]
gi|290791121|gb|ADD63341.1| beta-lactamase [Cloning vector pAE1]
gi|291192148|gb|ADD83136.1| beta-lactamase [Candida integrating/Saccharomyces episomal vector
CIp10-2my]
gi|291192152|gb|ADD83139.1| beta-lactamase [Candida integrating/Saccharomyces episomal vector
CIp20-2my]
gi|291192156|gb|ADD83142.1| beta-lactamase [Candida integrating/Saccharomyces episomal vector
CIp30-2my]
gi|291361504|gb|ADD98905.1| beta-lactamase precursor [Cloning vector pEF-F3-EGFP-F3-mcs]
gi|291587253|gb|ADE19328.1| bla [Tri-shuttle cloning vector pmycYACTn]
gi|291587259|gb|ADE19333.1| bla [Tri-shuttle cloning vector MiniTn-Puro-JCVI-1.7]
gi|292601744|gb|ADE33911.1| beta-lactamase [Broad host range shuttle vector pPMQAK1]
gi|293339850|gb|ADE44156.1| beta-lactamase [Cloning vector pZK18S/T]
gi|293628577|dbj|BAJ04916.1| ampicillin resistance protein [Cloning vector pTip-istAB-sacB]
gi|294653622|gb|ADF28643.1| ampicillin resistant protein [Cloning vector pBac9-PolhEKA]
gi|294653640|gb|ADF28652.1| beta-lactamase [Expression vector pCDS-At]
gi|294847566|gb|ADF43790.1| Bla [cloning vector pAB32]
gi|294847568|gb|ADF43791.1| Bla [cloning vector pAB34]
gi|294861860|gb|ADF45589.1| beta-lactamase [Expression vector pYM70]
gi|295126634|gb|ADF80260.1| beta-lactamase [Cloning vector pPM7g]
gi|296455346|gb|ADH21581.1| beta-lactamase TEM (precursor) [synthetic Mycoplasma mycoides
JCVI-syn1.0]
gi|300432110|gb|ADK12946.1| beta lactamase [Fluorescent tagging vector pUC57-Ps12-tag-CFP]
gi|300432113|gb|ADK12948.1| beta lactamase [Fluorescent tagging vector pUC57-Ps12-turbo-RFP]
gi|300432116|gb|ADK12950.1| beta lactamase [Fluorescent tagging vector pUC57-PS12-turbo-yfp]
gi|301341616|gb|ADK73497.1| bla [GFP expression vector pHapII]
gi|302749841|gb|ADL66929.1| beta-lactamase [Cloning vector pBKS::zeo-ID-hyg]
gi|304282219|gb|ADM21211.1| beta lactamase [Expression shuttle vector pIMB4]
gi|304561273|gb|ADM43595.1| AmpR [Cloning vector pSK485]
gi|305387935|gb|ADM52298.1| beta-lactamase [Cloning vector pZK18S]
gi|306450677|gb|ADM88583.1| beta-lactamase [Plant binary vector pXNS1pat-Strep]
gi|306450680|gb|ADM88585.1| beta-lactamase [Plant binary vector pXNS2pat-Strep]
gi|306450683|gb|ADM88587.1| beta-lactamase [Plant binary vector pXS1pat-Strep]
gi|306450686|gb|ADM88589.1| beta-lactamase [Plant binary vector pXS2pat-Strep]
gi|306491147|gb|ADM95142.1| ampicillin resistance determinant [Cloning vector pGFPbglS]
gi|306491155|gb|ADM95148.1| ampicillin resistance determinant [Cloning vector pYFPbglS]
gi|306491163|gb|ADM95154.1| ampicillin resistance determinant [Cloning vector pCFPbglS]
gi|307090022|gb|ADN27524.1| beta-lactamase [HaloTag control vector]
gi|307639796|gb|ADN83669.1| bla gene-Ap(r) [Wheat transformation vector pghp8.1]
gi|307639798|gb|ADN83670.1| bla gene-Ap(r) [Wheat transformation vector pGhp-omega/alpha/beta]
gi|307639800|gb|ADN83671.1| bla gene-Ap(r) [Wheat transformation vector pDhp-omega/alpha/beta]
gi|307696842|gb|ADN85857.1| beta-lactamase [Phagemid vector pSFMI-lib]
gi|307696846|gb|ADN85860.1| beta-lactamase [Phagemid vector pSFMI-pro-lib]
gi|307743214|emb|CBW31011.1| ampicillin resistance protein [Cloning vector for bidirectional
expression pPMV]
gi|309274419|gb|ADO63835.1| beta-lactamase [Cloning vector pwFRT-pheS-gat]
gi|309400218|gb|ADO79535.1| beta-lactamase [Expression vector pSB3941]
gi|309753681|gb|ADO85844.1| beta-lactamase precursor [cloning vector pEFFS-sigHA]
gi|311120217|gb|ADP69177.1| beta-lactamase [pGREG expression vector pGREG505-C]
gi|311120221|gb|ADP69180.1| beta-lactamase [pGREG expression vector pGREG505-G]
gi|311120225|gb|ADP69183.1| beta-lactamase [pGREG expression vector pGREG505-T]
gi|312191079|gb|ADQ43425.1| beta-lactamase [Cloning vector pBB-GFP]
gi|312191082|gb|ADQ43427.1| beta-lactamase [Cloning vector pBB-CmR-ccdB]
gi|312618308|gb|ADR00306.1| ampicillin resistance protein [Cloning vector pSIM1]
gi|312618314|gb|ADR00311.1| ampicillin resistance protein [Cloning vector pSIM3]
gi|313507426|gb|ADR65119.1| beta-lactamase [Reporter vector pFila]
gi|313649572|gb|EFS13999.1| beta-lactamase family protein [Shigella flexneri 2a str. 2457T]
gi|313798150|gb|ADR82071.1| beta-lactamase [RNA interference vector pBSK-Gus]
gi|313798184|gb|ADR82072.1| beta-lactamase [RNA interference vector pBSK-Intron]
gi|315075635|gb|ADT78589.1| AmpR [piggyBac cloning vector pHomeT-1-R]
gi|315075641|gb|ADT78594.1| AmpR [piggyBac cloning vector pHomeD-B2-SCE-R]
gi|315419253|gb|ADU15674.1| beta-lactamase [Yeast tagging vector pFA6a-URA3-kanMX6]
gi|315435103|gb|ADU18047.1| ampicillin resistance protein [Expression vector pAttR-YFP-2xHA]
gi|316997256|dbj|BAJ52723.1| ampicillin resistant protein [Yeast expression vector pSU9]
gi|316997259|dbj|BAJ52725.1| ampicillin resistant protein [Yeast expression vector pSU14]
gi|317447096|emb|CBX26421.1| beta-lactamase [Binary vector pAMARENA]
gi|317487577|gb|ADV31343.1| beta-lactamase [Cloning vector pBSk-MP]
gi|317487579|gb|ADV31344.1| beta-lactamase [Cloning vector pBSk-CP]
gi|317487581|gb|ADV31345.1| beta-lactamase [Cloning vector pBSk-AC2]
gi|317487583|gb|ADV31346.1| beta-lactamase [Cloning vector pBSk-BV4]
gi|317487585|gb|ADV31347.1| beta-lactamase [Cloning vector pBSk-BC4]
gi|318064866|gb|ADV36643.1| beta-lactamase [RNA interference vector pIBB103]
gi|318104940|gb|ADV41494.1| beta-lactamase [Cloning vector pNO:luc]
gi|319759852|gb|ADV71606.1| beta-lactamase [Cloning vector pBAC-FB]
gi|319759855|gb|ADV71608.1| beta-lactamase [Cloning vector pBAC-FC]
gi|320019966|gb|ADV94952.1| beta-lactamase TEM [Bacillus subtilis BSn5]
gi|320090173|gb|ADW08738.1| beta-lactamase [Expression vector pKLCF-n]
gi|320090176|gb|ADW08740.1| beta-lactamase [Expression vector pKLCF-c]
gi|322392872|gb|ADW95857.1| beta-lactamase [Gene deletion vector pDGO-01]
gi|323175358|gb|EFZ60959.1| beta-lactamase family protein [Escherichia coli LT-68]
gi|323187768|gb|EFZ73067.1| beta-lactamase family protein [Escherichia coli RN587/1]
gi|323482837|gb|ADX86836.1| beta-lactamase [Expression vector LMP-1]
gi|325462541|gb|ADZ15151.1| ampiciliin resistance protein [Reporter vector pHonda1]
gi|325559598|gb|ADZ30882.1| beta-lactamase [MoClo level 1 destination vector pL1F-1]
gi|325559601|gb|ADZ30884.1| beta-lactamase [MoClo level 1 destination vector pL1R-1]
gi|325559611|gb|ADZ30892.1| beta-lactamase [MoClo end-linker vector pELE-1]
gi|325559613|gb|ADZ30893.1| beta-lactamase [MoClo end-linker vector pELB-1]
gi|325559615|gb|ADZ30894.1| beta-lactamase [MoClo end-linker vector pELR-1]
gi|325650940|emb|CCA29761.1| ampicillin resistance [Cloning vector pgalK-Kn]
gi|325656977|gb|ADZ38981.1| beta-lactamase [Transformation and cloning vector pVCC]
gi|325965629|gb|ADZ46397.1| beta-lactamase [Lux single copy cloning vector pMH31]
gi|326322094|gb|ADZ54045.1| beta-lactamase [PCR amplification vector pCLF2]
gi|326322097|gb|ADZ54047.1| beta-lactamase [PCR amplification vector pCLF1]
gi|326370965|gb|ADZ56697.1| beta lactamase [Baculovirus expression/transfer vector pFB-ZB]
gi|327176816|gb|AEA29836.1| beta-lactamase [Escherichia-Pseudomonas shuttle vector
pCon2(3)-Zeo]
gi|327176818|gb|AEA29837.1| beta-lactamase [Expression vector pCon4]
gi|327176821|gb|AEA29839.1| beta-lactamase [Expression vector pCon5]
gi|327176827|gb|AEA29844.1| beta-lactamase [Escherichia-Pseudomonas shuttle vector pCon2(3)]
gi|327176832|gb|AEA29848.1| beta-lactamase [Escherichia-Pseudomonas shuttle vector
pCon2(3)-Kan]
gi|327176834|gb|AEA29849.1| beta-lactamase [Cloning vector pGBT-PX]
gi|327176837|gb|AEA29851.1| beta-lactamase [Cloning vector pGBT-R14]
gi|327176840|gb|AEA29853.1| beta-lactamase [Cloning vector pGBT-R15]
gi|327176843|gb|AEA29855.1| beta-lactamase [Cloning vector pGBT-R16]
gi|327176846|gb|AEA29857.1| beta-lactamase [Cloning vector pGBT-RP2]
gi|327176850|gb|AEA29860.1| beta-lactamase [Cloning vector pT3TS-Cre]
gi|327176853|gb|AEA29862.1| beta-lactamase [Cloning vector pT3TS-Tol2]
gi|328795282|emb|CBZ41582.1| beta-lactamase [Cloning vector pDBR]
gi|331687716|gb|AED88255.1| AmpR [Expression vector pMetYC_GW]
gi|331687733|gb|AED88269.1| AmpR [Expression vector NX32_GW]
gi|331687738|gb|AED88273.1| AmpR [Expression vector NX33_GW]
gi|331687743|gb|AED88277.1| AmpR [Expression vector NWTX_GW]
gi|331687748|gb|AED88281.1| AmpR [Expression vector XNWT_GW]
gi|332143621|dbj|BAK19611.1| beta lactamase [Gateway vector pUGW55]
gi|332144393|dbj|BAK19615.1| beta lactamase [Gateway vector pUGW60]
gi|332144397|dbj|BAK19618.1| beta lactamase [Gateway vector pUGW61]
gi|332144402|dbj|BAK19622.1| beta lactamase [Gateway vector pGWnY]
gi|332144406|dbj|BAK19625.1| beta lactamase [Gateway vector pnYGW]
gi|332144410|dbj|BAK19628.1| beta lactamase [Gateway vector pGWcY]
gi|332144706|dbj|BAK19514.1| beta lactamase [Gateway vector pUGW0]
gi|332144710|dbj|BAK19517.1| beta lactamase [Gateway vector pUGW1]
gi|332144714|dbj|BAK19520.1| beta lactamase [Gateway vector pUGW2]
gi|332144719|dbj|BAK19524.1| beta lactamase [Gateway vector pUGW3]
gi|332144724|dbj|BAK19528.1| beta lactamase [Gateway vector pUGW4]
gi|332144729|dbj|BAK19532.1| beta lactamase [Gateway vector pUGW5]
gi|332144733|dbj|BAK19535.1| beta lactamase [Gateway vector pUGW6]
gi|332144737|dbj|BAK19538.1| beta lactamase [Gateway vector pUGW8]
gi|332144741|dbj|BAK19541.1| beta lactamase [Gateway vector pUGW9]
gi|332144745|dbj|BAK19544.1| beta lactamase [Gateway vector pUGW11]
gi|332144749|dbj|BAK19547.1| beta lactamase [Gateway vector pUGW12]
gi|332144753|dbj|BAK19550.1| beta lactamase [Gateway vector pUGW14]
gi|332144757|dbj|BAK19553.1| beta lactamase [Gateway vector pUGW15]
gi|332144761|dbj|BAK19556.1| beta lactamase [Gateway vector pUGW17]
gi|332144765|dbj|BAK19559.1| beta lactamase [Gateway vector pUGW18]
gi|332144769|dbj|BAK19562.1| beta lactamase [Gateway vector pUGW20]
gi|332144773|dbj|BAK19565.1| beta lactamase [Gateway vector pUGW21]
gi|332144777|dbj|BAK19568.1| beta lactamase [Gateway vector pUGW23]
gi|332144781|dbj|BAK19571.1| beta lactamase [Gateway vector pUGW24]
gi|332144785|dbj|BAK19574.1| beta lactamase [Gateway vector pUGW26]
gi|332144789|dbj|BAK19577.1| beta lactamase [Gateway vector pUGW27]
gi|332144794|dbj|BAK19581.1| beta lactamase [Gateway vector pUGW33]
gi|332144799|dbj|BAK19585.1| beta lactamase [Gateway vector pUGW35]
gi|332144803|dbj|BAK19588.1| beta lactamase [Gateway vector pUGW41]
gi|332144807|dbj|BAK19591.1| beta lactamase [Gateway vector pUGW42]
gi|332144811|dbj|BAK19594.1| beta lactamase [Gateway vector pUGW44]
gi|332144815|dbj|BAK19597.1| beta lactamase [Gateway vector pUGW45]
gi|332144820|dbj|BAK19601.1| beta lactamase [Gateway vector pUGW51]
gi|332144824|dbj|BAK19604.1| beta lactamase [Gateway vector pUGW52]
gi|332144829|dbj|BAK19608.1| beta lactamase [Gateway vector pUGW54]
gi|332144935|dbj|BAK19631.1| beta lactamase [Gateway vector pcYGW]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|218460577|ref|ZP_03500668.1| putative D-alanyl-D-alanine carboxypeptidase (penicillin-binding
protein) [Rhizobium etli Kim 5]
Length = 219
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTD--- 269
DG+KTG+T ASGFN+V++ G++ ++ V+LG +R+ A+LL +
Sbjct: 1 MDGIKTGYTNASGFNLVSAVRDGNRRVVGVVLGGRTARSRDAKMAALLDRYLGRASSSGG 60
Query: 270 -RKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKESH 319
R + K+ + + + ++ + + + + A D
Sbjct: 61 ARLVASVGAKEAVEVASAADASDVPVPLNAPRPADDLASKSLAYADDAVVP 111
>gi|37575117|gb|AAQ93491.1| class A beta-lactamase TEM-124 [Morganella morganii]
Length = 285
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 13/163 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDH 49
++ F V + + P + ET Y LD N+G ++ P+
Sbjct: 3 IKHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEE 62
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V S + + L I S+N + MT+
Sbjct: 63 RFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCS 122
Query: 110 LLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSAT 150
I S N A + ++ ++ F+ +M + L
Sbjct: 123 AAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEP 165
>gi|48734422|gb|AAT46413.1| beta-lactamase TEM-109 [Escherichia coli]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|16798376|gb|AAL29436.1|AF427130_1 inhibitor-resistant beta-lactamase TEM-84 [Escherichia coli]
Length = 286
Score = 55.4 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 80/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
+ + I VI G+ + R++ A +
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERDRQIAEI 278
>gi|154263799|ref|YP_001409239.1| b-lactamase [Escherichia sp. Sflu5]
gi|4545267|gb|AAD22468.1|AF121783_2 beta-lactamase [Expression vector pARA13]
gi|6010636|gb|AAF01199.1|AF179893_1 beta-lactamase [Cloning vector pLM53]
gi|9022391|gb|AAF82362.1|AF271663_1 beta-lactamase [Cloning vector pLDR9]
gi|11934666|gb|AAG41769.1|AF187995_1 Bla [Promoter probe vector pJB785TT]
gi|11934670|gb|AAG41772.1|AF187996_1 Bla [Promoter probe vector pPR9TT]
gi|13160950|gb|AAK13423.1|AF320510_1 Bla [Promoter probe vector pJB785TTKm1]
gi|45615|emb|CAA33304.1| unnamed protein product [synthetic construct]
gi|208142|gb|AAA73059.1| gene bla (Amp-r) [unidentified cloning vector]
gi|208903|gb|AAA72809.1| beta-lactamase [synthetic construct]
gi|208989|gb|AAA72356.1| beta-lactamase [unidentified cloning vector]
gi|209068|gb|AAA72884.1| beta-lactamase [unidentified cloning vector]
gi|209520|gb|AAA72073.1| beta-lactamase [unidentified cloning vector]
gi|209527|gb|AAA72077.1| beta-lactamase [unidentified cloning vector]
gi|1658407|gb|AAB51669.1| beta-lactamase [Cloning vector pJB3]
gi|2293123|gb|AAB68653.1| beta-lactamase [Cloning vector pJG4-5]
gi|2343027|gb|AAB67678.1| beta-lactamase [Cloning vector pJB3Cm6]
gi|2343032|gb|AAB67682.1| beta-lactamase [Cloning vector pJB3Km1]
gi|2343038|gb|AAB67687.1| beta-lactamase [Cloning vector pJB3Tc20]
gi|2343043|gb|AAB67691.1| beta-lactamase [Cloning vector pJB321]
gi|2343049|gb|AAB67696.1| beta-lactamase [Expression vector pJB137]
gi|2343053|gb|AAB67699.1| beta-lactamase [Expression vector pJB653]
gi|2576370|gb|AAB82310.1| beta-lactamase [Expression vector pJB655]
gi|2576374|gb|AAB82313.1| beta-lactamase [Expression vector pJB658]
gi|2576378|gb|AAB82316.1| beta-lactamase [Expression vector pJB864]
gi|3320601|gb|AAC83653.1| beta-lactamase [Integrational vector pMUTIN2]
gi|3892177|gb|AAC78291.1| beta-lactamase [Expression vector pKIL-HIS3]
gi|4545275|gb|AAD22474.1| beta-lactamase [Expression vector pCY215]
gi|4585225|gb|AAD25334.1| beta-lactamase [Cloning vector pLM10]
gi|5326972|emb|CAB46251.1| beta-lactamase [Cloning vector pYanni1]
gi|5326976|emb|CAB46254.1| beta-lactamase [Cloning vector pYanni2]
gi|5327021|emb|CAB46257.1| beta-lactamase [Cloning vector pYanni3]
gi|5327025|emb|CAB46260.1| beta-lactamase [Cloning vector pYanni4]
gi|5327030|emb|CAB46264.1| beta-lactamase [Cloning vector pYanni5]
gi|6009636|dbj|BAA85000.1| beta-lactamase [Expression vector pLED-HB]
gi|6457352|gb|AAF09489.1| beta lactamase [Cloning vector pBgal]
gi|7649701|dbj|BAA94846.1| beta-lactamase [Retroviral vector pCXbsr]
gi|7649704|dbj|BAA94848.1| beta-lactamase [Retroviral vector pCXneo]
gi|9587162|gb|AAF89181.1| beta-lactamase [Cloning vector pBIND]
gi|10945111|emb|CAC14210.1| beta-lactamase [synthetic construct]
gi|13623802|dbj|BAB41066.1| beta-lactamhydrolase [Expression vector pLEAD4]
gi|13623805|dbj|BAB41068.1| beta-lactamhydrolase [Expression vector pLEAD5]
gi|15149222|gb|AAK85196.1| beta-lactamase [Expression vector pBGH]
gi|19572270|emb|CAD27361.1| beta-lactamase [Cloning vector pHK11-bla]
gi|26449190|dbj|BAC41723.1| beta-lactamase [Retroviral vector pCX4bsr]
gi|26449193|dbj|BAC41725.1| beta-lactamase [Retroviral vector pCX4neo]
gi|26449196|dbj|BAC41727.1| beta-lactamase [Retroviral vector pCX4pur]
gi|26449199|dbj|BAC41729.1| beta-lactamase [Retroviral vector pCX4hyg]
gi|26449202|dbj|BAC41731.1| beta-lactamase [Retroviral vector pCX4bleo]
gi|26449205|dbj|BAC41733.1| beta-lactamase [Retroviral vector pCX4.1hisD]
gi|28849078|gb|AAO47697.1| b-lactamase [expression vector pT7-5]
gi|31745706|gb|AAP57186.1| beta-lactamase [Cosmid vector pRR54]
gi|37929973|gb|AAP74485.1| Bla [Cloning vector pKZ14]
gi|37929984|gb|AAP74487.1| Bla [Cloning vector pKZ20]
gi|37930023|gb|AAP74495.1| Bla [Cloning vector pLZ42]
gi|41584264|gb|AAS09822.1| beta-lactamase [Cloning vector P-element_XP]
gi|45826068|gb|AAS77678.1| Bla beta lactamase [Shuttle vector pELS100]
gi|60396876|gb|AAX19662.1| beta lactamase [Expression vector pT7RS]
gi|74231242|gb|ABA00718.1| beta-lactamase [Expression vector pBAD322]
gi|84782118|gb|ABC61530.1| Bla [VEEV replicon vector YFV-C2]
gi|84782121|gb|ABC61532.1| Bla [VEEV replicon vector YFV-C1]
gi|84782124|gb|ABC61534.1| Bla [VEEV replicon vector YFV-C2]
gi|84782127|gb|ABC61536.1| Bla [VEEV replicon vector YFV-C2opt]
gi|84782130|gb|ABC61538.1| Bla [VEEV replicon vector YFV-C3opt-NS2mut]
gi|84782133|gb|ABC61540.1| Bla [VEEV replicon vector YFV-C2opt-NS2mut]
gi|84782136|gb|ABC61542.1| Bla [VEEV replicon vector YFV-C3opt]
gi|117581999|gb|ABK41444.1| bla [YAC construction vector pRML1]
gi|118200855|gb|ABK79309.1| ampicillin resistance [Cloning/transgenesis vector pUAST-C5]
gi|129560437|dbj|BAF48774.1| beta-lactamase [Retroviral vector pCX4gfp*]
gi|129560440|dbj|BAF48776.1| beta-lactamase [Retroviral vector pCX4redEX*]
gi|148578111|emb|CAN86931.1| b-lactamase [Escherichia sp. Sflu5]
gi|158348100|gb|ABW37356.1| beta-lactamase [Cloning vector pEZY45]
gi|163955598|gb|ABY49797.1| AmpR [Cloning vector pWIZdir]
gi|169639577|gb|ACA60873.1| beta-lactamase [phagemid cloning vector pA2]
gi|172053655|gb|ACB70964.1| bla [Cloning vector L071 RRI-Green]
gi|172053658|gb|ACB70966.1| bla [Cloning vector L087 RRI-Red]
gi|207091330|gb|ACI23256.1| beta-lactamase [Retroviral expression vector L149]
gi|270064175|gb|ACZ60056.1| beta-lactamase [shuttle vector pTET15]
gi|312274862|gb|ADQ57462.1| beta-lactamase [Shuttle vector pKM244]
Length = 286
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|7595231|gb|AAF64386.1|AF132290_1 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
gi|195976047|gb|ACG63555.1| beta-lactamase SHV-18 [Acinetobacter baumannii]
Length = 286
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----------LPYYTLLDTNTGHVIAENYPDH 49
MR F + I + + + + + +D +G + D
Sbjct: 1 MRYFRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGSVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AAKRGARGIVALLGPNNKAER 253
>gi|82592679|gb|ABB84515.1| extended-spectrum beta-lactamase TEM-147 [Pseudomonas aeruginosa]
Length = 286
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K +V K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSVLPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|166078564|gb|ABY81260.1| beta-lactamase [Escherichia coli]
gi|166078572|gb|ABY81264.1| beta-lactamase [Escherichia coli]
Length = 272
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 14/265 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNK 254
+ + I VI + T ++
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDE 270
>gi|166078560|gb|ABY81258.1| beta-lactamase [Escherichia coli]
gi|218175575|gb|ACK75718.1| beta-lactamase TEM-1 [Escherichia coli]
Length = 276
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 14/265 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNK 254
+ + I VI + T ++
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDE 270
>gi|166078558|gb|ABY81257.1| beta-lactamase [Escherichia coli]
Length = 272
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 14/265 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNK 254
+ + I VI + T ++
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDE 270
>gi|166078554|gb|ABY81255.1| beta-lactamase [Escherichia coli]
Length = 273
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 14/265 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNK 254
+ + I VI + T ++
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDE 270
>gi|166078552|gb|ABY81254.1| beta-lactamase [Escherichia coli]
gi|166078556|gb|ABY81256.1| beta-lactamase [Escherichia coli]
gi|166078562|gb|ABY81259.1| beta-lactamase [Escherichia coli]
gi|166078566|gb|ABY81261.1| beta-lactamase [Escherichia coli]
gi|166078568|gb|ABY81262.1| beta-lactamase [Escherichia coli]
gi|166078570|gb|ABY81263.1| beta-lactamase [Escherichia coli]
gi|166078574|gb|ABY81265.1| beta-lactamase [Escherichia coli]
gi|166078584|gb|ABY81270.1| beta-lactamase [Escherichia coli]
Length = 271
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 14/265 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNK 254
+ + I VI + T ++
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDE 270
>gi|166078550|gb|ABY81253.1| beta-lactamase [Escherichia coli]
gi|166078580|gb|ABY81268.1| beta-lactamase [Escherichia coli]
gi|166078590|gb|ABY81273.1| beta-lactamase [Escherichia coli]
Length = 274
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 14/265 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNK 254
+ + I VI + T ++
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDE 270
>gi|112785106|gb|ABI20743.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
Length = 286
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 14/265 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNK 254
+ + I VI + T ++
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDE 270
>gi|58200709|gb|AAW66604.1| beta-lactamase TEM-11 [Proteus mirabilis]
Length = 286
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|1045659|gb|AAC32891.1| beta-lactamase TEM-28 [Escherichia coli]
Length = 286
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|3328184|gb|AAC73065.1| beta lactamase precursor [Cloning vector pQE30NST]
gi|13488584|gb|AAK26193.1| beta-lactamase [Cloning vector pQStrep2]
gi|34421984|gb|AAQ68222.1| beta-lactamase [Expression vector pPANK]
gi|37223185|gb|AAQ90186.1| beta lactamase precursor [Cloning vector pQE-30NAST-attB]
gi|37575402|gb|AAQ93653.1| beta-lactamase [Expression vector pAT222]
gi|37575407|gb|AAQ93657.1| beta-lactamase [Expression vector pAT223]
gi|37575411|gb|AAQ93660.1| beta-lactamase [Expression vector pAT224]
gi|37575415|gb|AAQ93663.1| beta-lactamase [Expression vector pQEMBP]
gi|37575419|gb|AAQ93666.1| beta-lactamase [Expression vector pAT194]
Length = 286
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/274 (14%), Positives = 78/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQAAMDERNRQIAEIG 279
>gi|3281932|emb|CAA76796.1| beta-lactamase class A [Escherichia coli]
gi|14588995|emb|CAC43180.1| TEM-29 ES-beta-lactamase [Escherichia coli]
gi|82468437|gb|ABB76656.1| extended-spectrum beta-lactamase TEM-29 [Pseudomonas aeruginosa]
Length = 286
Score = 55.0 bits (130), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|183584860|gb|ACC63898.1| beta-lactamase TEM-166 [synthetic construct]
Length = 286
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILEGFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGTGKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|16331861|ref|NP_442589.1| hypothetical protein slr0121 [Synechocystis sp. PCC 6803]
gi|1001780|dbj|BAA10659.1| slr0121 [Synechocystis sp. PCC 6803]
Length = 495
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/241 (13%), Positives = 72/241 (29%), Gaps = 8/241 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
S A Y +D + G + AS K+ A F + + K L
Sbjct: 222 TSKAPAINSYSYF-IDVDNGQFANAK-GETQLPAASTIKIPVAIAFFEAVDQGKIQLHEE 279
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ ++++ + G + +V I+ A ++ + +N
Sbjct: 280 LPLTQDVIVGEAGTMQYDVGKRSSYPAL---EVVTKMIVISDNTATNMLIKRLGGKEFLN 336
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+ + T N ++ + T+ +D+A+L +++ + ++ K
Sbjct: 337 QRFQAWQMPQTKINNYLPDLEGTNTTSPQDLALLLVKLQGGELLSLKSRDRLLGIMQQTK 396
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
KTG + + + + +L N V+ L
Sbjct: 397 TRTLLPQGLEPDAQIAHKTGDIGTVLGDAGIVDMPNGKRYVGAVL---ATRPHNDVAGRL 453
Query: 260 L 260
L
Sbjct: 454 L 454
>gi|239617263|ref|YP_002940585.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Kosmotoga olearia TBF 19.5.1]
gi|239506094|gb|ACR79581.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Kosmotoga olearia TBF 19.5.1]
Length = 380
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT---LLDTNTGHVIAENYPDHPWNPASLT 57
M++ + +I + + ++IF + + + D TG +I + + PAS+T
Sbjct: 1 MKKVIFLIFILLTTSIFGDTVRELVDNFDGFVGIYVEDIETGEIITQYNATKLFTPASVT 60
Query: 58 KLMTAYVVFSF 68
KL T
Sbjct: 61 KLFTLLAALEN 71
>gi|40317280|gb|AAR84298.1| TEM-132 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
gi|58430778|dbj|BAD89186.1| TEM-derived extended-spectrum beta-lactamase [Klebsiella
pneumoniae]
gi|58430780|dbj|BAD89187.1| TEM-derived extended-spectrum beta-lactamase [Escherichia coli]
Length = 286
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAVPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|208657245|gb|ACI29961.1| TEM-1 beta-lactamase [Escherichia coli]
gi|208657247|gb|ACI29962.1| TEM-1 beta-lactamase [Escherichia coli]
gi|208657249|gb|ACI29963.1| TEM-1 beta-lactamase [Escherichia coli]
gi|208657251|gb|ACI29964.1| TEM-1 beta-lactamase [Escherichia coli]
gi|208657253|gb|ACI29965.1| TEM-1 beta-lactamase [Escherichia coli]
Length = 267
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/254 (15%), Positives = 72/254 (28%), Gaps = 14/254 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 5 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 65 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 124
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 125 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 184
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 185 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 244
Query: 231 SAIQGDQS-LIAVI 243
+ + I VI
Sbjct: 245 ALGPDGKPSRIVVI 258
>gi|166078586|gb|ABY81271.1| beta-lactamase [Escherichia coli]
Length = 264
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/254 (15%), Positives = 72/254 (28%), Gaps = 14/254 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI 243
+ + I VI
Sbjct: 246 ALGPDGKPSRIVVI 259
>gi|166078578|gb|ABY81267.1| beta-lactamase [Escherichia coli]
gi|166078582|gb|ABY81269.1| beta-lactamase [Escherichia coli]
Length = 268
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/254 (15%), Positives = 72/254 (28%), Gaps = 14/254 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI 243
+ + I VI
Sbjct: 246 ALGPDGKPSRIVVI 259
>gi|40737710|gb|AAR89358.1| beta-lactamase TEM-127 [Escherichia coli]
Length = 286
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDNVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|71273528|emb|CAJ13634.1| TEM-1 beta-lactamase [Escherichia coli]
gi|166078588|gb|ABY81272.1| beta-lactamase [Escherichia coli]
Length = 269
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/254 (15%), Positives = 72/254 (28%), Gaps = 14/254 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI 243
+ + I VI
Sbjct: 246 ALGPDGKPSRIVVI 259
>gi|21388252|emb|CAC85661.1| TEM-94 ES-beta-lactamase [Escherichia coli]
Length = 286
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 84/273 (30%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
+ + ++ + + G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYMTGSQATMDERNRQIAEI 278
>gi|14164988|gb|AAK55329.1|AF361302_15 inactive beta-lactamase [Cloning vector pALTER(R)*-MAX]
gi|595993|gb|AAA56769.1| truncated beta-lactamase gene with a 4bp deletion, repaired by
mutagenesis with oligo GTTGCCATTGCTGCAGGCATCGTGGTG
(nucleotides 4573-4595) restoring ampicillin resistance
and PstI site by 4 bp insertion [Cloning vector pSIT]
gi|1197550|gb|AAB39959.1| inactive beta-lactamase [Cloning vector pALTER-Ex1]
Length = 190
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/185 (15%), Positives = 55/185 (29%), Gaps = 13/185 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPQWQQ 185
Query: 171 AILSW 175
++
Sbjct: 186 RCANY 190
>gi|74054890|gb|AAZ95766.1| putative TEM beta lactamase [bacterium RRLBTTh23]
Length = 286
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 78/273 (28%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
+ + I VI G+ RN+ A +
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMEERNRQIAEI 278
>gi|146260180|gb|ABQ14420.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/271 (15%), Positives = 80/271 (29%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ ++ P L+ ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAASCLPVLAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N P + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYPPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|112785110|gb|ABI20745.1| TEM extended-spectrum beta-lactamase [Escherichia coli]
Length = 286
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEEHFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|166157194|emb|CAJ66089.1| beta-lactamase TEM-150 [Escherichia coli]
gi|208970779|gb|ACI32331.1| extended spectrum beta lactamase TEM-150 [Escherichia coli]
gi|208970781|gb|ACI32332.1| extended spectrum beta lactamase TEM-150 [Klebsiella pneumoniae]
gi|208970783|gb|ACI32333.1| extended spectrum beta lactamase TEM-150 [Enterobacter sp.
SP040079]
Length = 286
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + +T Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPDTLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|146260151|gb|ABQ14408.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDMVEYSPVTEKHLTDGMTVRGLCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAEPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|146260134|gb|ABQ14405.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/273 (14%), Positives = 78/273 (28%), Gaps = 18/273 (6%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L + H TT
Sbjct: 121 DNAAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNE--AIPNDEHDTTMPVAMAT 178
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGFTCASGFNIVAS 231
+ R + + ++ K+G I+A+
Sbjct: 179 TLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAA 238
Query: 232 AIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 239 LGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|114386382|gb|ABI74447.1| beta lactamase TEM-152 [Escherichia coli]
Length = 286
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/262 (15%), Positives = 72/262 (27%), Gaps = 25/262 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSG----------- 234
Query: 231 SAIQGDQSLIAVILGALDRNTR 252
A + I LG + +R
Sbjct: 235 -AGKRGSRGIIAALGPDGKPSR 255
>gi|20805894|gb|AAM28884.1|AF506748_1 TEM beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|42525360|gb|AAS18375.1| beta lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 286
Score = 55.0 bits (130), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAELSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + ++ Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTSELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ S + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERSRQIAEIG 279
>gi|325518516|gb|EGC98206.1| D-alanyl-D-alanine endopeptidase [Burkholderia sp. TJI49]
Length = 206
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 58/161 (36%), Gaps = 5/161 (3%)
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ + ++ S N A A++ FV+ MN ++ LG+ THF G+ + +
Sbjct: 41 DMFHIALMSSENRAAAALSRDYPGGRTAFVKAMNREARRLGMRHTHFREPTGL-SPHNVS 99
Query: 166 TARDMAILSWRIKTDFPQYM----HYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
TA D+A L D ++ + + + L KTGF
Sbjct: 100 TAEDLARLVGAAAQDPLIRYFSTDTSTTVRPGDGELLYVNSDPLVRYRRLPIRLQKTGFI 159
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSM 262
SG +V + V+LGA R + + +
Sbjct: 160 NESGHGVVMRMRVKGRRTTVVLLGAPTRAGVSSDAIKIHRW 200
>gi|227462936|gb|ACP18864.1| TEM beta-lactamase [Salmonella enterica subsp. enterica serovar
Infantis]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRGEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|146260138|gb|ABQ14407.1| beta-lactamase [uncultured soil bacterium]
Length = 269
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 38/262 (14%), Positives = 73/262 (27%), Gaps = 14/262 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILGSFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHCSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLTSRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNK 254
+ I VI + T ++
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDE 262
>gi|208244|gb|AAA72841.1| b-lactamase [unidentified cloning vector]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWLEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|331687722|gb|AED88260.1| AmpR [Expression vector XN22_GW]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPXAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|1003002|gb|AAA77064.1| beta-lactamase [Cloning vector pRSQ]
gi|1546042|gb|AAB16840.1| beta-lactamase [Cloning vector pRSQ2-LEU2]
gi|1546047|gb|AAB16844.1| beta-lactamase [Cloning vector pRSQ2-URA3]
gi|2801668|gb|AAC40223.1| beta-lactamase [Cloning vector yGALset986]
gi|6642842|gb|AAF20319.1| beta-lactamase [Yeast two-hybrid vector pCD.1]
gi|6642845|gb|AAF20321.1| beta-lactamase [Yeast two-hybrid vector pCD.2]
gi|6642849|gb|AAF20324.1| beta-lactamase [Yeast two-hybrid vector pC-ACT.1]
gi|6642853|gb|AAF20327.1| beta-lactamase [Yeast two-hybrid vector pC-ACT.2]
gi|37812662|gb|AAR04149.1| beta lactamase [UAS-less reporter vector pMELalpha]
gi|37812675|gb|AAR04158.1| beta lactamase [UAS-less reporter vector pMELalpha2]
gi|38327509|gb|AAR17786.1| beta-lactamase [Cloning vector pPGA89]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 78/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFFHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|15081590|gb|AAK82652.1| beta-lactamase TEM-102 [Plasmid pWW100]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 78/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFVRPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 AVGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|8272638|gb|AAF74292.1|AF264753_1 extended-spectrum beta-lactamase [Escherichia coli]
Length = 277
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 76/265 (28%), Gaps = 14/265 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNK 254
+ + I VI + T ++
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDE 270
>gi|2118167|pir||S60312 extended spectrum beta-lactamase CAZ-7 - Klebsiella pneumoniae
gi|296956|emb|CAA46346.1| extended spectrum beta-lactamase CAZ-7 [Klebsiella pneumoniae]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|41817|emb|CAA41038.1| beta lactamase TEM6 [Escherichia coli]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|116282558|gb|ABJ97318.1| beta-lactamase [Expression vector pAct26mCherry-F]
gi|116282561|gb|ABJ97320.1| beta-lactamase [Expression vector pAct26mRFP-F]
gi|116282565|gb|ABJ97323.1| beta-lactamase [Expression vector pAct26IFN]
gi|116282569|gb|ABJ97326.1| beta-lactamase [Expression vector pAct26CRFB1]
gi|116282573|gb|ABJ97329.1| beta-lactamase [Expression vector pAct26CRFB5]
gi|116282577|gb|ABJ97332.1| beta-lactamase [Expression vector pAct26CRFB6]
gi|298209298|gb|ADI62667.1| beta-lactamase [Cloning vector Crypto RNAi HP-Frame]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 78/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F +M + L A +
Sbjct: 126 SMSDNTAANLLLTTIGGPKELTAFFHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|313586335|gb|ADR71220.1| TEM-183 beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWLIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|146260209|gb|ABQ14432.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPHLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|114386384|gb|ABI74448.1| beta lactamase TEM-151 [Escherichia coli]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 80/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
+ + I VI G+ + R++ A +
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERDRQIAEI 278
>gi|146260186|gb|ABQ14423.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/267 (14%), Positives = 80/267 (29%), Gaps = 7/267 (2%)
Query: 4 FLVIIAMAMLS---NIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
F + +L+ + + Y LD N+G ++ P+ + S K+
Sbjct: 5 FFAAFCLPVLAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 64
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N P + MT+ I S N
Sbjct: 65 LLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYPPVTEKHLTDGMTVRELCSAAITMSDNTA 124
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + + L A + L +
Sbjct: 125 ANLLLTTIGGPKELTAFLHNMGDHATRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLL 184
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 185 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 244
Query: 238 S-LIAVILGALDRNTRNKVSASLLSMG 263
I VI + T ++ + + +G
Sbjct: 245 PSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|163311075|pdb|3BFE|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
gi|163311076|pdb|3BFE|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
gi|163311077|pdb|3BFE|C Chain C, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
gi|163311078|pdb|3BFE|D Chain D, Crystal Structure Of The Class A Beta-Lactamase Sed-1 From
Citrobacter Sedlakii
Length = 262
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 67/237 (28%), Gaps = 11/237 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ V+ D + S +K+MTA V + +L +TI K +
Sbjct: 27 ADNSQVLY--RADERFAMCSTSKVMTAAAVLKQSETHDGILQQKMTIKKADLTNWNPVTE 84
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNLGLSATHFM 153
G+TMTL + S N + F + + +T+ L
Sbjct: 85 KYVGNTMTLAELSAATLQYSDNTAMNKLLAHLGGPGNVTAFARSIGDTTFRLDRKEPELN 144
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + + L D Q+ + A
Sbjct: 145 TAIPGDERDTTSPLAMAKSLRKLTLGDALAGPQRAQLVDWLKGNTTGGQSIRAGLPAHWV 204
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMG 263
G KTG N +A D+ L+ V A R +A +++ G
Sbjct: 205 VGDKTGAGDYGTTNDIAVIWPEDRAPLVLVTYFTQPQQDAKWRKDVLAAAAKIVTEG 261
>gi|13562035|gb|AAK30619.1|AF351241_1 TEM-90 beta-lactamase [Escherichia coli]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTGGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|146260199|gb|ABQ14428.1| beta-lactamase [uncultured soil bacterium]
Length = 271
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPASWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|16973670|gb|AAL32364.1|AF399742_1 beta-lactamase [Cloning vector pSMART]
gi|20301817|gb|AAM15720.1| beta-lactamase [cloning vector pSMART-LC]
gi|22476926|gb|AAM97351.1| beta-lactamase [Cloning vector pEZSeq-Amp]
gi|69048019|gb|AAY99674.1| beta-lactamase [Broad host range vector pBMT-1]
gi|69048101|gb|AAY99688.1| beta-lactamase [Broad host range vector pBT-1]
gi|69048159|gb|AAY99699.1| beta-lactamase [Broad host range vector pBMTB-1]
gi|69048310|gb|AAY99718.1| beta-lactamase [Broad host range vector pBTB-1]
gi|69048378|gb|AAY99734.1| beta-lactamase [Broad host range vector pBMTL-1]
gi|69048448|gb|AAY99748.1| beta-lactamase [Broad host range vector pBTL-1]
gi|89158284|gb|ABD62895.1| beta-lactamase [Cloning vector pJAZZ-KA]
gi|258617726|gb|ACV83856.1| beta-lactamase [Broad host range vector pBTBX-1]
gi|258617753|gb|ACV83877.1| beta-lactamase [Broad host range vector pBMTBX-1]
gi|258617784|gb|ACV83902.1| beta-lactamase [Broad host range vector pBTBXh-1]
gi|309378628|emb|CBX22699.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESLRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLATIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGSLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|146743440|gb|ABQ43167.1| AmpR [Yeast expression vector pNIA-Ca]
gi|146743444|gb|ABQ43170.1| AmpR [Yeast expression vector pNIA-Cb]
gi|146743446|gb|ABQ43171.1| AmpR [Yeast expression vector pNIA-Cc]
Length = 286
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEASPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|325672916|ref|ZP_08152610.1| D-alanyl-D-alanine endopeptidase [Rhodococcus equi ATCC 33707]
gi|325556169|gb|EGD25837.1| D-alanyl-D-alanine endopeptidase [Rhodococcus equi ATCC 33707]
Length = 299
Score = 54.6 bits (129), Expect = 2e-05, Method: Composition-based stats.
Identities = 39/223 (17%), Positives = 82/223 (36%), Gaps = 11/223 (4%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-------KNASEYPPSNSTFKKGST 101
P AS K++TA V +T++ ++ ++ S G
Sbjct: 68 RPRPTASTAKVITALAVLERKPLAPGEDGPTLTMTEADADLYRDYADRGGSAVAVGAGQQ 127
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
++ L +++ SAN++A +A + ++ ++LG+++T
Sbjct: 128 LSEYEMLVGMLLPSANNLADTLAVWAFGSLAEYRSAATQLVRSLGMTSTTVGTDASGFSS 187
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+T +D+ +L+ + + NTN +G G G+KTG T
Sbjct: 188 STTSTVQDLTLLAAAAVRNPVIAEIVARDHATLSGVGVVFNTNSLLGR-PGVVGLKTGTT 246
Query: 222 CASGFNIVASAIQG--DQSLIAVILG-ALDRNTRNKVSASLLS 261
+G + +A G + ++ + G + +A LL
Sbjct: 247 DEAGGVFLFAARVGAAGRLVVGAVQGEGRSAHDAVTRAARLLD 289
>gi|495299|gb|AAC36883.1| TEM-26B beta-lactamase [Klebsiella pneumoniae]
Length = 269
Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/254 (15%), Positives = 72/254 (28%), Gaps = 14/254 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI 243
+ + I VI
Sbjct: 246 ALGPDGKPSRIVVI 259
>gi|257057524|ref|YP_003135356.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Saccharomonospora viridis DSM 43017]
gi|256587396|gb|ACU98529.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Saccharomonospora viridis DSM 43017]
Length = 517
Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMT---AYVVFSFL 69
++D TG + E D PAS TKL+T A +V
Sbjct: 146 VVDPATGTTLWERNADQALAPASTTKLLTSAAALLVLDHD 185
>gi|195954348|gb|ACG58881.1| TEM-116 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 272
Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 75/265 (28%), Gaps = 14/265 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNK 254
+ + I VI + T ++
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDE 270
>gi|1840129|gb|AAB47269.1| beta-lactamase [Expression vector pCal-n-ek]
gi|3834576|gb|AAC71017.1| beta-lactamase [Cloning vector pCALnFLAG]
Length = 286
Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVDASPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|48734424|gb|AAT46414.1| beta-lactamase TEM-125 [Escherichia coli]
Length = 286
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 81/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFLAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MLSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSREPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
+ + I VI G+ + R++ A +
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERDRQIAEI 278
>gi|254967198|gb|ACT97652.1| TEM-168 beta-lactamase [mixed culture bacterium PE_gF3SD01_32]
Length = 286
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIDDKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|146260032|gb|ABQ14377.1| beta-lactamase [uncultured soil bacterium]
gi|146260045|gb|ABQ14382.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 35 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 94
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 95 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 154
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + + L + + Q+ K +
Sbjct: 155 WEPELNEAIPIDERDTTMPVAMATTLRKPLTGELLTLASRQQLIDWMEADKVAGPLLRSA 214
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 215 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|1052964|gb|AAA80669.1| beta-lactamase [Cloning vector YITAG100]
gi|1052968|gb|AAA80672.1| beta-lactamase [Cloning vector YATAG200]
Length = 266
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 71/254 (27%), Gaps = 14/254 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI 243
+ + I VI
Sbjct: 246 ALGPDGKPSRIVVI 259
>gi|146260230|gb|ABQ14440.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 79/269 (29%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWNPASL 56
+ A L ++A+ Y LD N+G ++ P+ + S
Sbjct: 2 LIPFFAAFCLPVFAHPETLAKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMST 61
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V S + + L I S+N + MT+ I S
Sbjct: 62 FKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSD 121
Query: 117 NDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + ++ ++ F+ +M + L A + L
Sbjct: 122 NTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLR 181
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ K + K+G I+A+
Sbjct: 182 KLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGP 241
Query: 235 GDQ--SLIAV-ILGAL-DRNTRNKVSASL 259
+ ++A+ G+ + RN+ A +
Sbjct: 242 DGKPSRIVAIYTTGSQATMDERNRQIAEI 270
>gi|14486653|gb|AAK63223.1| class A beta-lactamase Sed1 [Citrobacter sedlakii]
Length = 295
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 67/237 (28%), Gaps = 11/237 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ V+ D + S +K+MTA V + +L +TI K +
Sbjct: 60 ADNSQVLY--RADERFAMCSTSKVMTAAAVLKQSETHDGILQQKMTIKKADLTNWNPVTE 117
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNLGLSATHFM 153
G+TMTL + S N + F + + +T+ L
Sbjct: 118 KYVGNTMTLAELSAATLQYSDNTAMNKLLAHLGGPGNVTAFARSIGDTTFRLDRKEPELN 177
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + + L D Q+ + A
Sbjct: 178 TAIPGDERDTTSPLAMAKSLRKLTLGDALAGPQRAQLVDWLKGNTTGGQSIRAGLPAHWV 237
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMG 263
G KTG N +A D+ L+ V A R +A +++ G
Sbjct: 238 VGDKTGAGDYGTTNDIAVIWPEDRAPLVLVTYFTQPQQDAKWRKDVLAAAAKIVTEG 294
>gi|11514176|pdb|1FQG|A Chain A, Molecular Structure Of The Acyl-Enzyme Intermediate In
Tem- 1 Beta-Lactamase
Length = 263
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WNPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|146260192|gb|ABQ14426.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 76/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAERG 271
>gi|74422851|gb|ABA06586.1| mutant extended-spectrum beta-lactamase SHV-64 [Klebsiella
pneumoniae]
Length = 286
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVLLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|146259997|gb|ABQ14362.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/271 (14%), Positives = 78/271 (28%), Gaps = 10/271 (3%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + A L ++ + Y LD N+G ++ P+ + S
Sbjct: 1 RLIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|114842972|gb|ABI81768.1| beta-lactamase TEM-157 [Enterobacter cloacae]
Length = 286
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S++ + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQSDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|4731623|gb|AAD28531.1|AF134572_2 beta-lactamase [Cloning vector p34S-Sm2]
gi|4731626|gb|AAD28533.1|AF134573_2 beta-lactamase [Cloning vector p34S-Sm3]
gi|1262901|gb|AAB36663.1| beta-lactamase [Expression vector pEXT20]
gi|3135594|gb|AAC26206.1| beta-lactamase [Cloning vector p34S-Cm]
gi|3135597|gb|AAC26208.1| beta-lactamase [Cloning vector p34S-Gm]
gi|3135600|gb|AAC26210.1| beta-lactamase [Cloning vector p34S-Km]
gi|3135603|gb|AAC26212.1| beta-lactamase [Cloning vector p34S-Sm]
gi|3135606|gb|AAC26214.1| beta-lactamase [Cloning vector p34S-Tc]
gi|3135609|gb|AAC26216.1| beta-lactamase [Cloning vector p34S-Tp]
gi|3777575|gb|AAC64938.1| beta-lactamase [Cloning vector p34S-Cm2]
gi|3777578|gb|AAC64940.1| beta-lactamase [Cloning vector p34S-Km3]
gi|3777581|gb|AAC64942.1| beta-lactamase [Cloning vector p34S-Tp2]
gi|9885347|gb|AAG01407.1| beta-lactamase [Integration vector pVH-2]
gi|50253789|gb|AAT72049.1| beta-lactamase [Promoter-probe vector pXH200]
gi|50253793|gb|AAT72052.1| beta-lactamase [Promoter-probe vector pXH201]
gi|50253797|gb|AAT72055.1| beta-lactamase [Promoter-probe vector pXH202]
gi|50253801|gb|AAT72058.1| beta-lactamase [Promoter-probe vector pXH203]
gi|50253805|gb|AAT72061.1| beta-lactamase [Promoter-probe vector pXH204]
Length = 286
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMP 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|18996298|emb|CAC83818.1| ampicillin resistance protein [Expression vector pEUKA4-crgA]
gi|18996302|emb|CAC83815.1| ampicillin resistance protein [Expression vector pEUKA4-gox1]
gi|29788131|emb|CAD68163.1| beta-lactamase [Cloning vector pEUKA11]
Length = 286
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ + K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWLLADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|2970345|gb|AAC05975.1| beta-lactamase TEM-60 [Providencia stuartii]
Length = 286
Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDPNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMR 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRCALPAGWLIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|50347099|gb|AAT75225.1| beta-lactamase SHV-30 [Enterobacter cloacae]
Length = 286
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/259 (13%), Positives = 69/259 (26%), Gaps = 15/259 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----------LPYYTLLDTNTGHVIAENYPDH 49
MR F + I + + + + + +D +G + D
Sbjct: 1 MRYFRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGSVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG +
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASERGARG 240
Query: 228 IVASAIQGDQ--SLIAVIL 244
IVA ++ ++ + L
Sbjct: 241 IVALLGPNNKAERIVVIYL 259
>gi|6176544|gb|AAF05612.1|AF190693_1 inhibitor-resistant beta-lactamase TEM-78 [Escherichia coli]
Length = 286
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/273 (15%), Positives = 80/273 (29%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRREPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
+ + I VI G+ + R++ A +
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERDRQIAEI 278
>gi|82395024|gb|ABB72432.1| extended spectrum beta-lactamase TEM-144 [Escherichia coli]
Length = 286
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALLAGWFIADKSGAGERGSLGIIE 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|291586291|gb|ADE18898.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Montevideo]
Length = 202
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPA 182
>gi|291586287|gb|ADE18896.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Heidelberg]
Length = 215
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPA 182
>gi|291586275|gb|ADE18890.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Oranienburg]
Length = 248
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPA 182
>gi|291586263|gb|ADE18884.1| TEM-1 beta-lactamase [Escherichia coli]
gi|291586267|gb|ADE18886.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Heidelberg]
gi|291586269|gb|ADE18887.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Heidelberg]
gi|291586271|gb|ADE18888.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Heidelberg]
gi|291586273|gb|ADE18889.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Hadar]
gi|291586277|gb|ADE18891.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Montevideo]
gi|291586279|gb|ADE18892.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Heidelberg]
gi|291586281|gb|ADE18893.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Heidelberg]
gi|291586283|gb|ADE18894.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Heidelberg]
gi|291586285|gb|ADE18895.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Heidelberg]
Length = 255
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPA 182
>gi|291586261|gb|ADE18883.1| TEM-1 beta-lactamase [Escherichia coli]
Length = 256
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPA 182
>gi|12018137|gb|AAG45415.1| TEM-derived extended spectrum beta-lactamase [Escherichia coli]
Length = 286
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPA 182
>gi|552996|gb|AAA32208.1| ampicillinase [Enterobacteria phage f1]
Length = 225
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPA 182
>gi|56463101|gb|AAV91692.1| beta-lactamase TEM [Escherichia coli]
gi|56463103|gb|AAV91693.1| beta-lactamase TEM [Escherichia coli]
gi|56463105|gb|AAV91694.1| beta-lactamase TEM [Escherichia coli]
Length = 221
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPA 182
>gi|146260176|gb|ABQ14418.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/267 (14%), Positives = 76/267 (28%), Gaps = 9/267 (3%)
Query: 6 VIIAMAMLSNIFPFLS-----IAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+A + P + Y LD N+G ++ P+ + S K+
Sbjct: 5 FFVAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 64
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 65 LLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 124
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + L +
Sbjct: 125 ANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLL 184
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 185 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 244
Query: 238 S-LIAVILGALDRNTRNKVSASLLSMG 263
I VI + T ++ + + +G
Sbjct: 245 PSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|28192516|gb|AAN05027.1| TEM-110 beta-lactamase [Klebsiella oxytoca]
Length = 261
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 71/249 (28%), Gaps = 15/249 (6%)
Query: 11 AMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ FP + ET Y LD N+G ++ P+ + S K+
Sbjct: 1 FFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 61 LLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 120
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + A L +
Sbjct: 121 ANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLL 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 181 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 240
Query: 238 --SLIAVIL 244
++ + +
Sbjct: 241 PSRIVVIYM 249
>gi|146260007|gb|ABQ14366.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/267 (15%), Positives = 78/267 (29%), Gaps = 14/267 (5%)
Query: 11 AMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ FP + ET Y LD N+G ++ P+ + S K+
Sbjct: 5 FFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 64
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 65 LLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 124
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + L +
Sbjct: 125 ANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLL 184
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ P Q+ K + K+G I+A+ +
Sbjct: 185 TGELPTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 244
Query: 238 S-LIAVILGALDRNTRNKVSASLLSMG 263
I VI + T ++ + + +G
Sbjct: 245 PSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|75908313|ref|YP_322609.1| penicillin-binding protein, transpeptidase [Anabaena variabilis
ATCC 29413]
gi|75702038|gb|ABA21714.1| Penicillin-binding protein, transpeptidase [Anabaena variabilis
ATCC 29413]
Length = 424
Score = 53.8 bits (127), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/252 (15%), Positives = 77/252 (30%), Gaps = 14/252 (5%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN-ASEYPPS 92
LD TG + + + + AS K +F + + + + ++ + +
Sbjct: 185 LDMETGEYL-DINGEKTFAAASTIKFPILIALFEEIDAGRINPNETLVMRRDLMTGGSGT 243
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
K GS L +++ S N I + L +N ++ GL T
Sbjct: 244 MQYRKAGSKFKLMETASKMMIISDNTATNMIIDRL-----GGKNRLNQRFRSWGLQNTVI 298
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
N G + + T+ +D+ L+ I + + K +
Sbjct: 299 RNLLGDFKGTNKTSPKDLVRLAALISNNKLLSATSNSRVMDIMSRCKNRSLLPVGLGKGA 358
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
KTG + + +A I+ A + + F N+ R
Sbjct: 359 VIAHKTGTLGRVLGDAGIIQTPSGKRYLAGIMVARP----FGDARA---KAFINQVSRLV 411
Query: 273 INYIIKDFYQQN 284
Y+ + +N
Sbjct: 412 YGYLDQPTSARN 423
>gi|146260094|gb|ABQ14394.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHCSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|325924216|ref|ZP_08185775.1| beta-lactamase class A [Xanthomonas gardneri ATCC 19865]
gi|325545297|gb|EGD16592.1| beta-lactamase class A [Xanthomonas gardneri ATCC 19865]
Length = 301
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 66/230 (28%), Gaps = 6/230 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLD+ TG D + S K + A V + + K L + I +
Sbjct: 59 LLDSATGK-HFGQREDERFPMCSTFKFVLAAAVLQRVDQGKLTLAQRVKIRASDMLSHAP 117
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G ++++ + ++ S N A + + F++ + +T
Sbjct: 118 VTERHVGGSLSVAELCRATMIYSDNPAANLLFPLVGDPQGLTAFLRGIGDTQTRSDRHEP 177
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T A L + D Q Q+ I + A
Sbjct: 178 EMNQFAAGDPRDTTTPAAMALTLRTLLLGDALQPASRKQLSDWMIDNRTGDTCLRAGLPR 237
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQS---LIAVILGALDRNTRNKVSA 257
G KTG N +A L+ L ++ + +A
Sbjct: 238 SWKIGDKTGSNGIDTRNDIAILWPPKGRAPLLLTTYLNGASVDSDARDAA 287
>gi|146260117|gb|ABQ14400.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEMHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|259014674|gb|ACV88637.1| beta-lactamase TEM-1 [Escherichia coli]
Length = 256
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/252 (15%), Positives = 71/252 (28%), Gaps = 14/252 (5%)
Query: 6 VIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPA 54
V + + P + ET Y LD N+G ++ P+ +
Sbjct: 2 VALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMM 61
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S K++ V S + + L I S+N + MT+ I
Sbjct: 62 STFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITM 121
Query: 115 SANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
S N A + ++ ++ F+ +M + L A + A
Sbjct: 122 SDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATT 181
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
L + + Q+ K + K+G I+A+
Sbjct: 182 LRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAAL 241
Query: 233 IQGDQS-LIAVI 243
+ I VI
Sbjct: 242 GPDGKPSRIVVI 253
>gi|259014672|gb|ACV88636.1| beta-lactamase TEM-1 [Escherichia coli]
Length = 261
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/252 (15%), Positives = 71/252 (28%), Gaps = 14/252 (5%)
Query: 6 VIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPA 54
V + + P + ET Y LD N+G ++ P+ +
Sbjct: 2 VALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMM 61
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S K++ V S + + L I S+N + MT+ I
Sbjct: 62 STFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITM 121
Query: 115 SANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
S N A + ++ ++ F+ +M + L A + A
Sbjct: 122 SDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATT 181
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
L + + Q+ K + K+G I+A+
Sbjct: 182 LRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAAL 241
Query: 233 IQGDQS-LIAVI 243
+ I VI
Sbjct: 242 GPDGKPSRIVVI 253
>gi|241889185|ref|ZP_04776488.1| hypothetical protein GEMHA0001_1037 [Gemella haemolysans ATCC
10379]
gi|241864022|gb|EER68401.1| hypothetical protein GEMHA0001_1037 [Gemella haemolysans ATCC
10379]
Length = 399
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 14/247 (5%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ + NTG +I++ + + L + Y++ LK KK L I I + +
Sbjct: 44 VVSELNTGKIISKRGENEKVSVGKLPNYLALYLLTDNLKNKKITLDEKINI-ASGDDILS 102
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ L+ S N K+ + M+ L
Sbjct: 103 KYKIESSITVKDAIFLLENENSNSLNQAVFTHFNVTLDKAKETLAAMSLHDTKLESLD-- 160
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ +TA++++ L+ I ++P+ + + ++ N +
Sbjct: 161 -------NNGNNTSTAKNISYLTSLILKNYPEITEITKNPEHTLVSREKINNSVEFKESD 213
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG-ALDRNTRNKVSASLLSMGFYNKTDR 270
+ S N V A G+ LI +L + D+ T F N +
Sbjct: 214 ---KFRVLGLDYSDKNSVTYAYSGNTKLIITVLNQSDDKATYFDKLQKTYDYLFSNYNYK 270
Query: 271 KKINYII 277
+
Sbjct: 271 LALKAGT 277
>gi|52078046|gb|AAU25807.1| beta-lactamase LEN-5 [Klebsiella pneumoniae]
Length = 286
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 65/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYIRLCVISLLATLPLAVYAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLTDGMTIGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPDGKPER 253
>gi|315940017|gb|ADU56219.1| TEM-2 extended-spectrum beta-lactamase [Escherichia coli]
gi|315940021|gb|ADU56221.1| TEM-2 extended-spectrum beta-lactamase [Escherichia coli]
Length = 219
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MISTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPA 182
>gi|258551275|gb|ACV74420.1| beta-lactamase [Expression shuttle vector pGAPDH.Rep68]
gi|258551278|gb|ACV74422.1| beta-lactamase [Expression shuttle vector pGAPDH.Rep68(Y156F)]
Length = 286
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGARERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|146260017|gb|ABQ14371.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/259 (14%), Positives = 70/259 (27%), Gaps = 21/259 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWNPASL 56
+ A L ++ + N Y LD N+G ++ P+ + S
Sbjct: 2 LIPFFAAFCLPVFAHPETLVKANDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMST 61
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V S + + L I S+N + MT+ I S
Sbjct: 62 FKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSD 121
Query: 117 NDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + ++ ++ F+ +M + L A + L
Sbjct: 122 NTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLR 181
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ K + K+G A +
Sbjct: 182 KLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSG------------AGE 229
Query: 235 GDQSLIAVILGALDRNTRN 253
I LG + +R
Sbjct: 230 RGSRGIIAALGPDGKPSRF 248
>gi|146259995|gb|ABQ14361.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 40/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
I + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 AIIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|57236771|gb|AAW48997.1| TEM beta-lactamase [Vibrio cholerae]
gi|197725587|gb|ACH73002.1| TEM beta-lactamase [Acinetobacter baumannii]
Length = 286
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGGILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+++M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLRNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|10641070|dbj|BAB16308.1| TEM-derived extended-spectrum beta-lactamase [Escherichia coli]
Length = 286
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDCWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|146260162|gb|ABQ14413.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 69/258 (26%), Gaps = 13/258 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQSLIAVILGALDRNT 251
+ V++
Sbjct: 241 PDGKPSHIVVIYTTGSQA 258
>gi|237640325|ref|YP_002891180.1| AmpR [Escherichia coli]
gi|229561544|gb|ACQ77747.1| AmpR [Escherichia coli]
Length = 278
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/267 (14%), Positives = 77/267 (28%), Gaps = 9/267 (3%)
Query: 6 VIIAMAMLSNIFPFLS-----IAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ A + P + Y LD N+G ++ P+ + S K+
Sbjct: 5 LFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 64
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 65 LLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 124
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + A L +
Sbjct: 125 ANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLL 184
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 185 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 244
Query: 238 S-LIAVILGALDRNTRNKVSASLLSMG 263
I VI + T ++ + + +G
Sbjct: 245 PSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|10443724|gb|AAG17550.1| beta-lactamase SHV-14 [Klebsiella pneumoniae]
Length = 286
Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----------LPYYTLLDTNTGHVIAENYPDH 49
MR F + I + + + + + +D +G + D
Sbjct: 1 MRYFRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGSVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|4732037|gb|AAD28563.1|AF118920_1 beta-lactamase [Cloning vector pSPZ1(+)]
gi|22000816|gb|AAM88286.1|AF525778_1 beta lactamase [Expression vector pCMH285]
gi|452349|emb|CAA82706.1| unnamed protein product [synthetic construct]
gi|4322593|gb|AAD16103.1| beta-lactamase [Cloning vector pCPT8]
gi|4322640|gb|AAD16105.1| beta-lactamase [Cloning vector pCPT9]
gi|13094135|dbj|BAB32736.1| beta-lactamase [Cloning vector pPV2]
gi|13094138|dbj|BAB32738.1| beta-lactamase [Cloning vector pPVLUC441]
gi|22001013|gb|AAM82245.1| beta lactamase [Expression vector pCMH411]
gi|222093508|gb|ACM43516.1| beta-lactamase [Transformation vector pOKE104]
Length = 286
Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 39/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ + + S + + L S+N + MT+ I
Sbjct: 66 MMSTFKVLLCHTLLSRIDAGQEQLGRRARYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMP 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|29831205|ref|NP_825839.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces avermitilis
MA-4680]
gi|29608319|dbj|BAC72374.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
avermitilis MA-4680]
Length = 461
Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 22/58 (37%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+ + P L ++D TG + D PAS TK+ TA V S
Sbjct: 73 ALAGVLDPLLKDGSLGTRRSAAVVDVATGRRLYGKGVDEALTPASTTKIATAVAVLSA 130
>gi|84380855|gb|ABC58727.1| extended-spectrum beta-lactamase SHV-86 [Klebsiella pneumoniae]
Length = 286
Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRFIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASRRGARGIVALLGPNNKAER 253
>gi|21388250|emb|CAC85660.1| TEM-93 ES-beta-lactamase [Escherichia coli]
Length = 286
Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|3282024|emb|CAA76793.1| beta-lactamase class A [Klebsiella pneumoniae]
gi|170652709|gb|ACB22021.1| extended spectrum beta-lactamase blaTEM-20 [Escherichia coli]
Length = 286
Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|329118533|ref|ZP_08247237.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria bacilliformis
ATCC BAA-1200]
gi|327465268|gb|EGF11549.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria bacilliformis
ATCC BAA-1200]
Length = 469
Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + D +G V+AE+ D P NPAS KL+TAY
Sbjct: 31 AFFVQDLRSGKVLAEHRADVPLNPASTMKLVTAYAALRA 69
>gi|325533970|pdb|3P98|A Chain A, The Crystal Structure Of The Extended Spectrum
Beta-Lactamase Tem-72 Reveals Inhibition By Citrate
gi|325533971|pdb|3P98|B Chain B, The Crystal Structure Of The Extended Spectrum
Beta-Lactamase Tem-72 Reveals Inhibition By Citrate
gi|6606272|gb|AAF19150.1|AF157413_1 beta-lactamase TEM-72 [Proteus mirabilis]
gi|6606274|gb|AAF19151.1|AF157553_1 beta-lactamase TEM-72 [Morganella morganii]
Length = 286
Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASKRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|215261172|pdb|3CMZ|A Chain A, Tem-1 Class-A Beta-Lactamase L201p Mutant Apo Structure
Length = 263
Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTPASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|257068455|ref|YP_003154710.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Brachybacterium faecium DSM 4810]
gi|256559273|gb|ACU85120.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Brachybacterium faecium DSM 4810]
Length = 469
Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
++D TG ++A PD PAS KL+TA V
Sbjct: 104 VVDAGTGQILASRDPDTALVPASTLKLLTAAAVLREY 140
>gi|6466826|gb|AAF13045.1|AF157641_1 Hrd6-1 [Desulfitobacterium dehalogenans]
Length = 251
Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/150 (14%), Positives = 38/150 (25%), Gaps = 4/150 (2%)
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGT-FLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ K + N G GMK SA + +I
Sbjct: 19 FREYIKPIPCIPREKKCTHRMINEISSFADDGITGMKR-DIPLLPKLFSRSASRDGLDVI 77
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEE-VCTT 299
VIL + R +LL GF + + ++ ++++ + T
Sbjct: 78 GVILKSPGREI-YTDMQALLDYGFEQFENTLYKGIGDSLGQIEIQGQQINLLTDQALWIT 136
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKITLL 329
QK D +L
Sbjct: 137 QKRDKALAQPRINVLPIRGELTDVAAGQVL 166
>gi|17987197|ref|NP_539831.1| penicillin-binding protein 6 (D-alanyl-D-alanine carboxypeptidase
fraction C) [Brucella melitensis bv. 1 str. 16M]
gi|17982867|gb|AAL52095.1| penicillin-binding protein 6 (d-alanyl-d-alanine carboxypeptidase
fraction c) [Brucella melitensis bv. 1 str. 16M]
Length = 182
Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKK 272
DG+KTG+T SG+N+V+SA ++ L+ V+LGA R+ A LL+ F + K
Sbjct: 1 MDGIKTGYTNVSGYNLVSSAYINNRHLVGVVLGAGSAGQRDGQMAKLLTR-FGGVDNGKA 59
Query: 273 INYIIKDFYQQNLSNEVPNISEEVC 297
+ Q + P++ ++
Sbjct: 60 APLVAMAKPQAVTAKLKPDVVADLI 84
>gi|295395567|ref|ZP_06805761.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Brevibacterium mcbrellneri ATCC 49030]
gi|294971586|gb|EFG47467.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Brevibacterium mcbrellneri ATCC 49030]
Length = 521
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
P A+ + D TG + + + PAS+TK++TA
Sbjct: 135 PIFDSAKDPSAFSAEVRDAKTGDTLYDKDANRARTPASVTKVLTATAALDA 185
>gi|75907630|ref|YP_321926.1| penicillin-binding protein, transpeptidase [Anabaena variabilis
ATCC 29413]
gi|75701355|gb|ABA21031.1| Penicillin-binding protein, transpeptidase [Anabaena variabilis
ATCC 29413]
Length = 504
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/233 (14%), Positives = 65/233 (27%), Gaps = 7/233 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L N+ L+ A N P L+D +TG + + AS K+ F +
Sbjct: 194 LKNVVQQLATANPNLSPGVFLVDLDTGG-YVDINAANALPAASTIKIPILVAFFQDVDAG 252
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
K L +T+ + N +K T + ++ +++ A + + +
Sbjct: 253 KIRLDEVLTMQQEMVAGGSGNFQYKPAGTQYPALEVATKMITVSDNTATNMLIARLGGIE 312
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+ + + + G M ++S I
Sbjct: 313 ALNERFRSWGLTTTVIRNILPDLPGTNTTSPKELGNIMTMVSQGNLVSMRSRDQILDIMR 372
Query: 193 LEIKGKKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ P G GA KTG + + I ++
Sbjct: 373 QTERDNLLP-----SGLGAGARVYHKTGDIGTMLADAGLIDTPTGKRYIVAVM 420
>gi|146260160|gb|ABQ14412.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 78/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFLAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|13492214|gb|AAK28131.1|AF335419_1 beta-lactamase [Cloning vector pPGKneo-I]
gi|13492219|gb|AAK28135.1|AF335420_2 beta-lactamase [Cloning vector pPGKneo-II]
gi|228484711|gb|ACQ43938.1| beta-lactamase [cloning vector pHC02]
gi|228484715|gb|ACQ43941.1| beta-lactamase [cloning vector pHC03]
gi|228484719|gb|ACQ43944.1| beta-lactamase [cloning vector pHC04]
Length = 286
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ + + S + + L S+N + MT+ I
Sbjct: 66 MMSTFKVLLCHTLLSRIDAGQEQLGRRARYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDESDTTMPVAMP 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|146260070|gb|ABQ14389.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYAPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|56123232|gb|AAV74524.1| beta-lactamase TEM1E [Escherichia coli]
Length = 269
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 42/269 (15%), Positives = 78/269 (28%), Gaps = 17/269 (6%)
Query: 8 IAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPASL 56
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 LIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 FKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSD 120
Query: 117 NDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + ++ ++ F+ +M + L A + A L
Sbjct: 121 NTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLR 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ K + K+G I+A+
Sbjct: 181 KLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGP 240
Query: 235 GDQS-LIAVI--LGAL-DRNTRNKVSASL 259
+ I VI G+ + RN+ A +
Sbjct: 241 DGKPSRIVVIYTTGSQATMDERNRQIAEI 269
>gi|13236848|gb|AAK14792.1| extended-spectrum beta-lactamase TEM-88 [Klebsiella pneumoniae]
Length = 286
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTDELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|312141822|ref|YP_004009158.1| d-alanyl-d-alanine carboxypeptidase [Rhodococcus equi 103S]
gi|311891161|emb|CBH50480.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus equi
103S]
Length = 302
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/223 (17%), Positives = 82/223 (36%), Gaps = 11/223 (4%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-------KNASEYPPSNSTFKKGST 101
P AS K++TA V +T++ ++ ++ S G
Sbjct: 71 RPRPTASTAKVITALAVLERKPLAPGEDGPTLTMTEADADLYRDYADRGGSAVAVGAGQQ 130
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
++ L +++ SAN++A +A + ++ ++LG+++T
Sbjct: 131 LSEYEMLVGMLLPSANNLADTLAVWAFGSLAEYRTAATQLVRSLGMTSTTVGTDASGFSS 190
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+T +D+ +L+ + + NTN +G G G+KTG T
Sbjct: 191 STTSTVQDLTLLAAAAVRNPVIAEIVARDHATLSGVGVVFNTNSLLGR-PGVVGLKTGTT 249
Query: 222 CASGFNIVASAIQG--DQSLIAVILG-ALDRNTRNKVSASLLS 261
+G + +A G + ++ + G + ++ LL
Sbjct: 250 DEAGGVFLFAARVGAAGRLVVGAVQGEGRSAHDAVTRASRLLD 292
>gi|24158844|pdb|1LI9|A Chain A, Crystal Structure Of Tem-34 Beta-Lactamase At 1.5 Angstrom
Length = 263
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMVSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|304359286|gb|ADM25824.1| extended spectrum beta-lactamase SHV-134 [Klebsiella pneumoniae]
Length = 286
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLREIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|146260043|gb|ABQ14381.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/267 (13%), Positives = 77/267 (28%), Gaps = 7/267 (2%)
Query: 4 FLVIIAMAMLS---NIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
F + + + + + Y LD N+G ++ P+ + S K+
Sbjct: 5 FFAAFCLPVFAHPETLVKVKGAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 64
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 65 LLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 124
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + L +
Sbjct: 125 ANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLL 184
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 185 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 244
Query: 238 S-LIAVILGALDRNTRNKVSASLLSMG 263
I VI + T ++ + + +G
Sbjct: 245 PSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|227501199|ref|ZP_03931248.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus tetradius ATCC
35098]
gi|227216600|gb|EEI82004.1| D-alanyl-D-alanine carboxypeptidase [Anaerococcus tetradius ATCC
35098]
Length = 313
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 43/255 (16%), Positives = 84/255 (32%), Gaps = 26/255 (10%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN- 85
+++ D N G + + ASL+KL + K L + IS
Sbjct: 59 DALAFSVYDLNEGKYLFYEGGKQLPSVASLSKLF----AIDYA-MTKVKLDDKVEISDEL 113
Query: 86 -ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES-----------LCKTEKK 133
+ S+ + T ++ ++V S ND A A+A + + +
Sbjct: 114 LSLVPEGSSLANLRSGEYTAKQIIQAMLVPSGNDAAYALAYNIGKKELGDGYSTKEYVEY 173
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM--HYFQIK 191
FV+ + + K G + T + G + + + DF +
Sbjct: 174 FVKKLEDYLKKEGYTNTDLFDPSGFSTQAYTDLDDINRVALKLLDYDFVRECVGESSFTI 233
Query: 192 GLEIKGKKYPNTNWA-----VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ NTN + G+KTG T A +N++A + + + L A
Sbjct: 234 HTNQGDFTWKNTNEFLDKGSLYYNKYIKGLKTG-TMAESYNLLALYEKDGKGYLITCLAA 292
Query: 247 LDRNTRNKVSASLLS 261
R + + ++
Sbjct: 293 KSDKDRYQAVQAAIN 307
>gi|146260002|gb|ABQ14364.1| beta-lactamase [uncultured soil bacterium]
gi|146260004|gb|ABQ14365.1| beta-lactamase [uncultured soil bacterium]
gi|146260011|gb|ABQ14368.1| beta-lactamase [uncultured soil bacterium]
gi|146260013|gb|ABQ14369.1| beta-lactamase [uncultured soil bacterium]
gi|146260015|gb|ABQ14370.1| beta-lactamase [uncultured soil bacterium]
gi|146260019|gb|ABQ14372.1| beta-lactamase [uncultured soil bacterium]
gi|146260024|gb|ABQ14374.1| beta-lactamase [uncultured soil bacterium]
gi|146260026|gb|ABQ14375.1| beta-lactamase [uncultured soil bacterium]
gi|146260035|gb|ABQ14378.1| beta-lactamase [uncultured soil bacterium]
gi|146260037|gb|ABQ14379.1| beta-lactamase [uncultured soil bacterium]
gi|146260039|gb|ABQ14380.1| beta-lactamase [uncultured soil bacterium]
gi|146260049|gb|ABQ14383.1| beta-lactamase [uncultured soil bacterium]
gi|146260063|gb|ABQ14387.1| beta-lactamase [uncultured soil bacterium]
gi|146260097|gb|ABQ14395.1| beta-lactamase [uncultured soil bacterium]
gi|146260114|gb|ABQ14399.1| beta-lactamase [uncultured soil bacterium]
gi|146260136|gb|ABQ14406.1| beta-lactamase [uncultured soil bacterium]
gi|146260155|gb|ABQ14410.1| beta-lactamase [uncultured soil bacterium]
gi|146260166|gb|ABQ14414.1| beta-lactamase [uncultured soil bacterium]
gi|146260178|gb|ABQ14419.1| beta-lactamase [uncultured soil bacterium]
gi|146260188|gb|ABQ14424.1| beta-lactamase [uncultured soil bacterium]
gi|146260214|gb|ABQ14434.1| beta-lactamase [uncultured soil bacterium]
gi|146260218|gb|ABQ14435.1| beta-lactamase [uncultured soil bacterium]
gi|146260223|gb|ABQ14437.1| beta-lactamase [uncultured soil bacterium]
gi|146260225|gb|ABQ14438.1| beta-lactamase [uncultured soil bacterium]
gi|146260235|gb|ABQ14442.1| beta-lactamase [uncultured soil bacterium]
gi|146260242|gb|ABQ14445.1| beta-lactamase [uncultured soil bacterium]
gi|146260250|gb|ABQ14447.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|146260157|gb|ABQ14411.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|121485911|gb|ABM54869.1| beta-lactamase TEM-159 [Proteus mirabilis]
Length = 286
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 44/274 (16%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MISTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|112785120|gb|ABI20750.1| TEM extended-spectrum beta-lactamase [Enterococcus gallinarum]
Length = 286
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAKPNDERDTTMPV 182
>gi|28192514|gb|AAN05026.1| TEM-117 beta-lactamase [Escherichia coli]
Length = 255
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/247 (15%), Positives = 70/247 (28%), Gaps = 14/247 (5%)
Query: 11 AMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ FP + ET Y LD N+G ++ P+ + S K+
Sbjct: 1 FFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 61 LLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 120
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + A L +
Sbjct: 121 ANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLL 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 181 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 240
Query: 238 S-LIAVI 243
I VI
Sbjct: 241 PSRIVVI 247
>gi|21465759|pdb|1JWV|A Chain A, Crystal Structure Of G238a Mutant Of Tem-1 Beta-Lactamase
In Complex With A Boronic Acid Inhibitor (Sefb4)
Length = 263
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAAERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|76799932|ref|ZP_00781933.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21]
gi|76584716|gb|EAO61473.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21]
Length = 96
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 19/97 (19%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------------------NKLPYYTLLDTNTGHVI 42
M + +V +LS AE NK ++D N GH++
Sbjct: 1 MPKLIVSFLCILLSLTCVNSVQAEEHKDIMQITREAGYDVKDINKPKASIVID-NKGHIL 59
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
E+ D +PAS++K+ T Y++F L + K T
Sbjct: 60 WEDNADLERDPASMSKMXTLYLLFEDLXKGKTSPHTT 96
>gi|223006551|emb|CAQ00120.1| beta-lactamase [Proteus mirabilis]
Length = 286
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 80/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ ++ + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNIGDHVTRLDRWEPELNEAIPNDERDTTMPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|27228440|ref|NP_758767.1| beta lactamase [Erwinia amylovora]
gi|26245317|gb|AAM94881.1| beta lactamase [Erwinia amylovora ATCC BAA-2158]
Length = 283
Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/273 (15%), Positives = 78/273 (28%), Gaps = 17/273 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGXKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTXMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQSLIAVI---LGAL-DRNTRNKVSASL 259
+ + V+ G+ + RN+ A +
Sbjct: 246 ALGPDGKPSRIVVXYPTGSQATMDERNRQIAEI 278
>gi|323186289|gb|EFZ71640.1| beta-lactamase family protein [Escherichia coli 1357]
Length = 212
Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPV 182
>gi|256862202|gb|ACV32636.1| beta-lactamase Shv126 [Escherichia coli]
Length = 271
Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/266 (13%), Positives = 67/266 (25%), Gaps = 25/266 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTRN 253
A + I +LG ++ R
Sbjct: 233 ----AGKRGARGIVALLGPNNKAERT 254
>gi|73535720|pdb|1YT4|A Chain A, Crystal Structure Of Tem-76 Beta-Lactamase At 1.4 Angstrom
Resolution
Length = 263
Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMGDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|37778094|gb|AAR02606.1| beta lactamase [Expression vector pYES260]
gi|37778096|gb|AAR02607.1| beta lactamase [Expression vector pYES263]
Length = 207
Score = 53.1 bits (125), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ + S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCDTLLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDESDTTMPV 182
>gi|65319856|ref|ZP_00392815.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A2012]
Length = 120
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
G DG++T F+ S ++ V++A +GD LI+VIL A + N+ + LL GF
Sbjct: 12 QGVDGLQTSFSTNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFD 66
>gi|146260054|gb|ABQ14384.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 76/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHSMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|83596180|gb|ABC25482.1| beta-lactamase SHV-71 [Acinetobacter baumannii]
Length = 286
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPDNKAER 253
>gi|146260119|gb|ABQ14401.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLATIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|146260172|gb|ABQ14416.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATAL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|546975|gb|AAB30893.1| TEM-2 beta-lactamase {Val-237 for Ala substitution} [Escherichia
coli, K12, carbenicillin resistance mutant 554, plasmid
R554, Peptide Plasmid Insertion Mutant, 263 aa]
Length = 263
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGVGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|255098962|gb|ACU00830.1| TEM-1 beta-lactamase [Escherichia coli]
Length = 242
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 3 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 62
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 63 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 122
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 123 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 182
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 183 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 239
>gi|163311071|pdb|3BFD|A Chain A, Crystal Structure Of The Class A Beta-Lactamase Sed-G238c
Mutant From Citrobacter Sedlakii
gi|163311072|pdb|3BFD|B Chain B, Crystal Structure Of The Class A Beta-Lactamase Sed-G238c
Mutant From Citrobacter Sedlakii
gi|163311073|pdb|3BFD|C Chain C, Crystal Structure Of The Class A Beta-Lactamase Sed-G238c
Mutant From Citrobacter Sedlakii
gi|163311074|pdb|3BFD|D Chain D, Crystal Structure Of The Class A Beta-Lactamase Sed-G238c
Mutant From Citrobacter Sedlakii
Length = 263
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 67/237 (28%), Gaps = 11/237 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ V+ D + S +K+MTA V + +L +TI K +
Sbjct: 28 ADNSQVLY--RADERFAMCSTSKVMTAAAVLKQSETHDGILQQKMTIKKADLTNWNPVTE 85
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNLGLSATHFM 153
G+TMTL + S N + F + + +T+ L
Sbjct: 86 KYVGNTMTLAELSAATLQYSDNTAMNKLLAHLGGPGNVTAFARSIGDTTFRLDRKEPELN 145
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + + L D Q+ + A
Sbjct: 146 TAIPGDERDTTSPLAMAKSLRKLTLGDALAGPQRAQLVDWLKGNTTGGQSIRAGLPAHWV 205
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMG 263
G KTG N +A D+ L+ V A R +A +++ G
Sbjct: 206 VGDKTGACDYGTTNDIAVIWPEDRAPLVLVTYFTQPQQDAKWRKDVLAAAAKIVTEG 262
>gi|37575400|gb|AAQ93652.1| RDfusion [Ribosome display vector pRDV]
Length = 581
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 32 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 91
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 92 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 151
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 152 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 211
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 212 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 268
>gi|8569630|pdb|1ERO|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta Lactamase In Complex
With A Designed Boronic Acid Inhibitor (1r)-2-
Phenylacetamido-2-(3-Carboxyphenyl)ethyl Boronic Acid
gi|8569631|pdb|1ERQ|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta Lactamase In Complex
With A Designed Boronic Acid Inhibitor
(1r)-1-Acetamido-2- (3-Carboxy-2-Hydroxyphenyl)ethyl
Boronic Acid
gi|46015634|pdb|1S0W|A Chain A, 1b Lactamse B LACTAMASE INHIBITOR
gi|46015636|pdb|1S0W|B Chain B, 1b Lactamse B LACTAMASE INHIBITOR
gi|157834258|pdb|1XPB|A Chain A, Structure Of Beta-Lactamase Tem1
Length = 263
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|302553167|ref|ZP_07305509.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces viridochromogenes DSM 40736]
gi|302470785|gb|EFL33878.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces viridochromogenes DSM 40736]
Length = 458
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 24/59 (40%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
A+ + P L P +++D TG + D PAS TK+ TA S +
Sbjct: 75 ALAQALTPLLKDPALGTRPAASVVDVTTGRSLYGTDQDAALTPASTTKIATAVAALSAM 133
>gi|268318352|ref|YP_003292070.1| beta-lactamase [Rhodothermus marinus DSM 4252]
gi|262335886|gb|ACY49682.1| beta-lactamase [Rhodothermus marinus DSM 4252]
Length = 296
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 8/173 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLL------DTNTGHVIAENYPDHPWNPA 54
MR +++A +L F + Y L + TG + D + A
Sbjct: 1 MRWLFLVLATGLLPWALAFQTEPFGRIEHRYELTLGVAAHNLTTGASVFYR-ADTLFPTA 59
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIV 113
S+ KL ++ ++ + ++ ++L +A L+I+
Sbjct: 60 SVIKLAVLVELYRQYEQGYLSPQDTVVLTAGRIYPGSGVLQHLSVPRVLSLQDAAVLMII 119
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
S N + + L + +N T ++LGL T +N T
Sbjct: 120 LSDNTATNLVFDRLGPHHDARLDSVNATLRSLGLQRTRMLNKPFGFSTRKNTP 172
>gi|163311067|pdb|3BFC|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
gi|163311068|pdb|3BFC|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
gi|163311069|pdb|3BFC|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
gi|163311070|pdb|3BFC|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Imipenem
gi|163311079|pdb|3BFF|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
gi|163311080|pdb|3BFF|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
gi|163311081|pdb|3BFF|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
gi|163311082|pdb|3BFF|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Faropenem
gi|163311083|pdb|3BFG|A Chain A, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
gi|163311084|pdb|3BFG|B Chain B, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
gi|163311085|pdb|3BFG|C Chain C, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
gi|163311086|pdb|3BFG|D Chain D, Class A Beta-Lactamase Sed-G238c Complexed With Meropenem
Length = 262
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 67/237 (28%), Gaps = 11/237 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ V+ D + S +K+MTA V + +L +TI K +
Sbjct: 27 ADNSQVLY--RADERFAMCSTSKVMTAAAVLKQSETHDGILQQKMTIKKADLTNWNPVTE 84
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNLGLSATHFM 153
G+TMTL + S N + F + + +T+ L
Sbjct: 85 KYVGNTMTLAELSAATLQYSDNTAMNKLLAHLGGPGNVTAFARSIGDTTFRLDRKEPELN 144
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + + L D Q+ + A
Sbjct: 145 TAIPGDERDTTSPLAMAKSLRKLTLGDALAGPQRAQLVDWLKGNTTGGQSIRAGLPAHWV 204
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMG 263
G KTG N +A D+ L+ V A R +A +++ G
Sbjct: 205 VGDKTGACDYGTTNDIAVIWPEDRAPLVLVTYFTQPQQDAKWRKDVLAAAAKIVTEG 261
>gi|38098485|gb|AAR10958.1| extended-spectrum beta-lactamase TEM-131 [Salmonella enterica
subsp. enterica serovar Typhimurium]
Length = 286
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 44/274 (16%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGTGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|23664426|gb|AAN39364.1| SHV beta lactamase [Klebsiella pneumoniae]
Length = 286
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ +++ L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIDDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|5733490|gb|AAD49603.1|AF147463_1 beta-lactamase [Expression vector pNam]
gi|2623824|gb|AAB86560.1| RTEM-1 beta-lactamase [Shuttle vector pMAL-pIII]
gi|2654023|gb|AAB87677.1| beta-lactamase [Expression vector pMal-X]
gi|3983123|gb|AAC83814.1| beta-lactamase [Expression vector pMBP-parallel1]
gi|15216976|gb|AAK92456.1| beta-lactamase [Retrofitting vector pRetroES]
gi|129278849|gb|ABO28853.1| beta-lactamase [Cloning vector pD-MAL1]
gi|259490924|gb|ACW82459.1| beta-lactamase [Cloning vector pLitmus 28C1]
gi|259490927|gb|ACW82461.1| beta-lactamase [Cloning vector pLitSB3Aek]
Length = 286
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 78/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERSP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|8569629|pdb|1ERM|A Chain A, X-Ray Crystal Structure Of Tem-1 Beta Lactamase In Complex
With A Designed Boronic Acid Inhibitor
(1r)-1-Acetamido-2- (3-Carboxyphenyl)ethane Boronic Acid
Length = 263
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEAXKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|2467190|emb|CAA73933.1| extended-spectrum TEM-type beta-lactamase variant, TEM-52
[Klebsiella pneumoniae]
gi|2612978|gb|AAB84239.1| extended spectrum beta-lactamase [Klebsiella pneumoniae]
gi|58615622|gb|AAW80310.1| extended-spectrum beta-lactamase TEM-52 [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|119632825|gb|ABL84416.1| TEM-52 [Salmonella enterica subsp. enterica serovar Typhimurium]
Length = 286
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|17232314|ref|NP_488862.1| hypothetical protein all4822 [Nostoc sp. PCC 7120]
gi|17133959|dbj|BAB76521.1| all4822 [Nostoc sp. PCC 7120]
Length = 424
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/237 (14%), Positives = 68/237 (28%), Gaps = 13/237 (5%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN-ASEYPPS 92
LD TG + + + + AS K +F + + + + ++ + +
Sbjct: 185 LDMETGEYL-DINGEKTFAAASTIKFPILIALFEEIDAGRINPNETLVMRRDLMTGGSGT 243
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
K GS L +++ S N I + L +N + GL T
Sbjct: 244 MQYRKAGSRFKLMETASKMMIISDNTATNMIIDRL-----GGKNRLNQKFRTWGLQNTVI 298
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
N G + + T+ +D+ L+ I + + K +
Sbjct: 299 RNLLGDFKGTNKTSPKDLVRLAALISNNKLLSATSNSRVMDIMSRCKNRSLLPVGLGKGA 358
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSL---IAVI--LGALDRNTRNKVSASLLSMGF 264
KTG + + I V G + L+ G+
Sbjct: 359 VIAHKTGTLGRVLGDAGIIQTPSGKRYLAGIIVARPFGDARARAFINQVSRLV-YGY 414
>gi|46370395|gb|AAS89983.1| beta-lactamase [Proteus mirabilis]
Length = 286
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|4559300|gb|AAD22974.1| extended-spectrum beta-lactamase variant [Salmonella enterica
subsp. enterica serovar Saintpaul]
Length = 279
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|146260195|gb|ABQ14427.1| beta-lactamase [uncultured soil bacterium]
gi|146260205|gb|ABQ14430.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFYLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|23505686|gb|AAN05028.1| TEM-75 beta-lactamase [Klebsiella pneumoniae]
Length = 261
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/249 (14%), Positives = 71/249 (28%), Gaps = 15/249 (6%)
Query: 11 AMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ FP + ET Y LD N+G ++ P+ + S K+
Sbjct: 1 FFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 61 LLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 120
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + A L +
Sbjct: 121 ANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMATTLRKLL 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 181 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 240
Query: 238 --SLIAVIL 244
++ + +
Sbjct: 241 PSRIVVIYM 249
>gi|146260220|gb|ABQ14436.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/270 (14%), Positives = 75/270 (27%), Gaps = 14/270 (5%)
Query: 8 IAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPASL 56
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 2 LIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMST 61
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I S+N + MT+ I S
Sbjct: 62 FKVLLCGAVLFRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSD 121
Query: 117 NDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + ++ ++ F+ +M + L A L
Sbjct: 122 NTAANLLLTAIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDGRDTTMPVAMATTLR 181
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ K + K+G I+A+
Sbjct: 182 KLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGP 241
Query: 235 GDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 242 DGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|99031866|pdb|2B5R|A Chain A, 1b Lactamase B LACTAMASE INHIBITOR
gi|99031868|pdb|2B5R|B Chain B, 1b Lactamase B LACTAMASE INHIBITOR
Length = 263
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N Y
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVY 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 NSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|224979335|gb|ACN72587.1| beta-lactamase SHV-12-like protein [Salmonella enterica subsp.
enterica serovar Typhimurium]
Length = 286
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLEREIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|146260086|gb|ABQ14391.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.1 bits (125), Expect = 6e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIYYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|256862198|gb|ACV32634.1| beta-lactamase Shv124 [Klebsiella pneumoniae]
Length = 271
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLDQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|75445751|sp|Q848S4|BLA46_KLEOX RecName: Full=Beta-lactamase SHV-46; Flags: Precursor
gi|28912445|gb|AAO53445.1| class A beta-lactamase SHV-46 [Klebsiella oxytoca]
Length = 286
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLNSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|86605517|ref|YP_474280.1| carboxylesterase [Synechococcus sp. JA-3-3Ab]
gi|86554059|gb|ABC99017.1| carboxylesterase, beta-lactamase family [Synechococcus sp.
JA-3-3Ab]
Length = 386
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 71/231 (30%), Gaps = 14/231 (6%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
L+ + +G A PD + AS+ K+ ++ + L
Sbjct: 124 LAALADQPGLTA-GALFWEVESGAF-AGVRPDQVFPAASVIKIPILLAFLQAVETGQVRL 181
Query: 77 TTPITISKNASEYPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
+T+ ++ + GS ++ A L+ S N A I + L
Sbjct: 182 DERLTLREDLRGGGAGVLQTRPLGSRVSALEAATLMSTISDNFAANLIIDRL-----GGR 236
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
+ +N + GL T + + + ++ RDM L + + L
Sbjct: 237 EALNQKFRQWGLQHTQI--SWWLPDLEGTNTSSPRDMVWLLS-QVEQGRMLSRRSRDRFL 293
Query: 194 EIKGKKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVI 243
+I + + + KTG + + + + +A +
Sbjct: 294 DILWRTQRPSYFRPNLGQEVRIAHKTGTLRSVVGDAGILDLPNGRRYVAAV 344
>gi|47168592|pdb|1PZP|A Chain A, Tem-1 Beta-Lactamase In Complex With A Novel, Core-
Disrupting, Allosteric Inhibitor
Length = 263
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQRDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|291501734|gb|ADE08534.1| extended spectrum beta-lactamase SHV-130 [Klebsiella pneumoniae]
Length = 286
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMTATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGKRGARGIVALLGPNNKAER 253
>gi|291501732|gb|ADE08533.1| extended spectrum beta-lactamase SHV-129 [Escherichia coli]
Length = 286
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|90855322|emb|CAI76927.1| beta-lactamase SHV-12 [Escherichia coli]
Length = 279
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|90403947|gb|ABD93867.1| SHV-12 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 282
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|52630976|gb|AAU84950.1| SHV beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|41584434|gb|AAS09882.1| SHV-5 extended spectrum beta-lactamase [Escherichia coli]
Length = 285
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|152973620|ref|YP_001338660.1| putative beta-lactamase SHV-12 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|226807808|ref|YP_002791504.1| BlaSHV-12 [Enterobacter cloacae]
gi|226810122|ref|YP_002791817.1| BlaSHV-12 [Enterobacter cloacae]
gi|297622236|ref|YP_003675789.1| SHV-12 [Klebsiella oxytoca KOX105]
gi|18656794|gb|AAL77982.1|AF462395_1 extended-spectrum beta-lactamase SHV-12 [Enterobacter cloacae]
gi|2113859|emb|CAA66733.1| beta-lactamase SHV-5a [Klebsiella pneumoniae]
gi|11245765|gb|AAG32592.1| beta-lactamase SHV-12 [Klebsiella pneumoniae]
gi|30230493|gb|AAP20889.1| extended-spectrum beta-lactamase SHV-12 [Acinetobacter baumannii]
gi|31096320|gb|AAP43780.1| beta-lactamase SHV-12 [Escherichia coli]
gi|40950644|gb|AAR97950.1| beta-lactamase SHV-5 [Escherichia coli]
gi|41584436|gb|AAS09883.1| SHV-5 extended spectrum beta-lactamase [Escherichia coli]
gi|56181498|gb|AAV83796.1| extended-spectrum beta-lactamase SHV-12 [Klebsiella pneumoniae]
gi|60652542|gb|AAX33294.1| extended-spectrum beta-lactamase SHV-12 [Citrobacter freundii]
gi|81072648|gb|ABB55352.1| SHV-12 [Enterobacter cloacae]
gi|118603541|gb|ABL09147.1| beta-lactamase SHV-12 [Shigella flexneri]
gi|124053901|gb|ABM89157.1| SHV type beta lactamase [Klebsiella pneumoniae]
gi|125743010|gb|ABN54707.1| SHV-12 beta-lactamase [Escherichia coli]
gi|150958402|gb|ABR80430.1| putative beta-lactamase SHV-12 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|160700032|gb|ABX46807.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Braenderup]
gi|160700034|gb|ABX46808.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Livingstone]
gi|160700036|gb|ABX46809.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Livingstone]
gi|160700038|gb|ABX46810.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Livingstone]
gi|160700040|gb|ABX46811.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Livingstone]
gi|160700042|gb|ABX46812.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Livingstone]
gi|160700044|gb|ABX46813.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Livingstone]
gi|160700046|gb|ABX46814.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Enteritidis]
gi|160700048|gb|ABX46815.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Livingstone]
gi|160700050|gb|ABX46816.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Livingstone]
gi|160700052|gb|ABX46817.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Livingstone]
gi|160700054|gb|ABX46818.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Livingstone]
gi|167888211|gb|ACA09609.1| extended spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|167888213|gb|ACA09610.1| extended spectrum beta-lactamase SHV-5 [Escherichia coli]
gi|171466753|gb|ACB46537.1| extended-spectrum beta-lactamase [Enterobacter aerogenes]
gi|215254418|gb|ACJ64201.1| SHV-12 beta lactamase [Klebsiella pneumoniae]
gi|221149264|gb|ACM04456.1| SHV-12 extended spectrum beta-lactamase [Escherichia coli]
gi|225697587|gb|ACO07066.1| beta-lactamase [Klebsiella pneumoniae]
gi|226426035|gb|ACO54128.1| BlaSHV-12 [Enterobacter cloacae]
gi|226426349|gb|ACO54441.1| BlaSHV-12 [Enterobacter cloacae]
gi|238864058|gb|ACR66305.1| beta-lactamase SHV-12 [Raoultella terrigena]
gi|238864060|gb|ACR66306.1| beta-lactamase SHV-12 [Klebsiella pneumoniae]
gi|238864068|gb|ACR66310.1| beta-lactamase SHV-12 [Klebsiella pneumoniae]
gi|238864072|gb|ACR66312.1| beta-lactamase SHV-12 [Raoultella terrigena]
gi|238864076|gb|ACR66314.1| beta-lactamase SHV-12 [Raoultella terrigena]
gi|238864080|gb|ACR66316.1| beta-lactamase SHV-12 [Cronobacter sakazakii]
gi|238864082|gb|ACR66317.1| beta-lactamase SHV-12 [Klebsiella sp. 25]
gi|238864090|gb|ACR66321.1| beta-lactamase SHV-12 [Klebsiella pneumoniae]
gi|238864096|gb|ACR66324.1| beta-lactamase SHV-12 [Klebsiella sp. 49]
gi|238864098|gb|ACR66325.1| beta-lactamase SHV-12 [Klebsiella sp. 52]
gi|238864100|gb|ACR66326.1| beta-lactamase SHV-12 [Klebsiella oxytoca]
gi|256862156|gb|ACV32616.1| beta-lactamase SHV-12 [Klebsiella pneumoniae]
gi|256862172|gb|ACV32624.1| beta-lactamase SHV-12 [Klebsiella pneumoniae]
gi|256862174|gb|ACV32625.1| beta-lactamase SHV-12 [Klebsiella pneumoniae]
gi|257043738|gb|ACV33197.1| beta-lactamase blaSHV-12 [Klebsiella pneumoniae]
gi|257043740|gb|ACV33198.1| beta-lactamase blaSHV-12 [Klebsiella pneumoniae]
gi|257043746|gb|ACV33201.1| beta-lactamase blaSHV-12 [Klebsiella pneumoniae]
gi|257043758|gb|ACV33207.1| beta-lactamase blaSHV-2 [Klebsiella pneumoniae]
gi|257043786|gb|ACV33221.1| beta-lactamase bla-SHV-12 [Klebsiella pneumoniae]
gi|257043788|gb|ACV33222.1| beta-lactamase bla-SHV-12 [Klebsiella pneumoniae]
gi|262477919|gb|ACY68229.1| beta-lactamase blaSHV-12 [Klebsiella pneumoniae]
gi|262477941|gb|ACY68240.1| beta-lactamase blaSHV-12 [Klebsiella pneumoniae]
gi|281335522|gb|ADA62363.1| putative beta-lactamase SHV-12 [Enterobacter cloacae]
gi|283857127|gb|ADB45532.1| extended-spectrum beta-lactamase [Enterobacter cloacae]
gi|284021997|gb|ADB65761.1| beta-lactamase SHV-12 [Enterobacter cloacae]
gi|293652430|gb|ADE60795.1| beta-lactamase SHV-12 [Enterobacter cloacae]
gi|294884917|gb|ADF47454.1| beta-lactamase SHV-12 [Pseudomonas aeruginosa]
gi|295917908|gb|ADG60241.1| BlaSHV-12 [Escherichia coli]
gi|296492055|gb|ADH29557.1| SHV-12 [Klebsiella oxytoca KOX105]
gi|298570505|gb|ADI87566.1| beta-lactamase SHV-12 [Klebsiella pneumoniae]
gi|298570507|gb|ADI87567.1| beta-lactamase SHV-12 [Klebsiella pneumoniae]
gi|298570509|gb|ADI87568.1| beta-lactamase SHV-12 [Klebsiella pneumoniae]
gi|298570513|gb|ADI87570.1| beta-lactamase SHV-12 [Enterobacter cloacae]
gi|298570515|gb|ADI87571.1| beta-lactamase SHV-12 [Enterobacter cloacae]
gi|298570517|gb|ADI87572.1| beta-lactamase SHV-12 [Escherichia coli]
gi|298570519|gb|ADI87573.1| beta-lactamase SHV-12 [Escherichia coli]
gi|300810982|gb|ADK35763.1| extended-spectrum beta-lactamase SHV-12 [Klebsiella pneumoniae]
Length = 286
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|13272528|gb|AAK17194.1|AF332513_1 extended spectrum beta-lactamase TEM-63 [Escherichia coli]
Length = 286
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 44/274 (16%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|146260130|gb|ABQ14404.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 38/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + ++ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQRLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|66576192|gb|AAY51674.1| extended-spectrum beta-lactamase SHV-55 [Klebsiella pneumoniae]
gi|160948447|emb|CAI10727.2| beta-lactamase SHV-55 [Klebsiella pneumoniae]
Length = 286
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRFIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|24158842|pdb|1LHY|A Chain A, Crystal Structure Of Tem-30 Beta-Lactamase At 2.0 Angstrom
Length = 263
Score = 53.1 bits (125), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSSGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|291501736|gb|ADE08535.1| extended spectrum beta-lactamase SHV-131 [Klebsiella pneumoniae]
Length = 286
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|146260174|gb|ABQ14417.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWVEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|146260190|gb|ABQ14425.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 38/271 (14%), Positives = 76/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ + +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTALLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|12744477|gb|AAK06649.1| beta-lactamase SHV-5 [Klebsiella pneumoniae]
Length = 260
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|32470071|ref|NP_863013.1| BlaSHV-5 [Escherichia coli]
gi|61219937|sp|P0A3M1|BLA5_KLEPN RecName: Full=Beta-lactamase SHV-5; Flags: Precursor
gi|61219939|sp|P0A3M2|BLA5_PSEAE RecName: Full=Beta-lactamase SHV-5; Flags: Precursor
gi|18656792|gb|AAL77981.1|AF462394_1 extended-spectrum beta-lactamase SHV-5 [Escherichia coli]
gi|43936|emb|CAA39164.1| beta-lactamase [Klebsiella pneumoniae]
gi|2113857|emb|CAA66731.1| beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|2113861|emb|CAA66732.1| beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|3769675|gb|AAC64608.1| beta-lactamase SHV-5 [Pseudomonas aeruginosa]
gi|28629328|gb|AAO49608.1| BlaSHV-5 [Escherichia coli]
gi|37654372|gb|AAQ96283.1| extended-spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|37654374|gb|AAQ96284.1| extended-spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|37654376|gb|AAQ96285.1| extended-spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|37654378|gb|AAQ96286.1| extended-spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|44443458|gb|AAS47040.1| extended spectrum beta-lactamase [Enterobacter cloacae]
gi|46254790|gb|AAS86327.1| extended-spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|57635343|emb|CAB71033.2| beta-lactamase SHV-5 [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|158518995|gb|ABW70408.1| beta-lactamase SHV-5 [Acinetobacter baumannii]
gi|238864062|gb|ACR66307.1| beta-lactamase SHV-5 [Escherichia coli]
gi|238864078|gb|ACR66315.1| beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|257043796|gb|ACV33226.1| beta-lactamase bla-SHV-5 [Klebsiella pneumoniae]
gi|293652432|gb|ADE60796.1| beta-lactamase SHV-5 [Enterobacter cloacae]
gi|295917906|gb|ADG60240.1| BlaSHV-5 [Escherichia coli]
gi|298570511|gb|ADI87569.1| beta-lactamase SHV-129 [Klebsiella pneumoniae]
gi|298570521|gb|ADI87574.1| beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|298570523|gb|ADI87575.1| beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|298570525|gb|ADI87576.1| beta-lactamase SHV-5 [Klebsiella pneumoniae]
Length = 286
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|315940019|gb|ADU56220.1| TEM-2 extended-spectrum beta-lactamase [Escherichia coli]
Length = 219
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVAVIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MISTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPA 182
>gi|146259999|gb|ABQ14363.1| beta-lactamase [uncultured soil bacterium]
Length = 270
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 38/267 (14%), Positives = 75/267 (28%), Gaps = 9/267 (3%)
Query: 6 VIIAMAMLSNIFPFLS-----IAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
A + P + Y LD N+G ++ P+ + S K+
Sbjct: 3 FFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 62
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 63 LLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 122
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + L +
Sbjct: 123 ANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTLRKLL 182
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 183 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 242
Query: 238 S-LIAVILGALDRNTRNKVSASLLSMG 263
I VI + T ++ + + +G
Sbjct: 243 PSRIVVIYTTGSQATMDERNRQIAEIG 269
>gi|54873596|gb|AAP33454.2| extended spectrum beta-lactamase [Klebsiella pneumoniae]
gi|262477947|gb|ACY68243.1| beta-lactamase blaSHV-31 [Klebsiella pneumoniae]
Length = 286
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGKRGARGIVALLGPNNKAER 253
>gi|46019649|emb|CAG25427.1| beta-lactamase TEM [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|260586480|gb|ACX46122.1| beta-lactamase TEM-135 [Neisseria gonorrhoeae]
gi|284157381|gb|ADB79815.1| ampicillin resistance protein [Escherichia coli]
gi|300116045|dbj|BAJ10643.1| beta-lactamase [Neisseria gonorrhoeae]
Length = 286
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|595783|gb|AAA56743.1| beta-lactamase [unidentified cloning vector]
gi|644776|gb|AAA67273.1| beta-lactamase [Cloning vector pPROEX-1]
gi|145307011|gb|ABP57192.1| beta-lactamase [Expression vector pTRC-LIC]
gi|257359589|gb|ACV53162.1| beta lactamase [Expression vector pETIA]
gi|307557352|gb|ADN52080.1| beta-lactamase [Cloning vector pBEM3]
Length = 286
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPTAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|4884789|gb|AAD31807.1|AF128862_3 beta-lactamase [Cloning vector pHIND2.2]
Length = 286
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRILYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMP 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|7766856|pdb|1ESU|A Chain A, S235a Mutant Of Tem1 Beta-Lactamase
Length = 263
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 71/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKAGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|260656432|pdb|3JYI|A Chain A, Structural And Biochemical Evidence That A Tem-1 {beta}-
Lactamase Asn170gly Active Site Mutant Acts Via
Substrate- Assisted Catalysis
gi|260656433|pdb|3JYI|B Chain B, Structural And Biochemical Evidence That A Tem-1 {beta}-
Lactamase Asn170gly Active Site Mutant Acts Via
Substrate- Assisted Catalysis
gi|260656434|pdb|3JYI|C Chain C, Structural And Biochemical Evidence That A Tem-1 {beta}-
Lactamase Asn170gly Active Site Mutant Acts Via
Substrate- Assisted Catalysis
gi|260656435|pdb|3JYI|D Chain D, Structural And Biochemical Evidence That A Tem-1 {beta}-
Lactamase Asn170gly Active Site Mutant Acts Via
Substrate- Assisted Catalysis
gi|260656436|pdb|3JYI|E Chain E, Structural And Biochemical Evidence That A Tem-1 {beta}-
Lactamase Asn170gly Active Site Mutant Acts Via
Substrate- Assisted Catalysis
gi|260656437|pdb|3JYI|F Chain F, Structural And Biochemical Evidence That A Tem-1 {beta}-
Lactamase Asn170gly Active Site Mutant Acts Via
Substrate- Assisted Catalysis
Length = 263
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELGEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|146260022|gb|ABQ14373.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|163914147|dbj|BAF95849.1| beta-lactamase SHV [Klebsiella pneumoniae]
Length = 286
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALSGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|33943602|gb|AAQ55480.1| beta-lactamase SHV-56 [Acinetobacter baumannii]
Length = 286
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIIYLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|56463107|gb|AAV91695.1| beta-lactamase TEM [Escherichia coli]
Length = 221
Score = 52.7 bits (124), Expect = 7e-05, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 13/177 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVCYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
S N A + ++ ++ F+ +M + L A + A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPA 182
>gi|125658590|gb|ABN49114.1| beta-lactamase SHV-97 [Enterococcus faecalis]
Length = 286
Score = 52.7 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGKRGARGIVALLGPNNKAER 253
>gi|284486659|gb|ADB90403.1| TEM-1b beta-lactamase [Klebsiella pneumoniae]
Length = 266
Score = 52.7 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/258 (14%), Positives = 72/258 (27%), Gaps = 9/258 (3%)
Query: 6 VIIAMAMLSNIFPFLS-----IAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
A + P + Y LD N+G ++ P+ + S K+
Sbjct: 3 FFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 62
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 63 LLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 122
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + A L +
Sbjct: 123 ANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLL 182
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 183 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 242
Query: 238 S-LIAVILGALDRNTRNK 254
I VI + T ++
Sbjct: 243 PSRIVVIYTTGSQATMDE 260
>gi|46276339|gb|AAS86428.1| TEM beta-lactamase [Acinetobacter sp. U11]
Length = 264
Score = 52.7 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/258 (14%), Positives = 72/258 (27%), Gaps = 9/258 (3%)
Query: 6 VIIAMAMLSNIFPFLS-----IAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
A + P + Y LD N+G ++ P+ + S K+
Sbjct: 1 FFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 61 LLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 120
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + A L +
Sbjct: 121 ANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAAMATTLRKLL 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 181 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 240
Query: 238 S-LIAVILGALDRNTRNK 254
I VI + T ++
Sbjct: 241 PSRIVVIYTTGSQATMDE 258
>gi|146260184|gb|ABQ14422.1| beta-lactamase [uncultured soil bacterium]
gi|146260247|gb|ABQ14446.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 52.7 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + +T+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGVTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|20150560|pdb|1JVJ|A Chain A, Crystal Structure Of N132a Mutant Of Tem-1 Beta-Lactamase
In Complex With A N-Formimidoyl-Thienamycine
Length = 263
Score = 52.7 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDATAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|312184022|gb|ADQ42774.1| beta-lactamase TEM-1 [Acinetobacter baumannii]
Length = 270
Score = 52.7 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 72/236 (30%), Gaps = 6/236 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 33 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 92
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 93 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 152
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 153 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 212
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
K+G I+A+ + I VI G+ + RN+ A +
Sbjct: 213 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEI 268
>gi|261381432|ref|ZP_05986005.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria subflava NJ9703]
gi|284795582|gb|EFC50929.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria subflava NJ9703]
Length = 470
Score = 52.7 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ I+++ ++ + P ++ + + ++G VIAE+ D NPAS KL
Sbjct: 2 KLKSILSIGLMMAVCPSWALDFGRIPENEISVYVQELDSGKVIAEHRADELRNPASTMKL 61
Query: 60 MTAYVVFSF 68
+TA+ F
Sbjct: 62 VTAFTAFRM 70
>gi|48527204|gb|AAT45742.1| beta-lactamase TEM-126 [Escherichia coli]
Length = 286
Score = 52.7 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERETTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|26000705|gb|AAN75444.1| CTX-M-26 beta-lactamase [Klebsiella pneumoniae]
gi|38373218|gb|AAR18979.1| beta-lactamase CTX-M-26 [Klebsiella pneumoniae]
Length = 291
Score = 52.7 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 41/292 (14%), Positives = 81/292 (27%), Gaps = 30/292 (10%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHV 41
MR+ + +++L P + A + L ++ +
Sbjct: 2 MRKSVRRAMLMTTACVSLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQT 61
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M A V + +K +L+ + I + + T
Sbjct: 62 LY--RADERFAMCSTSKVMAAAAVLKQSETQKGLLSQRVEIKPSDLINYNPIAEKHVNGT 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MT + S N + L +K F + + + + L + A
Sbjct: 120 MTFGELSAAALQYSDNTAMNKLIAHLGGPDKVTAFARTIGDDTFRLDRTEPTLNTAIPGD 179
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T L + Q+ + A G KTG
Sbjct: 180 PRDTTTPLAMAQALRNLTLGNALGDTQRAQLVMWLKGNTTGAASIRAGLPTSWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G+
Sbjct: 240 SGDYGTTNDIAVIWPEGRAPLVLVTYFTQSEPKAESRRDVLAAAARIVTDGY 291
>gi|134154077|gb|ABO64442.1| TEM beta-lactamase [Acinetobacter haemolyticus]
Length = 286
Score = 52.7 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 39/274 (14%), Positives = 79/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + +T Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPKTLVKVKDAENQLGARVGYIELDLNSGKILESFRPEKRFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S++ + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQSDVVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|146260092|gb|ABQ14393.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 52.7 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWIEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|28195099|gb|AAO33760.1| TEM-7 beta-lactamase [Escherichia coli]
Length = 261
Score = 52.7 bits (124), Expect = 8e-05, Method: Composition-based stats.
Identities = 39/258 (15%), Positives = 73/258 (28%), Gaps = 14/258 (5%)
Query: 11 AMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ P + ET Y LD N+G ++ P+ + S K+
Sbjct: 1 FFAAFCLPVFAHPETLVKVKDAEDKLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 61 LLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 120
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + A L +
Sbjct: 121 ANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTMPAAMATTLRKLL 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 181 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 240
Query: 238 S-LIAVILGALDRNTRNK 254
I VI + T ++
Sbjct: 241 PSRIVVIYTTGSQATMDE 258
>gi|146260028|gb|ABQ14376.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 52.7 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYLPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|67923291|ref|ZP_00516775.1| similar to Beta-lactamase class A [Crocosphaera watsonii WH 8501]
gi|67854867|gb|EAM50142.1| similar to Beta-lactamase class A [Crocosphaera watsonii WH 8501]
Length = 410
Score = 52.7 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/225 (13%), Positives = 64/225 (28%), Gaps = 8/225 (3%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ K + +D + G P AS K+ F + + L +
Sbjct: 156 AKYPNVKPQAWF-IDLDNGS-YVTYNGTQPVPAASTIKIPVLVAFFEEVDKGNIHLDQML 213
Query: 81 TISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
T++K+ T + +IV S N + + + +N
Sbjct: 214 TMTKDVMVSGSGDMQYMGINKKFTALEVARKMIVISDNTATEMLV-----KQMGGKEVLN 268
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
K G+ T N ++ + T++ D++ L RI+ ++G +
Sbjct: 269 KRFKEWGMKNTEINNILPELEGTNKTSSEDLSKLLARIERGDLISARSRDRLIDIMEGTR 328
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KTG + + + I +
Sbjct: 329 TRTLLPQGLEKQANIAHKTGDIGTIIGDAGIIDMPTGKRYIGAVF 373
>gi|227540925|ref|ZP_03970974.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227183185|gb|EEI64157.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 414
Score = 52.7 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 20 LSIAETNKLPY---------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ A + + D TG + E D P PAS+TK++TA L
Sbjct: 59 PAQAPELEALSQDPALGEFFGIVTDVQTGETVWEKNADVPGRPASITKVLTATAAVHALP 118
Query: 71 EKK 73
Sbjct: 119 AGH 121
>gi|227489337|ref|ZP_03919653.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227090710|gb|EEI26022.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 414
Score = 52.7 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 20 LSIAETNKLPY---------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ A + + D TG + E D P PAS+TK++TA L
Sbjct: 59 PAQAPELEALSQDPALGEFFGIVTDVQTGETVWEKNADVPGRPASITKVLTATAAVHALP 118
Query: 71 EKK 73
Sbjct: 119 AGH 121
>gi|197724699|emb|CAP12351.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 52.7 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/257 (14%), Positives = 64/257 (24%), Gaps = 13/257 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVYAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLTDGMTIGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTGAGERGARG 240
Query: 228 IVASAIQGDQSLIAVIL 244
IVA + V+L
Sbjct: 241 IVALLGPDGKPERIVVL 257
>gi|146260153|gb|ABQ14409.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 52.7 bits (124), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/271 (14%), Positives = 73/271 (26%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A K F+ +M + L A + L
Sbjct: 121 DNTAANLPLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|269218248|ref|ZP_06162102.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinomyces sp. oral taxon 848 str. F0332]
gi|269212376|gb|EEZ78716.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinomyces sp. oral taxon 848 str. F0332]
Length = 447
Score = 52.3 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
A+ S + + E + + D +G IA+ PD P PAS K++TA V
Sbjct: 64 AAVTSALGSLAASPEAHGHVSVVVADAASGKTIAQLEPDTPRAPASNMKIVTAAVALR 121
>gi|256862196|gb|ACV32633.1| beta-lactamase Shv123 [Klebsiella pneumoniae]
Length = 271
Score = 52.3 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----ASKRGARGIVALLGGNIKAER 253
>gi|148767222|gb|ABR10608.1| polyprotein [synthetic construct]
Length = 2975
Score = 52.3 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 78/271 (28%), Gaps = 10/271 (3%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 46 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 105
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 106 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 165
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 166 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 225
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG--- 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 226 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGASL 285
Query: 264 ----FYNKTDRKKINYIIKDFYQQNLSNEVP 290
N K + + +S +
Sbjct: 286 IKHWTSNFDLLKLAGDVESNPGPAGISIALT 316
>gi|53681041|gb|AAU89706.1| LEN-type penicillinase [Klebsiella pneumoniae]
Length = 286
Score = 52.3 bits (123), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 65/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVYAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLTDGMTIGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPDGKPER 253
>gi|192988211|pdb|2V1Z|A Chain A, Structure Of A Tem-1 Beta-Lactamase Insertant
Allosterically Regulated By Kanamycin And Anions.
gi|192988213|pdb|2V20|A Chain A, Structure Of A Tem-1 Beta-Lactamase Insertant
Allosterically Regulated By Kanamycin And Anions.
Complex With Sulfate
Length = 291
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 2/228 (0%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 25 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVK 84
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 85 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 144
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 145 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 204
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K+G I+A+ + V++ +
Sbjct: 205 LPAGWFIADKSGAGRRGSRGIIAALGPDGKPSRIVVIYTTGSRKKTDE 252
>gi|23505688|gb|AAN05029.1| TEM-118 beta-lactamase [Klebsiella oxytoca]
Length = 261
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/249 (13%), Positives = 69/249 (27%), Gaps = 10/249 (4%)
Query: 6 VIIAMAMLSNIFPFLS-----IAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
A + P + Y LD N+G ++ P+ + S K+
Sbjct: 1 FFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 61 LLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 120
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + A L +
Sbjct: 121 ANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPAAMATTLRKLL 180
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 181 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGK 240
Query: 238 --SLIAVIL 244
++ + +
Sbjct: 241 PSRIVVIYM 249
>gi|323358343|ref|YP_004224739.1| D-alanyl-D-alanine carboxypeptidase [Microbacterium testaceum
StLB037]
gi|323274714|dbj|BAJ74859.1| D-alanyl-D-alanine carboxypeptidase [Microbacterium testaceum
StLB037]
Length = 572
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 49/262 (18%), Positives = 89/262 (33%), Gaps = 15/262 (5%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
++A+ P A + L+ G + P + AS+TK++TA VV
Sbjct: 208 SVAVQPTAAPPADPAWPAQGEAAIALEGVPGE--LSSSASAPESIASITKIVTALVVLDR 265
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGS-------TMTLDNALKLLIVKSANDIAV 121
L ++ S + S ++T L+ +++ SAN+ A
Sbjct: 266 LPLAPGEQGPSYAFTQADSADYWQYRARGESSLDVPVDGSLTELQMLQGMLIASANNYAQ 325
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
+A L + F N G++ +N G+ T A + L+ + +
Sbjct: 326 RLASDLFPSNADFAAAANAYLAERGITGITIVNPTGIEAGNTATPA-ALIALAEKALANP 384
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA---SAIQGDQS 238
+ + N N + G G+KTG T + + A +
Sbjct: 385 VIAEIVRTPELTLPGAGSFKNGNPLLA-DPGVVGVKTG-TLDAWNLLSAKDFTIGTVTVR 442
Query: 239 LIAVILGALDRNTRNKVSASLL 260
A +LG + RN+ S L
Sbjct: 443 AYAAVLGQPGPDERNQASRDLY 464
>gi|190334222|gb|ACE73899.1| TEM-1 beta-lactamase [synthetic construct]
Length = 264
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 21 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 80
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 81 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 140
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 141 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 200
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 201 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 257
>gi|169401966|gb|ACA53201.1| TEM beta-lactamase [Bacillus sp. BT-B191]
Length = 272
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 29 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 88
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 89 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 148
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 149 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 208
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 209 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 265
>gi|124365493|gb|ABN09740.1| ampicillin resistance protein [Cloning and transformation vector
pUASTattB]
Length = 276
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 33 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 92
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 93 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 152
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 153 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 212
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 213 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 269
>gi|6137619|pdb|1BT5|A Chain A, Crystal Structure Of The Imipenem Inhibited Tem-1 Beta-
Lactamase From Escherichia Coli
gi|16975249|pdb|1JTG|A Chain A, Crystal Structure Of Tem-1 Beta-Lactamase BETA-Lactamase
Inhibitor Protein Complex
gi|16975251|pdb|1JTG|C Chain C, Crystal Structure Of Tem-1 Beta-Lactamase BETA-Lactamase
Inhibitor Protein Complex
gi|157830129|pdb|1AXB|A Chain A, Tem-1 Beta-Lactamase From Escherichia Coli Inhibited With
An Acylation Transition State Analog
gi|157830461|pdb|1BTL|A Chain A, Crystal Structure Of Escherichia Coli Tem1 Beta-Lactamase
At 1.8 Angstroms Resolution
gi|157833922|pdb|1TEM|A Chain A, 6 Alpha Hydroxymethyl Penicilloic Acid Acylated On The
Tem- 1 Beta-Lactamase From Escherichia Coli
gi|209156443|pdb|3C7U|A Chain A, Structural Insight Into The Kinetics And Cp Of
Interactions Between Tem-1-Lactamase And Blip
gi|209156445|pdb|3C7U|C Chain C, Structural Insight Into The Kinetics And Cp Of
Interactions Between Tem-1-Lactamase And Blip
gi|209156447|pdb|3C7V|A Chain A, Structural Insight Into The Kinetics And Delta-Cp Of
Interactions Between Tem-1 Beta-Lactamase And Blip
gi|209156449|pdb|3C7V|C Chain C, Structural Insight Into The Kinetics And Delta-Cp Of
Interactions Between Tem-1 Beta-Lactamase And Blip
Length = 263
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|241759430|ref|ZP_04757534.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria flavescens SK114]
gi|241320212|gb|EER56545.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria flavescens SK114]
Length = 470
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ I+++ ++ + P ++ + + ++G VIAE+ D NPAS KL
Sbjct: 2 KLKSILSVGLMMAVCPSWALDFGRIPENEISVYVQELDSGKVIAEHRADELRNPASTMKL 61
Query: 60 MTAYVVFSF 68
+TA+ F
Sbjct: 62 VTAFTAFRM 70
>gi|117950175|gb|ABK58471.1| beta-lactamase TEM-63 [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 277
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 13/160 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 5 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 65 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 124
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSAT 150
S N A + ++ ++ F+ +M + L
Sbjct: 125 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEP 164
>gi|2853027|gb|AAC02223.1| extended-spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 273
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 52/160 (32%), Gaps = 13/160 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + FP + ET Y LD N+G ++ P+ +
Sbjct: 5 FRVALIPFFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 65 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 124
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSAT 150
S N A + ++ ++ F+ +M + L
Sbjct: 125 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEP 164
>gi|197724691|emb|CAP12347.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 65/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVYAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLTDGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPDGKPER 253
>gi|154269503|gb|ABS72351.1| beta-lactamase SHV-103 [Klebsiella pneumoniae]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/259 (13%), Positives = 67/259 (25%), Gaps = 15/259 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGAGERGARG 240
Query: 228 IVASAIQGDQ--SLIAVIL 244
IVA ++ ++ + L
Sbjct: 241 IVALLGPNNRAERIVVIYL 259
>gi|125658582|gb|ABN49110.1| beta-lactamase SHV-93 [Klebsiella pneumoniae]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGTVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ +++ L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIDDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|21464485|gb|AAM52207.1| class A beta-lactamase TEM-106 [Escherichia coli]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|237652207|gb|ACR08799.1| beta-lactamase TEM-1 [Chryseobacterium gleum]
gi|238909318|gb|ACR77750.1| beta-lactamase TEM-116 [Burkholderia cenocepacia]
gi|238909320|gb|ACR77751.1| beta-lactamase TEM-116 [Pannonibacter phragmitetus]
gi|239787074|gb|ACS16652.1| BlaTEM-116 [Achromobacter denitrificans]
Length = 177
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 13/160 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 8 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 67
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 68 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 127
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSAT 150
S N A + ++ ++ F+ +M + L
Sbjct: 128 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEP 167
>gi|229470810|gb|ACQ71977.1| blaTEM-116 [Elizabethkingia meningoseptica]
Length = 174
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 13/160 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 5 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 64
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 65 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 124
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSAT 150
S N A + ++ ++ F+ +M + L
Sbjct: 125 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEP 164
>gi|226192761|pdb|3GMW|A Chain A, Crystal Structure Of Beta-Lactamse Inhibitory Protein-I
(Blip-I) In Complex With Tem-1 Beta-Lactamase
gi|226192763|pdb|3GMW|C Chain C, Crystal Structure Of Beta-Lactamse Inhibitory Protein-I
(Blip-I) In Complex With Tem-1 Beta-Lactamase
Length = 261
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 18 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 77
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 78 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 137
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 138 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 197
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 198 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 254
>gi|15988093|pdb|1JTD|A Chain A, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 263
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|146260105|gb|ABQ14397.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVRDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGPRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|323710394|gb|ADY02598.1| beta-lactamase blaTEM [Shigella sonnei]
gi|323710396|gb|ADY02599.1| beta-lactamase blaTEM [Shigella dysenteriae 1]
gi|323710398|gb|ADY02600.1| beta-lactamase blaTEM [Shigella dysenteriae 3]
gi|323710400|gb|ADY02601.1| beta-lactamase blaTEM [Shigella flexneri 2a]
gi|323710404|gb|ADY02603.1| beta-lactamase blaTEM [Shigella dysenteriae 2a]
Length = 263
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 3/228 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 30 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 89
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 90 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 149
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 150 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 209
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNK 254
K+G I+A+ + I VI + T ++
Sbjct: 210 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDE 257
>gi|291586265|gb|ADE18885.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 176
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 51/160 (31%), Gaps = 13/160 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSAT 150
S N A + ++ ++ F+ +M + L
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEP 165
>gi|284486667|gb|ADB90407.1| TEM-1b beta-lactamase [Escherichia coli]
Length = 264
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 3/228 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 30 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 89
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 90 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 149
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 150 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 209
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNK 254
K+G I+A+ + I VI + T ++
Sbjct: 210 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDE 257
>gi|284486665|gb|ADB90406.1| TEM-1b beta-lactamase [Escherichia coli]
Length = 263
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 3/228 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 29 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 88
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 89 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 148
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 149 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 208
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNK 254
K+G I+A+ + I VI + T ++
Sbjct: 209 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDE 256
>gi|284486663|gb|ADB90405.1| TEM-1b beta-lactamase [Klebsiella pneumoniae]
Length = 258
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 3/228 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 29 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 88
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 89 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 148
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 149 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 208
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNK 254
K+G I+A+ + I VI + T ++
Sbjct: 209 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDE 256
>gi|284486661|gb|ADB90404.1| TEM-1b beta-lactamase [Klebsiella pneumoniae]
Length = 265
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 68/228 (29%), Gaps = 3/228 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 30 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 89
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 90 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 149
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 150 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 209
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNK 254
K+G I+A+ + I VI + T ++
Sbjct: 210 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDE 257
>gi|40950646|gb|AAR97951.1| beta-lactamase SHV-5 [Escherichia coli]
Length = 284
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIAEKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|74422855|gb|ABA06588.1| extended-spectrum beta-lactamase SHV-66 [Klebsiella pneumoniae]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADQ 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|17232035|ref|NP_488583.1| hypothetical protein alr4543 [Nostoc sp. PCC 7120]
gi|17133679|dbj|BAB76242.1| alr4543 [Nostoc sp. PCC 7120]
Length = 504
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/235 (14%), Positives = 78/235 (33%), Gaps = 11/235 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
L N+ L+ A N P L+D +TG + + AS K+ F +
Sbjct: 194 LKNVVQQLATATPNLSPGVFLVDLDTGG-YVDINAANALPAASTIKIPILVAFFQDVDAG 252
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
K L +T+ + N +K T + ++ +++ A + + +
Sbjct: 253 KIRLDELLTMKQEMVAGGSGNFQYKPAGTQYPALEVATKMITISDNTATNMLITRLGGME 312
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+N ++ GL+ T N + + T+ +++ + + M +
Sbjct: 313 A----LNERFRSWGLTNTVIRNILPDLPGTNTTSPKELGNIMTMVSQGNLVSMRS---RD 365
Query: 193 LEIKGKKYPNTNWAVGTFLGADGM---KTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ + + + + LGA KTG + + + ++
Sbjct: 366 QILDIMRQTERDNLLPSGLGAGARVYHKTGDIGTMLADAGLIDTPTGKRYVVAVM 420
>gi|146260061|gb|ABQ14386.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEEHFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGKRGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|164449662|gb|ABY56290.1| beta-lactamase SHV-63 [Klebsiella pneumoniae]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 65/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGENVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTNQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|21464496|gb|AAM52215.1| class A beta-lactamase TEM-107 [Klebsiella pneumoniae]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 82/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G + I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGASERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|319639381|ref|ZP_07994131.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria mucosa C102]
gi|317399276|gb|EFV79947.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria mucosa C102]
Length = 470
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ I+ ++++ P ++ + + ++G VI E+ D NPAS KL
Sbjct: 2 KLKNILLISLMVAACPSWALDFGRIPENEISVYVQELDSGKVIVEHRADELRNPASTMKL 61
Query: 60 MTAYVVFSF 68
+TA+ F
Sbjct: 62 VTAFTAFRM 70
>gi|86438856|emb|CAJ70625.1| mutant amyA-blaM fusion protein [unidentified expression vector]
Length = 744
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 501 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 560
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 561 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 620
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 621 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 680
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 681 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 737
>gi|125658584|gb|ABN49111.1| beta-lactamase SHV-94 [Klebsiella pneumoniae]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQHLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|323710416|gb|ADY02609.1| beta-lactamase blaTEM [Shigella sonnei]
gi|323710418|gb|ADY02610.1| beta-lactamase blaTEM [Shigella flexneri 3b]
gi|323710420|gb|ADY02611.1| beta-lactamase blaTEM [Shigella flexneri 1a]
gi|323710422|gb|ADY02612.1| beta-lactamase blaTEM [Shigella flexneri 4a]
Length = 252
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 64/217 (29%), Gaps = 3/217 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 27 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 86
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 87 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 146
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 147 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 206
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVI 243
K+G I+A+ + I VI
Sbjct: 207 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVI 243
>gi|256367760|ref|YP_003108317.1| beta-lactamase TEM precursor [Escherichia coli]
gi|228480697|gb|ACQ42024.1| beta-lactamase TEM precursor [Escherichia coli]
Length = 242
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 64/217 (29%), Gaps = 3/217 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 15 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 74
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 75 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 134
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 135 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 194
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVI 243
K+G I+A+ + I VI
Sbjct: 195 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVI 231
>gi|146260211|gb|ABQ14433.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/271 (14%), Positives = 78/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESLRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N S + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSSVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|146260127|gb|ABQ14403.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/259 (14%), Positives = 69/259 (26%), Gaps = 25/259 (9%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G A
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSG------------AG 228
Query: 234 QGDQSLIAVILGALDRNTR 252
+ I LG + +R
Sbjct: 229 ERGSRGIIAALGPDSKPSR 247
>gi|86609350|ref|YP_478112.1| carboxylesterase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557892|gb|ABD02849.1| carboxylesterase, beta-lactamase family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 426
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/230 (12%), Positives = 68/230 (29%), Gaps = 12/230 (5%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
L+ + TG A PD + AS+ K+ F ++ + L
Sbjct: 162 LAALADQPGLTA-GALFWEVETGAF-AGVRPDQAFPAASVIKIPILLAFFQAVETGQVRL 219
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+T+ ++ + + L++ +++ A + +
Sbjct: 220 DEQLTLREDLKGGGAGVLQTRPLGSQVSALEAATLMITLSDNFATNLI----IDRLGGQE 275
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
+N + GL T + + + ++ RDM L + + L+
Sbjct: 276 TLNQKFRQWGLQHTQI--SWWLPDLEGTNTSSPRDMVWLLS-QVEQGRMLNRRSRDRFLD 332
Query: 195 IKGKKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVI 243
I + + + KTG + + + + +A +
Sbjct: 333 ILWRTQRLSYFRPNLGQEVRIAHKTGTLGSVVGDAGILDLPNGRRYVAAV 382
>gi|172037901|ref|YP_001804402.1| hypothetical protein cce_2988 [Cyanothece sp. ATCC 51142]
gi|171699355|gb|ACB52336.1| hypothetical protein cce_2988 [Cyanothece sp. ATCC 51142]
Length = 413
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/269 (11%), Positives = 75/269 (27%), Gaps = 11/269 (4%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ K + +D + G P AS K+ F + + L +
Sbjct: 151 AKYPNVKPQAWF-MDLDNGA-YVTYNGTQPVPAASTIKIPVLVAFFQEVDKGNMHLDQML 208
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
T++K+ + + + + ++ +++ A + + +N
Sbjct: 209 TMTKDVMVSGSGDMQYMQVDKKFPAIEVATKMIVISDNTATEMLIKQI----GGKEVLNQ 264
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
K G+ T N ++ + T++ D++ L RI+ ++G +
Sbjct: 265 RFKEWGMKHTEIHNILPDLEGTNKTSSEDLSKLLARIERGDLISTRSRDRLIAIMEGTRT 324
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-----GALDRNTRNKV 255
KTG + + + I + + +
Sbjct: 325 RTLLPQGLEKQANIAHKTGDIGTIIGDAGIIDMPTGKRYIGAVFAERAYNDPAGRSLIQD 384
Query: 256 SASLLSMGFYNKTDRKKINYIIKDFYQQN 284
+ + F R I Q+
Sbjct: 385 ISRTVYQHFKYYQPRPVPKVIENKPESQS 413
>gi|94502830|gb|ABF29644.1| beta-lactamase [Klebsiella pneumoniae]
Length = 287
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 65/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVDAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGVEQLDRRIHYRQQDLVDYSPVSEKHLTDGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPDGKPER 253
>gi|30230495|gb|AAP20890.1| extended-spectrum beta-lactamase SHV-48 [Acinetobacter baumannii]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLHKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|73665388|gb|AAZ79401.1| beta-lactamase [Klebsiella pneumoniae]
gi|146336927|gb|ABQ23577.1| LEN-17 [Staphylococcus epidermidis]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 65/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVDAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGVEQLDRRIHYRQQDLVDYSPVSEKHLTDGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPDGKPER 253
>gi|290509632|ref|ZP_06549003.1| beta-lactamase [Klebsiella sp. 1_1_55]
gi|289779026|gb|EFD87023.1| beta-lactamase [Klebsiella sp. 1_1_55]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 65/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVDAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLTDGMTIGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPDGKPER 253
>gi|197724689|emb|CAP12346.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/257 (14%), Positives = 64/257 (24%), Gaps = 13/257 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVDAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLTDGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTGAGERGARG 240
Query: 228 IVASAIQGDQSLIAVIL 244
IVA + V+L
Sbjct: 241 IVALLGPDGKPERIVVL 257
>gi|15721855|gb|AAK69830.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 52.3 bits (123), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 65/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVDAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGVEQLDRRIHYRQQDLVDYSPVSEKHLVDGMTIGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPDGKPER 253
>gi|86450762|gb|ABC96711.1| TEM-149 beta-lactamase [Enterobacter aerogenes]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGVRGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|6457305|gb|AAF09467.1|AF179627_2 Amp [Expression vector pCENEX645]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/237 (14%), Positives = 70/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V + + L I S+N
Sbjct: 43 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLFRIDAGQEQLGRRIHYSQNDLVE 102
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 103 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 162
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 163 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 222
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 223 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|288935596|ref|YP_003439655.1| beta-lactamase [Klebsiella variicola At-22]
gi|288890305|gb|ADC58623.1| Beta-lactamase [Klebsiella variicola At-22]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/257 (14%), Positives = 64/257 (24%), Gaps = 13/257 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVDAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLVDGMTIGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTGAGERGARG 240
Query: 228 IVASAIQGDQSLIAVIL 244
IVA + V+L
Sbjct: 241 IVALLGPDGKPERIVVL 257
>gi|74058441|gb|AAZ98828.1| SHV type extended spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLTSGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|74422853|gb|ABA06587.1| mutant extended-spectrum beta-lactamase SHV-65 [Klebsiella
pneumoniae]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCT 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|197724693|emb|CAP12348.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 65/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVDAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLTDGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPDGKPER 253
>gi|75462898|sp|Q9AHN9|BLA29_KLEPN RecName: Full=Beta-lactamase SHV-29; Flags: Precursor
gi|12247466|gb|AAG49894.1|AF301532_1 beta-lactamase SHV-29 [Klebsiella pneumoniae]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----------LPYYTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGSVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AAERGARGIVALLGPNNKAER 253
>gi|146260080|gb|ABQ14390.1| beta-lactamase [uncultured soil bacterium]
gi|146260110|gb|ABQ14398.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/273 (13%), Positives = 77/273 (28%), Gaps = 18/273 (6%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L + TT
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNE--AIPNGERDTTMPVAMAT 178
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGFTCASGFNIVAS 231
+ R + + ++ K+G I+A+
Sbjct: 179 TLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAA 238
Query: 232 AIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 239 LGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|260578436|ref|ZP_05846350.1| PBP4 family D-alanyl-D-alanine carboxypeptidase, serine-type
[Corynebacterium jeikeium ATCC 43734]
gi|258603458|gb|EEW16721.1| PBP4 family D-alanyl-D-alanine carboxypeptidase, serine-type
[Corynebacterium jeikeium ATCC 43734]
Length = 444
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT---AYVVFSFL 69
+ ++ D TG V+ + PAS TKL T A +
Sbjct: 73 PALGVLSASVTDVETGEVLWAKDENRKLTPASSTKLYTAAAAILALDED 121
>gi|256372037|ref|YP_003109861.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008621|gb|ACU54188.1| peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 [Acidimicrobium
ferrooxidans DSM 10331]
Length = 414
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 61/246 (24%), Positives = 98/246 (39%), Gaps = 21/246 (8%)
Query: 20 LSIAETNKLP----YYTLLDT-NTGHVIAENYPDHP-WNPASLTKLMTAYVVFSFLKEKK 73
A T++ +G E P ASL KLMTA +V
Sbjct: 55 APTAPPITFKHGVQSATVIPALGSGS--LEASPHERPVPIASLAKLMTALIVVRRHPLGS 112
Query: 74 AMLTTPITISKNASE-------YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+T++ S G + L+ L+V+SAN+IA +A
Sbjct: 113 TASGPTLTMTPADVILSDVDVAEDQSTVPITAGERLNERQLLEALLVRSANNIATILATW 172
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ +E FV MN T++ +GL+ THF +A G +TARD+AI++ R++ +
Sbjct: 173 VAGSESAFVATMNATARTMGLTGTHFADASGF-NKATVSTARDVAIVTARVEDNPTLAAI 231
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA----IQGDQSLIAV 242
+ PN A+GT G+K+GFT SG + G+ + + V
Sbjct: 232 ASEHAVTLPGAGTLPNIIQAIGTGD-VVGVKSGFTIWSGGCASIAVRTPTPVGELTSVGV 290
Query: 243 ILGALD 248
++G
Sbjct: 291 VIGEQG 296
>gi|218437495|ref|YP_002375824.1| beta-lactamase protein [Cyanothece sp. PCC 7424]
gi|218170223|gb|ACK68956.1| putative beta-lactamase protein [Cyanothece sp. PCC 7424]
Length = 440
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/264 (13%), Positives = 75/264 (28%), Gaps = 13/264 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
P +D + G I + P++ AS K+ F + K L + ++K+
Sbjct: 159 PGSFFVDLDNGAYI-DVNGQAPFSAASTIKIPVLVAFFEDVDAGKIYLDEELVMTKDVIG 217
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
+ ++ L N I+ A ++ + +N K GL+
Sbjct: 218 SGSGDMQYQPV----GKKYSALETAAKMNIISDNTATNMLIKRLGGKEALNERFKAWGLT 273
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
T N ++ + T+ RD+A L R+ + ++ K
Sbjct: 274 QTVINNPLPDLEGTNTTSPRDLAYLLARVNQGEILSLRSRDRLMGIMQKTKTRTLLPQGI 333
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-----GALDRNTRNKVSASLLSMG 263
KTG + + + + +L T + + +
Sbjct: 334 EKDAIIAHKTGDIGTVLGDAGIIDMPTGKRYVGAVLVKRPHNDYSARTLIQDISRTV--- 390
Query: 264 FYNKTDRKKINYIIKDFYQQNLSN 287
+ + I Q
Sbjct: 391 YQHFKWYIPRPKIEPQITNQPSPE 414
>gi|321173612|gb|ADW77562.1| blaLEN-25 [Klebsiella pneumoniae]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/257 (13%), Positives = 63/257 (24%), Gaps = 13/257 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVDAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S M +
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLVDGMAIGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTGAGERGARG 240
Query: 228 IVASAIQGDQSLIAVIL 244
IVA + V+L
Sbjct: 241 IVALLGPDGKPERIVVL 257
>gi|89072562|ref|ZP_01159134.1| hypothetical
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Photobacterium sp. SKA34]
gi|89051666|gb|EAR57119.1| hypothetical
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Photobacterium sp. SKA34]
Length = 467
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN------KLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
++ +A + F S + + +++ T +I D PAS
Sbjct: 3 KKLFCSALIATSFSSFAAFSPQQAIEHLPKGSDVAFLVVNPATNKIIYSKRADELQAPAS 62
Query: 56 LTKLMTAYVV 65
K++TA
Sbjct: 63 TQKMITALAA 72
>gi|298372227|ref|ZP_06982217.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroidetes oral taxon 274 str. F0058]
gi|298275131|gb|EFI16682.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroidetes oral taxon 274 str. F0058]
Length = 470
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+R+ +++A+ N S A + D TG D PAS+TKL+
Sbjct: 4 IRRLFLLVAIVFYGNTLLPQSSAYQKL--SLIMTDLETGETFVNKNGDQLLTPASITKLI 61
Query: 61 TAYVVFS 67
T
Sbjct: 62 TTATALE 68
>gi|262044380|ref|ZP_06017443.1| beta-lactamase shv-5 [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|259038268|gb|EEW39476.1| beta-lactamase shv-5 [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGLNNKAER 253
>gi|146260009|gb|ABQ14367.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/267 (14%), Positives = 75/267 (28%), Gaps = 9/267 (3%)
Query: 6 VIIAMAMLSNIFPFLS-----IAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
A + P + Y LD N+G ++ P+ + S K+
Sbjct: 5 FFAAFCLPVFALPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 64
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 65 LLCGAVLSRVDAGQEQLGRRIHYSQNGLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 124
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
A + ++ ++ F+ +M + L A + L +
Sbjct: 125 ANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTMPVAMATTLRKLL 184
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ Q+ K + K+G I+A+ +
Sbjct: 185 TGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGLDGK 244
Query: 238 S-LIAVILGALDRNTRNKVSASLLSMG 263
I VI + T ++ + + +G
Sbjct: 245 PSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|77021517|gb|ABA60617.1| TEM extended-spectrum beta-lactamase [Shigella flexneri]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/274 (14%), Positives = 78/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNGGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|60594088|pdb|1XXM|A Chain A, The Modular Architecture Of Protein-Protein Binding Site
gi|60594090|pdb|1XXM|B Chain B, The Modular Architecture Of Protein-Protein Binding Site
Length = 263
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVA 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 ASPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|75451268|sp|Q93LM8|BLA34_ECOLX RecName: Full=Beta-lactamase SHV-34; Flags: Precursor
gi|14532427|gb|AAK64187.1| extended spectrum beta-lactamase SHV-34 [Escherichia coli]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/259 (13%), Positives = 69/259 (26%), Gaps = 15/259 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----------LPYYTLLDTNTGHVIAENYPDH 49
MR F + I + + + + + +D +G + D
Sbjct: 1 MRYFRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGSVGMIEMDLASGRTLTAWRADG 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG +
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASERGARG 240
Query: 228 IVASAIQGDQ--SLIAVIL 244
IVA ++ ++ + L
Sbjct: 241 IVALLGPNNKAERIVVIYL 259
>gi|313510884|gb|ADR66517.1| beta-lactamase SHV-135 [Escherichia coli]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + K +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLKQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMTATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|297155635|gb|ADI05347.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Streptomyces
bingchenggensis BCW-1]
Length = 525
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D ++G V+ +++PD PAS TKL T+
Sbjct: 52 AAGVVVADADSGAVLYQHHPDDRLMPASNTKLFTSAAAM 90
>gi|315419959|gb|ADU15837.1| BlaSHV132 [Klebsiella pneumoniae]
Length = 286
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMLSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|46276337|gb|AAS86427.1| inhibitor-resistant TEM beta-lactamase [Escherichia coli]
Length = 232
Score = 51.9 bits (122), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 13/173 (7%)
Query: 8 IAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPASL 56
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 LIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 FKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSD 120
Query: 117 NDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
N A + ++ ++ F+ +M + L A + A
Sbjct: 121 NTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPA 173
>gi|61741615|gb|AAX54694.1| beta-lactamase CTX-M-39 [Escherichia coli]
Length = 291
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/292 (14%), Positives = 81/292 (27%), Gaps = 30/292 (10%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHV 41
MR+ + +++L P + A + L ++ +
Sbjct: 2 MRKSVRRAMLMTTACVSLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQT 61
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M A V + +K +L+ + I + + T
Sbjct: 62 LY--RADERFAMCSTSKVMAAAAVLKQSETQKGLLSQRVEIKPSDLINYNPIAEKHVNGT 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MT + S N + L +K F + + + + L + A
Sbjct: 120 MTFGELSAAALQYSDNTAMNKLIAHLGGPDKVTAFARTIGDDTFRLDRTEPTLNTAIPGD 179
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T L + Q+ + A G KTG
Sbjct: 180 PRDTTTPLAMAQALRNLTLGNALGDTQRAQLVMWLKGNTTGAASIQAGLPTSWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G+
Sbjct: 240 SGDYGTTNDIAVIWPEGRAPLVLVTYFTQSEPKAESRRDVLAAAARIVTDGY 291
>gi|330830381|ref|YP_004393333.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Aeromonas veronii B565]
gi|328805517|gb|AEB50716.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Aeromonas veronii B565]
Length = 479
Score = 51.9 bits (122), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ L+ S + Y ++ N G V + D PAS K++
Sbjct: 1 MQRLLIGFCALFSSLAAHAAPLTPPQGGQYAIMVQGNNG-VEFARHADQMIAPASTMKVL 59
Query: 61 TAYVV 65
TA
Sbjct: 60 TALAA 64
>gi|225024676|ref|ZP_03713868.1| hypothetical protein EIKCOROL_01558 [Eikenella corrodens ATCC
23834]
gi|224942565|gb|EEG23774.1| hypothetical protein EIKCOROL_01558 [Eikenella corrodens ATCC
23834]
Length = 475
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ L+ A+ + + + D ++G V+ + D NPAS KL+T
Sbjct: 14 RLLLTFALFFYFQVAFAIDFGRIQPDEAAVYVQDLDSGEVLLAHRADVSMNPASTMKLVT 73
Query: 62 AYVVFS 67
+
Sbjct: 74 TFAALR 79
>gi|76363886|sp|P0A9Z8|BLA2_KLEPN RecName: Full=Beta-lactamase SHV-2; AltName: Full=SHV-2A; Flags:
Precursor
gi|76363888|sp|P0AA00|BLA2_SALTY RecName: Full=Beta-lactamase SHV-2; AltName: Full=SHV-2A; Flags:
Precursor
gi|96567|pir||S16146 beta-lactamase (EC 3.5.2.6) 2A precursor - Klebsiella pneumoniae
plasmids
gi|320431|pir||A60679 beta-lactamase (EC 3.5.2.6) SHV-2 precursor - Salmonella
typhimurium plasmid pHT1
gi|18656790|gb|AAL77980.1|AF462393_1 extended-spectrum beta-lactamase SHV-2a [Klebsiella pneumoniae]
gi|43796|emb|CAA37813.1| beta-lactamase [Klebsiella pneumoniae]
gi|972891|gb|AAA75015.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|1185123|emb|CAA59058.1| beta-lactamase SHV-2a [Klebsiella pneumoniae]
gi|2113849|emb|CAA66730.1| beta-lactamase SHV-2a [Klebsiella pneumoniae]
gi|3342495|gb|AAC27624.1| beta-lactamase [Pseudomonas aeruginosa]
gi|114804330|gb|ABI81407.1| beta-lactamase SHV-2a [Enterobacter cloacae]
gi|191174843|emb|CAQ43038.1| beta-lactamase class A SHV-2a [Pseudomonas aeruginosa]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/259 (13%), Positives = 68/259 (26%), Gaps = 15/259 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG +
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASERGARG 240
Query: 228 IVASAIQGDQ--SLIAVIL 244
IVA ++ ++ + L
Sbjct: 241 IVALLGPNNKAERIVVIYL 259
>gi|301059978|ref|ZP_07200852.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[delta proteobacterium NaphS2]
gi|300445857|gb|EFK09748.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[delta proteobacterium NaphS2]
Length = 418
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 13/81 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT------------LLDTNTGHVIAENYPD 48
+++++ + L I K + LL T G V+ E D
Sbjct: 12 LKKWVSLSCAFFLCQILILF-YPHGAKAKKWLPCNQQIKTTDSFLLATPQGKVLFEKNAD 70
Query: 49 HPWNPASLTKLMTAYVVFSFL 69
PAS K++T+
Sbjct: 71 KQRVPASTLKILTSLAALDHF 91
>gi|22725669|gb|AAN04882.1| beta-lactamase SHV-40 [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGGRGIVALLGPNNKAER 253
>gi|218091988|emb|CAP58290.1| beta-lactamase [Klebsiella pneumoniae]
gi|223635897|emb|CAQ03506.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/259 (13%), Positives = 68/259 (26%), Gaps = 15/259 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRFIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG +
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASERGARG 240
Query: 228 IVASAIQGDQ--SLIAVIL 244
IVA ++ ++ + L
Sbjct: 241 IVALLGPNNKAERIVVIYL 259
>gi|294813214|ref|ZP_06771857.1| putative penicillin-binding exported protein [Streptomyces
clavuligerus ATCC 27064]
gi|326441674|ref|ZP_08216408.1| d-alanyl-d-alanine
carboxypeptidase/d-alanyl-d-alanine-endopeptidase
[Streptomyces clavuligerus ATCC 27064]
gi|294325813|gb|EFG07456.1| putative penicillin-binding exported protein [Streptomyces
clavuligerus ATCC 27064]
Length = 549
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D TG + + D PAS TK++T+
Sbjct: 70 SVVVADAVTGERLYQRNADDRLVPASNTKIVTSIAAM 106
>gi|224223446|gb|ACN39713.1| SHV-type beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWKTELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|254393705|ref|ZP_05008828.1| penicillin binding protein [Streptomyces clavuligerus ATCC 27064]
gi|197707315|gb|EDY53127.1| penicillin binding protein [Streptomyces clavuligerus ATCC 27064]
Length = 581
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D TG + + D PAS TK++T+
Sbjct: 102 SVVVADAVTGERLYQRNADDRLVPASNTKIVTSIAAM 138
>gi|22725671|gb|AAN04883.1| beta-lactamase SHV-41 [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATFGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|146260089|gb|ABQ14392.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----------KLP-YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + + P + ET Y LD N+G ++ P + S
Sbjct: 1 ALIPSFAAFCLPVFAHPETLVKVKDAGDQLGARVGYIELDLNSGKILESFRPKERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|190576908|ref|YP_001966240.1| blaSHV2A extended spectrum beta-lactamase SHV-2 [Klebsiella
pneumoniae]
gi|76363885|sp|P0A9Z7|BLA2_ECOLX RecName: Full=Beta-lactamase SHV-2; AltName: Full=SHV-2A; Flags:
Precursor
gi|76363887|sp|P0A9Z9|BLA2_KLEPO RecName: Full=Beta-lactamase SHV-2; AltName: Full=SHV-2A; Flags:
Precursor
gi|5002314|gb|AAD37413.1|AF148851_1 beta-lactamase SHV-2 [Escherichia coli]
gi|12034666|gb|AAG45956.1|AF282921_2 SHV-2 extended spectrum beta-lactamase [Shigella flexneri]
gi|43790|emb|CAA37524.1| unnamed protein product [Klebsiella pneumoniae subsp. ozaenae]
gi|48990|emb|CAA44025.1| SHV2A beta-lactamase [Klebsiella pneumoniae]
gi|150489|gb|AAA25526.1| beta-lactamase [Plasmid pBP60-1]
gi|37654370|gb|AAQ96282.1| extended-spectrum beta-lactamase SHV-2 [Klebsiella pneumoniae]
gi|51105093|gb|AAT97106.1| extended-spectrum beta-lactamase SHV-2 [Klebsiella pneumoniae]
gi|51105095|gb|AAT97107.1| extended-spectrum beta-lactamase SHV-2 [Klebsiella pneumoniae]
gi|51105099|gb|AAT97109.1| extended-spectrum beta-lactamase SHV-2 [Klebsiella pneumoniae]
gi|51105105|gb|AAT97112.1| extended-spectrum beta-lactamase SHV-2 [Escherichia coli]
gi|51105109|gb|AAT97114.1| extended-spectrum beta-lactamase SHV-2 [Klebsiella pneumoniae]
gi|110264492|gb|ABG56855.1| blaSHV2A extended spectrum beta-lactamase SHV-2 [Klebsiella
pneumoniae]
gi|166092032|gb|ABY82053.1| beta-lactamase SHV-2 [Escherichia coli]
gi|257043750|gb|ACV33203.1| beta-lactamase blaSHV-2a [Klebsiella pneumoniae]
gi|262477943|gb|ACY68241.1| beta-lactamase blaSHV-2a [Klebsiella pneumoniae]
gi|293652428|gb|ADE60794.1| beta-lactamase SHV-2 [Enterobacter aerogenes]
gi|295917912|gb|ADG60243.1| BlaSHV-2 [Escherichia coli]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/259 (13%), Positives = 68/259 (26%), Gaps = 15/259 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG +
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASERGARG 240
Query: 228 IVASAIQGDQ--SLIAVIL 244
IVA ++ ++ + L
Sbjct: 241 IVALLGPNNKAERIVVIYL 259
>gi|164665324|gb|ABY66124.1| SHV-like beta-lactamase [Escherichia coli]
Length = 283
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A I +LG ++ R
Sbjct: 233 ----ASXRGARGIVALLGPNNKAER 253
>gi|86438858|emb|CAJ70627.1| mutant amyA-blaM fusion protein [unidentified expression vector]
Length = 455
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 212 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 271
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 272 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 331
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 332 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 391
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 392 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 448
>gi|9257166|pdb|1CK3|A Chain A, N276d Mutant Of Escherichia Coli Tem-1 Beta-Lactamase
Length = 263
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 71/236 (30%), Gaps = 6/236 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
K+G I+A+ + I VI G+ + R++ A +
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERDRQIAEI 255
>gi|165972122|dbj|BAF99008.1| beta-lactamase SHV [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ +++ L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIDDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|317446360|emb|CBW46935.1| extended-spectrum beta-lactamase [Escherichia coli]
Length = 291
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/292 (14%), Positives = 81/292 (27%), Gaps = 30/292 (10%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHV 41
MR+ + +++L P + A + L ++ +
Sbjct: 2 MRKSVRRAMLMTTACVSLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQT 61
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M A V + +K +L+ + I + + T
Sbjct: 62 LY--RADERFAMCSTSKVMAAAAVLKQSETQKGLLSQRVEIKPSDLINYNPIAEKHVNGT 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MT + S N + L +K F + + + + L + A
Sbjct: 120 MTFGELSAAALQYSDNTAMNKLIAHLGGPDKVTAFARTIGDDTFRLDRTEPTLNTAIPGD 179
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T L + Q+ + A G KTG
Sbjct: 180 PRDTTTPLAMAQALRNLTLGNALGDTQRAQLVMWLKGNTTGAASIQAGLPTSWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G+
Sbjct: 240 SGGYGTTNDIAVIWPEGRAPLVLVTYFTQSEPKAESRRDVLAAAARIVTDGY 291
>gi|66220180|gb|AAY43008.1| beta-lactamase CTX-M-41 [Proteus mirabilis]
Length = 291
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/292 (14%), Positives = 82/292 (28%), Gaps = 30/292 (10%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHV 41
MR+ + +++L P + A + L ++ +
Sbjct: 2 MRKSVRRAMLMTTACVSLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQT 61
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M A V + +K +L+ + I + + T
Sbjct: 62 LY--RADERFAMCSTSKVMAAAAVLKQSETQKGLLSQRVEIKPSDLVNYNPIAEKHVNGT 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MT + + S N + L +K F + + + + L + A
Sbjct: 120 MTFGELIAAALQYSDNTAMNKLIAHLGGPDKVTAFARTIGDDTFRLDRTEPTLNTAIPGD 179
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T L + Q+ + A G KTG
Sbjct: 180 PRDTTTPLAMAQALRNLTLGNALGDTQRAQLVMWLKGNTTGAASIQAGLPTSWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G+
Sbjct: 240 SGGYGTTNDIAVIWPEGRAPLVLVTYFTQSEPKAESRRDVLAAAARIVTDGY 291
>gi|15721851|gb|AAK69828.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 69/265 (26%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+I S N A + F++ +++ L T A T A
Sbjct: 121 AVITMSDNSAANLLLATVGGPAGLTAFLRQIDDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|25029101|ref|NP_739155.1| putative D-alanyl-D-alanine carboxypeptidase [Corynebacterium
efficiens YS-314]
gi|259505901|ref|ZP_05748803.1| penicillin-binding protein, D-ala-D-ala carboxypeptidase
[Corynebacterium efficiens YS-314]
gi|23494388|dbj|BAC19355.1| putative D-alanyl-D-alanine carboxypeptidase [Corynebacterium
efficiens YS-314]
gi|259166505|gb|EEW51059.1| penicillin-binding protein, D-ala-D-ala carboxypeptidase
[Corynebacterium efficiens YS-314]
Length = 421
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
DT TG VI PD P PAS TK++TA L + T
Sbjct: 83 DTATGEVIWSQNPDTPVRPASATKILTAAAALYELGWDDTIHTD 126
>gi|159576920|dbj|BAF92780.1| beta-lactamase SHV-60 [Klebsiella pneumoniae]
gi|160858184|emb|CAI30649.2| beta-lactamase SHV-60 [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMTATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|9858194|gb|AAG01039.1|AF293345_1 SHV-27 beta lactamase [Klebsiella pneumoniae]
gi|221149266|gb|ACM04457.1| SHV-27 beta-lactamase [Klebsiella pneumoniae]
gi|225697591|gb|ACO07068.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ +++ L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIDDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|160948455|emb|CAJ47135.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPTGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|46309224|emb|CAG25835.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 57/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + +L T
Sbjct: 93 SEKHLVDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTHLDRWETA 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG + R
Sbjct: 213 WFIADKTG------------AGERGARGIVALLGPDGKPER 241
>gi|11364578|gb|AAC32889.2| beta-lactamase TEM-43 [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A + T A
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDHWEPELNEAIPNDERDTTTPAAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|74422859|gb|ABA06590.1| mutant extended-spectrum beta-lactamase SHV-69 [Klebsiella
pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLTDGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|282852262|ref|ZP_06261608.1| beta-lactamase [Lactobacillus gasseri 224-1]
gi|282556591|gb|EFB62207.1| beta-lactamase [Lactobacillus gasseri 224-1]
Length = 257
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 52/174 (29%), Gaps = 8/174 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLS-----IAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPAS 55
R + + A + P + Y LD N+G ++ P+ + S
Sbjct: 39 RPYSLFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 98
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 99 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 158
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
N A + ++ ++ F+ +M + L A +
Sbjct: 159 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPV 212
>gi|211774526|gb|ABV57756.3| beta-lactamase blaCTX-M [Klebsiella pneumoniae]
Length = 291
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLEQSETQKQLLNQPVEIQPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S + + F + + + + L + A T
Sbjct: 129 ALQYSDHTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|30984107|gb|AAP41108.1| beta-lactamase SHV-50 [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + + + + +V KTG
Sbjct: 181 SMTATLRKLLTSQRLSARSQRHLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|146260068|gb|ABQ14388.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 13/174 (7%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
N A + ++ ++ F+ +M + L A + G
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERGTTMPV 174
>gi|160948457|emb|CAJ47136.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGSPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|65994176|gb|AAY42633.1| beta-lactamase SHV-70 [Enterobacter cloacae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGVTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|9910644|sp|O08337|BLA8_ECOLX RecName: Full=Beta-lactamase SHV-8; Flags: Precursor
gi|1928922|gb|AAB51384.1| beta-lactamase [Escherichia coli]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARNTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|146260059|gb|ABQ14385.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/271 (14%), Positives = 76/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I +N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYPQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|7109289|gb|AAF36719.1|AF227204_1 beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMTATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|146260207|gb|ABQ14431.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/182 (15%), Positives = 52/182 (28%), Gaps = 13/182 (7%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SW 175
Sbjct: 181 RR 182
>gi|56463109|gb|AAV91696.1| beta-lactamase TEM [Escherichia coli]
Length = 178
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 50/154 (32%), Gaps = 2/154 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 21 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 80
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 81 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 140
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A + A L + D+
Sbjct: 141 WEPELNEAIPNDERDTTMPAAMATTLRKLLTGDW 174
>gi|72163302|ref|YP_290959.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Thermobifida fusca
YX]
gi|71917034|gb|AAZ56936.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Thermobifida fusca
YX]
Length = 464
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++D T + D PAS TK++T+
Sbjct: 82 SAYVIDAETHQELYARDADEGLVPASTTKVVTSVAAL 118
>gi|9910661|sp|Q9S169|BLA24_ECOLX RecName: Full=Beta-lactamase SHV-24; Flags: Precursor
gi|6009582|dbj|BAA84973.1| beta-lactamase [Escherichia coli]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A G T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARGTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|168703612|ref|ZP_02735889.1| serine-type D-Ala-D-Ala carboxypeptidase [Gemmata obscuriglobus
UQM 2246]
Length = 520
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 19 FLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ A K + ++D TG + PD PAS+TKL T
Sbjct: 35 AITGAPDYKHASWGILIVDAKTGGTVYARNPDAMLAPASVTKLFTCAAAL 84
>gi|160948453|emb|CAJ47134.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEVLPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|29893408|gb|AAP03063.1| SHV-48 beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTIGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|10945348|gb|AAG24519.1| beta-lactamase SHV-11 [Klebsiella pneumoniae]
Length = 260
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|9910630|sp|Q9S424|BLA13_KLEPN RecName: Full=Beta-lactamase SHV-13; Flags: Precursor
gi|5457154|gb|AAD43815.1|AF164577_1 beta lactamase SHV-13 [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AAERGARGIVALLGPNNKAER 253
>gi|152970159|ref|YP_001335268.1| beta-lactamase SHV-11 [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|238894633|ref|YP_002919367.1| extended-spectrum beta-lactamase SHV-11 [Klebsiella pneumoniae
NTUH-K2044]
gi|2113851|emb|CAA66729.1| beta-lactamase SHV-1a [Klebsiella pneumoniae]
gi|3808170|emb|CAA77111.1| beta-lactamase [Shigella dysenteriae]
gi|31096318|gb|AAP43779.1| beta-lactamase SHV-11 [Escherichia coli]
gi|46452172|gb|AAS98183.1| beta-lactamase [Klebsiella pneumoniae]
gi|77702544|gb|ABB01157.1| extended-spectrum beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|77702546|gb|ABB01158.1| extended-spectrum beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|77702550|gb|ABB01160.1| extended-spectrum beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|77702552|gb|ABB01161.1| extended-spectrum beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|77702554|gb|ABB01162.1| extended-spectrum beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|85003007|gb|AAZ98824.3| SHV type extended spectrum beta-lactamase [Klebsiella pneumoniae]
gi|85003009|gb|AAZ98827.3| SHV type extended spectrum beta-lactamase [Klebsiella pneumoniae]
gi|85068489|gb|AAZ98825.3| SHV type extended spectrum beta-lactamase [Escherichia coli]
gi|112785124|gb|ABI20752.1| SHV extended-spectrum beta-lactamase [Klebsiella pneumoniae]
gi|124053903|gb|ABM89158.1| SHV type beta lactamase [Klebsiella pneumoniae]
gi|124053905|gb|ABM89159.1| SHV type beta lactamase [Klebsiella pneumoniae]
gi|124053909|gb|ABM89161.1| SHV type beta lactamase [Klebsiella pneumoniae]
gi|124053911|gb|ABM89162.1| SHV type beta lactamase [Klebsiella pneumoniae]
gi|124053913|gb|ABM89163.1| SHV type beta lactamase [Klebsiella pneumoniae]
gi|124053915|gb|ABM89164.1| SHV type beta lactamase [Klebsiella pneumoniae]
gi|150955008|gb|ABR77038.1| extended-spectrum beta-lactamase SHV-11 [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|166092028|gb|ABY82051.1| beta-lactamase SHV-11 [Escherichia coli]
gi|221149261|gb|ACM04455.1| SHV-11 beta-lactamase [Klebsiella pneumoniae]
gi|225697589|gb|ACO07067.1| beta-lactamase [Klebsiella pneumoniae]
gi|225907196|gb|ACO36248.1| beta-lactamase SHV-11 [Proteus mirabilis]
gi|238546949|dbj|BAH63300.1| extended-spectrum beta-lactamase SHV-11 [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|256594258|gb|ACV03882.1| beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|256862160|gb|ACV32618.1| beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|256862162|gb|ACV32619.1| beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|256862164|gb|ACV32620.1| beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|256862166|gb|ACV32621.1| beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|256862168|gb|ACV32622.1| beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|256862170|gb|ACV32623.1| beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|257043736|gb|ACV33196.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|257043748|gb|ACV33202.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|257043752|gb|ACV33204.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|257043754|gb|ACV33205.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|257043770|gb|ACV33213.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|257043778|gb|ACV33217.1| beta-lactamase bla-SHV-11 [Klebsiella pneumoniae]
gi|257043800|gb|ACV33228.1| beta-lactamase bla-SHV-11 [Klebsiella pneumoniae]
gi|257043804|gb|ACV33230.1| beta-lactamase bla-SHV-11 [Klebsiella pneumoniae]
gi|259089728|gb|ACV91691.1| broad-spectrum beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|259089737|gb|ACV91699.1| broad-spectrum beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|262477921|gb|ACY68230.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|262477923|gb|ACY68231.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|262477925|gb|ACY68232.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|262477927|gb|ACY68233.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|262477929|gb|ACY68234.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|262477931|gb|ACY68235.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|262477935|gb|ACY68237.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|262477939|gb|ACY68239.1| beta-lactamase blaSHV-11 [Klebsiella pneumoniae]
gi|281333460|gb|ADA61019.1| SHV-11 beta-lactamase [Klebsiella pneumoniae]
gi|301133846|gb|ADK63437.1| SHV-11 beta-lactamase [Klebsiella pneumoniae]
gi|313766524|gb|ADR80604.1| SHV-11 beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|18482389|gb|AAL68926.1| beta-lactamase SHV-35 [Klebsiella pneumoniae]
Length = 286
Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDKQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGGRGIVALLGPNNKAER 253
>gi|10242338|gb|AAG15384.1|AF299299_1 beta-lactamase SHV-28 [Klebsiella pneumoniae]
gi|23194362|gb|AAN15132.1| beta-lactamase SHV-28 [Klebsiella pneumoniae]
gi|83272143|gb|ABC00739.1| beta-lactamase SHV-28 [Klebsiella pneumoniae]
gi|167888215|gb|ACA09611.1| extended spectrum beta-lactamase SHV-28 [Klebsiella pneumoniae]
gi|221149269|gb|ACM04458.1| SHV-28 beta-lactamase [Klebsiella pneumoniae]
gi|313766530|gb|ADR80607.1| SHV-28 beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRFIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|218091992|emb|CAP58292.1| beta-lactamase [Klebsiella pneumoniae]
gi|223635901|emb|CAQ03508.1| beta-lactamase [Klebsiella pneumoniae]
gi|313766528|gb|ADR80606.1| SHV-108 beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLAIVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|219958084|gb|ACL68096.1| beta-lactamase [Klebsiella pneumoniae]
gi|300510894|gb|ADK25062.1| TEM beta-lactamase [Serratia marcescens]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/276 (13%), Positives = 71/276 (25%), Gaps = 17/276 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + + + + + + Y +D +G +A
Sbjct: 1 MRYIRLCLFSLIAALPLAVFASPPPLEQITRSESQLAGRVGYVEMDLASGRTLAAWRASE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPLMSTFKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTSHTLSARSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRG 240
Query: 228 IVASAIQGDQ--SLIAVILGAL--DRNTRNKVSASL 259
IVA + ++ + L RN+ A +
Sbjct: 241 IVALLGPNGKAERIVVIYLRDTPATMAERNQQIARI 276
>gi|146260240|gb|ABQ14444.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/259 (14%), Positives = 69/259 (26%), Gaps = 25/259 (9%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIRYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G A
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSG------------AG 228
Query: 234 QGDQSLIAVILGALDRNTR 252
+ I LG + +R
Sbjct: 229 ERGSRGIITALGPDSKPSR 247
>gi|11527844|gb|AAG37024.1|AF277571_1 putative D,D-carboxypeptidase [Enterococcus faecium]
Length = 91
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 190 IKGLEIKGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
K + Y N+N + G+KTG + G +V++A+ ++ I V++
Sbjct: 11 EKWPNGREVTYNNSNELLDPNSPYYRPEVIGLKTGTSSLGGACVVSAAVIDGETYICVVM 70
Query: 245 GALDRNTRNKVSASLLS 261
G+ + +R + S ++L
Sbjct: 71 GS-TKESRFQDSVAILD 86
>gi|218684515|gb|ACL01091.1| SHV beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|218091981|emb|CAP58287.1| beta-lactamase [Klebsiella pneumoniae]
gi|223635891|emb|CAQ03503.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|154269430|gb|ABS72342.1| extended-spectrum beta-lactamase SHV-102 [Escherichia coli]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AAERGARGIVALLGPNNKAER 253
>gi|134044832|ref|YP_001102238.1| beta-lactamase [Yersinia pestis biovar Orientalis str. IP275]
gi|165937979|ref|ZP_02226539.1| beta-lactamase [Yersinia pestis biovar Orientalis str. IP275]
gi|165937993|ref|ZP_02226553.1| beta-lactamase [Yersinia pestis biovar Orientalis str. IP275]
gi|165940285|ref|ZP_02228812.1| beta-lactamase [Yersinia pestis biovar Orientalis str. IP275]
gi|330006575|ref|ZP_08305647.1| beta-lactamase [Klebsiella sp. MS 92-3]
gi|83288403|sp|P0AD63|BLA1_ECOLX RecName: Full=Beta-lactamase SHV-1; AltName: Full=PIT-2; Flags:
Precursor
gi|83288404|sp|P0AD64|BLA1_KLEPN RecName: Full=Beta-lactamase SHV-1; AltName: Full=PIT-2; Flags:
Precursor
gi|223365818|pdb|3D4F|A Chain A, Shv-1 Beta-Lactamase Complex With Ln1-255
gi|5002312|gb|AAD37412.1|AF148850_1 SHV-1 beta-lactamase [Escherichia coli HB101]
gi|18656796|gb|AAL77983.1|AF462396_1 extended-spectrum beta-lactamase SHV-1 [Acinetobacter sp. SUN-72]
gi|2113853|emb|CAA66727.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|2113855|emb|CAA66726.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|2113863|emb|CAA66728.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|4337048|gb|AAD18054.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|54661908|gb|AAV38100.1| beta-lactamase SHV-1b [Acinetobacter baumannii]
gi|56181494|gb|AAV83794.1| broad-spectrum beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|74058437|gb|AAZ98826.1| SHV type extended spectrum beta-lactamase [Klebsiella pneumoniae]
gi|77702548|gb|ABB01159.1| extended-spectrum beta-lactamase SHV-11 [Klebsiella pneumoniae]
gi|86278448|gb|ABC88472.1| bla-SHV type 1 [Klebsiella pneumoniae]
gi|94502886|gb|ABF29674.1| beta-lactamase [Klebsiella pneumoniae]
gi|124053917|gb|ABM89165.1| SHV type beta lactamase [Klebsiella pneumoniae]
gi|124053919|gb|ABM89166.1| SHV type beta lactamase [Klebsiella pneumoniae]
gi|124053921|gb|ABM89167.1| SHV type beta lactamase [Klebsiella pneumoniae]
gi|124053923|gb|ABM89168.1| SHV type beta lactamase [Klebsiella pneumoniae]
gi|133905366|gb|ABO42128.1| beta-lactamase [Yersinia pestis biovar Orientalis str. IP275]
gi|161703205|gb|ABX76424.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|164665322|gb|ABY66123.1| SHV-like beta-lactamase [Escherichia coli]
gi|165911792|gb|EDR30442.1| beta-lactamase [Yersinia pestis biovar Orientalis str. IP275]
gi|165914002|gb|EDR32619.1| beta-lactamase [Yersinia pestis biovar Orientalis str. IP275]
gi|165914016|gb|EDR32633.1| beta-lactamase [Yersinia pestis biovar Orientalis str. IP275]
gi|221149258|gb|ACM04454.1| SHV-1 beta-lactamase [Klebsiella pneumoniae]
gi|225697593|gb|ACO07069.1| beta-lactamase [Klebsiella pneumoniae]
gi|238864064|gb|ACR66308.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|238864066|gb|ACR66309.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|238864070|gb|ACR66311.1| beta-lactamase SHV-1 [Raoultella terrigena]
gi|238864074|gb|ACR66313.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|238864084|gb|ACR66318.1| beta-lactamase SHV-1 [Raoultella terrigena]
gi|238864086|gb|ACR66319.1| beta-lactamase SHV-1 [Klebsiella oxytoca]
gi|238864088|gb|ACR66320.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|238864092|gb|ACR66322.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|238864094|gb|ACR66323.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|238864102|gb|ACR66327.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|256033060|gb|ACU57153.1| beta-lactamase blaSHV-1 [Klebsiella pneumoniae]
gi|256862158|gb|ACV32617.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|257043742|gb|ACV33199.1| beta-lactamase blaSHV-1 [Klebsiella pneumoniae]
gi|257043744|gb|ACV33200.1| beta-lactamase blaSHV-1 [Klebsiella pneumoniae]
gi|257043756|gb|ACV33206.1| beta-lactamase blaSHV-1 [Klebsiella pneumoniae]
gi|257043760|gb|ACV33208.1| beta-lactamase blaSHV-1 [Klebsiella pneumoniae]
gi|257043762|gb|ACV33209.1| beta-lactamase blaSHV-1 [Klebsiella pneumoniae]
gi|257043764|gb|ACV33210.1| beta-lactamase blaSHV-1 [Klebsiella pneumoniae]
gi|257043772|gb|ACV33214.1| beta-lactamase blaSHV-1 [Klebsiella pneumoniae]
gi|257043774|gb|ACV33215.1| beta-lactamase bla-SHV-1 [Klebsiella pneumoniae]
gi|257043776|gb|ACV33216.1| beta-lactamase bla-SHV-1 [Klebsiella pneumoniae]
gi|257043780|gb|ACV33218.1| beta-lactamase bla-SHV-1 [Klebsiella pneumoniae]
gi|257043782|gb|ACV33219.1| beta-lactamase bla-SHV-1 [Klebsiella pneumoniae]
gi|257043784|gb|ACV33220.1| beta-lactamase bla-SHV-1 [Klebsiella pneumoniae]
gi|257043790|gb|ACV33223.1| beta-lactamase bla-SHV-1 [Klebsiella pneumoniae]
gi|257043792|gb|ACV33224.1| beta-lactamase bla-SHV-1 [Klebsiella pneumoniae]
gi|257043794|gb|ACV33225.1| beta-lactamase bla-SHV-1 [Klebsiella pneumoniae]
gi|257043798|gb|ACV33227.1| beta-lactamase bla-SHV-1 [Klebsiella pneumoniae]
gi|257043802|gb|ACV33229.1| beta-lactamase bla-SHV-1 [Klebsiella pneumoniae]
gi|257043806|gb|ACV33231.1| beta-lactamase bla-SHV-1 [Klebsiella pneumoniae]
gi|257043808|gb|ACV33232.1| beta-lactamase bla-SHV-1 [Klebsiella pneumoniae]
gi|262212665|gb|ACY35991.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|262212667|gb|ACY35992.1| beta-lactamase SHV-1 [Klebsiella pneumoniae]
gi|262477933|gb|ACY68236.1| beta-lactamase blaSHV-1 [Klebsiella pneumoniae]
gi|313766522|gb|ADR80603.1| SHV-1 beta-lactamase [Klebsiella pneumoniae]
gi|313766526|gb|ADR80605.1| SHV-1 beta-lactamase [Klebsiella pneumoniae]
gi|313766532|gb|ADR80608.1| SHV-1 beta-lactamase [Klebsiella pneumoniae]
gi|328535790|gb|EGF62226.1| beta-lactamase [Klebsiella sp. MS 92-3]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|158334967|ref|YP_001516139.1| beta-lactamase [Acaryochloris marina MBIC11017]
gi|158305208|gb|ABW26825.1| beta-lactamase, putative [Acaryochloris marina MBIC11017]
Length = 277
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 7/227 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
S A++ P L+ +TG + + + AS K+ F + L
Sbjct: 20 AWSAAQSELKPAMFFLNPSTGEYL-DINGAKSISAASTIKIPVLLAFFEDVDAGIIDLDE 78
Query: 79 PITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
P+ + + + S G+T + + + +I S N + + L +
Sbjct: 79 PLVMRPDLVASEAGSMQYEPVGTTFSALDTAEYMIAISDNTATNMLIDRL-----GGAEK 133
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
+N K+ GL T N ++ + + +DMA L ++K + + ++
Sbjct: 134 LNQRFKSWGLKHTTIRNPLPDLEGTNTISPQDMAALMLKLKDEDLLSSTSREQALDILRQ 193
Query: 198 KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KTG + +I + Q +A IL
Sbjct: 194 TVTNTLLPQGIEKDADIAHKTGDIGSVVGDIGLIDMPNGQHYVAAIL 240
>gi|84105059|gb|ABC54571.1| beta-lactamase SHV-85 [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATMPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|67464385|pdb|1ZG6|A Chain A, Tem1 Beta Lactamase Mutant S70g
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/274 (14%), Positives = 78/274 (28%), Gaps = 14/274 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMGTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
S N A + ++ ++ F+ +M + L A +
Sbjct: 126 TMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMA 185
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L + + Q+ K + K+G I+A
Sbjct: 186 TTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIA 245
Query: 231 SAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ + I VI + T ++ + + +G
Sbjct: 246 ALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 279
>gi|25989460|gb|AAL79576.1| SHV-38 beta-lactamase [Klebsiella pneumoniae]
gi|195954366|gb|ACG58890.1| extended spectrum beta lactamase SHV-38 [Klebsiella pneumoniae]
gi|257043766|gb|ACV33211.1| beta-lactamase blaSHV-38 [Klebsiella pneumoniae]
gi|257043768|gb|ACV33212.1| beta-lactamase blaSHV-38 [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPVGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|228979140|ref|ZP_04139486.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
gi|228780588|gb|EEM28809.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis Bt407]
Length = 194
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF-------- 210
TTA D A L+ R+ DFP ++ ++ + K N +
Sbjct: 26 TNKQSTTTAIDAAKLAARLVKDFPDVLNITKLTSYQFTFKDSQVFNTNKMIYSLNENIKL 85
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFY 265
G DG++T F+ ++ V++A GD LI+VIL A + N + LL GF
Sbjct: 86 QGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVILDADEENISFIETKKLLQYGFD 140
>gi|146260227|gb|ABQ14439.1| beta-lactamase [uncultured soil bacterium]
gi|146260237|gb|ABQ14443.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/271 (14%), Positives = 76/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L S+N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRTHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAADLLLATIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDRMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|315632435|gb|ADU53763.1| beta-lactamase TEM-1 [Haemophilus parasuis]
gi|315632437|gb|ADU53764.1| beta-lactamase TEM-1 [Haemophilus parasuis]
Length = 167
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 2/140 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 2 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 61
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 62 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 121
Query: 148 SATHFMNAHGVVQHGHYTTA 167
A + A
Sbjct: 122 WEPELNEAIPNDERDTTMPA 141
>gi|17887487|gb|AAL40899.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHFADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLSAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|311747403|ref|ZP_07721188.1| putative D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Algoriphagus sp. PR1]
gi|311302649|gb|EAZ79074.2| putative D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Algoriphagus sp. PR1]
Length = 432
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 14/75 (18%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT--------------LLDTNTGHVIAENYP 47
+ + + + L+ + KL L D ++ V+ E
Sbjct: 6 KILFIFLLFCFSQFSYGQLTRDQYLKLESALGDQSFFSKHLSGFELYDLDSQTVVFERNS 65
Query: 48 DHPWNPASLTKLMTA 62
+ + PAS TKL T
Sbjct: 66 EQRFIPASTTKLFTL 80
>gi|239909271|gb|ACS32294.1| extended spectrum beta-lactamase CTX-M-75 [Providencia stuartii]
Length = 291
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/283 (14%), Positives = 80/283 (28%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP------------YYTLLD-TNTGHVIAENYPDHP 50
V+ +++L + + A + + L++ + ++ D
Sbjct: 11 LTVMATLSLLFSSATLHAQANSVQQQLEALEKSSGGRLGVALINTADNSQILY--RADER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + K +L + I K+ + TMTL
Sbjct: 69 FAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEKHVNGTMTLAELGAA 128
Query: 111 LIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + L +K F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLNTAIPGDPRDTTTPLA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWVVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ GF
Sbjct: 249 IAVIWPENHAPLVLVTYFTQPEQKAESRRDILAAAAKIVTHGF 291
>gi|125658594|gb|ABN49116.1| beta-lactamase SHV-77 [Escherichia coli]
gi|160948449|emb|CAJ47132.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K+ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVALCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|269128704|ref|YP_003302074.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Thermomonospora curvata DSM 43183]
gi|268313662|gb|ACZ00037.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Thermomonospora curvata DSM 43183]
Length = 459
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 19 FLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
++A + ++D T + + D P PAS TKL+T+ S L
Sbjct: 74 LAALASGSGAEISAVVIDARTRRTLFAHRADRPAVPASTTKLVTSVAALSALGPHH 129
>gi|399118|sp|P30896|BLA3_KLEPN RecName: Full=Beta-lactamase SHV-3; Flags: Precursor
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/259 (13%), Positives = 68/259 (26%), Gaps = 15/259 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG +
Sbjct: 181 SMAATLRKLLTSQRLSARSQLQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGASERGARG 240
Query: 228 IVASAIQGDQ--SLIAVIL 244
IVA ++ ++ + L
Sbjct: 241 IVALLGPNNKAERIVVIYL 259
>gi|125658586|gb|ABN49112.1| beta-lactamase SHV-96 [Acinetobacter baumannii]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDARVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|15131526|emb|CAB37325.2| Beta-lactamase [Escherichia coli]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ + + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAMLARVDAGDKQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|288190912|gb|ADC43818.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190914|gb|ADC43819.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190916|gb|ADC43820.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190920|gb|ADC43822.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190922|gb|ADC43823.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190924|gb|ADC43824.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190926|gb|ADC43825.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190928|gb|ADC43826.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190930|gb|ADC43827.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190932|gb|ADC43828.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190934|gb|ADC43829.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190936|gb|ADC43830.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190938|gb|ADC43831.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190940|gb|ADC43832.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190942|gb|ADC43833.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|288190944|gb|ADC43834.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|291603823|gb|ADE20189.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|291603825|gb|ADE20190.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|291603827|gb|ADE20191.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|291603829|gb|ADE20192.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|291603831|gb|ADE20193.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|291603833|gb|ADE20194.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|291603835|gb|ADE20195.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
gi|291603837|gb|ADE20196.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
Length = 212
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 2/140 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 25 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 84
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 85 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 144
Query: 148 SATHFMNAHGVVQHGHYTTA 167
A + A
Sbjct: 145 WEPELNEAIPNDERDTTMPA 164
>gi|160948435|emb|CAJ47127.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR F + I + + + + + +D +G + D
Sbjct: 1 MRYFRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPVGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V +TG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADRTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|160858188|emb|CAI30651.2| beta-lactamase SHV-62 [Klebsiella pneumoniae]
gi|262477945|gb|ACY68242.1| beta-lactamase blaSHV-62 [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKYLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|89475516|gb|ABD73290.1| beta-lactamase CTX-M-59 [Klebsiella pneumoniae]
gi|186920241|gb|ACC95405.1| CTX-M-59 [Klebsiella pneumoniae]
gi|225579650|gb|ACN93994.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579652|gb|ACN93995.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579654|gb|ACN93996.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579656|gb|ACN93997.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579666|gb|ACN94002.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579670|gb|ACN94004.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579672|gb|ACN94005.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579676|gb|ACN94007.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579680|gb|ACN94009.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579682|gb|ACN94010.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579694|gb|ACN94016.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579704|gb|ACN94021.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579718|gb|ACN94028.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
gi|225579736|gb|ACN94037.1| beta-lactamase blaCTX-M-59 [Klebsiella pneumoniae]
Length = 291
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKLLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDILAAAAKIVTHGF 291
>gi|46309226|emb|CAG25836.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 56/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGVEQLDRRIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 93 SEKHLTDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG + R
Sbjct: 213 WFIADKTG------------AGERGARGIVALLGPDGKPER 241
>gi|89069277|ref|ZP_01156640.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Oceanicola granulosus HTCC2516]
gi|89045153|gb|EAR51221.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Oceanicola granulosus HTCC2516]
Length = 516
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D TG +I D PAS+TK MTA
Sbjct: 73 SAAVADIETGELIEGYAADEGLPPASVTKAMTALYALE 110
>gi|300390458|gb|ADK11041.1| extended-spectrum beta-lactamase CTX-M-94 [Escherichia coli]
Length = 291
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/292 (14%), Positives = 82/292 (28%), Gaps = 30/292 (10%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHV 41
MR+ + +++L P + A + L ++ +
Sbjct: 2 MRKSVRRAMLMTTACVSLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQT 61
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M A V + +K +L+ + I + + T
Sbjct: 62 LY--RADERFAMCSTSKVMAAAAVLKQSETQKGLLSQRVEIKPSDLINYNPIAEKHVNGT 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MTL + S N + L +K F + + + + L + A
Sbjct: 120 MTLGELSAAALQYSDNTAMNKLIAHLGGPDKVTAFARTIGDDTFRLDRTEPTLNTAIPGD 179
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T L + Q+ + A G KTG
Sbjct: 180 PRDTTTPLAMAQALRNLTLGNALGDTQRAQLVMWLKGNTTGAASIQAGLPTSWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G+
Sbjct: 240 SGGYGTTNDIAVIWPEGRAPLVLVTYFTQSEPKAESRRDVLAAAARIVTDGY 291
>gi|146260169|gb|ABQ14415.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/271 (14%), Positives = 76/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILKSFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I +N + MT+ I S
Sbjct: 61 TFKVLLCGAVLSRIDAGQEQLGRRIHYPQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|111054507|gb|ABH04327.1| beta-lactamase SHV-92 [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMISTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLAIVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|218091983|emb|CAP58288.1| beta-lactamase [Klebsiella pneumoniae]
gi|223635893|emb|CAQ03504.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVGYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|46309214|emb|CAG25830.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 55/213 (25%), Gaps = 2/213 (0%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 93 SEKHLTDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KTG IVA + V+L
Sbjct: 213 WFIADKTGAGERGARGIVALLGPDGKPERIVVL 245
>gi|197724697|emb|CAP12350.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 65/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVDAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLVDGMTIGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSPRSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPDGKPER 253
>gi|294630624|ref|ZP_06709184.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
gi|292833957|gb|EFF92306.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. e14]
Length = 467
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
P L A ++D TG + E + PAS+TK+ TA S
Sbjct: 90 PLLGDAALGARHSAAVVDAATGRTLYEQDGGQAFTPASVTKIATAVAALSA 140
>gi|124263630|gb|ABM97537.1| beta-lactamase [Klebsiella pneumoniae]
gi|160948443|emb|CAJ47131.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLAALPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ ++ + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVEDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|46452174|gb|AAS98184.1| inhibitor-resistant beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMISTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|226363727|ref|YP_002781509.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus B4]
gi|226242216|dbj|BAH52564.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus opacus
B4]
Length = 461
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
++ + T+ D TG V+ P P PAS TK++TA
Sbjct: 76 IAAAVGPAAANPDLGKFSGTVADAVTGQVLWSVNPQTPMTPASTTKVLTA 125
>gi|157783587|gb|ABV72593.1| beta-lactamase SHV-101 [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + G+ +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDGRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|125658592|gb|ABN49115.1| beta-lactamase SHV-71 [Shigella sp. SHV-71]
gi|160948433|emb|CAJ47126.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKYLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPVGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|94502816|gb|ABF29636.1| beta-lactamase [Klebsiella pneumoniae]
Length = 282
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 60/231 (25%), Gaps = 6/231 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 42 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 101
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 102 SEKHLTDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLERWETA 161
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 162 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPG 221
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVILGAL--DRNTRNKVSAS 258
KTG IVA + ++ + L RN+ A
Sbjct: 222 WFIADKTGAGERGARGIVALLGPDGKPERIVVIYLRDTPASMAERNQHIAR 272
>gi|46309176|emb|CAG25811.1| beta-lactamase [Klebsiella pneumoniae]
gi|46309218|emb|CAG25832.1| beta-lactamase [Klebsiella pneumoniae]
gi|46309220|emb|CAG25833.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 56/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 93 SEKHLTDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG + R
Sbjct: 213 WFIADKTG------------AGERGARGIVALLGPDGKPER 241
>gi|31075043|gb|AAP41944.1| beta-lactamase SHV-51 [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 69/265 (26%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + ++ F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGLAGLTAFLRQIGDNVTRLDRWETELNEALPADARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|28192520|gb|AAN05031.1| LEN-4 beta-lactamase [Klebsiella pneumoniae]
Length = 274
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 56/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 38 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 97
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 98 SEKHLTDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 157
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 158 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPG 217
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG + R
Sbjct: 218 WFIADKTG------------AGERGARGIVALLGPDGKPER 246
>gi|15721853|gb|AAK69829.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V + KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLSAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|179251493|gb|ACB78193.1| beta-lactamase [Klebsiella pneumoniae]
Length = 267
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 56/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 32 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGVEQLDRRIHYRQQDLVDYSPV 91
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 92 SEKHLVDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 151
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 152 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPG 211
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG + R
Sbjct: 212 WFIADKTG------------AGERGARGIVALLGPDGKPER 240
>gi|111021373|ref|YP_704345.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1]
gi|110820903|gb|ABG96187.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus jostii RHA1]
Length = 461
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
++ + T+ D TG V+ P P PAS TK++TA
Sbjct: 76 IAAAVGPAAANPDLGKFSGTVADAVTGQVLWSVNPQTPMTPASTTKVLTA 125
>gi|46309212|emb|CAG25829.1| beta-lactamase [Klebsiella pneumoniae]
gi|46309228|emb|CAG25837.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 56/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGVEQLDRRIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 93 SEKHLVDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG + R
Sbjct: 213 WFIADKTG------------AGERGARGIVALLGPDGKPER 241
>gi|325518504|gb|EGC98195.1| D-alanyl-D-alanine endopeptidase [Burkholderia sp. TJI49]
Length = 157
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+L++ + +LD ++G + AS++KLMT
Sbjct: 108 LLASCGYNPRAVRSLHSRAAYVLDVDSGTPLLARNSRTVRPIASISKLMT 157
>gi|46309182|emb|CAG25814.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 55/213 (25%), Gaps = 2/213 (0%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 93 SEKHLVDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KTG IVA + V+L
Sbjct: 213 WFIADKTGAGERGARGIVALLGPDGKPERIVVL 245
>gi|293628083|gb|ADE58494.1| extended-spectrum beta-lactamase SHV-128 [Enterobacter cloacae]
Length = 286
Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELRA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|186682820|ref|YP_001866016.1| beta-lactamase [Nostoc punctiforme PCC 73102]
gi|186465272|gb|ACC81073.1| beta-lactamase [Nostoc punctiforme PCC 73102]
Length = 340
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 7/146 (4%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
P +D TG D ++ AS K +F + K L + + +
Sbjct: 96 PGIFFMDLKTGD-YFSFNGDKAFSAASTIKYPILIALFQEIDAGKIKLGEALVMRRKHVT 154
Query: 89 -YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ G+ ++L ++ S N I + L V +N + GL
Sbjct: 155 GGSGDLQYQRVGTKLSLLQTATKMMTISDNTATNMIIDRL-----GGVSKLNQKFRRWGL 209
Query: 148 SATHFMNAHGVVQHGHYTTARDMAIL 173
+T N G + + T+A+D+ L
Sbjct: 210 QSTVIHNMLGDFKGTNKTSAKDLVRL 235
>gi|302530794|ref|ZP_07283136.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces sp. AA4]
gi|302439689|gb|EFL11505.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces sp. AA4]
Length = 545
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT---AYVVFSFL 69
++ + A +++D +G V+ ++ + P PAS TK++T A +
Sbjct: 154 VAAKLSGPAGAAALSQLSGSVIDPASGTVLWDHASNTPLTPASTTKILTVSAALLAMEPT 213
Query: 70 K 70
K
Sbjct: 214 K 214
>gi|291621299|dbj|BAI94487.1| beta-lactamase SHV-133 [Klebsiella pneumoniae]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDGVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|160948441|emb|CAJ47130.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPHNKAER 253
>gi|197724701|emb|CAP12352.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 56/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 45 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 105 SEKHLVDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 165 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG + R
Sbjct: 225 WFIADKTG------------AGERGARGIVALLGPDGKPER 253
>gi|46309186|emb|CAG25816.1| beta-lactamase [Klebsiella pneumoniae]
gi|46309222|emb|CAG25834.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 56/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 93 SEKHLVDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG + R
Sbjct: 213 WFIADKTG------------AGERGARGIVALLGPDGKPER 241
>gi|28192518|gb|AAN05030.1| LEN-3 beta-lactamase [Klebsiella pneumoniae]
Length = 274
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 56/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 38 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 97
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 98 SEKHLVDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 157
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 158 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPG 217
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG + R
Sbjct: 218 WFIADKTG------------AGERGARGIVALLGPDGKPER 246
>gi|312131162|ref|YP_003998502.1| peptidase s13 d-ala-d-ala carboxypeptidase c [Leadbetterella
byssophila DSM 17132]
gi|311907708|gb|ADQ18149.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Leadbetterella
byssophila DSM 17132]
Length = 404
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ + + +G V+ P+ PAS TK+++ Y L
Sbjct: 27 PKHAFSGVLIKEGKSGKVLFAKNAHKPFVPASNTKILSMYAALEMLP 73
>gi|77021908|gb|ABA60809.1| SHV-type extended spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITVSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|332559029|ref|ZP_08413351.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacter sphaeroides WS8N]
gi|332276741|gb|EGJ22056.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacter sphaeroides WS8N]
Length = 485
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++ A Y + D +G V+ PAS K +TA
Sbjct: 46 LVARAALGGAVAYVVADARSGTVLEAANAALRLPPASTAKTVTALYGLE 94
>gi|221640022|ref|YP_002526284.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacter sphaeroides KD131]
gi|221160803|gb|ACM01783.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
precursor [Rhodobacter sphaeroides KD131]
Length = 507
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++ A Y + D +G V+ PAS K +TA
Sbjct: 68 LVARAALGGAVAYVVADARSGTVLEAANAALRLPPASTAKTVTALYGLE 116
>gi|126462996|ref|YP_001044110.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacter sphaeroides ATCC 17029]
gi|126104660|gb|ABN77338.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacter sphaeroides ATCC 17029]
Length = 485
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++ A Y + D +G V+ PAS K +TA
Sbjct: 46 LVARAALGGAVAYVVADARSGTVLEAANAALRLPPASTAKTVTALYGLE 94
>gi|320010031|gb|ADW04881.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces flavogriseus ATCC 33331]
Length = 493
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A ++ + + P L + ++D TG + P PAS K+ T V S
Sbjct: 113 ASSLRTALDPLLDKPALGSVRTAVVIDAATGKQLFARGAATPMTPASTVKIATTVAVLSA 172
>gi|41584428|gb|AAS09879.1| SHV-5 extended spectrum beta-lactamase [Escherichia coli]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V K G
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKNG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|41584430|gb|AAS09880.1| SHV-5 extended spectrum beta-lactamase [Escherichia coli]
Length = 285
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V K G
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKNG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|41584438|gb|AAS09884.1| SHV-5 extended spectrum beta-lactamase [Escherichia coli]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V K G
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKNG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|322806097|emb|CBZ03664.1| D-alanyl-D-alanine carboxypeptidase [Clostridium botulinum H04402
065]
Length = 137
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 239 LIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYII----KDFYQQNLSNEVPNISE 294
++AVI+GA RNK ++ L++ GF + + + + E
Sbjct: 1 MLAVIMGAPTYKIRNKDASKLMNYGFSKFECKTLVKKGDVISKVPLNSKGDKYFMAKSCE 60
Query: 295 EVCTTQKEIINYNTQMK------EAKDKESHFIDFEKITLLKNKITK 335
E+ ++ K + + K + + + N I K
Sbjct: 61 ELDAIIEKGKKPKITNKCIIDENKKEYKINEEVGICEFYSDGNLIGK 107
>gi|146260182|gb|ABQ14421.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMVS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLRGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|32442315|gb|AAP82228.1| beta-lactamase SHV-44 [Klebsiella pneumoniae]
gi|32815775|gb|AAP88261.1| SHV beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQLQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|18958446|gb|AAL82593.1|AF467948_1 beta-lactamase SHV-37 [Klebsiella pneumoniae]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLAALPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITVSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|8052554|gb|AAF37209.2|AF208796_1 beta-lactamase [Klebsiella pneumoniae]
gi|262477937|gb|ACY68238.1| beta-lactamase blaSHV-25 [Klebsiella pneumoniae]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLAALPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITVSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|41584432|gb|AAS09881.1| SHV-5 extended spectrum beta-lactamase [Escherichia coli]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V K G
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKNG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|219958082|gb|ACL68095.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/276 (13%), Positives = 70/276 (25%), Gaps = 17/276 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + + + + + + Y +D +G +A
Sbjct: 1 MRYIRLCLFSLIAALPLAVFASPPPLEQITRSESQLAGRVGYVEMDLASGRTLAAWRASE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPLMSTFKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
L + + Q+ + + AV KTG
Sbjct: 181 SMATTLRKLLTSHTLSARSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRG 240
Query: 228 IVASAIQGDQ--SLIAVILGAL--DRNTRNKVSASL 259
IVA + ++ + L RN+ A +
Sbjct: 241 IVALLGPNGKAERIVVIYLRDTPATIAERNQQIARI 276
>gi|304310146|ref|YP_003809744.1| beta-lactamase class D (Penicillin-binding protein) (OXA-9) [gamma
proteobacterium HdN1]
gi|301795879|emb|CBL44080.1| beta-lactamase class D (Penicillin-binding protein) (OXA-9) [gamma
proteobacterium HdN1]
Length = 276
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/241 (12%), Positives = 66/241 (27%), Gaps = 12/241 (4%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKL--PYYTLLDTNTGHVIAENYPD--HPWNPASLTKLMT 61
+ + ++S +F ++A ++D TG + D +P S K+
Sbjct: 8 LAFLLVVISVLFSANAVASEQAALLKCTLVVDAATGSTLY-RNGDCTRRASPCSSFKIPL 66
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
A + F T + D+ + +
Sbjct: 67 AIMGFESGILHSPESPTWELKPEYNPSKRDQMYPKVNPVLWERDSVVWFSQHLTTRLGEA 126
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDF 181
A ++ + K + ++ KN GL+ + M++ + I +
Sbjct: 127 AFSDYIKKFQYGNQDGSGDSGKNNGLTRSWLMSSLAISPEEQVQFLHRFIARQLPISRNT 186
Query: 182 PQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN--IVASAIQGDQSL 239
+ + + G + G + G S V A + + +
Sbjct: 187 YEMVRATIPQYQAKDGWVVH-----GKSGSGWLLDRDGKEDESRPQGWFVGWAEKAGRQV 241
Query: 240 I 240
I
Sbjct: 242 I 242
>gi|300934616|ref|ZP_07149872.1| putative penicillin-binding protein 4 [Corynebacterium resistens
DSM 45100]
Length = 470
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ + + D TG ++ P P PAS TK++TA
Sbjct: 92 SAVAKAAKDPALGKLSAAVTDVRTGKILWSADPKRPLVPASSTKVLTAAAA 142
>gi|116071062|ref|ZP_01468331.1| possible beta-lactamase family protein [Synechococcus sp. BL107]
gi|116066467|gb|EAU72224.1| possible beta-lactamase family protein [Synechococcus sp. BL107]
Length = 358
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/259 (10%), Positives = 64/259 (24%), Gaps = 27/259 (10%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ ++ Y L+ + G A+ P AS K V + +
Sbjct: 89 QAATQPDLQVSAYMLI-LDDGRF-AQMNAHRPMPAASSIKTPILLAVLERIDQGTLQWNE 146
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
P+T++K + + + +++ +++ A + + +
Sbjct: 147 PLTLTKELVGGGAGWMASRPLGSRFPTYEVATEMIRVSDNSATNLMIARAGGQDAINARF 206
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-GLEIKG 197
+ + + T + D + + E+
Sbjct: 207 QALDL------PSTVVNNWLPDLDGTNTTSARDLSRAIALVDSGESLGPRSRDLFREVMA 260
Query: 198 KKYPNTNWAVGTFLGADG-----------------MKTGFTCASGFNIVASAIQGDQSLI 240
NT G G G KTG + + + + +
Sbjct: 261 TSVTNTLLPTGLMRGLGGAQGAPDSALARKGYRVFNKTGDIGTAYADAGLIELPDGRRAV 320
Query: 241 AVIL-GALDRNTRNKVSAS 258
A L + R+
Sbjct: 321 AGFLVKGPFNDPRSTEMIR 339
>gi|32470126|ref|NP_863495.1| beta-lactamase CTX-M-16 [Klebsiella pneumoniae]
gi|21039160|gb|AAM33515.1|AF454633_1 extended spectrum beta-lactamase [Klebsiella pneumoniae]
gi|16506520|gb|AAK71471.1| beta-lactamase CTX-M-17 [Klebsiella pneumoniae]
Length = 291
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAKGL 291
>gi|146260101|gb|ABQ14396.1| beta-lactamase [uncultured soil bacterium]
Length = 271
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFRVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHPTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|146260232|gb|ABQ14441.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 39/271 (14%), Positives = 77/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 AFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|237786217|ref|YP_002906922.1| putative penicillin-binding protein 4 [Corynebacterium
kroppenstedtii DSM 44385]
gi|237759129|gb|ACR18379.1| putative penicillin-binding protein 4 [Corynebacterium
kroppenstedtii DSM 44385]
Length = 557
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D +TG + E PAS TK+MT
Sbjct: 140 VTDASTGKTLWEKNSSTAMVPASSTKMMTTAAAL 173
>gi|160948439|emb|CAJ47129.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLTVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|48525538|gb|AAT45018.1| beta-lactamase KLUY-4 [Kluyvera sp. N03-0462]
Length = 291
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 73/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPDHP 50
F + +L + P + + L+D + V+ D
Sbjct: 11 FAAAACIPLLLSSAPLYAQTSAVQQKLATLEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIRPTDLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|161367444|gb|ABX71158.1| extended-spectrum beta-lactamase SHV-104 [Klebsiella pneumoniae]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSASSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|74422857|gb|ABA06589.1| mutant extended-spectrum beta-lactamase SHV-67 [Klebsiella
pneumoniae]
Length = 286
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWCADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|46244156|gb|AAP93842.1| beta-lactamase [Citrobacter freundii]
Length = 234
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 2/216 (0%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 19 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 78
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 79 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 138
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 139 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 198
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K+G I+A+ + V+
Sbjct: 199 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVV 234
>gi|46244162|gb|AAP93845.1| beta-lactamase [Escherichia coli]
Length = 242
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 2/216 (0%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 27 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 86
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 87 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 146
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 147 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 206
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K+G I+A+ + V+
Sbjct: 207 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVV 242
>gi|46244152|gb|AAP93840.1| beta-lactamase [Klebsiella pneumoniae]
Length = 241
Score = 50.7 bits (119), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/216 (14%), Positives = 62/216 (28%), Gaps = 2/216 (0%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 26 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 85
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 86 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 145
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + L + + Q+ K +
Sbjct: 146 WEPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 205
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
K+G I+A+ + V+
Sbjct: 206 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVV 241
>gi|120554008|ref|YP_958359.1| Beta-lactamase [Marinobacter aquaeolei VT8]
gi|120323857|gb|ABM18172.1| Beta-lactamase [Marinobacter aquaeolei VT8]
Length = 301
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/267 (14%), Positives = 80/267 (29%), Gaps = 15/267 (5%)
Query: 3 QFLVIIAMAMLSNIFPF----------LSIAETNKLP-YYTLLDTNTGHVIAENYPDHPW 51
+ + I + + +++ +A+ + + D +G E + D +
Sbjct: 5 KLIAAILLTLSTSVASADQDNSLIKTVKKVADDLEARVGFAAYDLESGQR-WEYHADQRF 63
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKL 110
+S K + + + +A L + +S+ + Y P T+ G MTL + +
Sbjct: 64 AMSSTFKTLACAALLHRVDTGQANLARKVNVSESDLVTYSPITETYADGEAMTLSDLCEA 123
Query: 111 LIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A + + F +H+ + L T A T
Sbjct: 124 TLTTSDNTAANLVLRELGGPEAVTSFARHLGDDVTRLDRWETELNEALPGDNRDTTTPNA 183
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L + D Q++ + A +TG +I
Sbjct: 184 MVRNLQTLLLGDALSEPSREQLRDWLEGNQVADGLFRAAVPEGWVVADRTGAGGFGSRSI 243
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKV 255
A ++ I V L +
Sbjct: 244 TAVIWPPERQPIVVALYLTQTDASFAE 270
>gi|117620476|ref|YP_857133.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|60679103|gb|AAX33841.1| penicillin-binding protein [Aeromonas veronii bv. sobria]
gi|117561883|gb|ABK38831.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 478
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
M++ L+ Y ++ N G V + D PAS K++
Sbjct: 1 MQRLLIGFCALFSLAAQAAPLTPPQ-GGQYAIIVQGNNG-VEFARHADQMIAPASTMKVL 58
Query: 61 TAYVV 65
TA
Sbjct: 59 TALAA 63
>gi|227494491|ref|ZP_03924807.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[Actinomyces coleocanis DSM 15436]
gi|226832225|gb|EEH64608.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[Actinomyces coleocanis DSM 15436]
Length = 451
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++D TG+V+ P PAS TK+ A+V L
Sbjct: 92 GAYVIDAVTGNVVFAQNEMKPVVPASTTKVFAAFVALDALDP 133
>gi|6165409|emb|CAB59824.1| beta-lactamase class A [Kluyvera ascorbata]
gi|18129349|emb|CAD20585.1| beta-lactamase class A [Kluyvera ascorbata]
gi|18129351|emb|CAD20586.1| beta-lactamase class A [Kluyvera ascorbata]
gi|18129365|emb|CAD20593.1| beta-lactamase class A [Kluyvera ascorbata]
Length = 291
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAIIWPENHAPLVLVTYFTQPEQKAESRRDVLAAAAKIVTHGF 291
>gi|323483091|ref|ZP_08088484.1| hypothetical protein HMPREF9474_00233 [Clostridium symbiosum
WAL-14163]
gi|323403631|gb|EGA95936.1| hypothetical protein HMPREF9474_00233 [Clostridium symbiosum
WAL-14163]
Length = 262
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/243 (15%), Positives = 76/243 (31%), Gaps = 15/243 (6%)
Query: 26 NKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ ++ D TG E D + ASL K+ +F KE + L I + K
Sbjct: 17 IEGKKAIVIEDLKTGEA-VEINRDEVFPAASLIKVPVLSALFRMAKESQIALDERIELEK 75
Query: 85 NASE-YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ G ++ + L+I S N A + + + + +N+ +
Sbjct: 76 DSRIGGFGILKDLGDGLNPSVRDLAVLMITLSDNIAANLLIDRI------GMSQINSELQ 129
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G+ T Q + + + + ++ N
Sbjct: 130 AMGMKHTVLQRKMMDSQAKERGLDNYTSAGDMQKLMKAILESSFRGDILDILFRQQCNNK 189
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-----NKVSAS 258
A+ KTG + D+ +IA++L + R N+
Sbjct: 190 LPALMEGDVRFAHKTGDLPGVEHD-AGIICTDDREIIAIVLTDELADNREGIWLNQEIGK 248
Query: 259 LLS 261
L++
Sbjct: 249 LIN 251
>gi|288921150|ref|ZP_06415438.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Frankia sp. EUN1f]
gi|288347459|gb|EFC81748.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Frankia sp. EUN1f]
Length = 492
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
A ++ P ++D TG V+ P PAS K+
Sbjct: 62 AAVTARLTGPLADPVLGNPAALVVDALTGQVLFAQRSTEPTAPASTIKI 110
>gi|315632439|gb|ADU53765.1| extended-spectrum beta-lactamase TEM-116 [Haemophilus parasuis]
gi|315632441|gb|ADU53766.1| extended-spectrum beta-lactamase TEM-116 [Haemophilus parasuis]
Length = 167
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 2/140 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 2 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 61
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 62 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 121
Query: 148 SATHFMNAHGVVQHGHYTTA 167
A +
Sbjct: 122 WEPELNEAIPNDERDTTMPV 141
>gi|46244160|gb|AAP93844.1| beta-lactamase [Hafnia alvei]
Length = 232
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 2/140 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 21 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 80
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 81 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 140
Query: 148 SATHFMNAHGVVQHGHYTTA 167
A +
Sbjct: 141 WEPELNEAIPNDERDTTMPV 160
>gi|46244158|gb|AAP93843.1| beta-lactamase [Klebsiella oxytoca]
Length = 229
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 2/140 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 21 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 80
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 81 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 140
Query: 148 SATHFMNAHGVVQHGHYTTA 167
A +
Sbjct: 141 WEPELNEAIPNDERDTTMPV 160
>gi|46244154|gb|AAP93841.1| beta-lactamase [Serratia marcescens]
Length = 212
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 45/140 (32%), Gaps = 2/140 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 17 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVE 76
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 77 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 136
Query: 148 SATHFMNAHGVVQHGHYTTA 167
A +
Sbjct: 137 WEPELNEAIPNDERDTTMPV 156
>gi|195927602|pdb|3DTM|A Chain A, Increased Folding Stability Of Tem-1 Beta-Lactamase By In-
Vitro Selection
Length = 263
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 64/228 (28%), Gaps = 3/228 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ + + S K++ + S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRSEERFPMMSTFKVLLCGAILSRIDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGL 147
+ MT+ I S N A K F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKGLTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + T L + + Q+ K +V
Sbjct: 140 WEPELNEAIPNDERDTTTPVAMATTLRKLLTGELLTPASRQQLMDWMEADKVAGPLLRSV 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNK 254
K+G IVA+ + I VI + T ++
Sbjct: 200 LPAGWFIADKSGAGERGSRGIVAALGPDGKPSRIVVIYTTGSQATMDE 247
>gi|238019629|ref|ZP_04600055.1| hypothetical protein VEIDISOL_01503 [Veillonella dispar ATCC 17748]
gi|237863670|gb|EEP64960.1| hypothetical protein VEIDISOL_01503 [Veillonella dispar ATCC 17748]
Length = 272
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 15/234 (6%)
Query: 30 YYTLLDTNTGH---VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
Y +L + +IA D + ASL K++ VF + ++ L + +S+
Sbjct: 28 SYVVLQFDDEEEPIIIASKGEDTVHSSASLIKVLIMEYVFHLARTEQLDLNDTVPLSRTP 87
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
L L++ +++IA + ++ ++++N ++ LG
Sbjct: 88 RVEGGGALQELVAKHSFTYLELCRLMMVLSDNIATNLLITVL-----GMENINARAEQLG 142
Query: 147 LSATHFMNAHGVVQ-----HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ + + TA +A L + Y + + +++
Sbjct: 143 VDEIELNRMMMDFEALAEGRDNRMTAMALARLYKH-IFECRDRDFYGREMWNILGRQQFR 201
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+ KTG + ++L + N R K
Sbjct: 202 DILPFYWGEDVRFHHKTGSLDRVEHDGGILETFRGH-FCFILLMSDIDNDRGKE 254
>gi|67462183|gb|AAV28215.2| beta-lactamase CTX-M-40 [Escherichia coli]
Length = 290
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/283 (14%), Positives = 78/283 (27%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
+ +++L P + A + L +D + + D
Sbjct: 10 LMTTACISLLLGSAPLYAQANDVQQKLAALEKSSGGRLGVALIDTADNAQTLY--RADER 67
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L+ + I + + TMTL
Sbjct: 68 FAMCSTSKVMAAAAVLKQSETQKNVLSQKVEIKSSDLINYNPIAEKHVNGTMTLAELSAA 127
Query: 111 LIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + L +K F + + + + L + A T
Sbjct: 128 ALQYSDNTAMNKLIAHLGGPDKVTAFARAIGDDTFRLDRTEPTLNTAIPGDPRDTTTPLA 187
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 188 MAQTLRHLTLGSALGETQRAQLVTWLKGNTTGAASIQAGLPTSWVVGDKTGSGDYGTTND 247
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + LI V A R +A +++ G+
Sbjct: 248 IAVIWPEGRAPLILVTYFTQPEQKAESRRDVLAAAAKIVTDGY 290
>gi|289807457|ref|ZP_06538086.1| D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 92
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
ND VA+A+ + + +FV MN+ K L L THF HG+ G +++A D+A+LS
Sbjct: 2 NDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQHSSAYDLAVLSRA 61
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
I P++ H + K L G N N
Sbjct: 62 IIHGEPEFYHMYSEKSLTWNGITQQNRN 89
>gi|16304824|emb|CAC95175.1| CTX-M-20 beta-lactamase [Proteus mirabilis]
Length = 291
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDFLAAAAKIVTHGF 291
>gi|162329895|pdb|2J9O|A Chain A, Structure Of Pbp-A, L158e Mutant
gi|162329896|pdb|2J9O|B Chain B, Structure Of Pbp-A, L158e Mutant
gi|162329897|pdb|2J9O|C Chain C, Structure Of Pbp-A, L158e Mutant
gi|162329898|pdb|2J9O|D Chain D, Structure Of Pbp-A, L158e Mutant
gi|167013198|pdb|2JBF|A Chain A, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
Penicillin-G.
gi|167013199|pdb|2JBF|B Chain B, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
Penicillin-G.
gi|167013200|pdb|2JBF|C Chain C, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
Penicillin-G.
gi|167013201|pdb|2JBF|D Chain D, Structure Of Pbp-A, L158e Mutant. Acyl-Enzyme Complex With
Penicillin-G
Length = 298
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 15/258 (5%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+S Y + ++G + D + AS K F + E + L
Sbjct: 27 LVSRQPNLTAGLYF-FNLDSGASL-NVGGDQVFPAASTIKFPILVAFFKAVDEGRVTLQE 84
Query: 79 PITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+T+ + + + K S +L+I S N I + L
Sbjct: 85 RLTMRPDLIAPEAGTLQYQKPNSQYAALEVAELMITISDNTATNMIIDRL-----GGAAE 139
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
+N + GL T N ++ + T+ RD+A L + + L+I
Sbjct: 140 LNQQFQEWGLENTVINNPEPDMKGTNTTSPRDLATLML-KIGQGEILSPRSRDRLLDIMR 198
Query: 198 KKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL-----GALDRNT 251
+ NT G GA KTG + + Q +A ++ +
Sbjct: 199 RTVTNTLLPAGLGKGATIAHKTGDIGIVVGDAGMVDMPNGQRYVAAMMVKRPYNDPRGSE 258
Query: 252 RNKVSASLLSMGFYNKTD 269
+ + ++ F +
Sbjct: 259 LIRQVSRMVYQAFEKLSP 276
>gi|81300412|ref|YP_400620.1| beta-lactamase [Synechococcus elongatus PCC 7942]
gi|81169293|gb|ABB57633.1| beta-lactamase [Synechococcus elongatus PCC 7942]
Length = 375
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/233 (11%), Positives = 73/233 (31%), Gaps = 6/233 (2%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ + + + K L D +TG+ + AS K+ + +++
Sbjct: 110 LQTQLAALIQQQPALKAE-LFLTDLDTGN-YVDINGTTSIPAASTIKIPVLAALMEAVQQ 167
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
K L +T++++ ++ + + +++ +++ A + +
Sbjct: 168 GKVRLDEQLTMTQDLVASEAGAMQYQPVGSKFTVLETAIEMIRISDNTATNLLIARLGGI 227
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ N GL T N ++ + TT ++M L +++
Sbjct: 228 EAV----NQRFAAWGLQTTRIRNLLPDLEGTNSTTPKEMVELLAKVENGSLLDPRSRDRF 283
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
++ + KTG ++ + + IA +L
Sbjct: 284 FAVLRTTETNTLLSRGLGEEATIAHKTGDIAMVVGDVGLIDMPSGKRYIAAML 336
>gi|56750069|ref|YP_170770.1| beta-lactamase [Synechococcus elongatus PCC 6301]
gi|56685028|dbj|BAD78250.1| beta-lactamase [Synechococcus elongatus PCC 6301]
Length = 317
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/233 (11%), Positives = 73/233 (31%), Gaps = 6/233 (2%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ + + + K L D +TG+ + AS K+ + +++
Sbjct: 52 LQTQLAALIQQQPALKAE-LFLTDLDTGN-YVDINGTTSIPAASTIKIPVLAALMEAVQQ 109
Query: 72 KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE 131
K L +T++++ ++ + + +++ +++ A + +
Sbjct: 110 GKVRLDEQLTMTQDLVASEAGAMQYQPVGSKFTVLETAIEMIRISDNTATNLLIARLGGI 169
Query: 132 KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
+ N GL T N ++ + TT ++M L +++
Sbjct: 170 EAV----NQRFAAWGLQTTRIRNLLPDLEGTNSTTPKEMVELLAKVENGSLLDPRSRDRF 225
Query: 192 GLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
++ + KTG ++ + + IA +L
Sbjct: 226 FAVLRTTETNTLLSRGLGEEATIAHKTGDIAMVVGDVGLIDMPSGKRYIAAML 278
>gi|13786975|pdb|1HTZ|A Chain A, Crystal Structure Of Tem52 Beta-Lactamase
gi|13786976|pdb|1HTZ|B Chain B, Crystal Structure Of Tem52 Beta-Lactamase
gi|13786977|pdb|1HTZ|C Chain C, Crystal Structure Of Tem52 Beta-Lactamase
gi|13786978|pdb|1HTZ|D Chain D, Crystal Structure Of Tem52 Beta-Lactamase
gi|13786979|pdb|1HTZ|E Chain E, Crystal Structure Of Tem52 Beta-Lactamase
gi|13786980|pdb|1HTZ|F Chain F, Crystal Structure Of Tem52 Beta-Lactamase
Length = 263
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 74/237 (31%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVK 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + T A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTTPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G + I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGASERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|256862200|gb|ACV32635.1| beta-lactamase Shv125 [Klebsiella pneumoniae]
Length = 271
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLNIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|29169569|gb|AAO66446.1| extended-spectrum beta-lactamase [Escherichia coli]
Length = 286
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETERNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|260178852|gb|ACX34099.1| extended spectrum beta-lactamase CTX-M-91 [Proteus mirabilis]
Length = 291
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/292 (13%), Positives = 80/292 (27%), Gaps = 30/292 (10%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHV 41
MR+ + +++L P + A + L ++ +
Sbjct: 2 MRKSVRRAMLMTTACVSLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQT 61
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M V + +K +L+ + I + + T
Sbjct: 62 LY--RADERFAMCSTSKVMAVAAVLKQSETQKGLLSQRVEIKPSDLINYNPIAEKHVNGT 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MT + S N + L +K F + + + + L + A
Sbjct: 120 MTFGELSAAALQYSDNTAMNKLIAHLGGPDKVTAFARTIGDDTFRLDRTEPTLNTAIPGD 179
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T L + Q+ + A G KTG
Sbjct: 180 PRDTTTPLAMAQSLRNLTLGNALGDTQRAQLVMWLKGNTTGAASIQAGLPTSWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G+
Sbjct: 240 SGDYGTTNDIAVIWPEGRAPLVLVTYFTQSEPKAESRRDVLAAAARIVTDGY 291
>gi|17980762|gb|AAL50725.1|AF452105_1 LEN-type beta-lactamase variant [Klebsiella pneumoniae]
Length = 279
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MR--QFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTL-LDTNTGHVIAENYPDH 49
MR + VI +A L + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLVVYAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLVDGMTIGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSPRSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPDGKPER 253
>gi|125658588|gb|ABN49113.1| beta-lactamase SHV-95 [Citrobacter freundii]
Length = 286
Score = 50.4 bits (118), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARLQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|265260945|gb|ACY74743.1| extended spectrum beta-lactamase CTX-M-92 [Escherichia coli]
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRTQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDILAAAAKIVTHGF 291
>gi|112785126|gb|ABI20753.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 71/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMT
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTQAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|18129357|emb|CAD20589.1| beta-lactamase class A [Kluyvera ascorbata]
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A +Q L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAIIWPENQTPLVLVTYFTQPEQKAESRRDVLAAAAKIVTHGF 291
>gi|208503063|gb|ACI29347.1| extended spectrum CTX-M-85 beta-lactamase [Salmonella enterica
subsp. enterica serovar Albany]
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 71/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMT
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTPAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|81238145|gb|ABB59946.1| extended-spectrum beta-lactamase CTX-M-82 [Escherichia coli]
gi|291061255|gb|ADD73421.1| extended-spectrum beta-lactamase CTX-M-82 [Escherichia coli]
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFPMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|238801080|gb|ACR56321.1| extended spectrum beta-lactamase CTX-M-89 [Proteus mirabilis]
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/292 (13%), Positives = 80/292 (27%), Gaps = 30/292 (10%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHV 41
MR+ + +++L P + A + L ++ +
Sbjct: 2 MRKSVRRAMLMTTACVSLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQT 61
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M V + +K +L+ + I + + T
Sbjct: 62 LY--RADERFAMCSTSKVMAVAAVLKQSETQKGLLSQRVEIKPSDLINYNPIAEKHVNGT 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MT + S N + L +K F + + + + L + A
Sbjct: 120 MTFGELSAAALQYSDNTAMNKLIAHLGGPDKVTAFARTIGDDTFRLDRTEPTLNTAIPGD 179
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T L + Q+ + A G KTG
Sbjct: 180 PRDTTTPLAMAQALRNLTLGNALGDTQRAQLVMWLKGNTTGAASIQAGLPTSWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G+
Sbjct: 240 SGDYGTTNDIAVIWPEGRAPLVLVTYFTQSEPKAESRRDVLAAAARIVTDGY 291
>gi|294140853|ref|YP_003556831.1| penicillin-binding protein 4 [Shewanella violacea DSS12]
gi|293327322|dbj|BAJ02053.1| penicillin-binding protein 4 [Shewanella violacea DSS12]
Length = 486
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M+ + + ++ F SI + + TG +I E PD
Sbjct: 1 MKPLVNACLLLSFLSLPALGDANFNHLFSSIKPPHSHTAIIATNLVTGDIIFEQNPDTLL 60
Query: 52 NPASLTKLMTAYVV 65
PAS KL+TA
Sbjct: 61 LPASTMKLLTAVAA 74
>gi|71609065|emb|CAG25812.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 73/269 (27%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + + Y +D +G +A + + S
Sbjct: 8 LISLIAALPLAVFASPPPLEQITRSESQLAGRVGYVEMDLVSGRTLAAWRANERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG IVA
Sbjct: 188 KLLTSHTLSARSQQQLLQWMVDDQVAGPLIRAVLPAGWFIAEKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILGAL--DRNTRNKVSASL 259
+ ++ + L RN+ A +
Sbjct: 248 NGKAERIVVIYLRDTPASMAERNQQIARI 276
>gi|226304107|ref|YP_002764065.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis PR4]
gi|226183222|dbj|BAH31326.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus
erythropolis PR4]
Length = 441
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + D TG+++ P P PAS TK++TA
Sbjct: 56 IAAAIGPAVANPDLGKFTGVVADALTGNILWSADPSTPMTPASTTKVLTASAAL 109
>gi|94502804|gb|ABF29629.1| beta-lactamase [Klebsiella pneumoniae]
Length = 272
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 67/258 (25%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ ++A L+ + + + +D +G + D + S
Sbjct: 6 IISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMST 65
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 66 FKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 125
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + F++ + + L T A T A A L
Sbjct: 126 NSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLR 185
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + +V KTG A +
Sbjct: 186 KLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------------ASK 233
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG ++ R
Sbjct: 234 RGARGIVALLGPNNKAER 251
>gi|94502834|gb|ABF29646.1| beta-lactamase [Klebsiella pneumoniae]
gi|94502901|gb|ABF29683.1| beta-lactamase [Enterobacter cloacae]
Length = 265
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 67/258 (25%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ ++A L+ + + + +D +G + D + S
Sbjct: 2 IISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMST 61
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 62 FKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 121
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + F++ + + L T A T A A L
Sbjct: 122 NSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLR 181
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + +V KTG A +
Sbjct: 182 KLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------------ASK 229
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG ++ R
Sbjct: 230 RGARGIVALLGPNNKAER 247
>gi|90403949|gb|ABD93868.1| SHV-12 extended-spectrum beta-lactamase [Escherichia coli]
Length = 277
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 67/258 (25%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ ++A L+ + + + +D +G + D + S
Sbjct: 6 IISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMST 65
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 66 FKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 125
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + F++ + + L T A T A A L
Sbjct: 126 NSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLR 185
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + +V KTG A +
Sbjct: 186 KLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------------ASK 233
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG ++ R
Sbjct: 234 RGARGIVALLGPNNKAER 251
>gi|303297117|gb|ADM08178.1| beta-lactamase CTX-M-97 [Escherichia coli]
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDILAAAAKIVTHGF 291
>gi|32187779|emb|CAD99181.1| beta-lactamase CTX-M-31 [Providencia sp. 4440]
gi|32187781|emb|CAD99182.1| beta-lactamase CTX-M-31 [Escherichia coli]
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + S L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDESFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDILAAAAKIVTHGF 291
>gi|145298675|ref|YP_001141516.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-
alanine-endopeptidase [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142851447|gb|ABO89768.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-
alanine-endopeptidase [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 481
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M++ L+ + + + A Y ++ G + D PAS
Sbjct: 1 MQRLLIGFCALFSTLVPTLVQAATLTPPKGGQYAIIV-QGNGGIEFARNADDMIAPASTM 59
Query: 58 KLMTAYVV 65
K++TA
Sbjct: 60 KVLTALAA 67
>gi|18958444|gb|AAL82592.1|AF467947_1 beta-lactamase SHV-36 [Klebsiella pneumoniae]
gi|50513039|gb|AAT77772.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYVRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|6979154|gb|AAF34336.1| beta-lactamase SHV-5 variant [Klebsiella pneumoniae]
Length = 260
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 35 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 94
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 95 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDKVTRLDRWETE 154
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 155 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 214
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 215 WFIADKTG------------ASKRGARGIVALLGPNNKAER 243
>gi|206577539|ref|YP_002238610.1| beta-lactamase [Klebsiella pneumoniae 342]
gi|206580492|ref|YP_002238630.1| beta-lactamase [Klebsiella pneumoniae 342]
gi|206566597|gb|ACI08373.1| beta-lactamase [Klebsiella pneumoniae 342]
gi|206569550|gb|ACI11326.1| beta-lactamase [Klebsiella pneumoniae 342]
Length = 286
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 56/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 45 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 105 SEKHLVDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 165 LNEALPGDARDTTTPASMAATLRKLLTAQHLSPRSQQQLLQWMVDDRVAGPLIRAVLPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG + R
Sbjct: 225 WFIADKTG------------AGERGARGIVALLGPDGKPER 253
>gi|21465758|pdb|1JWP|A Chain A, Structure Of M182t Mutant Of Tem-1 Beta-Lactamase
gi|22219359|pdb|1M40|A Chain A, Ultra High Resolution Crystal Structure Of Tem-1
gi|34810264|pdb|1NXY|A Chain A, Crystal Structure Of The Complex Between M182t Mutant Of
Tem-1 And A Boronic Acid Inhibitor (Sm2)
gi|34810265|pdb|1NY0|A Chain A, Crystal Structure Of The Complex Between M182t Mutant Of
Tem-1 And A Boronic Acid Inhibitor (Nbf)
gi|34810266|pdb|1NYM|A Chain A, Crystal Structure Of The Complex Between M182t Mutant Of
Tem-1 And A Boronic Acid Inhibitor (Cxb)
gi|34810267|pdb|1NYY|A Chain A, Crystal Structure Of The Complex Between M182t Mutant Of
Tem-1 And A Boronic Acid Inhibitor (105)
gi|47168591|pdb|1PZO|A Chain A, Tem-1 Beta-Lactamase In Complex With A Novel, Core-
Disrupting, Allosteric Inhibitor
Length = 263
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + T A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTTPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|289549537|ref|YP_003470441.1| penicillin binding protein 4 [Staphylococcus lugdunensis HKU09-01]
gi|289179069|gb|ADC86314.1| penicillin binding protein 4 [Staphylococcus lugdunensis HKU09-01]
Length = 269
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 95/244 (38%), Gaps = 33/244 (13%)
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--------------HGHYTTAR 168
+AE + F MN ++ L + THF N G H TTA+
Sbjct: 1 MAEHIDGNSSDFTHRMNRKAQALHMRHTHFNNPSGADNRLIKPFAPSKYKQQHFSKTTAK 60
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----WAVGTFLGADGMKTGFTCAS 224
DMA+L+ ++ P+ + ++ + G NTN GADG+KTG T
Sbjct: 61 DMAVLTQQLVKQHPKVLKITRLTSDKQHGHMLKNTNLSLPAQADGLAGADGLKTG-TSNH 119
Query: 225 GFNIVASAIQGDQSLIAVIL------GALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
G+N+ +A Q + + +V+ ++ R ++S ++ F N RK ++
Sbjct: 120 GYNLALTAKQNNLRIHSVLFQVQPFADERAKHVRQQLSNIMVRRAFKNYDYRKVLSKGQH 179
Query: 279 D------FYQQNLSNEVPN--ISEEVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLK 330
+ +++L + VP + + ++ Q ++ K++ +K
Sbjct: 180 RIQGKMYYVKKDLYDVVPKDHKGYQFKINHGKYVHLTYQRSFLPGTHPPKVEVVKVSGMK 239
Query: 331 NKIT 334
I
Sbjct: 240 RPIV 243
>gi|160285591|pdb|2J7V|A Chain A, Structure Of Pbp-A
gi|160285592|pdb|2J7V|B Chain B, Structure Of Pbp-A
gi|160285593|pdb|2J7V|C Chain C, Structure Of Pbp-A
gi|160285594|pdb|2J7V|D Chain D, Structure Of Pbp-A
gi|161172129|pdb|2J8Y|A Chain A, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
gi|161172130|pdb|2J8Y|B Chain B, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
gi|161172131|pdb|2J8Y|C Chain C, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
gi|161172132|pdb|2J8Y|D Chain D, Structure Of Pbp-A Acyl-Enzyme Complex With Penicillin-G
Length = 298
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 15/258 (5%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+S Y + ++G + D + AS K F + E + L
Sbjct: 27 LVSRQPNLTAGLYF-FNLDSGASL-NVGGDQVFPAASTIKFPILVAFFKAVDEGRVTLQE 84
Query: 79 PITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+T+ + + + K S +L+I S N I + L
Sbjct: 85 RLTMRPDLIAPEAGTLQYQKPNSQYAALEVAELMITISDNTATNMIIDRL-----GGAAE 139
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
+N + GL T N ++ + T+ RD+A L + + L+I
Sbjct: 140 LNQQFQEWGLENTVINNPLPDMKGTNTTSPRDLATLML-KIGQGEILSPRSRDRLLDIMR 198
Query: 198 KKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL-----GALDRNT 251
+ NT G GA KTG + + Q +A ++ +
Sbjct: 199 RTVTNTLLPAGLGKGATIAHKTGDIGIVVGDAGMVDMPNGQRYVAAMMVKRPYNDPRGSE 258
Query: 252 RNKVSASLLSMGFYNKTD 269
+ + ++ F +
Sbjct: 259 LIRQVSRMVYQAFEKLSP 276
>gi|145558692|gb|ABP73259.1| beta-lactamase TEM-131 [Salmonella sp. 467]
Length = 263
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 49/153 (32%), Gaps = 13/153 (8%)
Query: 11 AMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ FP + ET Y LD N+G ++ P+ + S K+
Sbjct: 2 FFAAFCFPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 61
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 62 LLCGAVLSRVDAGQEQLGRRIHYSQNDLVKYSPVTEKHLTDGMTVRELCSAAITMSDNTA 121
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSAT 150
A + ++ ++ F+ +M + L
Sbjct: 122 ANLLLTTIGGPKELTAFLHNMGDHVTRLDSWEP 154
>gi|22299658|ref|NP_682905.1| putative beta-lactamase [Thermosynechococcus elongatus BP-1]
gi|22295842|dbj|BAC09667.1| tll2115 [Thermosynechococcus elongatus BP-1]
Length = 368
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 15/258 (5%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+S Y + ++G + D + AS K F + E + L
Sbjct: 118 LVSRQPNLTAGLYF-FNLDSGASL-NVGGDQVFPAASTIKFPILVAFFKAVDEGRVTLQE 175
Query: 79 PITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
+T+ + + + K S +L+I S N I + L
Sbjct: 176 RLTMRPDLIAPEAGTLQYQKPNSQYAALEVAELMITISDNTATNMIIDRL-----GGAAE 230
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
+N + GL T N ++ + T+ RD+A L + + L+I
Sbjct: 231 LNQQFQEWGLENTVINNPLPDMKGTNTTSPRDLATLML-KIGQGEILSPRSRDRLLDIMR 289
Query: 198 KKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL-----GALDRNT 251
+ NT G GA KTG + + Q +A ++ +
Sbjct: 290 RTVTNTLLPAGLGKGATIAHKTGDIGIVVGDAGMVDMPNGQRYVAAMMVKRPYNDPRGSE 349
Query: 252 RNKVSASLLSMGFYNKTD 269
+ + ++ F +
Sbjct: 350 LIRQVSRMVYQAFEKLSP 367
>gi|115035|sp|P05192|BLAC_KLEPN RecName: Full=Beta-lactamase; AltName: Full=Penicillinase; Flags:
Precursor
gi|43813|emb|CAA28198.1| unnamed protein product [Klebsiella pneumoniae]
Length = 279
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 65/265 (24%), Gaps = 25/265 (9%)
Query: 1 MR--QFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTL-LDTNTGHVIAENYPDH 49
MR + VI +A L + + +D G +A D
Sbjct: 1 MRYVRLCVISLLATLPLVVYAGPQPLEQIKQSESQLSGRVGMVEMDLANGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPVSEKHLVDGMTIGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPPGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPDGKPER 253
>gi|254839213|pdb|2ZQ8|A Chain A, Apo Structure Of Class A Beta-Lactamase Toho-1 R274nR276N
Double Mutant
Length = 262
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 68/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 27 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 84
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 85 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 144
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 145 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 204
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A +RN +A +++ GF
Sbjct: 205 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAENRNDILAAAAKIVTHGF 262
>gi|315364376|pdb|2XR0|A Chain A, Room Temperature X-Ray Structure Of The Perdeuterated
Toho-1 R274n R276n Double Mutant Beta-Lactamase
Length = 260
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 68/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 25 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 82
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 83 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 142
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 143 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 202
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A +RN +A +++ GF
Sbjct: 203 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAENRNDILAAAAKIVTHGF 260
>gi|256862204|gb|ACV32637.1| beta-lactamase Shv127 [Klebsiella pneumoniae]
Length = 271
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRFIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPNNNAER 253
>gi|8469132|sp|P74841|BLC2_SALTY RecName: Full=Beta-lactamase CTX-M-2; AltName: Full=Cefotaximase 2;
Flags: Precursor
gi|1524366|emb|CAA63263.1| ES-beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|16304822|emb|CAC95174.1| CTX-M-2 beta-lactamase [Proteus mirabilis]
gi|18307538|emb|CAD20939.1| beta-lactamase CTX-M-2 [Salmonella enterica subsp. enterica serovar
Infantis]
gi|20086227|gb|AAM03345.1| beta-lactamase CTX-M-2 [Proteus mirabilis]
gi|41023646|emb|CAF18338.1| beta-lactamase CTX-M-2 precursor [Morganella morganii subsp.
morganii]
gi|50726689|dbj|BAD34451.1| beta-lactamase CTX-M-2 [Acinetobacter baumannii]
gi|53988350|gb|AAV28216.1| beta-lactamase CTX-M-2 [Escherichia coli]
gi|68262577|emb|CAJ13506.1| beta-lactamase CTX-M-2 precursor [Klebsiella pneumoniae]
gi|68262580|emb|CAJ13508.1| beta-lactamase CTX-M-2 precursor [Klebsiella pneumoniae]
gi|71273554|emb|CAJ13620.1| beta-lactamase [Escherichia coli]
gi|71273565|emb|CAJ13630.1| beta-lactamase [Escherichia coli]
gi|74055071|gb|AAZ95872.1| beta lactamase CTX-M-2 [Escherichia coli]
gi|84180563|gb|ABC54728.1| beta-lactamase CTX-M-2 precursor [Vibrio cholerae]
gi|148615578|gb|ABQ96621.1| beta-lactamase CTX-M-2 [Salmonella enterica subsp. enterica serovar
Virchow]
gi|148615589|gb|ABQ96631.1| beta-lactamase CTX-M-2 [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|157139474|gb|ABV24345.1| extended spectrum beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
gi|171674367|gb|ACB47942.1| CTX-M-2 [Klebsiella pneumoniae]
gi|184216057|gb|ACC77477.1| CTX-M-2 [Klebsiella pneumoniae]
gi|184216066|gb|ACC77485.1| CTX-M-2 [Klebsiella pneumoniae]
gi|184216074|gb|ACC77492.1| CTX-M-2 [Klebsiella pneumoniae]
gi|184216082|gb|ACC77499.1| CTX-M-2 [Klebsiella pneumoniae]
gi|184216090|gb|ACC77506.1| CTX-M-2 [Klebsiella pneumoniae]
gi|192822653|gb|ACF06162.1| beta-lactamase CTX-M2 [Klebsiella pneumoniae]
gi|225579648|gb|ACN93993.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579658|gb|ACN93998.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579660|gb|ACN93999.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579662|gb|ACN94000.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579664|gb|ACN94001.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579668|gb|ACN94003.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579674|gb|ACN94006.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579678|gb|ACN94008.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579684|gb|ACN94011.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579686|gb|ACN94012.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579688|gb|ACN94013.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579690|gb|ACN94014.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579696|gb|ACN94017.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579698|gb|ACN94018.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579702|gb|ACN94020.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579710|gb|ACN94024.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579712|gb|ACN94025.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579724|gb|ACN94031.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579730|gb|ACN94034.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|225579734|gb|ACN94036.1| beta-lactamase blaCTX-M-2 [Klebsiella pneumoniae]
gi|270267860|gb|ACZ65510.1| beta-lactamse CTX-M-2 [Escherichia coli]
gi|288872167|dbj|BAI70510.1| beta-lactamase [Proteus mirabilis]
gi|288872170|dbj|BAI70512.1| beta-lactamase [Proteus mirabilis]
gi|288872173|dbj|BAI70514.1| beta-lactamase [Proteus mirabilis]
gi|288872176|dbj|BAI70516.1| beta-lactamase [Proteus mirabilis]
gi|294862105|gb|ADF45647.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
gi|294862107|gb|ADF45648.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
gi|294862109|gb|ADF45649.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
gi|294862111|gb|ADF45650.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
gi|294862113|gb|ADF45651.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
gi|294862115|gb|ADF45652.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
gi|294862117|gb|ADF45653.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
gi|294862119|gb|ADF45654.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
gi|294862121|gb|ADF45655.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
gi|294862123|gb|ADF45656.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
gi|294862125|gb|ADF45657.1| beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
gi|1588604|prf||2209219B cefotaximase CTX-M-2
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDILAAAAKIVTHGF 291
>gi|56069565|gb|AAV70602.1| beta lactamase CTX-M-38 [Klebsiella pneumoniae]
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 71/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAARIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|82655066|emb|CAJ19601.1| OKP-A beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/276 (13%), Positives = 71/276 (25%), Gaps = 17/276 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + + + + + + Y +D +G +A
Sbjct: 1 MRYVRLCLFSLIAALPLAVFASPPPLEQITRSESQLAGRVGYVEMDLASGRTLAAWRASE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPLMSTFKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTSHTLSARSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRG 240
Query: 228 IVASAIQGDQ--SLIAVILGAL--DRNTRNKVSASL 259
IVA + ++ + L RN+ A +
Sbjct: 241 IVALLGPNGKAERIVVIYLRDTPATMAERNQQIARI 276
>gi|229489777|ref|ZP_04383634.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodococcus erythropolis SK121]
gi|229323287|gb|EEN89051.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodococcus erythropolis SK121]
Length = 469
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 20/54 (37%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + D TG+++ P P PAS TK++TA
Sbjct: 84 IAAAIGPAVANPDLGKFTGVVADALTGNILWSTDPSTPMTPASTTKVLTASAAL 137
>gi|21637408|gb|AAM70498.1|AF518567_4 beta-lactamase CTX-M-25 [Escherichia coli]
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 40/292 (13%), Positives = 80/292 (27%), Gaps = 30/292 (10%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHV 41
MR+ + +++L P + A + L ++ +
Sbjct: 2 MRKSVRRAMLMTTACVSLLLASVPLCAQANDVQQKLAALEKSSGGRLGVALINTADNTQT 61
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M V + +K +L+ + I + + T
Sbjct: 62 LY--RADERFAMCSTSKVMAVAAVLKQSETQKGLLSQRVEIKPSDLINYNPIAEKHVNGT 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MT + S N + L +K F + + + + L + A
Sbjct: 120 MTFGELSAAALQYSDNTAMNKLIAHLGGPDKVTAFARTIGDDTFRLDRTEPTLNTAIPGD 179
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T L + Q+ + A G KTG
Sbjct: 180 PRDTTTPLAMAQALRNLTLGNALGDTQRAQLVMWLKGNTTGAASIQAGLPTSWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G+
Sbjct: 240 SGGYGTTNDIAVIWPEGRAPLVLVTYFTQSEPKAESRRDVLAAAARIVTDGY 291
>gi|22725673|gb|AAN04884.1| beta-lactamase SHV-42 [Klebsiella pneumoniae]
gi|124053907|gb|ABM89160.1| SHV type beta lactamase [Klebsiella pneumoniae]
Length = 286
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + S + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHSSPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITVSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|155049569|gb|ABS90365.1| extended spectrum beta-lactamase CTX-M-67 [Escherichia coli]
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYSPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|148357346|gb|ABQ59093.1| TEM beta-lactamase [Acinetobacter baumannii]
Length = 159
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 47/153 (30%), Gaps = 8/153 (5%)
Query: 6 VIIAMAMLSNIFPFLS-----IAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
A + P + Y LD N+G ++ P+ + S K+
Sbjct: 1 FFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKV 60
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ V S + + L I S+N + MT+ I S N
Sbjct: 61 LLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMSDNTA 120
Query: 120 AVAIAESLCKTEK--KFVQHMNNTSKNLGLSAT 150
A + ++ ++ F+ +M + L
Sbjct: 121 ANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEP 153
>gi|208503083|gb|ACI29348.1| extended spectrum CTX-M-86 beta-lactamase [Salmonella enterica
subsp. enterica serovar Agona]
Length = 291
Score = 50.0 bits (117), Expect = 5e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPFAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|82655070|emb|CAJ19603.1| OKP-A beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 50.0 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 71/269 (26%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAAFASPQPLEQVTRSESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDERLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKRVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG IVA
Sbjct: 188 KLLTSHALSDRSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILGAL--DRNTRNKVSASL 259
+ ++ + L RN+ A +
Sbjct: 248 NGKAERIVVIYLRDTPATMAERNQQIAKI 276
>gi|7381165|gb|AAF61417.1|AF135373_1 class A beta-lactamase blaCARB-5 [Acinetobacter calcoaceticus
subsp. anitratus]
Length = 298
Score = 50.0 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/292 (12%), Positives = 82/292 (28%), Gaps = 19/292 (6%)
Query: 5 LVIIAMAMLSNIF-----PFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTK 58
+ + +++ +N + + D TG E+ + + +S K
Sbjct: 17 FLCLTLSLNANATDSVLEAVTNAETELGARIGLAVHDLETGKR-WEHKSNERFPLSSTFK 75
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST-MTLDNALKLLIVKSAN 117
+ V + K + + S++ + G M+L + + S N
Sbjct: 76 TLACANVLQRVDLGKERIDRVVRFSESNLVTYSPVTEKHVGKKGMSLAELCQATLSTSDN 135
Query: 118 DIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
A I +++ + KF++ + + + L T A + T + L
Sbjct: 136 SAANFILQAIGGPKALTKFLRSIGDDTTRLDRWETELNEAVPGDKRDTTTPIAMVTTLEK 195
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ + Q++ + +TG I A
Sbjct: 196 LLIDETLSIKSRQQLESWLKGNEVGDALFRKGVPSDWIVADRTGAGGYGSRAITAVMWPP 255
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
++ I L + + + N K I K +N N
Sbjct: 256 NRKPIVAALYITETDASFEE---------RNAVIAKIGEQIAKTVLMENSRN 298
>gi|146260122|gb|ABQ14402.1| beta-lactamase [uncultured soil bacterium]
Length = 272
Score = 50.0 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/271 (13%), Positives = 76/271 (28%), Gaps = 14/271 (5%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ +
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMG 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TLKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + +
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTM 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
+ I VI + T ++ + + +G
Sbjct: 241 PDGKPSRIVVIYTTGSQATMDERNRQIAEIG 271
>gi|228965490|ref|ZP_04126576.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228794220|gb|EEM41738.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 143
Score = 50.0 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 33/81 (40%)
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ K + G DG++T F+ ++ V++A GD LI+VIL
Sbjct: 9 YQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLGDTRLISVIL 68
Query: 245 GALDRNTRNKVSASLLSMGFY 265
A + N + LL GF
Sbjct: 69 DADEENISFIETKKLLQYGFD 89
>gi|55824373|gb|AAV66328.1| beta-lactamase SHV-59 [Klebsiella pneumoniae]
Length = 286
Score = 50.0 bits (117), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N +A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSVANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|315940013|gb|ADU56217.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
gi|315940015|gb|ADU56218.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
Length = 291
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 73/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L + Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLSHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|48525543|gb|AAT45022.1| beta-lactamase KLUY-3 [Kluyvera sp. N03-0460]
gi|56131251|gb|AAV80248.1| beta-lactamase KLUY-3 [Kluyvera sp. N03-0459]
Length = 291
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPDHP 50
F + +L P + + L+D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLATLEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIRPTDLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|315502186|ref|YP_004081073.1| d-alanyl-d-alanine
carboxypeptidase/d-alanyl-d-alanine-endopeptidase
[Micromonospora sp. L5]
gi|315408805|gb|ADU06922.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Micromonospora sp. L5]
Length = 527
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 12 MLSNIFPFLSIAETNKLPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ + I L+ + N ++DT TG + + PAS TKL+T+ L
Sbjct: 39 LNATIDAVLADSRLNGAQAGVVVVDTTTGRTLYDRNGTRRLIPASNTKLLTSAAAMELLG 98
Query: 71 EKK 73
Sbjct: 99 PGH 101
>gi|24158843|pdb|1LI0|A Chain A, Crystal Structure Of Tem-32 Beta-Lactamase At 1.6 Angstrom
Length = 263
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMISTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + T A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTTPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|289433511|ref|YP_003463383.1| beta-lactamase family protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289169755|emb|CBH26291.1| beta-lactamase family protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 259
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/233 (11%), Positives = 60/233 (25%), Gaps = 14/233 (6%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ D V+ D + AS+ KL F + + + L T + IS +
Sbjct: 14 IHSKALYITDGK--QVLFAENEDQLYTAASVIKLPIYLYFFEKISKGELDLRTEVHISAD 71
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
+L + + + ++ +
Sbjct: 72 KVVAGAGIIQILPEK-----RTWRLEELLHLMIAVSDNTATNQLIDLATFSNLQAWIRAK 126
Query: 146 GLSATHFMNAHGVV---QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
G + + + + TA+ + I QY + + +++ +
Sbjct: 127 GWEQSVQIERKMMDFKSDKQNEITAKLAVTVFQEIIELSKQYPNLTETIRRPFLNQQHRS 186
Query: 203 TNWAVGTFLGADG----MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
G G KTG ++ +G+ +A +
Sbjct: 187 NLTGTLEEAGIAGLSMLNKTGELKDIQHDVAIFEYEGETRFVAALTNNTGLEA 239
>gi|87309492|ref|ZP_01091627.1| hypothetical protein DSM3645_24360 [Blastopirellula marina DSM
3645]
gi|87287800|gb|EAQ79699.1| hypothetical protein DSM3645_24360 [Blastopirellula marina DSM
3645]
Length = 535
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 11/76 (14%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKL---------PYY--TLLDTNTGHVIAENYPDHPWN 52
L IA+++ +++ + +A + ++D TG + D
Sbjct: 11 ILPAIALSLTASVQAQVLLAPEVDAILQKPMYKDATWGLLVIDLETGDTVYSKNADKQLL 70
Query: 53 PASLTKLMTAYVVFSF 68
S+ KL + +
Sbjct: 71 IGSIRKLFSVGLALDQ 86
>gi|296271401|ref|YP_003654033.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Thermobispora bispora DSM 43833]
gi|296094188|gb|ADG90140.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Thermobispora bispora DSM 43833]
Length = 451
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ + + + ++D TG V+ + P PAS TK++TA V
Sbjct: 60 TLAAKLTSVMGTPGLGPSVAGIVMDARTGAVLFDGRSGKPMTPASTTKVVTAAAVL 115
>gi|270208406|ref|YP_003329180.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
gi|218546442|gb|ACK98831.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
Length = 283
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 3 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 61 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 120
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 121 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 181 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 240
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 241 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 283
>gi|164665316|gb|ABY66120.1| CTX-m-14-like beta-lactamase [Escherichia coli]
Length = 291
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFSQPQQNAESRRDVLASAARIIAEGL 291
>gi|56554763|gb|AAV97952.1| CTX-M type extended spectrum beta-lactamase [Escherichia coli]
Length = 291
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGRRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|56554767|gb|AAV97954.1| CTX-M type extended spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 291
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGRRLGVPLIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|56554769|gb|AAV97955.1| CTX-M type extended spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 291
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVPLIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|48525548|gb|AAT45026.1| beta-lactamase KLUY-2 [Kluyvera sp. N03-0461]
Length = 291
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQRQQNAESRRDVLASAARIIAEGL 291
>gi|305667864|ref|YP_003864338.1| CTX-M-14 beta-lactamase [Escherichia coli]
gi|310286432|ref|YP_003937693.1| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
gi|8101042|gb|AAF72530.1|AF252622_1 beta-lactamase CTX-M-14 [Escherichia coli]
gi|12044295|gb|AAG47784.1|AF311345_1 TOHO-2 like beta-lactamase [Escherichia coli]
gi|14189984|gb|AAK55533.1|AF325133_1 cefotaxime-hydrolyzing beta-lactamase CTX-M-18 [Klebsiella
pneumoniae]
gi|15054448|dbj|BAB62310.1| class A beta-lactamase [Escherichia coli]
gi|16304816|emb|CAC95170.1| CTX-M-14 beta-lactamase [Escherichia coli]
gi|48525533|gb|AAT45014.1| beta-lactamase KLUY-1 [Kluyvera sp. N03-0458]
gi|56201388|dbj|BAD72947.1| extended-spectrum beta-lactamase CTX-M-14 [Salmonella enterica
subsp. enterica serovar Enteritidis]
gi|62548342|gb|AAX86817.1| CTX-M-14 beta-lactamase [Salmonella enterica subsp. enterica
serovar Panama]
gi|68673209|emb|CAJ00135.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|68673217|emb|CAJ00138.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|68673224|emb|CAJ00141.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|68673232|emb|CAJ00145.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
gi|83584428|gb|ABC24984.1| extended spectrum CTX-M-14 beta-lactamase [Klebsiella pneumoniae]
gi|83584430|gb|ABC24985.1| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
gi|84039855|gb|ABC49843.1| extended spectrum CTX-M-14 beta-lactamase [Providencia stuartii]
gi|84657411|gb|ABC60033.1| extended spectrum beta-lactamase CTX-M-14 [Enterobacter cloacae]
gi|86160844|gb|ABC86896.1| beta-lactamase CTX-M 14 [Shigella flexneri]
gi|86160846|gb|ABC86897.1| beta-lactamase CTX-M 14 [Shigella sonnei]
gi|86161574|gb|ABC86920.1| extended spectrum betalactamase CTX-M-14b [Escherichia coli]
gi|126009707|gb|ABN64105.1| beta-lactamase CTX-M-14 [Citrobacter freundii]
gi|133712508|gb|ABO37114.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|147712700|gb|ABQ45878.1| extended-spectrum beta-lactamase CTX-M-14 [Proteus mirabilis]
gi|155573670|gb|ABU24286.1| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
gi|157838786|gb|ABV82974.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
gi|157838791|gb|ABV82978.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
gi|161367440|gb|ABX71156.1| extended-spectrum beta-lactamase CTX-M-14b [Klebsiella pneumoniae]
gi|164665314|gb|ABY66119.1| CTX-m-14-like beta-lactamase [Escherichia coli]
gi|164689250|gb|ABY66904.1| beta-lactamase CTX-m-14-like [Escherichia coli]
gi|213133714|gb|ACJ43256.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
gi|213133724|gb|ACJ43261.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
gi|213133730|gb|ACJ43264.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
gi|214011887|gb|ACJ61682.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
gi|214011889|gb|ACJ61683.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
gi|214011891|gb|ACJ61684.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
gi|221149281|gb|ACM04464.1| CTX-M-14 extended spectrum beta-lactamase [Escherichia coli]
gi|260779992|gb|ACX50625.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
gi|260779998|gb|ACX50628.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
gi|260914769|gb|ACX54238.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|260914771|gb|ACX54239.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|260914773|gb|ACX54240.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|260914776|gb|ACX54242.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|260914779|gb|ACX54244.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|260914782|gb|ACX54246.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
gi|260914785|gb|ACX54248.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
gi|260914788|gb|ACX54250.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
gi|260914791|gb|ACX54252.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|260914794|gb|ACX54254.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|260914797|gb|ACX54256.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|260914799|gb|ACX54257.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|260914805|gb|ACX54261.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
gi|260914808|gb|ACX54263.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|260914810|gb|ACX54264.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|260914813|gb|ACX54266.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|268634794|gb|ACZ16616.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|268634800|gb|ACZ16621.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|268634810|gb|ACZ16629.1| beta-lactamase CTX-M-14 [Escherichia coli]
gi|281333458|gb|ADA61018.1| CTX-M-14 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
gi|295917910|gb|ADG60242.1| BlaCTX-M-14 [Escherichia coli]
gi|304655613|emb|CBM42278.1| CTX-M-14 beta-lactamase [Escherichia coli]
gi|308826761|emb|CBX36017.1| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
gi|310780875|gb|ADK71043.2| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
gi|325301872|gb|ADZ05828.1| CTX-M-14 beta-lactamase [Klebsiella pneumoniae]
gi|329885287|gb|AEC05386.1| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
Length = 291
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|323709063|gb|ADY02546.1| beta-lactamase CTX-M-102 [Escherichia coli]
Length = 291
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQREQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGGYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|8101040|gb|AAF72529.1|AF252621_1 beta-lactamase CTX-M-9a [Escherichia coli]
gi|11178696|gb|AAF05311.2|AF174129_1 betalactamase CTX-M-9 [Escherichia coli]
gi|16304826|emb|CAC95176.1| CTX-M-9 beta-lactamase [Escherichia coli]
gi|71273545|emb|CAJ13580.1| beta-lactamase [Escherichia coli]
gi|71361876|gb|AAZ30046.1| CTX-M-9 [Enterobacter cloacae]
gi|130918110|gb|ABO32643.1| extended-spectrum beta-lactamase CTX-M-9 [Enterobacter aerogenes]
gi|221149277|gb|ACM04461.1| CTX-M-9 extended-spectrum beta-lactamase [Escherichia coli]
gi|299483206|gb|ADJ19345.1| beta-lactamase CTX-M [Escherichia coli]
gi|300391796|gb|ADK11280.1| beta-lactamase CTX-M-9 [Enterobacter cloacae]
Length = 291
Score = 49.6 bits (116), Expect = 6e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTAGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|177667054|gb|ACB73258.1| inhibitor-resistant beta-lactamase SHV-56 [Klebsiella pneumoniae]
Length = 286
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V +TG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADRTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|124021058|gb|ABM88809.1| beta-lactamase CTX-M-14 [Escherichia coli]
Length = 290
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/282 (14%), Positives = 72/282 (25%), Gaps = 24/282 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMG 263
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEG 290
>gi|30171149|gb|AAO59455.1| beta-lactamase CARB-8 [Oligella urethralis]
Length = 298
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/292 (12%), Positives = 82/292 (28%), Gaps = 19/292 (6%)
Query: 5 LVIIAMAMLSNIF-----PFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTK 58
+ + +++ +N + + D TG E+ + + +S K
Sbjct: 17 FLCLTLSLNANATDSVLEAVTNAETELGARIGLAVHDLETGKR-WEHKSNERFPLSSTFK 75
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST-MTLDNALKLLIVKSAN 117
+ V + K + + S++ + G M+L + + S N
Sbjct: 76 TLACANVLQRVDLGKERIDRVVRFSESNLVTYSPVTEKHVGKKGMSLAELCQATLSTSDN 135
Query: 118 DIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
A I +++ + KF++ + + + L T A + T + L
Sbjct: 136 SAANFILQAIGGPKALTKFLRSIGDDTTRLDRWETELNEAVPGDKRDTTTPIAMVTTLEK 195
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ + Q++ + +TG I A
Sbjct: 196 LLIDETLSIKSRQQLESWLKGNEVGDALFRKGVPSDWIVADRTGAGGYGSRAITAVMWPP 255
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
++ I L + + + N K I K +N N
Sbjct: 256 NRKPIVAALYITETDASFEE---------RNAVIAKIGEQIAKTILMENSRN 298
>gi|312959134|ref|ZP_07773653.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Pseudomonas fluorescens WH6]
gi|311286904|gb|EFQ65466.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Pseudomonas fluorescens WH6]
Length = 511
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 3 QFLVIIAMAMLSNIFPFLS-----------IAETNKLPYYTLL--DTNTGHVIAENYPDH 49
++L ++ M+ L +S +L+ D +G + ++ P
Sbjct: 36 RWLHLLCMSFLLAGCASVSPSSTATLDQLLADPALNGATVSLMVRDARSGDTLYQHNPHT 95
Query: 50 PWNPASLTKLMTAYVVFS 67
PAS KL+T
Sbjct: 96 RLVPASNLKLLTTAAAME 113
>gi|51105097|gb|AAT97108.1| extended-spectrum beta-lactamase SHV-5 [Escherichia coli]
gi|51105101|gb|AAT97110.1| extended-spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|51105103|gb|AAT97111.1| extended-spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|51105107|gb|AAT97113.1| extended-spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|51105111|gb|AAT97115.1| extended-spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|51105113|gb|AAT97116.1| extended-spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|51105115|gb|AAT97117.1| extended-spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
gi|51105117|gb|AAT97118.1| extended-spectrum beta-lactamase SHV-5 [Klebsiella pneumoniae]
Length = 286
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
M + I + + + + + +D +G + D
Sbjct: 1 MLYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----ASKRGARGIVALLGPNNKAER 253
>gi|46309188|emb|CAG25817.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 56/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 93 SEKHLVDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPAG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG + R
Sbjct: 213 WFIADKTG------------AGERGARGIVALLGPDGKPER 241
>gi|46309210|emb|CAG25828.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 56/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + + L T
Sbjct: 93 SEKHLVDGMTIGELCAAAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + Q+ + + AV
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPAG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG + R
Sbjct: 213 WFIADKTG------------AGERGARGIVALLGPDGKPER 241
>gi|221149272|gb|ACM04459.1| SHV-109 beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/260 (13%), Positives = 68/260 (26%), Gaps = 21/260 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPA 54
R + ++A L+ + + + +D +G + D +
Sbjct: 6 RCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMM 65
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S K++ V + + L I + S MT+ I
Sbjct: 66 STFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITM 125
Query: 115 SANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
S N A + F++ + + L T A T A A
Sbjct: 126 SDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAAT 185
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
L + + Q+ + + +V KTG A
Sbjct: 186 LRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------------A 233
Query: 233 IQGDQSLIAVILGALDRNTR 252
+ I +LG ++ R
Sbjct: 234 GERGARGIVALLGPNNKAER 253
>gi|160858186|emb|CAI30650.2| beta-lactamase SHV-61 [Klebsiella pneumoniae]
Length = 286
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/260 (13%), Positives = 68/260 (26%), Gaps = 21/260 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPA 54
R + ++A L+ + + + +D +G + D +
Sbjct: 6 RCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMM 65
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S K++ V + + L I + S MT+ I
Sbjct: 66 STFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITM 125
Query: 115 SANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
S N A + F++ + + L T A T A A
Sbjct: 126 SDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAAT 185
Query: 173 LSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
L + + Q+ + + +V KTG A
Sbjct: 186 LRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------------A 233
Query: 233 IQGDQSLIAVILGALDRNTR 252
+ I +LG ++ R
Sbjct: 234 GERGARGIVALLGPNNKAER 253
>gi|239909269|gb|ACS32293.1| extended spectrum beta-lactamase CTX-M-74 [Enterobacter cloacae]
Length = 291
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L + T
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTETTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDILAAAAKIVTHGF 291
>gi|157676816|emb|CAJ32371.1| beta-lactamase [Escherichia coli]
Length = 277
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V +TG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADRTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|57157567|dbj|BAD83773.1| beta-lactamase CTX-M-35 [Klebsiella pneumoniae]
gi|57157569|dbj|BAD83774.1| beta-lactamase CTX-M-35 [Escherichia coli]
gi|57157571|dbj|BAD83775.1| beta-lactamase CTX-M-35 [Klebsiella oxytoca]
Length = 291
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L + +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTESTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDILAAAAKIVTHGF 291
>gi|254839212|pdb|2ZQ7|A Chain A, Apo Structure Of Class A Beta-Lactamase Toho-1
E166aR274NR276N TRIPLE MUTANT
gi|254839214|pdb|2ZQ9|A Chain A, Cephalothin Acyl-Intermediate Structure Of Class A Beta-
Lactamase Toho-1 E166aR274NR276N TRIPLE MUTANT
gi|254839215|pdb|2ZQA|A Chain A, Cefotaxime Acyl-Intermediate Structure Of Class A
Beta-Lacta Toho-1 E166aR274NR276N TRIPLE MUTANT
gi|254839216|pdb|2ZQC|A Chain A, Aztreonam Acyl-Intermediate Structure Of Class A
Beta-Lactam Toho-1 E166aR274NR276N TRIPLE MUTANT
gi|254839217|pdb|2ZQD|A Chain A, Ceftazidime Acyl-Intermediate Structure Of Class A
Beta-Lact Toho-1 E166aR274NR276N TRIPLE MUTANT
Length = 262
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 69/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 27 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 84
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +A
Sbjct: 85 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTAPTLN 144
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 145 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 204
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A +RN +A +++ GF
Sbjct: 205 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAENRNDILAAAAKIVTHGF 262
>gi|254514620|ref|ZP_05126681.1| beta-lactamase [gamma proteobacterium NOR5-3]
gi|219676863|gb|EED33228.1| beta-lactamase [gamma proteobacterium NOR5-3]
Length = 334
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 3/102 (2%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98
G ++ D P+ AS K+ A + + + + L + + A + ++
Sbjct: 65 GRILV--NADEPFPMASTYKIPIAITLLRRIDQGELRLDQLVPVPDEAVVFSQIIASAFP 122
Query: 99 GSTMTLDNALKLLIVKSA-NDIAVAIAESLCKTEKKFVQHMN 139
S +T+ A + ++ + ++ A I L + + M
Sbjct: 123 HSGVTISVANLIEVMITYSDNTATDICLELAGGPEAVTKTMR 164
>gi|18129361|emb|CAD20591.1| beta-lactamase class A [Kluyvera ascorbata]
Length = 291
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESNKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIQAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDVLAAAAKIVTHGF 291
>gi|75465013|sp|Q9EZQ7|BLAC_NOCAS RecName: Full=Beta-lactamase AST-1; Flags: Precursor
gi|12006348|gb|AAG44836.1|AF279904_1 class A beta-lactamase AST-1 [Nocardia asteroides]
Length = 310
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 35/248 (14%), Positives = 65/248 (26%), Gaps = 6/248 (2%)
Query: 9 AMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++ + P + ET +DT +G + D + AS K + +
Sbjct: 44 SVTTSAVADPRFAELETTSGARLGVFAVDTGSGRT-VAHRADERFPMASTFKGLACGALL 102
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE- 125
I S + + + MT+ I S N + +
Sbjct: 103 REHPLSTGYFDQVIHYSAAELVEYSPVTETRVETGMTVRELCDAAITVSDNTAGNQLLKL 162
Query: 126 -SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQY 184
+ ++ + + + L T A + T A A + D
Sbjct: 163 LGGPEGFTASLRSLGDATSRLDRWETDLNTAIPGDERDTTTPAALAADYRALVVGDVLGA 222
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
Q+K + A G KTG VA A + ++ +
Sbjct: 223 PERDQLKAWLVANTTGATRIRAGLPADWTVGDKTGSPAYGSALDVAVAWPPGRAPIVIAV 282
Query: 244 LGALDRNT 251
L
Sbjct: 283 LSTKSEQD 290
>gi|18129359|emb|CAD20590.1| beta-lactamase class A [Kluyvera ascorbata]
gi|82569006|emb|CAJ31231.1| beta-lactamase KLUA-9 [Kluyvera ascorbata]
Length = 291
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIQAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAIIWPENHAPLVLVTYFTQPDQKAESRRDVLAAAAKIVTHGF 291
>gi|30409762|gb|AAO61597.1| beta-lactamase CTX-M-27 [Escherichia coli]
gi|164665312|gb|ABY66118.1| CTX-m-14-like beta-lactamase [Escherichia coli]
gi|196127864|gb|ACG70200.1| CTX-M-27 beta-lactamase [Escherichia coli]
gi|213133726|gb|ACJ43262.1| CTX-M-27 extended-spectrum beta-lactamase [Escherichia coli]
gi|213133728|gb|ACJ43263.1| CTX-M-27 extended-spectrum beta-lactamase [Escherichia coli]
gi|213133732|gb|ACJ43265.1| CTX-M-27 extended-spectrum beta-lactamase [Escherichia coli]
gi|221149289|gb|ACM04467.1| CTX-M-27 extended-spectrum beta-lactamase [Escherichia coli]
gi|260779990|gb|ACX50624.1| CTX-M-27 extended-spectrum beta-lactamase [Escherichia coli]
gi|260779994|gb|ACX50626.1| CTX-M-27 extended-spectrum beta-lactamase [Escherichia coli]
gi|282192948|gb|ADA81877.1| extended-spectrum beta-lactamase [Escherichia coli]
Length = 291
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGGYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|323710402|gb|ADY02602.1| beta-lactamase blaTEM [Shigella dysenteriae 2a]
Length = 263
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 2/123 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 30 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 89
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 90 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 149
Query: 148 SAT 150
Sbjct: 150 WEP 152
>gi|134133921|gb|ABO61018.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 298
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 58/203 (28%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G + D + S K M A V S + A+L T + +
Sbjct: 57 LLDTASGRR-FGHRQDERFPMCSTFKSMLAATVLSQAERTPALLDTRVPVRDADLLSHAP 115
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +
Sbjct: 116 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDAVSRSDRLEP 175
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A L + + Q Q+ I + A
Sbjct: 176 ELNSFAEGDPRDTTTPAAMAMTLQRVMMGEVLQPASRQQLADWLIDNETGDACLRAGLGK 235
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 236 RWRVGDKTGSNGEDARNDIAVLW 258
>gi|208503047|gb|ACI29346.1| extended spectrum CTX-M-84 beta-lactamase [Salmonella enterica
subsp. enterica serovar Derby]
Length = 291
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVAWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|198042727|gb|ABV83044.3| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 303
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 58/203 (28%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G + D + S K M A V S + A+L T + +
Sbjct: 62 LLDTASGRR-FGHRQDERFPMCSTFKSMLAATVLSQAERTPALLDTRVPVRDADLLSHAP 120
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +
Sbjct: 121 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDAVSRSDRLEP 180
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A L + + Q Q+ I + A
Sbjct: 181 ELNSFAEGDPRDTTTPAAMAMTLQRVMMGEVLQPASRQQLADWLIDNETGDACLRAGLGK 240
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 241 RWRVGDKTGSNGEDARNDIAVLW 263
>gi|68165961|gb|AAY87934.1| TEM-1 beta-lactamase [Klebsiella pneumoniae]
Length = 156
Score = 49.6 bits (116), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 2/123 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 27 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 86
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 87 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 146
Query: 148 SAT 150
Sbjct: 147 WEP 149
>gi|15858854|gb|AAK32961.1| beta-lactamase CTX-M-16 [Escherichia coli]
Length = 291
Score = 49.6 bits (116), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTAGDKTGSGGYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|60359800|dbj|BAD90119.1| beta-lactamase CTX-M-63 [Klebsiella pneumoniae]
gi|189304727|gb|ACD86346.1| blaCTX-M-63 [Morganella morganii]
Length = 290
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 69/256 (26%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
+ +++L P + A + L +D + + D
Sbjct: 10 LMTTACISLLLGSAPLYAQANDVQQKLAALEKSSGGRLGVALIDTADNAQTLY--RADER 67
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L+ + I + + TMTL
Sbjct: 68 FAMCSTSKVMAAAAVLKQSETQKNVLSQKVEIKSSDLINYNPIAEKHVNGTMTLAELSAA 127
Query: 111 LIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + L +K F + + + + L + A T
Sbjct: 128 ALQYSDNTAMNKLIAHLGGPDKVTAFARAIGDDTFRLDRTEPTLNTAIPGDPRDTTTPLA 187
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 188 MAQTLRHLTLGSALGETQRAQLVTWLKGNTTGAASIQAGLPTSWVVGDKTGSGDYGTTND 247
Query: 229 VASAIQGDQ-SLIAVI 243
+A + LI V
Sbjct: 248 IAVIWPEGRAPLILVT 263
>gi|323691461|ref|ZP_08105733.1| hypothetical protein HMPREF9475_00595 [Clostridium symbiosum
WAL-14673]
gi|323504507|gb|EGB20297.1| hypothetical protein HMPREF9475_00595 [Clostridium symbiosum
WAL-14673]
Length = 252
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/243 (14%), Positives = 73/243 (30%), Gaps = 15/243 (6%)
Query: 26 NKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ ++ D TG E D + ASL K+ +F KE + L I + K
Sbjct: 10 IEGKKAIVIEDLKTGEA-VEINRDEVFPAASLIKVPVLSALFRMAKENQIALDERIELEK 68
Query: 85 NASE-YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ G + + L+I S N A + + + + +N+ +
Sbjct: 69 DSRIGGFGILKDLGDGLNPAVRDLAVLMITLSDNIAANLLIDRI------GMSQINSELQ 122
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+G + + + K F+ L+I ++ N
Sbjct: 123 AMG-MKHTVLQRKMMDSQAKERGLDNYTSAGDMQKLMKAILESSFRGDILDILFRQQCNN 181
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR-----NKVSAS 258
G + D+ +IA++L + R N+
Sbjct: 182 KLPALMEGGVRFAHKTGDLPGVEHDAGIICTDDREIIAIVLTDELADNREGIWLNQEIGK 241
Query: 259 LLS 261
L++
Sbjct: 242 LIN 244
>gi|226432217|gb|ACO55654.1| TER-2 beta-lactamase [Raoultella terrigena]
Length = 284
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 67/232 (28%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G ++A PD + S K+ V + + + L + +
Sbjct: 45 LDLASGRLLASYRPDERFPMMSTFKVPLCAAVLARVDAGEEKLDRRVRYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ MT+ I S N A + + + F++ + + L T
Sbjct: 105 TEKHLADGMTVAELCAAAITLSDNTAANLLLASVGGPQGLTAFLRRSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ + K +
Sbjct: 165 LNEALPGDARDTTTPQAMAKTLRNLLTGSVLSAASRQQLRSWMVDDKVAGPLLRSALPHG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
KTG I+A+ Q ++ + L G + RN+ A +
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGQPARIVIIYLTGTEASMDERNRQIAEI 276
>gi|315940011|gb|ADU56216.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
Length = 291
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 73/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQSSAVRQKLAALEKSSGGRQGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|4218927|gb|AAD12233.1| oxacillinase [Ralstonia pickettii]
Length = 274
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/211 (13%), Positives = 55/211 (26%), Gaps = 2/211 (0%)
Query: 32 TLLDTNTGH-VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ D TG V+ E D PAS KL A + F K +
Sbjct: 28 IVADAATGKAVLHEGKCDERVTPASTFKLALAVMGFDHGFLKDEHTPVEHFRHGDPDWGG 87
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ + + + + A + K + + KN G+ +
Sbjct: 88 EAWHQPIDPALWLKYSVVWYSQRITHAMGAQTFQAYVRKLGYGNMDVSGDPGKNNGMDRS 147
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
++ + R + + + + G G
Sbjct: 148 WITSSLKISPEEQVGLMRRIVNRQLPVSAHTYEMLDRTVQTWQVPGGWAVQGKTGTAGPA 207
Query: 211 LGADGMKTGFTCASGFN-IVASAIQGDQSLI 240
G + A + V A +GD++ +
Sbjct: 208 PGNTSPDGTWDQAHAYGWFVGWARKGDKTYV 238
>gi|327440901|dbj|BAK17266.1| D-alanyl-D-alanine carboxypeptidase [Solibacillus silvestris
StLB046]
Length = 472
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL--------PYYTLL-DTNTGHVIAENYPDHPW 51
M++ ++ + L P S A N + D +G ++ D
Sbjct: 1 MKKIFQLVILLALFFSLPIQSFASINGAVTTHLGKSNAAVTIRDAESGKIVYSQNGDKLM 60
Query: 52 NPASLTKL 59
PAS KL
Sbjct: 61 RPASNMKL 68
>gi|82655076|emb|CAJ19606.1| OKP-A beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 72/269 (26%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAAFASPPPLEQVTRSESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG IVA
Sbjct: 188 KLLTSHTLSARSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILGAL--DRNTRNKVSASL 259
+ ++ + L RN+ A +
Sbjct: 248 NGKAERIVVIYLRDTPATMAERNQQIARI 276
>gi|317507764|ref|ZP_07965468.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Segniliparus rugosus ATCC BAA-974]
gi|316253963|gb|EFV13329.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Segniliparus rugosus ATCC BAA-974]
Length = 442
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
++ L +LD +G V+ + D PAS KL+TA
Sbjct: 53 VAAALDPLGENPVLARFSGVVLDGASGQVLWQRDADAAMTPASTMKLVTA 102
>gi|224370116|ref|YP_002604280.1| DacB [Desulfobacterium autotrophicum HRM2]
gi|223692833|gb|ACN16116.1| DacB [Desulfobacterium autotrophicum HRM2]
Length = 393
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 3 QFLVIIAMAMLSNIFP-FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++++++ +AM P ++ Y + D++ G V+ PD + PAS KL+T
Sbjct: 6 KWILLLFLAMALVQSPGAIAGTPKI---GYLVADSH-GKVMDALNPDQAFVPASTFKLLT 61
Query: 62 AYVVFSF 68
A F+
Sbjct: 62 ALGAFNE 68
>gi|146260202|gb|ABQ14429.1| beta-lactamase [uncultured soil bacterium]
Length = 268
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/268 (14%), Positives = 75/268 (27%), Gaps = 17/268 (6%)
Query: 7 IIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWNPAS 55
+ + P + ET Y LD N+G ++ P+ + S
Sbjct: 1 ALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K++ V S + + L I S+N + MT+ I S
Sbjct: 61 TFKVLLRGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAITMS 120
Query: 116 ANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N A + ++ ++ F+ +M + L A + L
Sbjct: 121 DNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPVAMATTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
+ + Q+ K + K+G I+A+
Sbjct: 181 RKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALG 240
Query: 234 QGDQS---LIAVILGAL-DRNTRNKVSA 257
+ +I G+ + RN+ A
Sbjct: 241 PDGKPSRIVIIYTTGSQATMDERNRQIA 268
>gi|14189986|gb|AAK55534.1|AF325134_1 ceftazidime-hydrolyzing beta-lactamase CTX-M-19 [Klebsiella
pneumoniae]
gi|27462658|gb|AAO15538.1|AF458080_8 extended-spectrum beta-lactamase CTX-M-19 [Klebsiella pneumoniae]
Length = 291
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 73/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTESTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|76057847|emb|CAG25815.2| OKP-A beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 71/269 (26%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+IA L+ + + + Y +D +G +A + S
Sbjct: 8 LFSLIAALPLAVFASPQPLEQVTRSESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG IVA
Sbjct: 188 KLLTSHTLSARSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILGAL--DRNTRNKVSASL 259
+ ++ + L RN+ A +
Sbjct: 248 NGKAERIVVIYLRDTPATMAERNQQIARI 276
>gi|21465760|pdb|1JWZ|A Chain A, Crystal Structure Of Tem-64 Beta-Lactamase In Complex With
A Boronic Acid Inhibitor (105)
Length = 263
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 73/237 (30%), Gaps = 3/237 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 20 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVK 79
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 80 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDS 139
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
A + T A L + + Q+ K +
Sbjct: 140 WEPELNEAIPNDERDTTTPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA 199
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALDRNTRNKVSASLLSMG 263
K+G I+A+ + I VI + T ++ + + +G
Sbjct: 200 LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIG 256
>gi|218091990|emb|CAP58291.1| beta-lactamase [Klebsiella pneumoniae]
gi|223635899|emb|CAQ03507.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V K G
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKAG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|90418307|ref|ZP_01226219.1| putative D-alanyl-D-alanine carboxypeptidase [Aurantimonas
manganoxydans SI85-9A1]
gi|90337979|gb|EAS51630.1| putative D-alanyl-D-alanine carboxypeptidase [Aurantimonas
manganoxydans SI85-9A1]
Length = 409
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNK--LPY--YTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ L + +L F + + P +LD + G+ + D P+ PAS+ K
Sbjct: 17 RLLATVFAVLLLQAPAFADVKDRIASLAPSGLVFVLDED-GNELLAQNADQPFVPASVAK 75
Query: 59 LMTAYVVFSF 68
L+TA++
Sbjct: 76 LVTAWLAMEE 85
>gi|90421252|ref|ZP_01229148.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90334493|gb|EAS48283.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 227
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNK--LPY--YTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ L + +L F + + P +LD + G+ + D P+ PAS+ K
Sbjct: 17 RLLATVFAVLLLQAPAFADVKDRIASLAPSGLVFVLDED-GNELLAQNADQPFVPASVAK 75
Query: 59 LMTAYVVFSF 68
L+TA++
Sbjct: 76 LVTAWLAMEE 85
>gi|6137226|gb|AAF04388.1|AF189721_1 beta-lactamase CTX-M-8 precursor [Citrobacter amalonaticus]
Length = 291
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 42/283 (14%), Positives = 78/283 (27%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
+ +++L P + A + L +D + + D
Sbjct: 11 LMTTACISLLLGSAPLYAQANDVQQKLAALEKSSGGRLGVALIDTADNAQTLY--RADER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L+ + I + + TMTL
Sbjct: 69 FAMCSTSKVMAAAAVLKQSETQKKVLSQKVEIKSSDLINYNPITEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + L +K F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAHLGGPDKVTAFARAIGDNTFRLDRTEPTLNTAIPGDPRDTTTPLA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRNLTLGSALGETQRAQLVTWLKGNTTGAASIQAGLPTSWVVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + LI V A R +A +++ G+
Sbjct: 249 IAVIWPEGRAPLILVTYFTQPEQKAESRRDVLAAAAKIVTDGY 291
>gi|257359515|gb|ACV53157.1| beta-lactamase SHV-121 [Klebsiella pneumoniae]
gi|283135094|dbj|BAI65841.1| SHV 121 betalactamase [Klebsiella pneumoniae subsp. pneumoniae]
Length = 286
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLAALPLVVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITVSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|56554771|gb|AAV97956.1| CTX-M type extended spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 291
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTNAVQQKLAALEKSSGGRLGVPLIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|56554765|gb|AAV97953.1| CTX-M type extended spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 291
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTNAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|18129363|emb|CAD20592.1| beta-lactamase class A [Kluyvera ascorbata]
Length = 291
Score = 49.2 bits (115), Expect = 8e-04, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 65/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIQAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSVDYGPTTHIAIIWPENHAPLVLVTYFTQPDQKAESRRDVLAAAAKIVTHGF 291
>gi|302544950|ref|ZP_07297292.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces hygroscopicus ATCC 53653]
gi|302462568|gb|EFL25661.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces himastatinicus ATCC 53653]
Length = 521
Score = 49.2 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D ++G V+ + D PAS TKL T+
Sbjct: 57 AAGVVVADADSGDVLYRHRADDRLMPASNTKLFTSAAAM 95
>gi|315940009|gb|ADU56215.1| CTX-M-14 extended-spectrum beta-lactamase [Escherichia coli]
Length = 291
Score = 49.2 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVRQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|82655062|emb|CAJ19599.1| OKP-A beta-lactamase [Klebsiella pneumoniae]
gi|82655064|emb|CAJ19600.1| OKP-A beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 49.2 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 72/269 (26%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPPPLEQITRSESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG IVA
Sbjct: 188 KLLTSHALSDRSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILGAL--DRNTRNKVSASL 259
+ ++ + L RN+ A +
Sbjct: 248 NGKAERIVVIYLRDTPATMAERNQQIAKI 276
>gi|190576921|ref|YP_001966253.1| beta-lactamase [Klebsiella pneumoniae]
gi|110264505|gb|ABG56868.1| beta-lactamase [Klebsiella pneumoniae]
gi|156601491|gb|ABU86827.1| beta-lactamase [Klebsiella pneumoniae]
gi|157849628|gb|ABV89601.1| beta-lactamase LAP-2 [Enterobacter cloacae]
gi|170284256|gb|ACB12416.1| beta-lactamase LAP-2 [Klebsiella pneumoniae]
gi|170284258|gb|ACB12417.1| beta-lactamase LAP-2 [Klebsiella pneumoniae]
gi|170284260|gb|ACB12418.1| beta-lactamase LAP-2 [Klebsiella pneumoniae]
gi|170284262|gb|ACB12419.1| beta-lactamase LAP-2 [Escherichia coli]
Length = 285
Score = 49.2 bits (115), Expect = 9e-04, Method: Composition-based stats.
Identities = 35/266 (13%), Positives = 71/266 (26%), Gaps = 26/266 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP------------YYTLLDTNTGHVIAENYPD 48
M++ +II + P LS +T +D +G V++ + +
Sbjct: 1 MKKIRLIIISLLAGMCTPALSTPVNVTDTIQSTEDHIKGRVGFTEIDFLSGKVLSSHRRE 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K++ + + + L IT +K+ + ++ MT+
Sbjct: 61 ERFPMMSTFKVLLCGAILVRVDKGLEQLERRITYNKHDLDDYSPLTSQHIADGMTVSELC 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
I S N A + ++ E + L TT
Sbjct: 121 NAAITTSDNTAANLLLSTIGGPEGLTHFLRSTGDSYTRLDRHEPSLNEAKPGDERDTTTP 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGFTCASGF 226
+ + + + K + + KTG
Sbjct: 181 AAMAQTLQKLLNESVLTEKSRKKLISWMQEDKVGGPLFRSVLPAGWMIADKTG------- 233
Query: 227 NIVASAIQGDQSLIAVILGALDRNTR 252
A I +LG + +R
Sbjct: 234 -----AGDHGSRGIVALLGPGGKPSR 254
>gi|312888743|ref|ZP_07748307.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Mucilaginibacter paludis DSM 18603]
gi|311298743|gb|EFQ75848.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Mucilaginibacter paludis DSM 18603]
Length = 469
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 16/81 (19%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAEN 45
M++ L I + + + + + T+LD TG I
Sbjct: 1 MKRLL-IFSFCLAGGFSFAQVLPQKLQAAFNRLQQDSQSRYASVSLTVLDAKTGEQIFAV 59
Query: 46 YPDHPWNPASLTKLMTAYVVF 66
P+ PAS K +T+ F
Sbjct: 60 NPNMGLAPASTLKTVTSITAF 80
>gi|193227727|emb|CAQ42480.1| beta-lactamase [Kluyvera ascorbata]
Length = 291
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIQAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAIIWPENHAPLVLVTYFTQPEQKAESRRDVLAAAAKIVTRGF 291
>gi|148524825|dbj|BAF63422.1| cefotaximase [Shigella sonnei]
gi|256576422|gb|ACU87985.1| extended-spectrum beta-lactamase CTX-M-64 [Enterobacter cloacae]
gi|256576426|gb|ACU87987.1| extended-spectrum beta-lactamase CTX-M-64 [Escherichia coli]
Length = 291
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 39/261 (14%), Positives = 70/261 (26%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + +K +L P+ I + TMTL
Sbjct: 64 RADERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLA 123
Query: 106 NALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + F + + + + L + A
Sbjct: 124 ELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
T L Q+ + A G KTG
Sbjct: 184 TTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|116643125|gb|ABK06382.1| beta-lactamase bla-CTX-M-14 [Escherichia coli]
Length = 288
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 40/279 (14%), Positives = 70/279 (25%), Gaps = 24/279 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLL 260
+A + L+ V A R +A ++
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARII 287
>gi|197724703|emb|CAP12353.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 72/269 (26%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAAFASPPPLEQVTRSESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG IVA
Sbjct: 188 KLLTSHALSARSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILGAL--DRNTRNKVSASL 259
+ ++ + L RN+ A +
Sbjct: 248 NGKAERIVVIYLRDTPATMAERNQQIARI 276
>gi|322366620|gb|ADW95390.1| beta-lactamase SHV-12 [Salmonella enterica subsp. enterica serovar
Rissen]
Length = 265
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 35/257 (13%), Positives = 67/257 (26%), Gaps = 21/257 (8%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASLT 57
+ ++A L+ + + + +D +G + D + S
Sbjct: 1 ISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTF 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K++ V + + L I + S MT+ I S N
Sbjct: 61 KVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDN 120
Query: 118 DIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
A + F++ + + L T A T A A L
Sbjct: 121 SAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRK 180
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ + Q+ + + +V KTG A +
Sbjct: 181 LLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------------ASKR 228
Query: 236 DQSLIAVILGALDRNTR 252
I +LG ++ R
Sbjct: 229 GARGIVALLGPNNKAER 245
>gi|209413818|emb|CAQ42481.2| CTX-M-78 beta-lactamase [Kluyvera georgiana]
Length = 291
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 42/292 (14%), Positives = 81/292 (27%), Gaps = 30/292 (10%)
Query: 1 MRQ------FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHV 41
MR+ + +++L P + A + L ++ +
Sbjct: 2 MRKSVRRAILMTTACVSLLLASVPLYAQANDIQQKLAALEKSSGGRLGVALINTADNTQT 61
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M A V + +K +L+ + I + + T
Sbjct: 62 LY--RADERFAMCSTSKVMAAAAVLKQSETQKDLLSQRVEIKSSDLINYNPIAEKHVNGT 119
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MTL + S N + L K F + + + + L + A
Sbjct: 120 MTLGELSAAALQYSDNTAMNKLIAHLGGPGKVTAFARVIGDDTFRLDRTEPTLNTAIPGD 179
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T L + Q+ + A G KTG
Sbjct: 180 PRDTTTPLAMAQTLRNLTLGNALGDTQRAQLVTWLKGNTTGAASIQAGLPTSWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G+
Sbjct: 240 SGDYGTTNDIAVIWPEGRAPLVLVTYFTQPEPKAESRRDVLAAAARIVTDGY 291
>gi|254499370|ref|ZP_05112038.1| putative D-alanyl-meso-diaminopimelate endopeptidase [Legionella
drancourtii LLAP12]
gi|254351399|gb|EET10266.1| putative D-alanyl-meso-diaminopimelate endopeptidase [Legionella
drancourtii LLAP12]
Length = 470
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ D TG VI + PAS TKL TA ++K
Sbjct: 30 GVLIKDAQTGEVIYSRNANKLLTPASSTKLFTAAAALYYIKP 71
>gi|197724705|emb|CAP12354.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 49.2 bits (115), Expect = 0.001, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 72/269 (26%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAAFASPQPLEQVTRSESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG IVA
Sbjct: 188 KLLTSHALSARSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILGAL--DRNTRNKVSASL 259
+ ++ + L RN+ A +
Sbjct: 248 NGKAERIVVIYLRDTPATMAERNQQIARI 276
>gi|319948648|ref|ZP_08022771.1| D-alanyl-D-alanine carboxypeptidase [Dietzia cinnamea P4]
gi|319437676|gb|EFV92673.1| D-alanyl-D-alanine carboxypeptidase [Dietzia cinnamea P4]
Length = 452
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
A L I L+ +++D TG V+ E P PAS TKL+TA
Sbjct: 62 AALERILTPLARDPAVGDLTASVVDDATGQVLWEVRPREAKVPASTTKLLTAVAAM 117
>gi|117938018|gb|ABK58097.1| beta-lactamase LAP-1 [Enterobacter cloacae]
Length = 285
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 35/266 (13%), Positives = 71/266 (26%), Gaps = 26/266 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP------------YYTLLDTNTGHVIAENYPD 48
M++ +II + P LS +T +D +G V++ + +
Sbjct: 1 MKKIRLIIISLLAGMCTPALSTPVNVTDTIQSTEDHIKGRVGFTEIDFLSGKVLSSHRRE 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K++ + + + L IT +K+ + ++ MT+
Sbjct: 61 ERFPMMSTFKVLLCGAILVRVDKGLEQLERRITYNKHDLDDYSPLTSQHIADGMTVSELC 120
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
I S N A + ++ E + L TT
Sbjct: 121 NAAITTSDNTAANLLLSTIGGPEGLTHFLRSTGDSYTRLDRHEPSLNEAKPGDERDTTTP 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGFTCASGF 226
+ + + + K + + KTG
Sbjct: 181 AAMAQTLQKLLNGSVLTEKSRKKLISWMQEDKVGGPLFRSVLPAGWMIADKTG------- 233
Query: 227 NIVASAIQGDQSLIAVILGALDRNTR 252
A I +LG + +R
Sbjct: 234 -----AGDHGSRGIVALLGPGGKPSR 254
>gi|288190918|gb|ADC43821.1| extended spectrum beta-lactamase TEM-1 [Klebsiella pneumoniae]
Length = 212
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 2/140 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 25 GYIELDLNSGKILESFRPEERFPXMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 84
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 85 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDR 144
Query: 148 SATHFMNAHGVVQHGHYTTA 167
A + A
Sbjct: 145 WEPELNEAIPNDERDTTMPA 164
>gi|302865639|ref|YP_003834276.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Micromonospora aurantiaca ATCC 27029]
gi|302568498|gb|ADL44700.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Micromonospora aurantiaca ATCC 27029]
Length = 527
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 12 MLSNIFPFLSIAETNKLPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ + I L+ + N ++DT TG + + PAS TKL+T+ L
Sbjct: 39 LNATIDAVLADSRLNGAQAGVVVVDTATGRTLYDRNGTRRLIPASNTKLLTSAAAMELLG 98
Query: 71 EKK 73
Sbjct: 99 PGH 101
>gi|224814396|gb|ACN65418.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 71/269 (26%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L + + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLVAFASPQPLEQVTRSESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG IVA
Sbjct: 188 KLLTSHALSARSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILGAL--DRNTRNKVSASL 259
+ ++ + L RN+ A +
Sbjct: 248 NGKAERIVVIYLRDTPATMAERNQQIARI 276
>gi|25071200|ref|NP_608309.2| beta-lactamase Oxa9 [Klebsiella pneumoniae]
gi|143955309|sp|P0A3M3|BLO9_KLEPN RecName: Full=Beta-lactamase OXA-9; AltName: Full=Oxacillinase;
AltName: Full=Penicillinase; Flags: Precursor
gi|166214909|sp|P0A3M4|BLO9_ENTAE RecName: Full=Beta-lactamase OXA-9; AltName: Full=Oxacillinase;
AltName: Full=Penicillinase; Flags: Precursor
gi|25056131|gb|AAL93143.2|AF479774_7 beta-lactamase Oxa9 [Klebsiella pneumoniae]
gi|25056128|gb|AAA98406.2| Oxa9 [Klebsiella pneumoniae]
gi|27902587|gb|AAO24600.1| Oxa-9 [Enterobacter cloacae]
Length = 274
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 33/246 (13%), Positives = 69/246 (28%), Gaps = 12/246 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYP-DHPWNPASLT 57
M++ L++ + +S P S+A L + D TG+ + E +P S
Sbjct: 1 MKKILLLHMLVFVSATLPISSVASDEVETLKCTIIADAITGNTLYETGECARRVSPCSSF 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KL A + F + T + + D+ + ++
Sbjct: 61 KLPLAIMGFDSGILQSPKSPTWELKPEYNPSPRDRTYKQVYPALWQSDSVVWFSQQLTSR 120
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
E + K E ++ K+ GL ++ + + L +
Sbjct: 121 LGVDRFTEYVKKFEYGNQDVSGDSGKHNGL------TQSWLMSSLTISPKEQIQFLLRFV 174
Query: 178 KTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVGTFLGADGMKTGFTCASGFN--IVASAIQ 234
P + + I + + G G S V A +
Sbjct: 175 AHKLPVSEAAYDMAYATIPQYQAAEGWAVHGKSGSGWLRDNNGKINESRPQGWFVGWAEK 234
Query: 235 GDQSLI 240
+ ++
Sbjct: 235 NGRQVV 240
>gi|25140613|gb|AAN73274.1| extended-spectrum beta-lactamase KLUG-1 [Kluyvera georgiana]
Length = 291
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 69/256 (26%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
+ +++L P + A + L +D + + D
Sbjct: 11 LMTTTCISLLLGSAPLYAQANDVQQKLAALEKSSGGRLGVALIDTADNAQTLY--RADER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L+ + I + + TMTL
Sbjct: 69 FAMCSTSKVMAAAAVLKQSETQKKVLSQKVEIKSSDLINYNPITEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + L +K F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAHLGGPDKVTAFARAIGDNTFRLDRTEPTLNTAIPGDPRDTTTPLA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRNLTLGSALGETQRAQLVTWLKGNTTGAASIQAGLPTSWVVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + LI V
Sbjct: 249 IAVIWPEGRAPLILVT 264
>gi|15805212|ref|NP_293900.1| D-alanyl-D-alanine carboxypeptidase [Deinococcus radiodurans R1]
gi|6457845|gb|AAF09764.1|AE001880_1 D-alanyl-D-alanine carboxypeptidase, putative [Deinococcus
radiodurans R1]
Length = 474
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
+ D NTG V+ PD P PAS KL+TA V +T +T+
Sbjct: 66 LVRDLNTGKVLVALDPDRPLVPASTMKLVTAAAVLYDRGGAGGWWSTELTV 116
>gi|8134349|sp|O69395|BLT2_ECOLX RecName: Full=Beta-lactamase Toho-2; Flags: Precursor
gi|3142149|dbj|BAA28282.1| beta-lactamase [Escherichia coli]
Length = 289
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 37/240 (15%), Positives = 64/240 (26%), Gaps = 10/240 (4%)
Query: 33 LLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+D + V+ D + S +K+M A V + +K +L P+ I
Sbjct: 52 LIDTADNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYN 109
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ TMTL + S N + L + L T
Sbjct: 110 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTE 169
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ TT ++ + + + A
Sbjct: 170 PTLNTAIPGDPRDTTTARAGADVASLRWVMRWAKPSGAVGDVAQRQYDRAAGIRAGLPTS 229
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ G
Sbjct: 230 WTVGDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 289
>gi|6979156|gb|AAF34337.1| beta-lactamase SHV-5 variant [Klebsiella pneumoniae]
Length = 260
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 32/221 (14%), Positives = 57/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 35 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 94
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 95 SEKHLADGMTVGEFCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 154
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A L + + Q+ + + +V
Sbjct: 155 LNEALPGDARDTTTPASMAGTLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 214
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 215 WFIADKTG------------ASKRGARGIVALLGPNNKAER 243
>gi|312132166|ref|YP_003999506.1| beta-lactamase [Leadbetterella byssophila DSM 17132]
gi|311908712|gb|ADQ19153.1| beta-lactamase [Leadbetterella byssophila DSM 17132]
Length = 287
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 29/232 (12%), Positives = 69/232 (29%), Gaps = 14/232 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
L+D TG + + D P+ S+ K A + + K L I+I
Sbjct: 41 LIDLKTGEI-KQVNGDDPFPLQSVFKFHIAAKALEQVDKGKWQLRDQISIEPGEIYTDLY 99
Query: 93 NSTFKKG----STMTLDNALKLLIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNLG 146
+ + S+M LD+ + ++ S N + T ++++ + + +
Sbjct: 100 SPIRDEIGTNLSSMRLDSLIYYMVSLSDNSACDILLRHLGGPSTVNEYIKEIGIKNTKIE 159
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
++ + T L ++ + + L N
Sbjct: 160 VNELTMQSRWEEQYRNISTPLSVAETLKKFYLREYLSGDMHDFLWALMENSPTGANRIRK 219
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQ-------GDQSLIAVILGALDRNT 251
KTG + + I + ++ + V+ + + +
Sbjct: 220 GLPEGAVLAHKTGTSGRNVDGISGATNDAGIIILPDGRAYVLVVFVSDSKES 271
>gi|399121|sp|P30897|BLAC_PROMI RecName: Full=Beta-lactamase; AltName: Full=Carbenicillinase;
Flags: Precursor
gi|216841|dbj|BAA02496.1| beta-lactamase precursor [Proteus mirabilis]
Length = 298
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 36/292 (12%), Positives = 80/292 (27%), Gaps = 19/292 (6%)
Query: 5 LVIIAMAMLSNIF-----PFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTK 58
+ + +++ +N + D TG E+ + + +S K
Sbjct: 17 FLCLTLSLNANATDSVLEAVTNAETELGARIGLAAHDLETGKR-WEHKSNERFPLSSTFK 75
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST-MTLDNALKLLIVKSAN 117
+ V + K + + S++ + G M+L + + S N
Sbjct: 76 TLACANVLQRVDLGKERIDRVVRFSESNLVTYSPVTEKHVGKKGMSLAELCQATLSTSDN 135
Query: 118 DIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
A I +++ + KF++ + + + L A + T + L
Sbjct: 136 SAANFILQAIGGPKALTKFLRSIGDDTTRLDRWEPELNEAVPGDKRDTTTPIAMVTTLEK 195
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ + Q++ + +TG I A
Sbjct: 196 LLIDETLSIKSRQQLESWLKGNEVGDALFRKGVPSDWIVADRTGAGGYGSRAITAVMWPP 255
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
++ I L + + + N K I K +N N
Sbjct: 256 NRKPIVAALYITETDASFEE---------RNAVIAKIGEQIAKTVLMENSRN 298
>gi|254521343|ref|ZP_05133398.1| beta-lactamase [Stenotrophomonas sp. SKA14]
gi|219718934|gb|EED37459.1| beta-lactamase [Stenotrophomonas sp. SKA14]
Length = 304
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 58/203 (28%), Gaps = 2/203 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+LDT +G I + D + S K M V S + L T + I++
Sbjct: 62 VLDTGSGRSIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEQDLLSYAP 121
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + + F++ ++ +
Sbjct: 122 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLDVVGGPSALTAFLRGQGDSVTRNDRNEP 181
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A L+ + Q Q I + A
Sbjct: 182 DVNLFAKGDPRDTTSPAAMATSLARFAVGNGLQPASRQQFADWLIDNQTGDACLRAGLGK 241
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 242 RWRVGDKTGSNGDDTRNDIAVLW 264
>gi|159028242|emb|CAO88052.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 393
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 30/278 (10%), Positives = 77/278 (27%), Gaps = 14/278 (5%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
++ + + +D + G A D + AS K+ F +
Sbjct: 110 SLNQKLQALTVKYPKLQA-GALFIDLDNGA-YANFRGDTIFAAASTIKIPILVAFFEDVD 167
Query: 71 EKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K L + +K+ T T + V S N +
Sbjct: 168 AGKIRLDETLVATKDVLASGSGDMQYLGLNKTYTALETATKMNVISDNTATNMLI----- 222
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+ +N + GL++T N ++ + T+ RD+ + ++ +
Sbjct: 223 KRMGGKKALNQRFQAWGLTSTVINNPLPDLEGTNTTSPRDLVTILGKVNQGELLSLRSRD 282
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
++ + KTG + + + + + ++ + R
Sbjct: 283 RLLNIMQETRTRTLLPQGIEKSADIAHKTGDIGSMLADAGIIDMPNGKRYLGAVM--VKR 340
Query: 250 NTRNKVSASLLSM----GFYNKTDRKKINYIIKDFYQQ 283
+ + +L+ + + + + Q
Sbjct: 341 PHNDSNARTLIQQISRTAYQHFKWYQTQPAVKPQPVAQ 378
>gi|326378235|gb|ADZ57219.1| extended-spectrum beta-lactamase TEM-63 [Vibrio cholerae O1 biovar
El Tor]
Length = 256
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 43/123 (34%), Gaps = 2/123 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 27 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVK 86
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
+ MT+ I S N A + ++ ++ F+ +M + L
Sbjct: 87 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDS 146
Query: 148 SAT 150
Sbjct: 147 WEP 149
>gi|238898184|ref|YP_002923865.1| beta-lactamase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229465943|gb|ACQ67717.1| beta-lactamase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 286
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 42/265 (15%), Positives = 68/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLP-YYTLLDTNTGHVIAENYPDH 49
M F + + + P L+ T Y LD G ++ P+
Sbjct: 1 MESFRLTLISIFAAFSLPALAHQATIDKVKESERQLNARVGYVELDLANGQILNTYRPEE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V S + L I ++ + MT+
Sbjct: 61 RFPMMSTFKVLLCGAVLSRVDAGLEQLDRRIKYRQSDLVKYSPMTKQHLADGMTVAELCS 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + K F+Q + L T A + T
Sbjct: 121 AAITVSDNTAANLLLSTIGGPKGLTSFLQKTGDQVTRLDRWETELNQALPGDERDTTTPK 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
L + Q++ + K +V KTG
Sbjct: 181 IMAQTLHNLLTGKILSVKSRQQLQTWMVMNKVGGPLLRSVLPANWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A I LGA + +R
Sbjct: 233 ----AGNHGSRGIIAALGADGKPSR 253
>gi|125634074|gb|ABN48311.1| beta-lactamase CTX-M-56 [Escherichia coli]
Length = 291
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A +R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAENRRDILAAAAKIVTHGF 291
>gi|322368439|ref|ZP_08043008.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Haladaptatus paucihalophilus DX253]
gi|320552455|gb|EFW94100.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Haladaptatus paucihalophilus DX253]
Length = 426
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 11/67 (16%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNT-----------GHVIAENYPDHPWNPASLTKLMT 61
+ + + P+ +LD+++ G V+A PD P PAS TKL+T
Sbjct: 1 MVSGMDADASTPDADAPHTDILDSDSFVTSVLARERGGSVLASRNPDVPLPPASNTKLLT 60
Query: 62 AYVVFSF 68
A +
Sbjct: 61 AALSLHH 67
>gi|309779211|ref|ZP_07673974.1| class D beta-lactamase Oxa [Ralstonia sp. 5_7_47FAA]
gi|308922015|gb|EFP67649.1| class D beta-lactamase Oxa [Ralstonia sp. 5_7_47FAA]
Length = 275
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 28/211 (13%), Positives = 55/211 (26%), Gaps = 2/211 (0%)
Query: 32 TLLDTNTGH-VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ D TG V+ E D PAS KL A + F K +
Sbjct: 29 IVADAATGKAVLHEGKCDERVTPASTFKLALAVMGFDHGFLKDEHTPVEHFKRGDPDWGG 88
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ + + + + A + K + + KN G+ +
Sbjct: 89 DAWHQPIDPALWLKYSVVWYSQRVTHAMGAQTFQAYVRKLGYGNMDVSGDPGKNNGMDRS 148
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
++ + R + + + + G G
Sbjct: 149 WITSSLKISPEEQVGLMRRIVNRQLSVSARTYEMVDRTVQTWQVPGGWAVQGKTGTAGPA 208
Query: 211 LGADGMKTGFTCASGFN-IVASAIQGDQSLI 240
G + A + V A +GD++ +
Sbjct: 209 PGNTSPDGTWDQAHAYGWFVGWARKGDKTYV 239
>gi|119509166|ref|ZP_01628317.1| Penicillin-binding protein, transpeptidase [Nodularia spumigena
CCY9414]
gi|119466332|gb|EAW47218.1| Penicillin-binding protein, transpeptidase [Nodularia spumigena
CCY9414]
Length = 501
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 44/226 (19%), Positives = 78/226 (34%), Gaps = 7/226 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
L+IA N P L+D TG + ++ AS K+ F + K L
Sbjct: 217 LAIASPNLRPGVFLVDLETGG-YVDVNSSATFSAASTIKVPILIAFFQDVDAGKVRLDEM 275
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ + K N +++ T L + S+++ A + + + +N
Sbjct: 276 LRMEKEMVAGGSGNLQYQQVGTQYSALELATQMSASSDNTATNMLIARLGGMEA----LN 331
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
GLSAT N + + ++ RD+ L + M + L+I +
Sbjct: 332 QRFLRWGLSATAIRNPLPDLPGTNTSSPRDLGNLLAMVNQGNLVSMRSRDL-ILDIMRRT 390
Query: 200 YPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL 244
N G GA KTG ++ I + IA ++
Sbjct: 391 ERNHLLPSGLGAGARVYHKTGDIATMLGDVGLIDIPTGKRYIAAVM 436
>gi|325106533|ref|YP_004276187.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Pedobacter saltans DSM 12145]
gi|324975381|gb|ADY54365.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Pedobacter saltans DSM 12145]
Length = 458
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY---------------TLLDTNTGHVIAEN 45
M++ I+ ++ + N SI + K Y + D NT VI
Sbjct: 1 MKKIFAILLISAIGNSSFSQSITDKLKTAYAAFSKDAQLKYATSSLIVTDRNTNKVIFAQ 60
Query: 46 YPDHPWNPASLTKLMTAYVVF 66
+ PAS K +T+
Sbjct: 61 NENVGLAPASTLKTVTSATAL 81
>gi|5305924|gb|AAD41880.1|AF153050_1 putative carboxypeptidase [Enterococcus faecium]
Length = 111
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-----WAVGTFLGAD 214
Y A + K + Y N+N +
Sbjct: 1 DTTAYDLAIIAKACLENPIISEIVASNTSYEKWPNGREVTYNNSNELLDPNSPYYRPEVI 60
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
G+KTG + G +V++A+ ++ I V +G+ + +R + S +L
Sbjct: 61 GLKTGTSSLGGACVVSAAVIDGETYICVAMGS-TKESRFQDSVDILD 106
>gi|75763779|ref|ZP_00743442.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74488736|gb|EAO52289.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 115
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGF 264
F G DG++T F+ ++ V++A D LI+VIL A + N + LL GF
Sbjct: 1 MKTLNFKGVDGLQTSFSTNGNYSFVSTAKLEDTRLISVILDADEENISFIETKKLLQYGF 60
Query: 265 Y 265
Sbjct: 61 D 61
>gi|160948437|emb|CAJ47128.2| beta-lactamase [Klebsiella pneumoniae]
Length = 285
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 38/264 (14%), Positives = 69/264 (26%), Gaps = 24/264 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDHP 50
MR L II++ + S ++ +D +G + D
Sbjct: 1 MRIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADER 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K++ V + + L I + S MT+
Sbjct: 61 FPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAA 120
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
I S N A + F++ + + L T A T A
Sbjct: 121 AITMSDNSAANLLLATVGGPVGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPAS 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
A L + + Q+ + + +V +TG
Sbjct: 181 MAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADRTG--------- 231
Query: 229 VASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 232 ---AGERGARGIVALLGPNNKAER 252
>gi|85062589|gb|ABC69156.1| CTX-M type extended-spectrum beta-lactamase [Escherichia coli]
Length = 291
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 72/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAMQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|291586289|gb|ADE18897.1| TEM-1 beta-lactamase [Salmonella enterica subsp. enterica serovar
Heidelberg]
Length = 138
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 11/131 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K++ V S + + L I S+N + MT+ I
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELCSAAI 125
Query: 113 VKSANDIAVAI 123
S N A +
Sbjct: 126 TMSDNTAANLL 136
>gi|269795424|ref|YP_003314879.1| penicillin-binding protein [Sanguibacter keddieii DSM 10542]
gi|269097609|gb|ACZ22045.1| penicillin-binding protein, beta-lactamase class C [Sanguibacter
keddieii DSM 10542]
Length = 271
Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAEN-YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ++G V+A + D + AS++KL+TAY ++E L P
Sbjct: 11 PVENVGTAVV--ASSGEVLASHGDLDRVFPLASVSKLLTAYAALVAVEEGAVGLDDP 65
>gi|114705368|ref|ZP_01438276.1| Beta-lactamase class A [Fulvimarina pelagi HTCC2506]
gi|114540153|gb|EAU43273.1| Beta-lactamase class A [Fulvimarina pelagi HTCC2506]
Length = 290
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 46/145 (31%), Gaps = 12/145 (8%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDHPWNPA 54
+ ++A++ + A +LDT TG E+ D + A
Sbjct: 12 IALVALSTGIACVQVGARAPDEVAAKLEDRLETRVGVFVLDTGTGET-WEHRADERFPMA 70
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S K + + L + + + + + GS ++L A + +
Sbjct: 71 STFKSFACSALLDKAAKGSLALDDTVAVEVSDLVTYSPVTEKRVGSRLSLREACEATLRT 130
Query: 115 SANDIAVAIAESLCKTEKKFVQHMN 139
S N A + E+L + M
Sbjct: 131 SDNTAANIVLEAL-GGPQAVTDFMR 154
>gi|160948459|emb|CAJ47137.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 67/265 (25%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYVRLCIISLLATLPLAVHTSPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|254385669|ref|ZP_05000992.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
gi|194344537|gb|EDX25503.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces sp. Mg1]
Length = 476
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
A+ + P + L +++DT TG V+ E P P PAS K+
Sbjct: 90 ALAGALRPLFADPALGSLRSASVIDTATGRVLYEAKPREPMTPASTVKI 138
>gi|73665394|gb|AAZ79404.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 72/269 (26%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPPPLEQITRSESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG IVA
Sbjct: 188 KLLTSHALSDRSQQQLLQWMLDDQVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILGAL--DRNTRNKVSASL 259
+ ++ + L RN+ A +
Sbjct: 248 NGKAERIVVIYLRDTPATMAERNQQIAKI 276
>gi|282192946|gb|ADA81876.1| extended-spectrum beta-lactamase [Escherichia coli]
gi|323709077|gb|ADY02555.1| beta-lactamase CTX-M-104 [Escherichia coli]
Length = 291
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 41/283 (14%), Positives = 73/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A +R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAENRRDVLASAARIIAEGL 291
>gi|270156653|ref|ZP_06185310.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Legionella longbeachae D-4968]
gi|289164898|ref|YP_003455036.1| D-Ala-D-Ala carboxypeptidase [Legionella longbeachae NSW150]
gi|269988678|gb|EEZ94932.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Legionella longbeachae D-4968]
gi|288858071|emb|CBJ11931.1| putative D-Ala-D-Ala carboxypeptidase [Legionella longbeachae
NSW150]
Length = 469
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 5 LVIIAMAMLSNIFPFLSIAETN----------KLPYYTLLDTNTGHVIAENYPDHPWNPA 54
L +A + + ++AE + D TG VI D +PA
Sbjct: 7 LCFLAAILFNQAANSQTLAEKIDEIIKQQLPHATIGVFVKDAQTGKVIYRRNADKLLSPA 66
Query: 55 SLTKLMTAYVVFSFLKE 71
S KL TA LK
Sbjct: 67 SSMKLFTAAAALYQLKP 83
>gi|226432219|gb|ACO55655.1| TER-1 beta-lactamase [Raoultella terrigena]
Length = 284
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 67/232 (28%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G ++A PD + S K+ V + + + L + +
Sbjct: 45 LDLASGRLLASYRPDERFPMMSTFKVPLCAAVLARVDAGEEKLDRRVRYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ MT+ I S N A + + + F++ + + L T
Sbjct: 105 TEKHLADGMTVAELCAAAITLSDNTAANLLLASVGGTQGLTAFLRRSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ + K +
Sbjct: 165 LNEALPGDARDTTTPQAMAKTLHNLLTGSVLSAASRQQLRSWMVDDKVAGPLLRSTLPHG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
KTG I+A+ Q ++ + L G + RN+ A +
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGQPARIVIIYLTGTEASMDERNRQIAEI 276
>gi|56463229|gb|AAV91756.1| beta-lactamase SHV [Escherichia coli]
Length = 248
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 20 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDQQLERKIHYRQQDLVDYSPV 79
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 80 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 139
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 140 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 199
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 200 WFIADKTG------------ASKRGARGIVALLGPNNKAER 228
>gi|56463227|gb|AAV91755.1| beta-lactamase SHV [Escherichia coli]
gi|56463231|gb|AAV91757.1| beta-lactamase SHV [Escherichia coli]
Length = 248
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 20 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDQQLERKIHYRQQDLVDYSPV 79
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 80 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 139
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 140 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 199
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 200 WFIADKTG------------ASKRGARGIVALLGPNNKAER 228
>gi|82655080|emb|CAJ19608.1| OKP-A beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 71/269 (26%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LIPLIAALPLAVFASPPPLEQITLSESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG IVA
Sbjct: 188 KLLTSHALSDRSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILGAL--DRNTRNKVSASL 259
+ ++ + L RN+ A +
Sbjct: 248 NGKAERIVMIYLRDTPATMAERNQQIAKI 276
>gi|213421722|ref|ZP_03354788.1| D-alanyl-D-alanine endopeptidase [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 151
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASA 232
+ + + NTN V KTGFT A+G +V
Sbjct: 23 QYPLIGQLSTTREDMATFSHPAYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRT 82
Query: 233 IQGDQSLIAVILGALDRNTRNKVSASLLSM 262
+ ++ + V++ A + T ++ L +
Sbjct: 83 VINNKPVALVVMDAFGKYTHFADASRLRTW 112
>gi|298369493|ref|ZP_06980810.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria sp. oral taxon 014 str. F0314]
gi|298282050|gb|EFI23538.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria sp. oral taxon 014 str. F0314]
Length = 470
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D +G +I E+ D NPAS KL+TA+ F
Sbjct: 32 SVYVKDLQSGRIIEEHRADESMNPASTMKLVTAFAAFRA 70
>gi|157838542|gb|ABV82950.1| extended spectrum beta-lactamase SHV-7 [Escherichia coli]
Length = 265
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 26 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 85
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 86 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 145
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 146 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 205
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 206 WFIADKTG------------ASKRGARGIVALLGPNNKAER 234
>gi|157838540|gb|ABV82949.1| extended spectrum beta-lactamase SHV-12 [Enterobacter cloacae]
Length = 269
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 28 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 87
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 88 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 147
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 148 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 207
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 208 WFIADKTG------------ASKRGARGIVALLGPNNKAER 236
>gi|94502880|gb|ABF29671.1| beta-lactamase [Klebsiella pneumoniae]
Length = 258
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 93 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 213 WFIADKTG------------ASKRGARGIVALLGPNNKAER 241
>gi|90403951|gb|ABD93869.1| SHV-12 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 277
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 35 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 94
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 95 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 154
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 155 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 214
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 215 WFIADKTG------------ASKRGARGIVALLGPNNKAER 243
>gi|90403945|gb|ABD93866.1| SHV-12 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 276
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 36 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 95
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 96 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 155
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 156 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 215
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 216 WFIADKTG------------ASKRGARGIVALLGPNNKAER 244
>gi|56463225|gb|AAV91754.1| beta-lactamase SHV [Escherichia coli]
Length = 248
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 20 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 79
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 80 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 139
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 140 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 199
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 200 WFIADKTG------------ASKRGARGIVALLGPNNKAER 228
>gi|56463221|gb|AAV91752.1| beta-lactamase SHV [Escherichia coli]
gi|56463241|gb|AAV91762.1| beta-lactamase SHV [Escherichia coli]
Length = 248
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 20 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 79
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 80 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 139
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 140 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 199
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 200 WFIADKTG------------ASKRGARGIVALLGPNNKAER 228
>gi|56463223|gb|AAV91753.1| beta-lactamase SHV [Escherichia coli]
gi|56463233|gb|AAV91758.1| beta-lactamase SHV [Escherichia coli]
Length = 248
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 20 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 79
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 80 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 139
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 140 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 199
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 200 WFIADKTG------------ASKRGARGIVALLGPNNKAER 228
>gi|31096351|gb|AAP43508.1| CTX-M-30 beta-lactamase [Citrobacter freundii]
Length = 291
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 73/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVII--AMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ A+ +L P + + L++ + ++
Sbjct: 6 LRQFTLMATAAVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|127512890|ref|YP_001094087.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella loihica PV-4]
gi|126638185|gb|ABO23828.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella loihica PV-4]
Length = 543
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
IA + D + ++ ++ D PAS KL+TA
Sbjct: 79 LSVIAPPHSQLSIFAQDLSNNEILYQHNADTLVLPASTQKLLTAVAAMR 127
>gi|317471251|ref|ZP_07930615.1| penicillin-binding protein [Anaerostipes sp. 3_2_56FAA]
gi|316901259|gb|EFV23209.1| penicillin-binding protein [Anaerostipes sp. 3_2_56FAA]
Length = 147
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 229 VASAIQGDQSLIAVILGA---LDRNTRNKVSASLLSMGFYNKTDRKKI---NYIIKDFYQ 282
+ + + ++IAV+L + + +L+ G N + K I + + +
Sbjct: 1 MGAVKKNGMTMIAVVLACGWPPHKTYKWSDVRTLVDYGAKNYSYHKIIPDYSKLTDLYVN 60
Query: 283 QNLSNEVPNISE--EVCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNKITKK 336
+ ++V ++ + K+ + + + K + E++ ++ + +
Sbjct: 61 GGMEHKVSIGAKGGGMTLLLKKGEKVDIKCQIPKSLNAPVKKKEQVGKIEYVLNGR 116
>gi|134096833|ref|YP_001102494.1| putative alanine rich lipoprotein LppW [Saccharopolyspora
erythraea NRRL 2338]
gi|291005122|ref|ZP_06563095.1| putative alanine rich lipoprotein LppW [Saccharopolyspora
erythraea NRRL 2338]
gi|133909456|emb|CAL99568.1| putative conserved alanine rich lipoprotein LppW
[Saccharopolyspora erythraea NRRL 2338]
Length = 236
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY-VVFSFLKEKKAMLTTP 79
Y ++D +G V++E P + AS+ K++ A +
Sbjct: 5 SAGYLVVDAASGRVLSERDPRRRFRSASIVKILIALDHLLELGPGGDIPDDDR 57
>gi|11321258|gb|AAG34108.1| cefotaxime-hydrolyzing beta-lactamase [Klebsiella pneumoniae]
gi|31096326|gb|AAP43783.1| beta-lactamase CTX-M-12 [Klebsiella pneumoniae]
gi|47087856|gb|AAT10373.1| extended spectrum beta-lactamase CTX-M12 [Pantoea agglomerans]
gi|110084283|gb|ABG49386.1| extended-spectrum beta-lactamase CTX-M-12 [Escherichia coli]
gi|110084286|gb|ABG49388.1| extended-spectrum beta-lactamase CTX-M-12 [Escherichia coli]
gi|110084289|gb|ABG49390.1| extended-spectrum beta-lactamase CTX-M-12 [Escherichia coli]
gi|110811595|gb|ABG91579.1| extended-spectrum beta-lactamase CTX-M-12 [Klebsiella pneumoniae]
Length = 291
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 74/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVII--AMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ A+ +L P + + L++ + ++
Sbjct: 6 LRQFTLMATAAVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + ++L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPSLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|94502905|gb|ABF29685.1| beta-lactamase [Klebsiella pneumoniae]
Length = 282
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 67/258 (25%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ ++A L+ + + + +D +G + D + S
Sbjct: 7 IISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMST 66
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 67 FKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 126
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + F++ + + L T A T A A L
Sbjct: 127 NSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLR 186
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + +V KTG A +
Sbjct: 187 KLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------------AGE 234
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG ++ R
Sbjct: 235 RGARGIVALLGPNNKAER 252
>gi|94502828|gb|ABF29643.1| beta-lactamase [Escherichia coli]
gi|94502873|gb|ABF29667.1| beta-lactamase [Klebsiella pneumoniae]
Length = 272
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 67/258 (25%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ ++A L+ + + + +D +G + D + S
Sbjct: 6 IISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMST 65
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 66 FKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 125
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + F++ + + L T A T A A L
Sbjct: 126 NSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLR 185
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + +V KTG A +
Sbjct: 186 KLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------------AGE 233
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG ++ R
Sbjct: 234 RGARGIVALLGPNNKAER 251
>gi|8101044|gb|AAF72531.1|AF252623_1 beta-lactamase CTX-M-13 [Klebsiella pneumoniae]
Length = 291
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 42/283 (14%), Positives = 73/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LDT-NTGHVIAENYPDHP 50
F + +L P + + L +DT + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTKDNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|189009194|ref|YP_001928076.1| OXA-9 [Klebsiella pneumoniae]
gi|189009197|ref|YP_001928079.1| OXA-9 [Klebsiella pneumoniae]
gi|209901186|ref|YP_002286967.1| beta-lactamase [Klebsiella pneumoniae]
gi|332668530|ref|YP_004455306.1| oxacillinase-carbenicillinase [Enterobacter sp. W001]
gi|4539651|gb|AAD22145.1|AF034958_4 oxacillinase [Enterobacter aerogenes]
gi|76786451|gb|ABA54978.1| OXA-9 [Pseudomonas putida]
gi|171850735|gb|ACB55474.1| OXA-9 [Klebsiella pneumoniae]
gi|171850738|gb|ACB55477.1| OXA-9 [Klebsiella pneumoniae]
gi|209574137|gb|ACI63025.1| beta-lactamase [Klebsiella pneumoniae]
gi|324009187|gb|EGB78406.1| putative class D beta-lactamase Oxa [Escherichia coli MS 57-2]
gi|332015346|gb|AED99558.1| oxacillinase-carbenicillinase [Enterobacter sp. W001]
Length = 279
Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats.
Identities = 33/246 (13%), Positives = 69/246 (28%), Gaps = 12/246 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYP-DHPWNPASLT 57
M++ L++ + +S P S+A L + D TG+ + E +P S
Sbjct: 6 MKKILLLHMLVFVSATLPISSVASDEVETLKCTIIADAITGNTLYETGECARRVSPCSSF 65
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KL A + F + T + + D+ + ++
Sbjct: 66 KLPLAIMGFDSGILQSPKSPTWELKPEYNPSPRDRTYKQVYPALWQSDSVVWFSQQLTSR 125
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
E + K E ++ K+ GL ++ + + L +
Sbjct: 126 LGVDRFTEYVKKFEYGNQDVSGDSGKHNGL------TQSWLMSSLTISPKEQIQFLLRFV 179
Query: 178 KTDFPQYMHYFQIKGLEIKGKK-YPNTNWAVGTFLGADGMKTGFTCASGFN--IVASAIQ 234
P + + I + + G G S V A +
Sbjct: 180 AHKLPVSEAAYDMAYATIPQYQAAEGWAVHGKSGSGWLRDNNGKINESRPQGWFVGWAEK 239
Query: 235 GDQSLI 240
+ ++
Sbjct: 240 NGRQVV 245
>gi|329897122|ref|ZP_08271866.1| Beta-lactamase [gamma proteobacterium IMCC3088]
gi|328921414|gb|EGG28804.1| Beta-lactamase [gamma proteobacterium IMCC3088]
Length = 332
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 25/161 (15%), Positives = 51/161 (31%), Gaps = 23/161 (14%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN-----KLPYYTLL----------------DTNTGH 40
R +L+ +A+ ++ S + L D TG
Sbjct: 6 RFWLISLALVVMLASAKGNSQPQQVGSAVAPAKVALALHTVTSGLVGVAGVAAQDMTTGA 65
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100
I D P+ AS K+ A + + + + LT + I + Y +
Sbjct: 66 QIF-LNGDEPFPMASTYKIAIAMTLLAKVDHGELNLTDMVDIDDSEWVYSQVIAANFIHQ 124
Query: 101 TMTLDNAL-KLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
++L A +++ +++ A I L Q++
Sbjct: 125 GVSLSIANLLEVMITQSDNTATDICLRLAGGPSAVNQYLGQ 165
>gi|295135625|ref|YP_003586301.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine
endopeptidase [Zunongwangia profunda SM-A87]
gi|294983640|gb|ADF54105.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine
endopeptidase [Zunongwangia profunda SM-A87]
Length = 436
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 12/79 (15%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----LPYY-------TLLDTNTGHVIAENYPD 48
++ L+ + +++ L + P + + D + ++ + +
Sbjct: 3 IKIKLIFLLLSISCLSCASLKNTKNINQIFDHSPAFKQGFTGLVIYDPGSNKILFDKNGN 62
Query: 49 HPWNPASLTKLMTAYVVFS 67
+ PAS TKL T Y
Sbjct: 63 KYFTPASNTKLFTFYTALK 81
>gi|1174372|emb|CAA54738.1| beta-lactamase [Citrobacter koseri]
Length = 294
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 63/238 (26%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K M A V + + +L + I K +
Sbjct: 59 ADRSQILY--RGDERFAMCSTSKTMVAAAVLKQSETQHDILQQKMVIKKADLTNWNPVTE 116
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNLGLSATHFM 153
MTL + S N + E F + + +T+ L
Sbjct: 117 KYVDKEMTLAELSAATLQYSDNTAMNKLLEHLGGTSNVTAFARSIGDTTFRLDRKEPELN 176
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + + L D Q+ + A
Sbjct: 177 TAIPGDERDTTSPLAMAKSLHKLTLGDALAGAQRAQLVEWLKGNTTGGQSIRAGLPEGWV 236
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A D+ LI V A R +A +++ G
Sbjct: 237 VGDKTGAGDYGTTNDIAVIWPEDRAPLILVTYFTQPQQDAKGRKDILAAAAKIVTEGL 294
>gi|308233850|ref|ZP_07664587.1| beta-lactamase [Atopobium vaginae DSM 15829]
gi|328943558|ref|ZP_08241023.1| hypothetical protein HMPREF0091_10248 [Atopobium vaginae DSM 15829]
gi|327491527|gb|EGF23301.1| hypothetical protein HMPREF0091_10248 [Atopobium vaginae DSM 15829]
Length = 382
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 75/248 (30%), Gaps = 15/248 (6%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++D + G+ D + AS+ KL + + +T+
Sbjct: 143 PYGSSVSVCIIDASNGN-YCHVNSDKAFVSASMIKLAVLCEYMHAVDNGQLDPADRVTLK 201
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ ++ + D + +I+ S N + L +N +
Sbjct: 202 NMKVVGGTGLIQTERHASYSYDELCRYMIMYSDNTATNVLINKL------GQDAINERVQ 255
Query: 144 NLGLSATHFMNAHGV--VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
LG T ++ +ARD A + ++ + K LE K+
Sbjct: 256 ALGCKNTSLNRQLMALNTNTENWISARDAATILYKF-KNGTAASSTICAKALEYLSKQTD 314
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL---GALDRNTRNKVSAS 258
N A G GA KTG + + G + V L GA + N K A
Sbjct: 315 NEGMAEGISSGAFAHKTGSLRSMRHDGGIVL--GKHPYVIVALCDIGAGNANRLMKEIAQ 372
Query: 259 LLSMGFYN 266
F
Sbjct: 373 KTDAYFSQ 380
>gi|62738242|pdb|1WE4|A Chain A, Crystal Structure Of Class A Beta-Lactamase Toho-1 G238c
Mutant
Length = 262
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 36/238 (15%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 27 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 84
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 85 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 144
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 145 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 204
Query: 214 DGMKTG-FTCASGFNIVASAIQGDQSLIAVILGA--LDRNTRNKV----SASLLSMGF 264
G KTG + +I + L+ V + R + +A +++ GF
Sbjct: 205 VGDKTGSCDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAERRRDILAAAAKIVTHGF 262
>gi|76799308|ref|ZP_00781473.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21]
gi|76585335|gb|EAO61928.1| DD-carboxypeptidase [Streptococcus agalactiae 18RS21]
Length = 199
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF--------- 210
+ TTARD++IL++ +P ++Y + ++ + +
Sbjct: 1 NATNVTTARDLSILTYHFLKKYPDILNYTKYPEVKAMVGTPYEETFTTYNYSTPGAKFGL 60
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------RNKVSASLLSMGF 264
G DG+KTG + ++ FN + +A + + LI V+LG D + R+ +L+ GF
Sbjct: 61 EGVDGLKTGSSPSAAFNALVTAKRQNTRLITVVLGVGDWSDQDGEYYRHPFVNALVEKGF 120
Query: 265 YNKTDRKKINYIIKDF 280
+ + ++K
Sbjct: 121 KDAKNISSKTPVLKAV 136
>gi|288872164|dbj|BAI70508.1| beta-lactamase [Escherichia coli]
Length = 288
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 69/256 (26%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
+ +++L P + A + L +D + + D
Sbjct: 11 LMTTACISLLLGSAPLYAQANDVQQKLAALEKSSGGRLGVALIDTADNAQTLY--RADER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L+ + I + + TMTL
Sbjct: 69 FAMCSTSKVMAAAAVLKQSETQKKVLSQKVEIKSSDLINYNPITEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + L +K F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAHLGGPDKVTAFARAIGDNTFRLDRTEPTLNTAIPGDPRDTTTPLA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRNLTLGSALGETQRAQLVTWLKGNTTGAASIQAGLPTSWVVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + LI V
Sbjct: 249 IAVIWPEGRAPLILVT 264
>gi|9739248|gb|AAF93177.1| cefotaxime-hydrolyzing beta-lactamase [Klebsiella pneumoniae]
Length = 282
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAGLERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSPA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|82655068|emb|CAJ19602.1| OKP-A beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 71/269 (26%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPQPLEQITLSESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDERLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG IVA
Sbjct: 188 KLLTSHALSDRSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILGAL--DRNTRNKVSASL 259
+ ++ + L RN+ A +
Sbjct: 248 NGKAERIVVIYLRDTPATMAERNQQIARI 276
>gi|288558435|dbj|BAI68282.1| CTX-M 14 extended spectrum beta lactamase [Klebsiella pneumoniae
subsp. pneumoniae]
Length = 277
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 4 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 61
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 62 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 121
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 122 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 181
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 182 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 241
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 242 IAVIWPQGRAPLVLVT 257
>gi|238864042|gb|ACR66297.1| beta-lactamase CTX-M14 [Escherichia coli]
gi|238864044|gb|ACR66298.1| beta-lactamase CTX-M14 [Escherichia coli]
gi|238864046|gb|ACR66299.1| beta-lactamase CTX-M14 [Escherichia coli]
gi|238864048|gb|ACR66300.1| beta-lactamase CTX-M14b [Escherichia coli]
gi|238864050|gb|ACR66301.1| beta-lactamase CTX-M14b [Escherichia coli]
Length = 276
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 4 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 61
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 62 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 121
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 122 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 181
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 182 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 241
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 242 IAVIWPQGRAPLVLVT 257
>gi|66932801|gb|AAY58238.1| extended-spectrum beta-lactamase CTX-M-14 [Escherichia coli]
Length = 283
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 249 IAVIWPQGRAPLVLVT 264
>gi|66932803|gb|AAY58239.1| extended-spectrum beta-lactamase CTX-M-24 [Escherichia coli]
Length = 283
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 249 IAVIWPQGRAPLVLVT 264
>gi|58119477|gb|AAW65395.1| extended-spectrum beta-lactamase CTX-M-14 [Proteus mirabilis]
Length = 279
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 249 IAVIWPQGRAPLVLVT 264
>gi|18656798|gb|AAL77984.1| extended-spectrum beta-lactamase CTX-M-14 [Serratia liquefaciens]
Length = 264
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 6 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 63
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 64 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 123
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 124 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 183
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 184 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 243
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 244 IAVIWPQGRAPLVLVT 259
>gi|215528084|ref|YP_002332867.1| beta-lactamase CTX-M-24 [Klebsiella pneumoniae]
gi|283826843|ref|YP_003377714.1| extended-spectrum beta-lactamase CTX-M-24 [Shigella sonnei]
gi|23953863|gb|AAN38836.1| beta-lactamase CTX-M-24 [Klebsiella pneumoniae]
gi|68673193|emb|CAJ00132.1| CTX-M-24 beta-lactamase [Escherichia coli]
gi|85062591|gb|ABC69157.1| CTX-M type extended-spectrum beta-lactamase [Klebsiella pneumoniae]
gi|125634072|gb|ABN48310.1| beta-lactamase CTX-M-24 [Escherichia coli]
gi|147712678|gb|ABQ45876.1| extended-spectrum beta-lactamase CTX-M-24 [Proteus mirabilis]
gi|165928604|gb|ABY74372.1| beta-lactamase CTX-M-24 [Klebsiella pneumoniae]
gi|197215895|gb|ACH53184.1| CTX-M-24 beta-lactamase [Escherichia coli]
gi|214011885|gb|ACJ61681.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
gi|221149284|gb|ACM04465.1| CTX-M-24 extended-spectrum beta-lactamase [Escherichia coli]
gi|221149287|gb|ACM04466.1| CTX-M-24 extended-spectrum beta-lactamase [Escherichia coli]
gi|259017812|gb|ACV89492.1| CTX-M-24 extended-spectrum beta-lactamase [Escherichia coli]
gi|259017814|gb|ACV89493.1| CTX-M-24 extended-spectrum beta-lactamase [Escherichia coli]
gi|282192950|gb|ADA81878.1| extended-spectrum beta-lactamase [Escherichia coli]
gi|282192952|gb|ADA81879.1| extended-spectrum beta-lactamase [Escherichia coli]
gi|283466735|emb|CBI12393.1| extended-spectrum beta-lactamase CTX-M-24 [Shigella sonnei]
Length = 291
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 249 IAVIWPQGRAPLVLVT 264
>gi|197724695|emb|CAP12349.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 36/265 (13%), Positives = 65/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----------KLPYYTL-LDTNTGHVIAENYPDH 49
MR + + + + + + + +D +G +A D
Sbjct: 1 MRYVRLCVISLLATLPLAVDAGPQPLEQIKQSESQLSGRVGMVEMDLASGRTLAAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMVSTFKVLLCGAVLARVDAGVEQLVRRIHYRQQDLVDYSPVSEKHLVDGMTIGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITLSDNSAGNLLLATVGGPAGLTAFLRQIGDNVTRLDRWETALNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + Q+ + + AV KTG
Sbjct: 181 SMAATLRKLLTAQHLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 ----AGERGARGIVALLGPDGKPER 253
>gi|47109376|emb|CAG28417.1| CTX-M-12a enzyme [Klebsiella pneumoniae]
Length = 291
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 74/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVII--AMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ A+ +L P + + L++ + ++
Sbjct: 6 LRQFTLMATAAVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + ++L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPSLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|284929762|ref|YP_003422284.1| beta-lactamase class A [cyanobacterium UCYN-A]
gi|284810206|gb|ADB95903.1| beta-lactamase class A [cyanobacterium UCYN-A]
Length = 340
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 32/244 (13%), Positives = 68/244 (27%), Gaps = 8/244 (3%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
++F + + + + + + L D ++ AS K+
Sbjct: 76 KKFAARELINLKKQLESINTKYPNVEPKAWFL-DLDSNT-YVNFNGTKSIAAASTIKIPI 133
Query: 62 AYVVFSFLKEKKAMLTTPITISKNASE-YPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
F + L IT+ K + + G T + +I+ S N
Sbjct: 134 LVAFFEKVDAGDISLDQMITMDKEIIVGGSGNMQYMETGKQFTALEIARKMIIISDNTAT 193
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+ + +N K G+ T N+ + + T+ D+A L +I+
Sbjct: 194 ELLIRQIGGKL-----FLNERFKKWGMRQTVINNSLPDLDGTNRTSPEDLAKLLLKIEKG 248
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ ++ K + KTG + + + I
Sbjct: 249 NLISLRSRDRFLNIMRETKTKTLLPKGLERNASIAHKTGDIGTIIADAGIIDMPTGRRYI 308
Query: 241 AVIL 244
I
Sbjct: 309 GAIF 312
>gi|268634791|gb|ACZ16614.1| beta lactamase blaCTX-M-9 [Escherichia coli]
Length = 272
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTAGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 249 IAVIWPQGRAPLVLVT 264
>gi|238864052|gb|ACR66302.1| beta-lactamase CTX-M9 [Escherichia coli]
gi|238864054|gb|ACR66303.1| beta-lactamase CTX-M9 [Escherichia coli]
gi|238864056|gb|ACR66304.1| beta-lactamase CTX-M9 [Proteus vulgaris]
Length = 276
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 4 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 61
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 62 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 121
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 122 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 181
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 182 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTAGDKTGSGDYGTTND 241
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 242 IAVIWPQGRAPLVLVT 257
>gi|129772167|gb|ABO31382.1| CTX-M-type extended spectrum beta-lactamase [Klebsiella pneumoniae]
gi|129772206|gb|ABO31383.1| extended-spectrum beta-lactamase CTX-M-type [Klebsiella pneumoniae]
gi|129772238|gb|ABO31384.1| extended-spectrum beta-lactamase CTX-M-type [Klebsiella pneumoniae]
Length = 291
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTAGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 249 IAVIWPQGRAPLVLVT 264
>gi|19550880|gb|AAL91566.1|AF484965_1 extended-spectrum beta-lactamase CTX-M-9 [Escherichia coli]
Length = 264
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 6 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 63
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 64 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 123
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 124 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 183
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 184 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTAGDKTGSGDYGTTND 243
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 244 IAVIWPQGRAPLVLVT 259
>gi|152964496|ref|YP_001360280.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Kineococcus radiotolerans SRS30216]
gi|151359013|gb|ABS02016.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Kineococcus radiotolerans SRS30216]
Length = 478
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
A+ + P L+ +++D TG + D P PAS+ KL+TA
Sbjct: 76 AALGGVVAPLLADPALGASVSTSVVDALTGETLLATAADVPRTPASVAKLLTAVAAL 132
>gi|220906580|ref|YP_002481891.1| beta-lactamase [Cyanothece sp. PCC 7425]
gi|219863191|gb|ACL43530.1| putative beta-lactamase [Cyanothece sp. PCC 7425]
Length = 423
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 77/256 (30%), Gaps = 19/256 (7%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ + L + +TG A+ + AS K F + K L
Sbjct: 143 IAARPGLTAGAFFL-NLDTGA-YADVNGAATFPAASTIKTPILVAFFQDVDAGKIKLDER 200
Query: 80 ITISKN-ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ + + + K G+ + L+I S N + + L +
Sbjct: 201 LVMRPDLIASEAGIMQYQKPGTKFSALETADLMITISDNTATNMLIDRL-----GGAAAL 255
Query: 139 NNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
N + GL + + + + T+A+D+A L + + + L+I
Sbjct: 256 NQRFLSWGL--QQTVIRNWLPDLKGTNTTSAKDLAYLM-MLVGRGDLVSVRSRDRLLDIM 312
Query: 197 GKKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL-----GALDRN 250
+ NT G GA KTG + + Q +A + +
Sbjct: 313 HRTVTNTLLPQGLGEGAKIAHKTGDIGIVIGDGGMVDMPSGQRYVAAAMVRRPYNDVRGR 372
Query: 251 TRNKVSASLLSMGFYN 266
+ + L F
Sbjct: 373 ELIQQMSRLTYQAFSK 388
>gi|228958789|ref|ZP_04120500.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228800886|gb|EEM47792.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 143
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 32/81 (39%)
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ K + G DG++T F+ ++ V++A D LI+VIL
Sbjct: 9 YQFTFKDSQVFNTNKMIYSLNENIKLQGVDGLQTSFSTNGNYSFVSTAKLRDTRLISVIL 68
Query: 245 GALDRNTRNKVSASLLSMGFY 265
A + N + LL GF
Sbjct: 69 DADEENISFIETKKLLQYGFD 89
>gi|308049640|ref|YP_003913206.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Ferrimonas balearica DSM 9799]
gi|307631830|gb|ADN76132.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Ferrimonas balearica DSM 9799]
Length = 474
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
MR FL+++ + + F S+ T +++ G +A + D PAS
Sbjct: 1 MRLISSFLLLLTPWVFATPADFESLLPTGSQAGLVVINQQ-GETLAAHNADTLMVPASTV 59
Query: 58 KLMTA 62
KL TA
Sbjct: 60 KLFTA 64
>gi|309951208|emb|CBL80615.1| beta-lactamase [Kluyvera ascorbata]
Length = 291
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A + + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAALLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIQAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDVLAAAAKIVTHGF 291
>gi|30351067|gb|AAP22736.1| beta-lactamase CTX-M-29 [Escherichia coli]
Length = 291
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 41/265 (15%), Positives = 73/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVII--AMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ A+ +L P + + L++ + ++
Sbjct: 6 LRQFTLMATAAVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|18390033|gb|AAL68825.1|AF462635_1 extended-spectrum beta-lactamase CTX-M-5 [Acinetobacter baumannii]
Length = 276
Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 41 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 98
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 99 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 158
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 159 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWG 218
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 219 VGDKTGSGDYGTTNDIAVIWPANHAPLVLVTYFTQPEQKAESRRDVLAAAAKIVTHGF 276
>gi|156720183|dbj|BAF76730.1| D-amino-acid amidase [Brevibacterium iodinum]
Length = 266
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 13/130 (10%), Positives = 40/130 (30%), Gaps = 6/130 (4%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
D ++G + + + + AS+ K+ + K+ L + +
Sbjct: 15 SALAFDVDSGERVFAHNENDELDTASMGKVFLLHTALQMFKDGTLDLEERLHRRPSERVD 74
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+ +++ + L+ S N + + ++++ N + LG
Sbjct: 75 ESGIWYLMEQDDLSIFDVALLIGAFSDNFATNVLIRRV------GLENVGNQVEKLGYRN 128
Query: 150 THFMNAHGVV 159
+ +
Sbjct: 129 SGLHDFLRWP 138
>gi|55822068|ref|YP_140509.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
thermophilus CNRZ1066]
gi|55738053|gb|AAV61694.1| D-alanyl-D-alanine carboxypeptidase, truncated [Streptococcus
thermophilus CNRZ1066]
Length = 189
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 12/131 (9%)
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL----DRNTRNKVSASLLSMGFYN 266
G DG++TG T +G + VA + + S+I VI+ A D + LL+ Y+
Sbjct: 10 KGVDGLQTGTTDLAGSSFVAHSNESGMSIITVIINAEHTDTDDYAWFTATNELLNYVVYH 69
Query: 267 KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDK------ESHF 320
+ ++ + + S++V K N ++ +K
Sbjct: 70 WESKTIAKKGQA--ISKSQVDVLDGKSKQVSAVAKSDFNIIQKIDANNNKHIKVTTNQIQ 127
Query: 321 IDFEKITLLKN 331
+ +
Sbjct: 128 SPAKSGDKVGT 138
>gi|38492412|pdb|1IYS|A Chain A, Crystal Structure Of Class A Beta-Lactamase Toho-1
Length = 262
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 27 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 84
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 85 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 144
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 145 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 204
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGA--LDRNTRNKV----SASLLSMGF 264
G KTG N +A + L+ V + R + +A +++ GF
Sbjct: 205 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAERRRDILAAAAKIVTHGF 262
>gi|115033|sp|P22390|BLAC_CITDI RecName: Full=Beta-lactamase; AltName: Full=Penicillinase; Flags:
Precursor
gi|40431|emb|CAA44485.1| class A Beta-lactamase [Citrobacter koseri]
gi|228510|prf||1805231A beta lactamase
Length = 294
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 62/238 (26%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K M A V + + +L + I K +
Sbjct: 59 ADRSQILY--RGDERFAMCSTSKTMVAAAVLKQSETQHDILQQKMVIKKADLTNWNPVTE 116
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNLGLSATHFM 153
MTL + S N + E F + + +T+ L
Sbjct: 117 KYVDKEMTLAELSAATLQYSDNTAMNKLLEHLGGTSNVTAFARSIGDTTFRLDRKEPELN 176
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + L D Q+ + A
Sbjct: 177 TAIPGDERDTTCPLAMAKSLHKLTLGDALAGAQRAQLVEWLKGNTTGGQSIRAGLPEGWV 236
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A D+ LI V A R +A +++ G
Sbjct: 237 VGDKTGAGDYGTTNDIAVIWPEDRAPLILVTYFTQPQQDAKGRKDILAAAAKIVTEGL 294
>gi|160948461|emb|CAJ47138.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 34/265 (12%), Positives = 72/265 (27%), Gaps = 26/265 (9%)
Query: 2 RQFLVIIAMAMLSNI-FPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
++++ + +++L+ + + + + +D +G + D
Sbjct: 1 KRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|301349385|gb|ADK74336.1| beta-lactamase CTX-M-27 [Shigella sonnei]
Length = 288
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 7 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 64
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 65 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 124
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 125 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 184
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 185 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGGYGTTND 244
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 245 IAVIWPQGRAPLVLVT 260
>gi|288558437|dbj|BAI68283.1| CTX-M 27 extended spectrum beta lactamase [Escherichia coli]
Length = 277
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 64/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 4 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 61
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 62 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 121
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 122 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 181
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 182 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGGYGTTND 241
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 242 IAVIWPQGRAPLVLVT 257
>gi|256367787|ref|YP_003108344.1| CTX-M-15 [Escherichia coli]
gi|302595421|ref|YP_003829283.1| beta-lactamase [Escherichia coli]
gi|302595555|ref|YP_003829173.1| beta-lactamase [Escherichia coli]
gi|228480724|gb|ACQ42051.1| CTX-M-15 [Escherichia coli]
gi|302310196|gb|ADL14067.1| CTX-M-15 [Escherichia coli]
gi|302310309|gb|ADL14177.1| CTX-M-15 [Escherichia coli]
Length = 311
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 26 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 83
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 84 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 143
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 144 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 203
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 204 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 259
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 260 SGGYGTTNDIAVIWPKDRAPLILVT 284
>gi|319900616|ref|YP_004160344.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Bacteroides helcogenes P 36-108]
gi|319415647|gb|ADV42758.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Bacteroides helcogenes P 36-108]
Length = 476
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 18/88 (20%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-----------------YT-LLDTNTGHVI 42
M++FL + ++ IA + D G +
Sbjct: 1 MKRFLTYLFWSICLLPLSAQDIAMQPDSLSSRIDTLIKYKLPQGSNVAISVFDLTDGKPL 60
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLK 70
D PAS KL+T S +
Sbjct: 61 YGYQSDKLSRPASTMKLLTTITALSQPQ 88
>gi|259416425|ref|ZP_05740345.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Silicibacter sp. TrichCH4B]
gi|259347864|gb|EEW59641.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Silicibacter sp. TrichCH4B]
Length = 497
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 19 FLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ ++ D TG + D PAS+ K++TA L
Sbjct: 51 AILKGARLSGESACVVADARTGQTLESARGDAALPPASVAKVLTALYALDSLGAGY 106
>gi|238864038|gb|ACR66295.1| beta-lactamase CTX-M3 [Escherichia coli]
gi|238864040|gb|ACR66296.1| beta-lactamase CTX-M3 [Escherichia coli]
Length = 274
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/260 (14%), Positives = 67/260 (25%), Gaps = 26/260 (10%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPDHP 50
+ + +L P + + L++ + ++ D
Sbjct: 3 LMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY--RADER 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + + +L + I K+ + TM+L
Sbjct: 61 FAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLAELSAA 120
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARD 169
+ S N + + + L T + T+ R
Sbjct: 121 ALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDTTSPRA 180
Query: 170 MAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
MA D + +KG A G KTG
Sbjct: 181 MAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTGSGDYG 236
Query: 225 GFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 237 TTNDIAVIWPKDRAPLILVT 256
>gi|170676134|gb|ACB30322.1| CTX-M-28 beta lactamase [Escherichia coli]
gi|170676136|gb|ACB30323.1| CTX-M-28 beta lactamase [Klebsiella pneumoniae]
gi|170676138|gb|ACB30324.1| CTX-M-28 beta lactamase [Klebsiella pneumoniae]
gi|170676140|gb|ACB30325.1| CTX-M-28 beta lactamase [Enterobacter sp. O050109]
Length = 290
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 44/292 (15%), Positives = 80/292 (27%), Gaps = 34/292 (11%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 5 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 62
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 63 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 122
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 123 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 182
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 183 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 238
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A D+ LI V A R +A +++ G
Sbjct: 239 SGGYGTTNDIAVIWPKDRAPLILVTYFTQPQPKAESRRDVLASAAKIVTNGL 290
>gi|114331058|ref|YP_747280.1| Beta-lactamase [Nitrosomonas eutropha C91]
gi|114308072|gb|ABI59315.1| Beta-lactamase [Nitrosomonas eutropha C91]
Length = 319
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 42/268 (15%), Positives = 83/268 (30%), Gaps = 19/268 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLDTNTGHVIAENYPDH 49
R+FL+ + A+ + + E +DT +G V+ + PD
Sbjct: 35 REFLIAVVSALAAMPVLSAASTEGEPASIADIEAKVGGRVGVFAVDTGSGKVL-AHRPDE 93
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS-TMTLDNAL 108
+ S K + A + + +++ L++ + + ++ MT+
Sbjct: 94 RFAMCSTFKWVLAATILAQVEQNLLSLSSHVLYGQADLLAYAPVTSMHAKEGFMTVSELT 153
Query: 109 KLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ IV S N A + +FV+ + L + + +
Sbjct: 154 RAAIVVSDNTAANLLLSKLGGPSVVTEFVRSCGDAVTRLDRNEPTLNDNDAGDLRDTTSP 213
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
++ + + + + + A G KTG
Sbjct: 214 RAMATLMGNVLCGNRLSSTSRDLLLQWLRDCETGYDRLRAKLPKDWLVGDKTGTGEHGAV 273
Query: 227 NIVASAIQGDQS--LIAVILGALDRNTR 252
N VA AI +S LIA L + R R
Sbjct: 274 NDVAIAIPPGRSPILIAAFL-SEGRADR 300
>gi|27573660|pdb|1IYO|A Chain A, Toho-1 Beta-Lactamase In Complex With Cefotaxime
gi|27573661|pdb|1IYP|A Chain A, Toho-1 Beta-Lactamase In Complex With Cephalothin
gi|27573662|pdb|1IYQ|A Chain A, Toho-1 Beta-Lactamase In Complex With Benzylpenicillin
gi|157830504|pdb|1BZA|A Chain A, Beta-Lactamase Toho-1 From Escherichia Coli Tuh12191
Length = 262
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 68/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 27 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 84
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +A
Sbjct: 85 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTAPTLN 144
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 145 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 204
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGA--LDRNTRNKV----SASLLSMGF 264
G KTG N +A + L+ V + R + +A +++ GF
Sbjct: 205 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAERRRDILAAAAKIVTHGF 262
>gi|21243888|ref|NP_643470.1| beta lactamase [Xanthomonas axonopodis pv. citri str. 306]
gi|21109491|gb|AAM38006.1| beta lactamase [Xanthomonas axonopodis pv. citri str. 306]
Length = 297
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 6/228 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLD+ TG + + + S K + A V + + K L + I +
Sbjct: 55 LLDSATGKRLGQR-EHERFPMCSTFKFVLAAAVLQQVDQGKLTLAQQVEIHASDMLEHAP 113
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G ++++ + ++ S N A + F++ + +
Sbjct: 114 VTERHVGGSLSVGELCRATMIYSDNPAANLLFPLVGDPAGVTAFLRGIGDAQTRTDRYEP 173
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T A A L + D Q Q+ I + + A T
Sbjct: 174 QMNRFVAGDPRDTTTPAAMAATLRTLLLGDALQPASRKQLTDWMIDNRTGDDCLRAGLTA 233
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQS---LIAVILGALDRNTRNKV 255
G KTG N +A L+ L + +
Sbjct: 234 GWKIGDKTGSNGTDTRNDIAILWPPKGRAPMLLTTYLNGAKVDDAARD 281
>gi|284989209|ref|YP_003407763.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Geodermatophilus obscurus DSM 43160]
gi|284062454|gb|ADB73392.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Geodermatophilus obscurus DSM 43160]
Length = 487
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
L+ + ++ + ++D G V+ + D P PAS KL+TA
Sbjct: 104 LAPLLASPALGPGVEAR---VVDVAAGEVLLDQDSDVPSTPASTAKLLTAVAAL 154
>gi|584844|sp|P37323|BLA4_KLEPN RecName: Full=Beta-lactamase SHV-4; AltName: Full=Ceftazidimase 5;
Short=CAZ-5
Length = 265
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 24 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 83
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 84 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 143
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 144 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQLQLLQWMVDDRVAGPLIRSVLPAG 203
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 204 WFIADKTG------------ASKRGARGIVALLGPNNKAER 232
>gi|29692031|gb|AAO88912.1| CTX-M-33 beta-lactamase [Escherichia coli]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYSPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|281335982|gb|ADA62548.1| CTX-M-36-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|281335930|gb|ADA62522.1| CTX-M-3-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|302340959|gb|ADL27532.1| class A beta-lactamase CTX-M-99 [Klebsiella pneumoniae]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 65/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTESTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 249 IAVIWPQGRAPLVLVT 264
>gi|29653373|ref|NP_819065.1| D-alanyl-meso-diaminopimelate endopeptidase [Coxiella burnetii
RSA 493]
gi|29540635|gb|AAO89579.1| D-alanyl-meso-diaminopimelate endopeptidase [Coxiella burnetii
RSA 493]
Length = 477
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
Query: 1 MRQ--FLVIIAMAMLSNIFPFLSIAE---------TNKLPY---YTLLDTNTGHVIAENY 46
M++ +L I+ S +F + K + + D TG VI
Sbjct: 1 MKKPFYLAILLSLFCSPLFAVEKQNPQTNINTILRSIKSKANLGFIVSDVKTGRVIFSER 60
Query: 47 PDHPWNPASLTKLMTAYVVFSF 68
++PAS KL TA +
Sbjct: 61 SQFLFSPASTQKLFTAVAALYY 82
>gi|237511599|gb|ACQ99521.1| CTX-M-90 extended-spectrum beta-lactamase [Salmonella sp. YLD3]
gi|260779996|gb|ACX50627.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 71/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAVAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|193227724|emb|CAQ42486.1| beta-lactamase [Kluyvera ascorbata]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWG 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDVLAAAAKIVTHGF 291
>gi|323709075|gb|ADY02554.1| beta-lactamase CTX-M-105 [Escherichia coli]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 71/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAVAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQREQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGGYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|273161388|gb|ACZ97622.1| SHV-1 beta-lactamase [Klebsiella pneumoniae]
Length = 253
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 36 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 95
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 96 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 155
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 156 LNEALXGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 215
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 216 WFIADKTG------------AGERGARGIVALLGPNNKAER 244
>gi|119964179|ref|YP_945959.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Arthrobacter aurescens TC1]
gi|119951038|gb|ABM09949.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Arthrobacter aurescens TC1]
Length = 481
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++ + + ++D +TG V+ + PAS KL+TA
Sbjct: 85 VAKLLDATLKPDGAGSISGVVMDASTGQVLFDREATANRIPASNMKLLTAVSALK 139
>gi|77158013|gb|ABA62022.1| CTX-M-51 beta-lactamase [Escherichia coli]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 71/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAVAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTAGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|281335956|gb|ADA62535.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|281335910|gb|ADA62512.1| CTX-M-22-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|161830665|ref|YP_001597802.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Coxiella burnetii RSA 331]
gi|161762532|gb|ABX78174.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Coxiella burnetii RSA 331]
Length = 477
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
Query: 1 MRQ--FLVIIAMAMLSNIFPFLSIAE---------TNKLPY---YTLLDTNTGHVIAENY 46
M++ +L I+ S +F + K + + D TG VI
Sbjct: 1 MKKPFYLAILLSLFCSPLFAVEKQNPQTNINTILRSIKSKANLGFIVSDVKTGRVIFSER 60
Query: 47 PDHPWNPASLTKLMTAYVVFSF 68
++PAS KL TA +
Sbjct: 61 SQFLFSPASTQKLFTAVAALYY 82
>gi|66932795|gb|AAY58235.1| extended-spectrum beta-lactamase CTX-M-3 [Escherichia coli]
gi|75914697|gb|ABA29760.1| extended-spectrum beta-lactamase CTX-M-3-like [Escherichia coli]
gi|84621436|gb|ABC59555.1| beta lactamase CTX-M-3 [Klebsiella pneumoniae]
Length = 282
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|281335904|gb|ADA62509.1| CTX-M-15-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|224223444|gb|ACN39712.1| CTX-M-type extended spectrum beta-lactamase [Escherichia coli]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ N + + + L T +
Sbjct: 124 ELSAAALQYGDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|46401610|dbj|BAD16611.1| beta-lactamase CTX-M-36 [Escherichia coli]
gi|281335902|gb|ADA62508.1| CTX-M-36 beta-lactamase [synthetic construct]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|16444918|emb|CAD08929.1| CTX-M-21 beta-lactamase [Escherichia coli]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 65/242 (26%), Gaps = 12/242 (4%)
Query: 33 LLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+D + V+ D + S +K+M A V + +K +L P+ I
Sbjct: 52 LIDTADNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYN 109
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ TMTL + S N + F + + + + L +
Sbjct: 110 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTE 169
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A T L Q+ + A
Sbjct: 170 PTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLP 229
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSM 262
G KTG N +A + L+ V A R +A +++
Sbjct: 230 TSWTVGDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAE 289
Query: 263 GF 264
G
Sbjct: 290 GL 291
>gi|66361079|pdb|1YLT|A Chain A, Atomic Resolution Structure Of Ctx-M-14 Beta-Lactamase
gi|66361085|pdb|1YLZ|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-14
Beta-Lactamase Complexed With Ceftazidime-Like Boronic
Acid
gi|66361086|pdb|1YLZ|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-14
Beta-Lactamase Complexed With Ceftazidime-Like Boronic
Acid
Length = 263
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 65/242 (26%), Gaps = 12/242 (4%)
Query: 33 LLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+D + V+ D + S +K+M A V + +K +L P+ I
Sbjct: 24 LIDTADNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYN 81
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ TMTL + S N + F + + + + L +
Sbjct: 82 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTE 141
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A T L Q+ + A
Sbjct: 142 PTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLP 201
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSM 262
G KTG N +A + L+ V A R +A +++
Sbjct: 202 TSWTVGDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAE 261
Query: 263 GF 264
G
Sbjct: 262 GL 263
>gi|238801224|gb|ACR56331.1| extended-spectrum beta-lactamase CTX-M-89 [Enterobacter cloacae]
Length = 291
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 73/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWRIK-----TDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA + D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLALGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|133919281|emb|CAM12803.1| class A beta-lactamase [Leminorella grimontii]
Length = 294
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 46/287 (16%), Positives = 81/287 (28%), Gaps = 28/287 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKL----------PYY------TLLD-TNTGHVIAENY 46
+ +L P + A ++ L+D + V+
Sbjct: 10 LMAAAVAPLLLGCAPLWASAASDAAGIQQKLANLEKSAGGRLGVALIDTEDNSRVLY--R 67
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
D + S +K+M V + K +L+ I I K + S+MTL+
Sbjct: 68 GDERFAMCSTSKVMAVAAVLKQSETDKGVLSKKIKIKKADLVNWNPITEKHVNSSMTLEE 127
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ S N I L K F + +++T+ L + A +
Sbjct: 128 LSAATLQYSDNVAMNKIIAHLGGPNKVTAFARSIDDTTFRLDRTEPSLNTAIPGDERDTT 187
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
T L + Q+ + A G KTG
Sbjct: 188 TPLAMAESLRNLTLGNALGETQRAQLVEWLKGNTTGGESIRAGLPKAWIVGDKTGSGDYG 247
Query: 225 GFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A ++ LI V A R +A +++ G
Sbjct: 248 TTNDIAVIWPENRAPLILVTYFTQPKQDAKSRRDVLAAAAKIVAEGL 294
>gi|238863970|gb|ACR66261.1| beta-lactamase CTX-M15 [Kluyvera intermedia]
gi|238863972|gb|ACR66262.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238863974|gb|ACR66263.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
gi|238863976|gb|ACR66264.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238863978|gb|ACR66265.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
gi|238863980|gb|ACR66266.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
gi|238863982|gb|ACR66267.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238863984|gb|ACR66268.1| beta-lactamase CTX-M15 [Raoultella terrigena]
gi|238863986|gb|ACR66269.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
gi|238863988|gb|ACR66270.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238863990|gb|ACR66271.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238863992|gb|ACR66272.1| beta-lactamase CTX-M15 [Raoultella terrigena]
gi|238863994|gb|ACR66273.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
gi|238863996|gb|ACR66274.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238863998|gb|ACR66275.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238864000|gb|ACR66276.1| beta-lactamase CTX-M15 [Raoultella terrigena]
gi|238864002|gb|ACR66277.1| beta-lactamase CTX-M15 [Klebsiella oxytoca]
gi|238864004|gb|ACR66278.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238864006|gb|ACR66279.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238864008|gb|ACR66280.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238864010|gb|ACR66281.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238864012|gb|ACR66282.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
gi|238864014|gb|ACR66283.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
gi|238864016|gb|ACR66284.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238864018|gb|ACR66285.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238864020|gb|ACR66286.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
gi|238864022|gb|ACR66287.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238864024|gb|ACR66288.1| beta-lactamase CTX-M15 [Klebsiella sp. 49]
gi|238864026|gb|ACR66289.1| beta-lactamase CTX-M15 [Klebsiella pneumoniae]
gi|238864028|gb|ACR66290.1| beta-lactamase CTX-M15 [Klebsiella sp. 51]
gi|238864030|gb|ACR66291.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238864032|gb|ACR66292.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238864034|gb|ACR66293.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|238864036|gb|ACR66294.1| beta-lactamase CTX-M15 [Escherichia coli]
Length = 274
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/260 (14%), Positives = 67/260 (25%), Gaps = 26/260 (10%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPDHP 50
+ + +L P + + L++ + ++ D
Sbjct: 3 LMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY--RADER 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + + +L + I K+ + TM+L
Sbjct: 61 FAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLAELSAA 120
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARD 169
+ S N + + + L T + T+ R
Sbjct: 121 ALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDTTSPRA 180
Query: 170 MAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
MA D + +KG A G KTG
Sbjct: 181 MAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTGSGGYG 236
Query: 225 GFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 237 TTNDIAVIWPKDRAPLILVT 256
>gi|157956218|gb|ABW06478.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
Length = 268
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/260 (14%), Positives = 67/260 (25%), Gaps = 26/260 (10%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPDHP 50
+ + +L P + + L++ + ++ D
Sbjct: 1 LMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY--RADER 58
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + + +L + I K+ + TM+L
Sbjct: 59 FAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLAELSAA 118
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARD 169
+ S N + + + L T + T+ R
Sbjct: 119 ALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDTTSPRA 178
Query: 170 MAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
MA D + +KG A G KTG
Sbjct: 179 MAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTGSGGYG 234
Query: 225 GFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 235 TTNDIAVIWPKDRAPLILVT 254
>gi|82655072|emb|CAJ19604.1| OKP-A beta-lactamase [Klebsiella pneumoniae]
gi|82655074|emb|CAJ19605.1| OKP-A beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 66/258 (25%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPQPLEQITLSESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDERLDRRIRYPQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG A +
Sbjct: 188 KLLTSHALSDRSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTG------------AGE 235
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG + R
Sbjct: 236 RGSRGIVALLGPNGKAER 253
>gi|209524499|ref|ZP_03273047.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Arthrospira maxima CS-328]
gi|209494957|gb|EDZ95264.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Arthrospira maxima CS-328]
Length = 474
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 21/82 (25%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLD--------------TNTG 39
M+ + + ++S P ++ + P LD ++G
Sbjct: 1 MKSIAIALFSTLISFSVPVMANEPRSICPAVLETEINAIALDPKFSRSRWGIMVESLDSG 60
Query: 40 HVIAENYPDHPWNPASLTKLMT 61
V+ + + PAS KL+T
Sbjct: 61 QVLYSLDSERFFLPASTIKLLT 82
>gi|146387089|pdb|2P74|A Chain A, Ctx-M-9 Class A Beta-Lactamase Apo Crystal Structure At
0.88 Angstrom Resolution
gi|146387090|pdb|2P74|B Chain B, Ctx-M-9 Class A Beta-Lactamase Apo Crystal Structure At
0.88 Angstrom Resolution
gi|225734188|pdb|3G2Y|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 1
(Gf4)
gi|225734189|pdb|3G2Y|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 1
(Gf4)
Length = 263
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 65/242 (26%), Gaps = 12/242 (4%)
Query: 33 LLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+D + V+ D + S +K+M A V + +K +L P+ I
Sbjct: 24 LIDTADNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYN 81
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ TMTL + S N + F + + + + L +
Sbjct: 82 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTE 141
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A T L Q+ + A
Sbjct: 142 PTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLP 201
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSM 262
G KTG N +A + L+ V A R +A +++
Sbjct: 202 TSWTAGDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAE 261
Query: 263 GF 264
G
Sbjct: 262 GL 263
>gi|66361077|pdb|1YLJ|A Chain A, Atomic Resolution Structure Of Ctx-M-9 Beta-Lactamase
gi|66361081|pdb|1YLY|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Complexed With Ceftazidime-Like Boronic Acid
gi|66361082|pdb|1YLY|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Complexed With Ceftazidime-Like Boronic Acid
gi|66361089|pdb|1YM1|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Complexed With A Boronic Acid Inhibitor (Sm2)
gi|66361090|pdb|1YM1|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Complexed With A Boronic Acid Inhibitor (Sm2)
gi|66361102|pdb|1YMS|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Complexed With Nafcinin-Like Boronic Acid Inhibitor
gi|66361103|pdb|1YMS|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Complexed With Nafcinin-Like Boronic Acid Inhibitor
gi|66361104|pdb|1YMX|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Covalently Linked To Cefoxitin
gi|66361105|pdb|1YMX|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 Beta-Lactamase
Covalently Linked To Cefoxitin
gi|225734190|pdb|3G2Z|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 2
(Gz2)
gi|225734191|pdb|3G2Z|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 2
(Gz2)
gi|225734192|pdb|3G30|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 3
(G30)
gi|225734193|pdb|3G31|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 4
(Gf1)
gi|225734194|pdb|3G31|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 4
(Gf1)
gi|225734195|pdb|3G32|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 6
(3g3)
gi|225734196|pdb|3G32|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 6
(3g3)
gi|225734197|pdb|3G34|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 11
(1ce)
gi|225734198|pdb|3G34|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 11
(1ce)
gi|225734199|pdb|3G35|A Chain A, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 12
(F13)
gi|225734200|pdb|3G35|B Chain B, Ctx-M-9 Class A Beta-Lactamase Complexed With Compound 12
(F13)
Length = 263
Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 65/242 (26%), Gaps = 12/242 (4%)
Query: 33 LLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+D + V+ D + S +K+M A V + +K +L P+ I
Sbjct: 24 LIDTADNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYN 81
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ TMTL + S N + F + + + + L +
Sbjct: 82 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTE 141
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A T L Q+ + A
Sbjct: 142 PTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLP 201
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSM 262
G KTG N +A + L+ V A R +A +++
Sbjct: 202 TSWTAGDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAE 261
Query: 263 GF 264
G
Sbjct: 262 GL 263
>gi|281335928|gb|ADA62521.1| CTX-M-30-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|124021056|gb|ABM88808.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
Length = 290
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|82655098|emb|CAJ19618.1| OKP-B beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 65/258 (25%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPQPLEQIKISESQLAGRVGYIEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMATTLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T Q+ + + AV KTG A +
Sbjct: 188 RLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTG------------AGE 235
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG + R
Sbjct: 236 RGSRGIVALLGPDGKAER 253
>gi|27383434|ref|NP_774964.1| ES-beta-lactamase [Citrobacter freundii]
gi|190410425|ref|YP_001965928.1| CTX-M-3 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
gi|216967815|ref|YP_002333323.1| beta-lactamase CTX-M3 [Klebsiella pneumoniae]
gi|256367540|ref|YP_003108099.1| beta-lactamase CTX-M-3 precursor [Escherichia coli]
gi|2765065|emb|CAA71321.1| ES-beta-lactamase [Citrobacter freundii]
gi|13560279|dbj|BAB40925.1| CTX-M-3 type beta-lactamase [Citrobacter koseri]
gi|27261287|gb|AAN87628.1| ES-beta-lactamase [Citrobacter freundii]
gi|31096322|gb|AAP43781.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
gi|39984736|gb|AAR36116.1| extended-spectrum beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
gi|45535499|emb|CAG14930.1| beta-lactamase CTX-M-3 [Kluyvera ascorbata]
gi|47496744|dbj|BAD20193.1| CTX-M-3 type beta-lactamase [Salmonella enterica subsp. enterica
serovar Senftenberg]
gi|50789185|dbj|BAD34467.1| beta-lactamase [Citrobacter freundii]
gi|50789187|dbj|BAD34468.1| beta-lactamase [Citrobacter koseri]
gi|50789190|dbj|BAD34469.1| beta-lactamase [Enterobacter aerogenes]
gi|50789192|dbj|BAD34470.1| beta-lactamase [Enterobacter cloacae]
gi|50789195|dbj|BAD34471.1| beta-lactamase [Klebsiella pneumoniae]
gi|50789197|dbj|BAD34472.1| beta-lactamase [Serratia marcescens]
gi|50789200|dbj|BAD34473.1| beta-lactamase [Klebsiella oxytoca]
gi|50789202|dbj|BAD34474.1| beta-lactamase [Escherichia coli]
gi|50789204|dbj|BAD34475.1| beta-lactamase [Escherichia coli]
gi|54292585|gb|AAV32431.1| beta-lactamase [Escherichia coli]
gi|70671424|emb|CAJ01336.1| CTX-M-3 beta-lactamase [Serratia marcescens]
gi|70671427|emb|CAJ01338.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
gi|70671437|emb|CAJ01346.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
gi|70671443|emb|CAJ01351.1| beta-lactamase CTX-M-3 [Proteus mirabilis]
gi|71979779|dbj|BAE17045.1| beta-lactamase CTX-M-3 [Escherichia coli]
gi|71979781|dbj|BAE17046.1| beta-lactamase CTX-M-3 [Escherichia coli]
gi|83265610|gb|ABB97553.1| beta-lactamase CTX-M-3 [Escherichia coli]
gi|83416719|gb|ABC18324.1| beta-lactamase CTX-M-3 [Enterobacter cloacae]
gi|83416721|gb|ABC18325.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
gi|84657407|gb|ABC60031.1| extended-spectrum beta-lactamase CTX-M-3 [Enterobacter aerogenes]
gi|84657409|gb|ABC60032.1| extended spectrum beta-lactamase CTX-M-3 [Citrobacter freundii]
gi|112385954|gb|ABI17941.1| beta-lactamase [Salmonella sp. 577]
gi|130918089|gb|ABO32642.1| extended-spectrum beta-lactamase CTX-M-3 [Enterobacter aerogenes]
gi|146151219|gb|ABQ02985.1| CTX-M-3 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
gi|147712723|gb|ABQ45880.1| extended-spectrum beta-lactamase CTX-M-3 [Proteus mirabilis]
gi|208609561|dbj|BAG72215.1| beta-lactamase CTX-M-3 [Enterobacter aerogenes]
gi|209483436|gb|ACI47257.1| extended-spectrum class A beta-lactamase CTX-M-3 [Escherichia coli]
gi|215397987|gb|ACJ65264.1| beta-lactamase CTX-M3 [Klebsiella pneumoniae]
gi|221149274|gb|ACM04460.1| CTX-M-3 extended-spectrum beta-lactamase [Escherichia coli]
gi|224696956|emb|CAR82577.1| beta-lactamase [Escherichia coli]
gi|228480795|gb|ACQ42121.1| beta-lactamase CTX-M-3 precursor [Escherichia coli]
gi|254871262|gb|ACT83744.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
gi|254871266|gb|ACT83747.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
gi|254871271|gb|ACT83750.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
gi|254927429|gb|ACT85946.1| beta-lactamase CTX-M-3 [Klebsiella pneumoniae]
gi|256858909|gb|ACV31764.1| beta-lactamase CTX-M-3 [Escherichia coli]
gi|297498980|gb|ACU44514.2| beta-lactamase CTX-M-3 [Escherichia coli]
gi|324036033|gb|ADY17613.1| beta-lactamase CTX-M-3 [Enterobacter cloacae]
gi|324036037|gb|ADY17616.1| beta-lactamase CTX-M-3 [Enterobacter aerogenes]
gi|324036041|gb|ADY17619.1| beta-lactamase CTX-M-3 [Enterobacter cloacae]
gi|324036045|gb|ADY17622.1| beta-lactamase CTX-M-3 [Enterobacter aerogenes]
gi|324036048|gb|ADY17624.1| beta-lactamase CTX-M-3 [Enterobacter cloacae]
gi|324036051|gb|ADY17626.1| beta-lactamase CTX-M-3 [Enterobacter cloacae]
gi|324036054|gb|ADY17628.1| beta-lactamase CTX-M-3 [Enterobacter cloacae]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|281336002|gb|ADA62558.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|195954350|gb|ACG58882.1| SHV-40 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 249
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 35/257 (13%), Positives = 67/257 (26%), Gaps = 21/257 (8%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASLT 57
+ ++A L+ + + + +D +G + D + S
Sbjct: 1 ISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMSTF 60
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K++ V + + L I + S MT+ I S N
Sbjct: 61 KVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSDN 120
Query: 118 DIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
A + F++ + + L T A T A A L
Sbjct: 121 SAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLRK 180
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ + Q+ + + +V KTG A +
Sbjct: 181 LLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------------AGER 228
Query: 236 DQSLIAVILGALDRNTR 252
I +LG ++ R
Sbjct: 229 GGRGIVALLGPNNKAER 245
>gi|19526204|gb|AAL86924.1| beta-lactamase CTX-M-22 [Klebsiella pneumoniae]
gi|61992246|gb|AAX58181.1| beta-lactamase CTX-M-22 [Enterobacter cloacae]
gi|83415873|gb|ABC18115.1| extended spectrum beta-lactamase CTX-M-22 [Serratia marcescens]
gi|166092026|gb|ABY82050.1| beta-lactamase CTX-M-22 [Escherichia coli]
gi|166092030|gb|ABY82052.1| beta-lactamase CTX-M-22 [Escherichia coli]
gi|281335918|gb|ADA62516.1| CTX-M-22 beta-lactamase [synthetic construct]
gi|300392844|gb|ADK11443.1| beta-lactamase CTX-M-22 [Serratia liquefaciens]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|254521673|ref|ZP_05133728.1| beta-lactamase [Stenotrophomonas sp. SKA14]
gi|219719264|gb|EED37789.1| beta-lactamase [Stenotrophomonas sp. SKA14]
Length = 342
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + AS+TK++TA + F ++E + L
Sbjct: 62 DADTRYPIASVTKMVTAILAFKLIEEGRLSLDDH 95
>gi|56554773|gb|AAV97957.1| CTX-M type extended spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDGTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|151861|gb|AAA26087.1| beta-lactamase [Plasmid R974]
Length = 287
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 37/266 (13%), Positives = 66/266 (24%), Gaps = 26/266 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADAMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKT-DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A L T Q+ + + +V KTG
Sbjct: 181 SMAATLRNVGLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------- 233
Query: 227 NIVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 234 -----AGERGARGIVALLGPNNKAER 254
>gi|77464153|ref|YP_353657.1| penicillin binding protein [Rhodobacter sphaeroides 2.4.1]
gi|77388571|gb|ABA79756.1| possible penicillin binding protein [Rhodobacter sphaeroides
2.4.1]
Length = 485
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
Y + D +G V+ PAS K +TA
Sbjct: 58 YVVADARSGTVLEAANAALRLPPASTAKTVTALYGLE 94
>gi|295345508|gb|ADG01902.1| CTX-M-15 [Pantoea agglomerans]
Length = 293
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 8 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 65
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 66 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 125
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 126 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 185
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 186 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 241
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 242 SGGYGTTNDIAVIWPKDRAPLILVT 266
>gi|281335960|gb|ADA62537.1| CTX-M-28-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|238801268|gb|ACR56347.1| beta-lactamase CTX-M-28 [Klebsiella pneumoniae]
Length = 284
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|197215901|gb|ACH53188.1| CTX-M-65 beta-lactamase [Escherichia coli]
Length = 278
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/278 (14%), Positives = 71/278 (25%), Gaps = 24/278 (8%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHPWNPAS 55
+ +L P + + L +D + V+ D + S
Sbjct: 3 CIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDERFPMCS 60
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
+K+M A V + +K +L P+ I + TMTL + S
Sbjct: 61 TSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAAALQYS 120
Query: 116 ANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N + F + + + + L + A T L
Sbjct: 121 DNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRAMAQTL 180
Query: 174 SWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAI 233
Q+ + A G KTG N +A
Sbjct: 181 RQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGGYGTTNDIAVIW 240
Query: 234 QGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+ L+ V A R +A +++ G
Sbjct: 241 PQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 278
>gi|8134350|sp|Q47066|BLT1_ECOLX RecName: Full=Beta-lactamase Toho-1; Flags: Precursor
gi|1037162|dbj|BAA07082.1| beta-lactamase (Toho-1) [Escherichia coli]
gi|50400168|gb|AAT76431.1| beta-lactamase TOHO-1 [Shigella flexneri]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGA--LDRNTRNKV----SASLLSMGF 264
G KTG N +A + L+ V + R + +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAERRRDILAAAAKIVTHGF 291
>gi|323709061|gb|ADY02545.1| beta-lactamase CTX-M-101 [Escherichia coli]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 73/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ + S N + + + L T +
Sbjct: 124 ELIAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|308198799|gb|ADO17948.1| beta-lactamase CTX-M-98 [Escherichia coli]
gi|313510882|gb|ADR66516.1| beta-lactamase CTX-M-98 [Escherichia coli]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 71/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAVAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGGYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|300986936|ref|ZP_07177912.1| conserved domain protein [Escherichia coli MS 45-1]
gi|300407822|gb|EFJ91360.1| conserved domain protein [Escherichia coli MS 45-1]
gi|307626442|gb|ADN70746.1| D-alanyl-D-alanine carboxypeptidase [Escherichia coli UM146]
gi|315295234|gb|EFU54569.1| conserved domain protein [Escherichia coli MS 153-1]
Length = 63
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 13/65 (20%)
Query: 1 MRQFLVIIAMAMLSNIF--------PFLSIAETNKLPYYTLLDTNTGHVI---AENYPDH 49
M++ L+I A + N+ PF + L+D TG ++
Sbjct: 1 MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTGVMSINS-- 58
Query: 50 PWNPA 54
PA
Sbjct: 59 AIPPA 63
>gi|154707193|ref|YP_001423565.1| D-alanyl-meso-diaminopimelate endopeptidase [Coxiella burnetii
Dugway 5J108-111]
gi|154356479|gb|ABS77941.1| D-alanyl-meso-diaminopimelate endopeptidase [Coxiella burnetii
Dugway 5J108-111]
Length = 477
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
Query: 1 MRQ--FLVIIAMAMLSNIFPFLSIAE---------TNKLPY---YTLLDTNTGHVIAENY 46
M++ +L I+ S +F + K + + D TG VI
Sbjct: 1 MKKPFYLAILLSLFCSPLFAVEKQNPQTNINTILRSIKSKANLGFIVSDVKTGRVIFSER 60
Query: 47 PDHPWNPASLTKLMTAYVVFSF 68
++PAS KL TA +
Sbjct: 61 SQFLFSPASTQKLFTAVAALYY 82
>gi|45934805|gb|AAS79469.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
bikiniensis]
Length = 231
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 39/194 (20%), Positives = 71/194 (36%), Gaps = 10/194 (5%)
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV----KS 115
MTAYV+ + I + + A+ ++ + L+ S
Sbjct: 1 MTAYVILEEHPLRPDEDGPLIEVDRTAAHEAGVGGESTVPVRSGERHSQRRLLELLLIPS 60
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
N++A +A ++ FV M + LG+ T + A G+ + +TA D L+
Sbjct: 61 GNNVARLLARWDSGSQAAFVTKMRRAAVRLGMKDTVYTGASGI-EPTTTSTAADQVRLTR 119
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS--AI 233
D + NTN + T G G+KTG + +G N++ +
Sbjct: 120 AAMEDPVFRAVVATRETTVPGLGTITNTNPLLDT-PGVLGVKTGSSTPAGGNLLWAYEVR 178
Query: 234 QGD--QSLIAVILG 245
G + L+ +L
Sbjct: 179 VGGAPRLLVGAVLH 192
>gi|281335938|gb|ADA62526.1| CTX-M-36-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|325533930|pdb|3N4I|A Chain A, Crystal Structure Of The Shv-1 D104e
Beta-LactamaseBETA-Lactamase Inhibitor Protein (Blip)
Complex
Length = 265
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 24 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVEYSPV 83
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 84 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 143
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 144 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 203
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 204 WFIADKTG------------AGERGARGIVALLGPNNKAER 232
>gi|317123754|ref|YP_004097866.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Intrasporangium
calvum DSM 43043]
gi|315587842|gb|ADU47139.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Intrasporangium
calvum DSM 43043]
Length = 506
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ + D +G ++ + PAS TKL+TA V
Sbjct: 84 ALAGVVTLPALADASLVVRDGQSGGILYDRGGSQRRIPASTTKLLTAAAV 133
>gi|281335942|gb|ADA62528.1| CTX-M-15-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|56463239|gb|AAV91761.1| beta-lactamase SHV [Escherichia coli]
Length = 248
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 34/224 (15%), Positives = 62/224 (27%), Gaps = 3/224 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ + + + L I +
Sbjct: 20 MDLASGRTLTAWRADERFPMMSTFKVVLCGAMLARVDAGDQQLERKIHYRQQDLVDYSPV 79
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 80 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 139
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 140 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 199
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNK 254
KTG + IVA + ++ I VI +R +
Sbjct: 200 WFIADKTGASKRGARGIVALLVPNNKAERIVVIYLRDTPASRAE 243
>gi|41056931|ref|NP_957562.1| hypothetical protein pC15-1a_016 [Escherichia coli]
gi|256367639|ref|YP_003108206.1| blaCTX-M-15 [Escherichia coli]
gi|291289023|ref|YP_003517526.1| beta-lactamase [Klebsiella pneumoniae]
gi|324120107|ref|YP_004249868.1| CTX-M-15 beta-lactamase [Klebsiella pneumoniae]
gi|12232328|gb|AAG48377.1| beta-lactamase UOE-1 [Escherichia coli]
gi|15636730|gb|AAL02127.1| beta-lactamase [Escherichia coli]
gi|20145492|emb|CAC84572.1| cefotaxime-hydrolyzing beta-lactamase, CTX-M-11 [Escherichia coli]
gi|38606068|gb|AAR25032.1| CTX-M-15 [Escherichia coli]
gi|38640800|gb|AAR26004.1| CTX-M-15 [Escherichia coli]
gi|39545938|gb|AAR28032.1| beta-lactamase CTX-M-15 [Escherichia coli]
gi|48994622|gb|AAT48020.1| CTX-M-15 beta-lactamase [Escherichia coli]
gi|48994628|gb|AAT48025.1| CTX-M-15 beta-lactamase [Escherichia coli]
gi|63029820|gb|AAY27811.1| beta-lactamase CTX-M-15 [Escherichia coli]
gi|66474797|gb|AAY46940.1| extended-spectrum beta-lactamase CTX-M-15 [Klebsiella pneumoniae]
gi|71273532|emb|CAJ13638.1| beta-lactamase [Escherichia coli]
gi|82393680|gb|AAY46939.1| extended-spectrum beta-lactamase CTX-M-15 [Klebsiella pneumoniae]
gi|83356019|gb|ABC16604.1| extended-spectrum beta-lactamase CTX-M-15 [Enterobacter cloacae]
gi|83356021|gb|ABC16605.1| extended-spectrum beta-lactamase CTX-M-15 [Klebsiella pneumoniae]
gi|85681941|gb|ABC73077.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
gi|92428672|gb|ABE76829.1| CTX-M-15 beta-lactamase [Klebsiella pneumoniae]
gi|92428674|gb|ABE76830.1| CTX-M-15 beta-lactamase [Escherichia coli]
gi|116643123|gb|ABK06381.1| beta-lactamase bla-CTX-M-15 [Escherichia coli]
gi|164665320|gb|ABY66122.1| CTX-m-3-like beta-lactamase [Escherichia coli]
gi|189172076|gb|ACD80393.1| CTX-M-15 beta-lactamase [Klebsiella pneumoniae]
gi|224381576|gb|ACN41909.1| CTX-M15 beta-lactamase [Salmonella enterica subsp. enterica serovar
Bonn]
gi|224381578|gb|ACN41910.1| CTX-M15 beta-lactamase [Salmonella enterica subsp. enterica serovar
Enteritidis]
gi|224579164|gb|ACN58169.1| CTX-M-15 extended-spectrum beta-lactamase [Escherichia coli]
gi|224799002|gb|ACN62990.1| CTX-M-15 beta-lactamase [Salmonella enterica subsp. enterica
serovar Enteritidis]
gi|225579692|gb|ACN94015.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
gi|225579700|gb|ACN94019.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
gi|225579706|gb|ACN94022.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
gi|225579708|gb|ACN94023.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
gi|225579714|gb|ACN94026.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
gi|225579716|gb|ACN94027.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
gi|225579720|gb|ACN94029.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
gi|225579722|gb|ACN94030.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
gi|225579726|gb|ACN94032.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
gi|225579728|gb|ACN94033.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
gi|225579732|gb|ACN94035.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
gi|225579738|gb|ACN94038.1| beta-lactamase blaCTX-M-15 [Klebsiella pneumoniae]
gi|228480576|gb|ACQ41904.1| blaCTX-M-15 [Escherichia coli]
gi|254927438|gb|ACT85952.1| beta-lactamase CTX-M-15 [Escherichia coli]
gi|254966772|gb|ACT97388.1| CTX-M-15 beta-lactamase [mixed culture bacterium AX_gF1DD01_02]
gi|254966897|gb|ACT97470.1| CTX-M-15 beta-lactamase [mixed culture bacterium CA_gF1DD01_03]
gi|254966905|gb|ACT97475.1| CTX-M-15 beta-lactamase [mixed culture bacterium CA_gF1DD01_14]
gi|254966907|gb|ACT97476.1| CTX-M-15 beta-lactamase [mixed culture bacterium CA_gF1DD01_15]
gi|254966954|gb|ACT97506.1| CTX-M-15 beta-lactamase [mixed culture bacterium CF_gF2-3DD01_01]
gi|254967173|gb|ACT97636.1| CTX-M-15 beta-lactamase [mixed culture bacterium PE_gF1DD01_14]
gi|254967204|gb|ACT97656.1| CTX-M-15 beta-lactamase [uncultured organism]
gi|256956391|gb|ACV32734.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|256956413|gb|ACV32752.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|256956416|gb|ACV32754.1| beta-lactamase CTX-M15 [Escherichia coli]
gi|256956428|gb|ACV32764.1| beta-lactamase [Escherichia coli]
gi|260914766|gb|ACX54236.1| beta-lactamase CTX-M-15 [Escherichia coli]
gi|290792154|gb|ADD63480.1| beta-lactamase [Klebsiella pneumoniae]
gi|297598717|gb|ADI48249.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|300250868|gb|ADJ95777.1| beta-lactamase CTX-M-15 [Enterobacter cloacae]
gi|308194910|gb|ADO16967.1| beta-lactamase CTX-M-15 [Escherichia coli]
gi|308194914|gb|ADO16970.1| beta-lactamase CTX-M-15 [Escherichia coli]
gi|308194918|gb|ADO16973.1| beta-lactamase CTX-M-15 [Escherichia coli]
gi|308194922|gb|ADO16976.1| beta-lactamase CTX-M-15 [Escherichia coli]
gi|308194926|gb|ADO16979.1| beta-lactamase CTX-M-15 [Escherichia coli]
gi|323388235|gb|ADX60384.1| CTX-M-15 beta-lactamase [Klebsiella pneumoniae]
gi|324036013|gb|ADY17598.1| beta-lactamase CTX-M-15 [Enterobacter cloacae]
gi|324036017|gb|ADY17601.1| beta-lactamase CTX-M-15 [Enterobacter cloacae]
gi|324036021|gb|ADY17604.1| beta-lactamase CTX-M-15 [Citrobacter freundii]
gi|324036025|gb|ADY17607.1| beta-lactamase CTX-M-15 [Enterobacter cloacae]
gi|324036029|gb|ADY17610.1| beta-lactamase CTX-M-15 [Enterobacter aerogenes]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|8469129|sp|O65975|BLC5_SALTY RecName: Full=Beta-lactamase CTX-M-5; AltName: Full=Cefotaximase 5;
Flags: Precursor
gi|3021577|emb|CAA06311.1| beta-lactamase [Salmonella typhimurium]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 41/288 (14%), Positives = 80/288 (27%), Gaps = 26/288 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLD-TNTGHVIAEN 45
+R+ ++ + + A+ N + L++ + ++
Sbjct: 6 IRRSMLTVMATLPLLFSSATLHAQANSVQQQLEALEKSSGGRLGVALINTADNSQILYL- 64
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + K +L + I + + TMTL
Sbjct: 65 -ADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKASDLVNYNPIAEKHVNGTMTLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + L +K F + + + + L + +A
Sbjct: 124 ELGAGALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLNSAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
T L Q+ + A G KTG
Sbjct: 184 TTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKCWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ GF
Sbjct: 244 GTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDVLAAAAKIVTHGF 291
>gi|257136310|gb|ACV44455.1| beta-lactamase OXY-2 [Klebsiella oxytoca]
Length = 289
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 43/285 (15%), Positives = 80/285 (28%), Gaps = 24/285 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP------------YYTLLD-TNTGHVIAENYPD 48
R+ ++ A+ +L + + L++ + ++ D
Sbjct: 7 RKIAMLAAVPLLLASGALWASTDAIHQKLTDLEKRSGGRLGVALINTADNSQILY--RGD 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M A V + K ++ + I+ + S MTL
Sbjct: 65 ERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITEKHLQSGMTLAELS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F + + + + L + A + T
Sbjct: 125 AATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLNTAIPGDERDTSTP 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L D Q+ + A G KTG
Sbjct: 185 LAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWVVGDKTGTGDYGTT 244
Query: 227 NIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A D L+ V A +R +A +++ G
Sbjct: 245 NDIAVIWPEDHAPLVLVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 289
>gi|208503029|gb|ACI29345.1| extended spectrum CTX-M-83 beta-lactamase [Salmonella enterica
subsp. enterica serovar Derby]
Length = 291
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 42/283 (14%), Positives = 73/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + HV+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTHVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|153206148|ref|ZP_01945411.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Coxiella burnetii 'MSU Goat Q177']
gi|165919239|ref|ZP_02219325.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Coxiella burnetii RSA 334]
gi|212217871|ref|YP_002304658.1| D-alanyl-meso-diaminopimelate endopeptidase [Coxiella burnetii
CbuK_Q154]
gi|120577278|gb|EAX33902.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Coxiella burnetii 'MSU Goat Q177']
gi|165917033|gb|EDR35637.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Coxiella burnetii RSA 334]
gi|212012133|gb|ACJ19513.1| D-alanyl-meso-diaminopimelate endopeptidase [Coxiella burnetii
CbuK_Q154]
Length = 477
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 14/82 (17%)
Query: 1 MRQ--FLVIIAMAMLSNIFPFLSIAE---------TNKLPY---YTLLDTNTGHVIAENY 46
M++ +L I+ S +F + K + + D TG VI
Sbjct: 1 MKKPFYLAILLSLFCSPLFAVEKQNPQTNINTILRSIKSKANLGFIVSDVKTGRVIFSER 60
Query: 47 PDHPWNPASLTKLMTAYVVFSF 68
++PAS KL TA +
Sbjct: 61 SQFLFSPASTQKLFTAVAALYY 82
>gi|32130559|gb|AAL78281.2| K1 beta-lactamase [Klebsiella oxytoca]
Length = 289
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 43/285 (15%), Positives = 80/285 (28%), Gaps = 24/285 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP------------YYTLLD-TNTGHVIAENYPD 48
R+ ++ A+ +L + + L++ + ++ D
Sbjct: 7 RKIAMLAAVPLLLASGALWASTDAIHQKLTDLEKRSGGRLGVALINTADNSQILY--RGD 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M A V + K ++ + I+ + S MTL
Sbjct: 65 ERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITEKHLQSGMTLAELS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F + + + + L + A + T
Sbjct: 125 AATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLNTAIPGDERDTSTP 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L D Q+ + A G KTG
Sbjct: 185 LAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWVVGDKTGGGDYGTT 244
Query: 227 NIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A D L+ V A +R +A +++ G
Sbjct: 245 NDIAVIWPEDHAPLVLVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 289
>gi|71906063|ref|YP_283650.1| D-alanyl-D-alanine carboxypeptidase PBP3 [Dechloromonas aromatica
RCB]
gi|71845684|gb|AAZ45180.1| D-Ala-D-Ala carboxypeptidase PBP3, Serine peptidase, MEROPS
family S13 [Dechloromonas aromatica RCB]
Length = 479
Score = 47.7 bits (111), Expect = 0.002, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 10/93 (10%)
Query: 1 MRQFLVIIAMAMLSNIFP--------FLSIAETNKLPY-YTLLDT-NTGHVIAENYPDHP 50
+++ +I + A ++ ++G + +
Sbjct: 3 IKRLAPLILAGISLAALADGLPPSVLGALKAAQIPAKNVAVVIQAVDSGSPLVAHNASQA 62
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
NPAS+ KL+T Y L TT T S
Sbjct: 63 MNPASVMKLVTTYAALDLLGPAYTWKTTVWTES 95
>gi|317496478|ref|ZP_07954828.1| hypothetical protein HMPREF0432_01432 [Gemella moribillum M424]
gi|316913409|gb|EFV34905.1| hypothetical protein HMPREF0432_01432 [Gemella moribillum M424]
Length = 350
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 43/298 (14%), Positives = 112/298 (37%), Gaps = 24/298 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE----TNKLPY--------YTLLDTNTGHVIAENYPD 48
MR + I +L + P L+ AE N + + NTG +I++ +
Sbjct: 1 MRLKKISILSILLVFLLPNLAKAEMLFLDNNAISNFSDVNTHLVVSEFNTGKIISKRGEN 60
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ ++L + +++ + LK K L T + I+ + + N ++ ++
Sbjct: 61 KQVSVSNLPNHLALFLLTNDLKNDKISLDTKLKITNSDAILNKYN--------LSSSVSV 112
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ + N+ + A+ E++ K ++ + ++ L+ T + + + +TA+
Sbjct: 113 QDALFLLENEESNALLEAIFKKYDLTIKKAKDILSSMSLNDTTLASL--TIDEKNMSTAK 170
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+M+ L+ I ++P+ + + + N + + G A+ +I
Sbjct: 171 NMSYLTNMILRNYPKLTEITKNPEVTLSSGSKATNNISFTESDKFRVL--GLNHANKNSI 228
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLS 286
+ + LI ++ ++ T F N + + + +N++
Sbjct: 229 TFAYSGDTKLLITILNQNDNKATYFDKLQKTYDYLFSNYSYKLALKAGSYKINNENIT 286
>gi|157956226|gb|ABW06482.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
Length = 263
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 37/260 (14%), Positives = 67/260 (25%), Gaps = 26/260 (10%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPDHP 50
+ + +L P + + L++ + ++ D
Sbjct: 1 LMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY--RADER 58
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + + +L + I K+ + TM+L
Sbjct: 59 FAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLAELSAA 118
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARD 169
+ S N + + + L T + T+ R
Sbjct: 119 ALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDTTSPRA 178
Query: 170 MAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
MA D + +KG A G KTG
Sbjct: 179 MAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTGSGGYG 234
Query: 225 GFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 235 TTNDIAVIWPKDRAPLILVT 254
>gi|70906550|gb|AAZ14955.1| beta-lactamase CTX-M-43 [Acinetobacter baumannii]
Length = 291
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGA--LDRNTRNKV----SASLLSMGF 264
G KTG N +A + L+ V + R + +A +++ GF
Sbjct: 234 VGDKTGSGGYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAERRRDILAAAAKIVTHGF 291
>gi|1513032|dbj|BAA12695.1| beta-lactamase [Klebsiella oxytoca]
gi|4775463|emb|CAB42614.1| beta-lactamase OXY-2a [Klebsiella oxytoca]
gi|32130557|gb|AAL78280.2| K1 beta-lactamase [Klebsiella oxytoca]
Length = 289
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 43/285 (15%), Positives = 80/285 (28%), Gaps = 24/285 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP------------YYTLLD-TNTGHVIAENYPD 48
R+ ++ A+ +L + + L++ + ++ D
Sbjct: 7 RKIAMLAAVPLLLASGALWASTDAIHQKLTDLEKRSGGRLGVALINTADNSQILY--RGD 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M A V + K ++ + I+ + S MTL
Sbjct: 65 ERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITEKHLQSGMTLAELS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F + + + + L + A + T
Sbjct: 125 AATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLNTAIPGDERDTSTP 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L D Q+ + A G KTG
Sbjct: 185 LAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWVVGDKTGAGDYGTT 244
Query: 227 NIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A D L+ V A +R +A +++ G
Sbjct: 245 NDIAVIWPEDHAPLVLVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 289
>gi|187926013|ref|YP_001892358.1| Beta-lactamase [Ralstonia pickettii 12J]
gi|241665500|ref|YP_002983859.1| beta-lactamase [Ralstonia pickettii 12D]
gi|187727767|gb|ACD28931.1| Beta-lactamase [Ralstonia pickettii 12J]
gi|240867527|gb|ACS65187.1| Beta-lactamase [Ralstonia pickettii 12D]
Length = 275
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 27/211 (12%), Positives = 55/211 (26%), Gaps = 2/211 (0%)
Query: 32 TLLDTNTGHV-IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ D TG V + E D PAS KL A + F K +
Sbjct: 29 IVADAATGTVVLHEGKCDERVTPASTFKLALAVMGFDHGFLKDEHTPVEHFRRGDPDWGG 88
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ + + + + A + K + + K+ G+ +
Sbjct: 89 EAWHQPIDPALWLQYSVVWYSQRITHAMGAQTFQAYVRKLGYGNMDVSGDPGKHNGMDRS 148
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
++ + R + + + + G G
Sbjct: 149 WITSSLKISPQEQVDFMRRIVNRQLPVSAHTYEMVDRTVQTWQVPGGWAVQGKTGTAGPA 208
Query: 211 LGADGMKTGFTCASGFN-IVASAIQGDQSLI 240
G + A + V A +GD++ +
Sbjct: 209 PGNTSPDGTWDQAHAYGWFVGWAKKGDKTYV 239
>gi|329768498|ref|ZP_08259987.1| hypothetical protein HMPREF0428_01684 [Gemella haemolysans M341]
gi|328836726|gb|EGF86381.1| hypothetical protein HMPREF0428_01684 [Gemella haemolysans M341]
Length = 392
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 35/256 (13%), Positives = 79/256 (30%), Gaps = 13/256 (5%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ + NTG +I++ + + L + Y++ LK K L + I I K + +
Sbjct: 36 VVSELNTGKIISKRGENEKVSVGKLPNYLALYLLADNLKNNKITLDSKIDI-KTSDDILT 94
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ L+ N + K + M+ L +
Sbjct: 95 KYKFESSITVKDAIFLLENEASNGLNQAIFSHFNIDITKAKDTLAAMSLNDTKLETFDNN 154
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ +TA++++ L+ I +P+ + + + F
Sbjct: 155 --------SSTNISTAKNISYLTSLILKTYPEITEITKNPEHTLATGE---KIKNSVEFK 203
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILG-ALDRNTRNKVSASLLSMGFYNKTDR 270
++ + S N V A G+ LI +L + D+ + F N +
Sbjct: 204 ESEKFRVLGLDYSEKNSVTYAYSGNTKLIITVLNQSDDKAAYFEKLQKSYDYLFTNYHYK 263
Query: 271 KKINYIIKDFYQQNLS 286
+ + ++
Sbjct: 264 LALKAGTYTINNEKIT 279
>gi|298717495|ref|YP_003730137.1| beta-lactamase [Pantoea vagans C9-1]
gi|298361684|gb|ADI78465.1| beta-lactamase [Pantoea vagans C9-1]
Length = 292
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 28/211 (13%), Positives = 59/211 (27%), Gaps = 4/211 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
++DT G + + S +K+M + + +L I ISK+
Sbjct: 51 VIDTADGSK-YAWRGNERFPLCSTSKVMAVAAILKKNERDPHLLDKKIHISKSDMVNYNP 109
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV--QHMNNTSKNLGLSAT 150
+ GS M++ + S N + L ++ + + + L
Sbjct: 110 VTRKHIGSYMSVAELSAAALQYSDNAAMNKLLSYLGGPQQATHFARTIGDKDFRLDRHEP 169
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
A + T + L + + ++ ++ A
Sbjct: 170 GLNTAIPGDERDTTTPSAMAESLKKVVLGTALKEEQRAKLSDWMKGNTTGSDSIKAGLPD 229
Query: 211 LGADGMKTGF-TCASGFNIVASAIQGDQSLI 240
KTG S +I + +I
Sbjct: 230 DWIVADKTGSGDYGSTNDIAVIWPKNHAPVI 260
>gi|50096615|gb|AAT70415.1| CTX-M-37 extended-spectrum beta-lactamase [Enterobacter cloacae]
gi|62005106|gb|AAX33264.2| CTX beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|309951213|emb|CBL80619.1| CTX-M-37 beta-lactamase [Kluyvera cryocrescens]
Length = 291
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLHAQTADVQQKLAELEQQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|124021062|gb|ABM88811.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
Length = 290
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|66361080|pdb|1YLW|A Chain A, X-Ray Structure Of Ctx-M-16 Beta-Lactamase
Length = 263
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 65/242 (26%), Gaps = 12/242 (4%)
Query: 33 LLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+D + V+ D + S +K+M A V + +K +L P+ I
Sbjct: 24 LIDTADNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYN 81
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ TMTL + S N + F + + + + L +
Sbjct: 82 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTE 141
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A T L Q+ + A
Sbjct: 142 PTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLP 201
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSM 262
G KTG N +A + L+ V A R +A +++
Sbjct: 202 TSWTAGDKTGSGGYGTTNDIAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAE 261
Query: 263 GF 264
G
Sbjct: 262 GL 263
>gi|28881688|emb|CAD70280.1| class A beta-lactamase CTX-M-28 [Escherichia coli]
gi|71273535|emb|CAJ13561.1| beta-lactamase [Escherichia coli]
gi|151428368|gb|ABS12043.1| CTX-M beta-lactamase [Escherichia coli]
gi|156145812|gb|ABU53682.1| CTX-M-15 beta-lactamase [Escherichia coli]
gi|281335916|gb|ADA62515.1| CTX-M-28 beta-lactamase [synthetic construct]
Length = 291
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|281336000|gb|ADA62557.1| CTX-M-29-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|227018498|gb|ACP18863.1| CTX-M beta-lactamase [Salmonella enterica subsp. enterica serovar
Infantis]
Length = 291
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|18390031|gb|AAL68824.1|AF462634_1 extended-spectrum beta-lactamase CTX-M-3 [Enterobacter cloacae]
Length = 253
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 13/215 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 39 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 96
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 97 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 156
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 157 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 212
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D+ LI V
Sbjct: 213 ASWVVGDKTGSGDYGTTNDIAVIWPKDRAPLILVT 247
>gi|119946899|ref|YP_944579.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Psychromonas ingrahamii 37]
gi|119865503|gb|ABM04980.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Psychromonas ingrahamii 37]
Length = 480
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
++ L + N+ A Y +LD ++AE+ + PASL
Sbjct: 3 KRILCFALFLLPVNLLADQWSALHALLPKGTQLSYLVLDPANNQLLAESNAEILRTPASL 62
Query: 57 TKLMTA 62
KL+TA
Sbjct: 63 QKLLTA 68
>gi|78333|pir||S00464 beta-lactamase (EC 3.5.2.6) class A - Escherichia coli plasmid p453
Length = 265
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 60/221 (27%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 24 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 83
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + ++ F++ + + L T
Sbjct: 84 SEKHLADGMTVGELCAAAITMSDNSAANLLLTAVGGPAGLTAFLRQIGDNVTRLDRWETE 143
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 144 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 203
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 204 WFIADKTG------------AGERGARGIVALLGPNNKAER 232
>gi|315605199|ref|ZP_07880245.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313016|gb|EFU61087.1| conserved hypothetical protein [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 446
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++D TG V+ + P PAS TK +TA+ + L
Sbjct: 81 VVDAQTGQVLLDAEASTPHTPASTTKTLTAFTALAHLDP 119
>gi|225028388|ref|ZP_03717580.1| hypothetical protein EUBHAL_02661 [Eubacterium hallii DSM 3353]
gi|224954287|gb|EEG35496.1| hypothetical protein EUBHAL_02661 [Eubacterium hallii DSM 3353]
Length = 135
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 239 LIAVILGALDRNTRNKVSASLLSMGF---YNKTDRKKINYIIKDFYQQNLSNEVPNISEE 295
LIAV++ R K ASLL GF TD++ + +
Sbjct: 3 LIAVVMACQSSKERVKDCASLLDYGFSLCKIYTDKQPPALSTVPVHNGTKEFISCKYKKN 62
Query: 296 VCTTQKEIINYNTQMKEAKDKESHFIDFEKITLLKNK 332
IN N K+ +++ +K ++
Sbjct: 63 FSYVFTSEINQNNIQKKVVFQKNLSAPIKKNQVIGRL 99
>gi|171188398|gb|ACB41777.1| extended spectrum beta-lactamase CTX-M-82 [Escherichia coli]
Length = 291
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 71/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAVAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTELTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|157812672|gb|ABV81082.1| extended-spectrum beta-lactamase CTX-M-68 [Klebsiella sp.
ARS06-441]
Length = 291
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLD-TNTGHVIAEN 45
+RQF ++ + + A+T + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLHAQTVDVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDDTFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|30908726|gb|AAP35005.1| extended-spectrum beta-lactamase SHV-12 [Serratia liquefaciens]
Length = 286
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 30/265 (11%), Positives = 64/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR ++ + + + + + +D +G + D
Sbjct: 1 MRYIRLLFISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A +
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTHYPG 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ + + ++ + +V KTG
Sbjct: 181 QHGRDPAQAADQPASERPFATAAAAVDGGRRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|254966778|gb|ACT97392.1| CTX-M-15 beta-lactamase [mixed culture bacterium AX_gF1DD01_14]
gi|322227641|gb|ADW95285.1| extended spectrum beta lactamase CTX-M-15 [Enterobacter sp. 247
BMC]
Length = 288
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|157956222|gb|ABW06480.1| extended-spectrum beta-lactamase CTX-M-15 [Klebsiella pneumoniae]
Length = 240
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 13/215 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 26 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 83
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 84 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 143
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 144 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 199
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D+ LI V
Sbjct: 200 ASWVVGDKTGSGDYGTTNDIAVIWPKDRAPLILVT 234
>gi|6225089|sp|P81781|BLC6_VIBCH RecName: Full=Beta-lactamase CARB-6; AltName: Full=Carbenicillinase
6; Flags: Precursor
gi|4377728|gb|AAD19217.1| class A beta-lactamase [Vibrio cholerae]
Length = 288
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 35/254 (13%), Positives = 78/254 (30%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 121 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + +++ + + N +V + ++G +I
Sbjct: 181 IASTLNQLLFGSTLSEASQKKLESWMVNNQVTGNLLRSVLPVKWSIADRSGAGGFGARSI 240
Query: 229 VASAIQGDQSLIAV 242
A ++ I V
Sbjct: 241 TAIVWSEEKKTIIV 254
>gi|166364611|ref|YP_001656884.1| putative beta-lactamase protein [Microcystis aeruginosa NIES-843]
gi|166086984|dbj|BAG01692.1| putative beta-lactamase protein [Microcystis aeruginosa NIES-843]
Length = 393
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 32/278 (11%), Positives = 78/278 (28%), Gaps = 14/278 (5%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
++ + + +D + G A D + AS K+ F +
Sbjct: 110 SLNQKLQALAVKYPKLQA-GALFIDLDNGA-YANFRGDTIFAAASTIKIPILVAFFEDVD 167
Query: 71 EKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K L P+ +K+ T T + V S N +
Sbjct: 168 AGKIRLDEPLVATKDVLASGSGDMQYLGVNKTYTALETATKMNVISDNTATNMLI----- 222
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+ +N + GL++T NA ++ + T+ RD+ + ++ +
Sbjct: 223 KRMGGKEALNQRFQAWGLTSTVINNALPDLEGTNTTSPRDLVTILGKVNQGELLSLRSRD 282
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
++ + KTG + + + + + ++ + R
Sbjct: 283 RLLNIMQETRTRTLLPQGIEKSADIAHKTGDIGSMLADAGIIDMPNGKRYLGAVM--VKR 340
Query: 250 NTRNKVSASLLSM----GFYNKTDRKKINYIIKDFYQQ 283
+ + +L+ + + + Q
Sbjct: 341 PHNDSNARTLIQQISRTAYQHFKWYQTQPAAKPQPVAQ 378
>gi|46309198|emb|CAG25822.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 93 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 213 WFIADKTG------------AGERGARGIVALLGLNNKAER 241
>gi|325560584|gb|ADZ31262.1| beta-lactamase CTX-M-106 [Escherichia coli]
Length = 290
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 40/282 (14%), Positives = 73/282 (25%), Gaps = 24/282 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G +TG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDRTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMG 263
+A + L+ V A R+ +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRHDVLASAARIIAEG 290
>gi|195975933|gb|ABW86620.2| beta-lactamase blaCTX-M [Klebsiella pneumoniae]
Length = 291
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLD-TNTGHVIAEN 45
+RQF ++ + + A+T + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTVDVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|7649306|gb|AAF65843.1| cefotaxime-hydrolyzing beta-lactamase [Escherichia coli]
gi|49823169|gb|AAT68658.1| CTX-M-10 [Klebsiella pneumoniae]
Length = 291
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLD-TNTGHVIAEN 45
+RQF ++ + + A+T + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTVDVQQKLAELEQQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|99082099|ref|YP_614253.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Ruegeria sp. TM1040]
gi|99038379|gb|ABF64991.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Ruegeria sp. TM1040]
Length = 494
Score = 47.7 bits (111), Expect = 0.003, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ + TG V+ D PAS+ K++TA L
Sbjct: 62 VVANARTGQVLESVEGDALLPPASVAKVLTALYALDSLGAGY 103
>gi|273161397|gb|ACZ97625.1| SHV-1 beta-lactamase [Klebsiella pneumoniae]
Length = 262
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 66/258 (25%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ ++A L+ + + +D +G + D + S
Sbjct: 1 IISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 61 FKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 120
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + F++ + + L T A T A A L
Sbjct: 121 NSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLR 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + +V KTG A +
Sbjct: 181 KLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------------AGE 228
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG ++ R
Sbjct: 229 RGARGIVALLGPNNKAER 246
>gi|273161391|gb|ACZ97623.1| SHV-1 beta-lactamase [Klebsiella pneumoniae]
Length = 258
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 66/258 (25%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ ++A L+ + + +D +G + D + S
Sbjct: 2 IISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMST 61
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 62 FKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 121
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + F++ + + L T A T A A L
Sbjct: 122 NSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLR 181
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + +V KTG A +
Sbjct: 182 KLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------------AGE 229
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG ++ R
Sbjct: 230 RGARGIVALLGPNNKAER 247
>gi|255045865|gb|ACU00091.1| SHV-28 beta-lactamase [Klebsiella pneumoniae]
Length = 260
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 35/258 (13%), Positives = 66/258 (25%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ ++A L+ + + +D +G + D + S
Sbjct: 2 IISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMST 61
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 62 FKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 121
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + F++ + + L T A T A A L
Sbjct: 122 NSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLR 181
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + +V KTG A +
Sbjct: 182 KLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG------------AGE 229
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG ++ R
Sbjct: 230 RGARGIVALLGPNNKAER 247
>gi|123217689|gb|ABM73648.1| KLUC-2 [Enterobacter cloacae]
Length = 291
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 40/261 (15%), Positives = 71/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP---YYT-----------LLDTNTG-HVIAEN 45
+RQF ++ A A+T + L+DT G ++
Sbjct: 6 LRQFALLAATVFPLLAGSVSLQAQTLSVEQKLAALEQRSGGRLGVALIDTADGSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L I I K + G +M+L
Sbjct: 64 RGDERFAMCSTSKVMAAAAVLKQSESQHDLLNQRIEIKKGDLTNYNPIAEKHVGRSMSLS 123
Query: 106 NALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + F + + + + L + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAQLGGPQGVTAFARKIGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDAQRAQLVTWMKGNTTGTASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ L+ V
Sbjct: 244 GTTNDIAVIWPKDRAPLVLVT 264
>gi|56159738|gb|AAV80715.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 39/274 (14%), Positives = 70/274 (25%), Gaps = 17/274 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + + + + + + + Y +D +G +A
Sbjct: 1 MRYIRLCLISLIAALPLAVFASPQPLEQIKISESQLAGRVGYVEMDLASGRTLAAWRASE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPLMSTFKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + F++ + + L T A T A
Sbjct: 121 AAITMSDNTAGNLLLKIVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
L + T Q+ + + AV KTG
Sbjct: 181 SMATTLRKLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTGAGERGSRG 240
Query: 228 IVASAIQGDQ--SLIAVILG--ALDRNTRNKVSA 257
IVA + ++ + L A RN+ A
Sbjct: 241 IVALLGPDGKAERIVVIYLRDTAATMAERNQQIA 274
>gi|318062781|ref|ZP_07981502.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces sp. SA3_actG]
Length = 440
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 4/164 (2%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + P L++ E K P +++D +G + N+ PAS+TK+ TA L
Sbjct: 33 ALAGRLDPLLAVDELGKGPSASVVDLTSGEQVYGNHAARAATPASVTKIATAVAALDALG 92
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ T + T + +L+ L ++A +
Sbjct: 93 PDHRIRTRVEKDGHRLVLVGGGDPTLTARAHPGEYASLRTLARRTAEALGTEHGTYTLVY 152
Query: 131 EKKFVQHMNNT----SKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ ++NL + + H AR
Sbjct: 153 DTSRYAGTTRHPIGPNENLAPVTPLIADEGRLDSSDHGPAARGT 196
>gi|261212257|ref|ZP_05926543.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
gi|260838865|gb|EEX65516.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC341]
Length = 481
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTA 62
FL+ + A F + Y L+ D + I + + PAS K++TA
Sbjct: 15 FLLFLPSAHAETQFSSATNKLPVGSRYALLIEDIGSKQTILDLNTHLYYPPASTQKILTA 74
Query: 63 YVV 65
Sbjct: 75 LAA 77
>gi|166850618|gb|ABY91281.1| extended-spectrum beta-lactamase CTX-M-69 [Escherichia coli]
Length = 291
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 43/292 (14%), Positives = 79/292 (27%), Gaps = 34/292 (11%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A D+ LI V A R +A +++ G
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVTYFTQPQPNAESRRDVLASAAKIVTNGL 291
>gi|282866366|ref|ZP_06275411.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces sp. ACTE]
gi|282558762|gb|EFB64319.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces sp. ACTE]
Length = 494
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+ + + P L + ++DT TG + + P PAS K+ T+ S
Sbjct: 116 ALDTVLTPLLKAPGLGTVSAAAVVDTATGEQVYAHGATTPMTPASTVKIATSVAALSA 173
>gi|259014680|gb|ACV88640.1| beta-lactamase CTX-M15 [Escherichia coli]
Length = 249
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 13/215 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 40 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 97
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 98 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 157
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 158 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 213
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D+ LI V
Sbjct: 214 ASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVT 248
>gi|259014678|gb|ACV88639.1| beta-lactamase CTX-M15 [Escherichia coli]
Length = 248
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 13/215 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 40 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 97
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 98 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 157
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 158 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 213
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D+ LI V
Sbjct: 214 ASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVT 248
>gi|157956230|gb|ABW06484.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
Length = 248
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 13/215 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 37 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 94
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 95 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 154
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 155 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 210
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D+ LI V
Sbjct: 211 ASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVT 245
>gi|157956224|gb|ABW06481.1| extended-spectrum beta-lactamase CTX-M-15 [Klebsiella pneumoniae]
Length = 248
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 13/215 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 34 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 91
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 92 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 151
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 152 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 207
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D+ LI V
Sbjct: 208 ASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVT 242
>gi|157956214|gb|ABW06476.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
Length = 267
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 13/215 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 45 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 102
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 103 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 162
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 163 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 218
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D+ LI V
Sbjct: 219 ASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVT 253
>gi|157956208|gb|ABW06473.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
Length = 251
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 13/215 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 37 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 94
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 95 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 154
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 155 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 210
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D+ LI V
Sbjct: 211 ASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVT 245
>gi|19571743|emb|CAD20588.3| beta-lactamase class A [Kluyvera ascorbata]
Length = 291
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWG 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPANHAPLVLVTYFTQPEQKAESRRDVLAAAAKIVTHGF 291
>gi|307544033|ref|YP_003896512.1| beta-lactamase [Halomonas elongata DSM 2581]
gi|307216057|emb|CBV41327.1| beta-lactamase [Halomonas elongata DSM 2581]
Length = 350
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 5/213 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+ DT +G + D + AS K++ + + + L + ++
Sbjct: 107 VTDTGSGR-HWGHREDERFPMASTFKVLACAALLDRVDAGQEELQRRVIYEQDDLVTYSP 165
Query: 93 NSTFKKGST-MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSA 149
+ G MTL + + + S N A + +++ F + + + L
Sbjct: 166 VTKEHVGEPGMTLGSLCEAAMGYSDNSAANMVLKAIGGPSAVTDFTRSLGDDMTRLDRWE 225
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T A T A A L D ++ + + A
Sbjct: 226 TKLNEAIPGDPRDTTTPAAMAADLQALFLGDRLSEESRERLTDWFLGNRTGDARLRAGLP 285
Query: 210 FLGADGMKTGFTCASGFNIVASAI-QGDQSLIA 241
G +TG N VA A + +I
Sbjct: 286 DDWRIGDRTGSGAHGSTNNVAVAWPSDGEPVII 318
>gi|308235340|ref|ZP_07666077.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Gardnerella vaginalis ATCC 14018]
gi|311114322|ref|YP_003985543.1| D-Ala-D-Ala carboxypeptidase 3 (S13) domain-containing protein
[Gardnerella vaginalis ATCC 14019]
gi|310945816|gb|ADP38520.1| D-Ala-D-Ala carboxypeptidase 3 (S13) domain protein [Gardnerella
vaginalis ATCC 14019]
Length = 594
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ D N G +IA + PAS K +TA L
Sbjct: 174 SAVIADAN-GKIIAAKNENLALQPASTMKTLTALAASHVLDMG 215
>gi|68012688|gb|AAY84742.1| extended-spectrum beta-lactamase CTX-M-42 [Escherichia coli]
Length = 291
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTETTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|160948451|emb|CAJ47133.2| beta-lactamase [Klebsiella pneumoniae]
gi|225697595|gb|ACO07070.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 66/265 (24%), Gaps = 25/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D + + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASSRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 181 SMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 232
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 233 ----AGERGARGIVALLGPNNKAER 253
>gi|157956216|gb|ABW06477.1| extended-spectrum beta-lactamase CTX-M-15 [Enterobacter gergoviae]
Length = 242
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/214 (15%), Positives = 57/214 (26%), Gaps = 13/214 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 35 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 92
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 93 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 152
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 153 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 208
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAV 242
G KTG N +A D+ LI V
Sbjct: 209 ASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILV 242
>gi|157956210|gb|ABW06474.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
Length = 244
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/214 (15%), Positives = 57/214 (26%), Gaps = 13/214 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 37 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 94
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 95 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 154
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 155 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 210
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAV 242
G KTG N +A D+ LI V
Sbjct: 211 ASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILV 244
>gi|332664615|ref|YP_004447403.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Haliscomenobacter
hydrossis DSM 1100]
gi|332333429|gb|AEE50530.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Haliscomenobacter
hydrossis DSM 1100]
Length = 448
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 23/161 (14%), Positives = 42/161 (26%), Gaps = 16/161 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKL---------------PYYTLLDTNTGHVIAENYPD 48
F ++ A+ + NIF + + L D N + + D
Sbjct: 11 FFLLFALCLPLNIFGQALTKIQQQALDKLVLQSPIFARHFYGFALYDPNGKLTLFQKDAD 70
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ PAS TK+ T Y LK+ +L + + +
Sbjct: 71 KFFTPASNTKIFTLYTALKVLKDSLPVLRYTKEGAFTIFQGMGNPMFLHPLFAQDSVAWN 130
Query: 109 KLLIVKSA-NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
L K A + + ++ G
Sbjct: 131 FLNQEKGYLAFSASNFKDERFGNGWAWNDFRDDYQAEKGSF 171
>gi|82655100|emb|CAJ19619.1| OKP-B beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 40/267 (14%), Positives = 69/267 (25%), Gaps = 13/267 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPQPLEQIKISESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + F++ + + L T A T A L
Sbjct: 128 NTAGNLLLKIVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPANMATTLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T Q+ + + AV KTG IVA
Sbjct: 188 KLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILG--ALDRNTRNKVSA 257
+ ++ + L A RN+ A
Sbjct: 248 DGKAERIVVIYLRDTAATMAERNQQIA 274
>gi|10946252|gb|AAG24824.1|AF286192_2 beta-lactamase CTX-M-5 [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|2443465|gb|AAC32890.1| beta-lactamase CTX-M-5 [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|6580517|emb|CAB63259.1| class A beta-lactamase KLUA-2 [Kluyvera ascorbata]
Length = 291
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWG 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPANHAPLVLVTYFTQPEQKAESRRDVLAAAAKIVTHGF 291
>gi|157956228|gb|ABW06483.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
Length = 240
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 13/215 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 27 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 84
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 85 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 144
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 145 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 200
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D+ LI V
Sbjct: 201 ASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVT 235
>gi|329769995|ref|ZP_08261391.1| hypothetical protein HMPREF0433_01155 [Gemella sanguinis M325]
gi|328837513|gb|EGF87141.1| hypothetical protein HMPREF0433_01155 [Gemella sanguinis M325]
Length = 399
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 47/303 (15%), Positives = 99/303 (32%), Gaps = 34/303 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-----------KLPYYTLL-DTNTGHVIAENYPD 48
MR + I + ++ +FP L+ A+ ++ + NTG +I++ +
Sbjct: 1 MRFKKISILVMAVAFLFPNLAKADDVFLDNNAISEFSDANSSIVISEYNTGKIISKRGEN 60
Query: 49 HPWNPASLTKL---MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
S+ KL + Y++ LK KK L ITI+K T + +
Sbjct: 61 EKV---SVNKLPNYLALYLLTDDLKNKKTSLDDKITINKGDDVLSKYQITKELTVKDAIF 117
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HY 164
I K+ + + LG + + + +
Sbjct: 118 LLENENSSSLLEAI-----------FTKYNVDVEKANSILGAMSLNNTKLENLENSDSNT 166
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
++A+D+ L+ I ++P+ + + + + + S
Sbjct: 167 SSAKDITFLNSVILKNYPELTEITKNPEYTLSSDEKVTNSVTFKESE---KFRVLGLDYS 223
Query: 225 GFNIVASAIQGDQSLIAVILG-ALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQ 283
G N V A G+ L+ +L + D++ + F N + + +
Sbjct: 224 GKNSVTYAYSGNTKLLVTVLNQSDDKDKFFEKLQKTYEYLFSNYQYKLALKAGTYTINNE 283
Query: 284 NLS 286
N+S
Sbjct: 284 NIS 286
>gi|297192942|ref|ZP_06910340.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
ATCC 25486]
gi|297151569|gb|EDY66561.2| D-alanyl-D-alanine carboxypeptidase [Streptomyces pristinaespiralis
ATCC 25486]
Length = 459
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 20/48 (41%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ + P L+ + P ++D TG + + P PAS K+
Sbjct: 78 LARTLGPLLADSGLGPAPAVCVIDLTTGERLYGKRAEAPMVPASTVKI 125
>gi|294793404|ref|ZP_06758549.1| putative beta-lactamase [Veillonella sp. 6_1_27]
gi|294795223|ref|ZP_06760357.1| putative beta-lactamase [Veillonella sp. 3_1_44]
gi|294454015|gb|EFG22390.1| putative beta-lactamase [Veillonella sp. 3_1_44]
gi|294455835|gb|EFG24200.1| putative beta-lactamase [Veillonella sp. 6_1_27]
Length = 272
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 30/239 (12%), Positives = 73/239 (30%), Gaps = 12/239 (5%)
Query: 23 AETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A + Y L D +IA + + ASL K++ VF + ++ + +
Sbjct: 22 APAGNISYAVLQFDDEEEPTLIAARGENTVHSSASLIKVLIMEYVFHLARTEQLDINDTV 81
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+S+ G L L++ +++IA + ++ ++++N
Sbjct: 82 PLSRTPRVEGGGALQELVGKHSFTYLELCRLMMVLSDNIATNLLITVL-----GMENINA 136
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS----WRIKTDFPQYMHYFQIKGLEIK 196
++ LG+ + +S ++ + Y + +
Sbjct: 137 RAEKLGMDEMELNRMMMDFNALAEGRDNHITAMSLARLYKHIFECRDRDAYGREMWNILG 196
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+++ + KTG + ++L + N R K
Sbjct: 197 RQQFRDILPFYWGEGIRFHHKTGSLDRVEHDGGVIETFRGH-FCFILLMSDIDNDRGKE 254
>gi|94502802|gb|ABF29628.1| beta-lactamase [Klebsiella pneumoniae]
Length = 245
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 4/215 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 19 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 78
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 79 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 138
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 139 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 198
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL 244
KTG + IVA ++ ++ + L
Sbjct: 199 WFIADKTGASERGARGIVALLGPNNKAERIVVIYL 233
>gi|94502809|gb|ABF29632.1| beta-lactamase [Klebsiella pneumoniae]
Length = 244
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 4/215 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 18 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 77
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 78 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 137
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 138 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 197
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL 244
KTG + IVA ++ ++ + L
Sbjct: 198 WFIADKTGASERGARGIVALLGPNNKAERIVVIYL 232
>gi|30749600|pdb|1N9B|A Chain A, Ultrahigh Resolution Structure Of A Class A
Beta-Lactamase: On The Mechanism And Specificity Of The
Extended-Spectrum Shv-2 Enzyme
Length = 265
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 4/215 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 24 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 83
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 84 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 143
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 144 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 203
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL 244
KTG + IVA ++ ++ + L
Sbjct: 204 WFIADKTGASERGARGIVALLGPNNKAERIVVIYL 238
>gi|219920903|emb|CAQ76629.1| beta-lactamase [Klebsiella oxytoca]
Length = 269
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 39/258 (15%), Positives = 71/258 (27%), Gaps = 18/258 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP------------YYTLLD-TNTGHVIAENYPD 48
R+ ++ A+ +L + + L++ + ++ D
Sbjct: 7 RKIAMLAAVPLLLASGALWASTDAIHQKLTDLEKRSGGRLGVALINTADNSQILY--RGD 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M A V + K ++ + I+ + S MTL
Sbjct: 65 ERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITEKHLQSGMTLAELS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F + + + + L + A + T
Sbjct: 125 AATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLNTAIPGDERDTSTP 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L D Q+ + A G KTG
Sbjct: 185 LAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWVVGDKTGAGDYGTT 244
Query: 227 NIVASAIQGDQ-SLIAVI 243
N +A D L+ V
Sbjct: 245 NDIAVIWPEDHAPLVLVT 262
>gi|90019041|gb|ABC18328.3| extended-spectrum beta-lactamase CTX-M-54 [Klebsiella pneumoniae]
Length = 291
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEQTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|300312887|ref|YP_003776979.1| oxacillin hydrolase (class-D beta-lactamase) signal peptide protein
[Herbaspirillum seropedicae SmR1]
gi|300075672|gb|ADJ65071.1| oxacillin hydrolase (class-D beta-lactamase) signal peptide protein
[Herbaspirillum seropedicae SmR1]
Length = 272
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 28/241 (11%), Positives = 61/241 (25%), Gaps = 9/241 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDT-NTGHVIAENYPDHPWNPASLTKL 59
MR+ + A + I + A T + D G ++ + PAS K+
Sbjct: 1 MRK-TRMFAALIAGGIISTAASARTICT---IVADASENGSIVQSGDCTSRFTPASTFKI 56
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ + F + + + S + + +
Sbjct: 57 AISLMGFDAGVLQDEHTPAWPYQPEYPDWGGAAWRQPTDASRWIQYSVVWFSQRVAQQLG 116
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A K G ++ + A +++ ++
Sbjct: 117 ATRFQRYTRDFRYGNQDVSGEPGKRNGTKGAWINSSLRISPLEQI--AFLRRLVNRQLPV 174
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ Y +I + + G+DG V AI+ D+ L
Sbjct: 175 NARAYEMTGRITRITAAPDGWEIHGKTGTGSPGSDGRYDPAHAYGW--FVGWAIKDDRKL 232
Query: 240 I 240
+
Sbjct: 233 V 233
>gi|110590178|pdb|2G2W|A Chain A, Crystal Structure Of The Shv D104k Beta-LactamaseBETA-
Lactamase Inhibitor Protein (Blip) Complex
Length = 265
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 24 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVKYSPV 83
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 84 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 143
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 144 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 203
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 204 WFIADKTG------------AGERGARGIVALLGPNNKAER 232
>gi|219920963|emb|CAQ76659.1| beta-lactamase [Klebsiella oxytoca]
gi|219920981|emb|CAQ76668.1| beta-lactamase [Klebsiella oxytoca]
gi|219920995|emb|CAQ76675.1| beta-lactamase [Klebsiella oxytoca]
Length = 273
Score = 47.3 bits (110), Expect = 0.003, Method: Composition-based stats.
Identities = 39/258 (15%), Positives = 71/258 (27%), Gaps = 18/258 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP------------YYTLLD-TNTGHVIAENYPD 48
R+ ++ A+ +L + + L++ + ++ D
Sbjct: 7 RKIAMLAAVPLLLASGALWASTDAIHQKLTDLEKRSGGRLGVALINTADNSQILY--RGD 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M A V + K ++ + I+ + S MTL
Sbjct: 65 ERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITEKHLQSGMTLAELS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F + + + + L + A + T
Sbjct: 125 AATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLNTAIPGDERDTSTP 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L D Q+ + A G KTG
Sbjct: 185 LAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWVVGDKTGAGDYGTT 244
Query: 227 NIVASAIQGDQ-SLIAVI 243
N +A D L+ V
Sbjct: 245 NDIAVIWPEDHAPLVLVT 262
>gi|213026275|ref|ZP_03340722.1| D-alanyl-D-alanine carboxypeptidase fraction C [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 76
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA-VGTFLGADGMKTGFTCAS 224
TARDMA+L + D P + K + PN N T L DGMKTG T +
Sbjct: 1 TARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTAGA 60
Query: 225 GFNIVASAIQGDQSL 239
G+N+VASA QGD L
Sbjct: 61 GYNLVASATQGDMRL 75
>gi|6979152|gb|AAF34335.1| beta-lactamase SHV-2 variant [Klebsiella pneumoniae]
Length = 260
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 4/215 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 35 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 94
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 95 SEKHLADGMTVGEFCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 154
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 155 LNEAFPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 214
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL 244
KTG + IVA ++ ++ + L
Sbjct: 215 WFIADKTGASERGARGIVALLGPNNKAERIVVIYL 249
>gi|82655078|emb|CAJ19607.1| OKP-A beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 39/269 (14%), Positives = 71/269 (26%), Gaps = 13/269 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPPPLEQITRSESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K + V + + L I + S MT+ I S
Sbjct: 68 FKALLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAATLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + AV KTG IVA
Sbjct: 188 KLLTSHALSDRSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILGAL--DRNTRNKVSASL 259
+ ++ + L RN+ A +
Sbjct: 248 NGKAERIVVIYLRDTPATMAERNQQIAKI 276
>gi|66361078|pdb|1YLP|A Chain A, Atomic Resolution Structure Of Ctx-M-27 Beta-Lactamase
Length = 263
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 38/242 (15%), Positives = 65/242 (26%), Gaps = 12/242 (4%)
Query: 33 LLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+D + V+ D + S +K+M A V + +K +L P+ I
Sbjct: 24 LIDTADNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKHADLVNYN 81
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ TMTL + S N + F + + + + L +
Sbjct: 82 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTE 141
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A T L Q+ + A
Sbjct: 142 PTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLP 201
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSM 262
G KTG N +A + L+ V A R +A +++
Sbjct: 202 TSWTVGDKTGSGGYGTTNDIAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAE 261
Query: 263 GF 264
G
Sbjct: 262 GL 263
>gi|85708858|ref|ZP_01039924.1| Putative beta-lactamase [Erythrobacter sp. NAP1]
gi|85690392|gb|EAQ30395.1| Putative beta-lactamase [Erythrobacter sp. NAP1]
Length = 374
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ D TG + E D S+TKL A S + + LT + I ++
Sbjct: 75 VQDVETGE-LYEFNGDELLPQQSVTKLWVAMAALSQVDQGDLNLTERVRIGRD 126
>gi|302535222|ref|ZP_07287564.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces sp. C]
gi|302444117|gb|EFL15933.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces sp. C]
Length = 484
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+++D TG V+ E+ P PAS K+
Sbjct: 110 PALGTARGASVIDVATGQVLYESGAGDPMTPASTIKI 146
>gi|281335906|gb|ADA62510.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|27372230|dbj|BAC53608.1| b-lactamase FEC-1 [Escherichia coli]
Length = 291
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 13/215 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 114 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 173
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 174 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 229
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D+ LI V
Sbjct: 230 ASWVVGDKTGSGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|329963720|ref|ZP_08301166.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides fluxus YIT 12057]
gi|328527730|gb|EGF54722.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides fluxus YIT 12057]
Length = 482
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 21/87 (24%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK--------------------LPYYT-LLDTNTG 39
M++ L+ + +++ + + + D G
Sbjct: 1 MKRILLQLFLSVCLLSLSARNADNADNRTGTLSSRLDTLIKYQLPSGSNVAISVYDLTAG 60
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D PAS KL+T
Sbjct: 61 KPLYSYQADKLSRPASTMKLLTTITAL 87
>gi|283784953|ref|YP_003364818.1| Beta-lactamase [Citrobacter rodentium ICC168]
gi|282948407|emb|CBG87995.1| Beta-lactamase [Citrobacter rodentium ICC168]
Length = 295
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 66/237 (27%), Gaps = 11/237 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + A+L I I K +
Sbjct: 60 ADNSQLLY--RGDERFAMCSTSKVMVAAAVLKQSETRPAILQQKIPIKKADLTNWNPVTE 117
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
G MTL + S N + L K F + +T+ L
Sbjct: 118 KYVGKEMTLAELSAATLQYSDNTAMNKLIAHLGGPGKVTAFARSTGDTTFRLDRQEPELN 177
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + + L D Q+ + A
Sbjct: 178 TAIPGDERDTSSPRAMADSLRNLTLGDALADTQRAQLVAWLKGNTTGGQSIRAGVPAHWV 237
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMG 263
G KTG N +A ++ LI V A R +A +++ G
Sbjct: 238 VGDKTGAGEYGTTNDIAIIWPENRPPLILVTYFTQRQQDAKWRKDVLAAAAKIVTEG 294
>gi|281335926|gb|ADA62520.1| CTX-M-62-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|255524822|ref|ZP_05391772.1| beta-lactamase [Clostridium carboxidivorans P7]
gi|296188641|ref|ZP_06857029.1| hypothetical protein CLCAR_4177 [Clostridium carboxidivorans P7]
gi|255511489|gb|EET87779.1| beta-lactamase [Clostridium carboxidivorans P7]
gi|296046905|gb|EFG86351.1| hypothetical protein CLCAR_4177 [Clostridium carboxidivorans P7]
Length = 259
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 29/200 (14%), Positives = 57/200 (28%), Gaps = 3/200 (1%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
AS+ KL F+ K K L I I + S ++
Sbjct: 33 NTHEVVPSASIIKLFIMSEAFNKNKMGKLNLHEIIKIDNDKKVPFSIVSLLNSVEQYSVK 92
Query: 106 NALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ + L+I++S N + + F++ + LG F A +Y
Sbjct: 93 DLITLMIIQSDNTATNVLIDFLGIDNINNFIKERGFKNTVLGRKMMDFEGAKAGKD--NY 150
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
T+A D+ ++ ++ + + + KTG
Sbjct: 151 TSAYDVFSFLEKLYNHNLVGEEEDKLMIDILSHQLDFSMMRMDMLDDLKIAHKTGDLNCL 210
Query: 225 GFNIVASAIQGDQSLIAVIL 244
+ + I V+
Sbjct: 211 KHDAGIVYSEKVGDYIFVMF 230
>gi|146771515|gb|ABQ45409.1| extended-spectrum beta-lactamase CTX-M-66 [Proteus mirabilis]
Length = 291
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 13/215 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 114 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 173
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 174 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 229
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D+ LI V
Sbjct: 230 ASWVVGDKTGSGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|66932799|gb|AAY58237.1| extended-spectrum beta-lactamase CTX-M-13 [Escherichia coli]
Length = 283
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 65/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LDT-NTGHVIAENYPDHP 50
F + +L P + + L +DT + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTKDNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 249 IAVIWPQGRAPLVLVT 264
>gi|58119473|gb|AAW65394.1| extended-spectrum beta-lactamase CTX-M-13 [Proteus mirabilis]
Length = 278
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 65/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LDT-NTGHVIAENYPDHP 50
F + +L P + + L +DT + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTKDNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 249 IAVIWPQGRAPLVLVT 264
>gi|18656800|gb|AAL77985.1| extended-spectrum beta-lactamase CTX-M-13 [Enterobacter cloacae]
Length = 264
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 65/256 (25%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LDT-NTGHVIAENYPDHP 50
F + +L P + + L +DT + V+ D
Sbjct: 6 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTKDNTQVLY--RGDER 63
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 64 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 123
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 124 ALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 183
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 184 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 243
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 244 IAVIWPQGRAPLVLVT 259
>gi|17127727|gb|AAK08976.1| extended-spectrum beta-lactamase [Kluyvera cryocrescens]
Length = 291
Score = 47.3 bits (110), Expect = 0.004, Method: Composition-based stats.
Identities = 40/261 (15%), Positives = 71/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP---YYT-----------LLDTNTG-HVIAEN 45
+RQF ++ A A+T + L+DT G ++
Sbjct: 6 LRQFALLAATVFPLLAGSVSLQAQTLSVEQKLAALEQRSGGRLGVALIDTADGSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L I I K + G +M+L
Sbjct: 64 RGDERFAMCSTSKVMAAAAVLKQSESQHDLLNQRIEIKKGDLTNYNPIAEKHVGGSMSLS 123
Query: 106 NALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + F + + + + L + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAQLGGPQGVTAFARKIGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDAQRAQLVTWMKGNTTGTASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ L+ V
Sbjct: 244 GTTNDIAVIWPKDRAPLVLVT 264
>gi|281335972|gb|ADA62543.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|259120754|gb|ACV92002.1| extended spectrum beta-lactamase CTX-M-71 [Klebsiella pneumoniae]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 38/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 -FTCASGFNIVASAIQGDQSLIAVI 243
+ +I + LI V
Sbjct: 240 SCGYGTTNDIAVIWPKDRAPLILVT 264
>gi|56463237|gb|AAV91760.1| beta-lactamase SHV [Escherichia coli]
Length = 248
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 32/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ + + + L I +
Sbjct: 20 MDLASGRTLTAWRADERFPMMSTFKVVLCGAMLARVDAGDEQLERKIHYRQQDLVDYSPV 79
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 80 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 139
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 140 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 199
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 200 WFIADKTG------------ASKRGARGIVALLGPNNKAER 228
>gi|333025317|ref|ZP_08453381.1| hypothetical protein STTU_2821 [Streptomyces sp. Tu6071]
gi|332745169|gb|EGJ75610.1| hypothetical protein STTU_2821 [Streptomyces sp. Tu6071]
Length = 541
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+ + P L++ E K P +++D +G + N+ PAS+TK+ TA
Sbjct: 122 ALAGRLDPLLAVDELGKGPSASVVDLTSGEQVYGNHAARAATPASVTKIATAVAALDA 179
>gi|281335950|gb|ADA62532.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|281335946|gb|ADA62530.1| CTX-M-36-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|78184292|ref|YP_376727.1| beta-lactamase family protein [Synechococcus sp. CC9902]
gi|78168586|gb|ABB25683.1| possible beta-lactamase family protein [Synechococcus sp. CC9902]
Length = 388
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 28/259 (10%), Positives = 66/259 (25%), Gaps = 27/259 (10%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ ++ Y L+ + G A+ + + P AS K V + +
Sbjct: 119 QAATQPDLQVSAYMLI-LDDGRF-AQMHANRPMPAASSIKTPILLAVLERIDQGTLQWNE 176
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
P+T++K + T + +++ +++ A + + +
Sbjct: 177 PLTLTKELVGGGAGWMASRPLGTRFPTYEVATEMIRVSDNSATNLMIARAGGQDAINARF 236
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK-GLEIKG 197
+ + + T + D + + E+
Sbjct: 237 QALDL------PATVVNNWLPDLDGTNTTSARDLSRAIALVDSGESLAPRSRDLFREVMA 290
Query: 198 KKYPNTNWAVGTFLGADG-----------------MKTGFTCASGFNIVASAIQGDQSLI 240
NT G G G KTG + + + + +
Sbjct: 291 TSVTNTLLPTGLMRGLGGAQGAPDSALARKGYRVFNKTGDIGTAYADAGLIELPDGRRAV 350
Query: 241 AVIL-GALDRNTRNKVSAS 258
A L + R+
Sbjct: 351 AGFLVKGPFNDPRSTEMIR 369
>gi|169839591|ref|ZP_02872779.1| Serine-type D-Ala-D-Ala carboxypeptidase [candidate division TM7
single-cell isolate TM7a]
Length = 61
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
+TN +G G DG+KTG+ A+G NIV +A +GD +IAVILG+ RN + A
Sbjct: 1 MTSTNTLLGNVQGVDGLKTGYHDAAGSNIVLTANRGDDRMIAVILGSNHAKDRNAIGAR 59
>gi|281336004|gb|ADA62559.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|56966062|pdb|1TDG|A Chain A, Complex Of S130g Shv-1 Beta-Lactamase With Tazobactam
gi|56966063|pdb|1TDL|A Chain A, Structure Of Ser130gly Shv-1 Beta-Lactamase
Length = 265
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 32/221 (14%), Positives = 57/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 24 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 83
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I N A + F++ + + L T
Sbjct: 84 SEKHLADGMTVGELCAAAITMGDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 143
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 144 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 203
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 204 WFIADKTG------------AGERGARGIVALLGPNNKAER 232
>gi|153819584|ref|ZP_01972251.1| penicillin-binding protein 6 [Vibrio cholerae NCTC 8457]
gi|126509866|gb|EAZ72460.1| penicillin-binding protein 6 [Vibrio cholerae NCTC 8457]
Length = 127
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 13/86 (15%), Positives = 22/86 (25%), Gaps = 3/86 (3%)
Query: 250 NTRNKVSASLLSMGFYNKTDRKKINY---IIKDFYQQNLSNEVPNISEEVCTTQKEIINY 306
+R S LLS GF I NEV S + +
Sbjct: 1 ESREAESKQLLSYGFRFYETVTPHQKDTVIQNQRLWYGDKNEVALGSADTVYLTLPRSDV 60
Query: 307 NTQMKEAKDKESHFIDFEKITLLKNK 332
+ ++ K ++ +
Sbjct: 61 KKLNAVIQLDQNLEAPIAKGDVVGSI 86
>gi|46277640|gb|AAS87022.1| beta-lactamase PLA-3 [Raoultella planticola]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 71/232 (30%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G ++A D + S K++ V S + + L I +
Sbjct: 45 LDLASGQLLAGYRSDERFPMMSTFKVLLCGAVLSRVDAGEEQLDRRIHYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ +T+ I S N A + +L + F++H + + L T
Sbjct: 105 TEKHLTDGLTVGELCAAAITLSDNTAANLLLTTLGGPQGLTSFLRHSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ ++ K +V
Sbjct: 165 LNEARPGDVRDTTTPQAMARTLRNLLTGRVLSSASQQQLQRWMVEDKVAGPLLRSVLPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVILGAL--DRNTRNKVSASL 259
KTG I+A+ + ++ + L + RNK A++
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGKAARIVVIYLTGPPATMDERNKQIAAI 276
>gi|281335932|gb|ADA62523.1| CTX-M-62-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|144954337|gb|ABP04245.1| CTX-M-62 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
gi|281335924|gb|ADA62519.1| CTX-M-62 beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|281335940|gb|ADA62527.1| CTX-M-62-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|281336010|gb|ADA62562.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|281335900|gb|ADA62507.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|323710406|gb|ADY02604.1| beta-lactamase blaSHV [Shigella sonnei]
Length = 239
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 31 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 90
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 91 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 150
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 151 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 210
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 211 WFIADKTG------------AGERGARGIVALLGPNNKAER 239
>gi|323710378|gb|ADY02590.1| beta-lactamase SHV [Shigella dysenteriae 2a]
Length = 239
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 31 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 90
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 91 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 150
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 151 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 210
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 211 WFIADKTG------------AGERGARGIVALLGPNNKAER 239
>gi|273161409|gb|ACZ97629.1| SHV-1 beta-lactamase [Klebsiella pneumoniae]
Length = 257
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 35 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 94
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 95 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 154
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 155 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 214
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 215 WFIADKTG------------AGERGARGIVALLGPNNKAER 243
>gi|273161394|gb|ACZ97624.1| SHV-1 beta-lactamase [Klebsiella pneumoniae]
Length = 249
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 27 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 86
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 87 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 146
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 147 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 206
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 207 WFIADKTG------------AGERGARGIVALLGPNNKAER 235
>gi|218091985|emb|CAP58289.1| beta-lactamase [Klebsiella pneumoniae]
gi|223635895|emb|CAQ03505.1| beta-lactamase [Klebsiella pneumoniae]
Length = 299
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 58 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 117
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 118 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 177
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 178 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 237
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 238 WFIADKTG------------AGERGARGIVALLGPNNKAER 266
>gi|197335653|ref|YP_002155898.1| beta-lactamase [Vibrio fischeri MJ11]
gi|197317143|gb|ACH66590.1| beta-lactamase [Vibrio fischeri MJ11]
Length = 283
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 32/252 (12%), Positives = 70/252 (27%), Gaps = 11/252 (4%)
Query: 1 MRQFLVIIAMAMLSN-----IFPFLSIAETNKLPYYT---LLDTNTGHVIAENYPDHPWN 52
M+ + + +L+N A Y +L+T T A D +
Sbjct: 1 MKIKPFLFGLIVLANNAIAGSLTQNIEAIELSSGGYIGVSVLNTETNKTWAYK-GDQRFP 59
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K + + +I+K + G+ +T A + +
Sbjct: 60 MMSTFKTLACAKMLYDSSVGGIDKYKTTSITKEQIMPWSPVTEPLIGNMITTQKACEATM 119
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ S N A + + +F++ M +T L + + T
Sbjct: 120 LMSDNTAANIVLNEIGGPSSLTQFLRAMGDTKTRLDRIEPELNESKNGDKRDTTTPVAMS 179
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L+ + + +K + K ++ + ++G I A
Sbjct: 180 QTLNALLFGNTLNPQDEQTLKSWMMNNKVSDPLLRSILPNDWSIADRSGAGGFGSRGITA 239
Query: 231 SAIQGDQSLIAV 242
+ I +
Sbjct: 240 AIWNDKHQPIII 251
>gi|46309190|emb|CAG25818.1| beta-lactamase [Klebsiella pneumoniae]
gi|46309200|emb|CAG25823.1| beta-lactamase [Klebsiella pneumoniae]
gi|46309202|emb|CAG25824.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 93 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 213 WFIADKTG------------AGERGARGIVALLGPNNKAER 241
>gi|46309192|emb|CAG25819.1| beta-lactamase [Klebsiella pneumoniae]
gi|46309204|emb|CAG25825.1| beta-lactamase [Klebsiella pneumoniae]
gi|46309206|emb|CAG25826.1| beta-lactamase [Klebsiella pneumoniae]
gi|46309208|emb|CAG25827.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 93 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 213 WFIADKTG------------AGERGARGIVALLGPNNKAER 241
>gi|5107689|pdb|1SHV|A Chain A, Structure Of Shv-1 Beta-Lactamase
gi|40889241|pdb|1ONG|A Chain A, Shv-1 Beta-Lactamase With A Penem Inhibitor
gi|55669552|pdb|1Q2P|A Chain A, Shv-1 Class A Beta-Lactamase Complexed With Penem
Way185229
gi|55670455|pdb|1VM1|A Chain A, Structure Of Shv-1 Beta-Lactamase Inhibited By Tazobactam
gi|110590176|pdb|2G2U|A Chain A, Crystal Structure Of The Shv-1 Beta-LactamaseBETA-
Lactamase Inhibitor Protein (Blip) Complex
gi|118137873|pdb|2H5S|A Chain A, Sa2-13 Penam Sulfone Complexed To Wt Shv-1 Beta-Lactamase
gi|189096171|pdb|3C4O|A Chain A, Crystal Structure Of The Shv-1 Beta-LactamaseBETA-
Lactamase Inhibitor Protein (Blip) E73mS130KS146M
COMPLEX
gi|189096173|pdb|3C4P|A Chain A, Crystal Structure Of The Shv-1 Beta-LactamaseBETA-
Lactamase Inhibitor Protein (Blip) E73m Complex
gi|208435576|pdb|2ZD8|A Chain A, Shv-1 Class A Beta-Lactamase Complexed With Meropenem
gi|312597333|pdb|3MKE|A Chain A, Shv-1 Beta-Lactamase Complex With Lp06
gi|312597334|pdb|3MKF|A Chain A, Shv-1 Beta-Lactamase Complex With Gb0301
gi|312597359|pdb|3MXR|A Chain A, Shv-1 Beta-Lactamase Complex With Compound 1
gi|312597360|pdb|3MXS|A Chain A, Shv-1 Beta-Lactamase Complex With Compound 2
Length = 265
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 24 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 83
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 84 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 143
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 144 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 203
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 204 WFIADKTG------------AGERGARGIVALLGPNNKAER 232
>gi|41079307|gb|AAR99493.1| extended-spectrum beta-lactamase CTX-M-34 [Escherichia coli]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 38/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLD-TNTGHVIAEN 45
+RQF ++ + + A+T + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTVDVQQKLAELEQQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 -FTCASGFNIVASAIQGDQSLIAVI 243
+ +I + LI V
Sbjct: 240 SCDYGTTNDIAVIWPKDRAPLILVT 264
>gi|281335952|gb|ADA62533.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|281335964|gb|ADA62539.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|90408305|ref|ZP_01216470.1| penicillin-binding protein 4 precursor (PBP-4) [Psychromonas sp.
CNPT3]
gi|90310606|gb|EAS38726.1| penicillin-binding protein 4 precursor (PBP-4) [Psychromonas sp.
CNPT3]
Length = 471
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA---ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLT 57
M + LV + + Y ++D T + ++ + PAS+
Sbjct: 1 MYKILVSFFFCSTLWANEWQDLERFLPPGTQLSYLVVDAATQKTVVSHHANTLRTPASVQ 60
Query: 58 KLMTAYVV 65
K++TA
Sbjct: 61 KVLTALAA 68
>gi|281335944|gb|ADA62529.1| CTX-M-62-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.004, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|167763974|ref|ZP_02436101.1| hypothetical protein BACSTE_02357 [Bacteroides stercoris ATCC
43183]
gi|167698090|gb|EDS14669.1| hypothetical protein BACSTE_02357 [Bacteroides stercoris ATCC
43183]
Length = 482
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 21/87 (24%)
Query: 1 MRQFLVI---IAMAMLSNIFPFLSIAETNKLPYYTL------------------LDTNTG 39
MR++ + + + ++ + P I+ L D
Sbjct: 7 MRKYCLFPIVLILTLIPCVLPAQGISPETNSLSSQLDTLIKYQLPAGSNVSVSAYDLTAN 66
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVF 66
V+ + D PAS KL+T
Sbjct: 67 KVLYDYQADKLSRPASTMKLLTTITAL 93
>gi|126030588|pdb|2H0T|A Chain A, Crystal Structure Of The M69v E166a Double Mutant Of Shv-1
B-Lactamase Complexed To Clavulanic Acid
gi|126030589|pdb|2H0Y|A Chain A, Crystal Structure Of The M69v E166a Double Mutant Of Shv-1
B-Lactamase Complexed To Sulbactam
gi|126030590|pdb|2H10|A Chain A, Crystal Structure Of The M69v E166a Double Mutant Of Shv-1
B-Lactamase Complexed To Tazobactam
Length = 265
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 59/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 24 MDLASGRTLTAWRADERFPMVSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 83
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L AT
Sbjct: 84 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWATE 143
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 144 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 203
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 204 WFIADKTG------------AGERGARGIVALLGPNNKAER 232
>gi|216700341|ref|YP_002332251.1| extended-spectrum beta-lactamase CTX-M-53 [Salmonella enterica
subsp. enterica serovar Westhampton]
gi|82393853|gb|ABB72225.1| extended-spectrum beta-lactamase CTX-M-53 [Salmonella enterica
subsp. enterica serovar Westhampton]
Length = 291
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLD-TNTGHVIAEN 45
+RQF ++ + + A+T + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTVDVQQKLAELEQQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI VI
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVI 264
>gi|313510880|gb|ADR66515.1| beta-lactamase CTX-M-79 [Escherichia coli]
Length = 288
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 44/293 (15%), Positives = 80/293 (27%), Gaps = 34/293 (11%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 2 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 59
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 60 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 119
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 120 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 179
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 180 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 235
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGFY 265
N +A D+ LI V A R +A +++ G Y
Sbjct: 236 SGGYGTTNDIAVIWPKDRAPLILVTYFTQPQPKAESRRDVLASAAKIVTNGLY 288
>gi|121495529|emb|CAL80726.1| beta-lactamase CTX-M-60 [Klebsiella pneumoniae]
Length = 291
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 73/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVII--AMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ A+ +L P + + L++ + ++
Sbjct: 6 LRQFTLMATAAVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + ++L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPSLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|46562014|gb|AAT01223.1| beta-lactamase SHV-53 [Klebsiella pneumoniae]
Length = 242
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 33/242 (13%), Positives = 62/242 (25%), Gaps = 9/242 (3%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ ++A L+ + + + +D +G + D + S
Sbjct: 1 IISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMMST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 61 FKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 120
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + F++ + + L T A T A A L
Sbjct: 121 NSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPASMAATLR 180
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ + Q+ + + +V KTG IVA
Sbjct: 181 KLLISQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTGAGERGARGIVALLGP 240
Query: 235 GD 236
+
Sbjct: 241 NN 242
>gi|84515936|ref|ZP_01003297.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Loktanella vestfoldensis SKA53]
gi|84510378|gb|EAQ06834.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Loktanella vestfoldensis SKA53]
Length = 490
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 18 PFLSIAETNKLPYYT-------LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ ++ L D TG V+ P PAS+TK +TA
Sbjct: 38 SPRAALDSIVARAGISGQVGVALGDPATGEVLETYNAAAPLPPASVTKAVTALYALE 94
>gi|281335970|gb|ADA62542.1| CTX-M-28-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|119494566|ref|ZP_01624704.1| Penicillin-binding protein, transpeptidase [Lyngbya sp. PCC 8106]
gi|119452098|gb|EAW33308.1| Penicillin-binding protein, transpeptidase [Lyngbya sp. PCC 8106]
Length = 478
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 42/243 (17%), Positives = 78/243 (32%), Gaps = 10/243 (4%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
I K P L+D +TG + + + AS K+ F + E K
Sbjct: 201 ILALTPENSDLK-PGILLVDLDTGG-YVDINSESAFAAASTIKVPILVAFFQAVDEGKIS 258
Query: 76 LTTPITIS-KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
L +T+ ++ + G+ T +IV S N + E L
Sbjct: 259 LNEVLTMEGQHIAGGSGDMQYQPSGTEYTALETATKMIVISDNTATNMLIERL-----GG 313
Query: 135 VQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLE 194
+ +N + GL T + ++ + TT +D+ L + +
Sbjct: 314 AEFINQKFLDWGLHNTVIRDVLPDLRGTNKTTPKDLVNL-LTQLNQGGLVSMKSRDRIFR 372
Query: 195 IKGKKYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN 253
I K ++ A G GA KTG + ++ + + + +L +
Sbjct: 373 IMEKTENDSLLASGLGRGATIAHKTGNLKSVSGDVGLIDLPNGKRYLLAVLVERNDEDSA 432
Query: 254 KVS 256
S
Sbjct: 433 AES 435
>gi|82655094|emb|CAJ19616.1| OKP-B beta-lactamase [Klebsiella pneumoniae]
gi|82655096|emb|CAJ19617.1| OKP-B beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 40/267 (14%), Positives = 69/267 (25%), Gaps = 13/267 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPQPLEQIKISESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + F++ + + L T A T A L
Sbjct: 128 NTAGNLLLKIVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMATTLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T Q+ + + AV KTG IVA
Sbjct: 188 KLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILG--ALDRNTRNKVSA 257
+ ++ + L A RN+ A
Sbjct: 248 DGKAERIVVIYLRDTAATMAERNQQIA 274
>gi|327404042|ref|YP_004344880.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Fluviicola taffensis DSM 16823]
gi|327319550|gb|AEA44042.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Fluviicola taffensis DSM 16823]
Length = 493
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
Query: 1 MRQFLVIIAMA-----------MLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPD 48
+R F + I + + I F S A +T +D + G ++A P
Sbjct: 8 LRIFAIGILFFAGKNVGFSQNSIQTAIDAFSSNAYFANASISFTAMDCSNGQILASKNPT 67
Query: 49 HPWNPASLTKLMTAYVVFS 67
+PAS TKL F
Sbjct: 68 LSLSPASTTKLFATATAFQ 86
>gi|281335998|gb|ADA62556.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 36/261 (13%), Positives = 73/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|82655092|emb|CAJ19615.1| OKP-B beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 40/267 (14%), Positives = 69/267 (25%), Gaps = 13/267 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPQPLEQIKISESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + F++ + + L T A T A L
Sbjct: 128 NSAGNLLLKIVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMATTLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T Q+ + + AV KTG IVA
Sbjct: 188 KLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILG--ALDRNTRNKVSA 257
+ ++ + L A RN+ A
Sbjct: 248 DGKAERIVVIYLRDTAATMAERNQQIA 274
>gi|282849999|ref|ZP_06259381.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
gi|282580188|gb|EFB85589.1| conserved hypothetical protein [Veillonella parvula ATCC 17745]
Length = 272
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 30/239 (12%), Positives = 73/239 (30%), Gaps = 12/239 (5%)
Query: 23 AETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A + Y L D +IA + + ASL K++ VF + ++ + +
Sbjct: 22 APAGNISYAVLQFDDEEEPTLIAARGENTVHSSASLIKVLIMEYVFHLARTEQLDINDTV 81
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+S+ G L L++ +++IA + ++ ++++N
Sbjct: 82 PLSRTPRVEGGGALQELVGKHSFTYLELCRLMMVLSDNIATNLLITVL-----GMENINA 136
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS----WRIKTDFPQYMHYFQIKGLEIK 196
++ LG+ + +S ++ + Y + +
Sbjct: 137 RAEKLGVDEMELNRMMMDFNALAEGRDNHITAMSLARLYKHIFECRDRDAYGREMWNILG 196
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
+++ + KTG + ++L + N R K
Sbjct: 197 RQQFRDILPFYWGEGIRFHHKTGSLDRVEHDGGVIETFRGH-FCFILLMSDIDNDRGKE 254
>gi|257067598|ref|YP_003153853.1| beta-lactamase class A [Brachybacterium faecium DSM 4810]
gi|256558416|gb|ACU84263.1| beta-lactamase class A [Brachybacterium faecium DSM 4810]
Length = 273
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ A + LLD GHV++ P+ AS KL ++ L+
Sbjct: 4 PTAAAPDEAAVSHCLLDVE-GHVLSAAGAARPYYAASTIKLHVLVAALRAAEQGMLDLSA 62
Query: 79 PITISKNASEYPPS 92
+ ++
Sbjct: 63 QVPATRTFRGADGR 76
>gi|5001722|gb|AAD37116.1|AF123246_1 chromosomic class A beta-lactamase [Stenotrophomonas maltophilia]
Length = 304
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 32/213 (15%), Positives = 60/213 (28%), Gaps = 2/213 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K M V S + L T + I++
Sbjct: 62 VLNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEKDLLSYAP 121
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 122 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSVTRNDRNEP 181
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A + L+ + Q Q I + A
Sbjct: 182 DVNLFAKGDPRDTTSPAAMASSLARFAVGNGLQPASRQQFTDWLIDNQTGDACLRAGLGK 241
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
G KTG N +A + V+
Sbjct: 242 RWRVGDKTGSNGDDTRNDIAVLWPHAGGAVWVV 274
>gi|6979150|gb|AAF34334.1| beta-lactamase SHV-2 variant [Klebsiella pneumoniae]
Length = 260
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 4/215 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 35 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 94
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 95 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 154
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 155 LNEAFPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 214
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL 244
KTG + IVA ++ ++ + L
Sbjct: 215 WFIADKTGASERGARGIVALLGPNNKAERIVVIYL 249
>gi|120598793|ref|YP_963367.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella sp. W3-18-1]
gi|120558886|gb|ABM24813.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella sp. W3-18-1]
Length = 504
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 14 SNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + ++ L LD ++ D PAS K++TA + L +
Sbjct: 37 TTLSQSIADINPRHSQTALLALDLANNQILYSQQADTLLVPASTQKILTAVTAMAELGTE 96
Query: 73 KAMLTTPI 80
+T
Sbjct: 97 FRYVTELW 104
>gi|146293130|ref|YP_001183554.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella putrefaciens CN-32]
gi|145564820|gb|ABP75755.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella putrefaciens CN-32]
Length = 504
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 14 SNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + ++ L LD ++ D PAS K++TA + L +
Sbjct: 37 TTLSQSIADINPRHSQTALLALDLANNQILYSQQADTLLVPASTQKILTAVTAMAELGTE 96
Query: 73 KAMLTTPI 80
+T
Sbjct: 97 FRYVTELW 104
>gi|57339494|gb|AAW49734.1| penicillinase OKP-6 [Klebsiella pneumoniae]
gi|197724707|emb|CAP12355.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 40/267 (14%), Positives = 70/267 (26%), Gaps = 13/267 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPQPLEQIKISESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMATTLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T Q+ + + AV KTG IVA
Sbjct: 188 KLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 247
Query: 235 GDQ--SLIAVILG--ALDRNTRNKVSA 257
+ ++ + L A RN+ A
Sbjct: 248 DGKAERIVVIYLRDTAATMAERNQQIA 274
>gi|8469130|sp|O65976|BLC6_SALTY RecName: Full=Beta-lactamase CTX-M-6; AltName: Full=Cefotaximase 6;
Flags: Precursor
gi|3021579|emb|CAA06312.1| CTX-M-7 [Salmonella typhimurium]
Length = 291
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 41/288 (14%), Positives = 80/288 (27%), Gaps = 26/288 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLD-TNTGHVIAEN 45
+R+ ++ + + A+ N + L++ + ++
Sbjct: 6 IRRSMLTVMATLPLLFSSATLHAQANSVQQQLEALEKSSGGRLGVALINTADNSQILYV- 64
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + K +L + I + + TMTL
Sbjct: 65 -ADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIRASDLVNYNPIAEKHVNGTMTLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + L +K F + + + + L + +A
Sbjct: 124 QLGAGALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLNSAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
T L Q+ + A G KTG
Sbjct: 184 TTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWGVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ GF
Sbjct: 244 GTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDVLAAAAKIVTHGF 291
>gi|85706437|ref|ZP_01037531.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseovarius sp. 217]
gi|85669210|gb|EAQ24077.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseovarius sp. 217]
Length = 508
Score = 46.9 bits (109), Expect = 0.005, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
Y + D TG V+ + PAS+TK +TA
Sbjct: 74 GYAVADARTGQVLEASEGTTGLPPASVTKAVTALYALDA 112
>gi|231639|sp|Q01166|BLAC_YEREN RecName: Full=Beta-lactamase; AltName: Full=Penicillinase; Flags:
Precursor
gi|48814|emb|CAA40357.1| beta-lactamase [Yersinia enterocolitica]
gi|318605692|emb|CBY27190.1| beta-lactamase [Yersinia enterocolitica subsp. palearctica Y11]
gi|330863648|emb|CBX73755.1| beta-lactamase [Yersinia enterocolitica W22703]
gi|228208|prf||1718314A beta lactamase I
Length = 294
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 36/263 (13%), Positives = 72/263 (27%), Gaps = 22/263 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP----------------YYTLLDTNTG-HVIA 43
+R+ L++ + + F + A +++T G ++
Sbjct: 6 LRRSLLLAGITLPLVSFALPAWANALPASVDKQLAELERNANGRLGVAMINTGNGTKILY 65
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
+ S K M A V + + +L I ++ + MT
Sbjct: 66 --RAAQRFPFCSTFKFMLAAAVLDQSQSQPNLLNKHINYHESDLLSYAPITRKNLAHGMT 123
Query: 104 LDNALKLLIVKSANDIAVAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ I S N A + + L +F + + + L A
Sbjct: 124 VSELCAATIQYSDNTAANLLIKELGGLAAVNQFARSIGDQMFRLDRWEPDLNTARPNDPR 183
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF- 220
T A A ++ + D + Q+ T A G KTG
Sbjct: 184 DTTTPAAMAASMNKLVLGDALRPAQRSQLAVWLKGNTTGDATIRAGAPTDWIVGDKTGSG 243
Query: 221 TCASGFNIVASAIQGDQSLIAVI 243
+ +I ++ V+
Sbjct: 244 DYGTTNDIAVLWPTKGAPIVLVV 266
>gi|261872208|gb|ACY02886.1| CTX-M-90 extended-spectrum beta-lactamase [Proteus mirabilis]
Length = 278
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 36/256 (14%), Positives = 63/256 (24%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAVAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 249 IAVIWPQGRAPLVLVT 264
>gi|260576409|ref|ZP_05844399.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
4)-like protein [Rhodobacter sp. SW2]
gi|259021292|gb|EEW24598.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
4)-like protein [Rhodobacter sp. SW2]
Length = 323
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
++ ++ A + + D TG V+ PD PAS+ K +T+ L
Sbjct: 52 SVADLIAAARLGGAVGFVVADAATGRVLEAESPDLAQPPASVAKTITSLFALERLGVGH 110
>gi|214011137|gb|ACJ61335.1| RTG-4 [Acinetobacter baumannii]
Length = 298
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 37/292 (12%), Positives = 80/292 (27%), Gaps = 19/292 (6%)
Query: 5 LVIIAMAMLSNIF-----PFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTK 58
+ + +++ +N + D TG E+ + + S K
Sbjct: 17 FLCLTLSLNANATDSVLEAVTNAETELGARIGLAAHDLETGKR-WEHKSNERFPLTSTFK 75
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST-MTLDNALKLLIVKSAN 117
+ V + K + + S++ + G M+L + + S N
Sbjct: 76 TLACANVLQRVDLGKERIDRVVRFSESNLVTYSPVTEKHVGKKGMSLAELCQATLSTSDN 135
Query: 118 DIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
A I +++ + KF++ + + + L T A + T + L
Sbjct: 136 SAANFILQAIGGPKALTKFLRSIGDDTTRLDRWETELNEAVPGDKRDTTTPIAMVTTLEK 195
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ + Q++ + +TG I A
Sbjct: 196 LLIDETLSIKSRQQLESWLKGNEVGDALFRKGVPSDWIVADRTGAGGYGSRAITAVMWPP 255
Query: 236 DQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSN 287
++ I L + + + N K I K +N N
Sbjct: 256 NRKPIVAALYITETDASFEE---------RNAVIAKIGEQIAKTVLMENSRN 298
>gi|213133716|gb|ACJ43257.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
Length = 277
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 36/256 (14%), Positives = 63/256 (24%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAVAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 249 IAVIWPQGRAPLVLVT 264
>gi|298206568|ref|YP_003717508.1| beta-lactamase CTX-M-65 [Escherichia coli]
gi|125664055|gb|ABN51008.1| beta-lactamase CTX-M-65 [Citrobacter freundii]
gi|126013668|gb|ABN69105.1| extended-spectrum beta-lactamase CTX-M-65 [Escherichia coli]
gi|159032446|gb|ABW87621.1| extended-spectrum beta-lactamase CTX-M-65 [Escherichia coli]
gi|171188400|gb|ACB41778.1| CTX-M-type extended spectrum beta-lactamase [Escherichia coli]
gi|213133670|gb|ACJ43234.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
gi|213133672|gb|ACJ43235.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
gi|213133712|gb|ACJ43255.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
gi|214011881|gb|ACJ61679.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
gi|214011883|gb|ACJ61680.1| CTX extended-spectrum beta-lactamase [Escherichia coli]
gi|225906385|gb|ACO36037.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
gi|225906387|gb|ACO36038.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
gi|225906389|gb|ACO36039.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
gi|225906391|gb|ACO36040.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
gi|225906393|gb|ACO36041.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
gi|225906395|gb|ACO36042.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
gi|225906397|gb|ACO36043.1| CTX-M-65 extended-spectrum beta-lactamase [Escherichia coli]
gi|237511597|gb|ACQ99520.1| CTX-M-65 extended-spectrum beta-lactamase [Salmonella sp. YLA4]
gi|256576430|gb|ACU87989.1| extended-spectrum beta-lactamase CTX-M-65 [Escherichia coli]
gi|256956403|gb|ACV32744.1| beta-lactamase [Escherichia coli]
gi|282192944|gb|ADA81875.1| extended-spectrum beta-lactamase [Escherichia coli]
gi|296537973|gb|ADH29993.1| beta-lactamase CTX-M-65 [Escherichia coli O25b:H4 str. EC958]
gi|296538024|gb|ADH30043.1| beta-lactamase CTX-M-24 [Escherichia coli O25b:H4 str. EC958]
gi|321496187|gb|ADW93965.1| CTX-M-65 [Escherichia coli]
Length = 291
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 36/256 (14%), Positives = 63/256 (24%), Gaps = 18/256 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAVAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGDYGTTND 248
Query: 229 VASAIQGDQ-SLIAVI 243
+A + L+ V
Sbjct: 249 IAVIWPQGRAPLVLVT 264
>gi|179251469|gb|ACB78192.1| beta-lactamase [Klebsiella pneumoniae]
Length = 267
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 32 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 91
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 92 SEKYLADGMTVGELCAAAITMSDNSAANLLLATVGGPVGLTAFLRQIGDNVTRLDRWETE 151
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 152 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 211
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 212 WFIADKTG------------AGERGARGIVALLGPNNKAER 240
>gi|259014676|gb|ACV88638.1| beta-lactamase [Klebsiella pneumoniae]
Length = 222
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 59/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 11 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 70
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 71 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 130
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V +
Sbjct: 131 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLSAG 190
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 191 WFIADKTG------------AGERGARGIVALLGPNNKAER 219
>gi|46309194|emb|CAG25820.1| beta-lactamase [Klebsiella pneumoniae]
gi|46309196|emb|CAG25821.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 59/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 33 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 92
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 93 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 152
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V +
Sbjct: 153 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLSAG 212
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 213 WFIADKTG------------AGERGARGIVALLGPNNKAER 241
>gi|94970862|ref|YP_592910.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Candidatus Koribacter versatilis Ellin345]
gi|94552912|gb|ABF42836.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Candidatus Koribacter versatilis Ellin345]
Length = 1076
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 15/82 (18%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK------------LPYYT---LLDTNTGHVIAEN 45
M++F +++ L+ + +G V+ E
Sbjct: 1 MKRFRILLPAFFLATTWVSAQAPSDLAQRVEEIMTRPEFAHATFGMQFYSLKSGKVVYEL 60
Query: 46 YPDHPWNPASLTKLMTAYVVFS 67
P S TKL T
Sbjct: 61 NAQKLMVPGSTTKLFTEGTALE 82
>gi|257055563|ref|YP_003133395.1| penicillin-binding protein, beta-lactamase class C
[Saccharomonospora viridis DSM 43017]
gi|256585435|gb|ACU96568.1| penicillin-binding protein, beta-lactamase class C
[Saccharomonospora viridis DSM 43017]
Length = 270
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 45/139 (32%), Gaps = 10/139 (7%)
Query: 24 ETNKLPYYTL-LDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ + D G V+ + P AS+TKL+TAY L+E L TP
Sbjct: 11 PVDNAAAAVVKAD---GTVLGTHGDTARVFPLASVTKLLTAYTALIALEEGAVELDTPAG 67
Query: 82 I---SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ S F + + +L +A A+ E + +
Sbjct: 68 PEGSTIRHLLAHTSGLGFNEHKMLAEPGKRRLYSNAGFEQLADALTEHTGIAFDAYQEE- 126
Query: 139 NNTSKNLGLSATHFMNAHG 157
+ LG+ T + G
Sbjct: 127 -ALLQPLGMHDTVLKGSPG 144
>gi|90580535|ref|ZP_01236340.1| hypothetical D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio angustum S14]
gi|90438193|gb|EAS63379.1| hypothetical D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Photobacterium angustum S14]
Length = 467
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK-----LPYYTLL-DTNTGHVIAENYPDHPWNPAS 55
++ L + + F S + + L+ + T VI + D PAS
Sbjct: 3 KKLLCSALITTSFSSFAAFSPQQAIEHLPKGSDVALLIVNPATNKVIYDKRADELQAPAS 62
Query: 56 LTKLMTAYVV 65
K +TA
Sbjct: 63 TQKTITALAA 72
>gi|315364375|pdb|2XQZ|A Chain A, Neutron Structure Of The Perdeuterated Toho-1 R274n R276n
Double Mutant Beta-Lactamase
Length = 260
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 67/237 (28%), Gaps = 11/237 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 25 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 82
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 83 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 142
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 143 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 202
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMG 263
G KTG N +A + L+ V A +RN +A +++ G
Sbjct: 203 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAENRNDILAAAAKIVTHG 259
>gi|87124814|ref|ZP_01080662.1| putative beta-lactamase [Synechococcus sp. RS9917]
gi|86167693|gb|EAQ68952.1| putative beta-lactamase [Synechococcus sp. RS9917]
Length = 385
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 9/154 (5%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
L+ AE + LL + G AE PD AS K V L
Sbjct: 103 ALAAAEKDLQASAFLLKLDDGR-YAELSPDTALPAASSIKTPILLVALELLDAGDLSWNE 161
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
P+T+SK K + + + +++ +++ A + + +
Sbjct: 162 PLTLSKTTVGGGAGWMASKPLGSRFPTHEVATEMIRVSDNTATNLL----IERVGGKELL 217
Query: 139 NNTSKNLGLSATHFMNAHGVVQHG--HYTTARDM 170
N LGL + + + + + T+ARD+
Sbjct: 218 NERFNALGL--SATVVNNWLPDLEGTNTTSARDL 249
>gi|331701606|ref|YP_004398565.1| beta-lactamase class A [Lactobacillus buchneri NRRL B-30929]
gi|329128949|gb|AEB73502.1| beta-lactamase class A [Lactobacillus buchneri NRRL B-30929]
Length = 248
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 63/220 (28%), Gaps = 11/220 (5%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
Y L+ + G + ++ + ASL KL V L + +S +
Sbjct: 18 KYGLLI-QSNGQTLVDHDSHEAFPSASLIKLAILNDVLDS----NVDLDQSVDVSTDELV 72
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
L + L L+I S N + + + ++ GL
Sbjct: 73 GGAGILQLMSVRPWKLRDLLALMISVSDNSATNVVISLMGMNHIQHYLQTHD-FHETGLE 131
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+YT+A + L + + + +F + K N+
Sbjct: 132 RYLMDGRALASGKNNYTSAAESLRLLQQALHNGSEVQSWFANQQFRYKLP----GNFDES 187
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
A KTG ++ + S+ +L A
Sbjct: 188 GENVAVYNKTGEGNLIDHDVAQIVY-NNHSVDIAMLTAGS 226
>gi|94502846|gb|ABF29653.1| beta-lactamase [Escherichia coli]
Length = 252
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 6/215 (2%)
Query: 33 LLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+D + V+ D + S +K+M A V + +K +L P+ I
Sbjct: 32 LIDTADNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYN 89
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ TMTL + S N + F + + + + L +
Sbjct: 90 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTE 149
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A T L Q+ + A
Sbjct: 150 PTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLP 209
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 210 TSWTVGDKTGSGDYGTTNDIAVIWPQGRAPLVLVT 244
>gi|59711706|ref|YP_204482.1| beta-lactamase [Vibrio fischeri ES114]
gi|59479807|gb|AAW85594.1| beta-lactamase [Vibrio fischeri ES114]
Length = 283
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 32/252 (12%), Positives = 70/252 (27%), Gaps = 11/252 (4%)
Query: 1 MRQFLVIIAMAMLSN-----IFPFLSIAETNKLPYYT---LLDTNTGHVIAENYPDHPWN 52
M+ + + +L+N A Y +L+T T A D +
Sbjct: 1 MKIKPFLFGLIVLANNAIAGSLTQNIEAIELSSGGYIGVSVLNTETNKTWAYK-GDQRFP 59
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K + + +I+K + G+ +T A + +
Sbjct: 60 MMSTFKTLACAKMLYDSSVGGIDKYKTTSITKEQIMPWSPVTEPLIGNMITTQKACEATM 119
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ S N A + + +F++ M +T L + + T
Sbjct: 120 LMSDNTAANIVLNEIGGPSSLTQFLRAMGDTKTRLDRIEPELNESKNGDKRDTTTPVAMS 179
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L+ + + +K + K ++ + ++G I A
Sbjct: 180 QTLNALLFGNTLNSQDEQTLKSWMMNNKVSDPLLRSILPNDWSIADRSGAGGFGSRGITA 239
Query: 231 SAIQGDQSLIAV 242
+ I +
Sbjct: 240 AIWNDKHQPIII 251
>gi|73536112|pdb|2A49|A Chain A, Crystal Structure Of Clavulanic Acid Bound To E166a
Variant Of Shv-1 Beta-Lactamase
Length = 269
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 59/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 24 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 83
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L AT
Sbjct: 84 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWATE 143
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 144 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 203
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 204 WFIADKTG------------AGERGARGIVALLGPNNKAER 232
>gi|73536076|pdb|2A3U|A Chain A, Crystal Structure Of Sulbactam Bound To E166a Variant Of
Shv-1 Beta-Lactamase
Length = 270
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 59/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 24 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 83
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L AT
Sbjct: 84 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWATE 143
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 144 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 203
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 204 WFIADKTG------------AGERGARGIVALLGPNNKAER 232
>gi|46015456|pdb|1RCJ|A Chain A, Crystal Structure Of E166a Mutant Of Shv-1 Beta-Lactamase
With The Trans-Enamine Intermediate Of Tazobactam
Length = 265
Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats.
Identities = 34/221 (15%), Positives = 59/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 24 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 83
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L AT
Sbjct: 84 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWATE 143
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 144 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 203
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 204 WFIADKTG------------AGERGARGIVALLGPNNKAER 232
>gi|41059115|gb|AAR99058.1| CTX-M beta-lactamase [Klebsiella pneumoniae]
Length = 257
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 57/215 (26%), Gaps = 6/215 (2%)
Query: 33 LLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+D + V+ D + S +K+M A V + +K +L P+ I
Sbjct: 27 LIDTADNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYN 84
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ TMTL + S N + F + + + + L +
Sbjct: 85 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTE 144
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A T L Q+ + A
Sbjct: 145 PTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLP 204
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 205 TSWTAGDKTGSGDYGTTNDIAVIWPQGRAPLVLVT 239
>gi|78485138|ref|YP_391063.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Thiomicrospira
crunogena XCL-2]
gi|78363424|gb|ABB41389.1| D-Ala-D-Ala carboxypeptidase 3 (S13) [Thiomicrospira crunogena
XCL-2]
Length = 415
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIA---------ENYPDH 49
MR+ L + +L F + + L TG V+ E
Sbjct: 1 MRRLLYQWSVGAGLLLGSFLLHAAPASVSLKEALSQLHETG-VLMLNAQQEPVIEKDASK 59
Query: 50 PWNPASLTKLMTAYVVFSF 68
PAS TKL+TAY+
Sbjct: 60 LRVPASTTKLVTAYLALKH 78
>gi|291566052|dbj|BAI88324.1| probable D-alanyl-D-alanine carboxypeptidase [Arthrospira
platensis NIES-39]
Length = 474
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 21/88 (23%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLD--------------TNTG 39
M+ + + +LS P ++I + P LD ++G
Sbjct: 1 MKSIAIALISTLLSFSGPVMAIEPRSICPAVLEAEINAIALDPKFSRSRWGILIESLDSG 60
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFS 67
V+ + + PAS KL+T
Sbjct: 61 QVLYSLDSERFFLPASTIKLLTTVASME 88
>gi|160903197|ref|YP_001568778.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Petrotoga mobilis SJ95]
gi|160360841|gb|ABX32455.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Petrotoga mobilis SJ95]
Length = 453
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
D T V+ D + PAS TKL+TA V
Sbjct: 106 DLGTNEVLFNYNSDKLFIPASNTKLITALVALE 138
>gi|149278990|ref|ZP_01885124.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
4) [Pedobacter sp. BAL39]
gi|149230269|gb|EDM35654.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
4) [Pedobacter sp. BAL39]
Length = 470
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 18/84 (21%)
Query: 1 MRQ-FLVIIAMAMLSNIFPFLSIAE-------------TNKLPYYT----LLDTNTGHVI 42
M+Q +I++ + + + A + Y +LD +G +
Sbjct: 1 MKQTKSLILSFLLALSFQAASAQAPLQKLEQAYNTLNKDPQARYAITTLLVLDARSGKTL 60
Query: 43 AENYPDHPWNPASLTKLMTAYVVF 66
+ + AS K +T+ F
Sbjct: 61 FGRNENIGISTASTLKTITSATAF 84
>gi|258651088|ref|YP_003200244.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Nakamurella multipartita DSM 44233]
gi|258554313|gb|ACV77255.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Nakamurella multipartita DSM 44233]
Length = 466
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
L + ++D +G V+ P PAS KL+T
Sbjct: 75 LESQLAAQFANPALAQFSGVIIDPESGTVLWNQNSTAPQLPASTAKLLT 123
>gi|197215899|gb|ACH53187.1| CTX-M-32 beta-lactamase [Escherichia coli]
Length = 282
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|260887395|ref|ZP_05898658.1| beta-lactamase [Selenomonas sputigena ATCC 35185]
gi|330840053|ref|YP_004414633.1| hypothetical protein Selsp_2228 [Selenomonas sputigena ATCC 35185]
gi|260862864|gb|EEX77364.1| beta-lactamase [Selenomonas sputigena ATCC 35185]
gi|329747817|gb|AEC01174.1| hypothetical protein Selsp_2228 [Selenomonas sputigena ATCC 35185]
Length = 321
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 33/236 (13%), Positives = 71/236 (30%), Gaps = 15/236 (6%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASE 88
L D + G+ D AS+ K+ +K + L + + + +
Sbjct: 85 TVYLADPDDGNAPLIRDADE-MRAASMIKVFILACAMEKVKAGELHLDDVLRLEEVDKVG 143
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
+ ++ G+ +++ L+ +I +S N + + L T +N + G
Sbjct: 144 GAGVITGYRAGTVFSVEELLRQMIAESDNTATNMMIDRLGMT------EINGYMRAHGYD 197
Query: 149 ATHFMNAHGVVQ-----HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
A+ + T+A+D+ R+ Y + +
Sbjct: 198 ASRLQRKMMDDAAVKEGRENITSAKDLGTFFLRLYRSECVGEPYDGKMRDMLFAQTDREC 257
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL-DRNTRNKVSAS 258
KTG + + +++I VIL +R R
Sbjct: 258 FPQALPGARIAH-KTGELDRLYADGGILYGEDGRAVILVILADDIERRGRAIEMMR 312
>gi|269797551|ref|YP_003311451.1| beta-lactamase class A-like protein [Veillonella parvula DSM 2008]
gi|269094180|gb|ACZ24171.1| Beta-lactamase class A-like protein [Veillonella parvula DSM 2008]
Length = 272
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 32/239 (13%), Positives = 71/239 (29%), Gaps = 12/239 (5%)
Query: 23 AETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
A + Y L D +IA + + ASL K++ VF + ++ + +
Sbjct: 22 APAGNISYAVLQFDDEEEPTLIAARGENTVHSSASLIKVLIMEYVFHLARTEQLDINDTV 81
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+S+ G L L++ +++IA + ++ ++++N
Sbjct: 82 PLSRTPRVEGGGALQELVGKHSFTYLELCRLMMVLSDNIATNLLITVL-----GMENINA 136
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP---QYMHYFQIKGLEIKG 197
++ LG+ + +S + + + I G
Sbjct: 137 RAEKLGVDEMELNRMMMDFNALAEGRDNHITAMSLARLYKHIFECRDRDVYGREMWNILG 196
Query: 198 KKYPNTNWAVGTFLGA-DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
++ G KTG + ++L + N R K
Sbjct: 197 RQQFRDILPFYWGEGIRFHHKTGSLDRVEHDGGVIETFRGH-FCFILLMSDIDNDRGKE 254
>gi|281335914|gb|ADA62514.1| CTX-M-61-like beta-lactamase [synthetic construct]
Length = 291
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKVISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|159138975|gb|ABW89474.1| beta-lactamase shv-102 [Klebsiella pneumoniae]
Length = 257
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 32/215 (14%), Positives = 58/215 (26%), Gaps = 4/215 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 21 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 80
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 81 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 140
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 141 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 200
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL 244
KTG IVA ++ ++ + L
Sbjct: 201 WFIADKTGAGERGARGIVALLSPNNKAERIVVIYL 235
>gi|159138973|gb|ABW89473.1| beta-lactamase shv-102 [Klebsiella pneumoniae]
Length = 258
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 32/215 (14%), Positives = 58/215 (26%), Gaps = 4/215 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 22 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 81
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 82 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETA 141
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 142 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 201
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL 244
KTG IVA ++ ++ + L
Sbjct: 202 WFIADKTGAGERGARGIVALLSPNNKAERIVVIYL 236
>gi|281335980|gb|ADA62547.1| CTX-M-61-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|32307185|gb|AAP79046.1| beta-lactamase [Raoultella planticola]
Length = 291
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G ++A D + S K++ V S + + L I +
Sbjct: 45 LDLASGQLLAGYRSDERFPMMSTFKVLLCGAVLSRVDAGEEQLDRRIHYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ +T+ I S N A + +L + F++H + + L T
Sbjct: 105 TEKHLTDGLTVGELCAAAITLSDNTAANLLLTTLGGPQGLTSFLRHSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ ++ K +V
Sbjct: 165 LNEARPGDVRDTTTPQAMARTLRNLLTGRVLSSASQQQLQRWMVEDKVAGPLLRSVLPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
KTG I+A+ + ++ + L G + RNK A++
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGKAARIVVIYLTGTPATMDERNKQIAAI 276
>gi|32307191|gb|AAP79049.1| beta-lactamase [Raoultella planticola]
Length = 291
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G ++A D + S K++ V S + + L I +
Sbjct: 45 LDLASGQLLAGYRSDERFPMMSTFKVLLCGAVLSRVDAGEEQLDRRIHYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ +T+ I S N A + +L + F++H + + L T
Sbjct: 105 TEKHLTDGLTVGELCAAAITLSDNTAANLLLTTLGGPQGLTSFLRHSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ ++ K +V
Sbjct: 165 LNEARPGDVRDTTTPQAMARTLRNLLTGRVLSSASQQQLQRWMVEDKVAGPLLRSVLPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
KTG I+A+ + ++ + L G + RNK A++
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGKAARIVVIYLTGTPATMDERNKQIAAI 276
>gi|82400492|gb|ABB72997.1| beta-lactamase PLA-5A [Raoultella planticola]
Length = 291
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G ++A D + S K++ V S + + L I +
Sbjct: 45 LDLASGQLLAGYRSDERFPMMSTFKVLLCGAVLSRVDAGEEQLDRRIHYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ +T+ I S N A + +L + F++H + + L T
Sbjct: 105 TEKHLTDGLTVGELCAAAITLSDNTAANLLLTTLGGPQGLTSFLRHSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ ++ K +V
Sbjct: 165 LNEARPGDVRDTTTPQAMARTLRNLLTGRVLSSASQQQLQRWMVEDKVAGPLLRSVLPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
KTG I+A+ + ++ + L G + RNK A++
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGKAARIVVIYLTGTPATMDERNKQIAAI 276
>gi|73665392|gb|AAZ79403.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 39/274 (14%), Positives = 71/274 (25%), Gaps = 17/274 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-----------YYTLLDTNTGHVIAENYPDH 49
MR + + + + + + + Y +D +G +A
Sbjct: 1 MRYVCLCLISLVAALPLAVFASPQPLEQIKISEGQLAGRVGYVEMDLASGRTLAAWRASE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPLMSTFKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + + F++ + + L T A T A
Sbjct: 121 AAITMSDNSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPA 180
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
L + T Q+ + + AV KTG
Sbjct: 181 SMATTLRKLLTTPSLSARSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRG 240
Query: 228 IVASAIQGDQ--SLIAVILG--ALDRNTRNKVSA 257
IVA + ++ + L A RN+ A
Sbjct: 241 IVALLGPDGKAERIVVIYLRDTAATMAERNEQIA 274
>gi|124365352|gb|ABN09669.1| beta-lactamase CTX-M-61 [Salmonella enterica subsp. enterica
serovar Typhimurium]
Length = 291
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|6979148|gb|AAF34333.1| beta-lactamase SHV-1 variant [Klebsiella pneumoniae]
Length = 260
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 35 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 94
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 95 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 154
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 155 LNEAFPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 214
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 215 WFIADKTG------------AGERGARGIVALLGPNNKAER 243
>gi|254439950|ref|ZP_05053444.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Octadecabacter antarcticus 307]
gi|198255396|gb|EDY79710.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Octadecabacter antarcticus 307]
Length = 509
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
L D +TG ++ + PAS+TK +TA
Sbjct: 66 VLADADTGEMLEQIDAGIALPPASVTKAVTALYALDA 102
>gi|221229334|gb|ABO61021.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 304
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 2/203 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K M V S + L T + I++
Sbjct: 62 VLNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEKDLLSYAP 121
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 122 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSVTRNDRNEP 181
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A L+ + Q Q I + A
Sbjct: 182 DVNLFAKGDPRDTTSPAAMATSLARFAVGNGLQPASRQQFTDWLIDNQTGDACLRAGLAK 241
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 242 RWRVGDKTGSNGDDTRNDIAVLW 264
>gi|281335996|gb|ADA62555.1| CTX-M-32-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|221229325|gb|ABO61016.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 304
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 2/203 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K M V S + L T + I++
Sbjct: 62 VLNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEKDLLSYAP 121
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 122 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSVTRNDRNEP 181
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A L+ + Q Q I + A
Sbjct: 182 DVNLFAKGDPRDTTSPAAMATSLARFAVGNGLQPASRQQFTDWLIDNQTGDACLRAGLGK 241
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 242 RWRVGDKTGSNGDDTRNDIAVLW 264
>gi|221229319|gb|ABO61013.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 304
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 2/203 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K M V S + L T + I++
Sbjct: 62 VLNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEKDLLSYAP 121
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 122 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSVTRNDRNEP 181
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A L+ + Q Q I + A
Sbjct: 182 DVNLFAKGDPRDTTSPAAMATSLARFAVGNGLQPASRQQFTDWLIDNQTGDACLRAGLGK 241
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 242 RWRVGDKTGSNGDDTRNDIAVLW 264
>gi|109809899|gb|ABG46354.1| extended-spectrum beta-lactamase [Escherichia coli]
Length = 277
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|74474868|dbj|BAE44422.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
gi|74474876|dbj|BAE44426.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
gi|74474878|dbj|BAE44427.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 290
Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats.
Identities = 31/203 (15%), Positives = 56/203 (27%), Gaps = 2/203 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K M V S + L T + I++
Sbjct: 51 VLNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEKDLLSYAP 110
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 111 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSVTRNDRNEP 170
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A L+ + Q Q I + A
Sbjct: 171 DVNLFAKGDPRDTTSPAAMATSLARFAVGNGLQPASRQQFTDWLIDNQTGDACLRAGLGK 230
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 231 RWRVGDKTGSNGDDTRNDIAVLW 253
>gi|197724678|emb|CAP12360.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 64/258 (24%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPQPLEQIKISESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + F++ + + L T A T A L
Sbjct: 128 NTAGNLLLKIVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMATTLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T Q+ + + AV KTG A +
Sbjct: 188 KLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTG------------AGE 235
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG + R
Sbjct: 236 RGSRGIVALLGPDGKAER 253
>gi|42398296|gb|AAS13468.1| penicillinase OKP-5 [Klebsiella pneumoniae]
gi|73665396|gb|AAZ79405.1| beta-lactamase [Klebsiella pneumoniae]
gi|197724709|emb|CAP12356.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 64/258 (24%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPQPLEQIKISESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + F++ + + L T A T A L
Sbjct: 128 NTAGNLLLKIVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMATTLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T Q+ + + AV KTG A +
Sbjct: 188 KLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTG------------AGE 235
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG + R
Sbjct: 236 RGSRGIVALLGPDGKAER 253
>gi|298206545|ref|YP_003717483.1| beta-lactamase [Escherichia coli]
gi|3915633|sp|P28585|BLC1_ECOLX RecName: Full=Beta-lactamase CTX-M-1; AltName: Full=Beta-lactamase
MEN-1; AltName: Full=Cefotaximase 1; Flags: Precursor
gi|1524021|emb|CAA63262.1| ES-beta-lactamase [Escherichia coli]
gi|16304813|emb|CAC95168.1| CTX-M-1 beta-lactamase [Escherichia coli]
gi|16304820|emb|CAC95173.1| CTX-M-1 beta-lactamase [Proteus mirabilis]
gi|70671432|emb|CAJ01342.1| beta-lactamase CTX-M-1 [Escherichia coli]
gi|116643127|gb|ABK06383.1| beta-lactamase bla-CTX-M-1 [Escherichia coli]
gi|192758060|gb|ACF04955.1| beta-lactamase CTX-M-1 [Escherichia coli]
gi|209483439|gb|ACI47259.1| extended-spectrum class A beta-lactamase CTX-M-1 [Escherichia coli]
gi|209483443|gb|ACI47262.1| extended-spectrum class A beta-lactamase CTX-M-1 [Klebsiella
pneumoniae]
gi|256956384|gb|ACV32728.1| beta-lactamase CTX-M1 [Escherichia coli]
gi|256956396|gb|ACV32738.1| beta-lactamase CTX-M1 [Escherichia coli]
gi|256956408|gb|ACV32748.1| ES-beta-lactamase [Escherichia coli]
gi|256956421|gb|ACV32758.1| beta-lactamase CTX-M1 [Escherichia coli]
gi|296537950|gb|ADH29970.1| beta-lactamase [Escherichia coli O25b:H4 str. EC958]
gi|313585894|gb|ADR71056.1| beta lactamase CTX-M-1 [Escherichia coli]
gi|328802646|emb|CBL58176.1| extended spectrum beta-lactamase [Escherichia coli]
gi|328880016|emb|CBL58188.1| extended spectrum beta-lactamase [Escherichia coli]
gi|1588603|prf||2209219A cefotaximase CTX-M-1
Length = 291
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|82655084|emb|CAJ19611.1| OKP-B beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 64/258 (24%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPQPLEQIKISESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + F++ + + L T A T A L
Sbjct: 128 NSAGNLLLKIVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMATTLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T Q+ + + AV KTG A +
Sbjct: 188 KLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTG------------AGE 235
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG + R
Sbjct: 236 RGSRGIVALLGPDGKAER 253
>gi|281335994|gb|ADA62554.1| CTX-M-1-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|238801254|gb|ACR56340.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
gi|238801256|gb|ACR56341.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
gi|238801258|gb|ACR56342.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
gi|238801260|gb|ACR56343.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
gi|238801262|gb|ACR56344.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
gi|238801264|gb|ACR56345.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
gi|238801266|gb|ACR56346.1| beta-lactamase CTX-M-2 [Klebsiella pneumoniae]
Length = 281
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 37/261 (14%), Positives = 71/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLD-TNTGHVIAEN 45
+R+ ++ + + A+ N + L++ + ++
Sbjct: 2 IRRSMLTVMATLPLLFSSATLHAQANSVQQQLEALEKSSGGRLGVALINTADNSQILY-- 59
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + K +L + I K+ + TMTL
Sbjct: 60 RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEKHVNGTMTLA 119
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + L +K F + + + + L + A
Sbjct: 120 ELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLNTAIPGDPRDT 179
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
T L Q+ + A G KTG
Sbjct: 180 TTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWVVGDKTGSGDY 239
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A + L+ V
Sbjct: 240 GTTNDIAVIWPENHAPLVLVT 260
>gi|224552432|gb|ACN54552.1| extended-spectrum beta-lactamase CTX-M-2 [Escherichia coli]
Length = 271
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 47 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 104
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 105 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 164
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 165 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 224
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 225 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVT 255
>gi|30387195|ref|NP_848173.1| BlaP1 [Pasteurella multocida]
gi|30314018|gb|AAP15300.1| beta-lactamase [Pasteurella multocida]
Length = 288
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 80/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL++ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLVFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 121 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 181 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 240
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 241 TAVVWSEHQAPIIV 254
>gi|284050224|ref|ZP_06380434.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Arthrospira platensis str. Paraca]
Length = 474
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 21/88 (23%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLD--------------TNTG 39
M+ + +LS P ++ P LD ++G
Sbjct: 1 MKSIAIAFISTLLSFSGPVMATEPRPICPAVLEAEINAIALDPKFSRSRWGILIESLDSG 60
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFS 67
V+ + + PAS KL+T
Sbjct: 61 QVLYSLDSERFFLPASTIKLLTTVASME 88
>gi|194477214|ref|YP_002049393.1| possible beta-lactamase family protein [Paulinella chromatophora]
gi|171192221|gb|ACB43183.1| possible beta-lactamase family protein [Paulinella chromatophora]
Length = 364
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 64/177 (36%), Gaps = 9/177 (5%)
Query: 10 MAMLSNIFPFLSIA-ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ LS ++ L+ K + L+ + G AE PD P ASL + +
Sbjct: 91 LLALSKVWANLAEGWPDLKASAFLLI-LDDGR-YAELEPDIPLPAASLIRFPILLIAMDE 148
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
L ++ + I I+++ T K +T + +++ ++ A+ +
Sbjct: 149 LDHERMLWNERIKITQDVLVSEGDLITKKSLNTQLKIYEVASEMIRMSDSTAINMFIKRL 208
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
++ +N +LGL++T N + T ++ + Q +
Sbjct: 209 GDKE----ILNQRFISLGLNSTCIKN--WLPDLNSENTISARDLVVIHTLVNTGQIL 259
>gi|73665390|gb|AAZ79402.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 65/258 (25%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPQPLEQIKISESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A L
Sbjct: 128 NTAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMATTLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T Q+ + + AV KTG A +
Sbjct: 188 KLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTG------------AGE 235
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG + R
Sbjct: 236 RGSRGIVALLGPDGKAER 253
>gi|23100600|ref|NP_694067.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis
HTE831]
gi|22778833|dbj|BAC15101.1| D-alanyl-D-alanine carboxypeptidase [Oceanobacillus iheyensis
HTE831]
Length = 508
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++D G + D +PAS K++TA
Sbjct: 72 VMDAANGDQLFSRNIDIRLHPASNMKVLTAVSALE 106
>gi|281335968|gb|ADA62541.1| CTX-M-57-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|82655086|emb|CAJ19612.1| OKP-B beta-lactamase [Klebsiella pneumoniae]
gi|82655088|emb|CAJ19613.1| OKP-B beta-lactamase [Klebsiella pneumoniae]
gi|82655090|emb|CAJ19614.1| OKP-B beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 65/258 (25%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 8 LISLIAALPLAVFASPQPLEQIKISESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A L
Sbjct: 128 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMATTLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T Q+ + + AV KTG A +
Sbjct: 188 KLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTG------------AGE 235
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG + R
Sbjct: 236 RGSRGIVALLGPDGKAER 253
>gi|288959993|ref|YP_003450333.1| beta-lactamase [Azospirillum sp. B510]
gi|288912301|dbj|BAI73789.1| beta-lactamase [Azospirillum sp. B510]
Length = 301
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 38/213 (17%), Positives = 71/213 (33%), Gaps = 4/213 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPP 91
+LDT TG + D + S K + A V + + K L I ++K + Y P
Sbjct: 60 VLDTATGR-LRGWRGDERFPMCSTFKFLLAAAVLKSVDQGKDRLDRRIPVTKADLLPYAP 118
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ T G+ TL + + S N A + F++ + + + L +
Sbjct: 119 FSETRLTGTPPTLAELCEAAVTLSDNTAANLLLPGVGDPAGLTAFLRGIGDQTTRLDRNE 178
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+A T A + + + D + +++ I K A
Sbjct: 179 PTLNSAIPGDPRDTTTPAAMVRGMERLLIGDVLRLDSRWRLVDWLIANKTGDKRLRAGLP 238
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
G KTG N +A ++ + +
Sbjct: 239 AGWRVGDKTGTGANGTANDIAIVWPDGRAPVLI 271
>gi|281335954|gb|ADA62534.1| CTX-M-61-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|114777089|ref|ZP_01452109.1| hypothetical protein SPV1_06994 [Mariprofundus ferrooxydans PV-1]
gi|114552610|gb|EAU55070.1| hypothetical protein SPV1_06994 [Mariprofundus ferrooxydans PV-1]
Length = 350
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 28/217 (12%), Positives = 54/217 (24%), Gaps = 12/217 (5%)
Query: 30 YYTLLDTN--TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L+D + +A+ D ASL K+ F +K+ K L +
Sbjct: 91 SIALVDMTDPSNPELAQVNGDEMMYAASLPKIAVLLTAFELIKQGKLPLNRETRDTMTRM 150
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
SN M + + ++ + K+ + + G
Sbjct: 151 IRYSSNKDATAMIDMVGKDYINTVMESP----------KYRLYDPKYNGGLWVGKEYAGG 200
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+A H H + + + P+Y + +
Sbjct: 201 TAYHRDPLHNLSHGATAMQVARFYYMMQTGQLVSPRYSAEMKGIMADSGINHKFVKGLDA 260
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ T + A + IAV L
Sbjct: 261 MHNPDIRMYRKSGTWRTYHADSALIEHNGRRYIAVAL 297
>gi|281336012|gb|ADA62563.1| CTX-M-3-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|149202021|ref|ZP_01878995.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseovarius sp. TM1035]
gi|149145069|gb|EDM33098.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseovarius sp. TM1035]
Length = 499
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+S A + Y + D TG ++ PAS+TK +TA L +
Sbjct: 50 TAEALISQANLSGRVGYAVADARTGQLLESGDATTGLPPASVTKAVTALYALDALGPEH 108
>gi|260905823|ref|ZP_05914145.1| beta-lactamase related protein [Brevibacterium linens BL2]
Length = 320
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 24/249 (9%), Positives = 68/249 (27%), Gaps = 26/249 (10%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
D ++G + + + + AS+ K+ + L ++ +
Sbjct: 69 SALAFDIDSGERVFAHNENDELDTASMGKVFLLHTALQMHVGGTLNLQERLSRRPSERVD 128
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+ +++ + L+ S N + + ++++ ++LG
Sbjct: 129 ESGIWYLMEQEELSVYDVAVLVGAFSDNFATNVLIRRV------GLENVARQVEDLGYRN 182
Query: 150 THFMNAHGVVQHGH------YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ + + TA +++ R D +I + +
Sbjct: 183 SGLHDFLRWPRPAKAPRTLSTGTAAELSDFMARHAKDQFWDESTNEIFRRWLGAGADTSM 242
Query: 204 -----------NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL-IAVILGALDRNT 251
++ + KTG T + A+ + + AV
Sbjct: 243 VASAFDLDPLAHYNYQRDVWVW-NKTG-TNGTIRADSGIAMTPTRRVAYAVFANWEKDTD 300
Query: 252 RNKVSASLL 260
R ++
Sbjct: 301 RVVDVMPIM 309
>gi|109809903|gb|ABG46356.1| extended-spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 276
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|305667435|ref|YP_003863722.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Maribacter sp. HTCC2170]
gi|88709483|gb|EAR01716.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Maribacter sp. HTCC2170]
Length = 422
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-------------LLDTNTGHVIAENYP 47
M++ +VI+ + L + K+ L+D + I
Sbjct: 1 MKKIVVILLFSFLFIGCSSARKSLVKKIDSSINSDDYNNQFTGFLLVDIESRDTIYNVNS 60
Query: 48 DHPWNPASLTKLMTAYVVFS 67
+ PAS TK+ T Y
Sbjct: 61 TKYFTPASNTKIFTLYTSLK 80
>gi|300773855|ref|ZP_07083724.1| possible peptidase S13, D-Ala-D-Ala carboxypeptidase C
[Sphingobacterium spiritivorum ATCC 33861]
gi|300760026|gb|EFK56853.1| possible peptidase S13, D-Ala-D-Ala carboxypeptidase C
[Sphingobacterium spiritivorum ATCC 33861]
Length = 441
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-----------SIAETNKLPYY--TLLDTNTGHVIAENYP 47
M+ +L +++L I P S AE K +Y +L D ++ +
Sbjct: 5 MKLYLFSFFVSLLVYIMPVKGQISNDLQQKFSQAEGLKKHFYGFSLYDADSSRFLFGINE 64
Query: 48 DHPWNPASLTKLMTAYVVF 66
+ + PAS TK+ T
Sbjct: 65 EKHFMPASNTKIFTLLAAI 83
>gi|281335992|gb|ADA62553.1| CTX-M-79-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|74474870|dbj|BAE44423.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 290
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 57/203 (28%), Gaps = 2/203 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K M V S + L T + I++
Sbjct: 51 VLNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAEKDLLSYAP 110
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 111 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSVTRNDRNEP 170
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A A L+ + Q Q I + A
Sbjct: 171 DVNLFAKGDPRDTTSPAAMAASLARFAVGNGLQPASRQQFTDWLIDNQTGDACLRAGLGK 230
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 231 RWRVGDKTGSNGDDTRNDIAVLW 253
>gi|281335948|gb|ADA62531.1| CTX-M-22-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|269959868|ref|ZP_06174245.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269835167|gb|EEZ89249.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 283
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 32/252 (12%), Positives = 78/252 (30%), Gaps = 11/252 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWN 52
M++ L++ + + S+ + E ++ DT T + D +
Sbjct: 1 MKKLLLLFGLVVCSSATYAAKLNEDLASIEEHISGRLGVSVWDTQTDEK-WDYRGDERFP 59
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K + + + +K + + G T +++A + +
Sbjct: 60 MMSTFKTLACATMLKDMDSEKLDKNATAKVEERNMVVWSPVMDRMAGQTTRIEHACEAAM 119
Query: 113 VKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ S N A + S+ +F++ + + + L A + T +
Sbjct: 120 LMSDNTAANIVLRSIGGPHGVTRFLRSIGDKATRLDRFEPRLNEAKPGDKQDTTTPNTMV 179
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L ++ D Y Q+K K + +V + ++G I A
Sbjct: 180 NTLHTLLEGDALSYESRIQLKIWMQDNKVSDSLMRSVLPKGWSIADRSGAGGFGSRGITA 239
Query: 231 SAIQGDQSLIAV 242
+ + + +
Sbjct: 240 MIWKENHKPVYI 251
>gi|30140337|emb|CAD89606.1| beta-lactamase CTX-M-32 [Escherichia coli]
gi|119926023|emb|CAM06581.1| extended-spectrum beta-lactamase CTX-M-32 [Proteus mirabilis]
Length = 291
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|9910659|sp|P96348|BLA6_KLEPN RecName: Full=Beta-lactamase SHV-6; Flags: Precursor
gi|1871549|emb|CAA71948.1| beta-lactamase class A [Klebsiella pneumoniae]
Length = 260
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 58/221 (26%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 35 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 94
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 95 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 154
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 155 LNEALPGDARATTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAG 214
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A + I +LG ++ R
Sbjct: 215 WFIADKTG------------AGERGARGIVALLGPNNKAER 243
>gi|281335974|gb|ADA62544.1| CTX-M-1-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|227539713|ref|ZP_03969762.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Sphingobacterium
spiritivorum ATCC 33300]
gi|227240355|gb|EEI90370.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Sphingobacterium
spiritivorum ATCC 33300]
Length = 450
Score = 46.1 bits (107), Expect = 0.007, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 13/79 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-----------SIAETNKLPYY--TLLDTNTGHVIAENYP 47
M+ +L +++L I P S AE K +Y +L D ++ +
Sbjct: 14 MKLYLFSFFVSLLVYIMPVKGQISNDLQQKFSQAEGLKKHFYGFSLYDADSSRFLFGINE 73
Query: 48 DHPWNPASLTKLMTAYVVF 66
+ + PAS TK+ T
Sbjct: 74 EKHFMPASNTKIFTLLAAI 92
>gi|110630023|gb|ABG80523.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|113374282|gb|ABI34705.1| extended-spectrum beta-lactamase [Escherichia coli]
gi|156447585|gb|ABU63585.1| beta-lactamase CTX-M-57 [Shigella sonnei]
gi|164665318|gb|ABY66121.1| CTX-m-15-like beta-lactamase [Escherichia coli]
gi|256576424|gb|ACU87986.1| extended-spectrum beta-lactamase CTX-M-55 [Escherichia coli]
gi|256576428|gb|ACU87988.1| extended-spectrum beta-lactamase CTX-M-55 [Escherichia coli]
gi|256576432|gb|ACU87990.1| extended-spectrum beta-lactamase CTX-M-55 [Escherichia coli]
gi|282192942|gb|ADA81874.1| extended-spectrum beta-lactamase [Escherichia coli]
gi|302347801|gb|ADL27910.1| beta-lactamase CTX-M-55 [Escherichia coli]
Length = 291
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|281335966|gb|ADA62540.1| CTX-M-57-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|332669074|ref|YP_004452082.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Cellulomonas fimi ATCC 484]
gi|332338112|gb|AEE44695.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Cellulomonas fimi ATCC 484]
Length = 470
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ A+ + ++ + D TG V+A + D PAS KL+TA
Sbjct: 75 SAALQGLVDGLVADPRMGPSVGVVVADQLTGEVLASHLADQGRTPASTAKLVTAVAALQ 133
>gi|320333944|ref|YP_004170655.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Deinococcus maricopensis DSM 21211]
gi|319755233|gb|ADV66990.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Deinococcus maricopensis DSM 21211]
Length = 419
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Query: 18 PFLSIAETNKLPY-YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ + +LD +TG + E PD + PAS+ KL + V L
Sbjct: 36 ALNAALDRANAHAGALVLDADTGETLYERAPDDAFTPASVRKLFSMSAVLYTLGAGYWFS 95
Query: 77 TTPITISKNASEYPPS 92
T + +A+ + P
Sbjct: 96 TDVTGPTPDANGHVPR 111
>gi|308175884|ref|YP_003915290.1| serine-type D-Ala-D-Ala carboxypeptidase [Arthrobacter arilaitensis
Re117]
gi|307743347|emb|CBT74319.1| putative serine-type D-Ala-D-Ala carboxypeptidase [Arthrobacter
arilaitensis Re117]
Length = 454
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 24/59 (40%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ +++ L+ ++D TG+V+ + + PAS K++TA
Sbjct: 68 AVLTASLDAILADKSDKTSFNAQVVDVATGNVLYDRNSEINGTPASSLKVVTAIAALDA 126
>gi|229823495|ref|ZP_04449564.1| hypothetical protein GCWU000282_00793 [Catonella morbi ATCC 51271]
gi|229786939|gb|EEP23053.1| hypothetical protein GCWU000282_00793 [Catonella morbi ATCC 51271]
Length = 579
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 31/227 (13%), Positives = 70/227 (30%), Gaps = 10/227 (4%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPSNSTFKKGSTMTLDN 106
+ + PAS K+ ++ KE K + + + N + G+ +LD
Sbjct: 345 NQIFFPASTQKIYVLTELYRQYKEGKLQPSQTMAMEGSNIVPGAGHINESPAGTVYSLDE 404
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN-AHGVVQHGHYT 165
+ + + S N A + E++ + + LG+ T+ + T
Sbjct: 405 LVDYVAIYSDNTAANMLIEAV-----GGGGIVTQHAHELGMLDTYLEGKYYQTDNGRFQT 459
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
T + A L ++ + + +++ + + K+G
Sbjct: 460 TPDNAARLFAKLANHELNGEPWDSMLIDKLRLNSHS--FLRTYLYETDSWNKSGLGAPEQ 517
Query: 226 FNIVASAIQGDQSLIAVILGA-LDRNTRNKVSASLLSMGFYNKTDRK 271
++ Q IAV + D + R L + +
Sbjct: 518 NDVATFVTQYGSYSIAVYTNSWNDYDARFDQVGRLSQRVYEAFNQIR 564
>gi|8469128|sp|O33807|BLC4_SALTY RecName: Full=Beta-lactamase CTX-M-4; AltName: Full=Cefotaximase 4;
Flags: Precursor
gi|2462701|emb|CAA74573.1| beta lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 291
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I + +
Sbjct: 56 ADNSQILYV--ADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIRASDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAGALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A T L Q+ + A
Sbjct: 174 SAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGMPKSWG 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ GF
Sbjct: 234 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDILAAAAKIVTHGF 291
>gi|254967224|gb|ACT97668.1| TEM-1d beta-lactamase [mixed culture bacterium PI_gF3SD01_30]
Length = 128
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 36/118 (30%), Gaps = 11/118 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
S K++ V S + + L I S+N ++ ++
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYFTSHRKASYGWHDSKRIMQC 123
>gi|808967|emb|CAA25532.1| unnamed protein product [Escherichia coli]
Length = 113
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
Query: 185 MHYFQIKGLEIKGKKYPNTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ NTN V KTGFT A+G +V + ++ + V+
Sbjct: 1 REDMATFSNPTYTLPFRNTNHLVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVV 60
Query: 244 LGALDRNTRNKVSASLLSM 262
+ A + T ++ L +
Sbjct: 61 MDAFGKYTHFADASRLRTW 79
>gi|289667228|ref|ZP_06488303.1| beta lactamase [Xanthomonas campestris pv. musacearum NCPPB4381]
Length = 297
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 6/228 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLD+ TG + + D + S K + A V + + K ML + I +
Sbjct: 55 LLDSATGWHLGQRQ-DERFPMCSTFKFVLAAAVLQRVDQGKLMLAQRVKIRASDMLEYAP 113
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G ++++ + ++ S N A + F++ + +
Sbjct: 114 VTERHIGGSLSVGELCRATMIYSDNPAANLLFPLVGDPAGVTAFLRSIGDAQTCSDRHEP 173
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T A L + D + Q+ I + + A T
Sbjct: 174 DMNRFAAGDPRDTTTPAAMANTLRTLLLGDALRPASRKQLTDWMINNRTGDDCLRAGLTR 233
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQS---LIAVILGALDRNTRNKV 255
G KTG N +A L+ L +
Sbjct: 234 DWKIGDKTGSNGIDTRNDIAILWPPKGRAPLLLTAYLNGAKVEDAARD 281
>gi|229196713|ref|ZP_04323456.1| Beta-lactamase [Bacillus cereus m1293]
gi|228586788|gb|EEK44863.1| Beta-lactamase [Bacillus cereus m1293]
Length = 332
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 38/225 (16%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 95 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 151
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 152 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRKMGDRVTMSDRFETE 211
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 212 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 271
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 272 WVVGDKSGAGSYGTRNDIAIVWPPNRSPIIIAILSSKDEKEATYD 316
>gi|197724606|emb|CAP12358.1| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 43/270 (15%), Positives = 72/270 (26%), Gaps = 14/270 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNP 53
R L+ + A+ +F E K+ Y +D +G +A +
Sbjct: 5 RLCLISLIAALPLAVFASPQPLEQIKISEGQLAGRVGYVEMDLASGRTLAAWRASERFPL 64
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
S K++ V + + L I + S MT+ I
Sbjct: 65 MSTFKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAIT 124
Query: 114 KSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
S N + F++ + + L T A T A
Sbjct: 125 MSDNSAGNLLLKIVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAT 184
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
L + T Q+ + + AV KTG IVA
Sbjct: 185 TLRKLLTTPSLSARSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRGIVAL 244
Query: 232 AIQGDQ--SLIAVILG--ALDRNTRNKVSA 257
+ ++ + L A RN+ A
Sbjct: 245 LGPDGKAERIVVIYLRDTAATMAERNQQIA 274
>gi|166713005|ref|ZP_02244212.1| beta lactamase [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 313
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 66/228 (28%), Gaps = 6/228 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
L D+ TG + + D + S K + A V + + K LT + I +
Sbjct: 55 LFDSATGWRLGQR-EDERFPMCSTFKFVLAAAVLQRVDQGKLTLTQRVKIRASDMLEHAP 113
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G ++++ + ++ S N A + F++ + +
Sbjct: 114 VTERHVGGSLSVGELCRATMIYSDNPAANVLFPLVGDPAGLTGFLRGIGDAQTRSDRYEP 173
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T A A L + D Q Q+ I + + A T
Sbjct: 174 EMNRFAAGDPRDTTTPAAMAATLRTLLLGDALQPSSRTQLTDWMIDNRTGDDCLRAGLTR 233
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQS---LIAVILGALDRNTRNKV 255
G KTG N +A L+ L + +
Sbjct: 234 EWKIGDKTGSNGTDTRNDIAILWPPKGRAPLLLTTYLNGAKVDDAARD 281
>gi|281335962|gb|ADA62538.1| CTX-M-32-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|255017615|ref|ZP_05289741.1| hypothetical protein LmonF_07370 [Listeria monocytogenes FSL
F2-515]
Length = 77
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 189 QIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALD 248
+ KG K +TN ++G+ G DG+KTGFT +G+ + +A +G + +I+++L A
Sbjct: 13 KPTVTTDKGAKLESTNDSLGSIQGLDGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGT 72
Query: 249 RNT 251
Sbjct: 73 AEK 75
>gi|311895702|dbj|BAJ28110.1| putative D-alanyl-D-alanine carboxypeptidase precursor
[Kitasatospora setae KM-6054]
Length = 529
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A+ +++ L+ + +LD TG V+ P PAS K +T
Sbjct: 41 VALTADLDALLADSRLANAQTGVEVLDAATGQVLYARQPQALLTPASTLKTVTTAAALD 99
>gi|291445686|ref|ZP_06585076.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
15998]
gi|291348633|gb|EFE75537.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces roseosporus NRRL
15998]
Length = 458
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
A+ + P + +++DT TG + P PAS K+ TA
Sbjct: 78 TAALRDTLAPLIGDPGLGDKVAASVIDTATGEQLYGQGATTPMTPASTIKIATATAAL 135
>gi|239942231|ref|ZP_04694168.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
roseosporus NRRL 15998]
Length = 491
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
A+ + P + +++DT TG + P PAS K+ TA
Sbjct: 111 TAALRDTLAPLIGDPGLGDKVAASVIDTATGEQLYGQGATTPMTPASTIKIATATAAL 168
>gi|288576342|ref|ZP_05978622.2| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria mucosa ATCC 25996]
gi|288565699|gb|EFC87259.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria mucosa ATCC 25996]
Length = 480
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
M + + + + ++G VI + D NPAS KL+TA+ F
Sbjct: 23 LCLMPFSAYALNLGNIPPDEISVYVQELDSGKVIESHRADASVNPASTMKLVTAFSAFEA 82
>gi|166344061|gb|ABY86753.1| beta-lactamase CTX-M1 [Escherichia coli]
Length = 271
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 64/242 (26%), Gaps = 19/242 (7%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M V + + +L + I K+ +
Sbjct: 36 ADNSQILY--RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 93
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 94 KHVDGTMSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLN 153
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 154 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 209
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSM 262
G KTG N +A D+ LI V A R +A +++
Sbjct: 210 ASWVVGDKTGSGDYGTTNDIAVIWPKDRAPLILVTYFTQPQPKAESRRDVLASAAKIVTN 269
Query: 263 GF 264
G
Sbjct: 270 GL 271
>gi|251981|gb|AAB22638.1| beta-lactamase, penicillin amido-beta-lactam hydrolase {EC 3.5.2.6}
[Escherichia coli, strain MEN-1, Peptide Plasmid, 263
aa]
Length = 263
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 64/242 (26%), Gaps = 19/242 (7%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M V + + +L + I K+ +
Sbjct: 28 ADNSQILY--RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 85
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 86 KHVDGTMSLAELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLN 145
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 146 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 201
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSM 262
G KTG N +A D+ LI V A R +A +++
Sbjct: 202 ASWVVGDKTGSGDYGTTNDIAVIWPKDRAPLILVTYFTQPQPKAESRRDVLASAAKIVTN 261
Query: 263 GF 264
G
Sbjct: 262 GL 263
>gi|126256518|gb|ABO09821.1| extended-spectrum beta-lactamase [Escherichia coli]
gi|205362238|gb|ACI03938.1| CTX-M-79 beta-lactamase [Escherichia coli]
gi|281335920|gb|ADA62517.1| CTX-M-79 beta-lactamase [synthetic construct]
Length = 291
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|307331150|ref|ZP_07610277.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces violaceusniger Tu 4113]
gi|306883230|gb|EFN14289.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces violaceusniger Tu 4113]
Length = 524
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D ++G + + D PAS TKL T+
Sbjct: 56 AAGVVVADADSGAALYRHRADDRLMPASNTKLFTSAAAM 94
>gi|75764732|ref|ZP_00744138.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74487777|gb|EAO51587.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 47
Score = 46.1 bits (107), Expect = 0.008, Method: Composition-based stats.
Identities = 7/45 (15%), Positives = 13/45 (28%)
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRK 271
+ + I+V++ R + L GF N
Sbjct: 1 MLYWYGERNAMRFISVVIKTSSHTARFDETKKLYDYGFANFGSET 45
>gi|313766534|gb|ADR80609.1| SHV-122 beta-lactamase [Klebsiella pneumoniae]
Length = 287
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 35/271 (12%), Positives = 68/271 (25%), Gaps = 36/271 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN----KLPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------VQH 161
I S N A + ++ + + +G + T G
Sbjct: 121 AAITMSDNSAANLLLATV-----GGPAGLTAFLRQIGDNVTRLDPPGGTELNEALPGDAR 175
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
T A A L + + Q+ + + +V KTG
Sbjct: 176 DTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-- 233
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 234 ----------AGERGARGIVALLGPNNKAER 254
>gi|160871813|ref|ZP_02061945.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rickettsiella grylli]
gi|159120612|gb|EDP45950.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rickettsiella grylli]
Length = 497
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+TG +I + + + PAS KL T +
Sbjct: 69 LSTGKIIYQYNANRRFIPASTLKLFTGIAALEY 101
>gi|229011761|ref|ZP_04168943.1| Beta-lactamase [Bacillus mycoides DSM 2048]
gi|228749558|gb|EEL99401.1| Beta-lactamase [Bacillus mycoides DSM 2048]
Length = 348
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 62/230 (26%), Gaps = 7/230 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ + L IT +K+
Sbjct: 111 IDTGTNRTIAYR-PNERFAFASTYKALAAGVLLQQNSTE--KLNEVITYTKDDLVEYSPV 167
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++ M +
Sbjct: 168 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRQMGDRVTMADRFEPE 227
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 228 LNEATPGDIRDTSTAKAIATNLKAFTVGNALPADKRKILTEWMKGNATGDKLIRAGVPTD 287
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLL 260
G K+G N +A ++ +I IL + D L+
Sbjct: 288 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD-NKLI 336
>gi|308233897|ref|ZP_07664634.1| D-alanyl-D-alanine carboxypeptidase [Atopobium vaginae DSM 15829]
gi|328943375|ref|ZP_08240840.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
[Atopobium vaginae DSM 15829]
gi|327491344|gb|EGF23118.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
[Atopobium vaginae DSM 15829]
Length = 315
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 40/255 (15%), Positives = 74/255 (29%), Gaps = 26/255 (10%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+++ D N + ASL+KL S L +
Sbjct: 61 DALAFSVYDMNANTYLFYEGAGQEPTVASLSKLFAIDYALSK-----VKLDDVFEANDET 115
Query: 87 SE--YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-----------CKTEKK 133
+ S+ T T ++ ++V S ND A +A ++ +
Sbjct: 116 LKLVPAGSSMANLTRGTYTAKQIMQAMLVPSGNDAAYVMAYNIGKMDLGAGHSAKEYINH 175
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
FV+ + G T + G + + DF + +
Sbjct: 176 FVKSLRTYLAREGYGKTDLYDPSGFSMQATTNLDDINRVTLKLLDYDFVKECMGESSFTI 235
Query: 194 EIKGKKYPNTNWAVGTFL-------GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
K + N G+KTG T AS +NI+A + + + L A
Sbjct: 236 TTKQGNFTWKNTNEFLDKESLFYNRYIKGVKTG-TFASSYNIIALYENNGKRYLIICLAA 294
Query: 247 LDRNTRNKVSASLLS 261
R + + ++
Sbjct: 295 HSNKDRYQAVQAAIN 309
>gi|239988697|ref|ZP_04709361.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
roseosporus NRRL 11379]
Length = 474
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ P + +++DT TG + P PAS K+ TA
Sbjct: 100 TLAPLIGDPGLGDKVAASVIDTATGEQLYGQGATTPMTPASTIKIATATAAL 151
>gi|300778859|ref|ZP_07088717.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Chryseobacterium gleum ATCC 35910]
gi|300504369|gb|EFK35509.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Chryseobacterium gleum ATCC 35910]
Length = 489
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ D T VI+ + P PAS TKL+T + L E +T
Sbjct: 83 VVYDPKTKKVISSYNENTPLVPASTTKLLTTETALNMLGENYRWMTQLEY 132
>gi|133919284|emb|CAM12805.1| class A beta-lactamase [Leminorella richardii]
Length = 295
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 37/211 (17%), Positives = 62/211 (29%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + +L+ K+ S+ N
Sbjct: 60 ADNSQIVY--RGDERFAMCSTSKVMAAAAVLKQSETDSRVLSKKRCDYKSRSDQLEPNCQ 117
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
G+ MTL + S N I L EK F + + +T+ L +
Sbjct: 118 EALGAGMTLAEMSAATLQYSDNTAMNKILTHLGGPEKVTAFARSIGDTTYRLDRTEPALN 177
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A T L + Q+ + A
Sbjct: 178 SALPGDPRDTTTPLAMAKSLRSLTLDNALGETQRAQLVEWMKGNTTGDASIRAGLPKNWI 237
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A ++ LI V
Sbjct: 238 VGDKTGSGDYGTTNDIAVIWPENRAPLILVT 268
>gi|226225919|ref|YP_002760025.1| D-alanyl-D-alanine carboxypeptidase [Gemmatimonas aurantiaca T-27]
gi|226089110|dbj|BAH37555.1| D-alanyl-D-alanine carboxypeptidase [Gemmatimonas aurantiaca T-27]
Length = 545
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
++ + G + D P PAS KL T+ + F L +
Sbjct: 110 GAIVVSISRGDTLFARGADAPMVPASTMKLFTSAIAFEKLGPEH 153
>gi|220683460|gb|ACL80551.1| TEM beta-lactamase [Salmonella enterica subsp. enterica serovar
Enteritidis]
gi|220683462|gb|ACL80552.1| TEM beta-lactamase [Salmonella enterica subsp. enterica serovar
Bonn]
Length = 103
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 33/94 (35%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y LD N+G ++ P+ + S K++ V S + + L I S+N
Sbjct: 3 GYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE 62
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ MT+ I S N A +
Sbjct: 63 YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLL 96
>gi|327439633|dbj|BAK15998.1| beta-lactamase class A [Solibacillus silvestris StLB046]
Length = 261
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 76/233 (32%), Gaps = 12/233 (5%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ + D T ++ +N + ++ AS+ K+ + + L++ L I+ +
Sbjct: 17 HVIVEDYKTNEIVWKNRAEEIFSSASIIKVPILIAILAHLQKTNGSLNQVFKIAPE-NMV 75
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
S T +K TL L + + S N + L + N+ +GL
Sbjct: 76 DFSVITEQKQIRATLHELLLWMTITSDNTATNVCIDLL------GMDAFNDYFNEIGLHN 129
Query: 150 THFMNAHGVVQ-----HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
T + + TTA+DM L +I + + + ++ +
Sbjct: 130 TRVQRKMMDFERQKLGFDNVTTAQDMQQLFRKIYRGTLLTSEWNAVALDILSRQRSHESL 189
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
KTG + ++ I V + + N + + +
Sbjct: 190 KRYIADDVKMAHKTGGLDTVDHDTGIVFLEVRDYFIGVFITEVTDNDKARQTI 242
>gi|313835714|gb|EFS73428.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL037PA2]
gi|314928386|gb|EFS92217.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL044PA1]
gi|314970192|gb|EFT14290.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL037PA3]
gi|328908033|gb|EGG27792.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium sp. P08]
Length = 456
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A A+ + + + ++D TG + ++ D PAS K++TA +
Sbjct: 70 VAAAIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQDSFLTPASNLKVLTAIALLD 126
Query: 68 FLKEKK 73
Sbjct: 127 CTDAGH 132
>gi|256419859|ref|YP_003120512.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Chitinophaga pinensis
DSM 2588]
gi|256034767|gb|ACU58311.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Chitinophaga pinensis
DSM 2588]
Length = 440
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 29/252 (11%), Positives = 60/252 (23%), Gaps = 18/252 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI----------------AETNKLPYYT-LLDTNTGHVIA 43
MR F ++++ +L + ++ A + + + TG
Sbjct: 1 MRSFRIVLSACLLLSFIKPVAAQYGPIRKWAEEELLTSAPLKQAHTGISIYEPATGKYWY 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
DH + PAS TK+ T Y L + L T S + + +
Sbjct: 61 NYQEDHYFTPASNTKIFTLYTGLRLLGDSLPALRYFRTDSALYVKGMADPAFLHPDYNVQ 120
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-LSATHFMNAHGVVQHG 162
L + + AI + + + + L +
Sbjct: 121 PAWQLLQQASQPIVLVPAAIENKRFGSGWAWSDYADYYQPELNEWPVYGNVARVRHHGDS 180
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
R + + I G TG +
Sbjct: 181 TLIWPRMFNDTVHFSVHRNDKLEELLTERDERINRFSVTYNGNDKSVQEGEIPFITGGSD 240
Query: 223 ASGFNIVASAIQ 234
+ + + +
Sbjct: 241 DLVYRLQDTLHK 252
>gi|78063696|ref|YP_373604.1| Beta-lactamase [Burkholderia sp. 383]
gi|77971581|gb|ABB12960.1| Beta-lactamase [Burkholderia sp. 383]
Length = 269
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 32/265 (12%), Positives = 63/265 (23%), Gaps = 20/265 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAEN-YPDHPWNPASLTKL 59
M+ + + + S A + D TG V+ + PAS K+
Sbjct: 1 MKHWRRALFTFAAGLLAASTSHARPICT---VVADAATGQVLVQQGDCATRVTPASTFKV 57
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ + F K TP + +
Sbjct: 58 AISLMGFDAGVLK--DAHTPTLDFHAGYPDWGGAPWREPTDPARWMKLSVFWYSQQVTQA 115
Query: 120 A--VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
+ + G+ + + R +A + +
Sbjct: 116 LGQARFQRYTNAFGYGNADVTSQQGELNGVMGAWVNASLRISPLEQVGFMRKIANRTLPV 175
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + G T G+ G K + A G+ V A +G +
Sbjct: 176 SAHAFDMTERITLIDTQPDGWVVH-----GKTGTGSPGRKYDASHAYGW-FVGWAAKGPR 229
Query: 238 SLIAVILGALDRNT------RNKVS 256
L+ L D+ R + +
Sbjct: 230 KLVFAYLMQDDKRQTPNAGLRARDT 254
>gi|82655082|emb|CAJ19610.1| OKP-B beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 45.7 bits (106), Expect = 0.009, Method: Composition-based stats.
Identities = 43/270 (15%), Positives = 73/270 (27%), Gaps = 14/270 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNP 53
R L+ + A+ +F E K+ Y +D +G +A +
Sbjct: 5 RLCLISLIAALPLAVFASPQPLEQIKISEGQLAGRVGYVEMDLASGRTLAAWRASERFPL 64
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
S K++ V + + L I + S MT+ I
Sbjct: 65 MSTFKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAIT 124
Query: 114 KSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
S N + + F++ + + L T A T A
Sbjct: 125 MSDNSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAT 184
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
L + T Q+ + + AV KTG IVA
Sbjct: 185 TLRKLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTGAGERGSRGIVAL 244
Query: 232 AIQGDQ--SLIAVILG--ALDRNTRNKVSA 257
+ ++ + L A RN+ A
Sbjct: 245 LGPDGKAERIVVIYLRDTAATMAERNQQIA 274
>gi|313894580|ref|ZP_07828143.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
F0412]
gi|313440770|gb|EFR59199.1| conserved hypothetical protein [Veillonella sp. oral taxon 158 str.
F0412]
Length = 272
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 32/233 (13%), Positives = 67/233 (28%), Gaps = 13/233 (5%)
Query: 30 YYTLL---DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
Y +L D +IA + ASL K++ VF + ++ L + +SK
Sbjct: 28 SYVVLQFDDEEEPTLIASRGEHTVHSSASLIKVLIMEYVFHLARAEQLDLNDTVPLSKTP 87
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
G L L++ +++IA + ++ ++++N ++ LG
Sbjct: 88 RVEGGGALQELVGKHSFTYLELCRLMMVLSDNIATNLLITVL-----GMENINARAEKLG 142
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY---FQIKGLEIKGKKYPNT 203
+ M ++ + + I G++
Sbjct: 143 VDEIELNRMMMDFDALAEGRDNHMTAMALARLYKHIFEYRDRDAYGCEMWNILGRQQFRD 202
Query: 204 NWAVGTFLGA-DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
G KT + ++L + N R K
Sbjct: 203 ILPFYWGEGIRFHHKTASLDRVEHDGGVLETLRGH-FCFILLMSDIDNDRGKE 254
>gi|302331468|gb|ADL21662.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
pseudotuberculosis 1002]
Length = 394
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D TG V+ + PAS TKL+TA
Sbjct: 71 GAMITDITTGEVVLSQNAEVALTPASSTKLLTAAAALYE 109
>gi|302206901|gb|ADL11243.1| D-Ala-D-Ala carboxypeptidase 3 (S13) [Corynebacterium
pseudotuberculosis C231]
gi|308277155|gb|ADO27054.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
pseudotuberculosis I19]
Length = 417
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D TG V+ + PAS TKL+TA
Sbjct: 94 GAMITDITTGEVVLSQNAEVALTPASSTKLLTAAAALYE 132
>gi|300859212|ref|YP_003784195.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
pseudotuberculosis FRC41]
gi|300686666|gb|ADK29588.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium
pseudotuberculosis FRC41]
Length = 417
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D TG V+ + PAS TKL+TA
Sbjct: 94 GAMITDITTGEVVLSQNAEVALTPASSTKLLTAAAALYE 132
>gi|134133899|gb|ABO61007.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 298
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 60/203 (29%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G + + D + S K M A V S + A+L + +
Sbjct: 57 LLDTASGRRL-GHRQDERFPMCSTFKSMLAATVLSQAERAPALLDRRVPVRDADLLSHAP 115
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + ++ S N A + F++ +T
Sbjct: 116 VTRRHAGKDMTVRDLCRATVITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEP 175
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + D Q Q+ I + A
Sbjct: 176 EMNSFAEGDPRDTTTPAAMAATLQRVVLGDVLQPASRQQLSDWLIDNETGDACLRAGLGK 235
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 236 RWRVGDKTGSNGEDARNDIAVLW 258
>gi|229133410|ref|ZP_04262238.1| Beta-lactamase [Bacillus cereus BDRD-ST196]
gi|228650083|gb|EEL06090.1| Beta-lactamase [Bacillus cereus BDRD-ST196]
Length = 348
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 64/230 (27%), Gaps = 7/230 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ + L IT +K+
Sbjct: 111 IDTGTNRTIAYR-PNERFAFASTYKALAAGVLLQQNSTE--KLNEVITYTKDDLVEYSPV 167
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N + K +K ++ M + T
Sbjct: 168 TEKHVDTGMTLGQIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRQMGDRVTMADRFETE 227
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + +
Sbjct: 228 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPADKRKILTEWMKGNATGDKLIRSGVPTD 287
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLL 260
G K+G N +A ++ +I IL + D L+
Sbjct: 288 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD-NKLI 336
>gi|159903676|ref|YP_001551020.1| Beta-lactamase class A [Prochlorococcus marinus str. MIT 9211]
gi|159888852|gb|ABX09066.1| Beta-lactamase class A [Prochlorococcus marinus str. MIT 9211]
Length = 356
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 26/152 (17%), Positives = 54/152 (35%), Gaps = 9/152 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
++ Y L + G A+ + AS K+ ++ L + K I ++K
Sbjct: 98 DLEVSAYILFE--DGR-YAQFNAEKSLPSASTIKIAILFLSLEMLDDGKLRWDEEIELTK 154
Query: 85 NASEYPPSNSTFK-KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ ++ G + +I S N A + E + + +N K
Sbjct: 155 ESIAKGAGWMRYQSLGKKFPIHEITTEMIRVSDNTAANLLIERV-----GGLDILNKRFK 209
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
LGL T + + + T+A+D++ +
Sbjct: 210 ELGLMQTEINSLLPDLSGTNKTSAKDLSKIMK 241
>gi|124263632|gb|ABM97538.1| beta-lactamase [Escherichia coli]
Length = 291
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTETTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|47569549|ref|ZP_00240228.1| beta-lactamase [Bacillus cereus G9241]
gi|47553805|gb|EAL12177.1| beta-lactamase [Bacillus cereus G9241]
Length = 301
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 57/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I P+ + AS K + A V+ L IT +K
Sbjct: 64 IDTGTNQTI-SYRPNERFAFASTYKALAAGVLLQQNSID--TLNEVITFTKEDLVDYSPV 120
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N K +K ++ M + T
Sbjct: 121 TEKHVDTGMKLGEIAEAAVRYSDNTAGNILFHKIGGPKGFEKALRKMGDRVTMSDRFETE 180
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + + A
Sbjct: 181 LNEAIPGDIRDTSTAKAIARNLKDFTIGNALPHQKRNILTDWMKGNATGDKLIRAGVPTD 240
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 241 WVVADKSGAGSYGTRNDIAIVWPPNRSPIIIAILSSKDEKEATYD 285
>gi|254967195|gb|ACT97650.1| TEM-1d beta-lactamase [mixed culture bacterium PE_gF3SD01_22]
Length = 128
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
S K++ V S + + L I S+N + MT+ ++
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVREYMQC 123
>gi|163748948|ref|ZP_02156199.1| penicillin-binding protein 4 [Shewanella benthica KT99]
gi|161331324|gb|EDQ02212.1| penicillin-binding protein 4 [Shewanella benthica KT99]
Length = 486
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ + TG +I E PD PAS KL+TA
Sbjct: 33 PPHSHTAIFATNLVTGDIIFEQNPDTLLLPASTMKLLTAVAA 74
>gi|82408911|gb|ABB73249.1| beta-lactamase PLA-6 [Raoultella planticola]
Length = 291
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G ++A D + S K++ V S + + L I +
Sbjct: 45 LDLASGQLLAGYRSDERFPMMSTFKVLLCGAVLSRVDAGEEQLDRRIHYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ +T+ I S N A + +L + F++H + + L T
Sbjct: 105 TEKHLTDGLTVGELCAAAITLSDNTAANLLLTTLGGPQGLTSFLRHSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ ++ K +V
Sbjct: 165 LNEARPGDVRDTTTPQAMARTLRNLLTGSVLSSASQQQLQRWMVEDKVAGPLLRSVLPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL-GAL-DRNTRNKVSASL 259
KTG I+A+ + ++ + L G + RNK A++
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGKAARIVVIYLTGTPATMDERNKQIAAI 276
>gi|228952860|ref|ZP_04114929.1| Beta-lactamase [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228806816|gb|EEM53366.1| Beta-lactamase [Bacillus thuringiensis serovar kurstaki str.
T03a001]
Length = 312
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--TLNEVITFTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++HM + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIAMNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I VIL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIVILSSKDEKEATYD 296
>gi|229060183|ref|ZP_04197552.1| Beta-lactamase [Bacillus cereus AH603]
gi|228719065|gb|EEL70677.1| Beta-lactamase [Bacillus cereus AH603]
Length = 348
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ L IT +K+
Sbjct: 111 IDTGTNRTIAYR-PNERFAFASTYKALAAGVLLQQNSID--KLNEVITYTKDDLVEYSPI 167
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++ M +
Sbjct: 168 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRQMGDRITMADRFEPE 227
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 228 LNEATPGDIRDTSTAKAIATNLKAFTVGNALPAHKRNILTEWMKGNATGDKLIRAGVPTD 287
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 288 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 332
>gi|226311564|ref|YP_002771458.1| hypothetical protein BBR47_19770 [Brevibacillus brevis NBRC 100599]
gi|226094512|dbj|BAH42954.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 270
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 34/270 (12%), Positives = 82/270 (30%), Gaps = 12/270 (4%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
MLS++F +S + + + D TG + D + AS+ K+ VF+
Sbjct: 1 MLSSLFAQISSLIKDAGGEWGIFFEDLQTGETL-SINEDQRFYAASVIKIPIMTAVFAEA 59
Query: 70 KEKKAMLTTPITI-SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--S 126
K I + + + G+ T+ + + L+I++S N + +
Sbjct: 60 YAGKFAFEDKIKLRTDDLVGGAGVLQHMTPGTEFTIRDLVTLMIIQSDNTATNMMIDLVG 119
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH 186
+ S+ G + + L+ + +
Sbjct: 120 TESIRNAMQKTEMKNSQFHNKLMVVPAELEGYNEVTAKDMGSHLRYLATGKIISYDSCLK 179
Query: 187 YFQIKGLEIKGKKYPNTNWAVGTF------LGADGMKTGFTCASGFNIVASAIQGDQSLI 240
I + ++ P KTG ++ I +
Sbjct: 180 MVAILKTQQHRERIPFLLPDPDGDVIGTIPKWEFANKTGSVTKITHDVGILYIGSHAVTL 239
Query: 241 AVILGALDRNTRNKVSASLLSMGFYNKTDR 270
+++ L++ V A + ++ ++ + +
Sbjct: 240 SILNKGLEQKDAANVMAQIGNLVYHAYSQK 269
>gi|158312165|ref|YP_001504673.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Frankia sp. EAN1pec]
gi|158107570|gb|ABW09767.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Frankia sp. EAN1pec]
Length = 495
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
P ++D TG V+ N P P PAS K+
Sbjct: 73 PVLGGPATLVVDALTGQVLFANRPTEPTAPASTVKI 108
>gi|228921220|ref|ZP_04084549.1| Beta-lactamase [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228838435|gb|EEM83747.1| Beta-lactamase [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
Length = 312
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 36/229 (15%), Positives = 60/229 (26%), Gaps = 6/229 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
++DT T I P+ + AS K + A V+ L IT +K
Sbjct: 71 GVYVIDTGTNQTI-SYRPNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVD 127
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGL 147
+ + M L + + S N + K +K ++HM +
Sbjct: 128 YSPVTEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSDR 187
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
T A T L + + A
Sbjct: 188 FETELNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAG 247
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 248 VPTDWVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|115027|sp|P16897|BLP4_PSEAE RecName: Full=Beta-lactamase PSE-4; AltName: Full=Beta-lactamase
CARB-1; AltName: Full=Carbenicillinase 1; Flags:
Precursor
gi|15384484|gb|AAK96394.1|AF313471_2 PSE-4 beta-lactamase [Pseudomonas aeruginosa]
Length = 288
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 121 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 181 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 240
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 241 TAVVWSEHQAPIIV 254
>gi|126737404|ref|ZP_01753139.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter sp. SK209-2-6]
gi|126721989|gb|EBA18692.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter sp. SK209-2-6]
Length = 495
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
IA+++ S L + + D +G ++ + D PAS+ K +TA
Sbjct: 37 IALSVPSGGLKALLAEAGLRGQIACAVADAASGKLLEAHAGDMELPPASVAKALTALYAL 96
Query: 67 S 67
Sbjct: 97 D 97
>gi|18845080|gb|AAL79541.1|AF473577_1 beta-lactamase K1 [Klebsiella oxytoca]
gi|60416701|emb|CAI43415.1| beta-lactamase [Klebsiella oxytoca]
Length = 290
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 40/238 (16%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L D Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A D LI V A +R +A +++ G
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPEDHAPLILVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 290
>gi|296128484|ref|YP_003635734.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Cellulomonas flavigena DSM 20109]
gi|296020299|gb|ADG73535.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Cellulomonas flavigena DSM 20109]
Length = 470
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++D TG V+A + PD PAS K++T + L
Sbjct: 99 VVDQLTGEVLASHAPDEGLVPASTAKVLTGIAALTALDP 137
>gi|11095254|gb|AAG29813.1|AF275256_1 carbapenem-hydrolyzing class A beta-lactamase Sme-2 [Serratia
marcescens]
Length = 294
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 38/260 (14%), Positives = 67/260 (25%), Gaps = 19/260 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-------------YYTLLDTNTGHVIAENYPD 48
+ + ++ + + F + +DT +G+ D
Sbjct: 8 KTASFLFSVCLALSAFNAHANKSDAAAKQIKKLEEDFDGRIGVFAIDTGSGNT-FGYRSD 66
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K A V +++KK + + EY +T KGS MTL +
Sbjct: 67 ERFPLCSSFKGFLAAAVLERVQQKKLDINQKVKYESRDLEYHSPITTKYKGSGMTLGDMA 126
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN---LGLSATHFMNAHGVVQHGHYT 165
+ S N I E + + M + N L A + T
Sbjct: 127 SAALQYSDNGATNIIMERFLGGPEGMTKFMRSIGDNEFRLDRWELELNTAIPGDKRDTST 186
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF--TCA 223
L+ + + A G KTG
Sbjct: 187 PKAVANSLNKLALGNVLNAKEKAIYQNWLKGNTTGDARIRASVPADWVVGDKTGSCGAYG 246
Query: 224 SGFNIVASAIQGDQSLIAVI 243
+ + + LI I
Sbjct: 247 TANDYAVIWPKNRAPLIVSI 266
>gi|126149281|dbj|BAF47413.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 256
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 39/202 (19%), Positives = 62/202 (30%), Gaps = 3/202 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G I + D + S K M A V S + A+L + + +
Sbjct: 56 LLDTASGRRI-SHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAP 114
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +T
Sbjct: 115 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEP 174
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + + Q Q+ I + A
Sbjct: 175 ELNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGK 234
Query: 211 LGADGMKTGFTCASGFNIVASA 232
G KTG N +A A
Sbjct: 235 RWRVGDKTGSNGEDARNDIAVA 256
>gi|584849|sp|Q03170|BLP1_PSEAE RecName: Full=Beta-lactamase PSE-1; AltName: Full=Beta-lactamase
CARB-2; AltName: Full=Carbenicillinase 2; Flags:
Precursor
gi|12719033|gb|AAK02055.1|AF261825_24 beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|13940488|gb|AAK50386.1|AF313472_2 PSE-1/CARB-2 beta-lactamase [Pseudomonas aeruginosa]
gi|47648|emb|CAA79480.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|151076|gb|AAA25741.1| beta-lactamase [Pseudomonas aeruginosa]
gi|4063857|gb|AAC98498.1| beta-lactamase Pse-1 precursor [Salmonella typhimurium DT104]
gi|44894284|gb|AAS48663.1| PSE-1/CARB-2 beta-lactamase [Pseudomonas aeruginosa]
gi|54303993|emb|CAH04650.1| beta-lactamase [Pseudomonas aeruginosa]
gi|76781023|gb|ABA54431.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|77562729|gb|ABB00019.1| PSE-1/CARB-2 beta-lactamase [Pseudomonas aeruginosa]
gi|82400278|gb|ABB72857.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|82653449|emb|CAG23929.1| CARB-2/PSE-1 [Pseudomonas aeruginosa]
gi|82880019|gb|ABB92631.1| CARB-8 beta-lactamase [Pseudomonas aeruginosa]
gi|83627321|dbj|BAE54322.1| beta-lactamase [Escherichia coli]
gi|87047967|gb|AAQ18906.2| beta-lactamase Pse-1 precursor [Salmonella typhimurium DT104]
gi|88911230|gb|ABD58906.1| PSE-1 [Pseudomonas aeruginosa]
gi|94960157|gb|ABF47920.1| beta-lactamase PSE-1 [Acinetobacter baumannii]
gi|112216508|gb|ABI14023.1| beta-lactamase PSE-1 [Acinetobacter baumannii]
gi|114147179|gb|ABI50466.1| BlaP1 [Klebsiella pneumoniae]
gi|114147193|gb|ABI50479.1| BlaP1 [Klebsiella pneumoniae]
gi|116119373|gb|ABJ80648.1| beta-lactamase PSE-1 [Pseudomonas aeruginosa]
gi|117580234|dbj|BAF36545.1| PSE-1/CARB-2 beta-lactamase [Proteus mirabilis]
gi|219664350|gb|ACL31204.1| PSE-1 [Pseudomonas aeruginosa]
gi|226424708|gb|ACO53364.1| PSE-1/CARB-2 beta-lactamase [Pseudomonas aeruginosa]
gi|242322377|emb|CAZ48630.1| beta-lactamase PSE-1 [Pseudomonas aeruginosa]
gi|260400139|gb|ACX36848.1| CARB-8 beta-lactamase [Stenotrophomonas maltophilia]
gi|293631834|gb|ADE59428.1| Bla-PSE1 [Salmonella enterica subsp. enterica serovar Havana]
gi|320151865|gb|ADW23164.1| PSE-1/CARB-2 carbenicillinase [Pseudomonas aeruginosa]
gi|325491829|gb|ADZ16826.1| beta-lactamase PSE-1 [Pseudomonas aeruginosa]
gi|330885919|gb|AEC47401.1| beta-lactamase [Burkholderia cepacia]
gi|330885936|gb|AEC47413.1| beta-lactamase [Pseudomonas putida]
Length = 288
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 121 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 181 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 240
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 241 TAVVWSEHQAPIIV 254
>gi|7243955|gb|AAB37395.2| SHV-5a [Klebsiella pneumoniae]
Length = 285
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 35/265 (13%), Positives = 68/265 (25%), Gaps = 26/265 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D + + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLAS-RTLTAWRADE 59
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 60 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 119
Query: 110 LLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N A + ++ F++ + + L T A T A
Sbjct: 120 AAITMSDNSAANLLLRTVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDARDTTTPA 179
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + +V KTG
Sbjct: 180 SMAATLRNVLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-------- 231
Query: 228 IVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 232 ----ASKRGARGIVALLGPNNKAER 252
>gi|19852070|gb|AAL99990.1|AF488377_1 CTX-M type beta-lactamase [Escherichia coli]
Length = 291
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTETTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|56548638|gb|AAV93320.1| CTX-M-2-like beta-lactamase precursor [Kluyvera intermedia]
Length = 276
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 50 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 107
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 108 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 167
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 168 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIQAGLPKSWV 227
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 228 VGDKTGSGDYGTTNDIAIIWPENHAPLVLVT 258
>gi|76057845|emb|CAG25813.2| OKP-B beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 45.7 bits (106), Expect = 0.010, Method: Composition-based stats.
Identities = 43/270 (15%), Positives = 74/270 (27%), Gaps = 14/270 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNP 53
R L+ + A+ +F E K+ Y +D +G ++A +
Sbjct: 5 RLCLISLIAALPLAVFASPQPLEQIKISEGQLAGRVGYVEMDLASGRMLAAWRASERFPL 64
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
S K++ V + + L I + S MT+ I
Sbjct: 65 MSTFKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAIT 124
Query: 114 KSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
S N + + F++ + + L T A T A
Sbjct: 125 MSDNSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAT 184
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
L + T Q+ + + AV KTG IVA
Sbjct: 185 TLRKLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTGAGERGSRGIVAL 244
Query: 232 AIQGDQ--SLIAVILG--ALDRNTRNKVSA 257
+ ++ + L A RN+ A
Sbjct: 245 LGPDGKAERIVVIYLRDTAATMAERNQQIA 274
>gi|219920907|emb|CAQ76631.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWRKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 263
>gi|22203991|gb|AAM92465.1| CARB-8 beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhi]
Length = 288
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 38/254 (14%), Positives = 80/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL++ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLVFSLLIPSVVFASSSKFRQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + I I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGKVNPNSTIEIKKADLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 121 TMTTSDNTAANIILSAVGGSKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 181 IASTLNKFLFGSALSEMNKKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 240
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 241 TAVVWSEHQAPIIV 254
>gi|28493294|ref|NP_787455.1| serine-type D-Ala-D-Ala carboxypeptidase [Tropheryma whipplei str.
Twist]
gi|28476335|gb|AAO44424.1| serine-type D-Ala-D-Ala carboxypeptidase [Tropheryma whipplei str.
Twist]
Length = 313
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 15/222 (6%)
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN--- 106
AS++K++ A ++ + + L I+ + + ++ K G +
Sbjct: 81 KHPIASISKVILALMLIE--RYSLSELNDGPNITYDTEDVSFFRNSVKDGDSYAPVYAGL 138
Query: 107 --ALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
LK ++ A A SL K + + GL T A G+
Sbjct: 139 TLTLKQSLIPLMLPSANNYATSLVKHLYGKSYPKFAREWLDKNGLYNTDIYEASGLDD-R 197
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+ +TA ++ +L+ + ++ + NTN A+G G DG+KTG +
Sbjct: 198 NVSTADNLIVLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNKALGIN-GIDGIKTGSSP 256
Query: 223 ASGFNIVASA---IQGD-QSLIAVILGALDRNTRNKVSASLL 260
A+ N++ +A + + V + +LL
Sbjct: 257 AAKSNLLFTAAIKTKNGLIRIYGVFKTEKSYASLYGKLDTLL 298
>gi|261349303|gb|ACX71212.1| beta-lactamase IMI-3 [Enterobacter cloacae]
Length = 292
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 34/265 (12%), Positives = 68/265 (25%), Gaps = 16/265 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDHPW 51
R ++ I+ + F + +++ LDT +G + +
Sbjct: 9 RIAILFISCLFSISFFSQANTKGIDEIKNLETDFNGRVGVYALDTGSGKS-FSYKANERF 67
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
S K A V ++ + L + + + E+ +T K + M+L +
Sbjct: 68 PLCSSFKGFLAAAVLKGSQDNQLNLNQIVNYNTRSLEFHSPITTKYKDNGMSLGDMAAAA 127
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMN---NTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N I E + + M + L A + T A
Sbjct: 128 LQYSDNGATNIILERYIGGPEGMTKFMRSIGDEDFRLDRWELDLNTAIPGDERDTSTPAA 187
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF--TCASGF 226
L + + A G KTG +
Sbjct: 188 VAKSLKTLALGNILSEREKETYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCGAYGTAN 247
Query: 227 NIVASAIQGDQSLIAVILGALDRNT 251
+ + LI + +
Sbjct: 248 DYAVVWPKNRAPLIISVYTTKNEKE 272
>gi|56463235|gb|AAV91759.1| beta-lactamase SHV [Escherichia coli]
Length = 248
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 32/221 (14%), Positives = 57/221 (25%), Gaps = 14/221 (6%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 20 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 79
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 80 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 139
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L + + Q+ + + +V
Sbjct: 140 LNEALPGDARDTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVADRVAGPLIRSVLPAG 199
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
K G A + I +LG ++ R
Sbjct: 200 WFIADKPG------------ASKRGARGIVALLGPNNKADR 228
>gi|294666051|ref|ZP_06731312.1| beta-lactamase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292604191|gb|EFF47581.1| beta-lactamase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 297
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 66/228 (28%), Gaps = 6/228 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLD+ TG + + + + S K + A V + + K L + I +
Sbjct: 55 LLDSATGKRLGQR-EEERFPMCSTFKFVLAAAVLQQVDQGKLTLAQQVKIHASDMLEHAP 113
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G ++++ + ++ S N A + F++ + +
Sbjct: 114 VTERHVGGSLSIGELCRATMIYSDNPAANLLFPLVGDPAGVTAFLRGVGDAQTRTDRYEP 173
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T A A L + D Q Q+ I + + A T
Sbjct: 174 EMNRFAAGDPRDTTTPAAMAATLRTLLLGDALQPASRKQLTDWMIDNRTGDDCLRAGLTA 233
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQS---LIAVILGALDRNTRNKV 255
G KTG N +A L+ L + +
Sbjct: 234 GWKIGDKTGSNGTDTRNDIAILWPPKGRGPLLLTTYLNGAKVDDAARD 281
>gi|76781025|gb|ABA54432.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 288
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 39/256 (15%), Positives = 75/256 (29%), Gaps = 19/256 (7%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKAELVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L + TT +
Sbjct: 121 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGK-LGDLRDTTTPK 179
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGFTCASGF 226
+A + Q K K N ++G
Sbjct: 180 AIASTLNKFLFGSALS-EMNQKKLESWMVKNQVTGNLLRSVMPAGWNIADRSGAGGFGAR 238
Query: 227 NIVASAIQGDQSLIAV 242
+I A Q+ I V
Sbjct: 239 SITAVVWSEHQAPIIV 254
>gi|283806794|pdb|2WYX|A Chain A, Neutron Structure Of A Class A Beta-Lactamase Toho-1
E166a R274n R276n Triple Mutant
Length = 256
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 24 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 81
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +A
Sbjct: 82 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTAPTLN 141
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 142 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 201
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 202 VGDKTGSGDYGTTNDIAVIWPENHAPLVLVT 232
>gi|23098817|ref|NP_692283.1| penicillin binding protein [Oceanobacillus iheyensis HTE831]
gi|22777044|dbj|BAC13318.1| penicillin binding protein [Oceanobacillus iheyensis HTE831]
Length = 459
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+TG + + D +PAS K++TA L
Sbjct: 29 ADTGDIYFSHNGDIRLHPASNMKILTAVAALKILGPGY 66
>gi|261378256|ref|ZP_05982829.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria cinerea ATCC 14685]
gi|269145338|gb|EEZ71756.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria cinerea ATCC 14685]
Length = 469
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRADVPVNPASTMKLITAFTAFK 70
>gi|51891859|ref|YP_074550.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
gi|51855548|dbj|BAD39706.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
Length = 259
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 27/233 (11%), Positives = 50/233 (21%), Gaps = 22/233 (9%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
L D TG + D ++PAS K+ A + K I +
Sbjct: 9 SVALEDLLTGQR-WLHNADRLYHPASTVKVPVALYALEQYRAGKIGWGDLIEYT------ 61
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+ + +M G
Sbjct: 62 --------EADVEPPLTGAFEAAEFGDLYPVQDLVHWALAYSDNVAVNMLGRRLGWGNIE 113
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG---KKYPNTNWA 206
G + H + + + + L ++ Y A
Sbjct: 114 RWTETIGGRLTHEDRLPRASALSVLQWWRHLHVLSLEDPERASLIVRPLLAATYRGRITA 173
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL--GALDRNTRNKVSA 257
K G S ++ + + I V+L GA ++
Sbjct: 174 GLPDGVPHMHKHGSYEGSYH--DSAIVYATRPYILVVLTEGAPLEEADAAIAR 224
>gi|1245355|gb|AAA93461.1| IMI-1 [Enterobacter cloacae]
Length = 292
Score = 45.7 bits (106), Expect = 0.011, Method: Composition-based stats.
Identities = 33/265 (12%), Positives = 67/265 (25%), Gaps = 17/265 (6%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP-----------YYTLLDTNTGHVIAENYPDHPW 51
+ ++ + ++S F + + LDT +G + +
Sbjct: 9 RIAILFSSCLVSISFFSQANTKGIDEIKDLETDFNGRIGVYALDTGSGKS-FSYKANERF 67
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
S K A V ++ + L + + + E+ +T K + M+L +
Sbjct: 68 PLCSSFKGFLAAAVLKGSQDNQLNLNQIVNYNTRSLEFHSPITTKYKDNGMSLGDMAAAA 127
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMN---NTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N I E + + M + L A + T A
Sbjct: 128 LQYSDNGATNIILERYIGGPEGMTKFMRSIGDKDFRLDRWELDLNTAIPGDERDTSTPAA 187
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF--TCASGF 226
L + + A G KTG +
Sbjct: 188 VAKSLKTLALGNILNEREKETYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCGAYGTAN 247
Query: 227 NIVASAIQGDQSLIAVILGALDRNT 251
+ + LI + +
Sbjct: 248 DYAVVWPKNRAPLIISVYTTKNEKE 272
>gi|218903638|ref|YP_002451472.1| beta-lactamase Bla1 [Bacillus cereus AH820]
gi|218535660|gb|ACK88058.1| beta-lactamase Bla1 [Bacillus cereus AH820]
Length = 306
Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 69 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 125
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 126 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRKMGDRVTMSDRFETE 185
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 186 LNEAIPGDIRDTSTAXAIARNLKAFTAGNALPNHKRNILTEWMKGNATGDKLIRAGVPTD 245
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 246 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYD 290
>gi|119434092|gb|ABL75154.1| OKP [Klebsiella pneumoniae]
Length = 275
Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 39/267 (14%), Positives = 69/267 (25%), Gaps = 13/267 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +IA L+ + + Y +D +G +A + S
Sbjct: 2 LISLIAALPLAVFASPQPLEQIKISESQLAGRVGYVEMDLASGRTLAAWRASERFPLMST 61
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 62 FKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 121
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + + F++ + + L T A T A L
Sbjct: 122 NSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMATTLR 181
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T + + + AV KTG IVA
Sbjct: 182 KLLTTPSLSARSQQLLLQWMVDDRVAGPLIRAVLPAGWFIADKTGAGERGSRGIVALLGP 241
Query: 235 GDQ--SLIAVILG--ALDRNTRNKVSA 257
+ ++ + L A RN+ A
Sbjct: 242 DGKAERIVVIYLRDTAATMAERNQQIA 268
>gi|216843|dbj|BAA02497.1| beta-lactamase precursor [Proteus mirabilis]
gi|2821951|dbj|BAA24531.1| carbenicillinase [Proteus mirabilis]
Length = 288
Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 80/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL++ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLVFSLLIPSVVFASSSKFRQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 121 TMTTSDNTAANIILSAVGGSKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 181 IASTLNKFLFGSALSEMNKKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 240
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 241 TAVVWSEHQAPIIV 254
>gi|6225088|sp|Q51355|BLC4_PSEAE RecName: Full=Beta-lactamase CARB-4; AltName: Full=Carbenicillinase
4; Flags: Precursor
gi|840931|gb|AAC09012.1| CARB-4 precursor [Pseudomonas aeruginosa]
gi|62719425|gb|AAX93311.1| carbenicillinase [Pseudomonas aeruginosa]
gi|62719430|gb|AAX93315.1| carbenicillinase [Pseudomonas aeruginosa]
gi|225393065|gb|ACN89662.1| beta-lactamase CARB-4 [Acinetobacter baumannii]
Length = 288
Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 77/254 (30%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFP-----------FLSIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+ L++ ++ + S +F I + +LDT TG + +
Sbjct: 2 KLLLVFSLLIPSMVFANSSKFQQVEQDAKVIEASLSAHIGISVLDTQTGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ + + I I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGEINPKSTIEIKKADLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I + ++ F++ + + L T
Sbjct: 121 TMTTSDNAAANIILNALGGPESVTDFLRQIGDKETRLDRIEPELNEGKLGDLRDTTTPNA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + +++ + + N +V ++G +I
Sbjct: 181 IVNTLNELLFGSTLSQDGQKKLEYWMVNNQVTGNLLRSVLPEGWNIADRSGAGGFGARSI 240
Query: 229 VASAIQGDQSLIAV 242
A QS I V
Sbjct: 241 TAVVWSEAQSPIIV 254
>gi|82400282|gb|ABB72859.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
Tallahassee]
Length = 288
Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 38/254 (14%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 121 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ LS + M+ +++ + + N +V ++G +I
Sbjct: 181 IASTLSKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 240
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 241 TAVVWSEHQAPIIV 254
>gi|281335990|gb|ADA62552.1| CTX-M-61-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|21685580|gb|AAM74565.1|AF409092_1 carbenicillin-hydrolyzing beta-lactamase [Vibrio cholerae
non-O1/non-O139]
Length = 288
Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 37/256 (14%), Positives = 76/256 (29%), Gaps = 16/256 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI-----------AETNKLP-YYTLLDTNTGHVIAENYPD 48
M+ L + A+ M S +F S + +LDT G + D
Sbjct: 1 MKSLL-VFALLMPSVVFASSSKFQSVEQEIKGIESSLSARIGVAILDTQNGES-WDYNGD 58
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K + + + K L + + I K + G +TL +A
Sbjct: 59 QRFPLTSTFKTIACAKLLYDAEHGKVNLNSTVEIKKADLVTYSPVLEKQVGKPITLSDAC 118
Query: 109 KLLIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + K+ F++ + + L T
Sbjct: 119 LATMTTSDNTAANIVINAVGDPKSITDFLRQIGDKETRLDRVEPELNEGKLGDLRDTTTP 178
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
+ L+ + +++ + + N +V + ++G
Sbjct: 179 NAITSTLNQLLFGSTLSEASQKKLESWMVNNQVTGNLLRSVLPVKWSIADRSGAGGFGAR 238
Query: 227 NIVASAIQGDQSLIAV 242
+I A ++ I V
Sbjct: 239 SITAIVWSEEKKPIIV 254
>gi|281335936|gb|ADA62525.1| CTX-M-52-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|281335912|gb|ADA62513.1| CTX-M-57-like beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.011, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 71/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGGVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|134133929|gb|ABO61022.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 298
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 59/203 (29%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G + + D + S K M A S + A+L + +
Sbjct: 57 LLDTASGRRL-GHRQDERFPMCSTFKSMLAATALSQAERAPALLDRRVPVRDADLLSHAP 115
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + ++ S N A + F++ +T
Sbjct: 116 VTRRHAGKDMTVRDLCRATVITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEP 175
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + D Q Q+ I + A
Sbjct: 176 EMNSFAEGDPRDTTTPAAMAATLQRVVLGDVLQPASRQQLSDWLIDNETGDACLRAGLGK 235
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 236 RWRVGDKTGSNGEDARNDIAVLW 258
>gi|229122048|ref|ZP_04251264.1| Beta-lactamase [Bacillus cereus 95/8201]
gi|228661391|gb|EEL17015.1| Beta-lactamase [Bacillus cereus 95/8201]
Length = 301
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 64 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 120
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 121 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRKMGDRVTMSDRFETE 180
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 181 LNEAIPGDIRDTSTAKAIARNLKAFTAGNALPNHKRNILTEWMKGNATGDKLIRAGVPTD 240
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 241 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYD 285
>gi|281336016|gb|ADA62565.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKVISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|312194204|ref|YP_004014265.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Frankia sp. EuI1c]
gi|311225540|gb|ADP78395.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Frankia sp. EuI1c]
Length = 494
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 18/62 (29%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A LS P ++D TG V+ + P PAS K A
Sbjct: 59 AALSGRLAGPFANPLLGSPAGLVVDGLTGKVLFDQRASVPTAPASTLKTAVAAAALRTFS 118
Query: 71 EK 72
Sbjct: 119 AG 120
>gi|281335986|gb|ADA62550.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|225175816|ref|ZP_03729809.1| Beta-lactamase class A-like protein [Dethiobacter alkaliphilus AHT
1]
gi|225168740|gb|EEG77541.1| Beta-lactamase class A-like protein [Dethiobacter alkaliphilus AHT
1]
Length = 356
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
D TG + + D PAS+ K + V +K ++ L
Sbjct: 112 YDFATGETL-SHNGDRVIFPASMIKTLYLAVFLEEVKHERQSLDAEY 157
>gi|281336014|gb|ADA62564.1| CTX-M-58-like beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|164514477|emb|CAP45560.1| class A beta-lactamase CTX-M-16 [Escherichia coli]
Length = 291
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 71/283 (25%), Gaps = 24/283 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+ A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVTAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNDTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
L Q+ + A G KTG N
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTGSGGYGTTND 248
Query: 229 VASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
+A + L+ V A R +A +++ G
Sbjct: 249 IAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAEGL 291
>gi|319426358|gb|ADV54432.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella putrefaciens 200]
Length = 504
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 14/91 (15%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNK-------------LPYYTL-LDTNTGHVIAENYPDH 49
L +++ + SI L LD +I D
Sbjct: 14 ILSFFSISTKATQANIPSIEPRTTTLSQNIADINPRHSQTALLALDLANNQIIYSQQADT 73
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
PAS K++TA + L + +T
Sbjct: 74 LLVPASTQKILTAVTAMAELGTEFRYVTELW 104
>gi|94971521|ref|YP_593569.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Koribacter
versatilis Ellin345]
gi|94553571|gb|ABF43495.1| D-Ala-D-Ala carboxypeptidase [Candidatus Koribacter versatilis
Ellin345]
Length = 518
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 3 QFLVIIAMAMLSNIFPFLS-----------IAETNKLPYYTL--LDTNTGHVIAENYPDH 49
+ + + +L ++ + A ++ + + + G + D
Sbjct: 5 RTIPALFFLVLIALYAPAADKLSSKIDRVLSAPDVSRAFWGIEIVSLDNGKTLYSRNSDK 64
Query: 50 PWNPASLTKLMTAYVVF 66
+ PAS TKL T F
Sbjct: 65 LFTPASNTKLFTTSTAF 81
>gi|281336006|gb|ADA62560.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|229544070|ref|ZP_04433129.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacillus coagulans 36D1]
gi|229325209|gb|EEN90885.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacillus coagulans 36D1]
Length = 495
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 23/89 (25%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDT---------------NT 38
++++VI MA L A + +L+ ++
Sbjct: 3 KRWVVIWTMAFLFIQGTGPYAAGDREGCGKKETDAKIAGILEAAPLKGGIVAISVRSADS 62
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFS 67
G ++ E + PAS KL+TA
Sbjct: 63 GKLLYEQNGNTLLRPASNMKLLTAAAALE 91
>gi|145296695|ref|YP_001139516.1| hypothetical protein cgR_2600 [Corynebacterium glutamicum R]
gi|140846615|dbj|BAF55614.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 427
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
D +G V+ E PAS TK++TA V
Sbjct: 88 DVESGEVVWEQNQGTAVRPASATKILTAAVALYE 121
>gi|21325471|dbj|BAC00093.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[Corynebacterium glutamicum ATCC 13032]
Length = 411
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
D +G V+ E PAS TK++TA V
Sbjct: 72 DVESGEVVWEQNQGTAVRPASATKILTAAVALYE 105
>gi|19553893|ref|NP_601895.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium glutamicum
ATCC 13032]
gi|62391536|ref|YP_226938.1| penicillin-binding protein, D-Ala-D-Ala carboxypeptidase
[Corynebacterium glutamicum ATCC 13032]
gi|41326878|emb|CAF20722.1| PENICILLIN-BINDING PROTEIN, D-ALA-D-ALA CARBOXYPEPTIDASE
[Corynebacterium glutamicum ATCC 13032]
Length = 427
Score = 45.4 bits (105), Expect = 0.012, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
D +G V+ E PAS TK++TA V
Sbjct: 88 DVESGEVVWEQNQGTAVRPASATKILTAAVALYE 121
>gi|281335934|gb|ADA62524.1| CTX-M-52-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|229170639|ref|ZP_04298283.1| Beta-lactamase [Bacillus cereus AH621]
gi|228612799|gb|EEK69980.1| Beta-lactamase [Bacillus cereus AH621]
Length = 348
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 62/230 (26%), Gaps = 7/230 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ + L IT +K+
Sbjct: 111 IDTGTNRTIAYR-PNERFAFASTYKALAAGVLLQQNSTE--KLNEVITYTKDDLVEYSPI 167
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++ M +
Sbjct: 168 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRQMGDRVTMADRFEPE 227
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 228 LNEATPGDIRDTSTAKAIATNLKAFTVGNALPADKRKILTEWMKGNATGDKLIRAGVPTD 287
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLL 260
G K+G N +A ++ +I IL + D L+
Sbjct: 288 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKDATYD-NKLI 336
>gi|78057322|gb|ABB17185.1| CTX-M-52 beta-lactamase [Klebsiella pneumoniae]
gi|281335922|gb|ADA62518.1| CTX-M-52 beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|330447388|ref|ZP_08311037.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328491579|dbj|GAA05534.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 467
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL------PYYTLLDTNTGHVIAENYPDHPWNPAS 55
++ L MA + F S + +++ T VI + D PAS
Sbjct: 3 KKLLCSALMATSFSSFAAFSPQQAINQLPKGSDVTLLIVNPATNKVIYDKRADELQAPAS 62
Query: 56 LTKLMTAYVV 65
K +TA
Sbjct: 63 TQKTITALAA 72
>gi|94502850|gb|ABF29655.1| beta-lactamase [Enterobacter cloacae]
Length = 256
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 35/215 (16%), Positives = 58/215 (26%), Gaps = 6/215 (2%)
Query: 33 LLDT-NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+DT + V+ D + S +K+M A V + +K +L P+ I
Sbjct: 36 LIDTKDNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYN 93
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ TMTL + S N + F + + + + L +
Sbjct: 94 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRLDRTE 153
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A T L Q+ + A
Sbjct: 154 PTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLP 213
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 214 TSWTVGDKTGSGDYGTTNDIAVIWPQGRAPLVLVT 248
>gi|94502859|gb|ABF29660.1| beta-lactamase [Enterobacter cloacae]
Length = 251
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 35/215 (16%), Positives = 58/215 (26%), Gaps = 6/215 (2%)
Query: 33 LLDT-NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+DT + V+ D + S +K+M A V + +K +L P+ I
Sbjct: 30 LIDTKDNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYN 87
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ TMTL + S N + F + + + + L +
Sbjct: 88 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRLDRTE 147
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A T L Q+ + A
Sbjct: 148 PTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLP 207
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 208 TSWTVGDKTGSGDYGTTNDIAVIWPQGRAPLVLVT 242
>gi|94502839|gb|ABF29649.1| beta-lactamase [Enterobacter cloacae]
Length = 256
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 35/215 (16%), Positives = 58/215 (26%), Gaps = 6/215 (2%)
Query: 33 LLDT-NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+DT + V+ D + S +K+M A V + +K +L P+ I
Sbjct: 35 LIDTKDNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYN 92
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ TMTL + S N + F + + + + L +
Sbjct: 93 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFAREIGDETFRLDRTE 152
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A T L Q+ + A
Sbjct: 153 PTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLP 212
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 213 TSWTVGDKTGSGDYGTTNDIAVIWPQGRAPLVLVT 247
>gi|320333000|ref|YP_004169711.1| beta-lactamase [Deinococcus maricopensis DSM 21211]
gi|319754289|gb|ADV66046.1| beta-lactamase [Deinococcus maricopensis DSM 21211]
Length = 335
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
Y + D TG + S+TK MTA + + L
Sbjct: 35 SYGVADLETGR---AMDAATTFPIGSITKTMTATLALQLRDAGQLDLD 79
>gi|281336008|gb|ADA62561.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|228949530|ref|ZP_04111780.1| Beta-lactamase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228810135|gb|EEM56506.1| Beta-lactamase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
Length = 301
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 64 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 120
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 121 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRKMGDRVTMSDRFETE 180
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + + A
Sbjct: 181 LNEAIPGDIRDTSTAKAIARNLKDFTVGNALPHQKRNILTEWMKGNATGDKLIRAGVPTD 240
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 241 WVVADKSGAGSYGTRNDIAIVWPPNRSPIIIAILSSKDEKEATYD 285
>gi|197724711|emb|CAP12357.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 40/261 (15%), Positives = 68/261 (26%), Gaps = 22/261 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNP 53
R L+ + A+ +F E K+ Y +D +G +A +
Sbjct: 5 RLCLISLIAALPLAVFASPQPLEQIKISEGQLAGRVGYVEMDLASGRTLAAWRASERFPL 64
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
S K++ V + + L I + S MT+ I
Sbjct: 65 MSTFKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAIT 124
Query: 114 KSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
S N + + F++ + + L T A T A
Sbjct: 125 MSDNSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAT 184
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
L + T Q+ + + AV KTG
Sbjct: 185 TLRKLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTG------------ 232
Query: 232 AIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 AGERGSRGIVALLGPDGKAER 253
>gi|325929380|ref|ZP_08190510.1| beta-lactamase class A [Xanthomonas perforans 91-118]
gi|325540292|gb|EGD11904.1| beta-lactamase class A [Xanthomonas perforans 91-118]
Length = 266
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 33/203 (16%), Positives = 60/203 (29%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLD+ TG + + D + S K + A V + + K L + I +
Sbjct: 24 LLDSATGKRLGQR-EDERFPMCSTFKFVLAAAVLRRVDQGKLTLAQQVRIHASDMLEHAP 82
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G ++++ + ++ S N A + F++ + +
Sbjct: 83 VTERHVGGSLSVGELCRATMIYSDNPAANLLFPLVGEPAGVTAFLRGIGDAQTRTDRYEP 142
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T A A L + D Q+ I + + A T
Sbjct: 143 QMNRFADDDPRDTTTPAAMAATLRTLLLGDALHPASRKQLTDWMIDNRTGDDCLRAGLTA 202
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 203 GWKIGDKTGSNGTDTRNDIAILW 225
>gi|284040035|ref|YP_003389965.1| beta-lactamase [Spirosoma linguale DSM 74]
gi|283819328|gb|ADB41166.1| beta-lactamase [Spirosoma linguale DSM 74]
Length = 323
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 31/272 (11%), Positives = 78/272 (28%), Gaps = 30/272 (11%)
Query: 2 RQFLVIIAMAMLSNI-FPFLSIAETNKLP----------------YYTLLDTNTGHVIAE 44
R + I +A +S + P + + D TG +
Sbjct: 26 RIIFLTIGLAFVSALWLPVAAQSRPTLAKLRQQIEQELSRHPGTFAVAFKDLKTGKELLI 85
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
++ AS K V+ + K L+ +TI+ + +S +
Sbjct: 86 R-EHEVFHAASTMKTPVMIEVYKQAAQHKLALSDSMTITTDFKSIVDGSSYSLHAEQDSD 144
Query: 105 DNALK------------LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ K ++ ++++A + + + +K++ +
Sbjct: 145 TSIYKAVGTKRTLAALVYDMIIVSSNLATNMVIERVGAQNVTQTMRDLGAKDIQVRRGVE 204
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ + TTA D+ ++ +I + + +K+ +
Sbjct: 205 DSKAFAQGLNNTTTAYDLMVIFEKIARGKAVSPDASKAMITTLLDQKFNDAIPGKLPKDV 264
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KTG + + + + V+L
Sbjct: 265 KVAHKTGSITGVRHDSGIVFLPDGRKYVLVLL 296
>gi|281335908|gb|ADA62511.1| CTX-M-52-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|281335842|gb|ADA62489.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|124244225|gb|ABM92284.1| betalactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 299
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 13 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 71
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 72 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 131
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 132 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 191
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 192 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 251
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 252 TAVVWSEHQAPIIV 265
>gi|281335984|gb|ADA62549.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGDY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|219920919|emb|CAQ76637.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 45.4 bits (105), Expect = 0.013, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L D Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D LI V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPEDHAPLILVT 263
>gi|281335958|gb|ADA62536.1| CTX-M-52-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|113953603|ref|YP_730177.1| carboxylesterase, beta-lactamase family protein [Synechococcus sp.
CC9311]
gi|113880954|gb|ABI45912.1| carboxylesterase, beta-lactamase family protein [Synechococcus sp.
CC9311]
Length = 373
Score = 45.4 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 10/167 (5%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+ + ++ + L + G A+ PD AS K V
Sbjct: 93 LTALSKRWQALAAKDPDLQVSAFMLA-LDDGR-YAQLNPDTALPAASAIKTPILLVAIEE 150
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+ + P+T+SK K T + +++ +++ A +
Sbjct: 151 IDAGRLSWNEPLTLSKTVVGGGAGWMASKPLGTRFPTYEVATEMIRVSDNTATNLL---- 206
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDMAIL 173
+N +LGLSAT N + + T+ARD+A
Sbjct: 207 IERVGGQADLNARFNSLGLSATKVNN--WLPDLKGTNTTSARDLARA 251
>gi|281335978|gb|ADA62546.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 45.4 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|229091492|ref|ZP_04222702.1| Beta-lactamase [Bacillus cereus Rock3-42]
gi|228691866|gb|EEL45613.1| Beta-lactamase [Bacillus cereus Rock3-42]
Length = 312
Score = 45.4 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ + L IT +K
Sbjct: 75 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQ--QNSTMKLDEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 132 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHQIGGPKGYEKALRQMGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPRDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 252 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYD 296
>gi|197724676|emb|CAP12359.2| beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 45.4 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 40/261 (15%), Positives = 68/261 (26%), Gaps = 22/261 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNP 53
R L+ + A+ +F E K+ Y +D +G ++A +
Sbjct: 5 RLCLISLIAALPLAVFASPQPLEQIKISEGQLAGRVGYVEMDLASGRMLAAWRASERFPL 64
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
S K++ V + + L I + S MT+ I
Sbjct: 65 MSTFKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAIT 124
Query: 114 KSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMA 171
S N + F++ + + L T A T A
Sbjct: 125 MSDNTAGNLLLKIVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMAT 184
Query: 172 ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVAS 231
L + T Q+ + + AV KTG
Sbjct: 185 TLRKLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTG------------ 232
Query: 232 AIQGDQSLIAVILGALDRNTR 252
A + I +LG + R
Sbjct: 233 AGERGSRGIVALLGPDGKAER 253
>gi|326778513|ref|ZP_08237778.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces cf. griseus XylebKG-1]
gi|326658846|gb|EGE43692.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces cf. griseus XylebKG-1]
Length = 483
Score = 45.4 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
A A+ + P ++ E +++DT TG + PAS K+ T
Sbjct: 102 AAALRDTLAPLIAAPELGDKVAASVIDTATGKQLYGTGATTAMTPASTIKIATTTAAL 159
>gi|182437877|ref|YP_001825596.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|178466393|dbj|BAG20913.1| putative D-alanyl-D-alanine carboxypeptidase [Streptomyces griseus
subsp. griseus NBRC 13350]
Length = 483
Score = 45.4 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
A A+ + P ++ E +++DT TG + PAS K+ T
Sbjct: 102 AAALRDTLAPLIAAPELGDKVAASVIDTATGKQLYGTGATTAMTPASTIKIATTTAAL 159
>gi|302559299|ref|ZP_07311641.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
Tu4000]
gi|302476917|gb|EFL40010.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces griseoflavus
Tu4000]
Length = 440
Score = 45.4 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTKLMTAYVVFSFL 69
L+ + L ++D TG + P PAS TK+ TA S +
Sbjct: 54 LATVLDPLLKNPALGDRSAAVVDVATGTRLYGTGPGTGKALTPASTTKIATAVAALSAM 112
>gi|255065510|ref|ZP_05317365.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria sicca ATCC 29256]
gi|255050335|gb|EET45799.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria sicca ATCC 29256]
Length = 479
Score = 45.4 bits (105), Expect = 0.014, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLT 57
M+ + + P +I + + ++G+V+ ++ + P NPAS
Sbjct: 10 MKLRQTAALLWLSILSLPAFAIDFGRIPQDEISVYVQELDSGNVLVDHRSNVPVNPASTM 69
Query: 58 KLMTAYVVFSF 68
KL+TA+ F
Sbjct: 70 KLVTAFAAFKA 80
>gi|281335988|gb|ADA62551.1| CTX-M-1 group beta-lactamase [synthetic construct]
Length = 291
Score = 45.0 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|6468749|emb|CAB61643.1| beta-lactamase FONA-5 [Serratia fonticola]
Length = 295
Score = 45.0 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 41/275 (14%), Positives = 72/275 (26%), Gaps = 24/275 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP----------------YYTLLD-TNTGHVIAENY 46
+V M +L P + K L+D + ++
Sbjct: 11 LMVATVMPLLFGSAPLWAQPANAKANIQQQLSELEKNSGGRLGVALIDTADNSQILY--R 68
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
D + S +K+M + + K +L + I ++ + + MTL
Sbjct: 69 GDERFPMCSTSKVMAVSALLKQSETDKNLLAKRMEIKQSDLVNYNPIAEKHLDTGMTLAE 128
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
I S N I E L K K L T + TT
Sbjct: 129 FSAATIQYSDNTAMNKILEHLGGPAKVTEFARTIGDKTFRLDRTEPTLNTAIPGDKRDTT 188
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGFTCAS 224
+ +S + T + + +E G KTG
Sbjct: 189 SPQAMAISLQNLTLGKALAEPQRAQLVEWMKGNTTGGASIRAGLPTTWVVGDKTGSGDYG 248
Query: 225 GFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSAS 258
N +A + L+ V + +N +
Sbjct: 249 TTNDIAVIWPANHAPLVLVT--YFTQPQQNAEARK 281
>gi|197335045|ref|YP_002155230.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio fischeri MJ11]
gi|197316535|gb|ACH65982.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio fischeri MJ11]
Length = 468
Score = 45.0 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLD-TNTGHVIAENYPDHPWNPASLTKLMTAY 63
L +I+ + +++I LS + ++ + + + D PAS K++TA
Sbjct: 11 LSLISFSSIADIKETLSSLPS-GSRAAITVENLQSNKIEFQQKQDELLPPASTLKIVTAL 69
Query: 64 VV 65
V
Sbjct: 70 VA 71
>gi|281335976|gb|ADA62545.1| CTX-M-79-derivative beta-lactamase [synthetic construct]
Length = 291
Score = 45.0 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 20/261 (7%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ S N + + + F + + + + L + + A
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTESTLNTAIPGDPRDT 183
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ L Q+ + A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKTGSGGY 243
Query: 224 SGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 244 GTTNDIAVIWPKDRAPLILVT 264
>gi|289770878|ref|ZP_06530256.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
gi|289701077|gb|EFD68506.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces lividans TK24]
Length = 459
Score = 45.0 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++D TG + D P PAS TK+
Sbjct: 95 RAAAVVDLTTGKRLYGLGSDAPLTPASTTKI 125
>gi|256786985|ref|ZP_05525416.1| hypothetical protein SlivT_21059 [Streptomyces lividans TK24]
Length = 507
Score = 45.0 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++D TG + D P PAS TK+
Sbjct: 143 RAAAVVDLTTGKRLYGLGSDAPLTPASTTKI 173
>gi|21221835|ref|NP_627614.1| hypothetical protein SCO3408 [Streptomyces coelicolor A3(2)]
gi|4808347|emb|CAB42761.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 459
Score = 45.0 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++D TG + D P PAS TK+
Sbjct: 95 RAAAVVDLTTGKRLYGLGSDAPLTPASTTKI 125
>gi|297251585|gb|ADI25069.1| oxacillinase OXA-114e [Achromobacter xylosoxidans]
Length = 275
Score = 45.0 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 21/243 (8%), Positives = 53/243 (21%), Gaps = 11/243 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD----HPWNPASLT 57
R+ + A+ + + + D G ++ + + PAS
Sbjct: 4 RRLSCALGAALSLSALGGGPVQAAVLCT--VVADAADGRILFQQGTQQACAERYTPASTF 61
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KL A + + + + + + + +
Sbjct: 62 KLAIALMGADAGILQGPHEPVWNYQPAYPDWGGDAWRQPTDPARWIKYSVVWYSQLTAMA 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
K+ G +++ + R L R
Sbjct: 122 LGQDRFQRYTSAFGYGNADVSGEPGKHNGTDGAWIISSLRISPLEQLAFLR---KLVNRQ 178
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + + G++G+ T V A + +
Sbjct: 179 LPVKAAAYELAENLFEVGQADGWRLYGKTGTGSPGSNGVYTAANAYGW--FVGWARKDGR 236
Query: 238 SLI 240
L+
Sbjct: 237 QLV 239
>gi|6468746|emb|CAB61641.1| beta-lactamase FONA-4 [Serratia fonticola]
Length = 295
Score = 45.0 bits (104), Expect = 0.015, Method: Composition-based stats.
Identities = 39/280 (13%), Positives = 76/280 (27%), Gaps = 26/280 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT------------------LLD-TNTGHV 41
+R+ +++A M A+T L+D + +
Sbjct: 6 LRKTTLMVATVMPLLFGSAPLWAQTANAKANIQQQLSELEKSSGGRLGVALIDTADNSQI 65
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M + + K +L + I ++ + +
Sbjct: 66 LY--RGDERFPMCSTSKVMAVSALLKQSETDKNLLAKRMEIKQSDLVNYNPIAEKHLDTG 123
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MTL I S N I E L K +F + + + + L + A
Sbjct: 124 MTLAEFSAATIQYSDNTAMNKILEHLGGPAKVTEFARTIGDKTFRLDRTEPTLNTAIPGD 183
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ + L Q+ + A G KTG
Sbjct: 184 ERDTSSPLAMAKSLQNLTLGKALGEPQRAQLVEWMKGNTTGGASIRAGLPTTWIVGDKTG 243
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSAS 258
N +A + L+ V + +N +
Sbjct: 244 SGDYGTTNDIAVIWPANHAPLVLVT--YFTQPQQNAEARK 281
>gi|219920983|emb|CAQ76669.1| beta-lactamase [Klebsiella oxytoca]
Length = 269
Score = 45.0 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 38/258 (14%), Positives = 70/258 (27%), Gaps = 18/258 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP------------YYTLLD-TNTGHVIAENYPD 48
R+ ++ A+ +L + + L++ + ++ D
Sbjct: 7 RKIAMLAAVPLLLASGALWASTDAIHQKLTDLEKRSGGRLGVALINTADNSQILY--RGD 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M A V + K ++ + I+ + S MTL
Sbjct: 65 ERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITEKHLQSGMTLAELS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F + + + + L + A + T
Sbjct: 125 AATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLNTAIPGDERDTSTP 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L D Q+ + A KTG
Sbjct: 185 LAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWVVXDKTGAGDYGTT 244
Query: 227 NIVASAIQGDQ-SLIAVI 243
N +A D L+ V
Sbjct: 245 NXIAVIWPEDHAPLVLVT 262
>gi|40950501|gb|AAR97884.1| AmpC [Aliivibrio fischeri]
Length = 283
Score = 45.0 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 30/252 (11%), Positives = 67/252 (26%), Gaps = 11/252 (4%)
Query: 1 MRQFLVIIAMAMLSN-----IFPFLSIAETNKLPYYT---LLDTNTGHVIAENYPDHPWN 52
M+ + + +L+N A Y +L+T T E D +
Sbjct: 1 MKIKPFLFGLIVLANNAIAGSLTQNIEAIELSSGGYIGVSVLNTETNKT-WEYKGDQRFP 59
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
S K + + +I+K + +T A + +
Sbjct: 60 MMSTFKTLACAKMLYDSSVGGIDKYKTTSITKEQIIPWSPVTEPLVDHMITTKKACEATM 119
Query: 113 VKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ S N A + + +F++ + + L A + T
Sbjct: 120 LMSDNTAANIVLNEIGGPSSLTQFLRAIGDDKTRLDRIEPELNEAKNGDKRDTTTPVAMS 179
Query: 171 AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA 230
L+ + + +K + K ++ + ++G I A
Sbjct: 180 QTLNALLFGNTLNPQDEQTLKSWMMNNKVSDPLLRSILPNNWSIADRSGAGGFGSRGITA 239
Query: 231 SAIQGDQSLIAV 242
+ I +
Sbjct: 240 AVWNDKHQPIII 251
>gi|55845897|gb|AAV66985.1| Imi3 [Enterobacter cloacae]
gi|74229922|gb|ABA00479.1| clavulanic-acid inhibited carbapenemase IMI-2 [Enterobacter
asburiae]
Length = 292
Score = 45.0 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 33/265 (12%), Positives = 67/265 (25%), Gaps = 17/265 (6%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP-----------YYTLLDTNTGHVIAENYPDHPW 51
+ ++ + ++S F + + LDT +G + +
Sbjct: 9 RIAILFSSCLVSISFFSQANTKGIDEIKNLETDFNGRIGVYALDTGSGKS-FSYKANERF 67
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
S K A V ++ + L + + + E+ +T K + M+L +
Sbjct: 68 PLCSSFKGFLAAAVLKGSQDNQLNLNQIVNYNTRSLEFYSPITTKYKDNGMSLGDMAAAA 127
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMN---NTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N I E + + M + L A + T A
Sbjct: 128 LQYSDNGATNIILERYIGGPEGMTKFMRSIGDKDFRLDRWELDLNTAIPGDERDTSTPAA 187
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF--TCASGF 226
L + + A G KTG +
Sbjct: 188 VAKSLKTLALGNILNEREKETYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCGAYGTAN 247
Query: 227 NIVASAIQGDQSLIAVILGALDRNT 251
+ + LI + +
Sbjct: 248 DYAVVWPKNRAPLIISVYTTKNEKE 272
>gi|313509545|gb|ADR66026.1| beta-lactamase CTX-M-15 [Escherichia coli]
Length = 262
Score = 45.0 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 70/258 (27%), Gaps = 27/258 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ + S N + + + L T +
Sbjct: 124 ELIAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ 237
N +A D+
Sbjct: 240 SGGYGTTNDIAVIWPKDR 257
>gi|154486834|ref|ZP_02028241.1| hypothetical protein BIFADO_00666 [Bifidobacterium adolescentis
L2-32]
gi|154084697|gb|EDN83742.1| hypothetical protein BIFADO_00666 [Bifidobacterium adolescentis
L2-32]
Length = 503
Score = 45.0 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
F + A + + +G+V+AEN D P PAS K +TAY L
Sbjct: 110 AFRASAAGFGGEFSIAIADASGNVVAENNIDVPRTPASTMKTLTAYAAAVELDMG 164
>gi|119025425|ref|YP_909270.1| hypothetical protein BAD_0407 [Bifidobacterium adolescentis ATCC
15703]
gi|118765009|dbj|BAF39188.1| hypothetical secreted protein with D-Ala-D-Ala carboxypeptidase 3
(S13) domain [Bifidobacterium adolescentis ATCC 15703]
Length = 503
Score = 45.0 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
F + A + + +G+V+AEN D P PAS K +TAY L
Sbjct: 110 AFRASAAGFGGEFSIAIADASGNVVAENNIDVPRTPASTMKTLTAYAAAVELDMG 164
>gi|6468752|emb|CAB61645.1| beta-lactamase FONA-6 [Serratia fonticola]
Length = 295
Score = 45.0 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 40/280 (14%), Positives = 76/280 (27%), Gaps = 26/280 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT------------------LLD-TNTGHV 41
+RQ +++A M A+T L+D + +
Sbjct: 6 LRQTTLMVATVMPLLFGSAPLWAQTANAKANIQQQLSELEKSSGGRLGVALIDTADNSQI 65
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M + + K +L + I ++ + +
Sbjct: 66 LY--RADERFPMCSTSKVMAVSALLKQSETDKNLLAKRMEIKQSDLVNYNPIAEKHLDTG 123
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MTL I S N I E L K +F + + + + L + A
Sbjct: 124 MTLAEFSAATIQYSDNTAMNKILEHLGGPAKVTEFARTIGDKTFRLDRTEPTLNTAIPGD 183
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ + L Q+ + A G KTG
Sbjct: 184 KRDTTSPLAMAKSLQNLTLGKALGEPQRAQLVEWMKGNTTGGASIRAGLPTTWVVGDKTG 243
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSAS 258
N +A + L+ V + +N +
Sbjct: 244 SGDYGTTNDIAVIWPANHAPLVLVT--YFTQPQQNAEARK 281
>gi|584847|sp|P37322|BLC3_PSEAE RecName: Full=Beta-lactamase CARB-3; AltName: Full=Carbenicillinase
3; Flags: Precursor
Length = 288
Score = 45.0 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 121 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 181 IASTLNKLLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 240
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 241 TAVVWSEHQAPIIV 254
>gi|455609|gb|AAB19684.1| beta-lactamase [Klebsiella oxytoca, strain D488, Peptide Partial,
263 aa]
gi|228284|prf||1802283A beta lactamase
Length = 263
Score = 45.0 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 36/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 28 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 85
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 86 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 145
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ +
Sbjct: 146 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRVGLPESWV 205
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A +R +A +++ G
Sbjct: 206 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 263
>gi|6468737|emb|CAB61635.1| class A beta-lactamase FONA-1 [Serratia fonticola]
Length = 295
Score = 45.0 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 39/280 (13%), Positives = 76/280 (27%), Gaps = 26/280 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT------------------LLD-TNTGHV 41
+R+ +++A M A+T L+D + +
Sbjct: 6 LRKTTLMVATVMPLLFGSAPLWAQTANAKANIQQQLSELEKSSGGRLGVALIDTADNSQI 65
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M + + K +L + I ++ + +
Sbjct: 66 LY--RGDERFPMCSTSKVMAVSALLKQSETDKNLLAKRMEIKQSDLVNYNPIAEKHLDTG 123
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MTL I S N I E L K +F + + + + L + A
Sbjct: 124 MTLAEFSAATIQYSDNTAMNKILEHLGGPAKVTEFARTIGDKTFRLDRTEPTLNTAIPGD 183
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ + L Q+ + A G KTG
Sbjct: 184 ERDTSSPLAMAKSLQNLTLGKALGEPQRAQLVEWMKGNTTGGASIRAGLPTTWIVGDKTG 243
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSAS 258
N +A + L+ V + +N +
Sbjct: 244 SGDYGTTNDIAVIWPANHAPLVLVT--YFTQPQQNAEARK 281
>gi|151528|gb|AAA25979.1| carbenicillinase [Pseudomonas aeruginosa]
Length = 304
Score = 45.0 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 18 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 76
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 77 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 136
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 137 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 197 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 256
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 257 TAVVWSEHQAPIIV 270
>gi|224760695|gb|ACN62388.1| beta-lactamase OXY-2-9 [Klebsiella oxytoca]
Length = 290
Score = 45.0 bits (104), Expect = 0.016, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDETFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L D Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A +R +A +++ G
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 290
>gi|208612657|gb|ACI29757.1| beta-lactamase PSE-1 [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 310
Score = 45.0 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 23 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 81
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 82 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 141
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 142 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 201
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 202 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 261
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 262 TAVVWSEHQAPIIV 275
>gi|160369828|gb|ABX38721.1| oxacillinase OXA-114a [Achromobacter xylosoxidans]
Length = 275
Score = 45.0 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 26/255 (10%), Positives = 60/255 (23%), Gaps = 11/255 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD----HPWNPASLT 57
R+ + A+ + + + D G ++ + + PAS
Sbjct: 4 RRLSCALGAALSLSALGGGPVQAAVLCT--VVADAADGRILFQQGTQQACAERYTPASTF 61
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KL A + + + + + + + +
Sbjct: 62 KLAIALMGADAGILQGPHEPVWNYQPAYPDWGGDAWRQPTDPARWIKYSVVWYSQLTAKA 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
K+ G +++ + R + +
Sbjct: 122 LGQDRFQRYTSAFGYGNADVSGEPGKHNGTDGAWIISSLRISPLEQLAFLRKLVNRQLPV 181
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
K + G + Y G++G+ T V A + +
Sbjct: 182 KAAAYELAENLFEAGQADGWRLYG---KTGTGSPGSNGVYTAANAYGW--FVGWARKDGR 236
Query: 238 SLIAVILGALDRNTR 252
L+ L +R TR
Sbjct: 237 QLVYARLLQDERATR 251
>gi|482594|pir||A49789 beta-lactamase (EC 3.5.2.6) PSE-1 - Pseudomonas aeruginosa plasmid
RPL11 transposon Tn1403
gi|9719057|gb|AAF97621.1|AF221899_2 beta lactamase [Vibrio cholerae]
gi|151075|gb|AAA25740.1| beta-lactamase [Pseudomonas aeruginosa]
gi|38488680|dbj|BAD02330.1| B-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|47717641|gb|AAT37847.1| beta-lactamase [Vibrio cholerae]
gi|47717661|gb|AAT37859.1| beta-lactamase [Vibrio cholerae]
gi|74422686|gb|ABA06533.1| beta-lactamase [Pseudomonas aeruginosa]
gi|82400290|gb|ABB72864.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Albany]
gi|133902727|gb|ABO42030.1| PSE-1/CARB-2 beta-lactamase [Acinetobacter genomosp. 13TU]
gi|157674383|gb|ABV60286.1| beta-lactamase PSE-1 [Proteus mirabilis]
gi|169138736|gb|ACA48667.1| beta-lactamase PSE-1 [Morganella morganii]
gi|295002675|gb|ADF59108.1| beta-lactamase [Pseudomonas aeruginosa]
gi|295311787|gb|ADF97244.1| PSE-1/CARB-2 beta-lactamase [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|300391745|gb|ADK11242.1| beta-lactamase [Pseudomonas aeruginosa]
gi|312183500|gb|ADQ42319.1| PSE-1/CARB-2 beta-lactamase [Salmonella enterica subsp. enterica
serovar Paratyphi B]
Length = 304
Score = 45.0 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 18 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 76
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 77 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 136
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 137 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 197 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 256
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 257 TAVVWSEHQAPIIV 270
>gi|227511610|ref|ZP_03941659.1| possible beta-lactamase class A [Lactobacillus buchneri ATCC 11577]
gi|227085104|gb|EEI20416.1| possible beta-lactamase class A [Lactobacillus buchneri ATCC 11577]
Length = 326
Score = 45.0 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 31/252 (12%), Positives = 71/252 (28%), Gaps = 24/252 (9%)
Query: 26 NKLPYYTLLDTNTGHV------IAENYP----DHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ ++G + + AS+ K+ F +K +
Sbjct: 72 LTAESQCVA-ASSGKTSIYVSELDSKNSVVENNRVQRSASVIKIFIMIEAFRQIKAGQLT 130
Query: 76 LTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
L + I + + +++ L+L+I S N + + L +
Sbjct: 131 LNQQVIIPADDRVGGTGELANQNTHQLSVKQLLRLMIRNSDNTATNVLIDKL-----GGL 185
Query: 136 QHMNNTSKNLGLSATHFMNAHGVV------QHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+N LG S T + + T+ D+ + Y
Sbjct: 186 AVINAEINRLGCSHTKL-RRKMLDYRALQNGKDNVTSVSDLGKTLMALSGHRLLGHPYDS 244
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQS-LIAVILGALD 248
++ + A+ + KTG G A+ ++ + + V+L
Sbjct: 245 EMLQLLRYNSNQSKLSALISRKAVIYNKTGEFPDYGVQNDAAIVKKGKRAFVVVVLSENG 304
Query: 249 RNTRNKVSASLL 260
+ + +L
Sbjct: 305 TQQKQINAMQML 316
>gi|226359711|ref|YP_002777489.1| class A beta-lactamase [Rhodococcus opacus B4]
gi|226238196|dbj|BAH48544.1| class A beta-lactamase [Rhodococcus opacus B4]
Length = 317
Score = 45.0 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 55/214 (25%), Gaps = 4/214 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D TG V + D + S K + V +++ L + I
Sbjct: 74 VDPQTGAV-YSHRGDERFAMCSTFKAYASAAVLRKIEDGSTSLDKTVMIEPADLVENSPV 132
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATH 151
+ G+ MTL + + +S N + + + + + + S L T
Sbjct: 133 TAAAVGTPMTLGQIAEAALTQSDNTAGNYLLREIGGPQAITALARDVGDASTRLDRWETE 192
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T + D Q+ K A
Sbjct: 193 LNTAFRGDPRDTTTPTGLAHGFRALLLGDALDAASRGQLLDWMRASKTSDKRMRAGLPPG 252
Query: 212 GADGMKTGFTCASGFNIVASAIQ-GDQSLIAVIL 244
KTG N A ++ +L
Sbjct: 253 WTAADKTGGGGFGTANDAGVAWSPDGSPIVLAVL 286
>gi|328553242|gb|AEB23734.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
TA208]
gi|328911973|gb|AEB63569.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
LL3]
Length = 491
Score = 45.0 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
A + TG V+ + D PASL KL+TA
Sbjct: 49 ALKGAAAGVSVRSA-----KTGEVLFASGEDMRLRPASLMKLLTASAAL 92
>gi|219920959|emb|CAQ76657.1| beta-lactamase [Klebsiella oxytoca]
Length = 270
Score = 45.0 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWXKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 263
>gi|219920969|emb|CAQ76662.1| beta-lactamase [Klebsiella oxytoca]
Length = 244
Score = 45.0 bits (104), Expect = 0.017, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 64/233 (27%), Gaps = 17/233 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP------------YYTLLD-TNTGHVIAENYPD 48
R+ ++ A+ +L + + L++ + ++ D
Sbjct: 7 RKIAMLAAVPLLLASGALWASTDAIHQKLTDXEKRSGGRLGVALINTADNSQILY--RGD 64
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M A V + K ++ + I+ + S MTL
Sbjct: 65 ERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITEKHLQSGMTLAELS 124
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F + + + + L + A + T
Sbjct: 125 AATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLNTAIPGDERDTSTP 184
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
L D Q+ + A G KTG
Sbjct: 185 LAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWVVGDKTG 237
>gi|1705480|sp|P52663|BLAN_ENTCL RecName: Full=Imipenem-hydrolyzing beta-lactamase; AltName:
Full=Carbapenemase; AltName: Full=NMC-A; Flags:
Precursor
gi|396088|emb|CAA79967.1| beta-lactamase [Enterobacter cloacae]
gi|27650896|emb|CAD60091.1| class A nonmetallocarbapenamase [Enterobacter cloacae]
Length = 292
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 33/265 (12%), Positives = 67/265 (25%), Gaps = 17/265 (6%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP-----------YYTLLDTNTGHVIAENYPDHPW 51
+ ++ + ++S F + + LDT +G + +
Sbjct: 9 RIAILFSSCLISISFFSQANTKGIDEIKNLETDFNGRIGVYALDTGSGKS-FSYRANERF 67
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
S K A V ++ + L + + + E+ +T K + M+L +
Sbjct: 68 PLCSSFKGFLAAAVLKGSQDNRLNLNQIVNYNTRSLEFHSPITTKYKDNGMSLGDMAAAA 127
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMN---NTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N I E + + M + L A + T A
Sbjct: 128 LQYSDNGATNIILERYIGGPEGMTKFMRSIGDEDFRLDRWELDLNTAIPGDERDTSTPAA 187
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF--TCASGF 226
L + + A G KTG +
Sbjct: 188 VAKSLKTLALGNILSEHEKETYQTWLKGNTTGAARIRASVPSDWVVGDKTGSCGAYGTAN 247
Query: 227 NIVASAIQGDQSLIAVILGALDRNT 251
+ + LI + +
Sbjct: 248 DYAVVWPKNRAPLIISVYTTKNEKE 272
>gi|218778756|ref|YP_002430074.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Desulfatibacillum
alkenivorans AK-01]
gi|218760140|gb|ACL02606.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Desulfatibacillum
alkenivorans AK-01]
Length = 417
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 19/49 (38%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
SIA L + + G ++ P+ PAS K+ T+ +
Sbjct: 48 PQSIARLLGPKDSLLAENSKGEILYSYNPNALRTPASTFKVFTSLLALK 96
>gi|46277642|gb|AAS87023.1| beta-lactamase PLA-4 [Raoultella planticola]
Length = 291
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 38/232 (16%), Positives = 72/232 (31%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G ++A D + S K++ V S + + L I +
Sbjct: 45 LDLASGQLLAGYRSDERFPMMSTFKVLLCGAVLSRVDAGEEQLDRRIHYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ +T+ I S N A + +L + F++H + + L T
Sbjct: 105 TEKHLTDGLTVGELCAAAITLSDNTAANLLLTTLGGPQGLTSFLRHSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ ++ K +V
Sbjct: 165 LNEARPGDVRDTTTPQAMARTLRNLLTGRVLSSASQQQLQRWMVEDKVAGPLLRSVLPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL-GALDR-NTRNKVSASL 259
KTG I+A+ + ++ + L G + RNK A++
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGKAARIVVIYLTGTPAAMDERNKQIAAI 276
>gi|332674665|gb|AEE71481.1| putative carboxypeptidase [Propionibacterium acnes 266]
Length = 476
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 90 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 146
Query: 68 FLKEKK 73
Sbjct: 147 CTDAGH 152
>gi|315106295|gb|EFT78271.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL030PA1]
Length = 457
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|315082138|gb|EFT54114.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL078PA1]
Length = 457
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|314985466|gb|EFT29558.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL005PA1]
Length = 457
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|314926570|gb|EFS90401.1| conserved domain protein [Propionibacterium acnes HL036PA3]
Length = 233
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|313817470|gb|EFS55184.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL046PA2]
Length = 457
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|313814561|gb|EFS52275.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL025PA1]
Length = 457
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|313793178|gb|EFS41245.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL110PA1]
Length = 457
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|289428837|ref|ZP_06430517.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes J165]
gi|289157838|gb|EFD06061.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes J165]
gi|313802734|gb|EFS43952.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL110PA2]
gi|313806391|gb|EFS44898.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL087PA2]
gi|313821994|gb|EFS59708.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL036PA1]
gi|313824110|gb|EFS61824.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL036PA2]
gi|313826477|gb|EFS64191.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL063PA1]
gi|314961365|gb|EFT05466.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL002PA2]
gi|314964590|gb|EFT08690.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL082PA1]
gi|314980292|gb|EFT24386.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL072PA2]
gi|314987376|gb|EFT31467.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL005PA2]
gi|314989083|gb|EFT33174.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL005PA3]
gi|315078393|gb|EFT50424.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL053PA2]
gi|315082717|gb|EFT54693.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL027PA2]
gi|315086076|gb|EFT58052.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL002PA3]
gi|315087662|gb|EFT59638.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL072PA1]
gi|327333315|gb|EGE75035.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL096PA3]
gi|327445207|gb|EGE91861.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL013PA2]
gi|327457125|gb|EGF03780.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL092PA1]
gi|328758407|gb|EGF72023.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL020PA1]
Length = 457
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|289424629|ref|ZP_06426412.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes SK187]
gi|289155326|gb|EFD04008.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes SK187]
Length = 457
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|282853312|ref|ZP_06262649.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes J139]
gi|282582765|gb|EFB88145.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes J139]
Length = 457
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|295129826|ref|YP_003580489.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes SK137]
gi|291376318|gb|ADE00173.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes SK137]
gi|313772801|gb|EFS38767.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL074PA1]
gi|313810941|gb|EFS48655.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL083PA1]
gi|313831706|gb|EFS69420.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL007PA1]
gi|313834412|gb|EFS72126.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL056PA1]
gi|313840397|gb|EFS78111.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL086PA1]
gi|314974754|gb|EFT18849.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL053PA1]
gi|314977048|gb|EFT21143.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL045PA1]
gi|315097301|gb|EFT69277.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL038PA1]
gi|327331329|gb|EGE73068.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL096PA2]
gi|327447290|gb|EGE93944.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL043PA1]
gi|327450263|gb|EGE96917.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL043PA2]
gi|328761142|gb|EGF74686.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL099PA1]
Length = 457
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|134096832|ref|YP_001102493.1| lipoprotein [Saccharopolyspora erythraea NRRL 2338]
gi|133909455|emb|CAL99567.1| possible lipoprotein [Saccharopolyspora erythraea NRRL 2338]
Length = 302
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP--------YYTLLDTNTGHVIAENYPDHPWNP 53
++ + +A A S + + P YT++D +G ++ +
Sbjct: 5 KRAVTGLAAATASLVIAATPALSAPQAPQVDPGITLGYTVVDARSGETTLQSNEHEQFRS 64
Query: 54 ASLTKLMTAYVVFSFLKEK 72
AS+ KL+ A L+
Sbjct: 65 ASVVKLLIALDYLEGLEPG 83
>gi|50841747|ref|YP_054974.1| putative carboxypeptidase [Propionibacterium acnes KPA171202]
gi|50839349|gb|AAT82016.1| putative carboxypeptidase [Propionibacterium acnes KPA171202]
Length = 476
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 90 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAIALLD 146
Query: 68 FLKEKK 73
Sbjct: 147 CTDAGH 152
>gi|94502867|gb|ABF29664.1| beta-lactamase [Enterobacter cloacae]
Length = 231
Score = 45.0 bits (104), Expect = 0.018, Method: Composition-based stats.
Identities = 31/208 (14%), Positives = 54/208 (25%), Gaps = 12/208 (5%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 28 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 85
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 86 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 145
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 146 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 201
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ 237
G KTG N +A D+
Sbjct: 202 ASWVVGDKTGSGDYGTTNDIAVIWPKDR 229
>gi|308173831|ref|YP_003920536.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
DSM 7]
gi|307606695|emb|CBI43066.1| D-alanyl-D-alanine carboxypeptidase [Bacillus amyloliquefaciens
DSM 7]
Length = 491
Score = 45.0 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 22/87 (25%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT----------------------LLDTNTG 39
++ +I + +++ + A+ + + TG
Sbjct: 6 KRLSAVILLLIIAAVPYIDDSAKAAEQKNALQKELQQILNEEPALKGAAAGVSVQSAKTG 65
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVF 66
V+ + D PASL KL+TA
Sbjct: 66 EVLFASGEDMRLRPASLMKLLTASAAL 92
>gi|58580993|ref|YP_200009.1| beta lactamase [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58425587|gb|AAW74624.1| beta lactamase [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 313
Score = 45.0 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 36/228 (15%), Positives = 66/228 (28%), Gaps = 6/228 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLD+ TG + + D + S K + A V + + K L + I +
Sbjct: 55 LLDSATGWRLGQR-EDERFPMCSTFKFVLAAAVLQRVDQGKLTLAQRVKIRASDMLEHAP 113
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G ++++ + ++ S N A + F++ + +
Sbjct: 114 VTERHVGGSLSVGELCRATMIYSDNPAANVLFPLVGDSAGLTGFLRGIGDAQTRSDRYEP 173
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T A A L + D Q Q+ I + + A T
Sbjct: 174 EMNRFAAGDPRDTTTPAAMAATLRTLLLGDALQPSSRKQLTDWMIDNRTGDDCLRAGLTR 233
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQS---LIAVILGALDRNTRNKV 255
G KTG N +A L+ L + +
Sbjct: 234 EWKIGDKTGSNGTDTRNDIAILWPPKGRAPLLLTTYLNGAKVDDAARD 281
>gi|84622918|ref|YP_450290.1| beta lactamase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|84366858|dbj|BAE68016.1| beta lactamase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 313
Score = 45.0 bits (104), Expect = 0.019, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 67/228 (29%), Gaps = 6/228 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLD+ TG + + D + S K + A V + + K L + I +
Sbjct: 55 LLDSATGWRLGQR-EDERFPMCSTFKFVLAAAVLQRVDQGKLTLAQRVKIRASDMLEHAP 113
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G ++++ + ++ S N A A+ F++ + +
Sbjct: 114 VTERHVGGSLSVGELCRATMIYSDNPAANALFLLVGDSAGLTGFLRGIGDAQTRSDRYEP 173
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T A A L + D Q Q+ I + + A T
Sbjct: 174 EMNRFAAGDPRDTTTPAAMAATLRTLLLGDALQPSSRKQLTDWMIDNRTGDDCLRAGLTR 233
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQS---LIAVILGALDRNTRNKV 255
G KTG N +A L+ L + +
Sbjct: 234 EWKIGDKTGSNGTDTRNDIAILWPPKGRAPLLLTTYLNGAKVDDAARD 281
>gi|300790560|ref|YP_003770851.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
U32]
gi|299800074|gb|ADJ50449.1| D-alanyl-D-alanine carboxypeptidase [Amycolatopsis mediterranei
U32]
Length = 812
Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++D TG V+ ++ P PAS TK++T+
Sbjct: 441 VIDPVTGTVLWDHGSSTPVTPASTTKVLTSAAAL 474
>gi|153006763|ref|YP_001381088.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Anaeromyxobacter sp. Fw109-5]
gi|152030336|gb|ABS28104.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Anaeromyxobacter sp. Fw109-5]
Length = 758
Score = 44.6 bits (103), Expect = 0.019, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D +G V+ D NPAS KL+T+
Sbjct: 78 GVVVADVASGEVLYARDADVLLNPASNVKLVTSAAAL 114
>gi|157956220|gb|ABW06479.1| extended-spectrum beta-lactamase CTX-M-15 [Escherichia coli]
Length = 235
Score = 44.6 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 31/208 (14%), Positives = 54/208 (25%), Gaps = 12/208 (5%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 32 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 89
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 90 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 149
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 150 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 205
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ 237
G KTG N +A D+
Sbjct: 206 ASWVVGDKTGSGGYGTTNDIAVIWPKDR 233
>gi|313888977|ref|ZP_07822636.1| conserved hypothetical protein [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312844963|gb|EFR32365.1| conserved hypothetical protein [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 262
Score = 44.6 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 29/216 (13%), Positives = 60/216 (27%), Gaps = 12/216 (5%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
D + G D AS+ KL+ F + K L I++
Sbjct: 27 YDLDLGEG-FSINGDQQVPSASMIKLLILLKAFDECDKGKLNLEDTISLDDYERVDGSGI 85
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ L L++ +++ A I L + +N GL T
Sbjct: 86 LKELYRNHKFSIRELLTLMIIVSDNTATNILIDLL-----GREEINKIGHEFGLEKTILQ 140
Query: 154 NAHG-----VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
++T++ ++ L I Y ++ + ++ +
Sbjct: 141 RKMMDSLAKEKGLDNFTSSNEILKLLKMIYEKNFVNEDYSELALDILLRQQERDRLQRYL 200
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
K+G + ++ I V+L
Sbjct: 201 PEDLKIANKSGDLDNLENDGGIFFTTN-KNYILVVL 235
>gi|120608890|ref|YP_968568.1| beta-lactamase [Acidovorax citrulli AAC00-1]
gi|120587354|gb|ABM30794.1| beta-lactamase [Acidovorax citrulli AAC00-1]
Length = 327
Score = 44.6 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 42/112 (37%), Gaps = 2/112 (1%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNS 94
+ G D W AS KL A V +++ + L + + ++ + +
Sbjct: 19 LDNGET-FAWQADRRWYLASSAKLPLAIAVLQEVQQGRLRLDQELRVEERDKIDGSGALV 77
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
G+ +++ L+ +++ S N A + ++ ++N+G
Sbjct: 78 WQPVGTQHSVETLLRRMLMDSDNTAANLLIRTIGPDTFNTRARALMGARNVG 129
>gi|94502861|gb|ABF29661.1| beta-lactamase [Enterobacter cloacae]
Length = 230
Score = 44.6 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 31/208 (14%), Positives = 54/208 (25%), Gaps = 12/208 (5%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 28 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 85
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 86 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 145
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 146 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 201
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ 237
G KTG N +A D+
Sbjct: 202 ASWVVGDKTGSGDYGTTNDIAVIWPKDR 229
>gi|94502857|gb|ABF29659.1| beta-lactamase [Enterobacter cloacae]
gi|94502871|gb|ABF29666.1| beta-lactamase [Enterobacter cloacae]
Length = 228
Score = 44.6 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 31/208 (14%), Positives = 54/208 (25%), Gaps = 12/208 (5%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 27 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 84
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 85 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 144
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 145 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 200
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ 237
G KTG N +A D+
Sbjct: 201 ASWVVGDKTGSGDYGTTNDIAVIWPKDR 228
>gi|126471119|dbj|BAF48064.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 294
Score = 44.6 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 61/203 (30%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G I + D + S K M A V S + A+L + + +
Sbjct: 54 LLDTASGRRI-SHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAP 112
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +T
Sbjct: 113 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEP 172
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + + Q Q+ I + A
Sbjct: 173 ELNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGK 232
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 233 RWRVGDKTGSNGEDARNDIAVLW 255
>gi|325282281|ref|YP_004254822.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Deinococcus proteolyticus MRP]
gi|324314090|gb|ADY25205.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Deinococcus proteolyticus MRP]
Length = 459
Score = 44.6 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ D TG V P PAS TKL+TA V L +T +T+
Sbjct: 80 LVQDLVTGEVRESLNSRAPMIPASTTKLVTAAAVLGELNGMDGWWSTELTVPAAEW 135
>gi|148975586|ref|ZP_01812457.1| beta-lactamase [Vibrionales bacterium SWAT-3]
gi|145965014|gb|EDK30265.1| beta-lactamase [Vibrionales bacterium SWAT-3]
Length = 287
Score = 44.6 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 33/261 (12%), Positives = 81/261 (31%), Gaps = 19/261 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY-------------YTLLDTNTGHVIAENYP 47
M+++ +A+ +LS F S++++ K + D+ T
Sbjct: 1 MKKY-TSLALVLLSAFFSTSSLSQSLKPESIEQIESRVSARIGVAVYDSATKQT-WSYKG 58
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D + S K + + + K L + ++I + ++L +A
Sbjct: 59 DERFPMMSTFKTLACANLLYDAENKGLDLDSKVSIKSRDLIVWSPVTKELVDKGISLRDA 118
Query: 108 LKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ S N + + +F++ + +++ +A T
Sbjct: 119 CSATMTMSDNTAVNIVLGGIGGPNALTQFLRSIGDSNTRFDHLEPELNHARPGDARDTTT 178
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
+ L+ + +D +KG + K ++ ++G
Sbjct: 179 PNSIVMTLNELMYSDTLSQASKATLKGWMMGNKVSDGMFRSILPSGWNIADRSGAGAYGS 238
Query: 226 FNIVASAIQGDQS--LIAVIL 244
I A ++ +I+V L
Sbjct: 239 RAITAIVWSEHRAPLIISVAL 259
>gi|6468740|emb|CAB61637.1| class A beta-lactamase FONA-2 [Serratia fonticola]
Length = 295
Score = 44.6 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 39/280 (13%), Positives = 75/280 (26%), Gaps = 26/280 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT------------------LLD-TNTGHV 41
+R+ +++A M A+T L+D + +
Sbjct: 6 LRKTTLMVATVMPLLFSSAPLWAQTANAKANIQQQLSELEKNSGGRLGVALIDTADNSQI 65
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M + + K +L + I ++ + +
Sbjct: 66 LY--RGDERFPMCSTSKVMAVSALLKQSETDKNLLAKRMEIKQSDLVNYNPIAEKHLDTG 123
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MTL I S N I E L K +F + + + + L + A
Sbjct: 124 MTLAEFSAATIQYSDNTAMNKILEHLGGPAKVTEFARTIGDKTFRLDRTEPTLNTAIPGD 183
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ L Q+ + A G KTG
Sbjct: 184 PRDTSSPLAMAKSLQNLTLGKALGEPQRAQLVEWMKGNTTGGASIRAGLPTTWIVGDKTG 243
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSAS 258
N +A + L+ V + +N +
Sbjct: 244 SGDYGTTNDIAVIWPANHAPLVLVT--YFTQPQQNAEARK 281
>gi|326315035|ref|YP_004232707.1| beta-lactamase [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323371871|gb|ADX44140.1| beta-lactamase [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 364
Score = 44.6 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 2/112 (1%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNS 94
+ G D W AS KL A V +++ L + + ++ + +
Sbjct: 52 LDNGET-FAWEADRRWYLASSAKLPLAIAVLQEVQQGHLRLDQELRVEERDKIDGSGALV 110
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
G+ +++ L+ +++ S N A + ++ ++N+G
Sbjct: 111 WQPVGTQHSVETLLRRMLMDSDNTAANLLIRTIGLDTFNTRAQALMGARNVG 162
>gi|260459851|ref|ZP_05808105.1| Beta-lactamase [Mesorhizobium opportunistum WSM2075]
gi|259034653|gb|EEW35910.1| Beta-lactamase [Mesorhizobium opportunistum WSM2075]
Length = 231
Score = 44.6 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 25/237 (10%), Positives = 55/237 (23%), Gaps = 27/237 (11%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYP-DHPWNPASLTKLMTAYV 64
++ +A L A + + D +G + ++ D ++PAS K+ + +
Sbjct: 14 ILFLLAWLLGFPMRAQSAPLGDVQCTLIADAASGKTLYQDGICDQRFSPASTFKVPLSLI 73
Query: 65 VFSFLKEKKAMLTTP--ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ T +
Sbjct: 74 GYDA---GILSGEHTPAWDYKPEFKAVKRDQKTVDPVIWERDSIIWYSREI--------- 121
Query: 123 IAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
T + + LG + G ++ ++ + DF
Sbjct: 122 -------TRRLGNEKFAGYVSKLGYGNSDVSGNPGKDDSLTHSWVNSSLKITPVEQVDFL 174
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ + Q+ KTG T + A + +SL
Sbjct: 175 RKLLARQLPVSAKAYDMTSAIIPTFQAGGWTVQGKTGSTR-----LGGDADKDKRSL 226
>gi|84468550|dbj|BAE71359.1| beta-lactamase [Vibrio cholerae non-O1/non-O139]
gi|84468554|dbj|BAE71361.1| beta-lactamase [Vibrio cholerae non-O1/non-O139]
gi|240282411|gb|ACS54273.1| beta-lactamase PSE1 [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 329
Score = 44.6 bits (103), Expect = 0.020, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 43 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 101
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 102 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 161
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 162 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 221
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 222 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 281
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 282 TAVVWSEHQAPIIV 295
>gi|126149275|dbj|BAF47410.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 294
Score = 44.6 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 61/203 (30%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G I + D + S K M A V S + A+L + + +
Sbjct: 53 LLDTASGRRI-SHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAP 111
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +T
Sbjct: 112 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEP 171
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + + Q Q+ I + A
Sbjct: 172 ELNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGK 231
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 232 RWRVGDKTGSNGEDARNDIAVLW 254
>gi|328956441|ref|YP_004373827.1| putative beta-lactamase (class A) precursor [Carnobacterium sp.
17-4]
gi|328672765|gb|AEB28811.1| putative beta-lactamase (class A) precursor [Carnobacterium sp.
17-4]
Length = 263
Score = 44.6 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 3/109 (2%)
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKK 98
++ + + AS+ KL + + K L + +SK
Sbjct: 29 QLLFSKNKEELFPSASIIKLPIYLYYYEQAIQGKLNLMDRVNVSKKGRANGSGVMHVLTS 88
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+++ L+L+I S N+ + + M + N G+
Sbjct: 89 IEDWSIEELLQLMIAVSDNEATNQLISYAGL--ENLQVWMKEKTWNEGV 135
>gi|229819194|ref|YP_002880720.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Beutenbergia cavernae DSM 12333]
gi|229565107|gb|ACQ78958.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Beutenbergia cavernae DSM 12333]
Length = 464
Score = 44.6 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
P + D TG V+ + PAS KL+TA
Sbjct: 90 SPPGVVVADVATGEVLVSADAETGRAPASTLKLLTA 125
>gi|229017842|ref|ZP_04174725.1| Beta-lactamase [Bacillus cereus AH1273]
gi|229024043|ref|ZP_04180518.1| Beta-lactamase [Bacillus cereus AH1272]
gi|228737256|gb|EEL87776.1| Beta-lactamase [Bacillus cereus AH1272]
gi|228743433|gb|EEL93550.1| Beta-lactamase [Bacillus cereus AH1273]
Length = 348
Score = 44.6 bits (103), Expect = 0.021, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ L IT +K
Sbjct: 111 IDTGTNRTIAYR-PNERFAYASTYKALAAGVLLQQNSID--KLNEVITYTKEDLVEYSPI 167
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++ M +
Sbjct: 168 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRQMGDRVTMADRFEPE 227
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 228 LNEATPGDIRDTSTAKAIATNLKAFTVGNALPAHKRNILTEWMKGNATGDKLIRAGVPTD 287
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 288 WIVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 332
>gi|65318837|ref|ZP_00391796.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Bacillus anthracis
str. A2012]
Length = 129
Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 10/81 (12%), Positives = 20/81 (24%)
Query: 248 DRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
++ +L GF K + + E +
Sbjct: 2 SASSDWDDHMNLFDKGFDRFEQTKVLGQGALAEITEKKYANHVYTKNSFSVPLTEEEKKS 61
Query: 308 TQMKEAKDKESHFIDFEKITL 328
+K DK + +D K+
Sbjct: 62 VVLKVELDKSAKLVDGVKVGK 82
>gi|308097803|gb|ADO14462.1| oxacillinase OXA-114f [Achromobacter xylosoxidans]
Length = 275
Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 25/255 (9%), Positives = 58/255 (22%), Gaps = 11/255 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD----HPWNPASLT 57
R+ + A+ + + + D G ++ + + PAS
Sbjct: 4 RRLSCALGAALSLSALGGGPVQAAVLCT--VVADAADGRILFQQGTQQACAERYTPASTF 61
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KL A + + + + + + + +
Sbjct: 62 KLAIALMGADAGILQGPHEPVWNYQPAYPDWGGDAWRQPTDPARWIKYSVVWYSQLTAKA 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
K+ G +++ + R L R
Sbjct: 122 LGQDRFQRYTSAFGYGNADVSGEPGKHNGTDGAWIISSLRISPLEQLAFLR---KLVNRQ 178
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + + G++G+ T V A + +
Sbjct: 179 LPVKAAAYELAENLFEVGQADGWRLYGKTGTGSPGSNGVYTAANAYGW--FVGWARKDGR 236
Query: 238 SLIAVILGALDRNTR 252
L+ L +R TR
Sbjct: 237 QLVYARLLQDERATR 251
>gi|158522236|ref|YP_001530106.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Desulfococcus
oleovorans Hxd3]
gi|158511062|gb|ABW68029.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Desulfococcus
oleovorans Hxd3]
Length = 435
Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNK-----LPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
++ AM + + F + + G V+ PD PAS+ K+
Sbjct: 30 VLATAMVLCTVAFAPAFAERPLSQLLEPGDSVLVQRMDDGRVVLAENPDTLLVPASILKI 89
Query: 60 MTAYVVFS 67
+T+ F
Sbjct: 90 VTSLAAFE 97
>gi|295837285|ref|ZP_06824218.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces sp. SPB74]
gi|295826451|gb|EFG64864.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces sp. SPB74]
Length = 457
Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
A+ + P L + K P +++D +G + + PAS+TK+ TA L
Sbjct: 19 ALAGRLDPLLGVHALGKGPAASVVDLTSGEQVYGDRATASATPASVTKIATAVAALDALG 78
Query: 71 EKK 73
Sbjct: 79 PGH 81
>gi|260913959|ref|ZP_05920433.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Pasteurella dagmatis ATCC 43325]
gi|260632046|gb|EEX50223.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Pasteurella dagmatis ATCC 43325]
Length = 489
Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIA--------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+ +A+ L + F + S+ + +IAE+ + PAS
Sbjct: 19 LVTKLALFCLFSPFAYTSVDVSSLNQVLPDGTSSSVIAKNLTRNEIIAEHQANTFMLPAS 78
Query: 56 LTKLMTAYVV 65
K++TA
Sbjct: 79 TQKVLTALTA 88
>gi|78048849|ref|YP_365024.1| beta-lactamase precursor [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78037279|emb|CAJ25024.1| beta-lactamase precursor [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 297
Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 33/203 (16%), Positives = 60/203 (29%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLD+ TG + + D + S K + A V + + K L + I +
Sbjct: 55 LLDSATGKRLGQR-EDERFPMCSTFKFVLAAAVLRRVDQGKLTLAQQVRIRASDMLEHAP 113
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G ++++ + ++ S N A + F++ + +
Sbjct: 114 VTERHVGGSLSVGELCRATMIYSDNPAANLLFPLVGEPAGVTAFLRGIGDAQTRTDRYEP 173
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T A A L + D Q+ I + + A T
Sbjct: 174 QMNRFADDDPRDTTTPAAMAATLRTLLLGDALHPASRKQLTDWMIDNRTGDDCLRAGLTA 233
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 234 GWKIGDKTGSNGTDTRNDIAILW 256
>gi|115017|sp|P10424|BLA1_BACCE RecName: Full=Beta-lactamase 1; AltName: Full=Beta-lactamase I;
AltName: Full=Penicillinase; Flags: Precursor
gi|551722|gb|AAA22668.1| beta-lactamase I precursor (ttg start codon) [Bacillus cereus]
Length = 306
Score = 44.6 bits (103), Expect = 0.022, Method: Composition-based stats.
Identities = 38/225 (16%), Positives = 61/225 (27%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 69 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 125
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 126 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRKMGDRVTMSDRFETE 185
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + + A
Sbjct: 186 LNEAIPGDIRDTSTAKAIARNLKDFTVGNALPHQKRNILTEWMKGNATGDKLIRAGVPTD 245
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
D K+G N +A ++ +I IL + D
Sbjct: 246 WVDADKSGAGSYGTRNDIAIVWPPNRSPIIIAILSSKDEKEATYD 290
>gi|117920430|ref|YP_869622.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella sp. ANA-3]
gi|117612762|gb|ABK48216.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella sp. ANA-3]
Length = 513
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE---TNKLPY-----------YTLL-DTNTGHVIAEN 45
++ L+ ++ML + +I + L D +T ++
Sbjct: 19 IKGLLLGSLVSMLLSTQAHAAIHPMDESILAKQIADIAPRHSQVALLARDLSTNTLLYSQ 78
Query: 46 YPDHPWNPASLTKLMTAYVVF 66
D + PAS K++TA
Sbjct: 79 QADTLFIPASTQKVLTAVTAL 99
>gi|149920699|ref|ZP_01909164.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Plesiocystis pacifica SIR-1]
gi|149818486|gb|EDM77935.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Plesiocystis pacifica SIR-1]
Length = 543
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++D +G V+ D NPAS KL+T
Sbjct: 115 VVDLASGEVLYAREADRALNPASNAKLVTTAAAL 148
>gi|37955063|gb|AAP22374.1| carbenicillin-hydrolyzing beta-lactamase [Vibrio cholerae
non-O1/non-O139]
Length = 288
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 36/256 (14%), Positives = 76/256 (29%), Gaps = 16/256 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI-----------AETNKLP-YYTLLDTNTGHVIAENYPD 48
M+ L + A+ M S +F S + +LDT G + D
Sbjct: 1 MKSLL-VFALLMPSVVFASSSKFQSVEQEIKGIESSLSARIGVAILDTQNGES-WDYNGD 58
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K + + + K L + + + K + G +TL +A
Sbjct: 59 QRFPLTSTFKTIACAKLLYDAEHGKVNLNSTVEVKKADLVTYSPVLEKQVGKPITLSDAC 118
Query: 109 KLLIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + K+ F++ + + L T
Sbjct: 119 FATMTTSDNTAANIVINAVGDPKSITDFLRQIGDKETRLDRVEPELNEGKLGDLRDTTTP 178
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
+ L+ + +++ + + N +V + ++G
Sbjct: 179 NAITSTLNQLLFGSTLSEASQKKLESWMVNNQVTGNLLRSVLPVTWSIADRSGAGGFGAR 238
Query: 227 NIVASAIQGDQSLIAV 242
+I A ++ I V
Sbjct: 239 SITAIVWSEEKKPIIV 254
>gi|262163954|ref|ZP_06031693.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
gi|262027482|gb|EEY46148.1| D-alanyl-D-alanine carboxypeptidase [Vibrio mimicus VM223]
Length = 481
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK-----LPYYTLL-DTNTGHVIAENYPDHPWNPAS 55
R FL+ + +S+++ + Y ++ DT + E + PAS
Sbjct: 8 RWFLLFFGLLCVSSVYAESLVNSAINKLPAGSRYALMVEDTVSKQTTLELNTHLYYPPAS 67
Query: 56 LTKLMTAYVV 65
K++TA
Sbjct: 68 TQKILTALAA 77
>gi|222096077|ref|YP_002530134.1| beta-lactamase [Bacillus cereus Q1]
gi|221240135|gb|ACM12845.1| beta-lactamase [Bacillus cereus Q1]
Length = 265
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 28 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 84
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 85 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRKMGDRVTMSDRFETE 144
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + + A
Sbjct: 145 LNEAIPGDIRDTSTAKAIARNLKDFTVGNALPHQKRNILTEWMKGNATGDKLIRAGVPTD 204
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 205 WVVADKSGAGSYGTRNDIAIVWPPNRSPIIIAILSSKDEKEATYD 249
>gi|311745239|ref|ZP_07719024.1| putative beta-lactamase [Algoriphagus sp. PR1]
gi|126577765|gb|EAZ81985.1| putative beta-lactamase [Algoriphagus sp. PR1]
Length = 301
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 36/211 (17%), Positives = 68/211 (32%), Gaps = 14/211 (6%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI-TISKNASEYPPSNSTFKKGSTMTLD 105
D ++ AS K+ +F +E K L I +++ S S+ + G
Sbjct: 63 ADEEFHAASTMKVPVMIELFKQEEEGKLNLDDSILLVNEFKSIVDGSSYSMDIGDDSDDI 122
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKF------VQHMNNTSKNLGLSATHFMNAHGVV 159
K+ S ND+ + + + T ++LG + +
Sbjct: 123 IYNKIGTKVSLNDLMYNMITVSSNLATNVLIELVDAKKVTATMRDLGAAKIEVLRGVEDQ 182
Query: 160 QHG-----HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214
+ + TTARD+ + I + Q +K +K+ N G
Sbjct: 183 KAYDLGLSNSTTARDLLEIMEAIALNEAGTQEDCQEMISILKDQKF-NEIIPFHLPEGVS 241
Query: 215 -GMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KTG + + +S + V+L
Sbjct: 242 VAHKTGSITGVHHDAGIVYLPDGRSYVLVLL 272
>gi|285019199|ref|YP_003376910.1| beta-lactamase class a protein [Xanthomonas albilineans GPE PC73]
gi|283474417|emb|CBA16918.1| putative beta-lactamase class a protein [Xanthomonas albilineans]
Length = 296
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 37/232 (15%), Positives = 67/232 (28%), Gaps = 8/232 (3%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
LLD+ TG I + S K + V + + L + +
Sbjct: 53 YLLDSGTGQRI-GRREQERFPLCSTFKFVLVVAVLQRVDRGEIGLDQQVRVRAADVVSYA 111
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL--SA 149
+ G T+++D + ++ S A + L + +
Sbjct: 112 PVTKPHVGGTLSVDALCRAAMIFSDGGAANLLLR-LVGDPPGLTRFLRAHGDTQTRSDRN 170
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWR-IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
MNA + TT MA + D Q ++ I + + A
Sbjct: 171 EPSMNAFALDDPRDTTTPAAMASTMRTLLLGDVLQPASRQRLIDWMIDNRTGDDCLRAGL 230
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQS---LIAVILGALDRNTRNKVSA 257
G KTG N +A +S L+ L ++ + +A
Sbjct: 231 PAGWRIGDKTGNNGTDSRNDIAIVWPPGRSAPLLLTAYLNMATVDSDARDAA 282
>gi|6225087|sp|Q45726|BLAC_BACTU RecName: Full=Beta-lactamase; AltName: Full=Penicillinase; Flags:
Precursor
gi|603515|emb|CAA58448.1| beta-lactamase [Bacillus thuringiensis]
Length = 309
Score = 44.6 bits (103), Expect = 0.023, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 72 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--TLNEVITFTKEDLVDYSPV 128
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++ M + T
Sbjct: 129 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRKMGDRVTMSDRFETE 188
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T R L + + A
Sbjct: 189 LNEAIPGDIRDTSTAKRIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 248
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D +
Sbjct: 249 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEASYD 293
>gi|34559244|gb|AAQ75378.1| beta-lactamase OXY-2 [Klebsiella oxytoca]
gi|48473855|emb|CAG34106.1| class A beta-lactamase [Klebsiella oxytoca]
Length = 290
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L D Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A D L+ V A +R +A +++ G
Sbjct: 233 VGDKTGSGDYGTTNDIAVIWPEDHAPLVLVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 290
>gi|28572595|ref|NP_789375.1| carboxypeptidase [Tropheryma whipplei TW08/27]
gi|28410727|emb|CAD67113.1| putative carboxypeptidase [Tropheryma whipplei TW08/27]
Length = 313
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 39/222 (17%), Positives = 79/222 (35%), Gaps = 15/222 (6%)
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN--- 106
AS++K++ A ++ + + L I+ + + ++ K G +
Sbjct: 81 KHPIASISKVILALMLIE--RYSLSELNDGPNITYDTEDVSFFRNSVKDGDSYAPVYAGL 138
Query: 107 --ALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
LK ++ A A SL K + + GL T A G+
Sbjct: 139 TLTLKQSLIPLMLPSANNYATSLVKHLYGKSYPKFAREWLDKNGLYNTDIYEASGLDD-R 197
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+ +T ++ +L+ + ++ + NTN A+G G DG+KTG +
Sbjct: 198 NVSTTDNLIVLAKKAYSNPVLRGIMRLKEASIPNIGLVRNTNKALGIN-GIDGIKTGSSP 256
Query: 223 ASGFNIVASA---IQGD-QSLIAVILGALDRNTRNKVSASLL 260
A+ N++ +A + + V + +LL
Sbjct: 257 AAKSNLLFTAAIKTKNGLIRIYGVFKTEKSYASLYGKLDTLL 298
>gi|217959991|ref|YP_002338547.1| beta-lactamase Bla1 [Bacillus cereus AH187]
gi|217064014|gb|ACJ78264.1| beta-lactamase Bla1 [Bacillus cereus AH187]
Length = 276
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 39 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 95
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 96 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRKMGDRVTMSDRFETE 155
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + + A
Sbjct: 156 LNEAIPGDIRDTSTAKAIARNLKDFTVGNALPHQKRNILTEWMKGNATGDKLIRAGVPTD 215
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 216 WVVADKSGAGSYGTRNDIAIVWPPNRSPIIIAILSSKDEKEATYD 260
>gi|282878441|ref|ZP_06287227.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella buccalis ATCC 35310]
gi|281299427|gb|EFA91810.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella buccalis ATCC 35310]
Length = 420
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D VI + PAS K++TA
Sbjct: 79 MVYDLTADSVIYAHNERQLMRPASTMKVVTAITALDK 115
>gi|206973745|ref|ZP_03234663.1| beta-lactamase Bla1 [Bacillus cereus H3081.97]
gi|206747901|gb|EDZ59290.1| beta-lactamase Bla1 [Bacillus cereus H3081.97]
Length = 306
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 69 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 125
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 126 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRKMGDRVTMSDRFETE 185
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + + A
Sbjct: 186 LNEAIPGDIRDTSTAKAIARNLKDFTVGNALPHQKRNILTEWMKGNATGDKLIRAGVPTD 245
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 246 WVVADKSGAGSYGTRNDIAIVWPPNRSPIIIAILSSKDEKEATYD 290
>gi|221229304|gb|ABO61006.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 303
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 44/260 (16%), Positives = 72/260 (27%), Gaps = 29/260 (11%)
Query: 2 RQFL----VIIAMAMLSNIFPFLSIAETNKLP--YYT--------------------LLD 35
R+FL +A + + + T P LLD
Sbjct: 5 RRFLQFSGAAVASSFALPLLARAAGKATANAPTDAAITAASDFAALEKACAGRLGVTLLD 64
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
T +G I + D + S K M A V S + A+L + + + +
Sbjct: 65 TASGRRI-GHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAPVTR 123
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
G MT+ + + I+ S N A + F++ +T
Sbjct: 124 RHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEPELN 183
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+ T A A L + + Q Q+ I + A
Sbjct: 184 SFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGKRWR 243
Query: 214 DGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 244 VGDKTGSNGEDARNDIAVLW 263
>gi|254468683|ref|ZP_05082089.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase [beta
proteobacterium KB13]
gi|207087493|gb|EDZ64776.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase [beta
proteobacterium KB13]
Length = 460
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--YYTLLDTNTGHVIAENYPDHPWNPASLTK 58
M +F +II+ + + L+I Y++ + +TG D +N AS+ K
Sbjct: 1 MIRFFLIISFFVTTAYSQELAIKNKINPQDFAYSIKNISTGES-WSKDADKSFNFASVNK 59
Query: 59 LMTAYVVFSF 68
L+TA +
Sbjct: 60 LVTATIALDE 69
>gi|221067385|ref|ZP_03543490.1| Beta-lactamase [Comamonas testosteroni KF-1]
gi|220712408|gb|EED67776.1| Beta-lactamase [Comamonas testosteroni KF-1]
Length = 301
Score = 44.6 bits (103), Expect = 0.024, Method: Composition-based stats.
Identities = 29/206 (14%), Positives = 59/206 (28%), Gaps = 5/206 (2%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
++DT +G A D + S K + A V + + L + S
Sbjct: 55 YVVDTVSGAE-AGWRGDERFPMCSTFKTLLAARVLYLAQRGEIRLWRKLYYSPAEVVAWS 113
Query: 92 SNSTFK--KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
S + MT+ + ++V S N A + E+ ++++ M + + L
Sbjct: 114 PISEKRAGANGGMTVQELCEAMVVVSDNTAANVMLEASGGPAALTQWLREMGDGTTRLDR 173
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+ A + T + L + D + ++ + +
Sbjct: 174 NEPSLNTALPGDERDTTTPRAMVQSLQKLLLGDVLEGYARALLQQWLADSRTGDKRVRSG 233
Query: 208 GTFLGADGMKTGFTCASGFNIVASAI 233
G KTG
Sbjct: 234 MPGDWKVGGKTGSGERGTACDTLIVW 259
>gi|32329439|emb|CAD58780.1| oxacillinase [Pseudomonas aeruginosa]
gi|164511893|emb|CAO91943.1| oxacillinase Oxa45 [Pseudomonas aeruginosa]
Length = 264
Score = 44.2 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 29/259 (11%), Positives = 65/259 (25%), Gaps = 28/259 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYP-DHPWNPASLTKL 59
MR +I A LS +F + A+ + + D +G + D + P S K+
Sbjct: 1 MRGKHTVILGAALSALFAGAAGAQMLECT--LVADAASGQELYRKGACDKAFAPMSTFKV 58
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
A + + N + + + +
Sbjct: 59 PLAVMGYDAG-----------------ILVDAHNPRWDYKPEFNGYKFQQKTTDPTIWEK 101
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+ S T K + G G ++ +S +
Sbjct: 102 DSIVWYSQQLTRKMGQKRFAAYVAGFGYGNGDISGEPGKSNGLTHSWLGSSLKISPEGQV 161
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN--------IVAS 231
F + + ++ + + + A KTG +
Sbjct: 162 RFVRDLLSAKLPASKDAQQMTVSILPHFAAGDWAVQGKTGTGSFIDARGAKAPLGWFIGW 221
Query: 232 AIQGDQSLIAVILGALDRN 250
A ++ ++ + A +
Sbjct: 222 ATHEERRVVFARMTAGGKK 240
>gi|84497545|ref|ZP_00996367.1| putative carboxypeptidase [Janibacter sp. HTCC2649]
gi|84382433|gb|EAP98315.1| putative carboxypeptidase [Janibacter sp. HTCC2649]
Length = 465
Score = 44.2 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+++ TG ++ P PAS KL+TA+V
Sbjct: 114 VVEVATGRILWAKNPTVARVPASNEKLVTAFVAL 147
>gi|196033876|ref|ZP_03101287.1| beta-lactamase Bla1 [Bacillus cereus W]
gi|195993556|gb|EDX57513.1| beta-lactamase Bla1 [Bacillus cereus W]
Length = 306
Score = 44.2 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 69 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 125
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 126 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRKMGDRVTMSDRFETE 185
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + + A
Sbjct: 186 LNEAIPGDIRDTSTAKAIAKNLKDFTVGNALPHQKRNILTEWMKGNATGDKLIRAGVPTD 245
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 246 WVVADKSGAGSYGTRNDIAIVWPPNRSPIIIAILSSKDEKEATYD 290
>gi|311746322|ref|ZP_07720107.1| hypothetical protein ALPR1_07920 [Algoriphagus sp. PR1]
gi|126576558|gb|EAZ80836.1| hypothetical protein ALPR1_07920 [Algoriphagus sp. PR1]
Length = 435
Score = 44.2 bits (102), Expect = 0.025, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK------LPYYTLLDTNTGHVIAENYPDHPWNPA 54
M++ LV + + + S ++ + N + LLD + V+ + D + PA
Sbjct: 1 MKKLLVGLLILVSSCTVQKINKSLKNSDVLSQGHMGFMLLDPESDKVLVDINSDKYFIPA 60
Query: 55 SLTKLMTAYV 64
S TKL T Y
Sbjct: 61 SNTKLFTFYT 70
>gi|119384064|ref|YP_915120.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Paracoccus
denitrificans PD1222]
gi|119384318|ref|YP_915374.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Paracoccus
denitrificans PD1222]
gi|119373831|gb|ABL69424.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Paracoccus
denitrificans PD1222]
gi|119374085|gb|ABL69678.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Paracoccus
denitrificans PD1222]
Length = 484
Score = 44.2 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++D +G V+AE P+ PAS K +TA
Sbjct: 55 VIDPASGQVLAERQPEPSMAPASTLKAVTALYALD 89
>gi|6977955|emb|CAB75347.1| L2 b-lactamase [Stenotrophomonas maltophilia]
Length = 303
Score = 44.2 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 37/261 (14%), Positives = 66/261 (25%), Gaps = 30/261 (11%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT---------------------------LL 34
R+FL A+ S++F + +L
Sbjct: 5 RRFLQFSGAAVASSLFAPALVQP-VSASSGIPAANAAIAGAADFAALEKASGGRLGVTVL 63
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
+T G I + D + S K M V S + L T + I+ +
Sbjct: 64 NTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAGKDLLSYAPVA 123
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHF 152
G +T+ + + + S N A + F++ ++ +
Sbjct: 124 RRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSITRNDRNEPDV 183
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ A L+ + Q Q I + A
Sbjct: 184 NLFAKGDPRDTTSPAAMATSLARFAVGNGLQPASRRQFADWLIDNQTGDACLRAGLGKRW 243
Query: 213 ADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 244 RVGDKTGSNGDDTRNDIAVLW 264
>gi|313575239|emb|CBI71182.1| beta-lactamase class A [uncultured bacterium]
Length = 345
Score = 44.2 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 16/102 (15%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYY---------------TLLDTNTGHVIAENYPDH 49
+ +A+ +L A P +LD T
Sbjct: 11 VAAVAVGLLFPACAAPVGATATTAPVAELDSVPQVSSGRLGVAILDFQTSKT-YHINGKD 69
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ S+ K M+A VV + E K L I + +
Sbjct: 70 RFPMQSVFKAMSAVVVMREVDEGKLTLDQEIPVGPDDISVYW 111
>gi|7243960|gb|AAB19430.2| carbenicillinase-3 beta-lactamase [Pseudomonas aeruginosa]
Length = 304
Score = 44.2 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 18 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 76
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 77 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 136
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 137 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 197 IASTLNKLLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 256
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 257 TAVVWSEHQAPIIV 270
>gi|1705474|sp|P23954|BLO2_KLEOX RecName: Full=Beta-lactamase OXY-2; AltName: Full=Penicillinase;
Flags: Precursor
gi|1226010|emb|CAA88908.1| beta-lactamase [Klebsiella oxytoca]
Length = 290
Score = 44.2 bits (102), Expect = 0.026, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L D Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A D L+ V A +R +A +++ G
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPEDHAPLVLVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 290
>gi|291007334|ref|ZP_06565307.1| beta-lactamase class A-like protein [Saccharopolyspora erythraea
NRRL 2338]
Length = 272
Score = 44.2 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 10/219 (4%)
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100
V+ +PAS K++ ++ L T +
Sbjct: 49 VLFG--ARRVVHPASTIKVLVMLTALREVQRGGLALDTEVRFPDERVGGAGVLKDLPGLR 106
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG--V 158
+ L +A+ L+I S N A+ E++ + + + LG T
Sbjct: 107 CLELADAITLMISISDNTATNAVIEAV------GFEAVGELAAELGCEGTQVQRLLMRVQ 160
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
+ T A D A + + Q + ++ + A+ KT
Sbjct: 161 DPGRNTTCALDQARILDSLARGTVLPPRLTQHALWVLSRQQVRDRLPALLPEGARCWNKT 220
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
G S ++ + +L + R +
Sbjct: 221 GEIDGSRHDVALIGDHERPRAVVAVLVDELADHRAGAAR 259
>gi|282880370|ref|ZP_06289081.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella timonensis CRIS 5C-B1]
gi|281305726|gb|EFA97775.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella timonensis CRIS 5C-B1]
Length = 420
Score = 44.2 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D V+ + PAS KL+TA
Sbjct: 80 VYDLTADSVLYKYNERQHLRPASTMKLITAITALDQ 115
>gi|134100412|ref|YP_001106073.1| beta-lactamase class A-like protein [Saccharopolyspora erythraea
NRRL 2338]
gi|133913035|emb|CAM03148.1| beta-lactamase class A-like protein [Saccharopolyspora erythraea
NRRL 2338]
Length = 252
Score = 44.2 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 10/219 (4%)
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100
V+ +PAS K++ ++ L T +
Sbjct: 29 VLFG--ARRVVHPASTIKVLVMLTALREVQRGGLALDTEVRFPDERVGGAGVLKDLPGLR 86
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG--V 158
+ L +A+ L+I S N A+ E++ + + + LG T
Sbjct: 87 CLELADAITLMISISDNTATNAVIEAV------GFEAVGELAAELGCEGTQVQRLLMRVQ 140
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
+ T A D A + + Q + ++ + A+ KT
Sbjct: 141 DPGRNTTCALDQARILDSLARGTVLPPRLTQHALWVLSRQQVRDRLPALLPEGARCWNKT 200
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
G S ++ + +L + R +
Sbjct: 201 GEIDGSRHDVALIGDHERPRAVVAVLVDELADHRAGAAR 239
>gi|5410529|gb|AAD43097.1|AF153200_1 beta-lactamase Pse-1 [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 332
Score = 44.2 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 78/254 (30%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 46 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 104
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 105 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 164
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 165 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 224
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ + + + + N +V ++G +I
Sbjct: 225 IASTLNKFLFGSALSEMNQKKKESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 284
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 285 TAVVWSEHQAPIIV 298
>gi|289663341|ref|ZP_06484922.1| beta lactamase [Xanthomonas campestris pv. vasculorum NCPPB702]
Length = 297
Score = 44.2 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 65/228 (28%), Gaps = 6/228 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLD+ TG + + D + S K + A V + + K ML + I +
Sbjct: 55 LLDSATGWHLGQRQ-DERFPMCSTFKFVLAAAVLQRVDQGKLMLAQRVKIRASDMLEYDP 113
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G ++++ + ++ S N A + F++ + +
Sbjct: 114 VTERHIGGSLSVGELCRATMIYSDNPAANLLFPLVGDPAGVTAFLRSIGDAQTCSDRHEP 173
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T A L + D + Q+ I + + A T
Sbjct: 174 DMNRFAAGDPRDTTTPAAMANTLRTLLLGDALRPASRKQLTDWMIDNRTGDDCLRAGLTR 233
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQS---LIAVILGALDRNTRNKV 255
G KTG N +A L+ L +
Sbjct: 234 DWKIGDKTGSNGIDTRNDIAILWPPKGRAPLLLTAYLNGAKVADAARD 281
>gi|115378030|ref|ZP_01465210.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Stigmatella
aurantiaca DW4/3-1]
gi|310818895|ref|YP_003951253.1| d-alanyl-d-alanine carboxypeptidase/
d-alanyl-d-alanine-endopeptidase [Stigmatella
aurantiaca DW4/3-1]
gi|115364969|gb|EAU64024.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Stigmatella
aurantiaca DW4/3-1]
gi|309391967|gb|ADO69426.1| D-alanyl-D-alanine carboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Stigmatella
aurantiaca DW4/3-1]
Length = 745
Score = 44.2 bits (102), Expect = 0.027, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 22/87 (25%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL-----PYYTL-----------------LDTNTG 39
+ L A+ +L+ + + + L + + G
Sbjct: 7 KSILAAAAVFILALPSAYAASPADKRAEREALKAALLDVIQTTPLKTSRVGIHMVSVDDG 66
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVF 66
V+ D NPAS KL+TA
Sbjct: 67 SVVFSQNADELLNPASNVKLVTAAAAL 93
>gi|1401342|gb|AAB03414.1| carbapenem-hydrolyzing beta-lactamase [Serratia marcescens]
Length = 294
Score = 44.2 bits (102), Expect = 0.028, Method: Composition-based stats.
Identities = 38/260 (14%), Positives = 67/260 (25%), Gaps = 19/260 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-------------YYTLLDTNTGHVIAENYPD 48
+ + ++ + + F + +DT +G+ D
Sbjct: 8 KTASFLFSVCLALSAFNAHANKSDAAAKQIKKLEEDFDGRIGVFAIDTGSGNT-FGYRSD 66
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K A V +++KK + + EY +T KGS MTL +
Sbjct: 67 ERFPLCSSFKGFLAAAVLERVQQKKLDINQKVKYESRDLEYHSPITTKYKGSGMTLGDMA 126
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN---LGLSATHFMNAHGVVQHGHYT 165
+ S N I E + + M + N L A + T
Sbjct: 127 SAALQYSDNGATNIIMERFLGGPEGMTKFMRSIGDNEFRLDRWELELNTAIPGDKRDTST 186
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF--TCA 223
L+ + + A G KTG
Sbjct: 187 PKAVANSLNKLALGNVLNAKVKAIYQNWLKGNTTGDARIRASVPADWVVGDKTGSCGAYG 246
Query: 224 SGFNIVASAIQGDQSLIAVI 243
+ + + LI I
Sbjct: 247 TANDYAVIWPKNRAPLIVSI 266
>gi|256374311|ref|YP_003097971.1| beta-lactamase [Actinosynnema mirum DSM 43827]
gi|255918614|gb|ACU34125.1| beta-lactamase [Actinosynnema mirum DSM 43827]
Length = 271
Score = 44.2 bits (102), Expect = 0.028, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ D G V+ + P AS+TKL+T+Y V ++E P
Sbjct: 11 PVDSAAVAAVSSD---GRVLGSHGDLERRYPLASVTKLLTSYAVLVAVEEGAVEWDDP 65
>gi|228915093|ref|ZP_04078690.1| Beta-lactamase [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228844522|gb|EEM89576.1| Beta-lactamase [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
Length = 312
Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ + L IT +K
Sbjct: 75 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQ--QNSTMKLDEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N + K +K ++ M + T
Sbjct: 132 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFNKIGGPKGYEKALRQMGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTKWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 252 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYD 296
>gi|32130555|gb|AAL78278.2| K1 beta-lactamase [Klebsiella oxytoca]
Length = 290
Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L D Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A D L+ V A +R +A +++ G
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPEDHAPLVLVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 290
>gi|6468743|emb|CAB61639.1| beta-lactamase FONA-3 [Serratia fonticola]
Length = 295
Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 38/280 (13%), Positives = 75/280 (26%), Gaps = 26/280 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT------------------LLD-TNTGHV 41
+R+ +++ M A+T L+D + +
Sbjct: 6 LRKTTLMVTTVMPLLFGSAPLWAQTANAKANIQQQLSELEKNSGGRLGVALIDTADNSQI 65
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M + + K +L + I ++ + +
Sbjct: 66 LY--RGDERFPMCSTSKVMAVSALLKQSETDKNLLAKRMEIKQSDLVNYNPIAEKHLDTG 123
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MTL I S N I E L K +F + + + + L + A
Sbjct: 124 MTLAEFSAATIQYSDNTAMNKILEHLGGPAKVTEFARTIGDKTFRLDRTEPTLNTAIPGD 183
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ + L Q+ + A G KTG
Sbjct: 184 KRDTTSPLAMAKSLQNLTLGKALGEPQRAQLVEWMKGNTTGGASIRAGLPTTWVVGDKTG 243
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSAS 258
N +A + L+ V + +N +
Sbjct: 244 SGDYGTTNDIAVIWPANHAPLVLVT--YFTQPQQNAEARK 281
>gi|65319793|ref|ZP_00392752.1| COG2367: Beta-lactamase class A [Bacillus anthracis str. A2012]
Length = 296
Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 59 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 115
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 116 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRQMGDRVTMSDRFETE 175
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 176 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTKWMKGNATGDKLIRAGVPTN 235
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 236 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYD 280
>gi|299141567|ref|ZP_07034703.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella oris C735]
gi|298576903|gb|EFI48773.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella oris C735]
Length = 420
Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 28/257 (10%), Positives = 58/257 (22%), Gaps = 24/257 (9%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ D + I PAS KL+TA L T K +
Sbjct: 78 MVYDLDADSTIFAFNEHQLMRPASTMKLVTAITAIDRLGGDYQFKTELCYTGKIENNKLV 137
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ G + V++ + V E ++ + +
Sbjct: 138 GDIYCVGGFDPRFNTDDLNAFVEAIRKMGVDTIEGH-LYADLSMKDTKQYGEGWCWDDKN 196
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--------KGLEIKGKKYPNT 203
+ + AR + L + + I
Sbjct: 197 PVLTPLLFSGKDIFMARFLDALVAHGIYVDANIDEKRKPADAFCIVNRFHTIDQILMRML 256
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA------ 257
+ + A + + + SA ++ L+ I G + +
Sbjct: 257 KESNNLYAEAMYYQIAASTGNHPASARSARAVERRLVDKI-GLDASRYKFADGSGLSLYN 315
Query: 258 --------SLLSMGFYN 266
+L + N
Sbjct: 316 YVSAELEVKMLRYAYKN 332
>gi|84687931|ref|ZP_01015797.1| possible penicillin binding protein [Maritimibacter alkaliphilus
HTCC2654]
gi|84664068|gb|EAQ10566.1| possible penicillin binding protein [Rhodobacterales bacterium
HTCC2654]
Length = 490
Score = 44.2 bits (102), Expect = 0.029, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D TG ++ + PAS+ K +TA F
Sbjct: 57 VVSDAKTGLILEQRNAAVAMPPASVAKSVTALYAFD 92
>gi|271970345|ref|YP_003344541.1| D-alanyl-D-alanine carboxypeptidase-like protein [Streptosporangium
roseum DSM 43021]
gi|270513520|gb|ACZ91798.1| D-alanyl-D-alanine carboxypeptidase (penicillin- binding protein
4)-like protein [Streptosporangium roseum DSM 43021]
Length = 459
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+LD TG + + D PAS TKL+T
Sbjct: 89 GAVVLDAETGATLFGSGADGGVTPASTTKLVT 120
>gi|172041384|ref|YP_001801098.1| putative penicillin-binding protein 4 [Corynebacterium urealyticum
DSM 7109]
gi|171852688|emb|CAQ05664.1| putative penicillin-binding protein 4 [Corynebacterium urealyticum
DSM 7109]
Length = 458
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D TG VI N PAS TK+ T
Sbjct: 82 SAEITDLETGEVIYANNEGKHLVPASSTKVYTTAAAL 118
>gi|16506936|gb|AAL17873.1| K1 beta-lactamase OXY-2 [Klebsiella oxytoca]
Length = 290
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A +R +A +++ G
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 290
>gi|297179873|gb|ADI23933.1| oxacillinase OXA-114b [Achromobacter xylosoxidans]
gi|317406567|gb|EFV86760.1| oxacillinase OXA-114a [Achromobacter xylosoxidans C54]
Length = 275
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 22/243 (9%), Positives = 55/243 (22%), Gaps = 11/243 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD----HPWNPASLT 57
R+ + A+ + + + D G ++ + + PAS
Sbjct: 4 RRLSCALGAALSLSALGGGPVQAAVLCT--VVADAADGRILFQQGTQQACAERYTPASTF 61
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KL A + + + + + + + +
Sbjct: 62 KLAIALMGADAGILQGPHEPVWNYQPAYPDWGGDAWRQPTDPARWIKYSVVWYSQLTAKA 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
K+ G +++ + R + +
Sbjct: 122 LGQDRFQRYTSAFGYGNADVSGEPGKHNGTDGAWIISSLRISPLEQLAFLRKLVNRQLPV 181
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
K + G + Y G++G+ T V A + +
Sbjct: 182 KAAAYELAENLFEAGQADGWRLYG---KTGTGSPGSNGVYTAANAYGW--FVGWARKDGR 236
Query: 238 SLI 240
L+
Sbjct: 237 QLV 239
>gi|229139183|ref|ZP_04267758.1| Beta-lactamase [Bacillus cereus BDRD-ST26]
gi|228644242|gb|EEL00499.1| Beta-lactamase [Bacillus cereus BDRD-ST26]
Length = 312
Score = 44.2 bits (102), Expect = 0.030, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 75 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 132 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRKMGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIARNLKDFTVGNALPHQKRNILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 252 WVVADKSGAGSYGTRNDIAIVWPPNRSPIIIAILSSKDEKEATYD 296
>gi|282852869|ref|ZP_06262210.1| conserved domain protein [Lactobacillus gasseri 224-1]
gi|282555977|gb|EFB61598.1| conserved domain protein [Lactobacillus gasseri 224-1]
Length = 75
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 17/66 (25%)
Query: 1 MRQ-------FLVIIAMAMLSNIFPFLSIAETNK----------LPYYTLLDTNTGHVIA 43
MR+ + ++ ++ I P A + +D +G V+
Sbjct: 1 MRKYKVKWFSIISLLVCILIFWIKPITVKASSINNYHQEQVELQAKSAIAIDLKSGQVLY 60
Query: 44 ENYPDH 49
D
Sbjct: 61 AKNADK 66
>gi|254489962|ref|ZP_05103157.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Methylophaga thiooxidans DMS010]
gi|224465047|gb|EEF81301.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Methylophaga thiooxydans DMS010]
Length = 465
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
L + T ++++NT + + D PAS+ KL+TA
Sbjct: 28 ASLPLLPTGSEASILVVESNTNKTLLNHRSDTLRPPASVQKLVTALAA 75
>gi|34559246|gb|AAQ75379.1| beta-lactamase OXY-2b [Klebsiella oxytoca]
gi|48473857|emb|CAG34107.1| class A beta-lactamase [Klebsiella oxytoca]
Length = 290
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 68/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L + +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTESTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L D Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A D L+ V A +R +A +++ G
Sbjct: 233 VGDKTGSGDYGTTNDIAVIWPEDHAPLVLVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 290
>gi|329956409|ref|ZP_08297006.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides clarus YIT 12056]
gi|328524306|gb|EGF51376.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides clarus YIT 12056]
Length = 482
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 21/87 (24%)
Query: 1 MRQFLVI---IAMAMLSNIFPFLSIAETNKL------------------PYYTLLDTNTG 39
MR++++ + + ++ +I ++ ++ D
Sbjct: 7 MRKYILFPIVLVLTLIPSILSAQGVSPETNSLSSRLDTLIKYRLPAGSNVSISVYDLTAD 66
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D PAS KL+T
Sbjct: 67 KALYSYQADKLSRPASTMKLLTTITAL 93
>gi|302544859|ref|ZP_07297201.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces hygroscopicus ATCC 53653]
gi|302462477|gb|EFL25570.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces himastatinicus ATCC 53653]
Length = 439
Score = 44.2 bits (102), Expect = 0.031, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
S+A +LD+ + VI + PAS TKL TA L +
Sbjct: 70 PSLANDGSSLSGVVLDSASDEVIWGHNASTALMPASNTKLATATAALDQLGPEH 123
>gi|228901086|ref|ZP_04065292.1| Beta-lactamase [Bacillus thuringiensis IBL 4222]
gi|228965469|ref|ZP_04126555.1| Beta-lactamase [Bacillus thuringiensis serovar sotto str. T04001]
gi|228794199|gb|EEM41717.1| Beta-lactamase [Bacillus thuringiensis serovar sotto str. T04001]
gi|228858537|gb|EEN02991.1| Beta-lactamase [Bacillus thuringiensis IBL 4222]
Length = 312
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I P+ + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRPNERFAFASTYKALAAGVLLQQNSID--TLNEVITFTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++HM + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|219920933|emb|CAQ76644.1| beta-lactamase [Klebsiella oxytoca]
gi|219920945|emb|CAQ76650.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L D Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 263
>gi|255046262|gb|ACU00153.1| extended-spectrum beta-lactamase CTX-M-114 [Providencia rettgeri]
Length = 291
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 70/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K M V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKAMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGGYGTTNDIAVIWPKDRAPLILVT 264
>gi|218897489|ref|YP_002445900.1| beta-lactamase Bla1 [Bacillus cereus G9842]
gi|218545254|gb|ACK97648.1| beta-lactamase Bla1 [Bacillus cereus G9842]
Length = 312
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--TLNEVITFTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++ M + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRKMGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKCKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D +
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEASYD 296
>gi|32130561|gb|AAL78282.3| K1 beta-lactamase [Klebsiella oxytoca]
Length = 290
Score = 44.2 bits (102), Expect = 0.032, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 67/238 (28%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A D L+ V A +R +A +++ G
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPEDHAPLVLVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 290
>gi|158319959|ref|YP_001512466.1| beta-lactamase [Alkaliphilus oremlandii OhILAs]
gi|158140158|gb|ABW18470.1| beta-lactamase [Alkaliphilus oremlandii OhILAs]
Length = 257
Score = 43.8 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 35/230 (15%), Positives = 72/230 (31%), Gaps = 6/230 (2%)
Query: 25 TNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
++ + N G +I + D+ + AS KL+ + +KE K + I I+
Sbjct: 12 DIDGNVAVVIKNFNNGEII-QINQDYIFPSASTIKLVIMSELLKQVKENKLSINETIVIT 70
Query: 84 KNASE-YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNT 141
G TL + L+I+ S N + + + + Q +
Sbjct: 71 DKMITGGDGILKELNVGHRFTLGEIMTLMIIISDNTATNLLIDIVGMDNVNRMAQELGLK 130
Query: 142 SKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
L + +YT+A+DM + +Y ++ +K ++
Sbjct: 131 RTKLQRKMMDSVAVK--YGRENYTSAQDMLNILELTYKGENIDGYYSKMMLDILKRQQVG 188
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
KTG ++ + + +I V+ N
Sbjct: 189 GRLNLYLPENTVIAHKTGDLDRLEHDVGIVYLPNCEYIICVLTNETKSNK 238
>gi|260888547|ref|ZP_05899810.1| beta-lactamase [Selenomonas sputigena ATCC 35185]
gi|330838152|ref|YP_004412732.1| hypothetical protein Selsp_0298 [Selenomonas sputigena ATCC 35185]
gi|260861744|gb|EEX76244.1| beta-lactamase [Selenomonas sputigena ATCC 35185]
gi|329745916|gb|AEB99272.1| hypothetical protein Selsp_0298 [Selenomonas sputigena ATCC 35185]
Length = 394
Score = 43.8 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 33/222 (14%), Positives = 79/222 (35%), Gaps = 16/222 (7%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGS 100
+ +++ PAS+ KL K+ L P++I++ N + + +G
Sbjct: 175 LYQSHA---MQPASMIKLFILAYAMQQAKDGTLSLAEPLSITEANIVGGAGQLNWYDRGK 231
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
+T++ L+ +I S N + + L +++++ + G + T + +
Sbjct: 232 QLTIEQLLERMITDSDNTATNILIDRL------GIENIDGYIRQKGYADTRLQHKMMLSN 285
Query: 161 HG--HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
G + ++ +D+ L I + + + +K + KT
Sbjct: 286 QGRPNLSSVKDIGTLLSLIYRGECVDYEHDKKMLQILSRQKDKDC-LPSALPAFLVANKT 344
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
G + A LI V++ R+ + + +L
Sbjct: 345 GEITGVYAD-GGIAWSDAGDLILVVMDENCRDR--QETIALF 383
>gi|150545|gb|AAA98218.1| beta-lactamase [Plasmid pBWH77]
Length = 332
Score = 43.8 bits (101), Expect = 0.033, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 35/134 (26%), Gaps = 11/134 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAI 123
I S N A +
Sbjct: 121 AAITMSDNSAANLL 134
>gi|257136312|gb|ACV44456.1| beta-lactamase OXY-2 [Klebsiella oxytoca]
Length = 290
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L D Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 263
>gi|327334835|gb|EGE76546.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL097PA1]
Length = 457
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 15/77 (19%)
Query: 12 MLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPDHPWNPASL 56
+++ + P A+ ++D TG + ++ + PAS
Sbjct: 57 VVAAVAPTTPSAKPVPATIANRVKSAGAAPGVLGADIMDAATGETLYQSGQNSLLTPASN 116
Query: 57 TKLMTAYVVFSFLKEKK 73
K++TA +
Sbjct: 117 LKVLTAIALLDCTDAGH 133
>gi|126734892|ref|ZP_01750638.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter sp. CCS2]
gi|126715447|gb|EBA12312.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter sp. CCS2]
Length = 490
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 16/44 (36%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ D TG V+ + PAS+TK TA L
Sbjct: 57 GVLVADLQTGEVLEDIQSAKAQPPASVTKAFTALYAIEALGAGH 100
>gi|325204734|gb|ADZ00188.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M01-240355]
Length = 469
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 70
>gi|325197700|gb|ADY93156.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
G2136]
Length = 469
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 70
>gi|325135583|gb|EGC58200.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M0579]
gi|325201557|gb|ADY97011.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M01-240149]
gi|325207538|gb|ADZ02990.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
NZ-05/33]
Length = 469
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 70
>gi|325133609|gb|EGC56269.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M13399]
gi|325143795|gb|EGC66111.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M01-240013]
gi|325206705|gb|ADZ02158.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M04-240196]
Length = 469
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 70
>gi|325129581|gb|EGC52404.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
OX99.30304]
Length = 329
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 70
>gi|325127608|gb|EGC50528.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
N1568]
Length = 469
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 70
>gi|319409878|emb|CBY90192.1| K07259 D-alanyl-D-alanine carboxypeptidase /
D-alanyl-D-alanine-endopeptidase (penicillin-binding
protein 4) [Neisseria meningitidis WUE 2594]
Length = 508
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 72 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 109
>gi|316984395|gb|EFV63368.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria meningitidis H44/76]
Length = 501
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 65 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 102
>gi|315104910|gb|EFT76886.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL050PA2]
Length = 457
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAVALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|314965440|gb|EFT09539.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL082PA2]
gi|315094256|gb|EFT66232.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL060PA1]
gi|327329234|gb|EGE70994.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL103PA1]
Length = 457
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAVALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|314922404|gb|EFS86235.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL001PA1]
Length = 457
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D TG + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAATGETLYQSGQNSLLTPASNLKVLTAVALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|308389897|gb|ADO32217.1| penicillin-binding protein 3; D-alanyl-D-alanine
carboxypeptidase/endopeptidase [Neisseria meningitidis
alpha710]
Length = 508
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 72 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 109
>gi|304388301|ref|ZP_07370417.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria meningitidis ATCC 13091]
gi|304337732|gb|EFM03885.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria meningitidis ATCC 13091]
Length = 469
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 70
>gi|261393129|emb|CAX50735.1| D-alanyl-D-alanine carboxypeptidase (DD-peptidase;
DD-carboxypeptidase) [Neisseria meningitidis 8013]
Length = 469
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 70
>gi|254674218|emb|CBA10002.1| D-alanyl-D-alanine carboxypeptidase [Neisseria meningitidis
alpha275]
Length = 508
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 72 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 109
>gi|254804386|ref|YP_003082607.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria
meningitidis alpha14]
gi|254667928|emb|CBA04118.1| probable D-alanyl-D-alanine carboxypeptidase [Neisseria
meningitidis alpha14]
Length = 508
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 72 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 109
>gi|161869423|ref|YP_001598590.1| penicillin-binding protein 3 [Neisseria meningitidis 053442]
gi|161594976|gb|ABX72636.1| Penicillin-binding protein 3 [Neisseria meningitidis 053442]
Length = 515
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 79 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 116
>gi|121634287|ref|YP_974532.1| putative peptidase [Neisseria meningitidis FAM18]
gi|120865993|emb|CAM09730.1| putative peptidase [Neisseria meningitidis FAM18]
gi|325131446|gb|EGC54153.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
M6190]
gi|325137590|gb|EGC60170.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
ES14902]
Length = 469
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 70
>gi|15677636|ref|NP_274795.1| penicillin-binding protein 3 [Neisseria meningitidis MC58]
gi|7227051|gb|AAF42135.1| penicillin-binding protein 3 [Neisseria meningitidis MC58]
gi|325139620|gb|EGC62159.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
CU385]
gi|325200860|gb|ADY96315.1| serine-type D-Ala-D-Ala carboxypeptidase [Neisseria meningitidis
H44/76]
Length = 469
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 70
>gi|218767619|ref|YP_002342131.1| putative peptidase [Neisseria meningitidis Z2491]
gi|121051627|emb|CAM07927.1| putative peptidase [Neisseria meningitidis Z2491]
Length = 469
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRSDVPVNPASTMKLVTAFAAFK 70
>gi|47570886|gb|AAT35601.1| CTX-M type extended-spectrum beta-lactamase [Escherichia coli]
Length = 291
Score = 43.8 bits (101), Expect = 0.034, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 70/265 (26%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCCTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGKTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N A D+ LI V
Sbjct: 240 SGDYGTTNDTAVIWPKDRAPLILVT 264
>gi|270047566|pdb|2WKE|A Chain A, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
gi|270047567|pdb|2WKE|B Chain B, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
gi|270047568|pdb|2WKE|C Chain C, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
gi|270047569|pdb|2WKE|D Chain D, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
gi|301015723|pdb|2XDM|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39
Dd Peptidase And A Peptidoglycan Mimetic Boronate
Inhibitor
gi|301015724|pdb|2XDM|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39
Dd Peptidase And A Peptidoglycan Mimetic Boronate
Inhibitor
gi|301015725|pdb|2XDM|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39
Dd Peptidase And A Peptidoglycan Mimetic Boronate
Inhibitor
gi|301015726|pdb|2XDM|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39
Dd Peptidase And A Peptidoglycan Mimetic Boronate
Inhibitor
gi|320089689|pdb|2XK1|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
gi|320089690|pdb|2XK1|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
gi|320089691|pdb|2XK1|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
gi|320089692|pdb|2XK1|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
Length = 466
Score = 43.8 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
A + ++DT TG + PAS KL TA
Sbjct: 16 PALEGAVSGVVVVDTATGEELYSRDGGEQLLPASNMKLFTAAAALE 61
>gi|255281771|ref|ZP_05346326.1| peptidoglycan glycosyltransferase [Bryantella formatexigens DSM
14469]
gi|255267838|gb|EET61043.1| peptidoglycan glycosyltransferase [Bryantella formatexigens DSM
14469]
Length = 524
Score = 43.8 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 31/279 (11%), Positives = 68/279 (24%), Gaps = 38/279 (13%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIA--------------------ENYP 47
+ + + + + S A +++ +TG V+A
Sbjct: 178 LILTLDTRLQQAASTALGAYRGAVVVMEPDTGAVLAMVSHPDFDPNAMEEQWEYLIAEDA 237
Query: 48 DHPW---------NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98
P P S K++TA + + Y N +
Sbjct: 238 HSPLLNRATQGLYPPGSTFKILTALEYIQEHEAG----NDYENYTFQCDGYITQNDVTIQ 293
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
+ L + L KF N L ++
Sbjct: 294 CYDGEVHGYENLQQSFQHSCNTSFANIGLQLDLDKFGDLCEKFLFNGDLPTLMPYSSSQF 353
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
+ ++ + + + D + + I + V +G++
Sbjct: 354 --VLNSNSSYGDIMTTSIGQGDTLVSPFHMALIVSTIANDGVMMYPYFVQRVENTEGVEV 411
Query: 219 GFTCASGFNIVASAIQGDQ---SLIAVILGALDRNTRNK 254
T + + SA + D + +V+ G N
Sbjct: 412 NETKPIEYKRIISAQEADILKSYMQSVVEGGTGSYLWND 450
>gi|219920937|emb|CAQ76646.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 43.8 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L D Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPEDHAPLVLVT 263
>gi|71041802|pdb|1W79|A Chain A, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura
R39
gi|71041803|pdb|1W79|B Chain B, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura
R39
gi|71041804|pdb|1W79|C Chain C, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura
R39
gi|71041805|pdb|1W79|D Chain D, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura
R39
gi|71041806|pdb|1W8Q|A Chain A, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura
R39
gi|71041807|pdb|1W8Q|B Chain B, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura
R39
gi|71041808|pdb|1W8Q|C Chain C, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura
R39
gi|71041809|pdb|1W8Q|D Chain D, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura
R39
gi|71041810|pdb|1W8Y|A Chain A, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase
From Actinomadura R39.
gi|71041811|pdb|1W8Y|B Chain B, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase
From Actinomadura R39.
gi|71041812|pdb|1W8Y|C Chain C, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase
From Actinomadura R39.
gi|71041813|pdb|1W8Y|D Chain D, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase
From Actinomadura R39.
gi|215261075|pdb|2VGJ|A Chain A, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
gi|215261076|pdb|2VGJ|B Chain B, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
gi|215261077|pdb|2VGJ|C Chain C, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
gi|215261078|pdb|2VGJ|D Chain D, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
gi|215261079|pdb|2VGK|A Chain A, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
gi|215261080|pdb|2VGK|B Chain B, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
gi|215261081|pdb|2VGK|C Chain C, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
gi|215261082|pdb|2VGK|D Chain D, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
gi|320089693|pdb|2XLN|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
gi|320089694|pdb|2XLN|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
gi|320089695|pdb|2XLN|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
gi|320089696|pdb|2XLN|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
Length = 489
Score = 43.8 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
A + ++DT TG + PAS KL TA
Sbjct: 16 PALEGAVSGVVVVDTATGEELYSRDGGEQLLPASNMKLFTAAAALE 61
>gi|729292|sp|P39045|DAC_ACTSP RecName: Full=D-alanyl-D-alanine carboxypeptidase;
Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
Full=Penicillin-binding protein; Short=PBP; Flags:
Precursor
gi|38767|emb|CAA46023.1| D-alanyl-D-alanine carboxypeptidase [Actinomadura sp.]
Length = 538
Score = 43.8 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
A + ++DT TG + PAS KL TA
Sbjct: 65 PALEGAVSGVVVVDTATGEELYSRDGGEQLLPASNMKLFTAAAALE 110
>gi|296863468|pdb|3HUO|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
Complex Benzylpenicillin
gi|296863469|pdb|3HUO|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
Complex Benzylpenicillin
gi|296863470|pdb|3HVF|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
Complex Hydrolyzed Benzylpenicillin
gi|296863471|pdb|3HVF|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 S70g In
Complex Hydrolyzed Benzylpenicillin
gi|297342912|pdb|3HLW|A Chain A, Ctx-M-9 S70g In Complex With Cefotaxime
gi|297342913|pdb|3HLW|B Chain B, Ctx-M-9 S70g In Complex With Cefotaxime
gi|298508309|pdb|3HRE|A Chain A, X-Ray Crystallographic Structure Of Ctx-M-9 S70g
gi|298508310|pdb|3HRE|B Chain B, X-Ray Crystallographic Structure Of Ctx-M-9 S70g
Length = 263
Score = 43.8 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 37/242 (15%), Positives = 64/242 (26%), Gaps = 12/242 (4%)
Query: 33 LLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+D + V+ D + +K+M A V + +K +L P+ I
Sbjct: 24 LIDTADNTQVLY--RGDERFPMCGTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYN 81
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSA 149
+ TMTL + S N + F + + + + L +
Sbjct: 82 PIAEKHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTE 141
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A T L Q+ + A
Sbjct: 142 PTLNTAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLP 201
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSM 262
G KTG N +A + L+ V A R +A +++
Sbjct: 202 TSWTAGDKTGSGDYGTTNDIAVIWPQGRAPLVLVTYFTQPQQNAESRRDVLASAARIIAE 261
Query: 263 GF 264
G
Sbjct: 262 GL 263
>gi|160899976|ref|YP_001565558.1| beta-lactamase [Delftia acidovorans SPH-1]
gi|160365560|gb|ABX37173.1| Beta-lactamase [Delftia acidovorans SPH-1]
Length = 266
Score = 43.8 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 16/215 (7%), Positives = 47/215 (21%), Gaps = 6/215 (2%)
Query: 32 TLLDTNTGHVIAENYPD--HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ D +TG + + P PAS K+ + + + + +
Sbjct: 28 IVADADTGQSLVHSGPACAERVTPASTFKIAISLMGYDAGILQDESRPAWPYQPEYPDWG 87
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+ D+ + + + + G +
Sbjct: 88 GDAWRREITPQAWMKDSVFWYSQQVARELGQQRFGAYVRAFQYGNEDVSAVAVAHPGHNG 147
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+++ + R + + + + + G
Sbjct: 148 AWVVSSLRISAAEQVAFMRKIVRRELSVSSQAIDMTARITRYPVPVDGWTVHGKTGTGSP 207
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ + V A + + L+ L
Sbjct: 208 GSDNRYDAS----RAYGWYVGWATKDQRRLVFATL 238
>gi|1705481|sp|P52682|BLAN_SERMA RecName: Full=Carbapenem-hydrolyzing beta-lactamase Sme-1; Flags:
Precursor
gi|472864|emb|CAA82281.1| Sme-1 carbapenem hydrolysing beta-lactamase [Serratia marcescens]
Length = 294
Score = 43.8 bits (101), Expect = 0.035, Method: Composition-based stats.
Identities = 38/260 (14%), Positives = 67/260 (25%), Gaps = 19/260 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-------------YYTLLDTNTGHVIAENYPD 48
+ + ++ + + F + +DT +G+ D
Sbjct: 8 KTASFLFSVCLALSAFNAHANKSDAAAKQIKKLEEDFDGRIGVFAIDTGSGNT-FGYRSD 66
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K A V +++KK + + EY +T KGS MTL +
Sbjct: 67 ERFPLCSSFKGFLAAAVLERVQQKKLDINQKVKYESRDLEYHSPITTKYKGSGMTLGDMA 126
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN---LGLSATHFMNAHGVVQHGHYT 165
+ S N I E + + M + N L A + T
Sbjct: 127 SAALQYSDNGATNIIMERFLGGPEGMTKFMRSIGDNEFRLDRWELELNTAIPGDKRDTST 186
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF--TCA 223
L+ + + A G KTG
Sbjct: 187 PKAVANSLNKLALGNVLNAKVKAIYQNWLKGNTTGDARIRASVPADWVVGDKTGSCGAIG 246
Query: 224 SGFNIVASAIQGDQSLIAVI 243
+ + + LI I
Sbjct: 247 TANDYAVIWPKNRAPLIVSI 266
>gi|149915753|ref|ZP_01904278.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter sp. AzwK-3b]
gi|149810335|gb|EDM70180.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter sp. AzwK-3b]
Length = 497
Score = 43.8 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
Y+++D +G ++ PAS+TK +TA
Sbjct: 63 TYSVMDVKSGLILEGRGGHEGQPPASVTKAITAIYALR 100
>gi|282897431|ref|ZP_06305433.1| Penicillin-binding protein, transpeptidase [Raphidiopsis brookii
D9]
gi|281198083|gb|EFA72977.1| Penicillin-binding protein, transpeptidase [Raphidiopsis brookii
D9]
Length = 523
Score = 43.8 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 36/227 (15%), Positives = 78/227 (34%), Gaps = 9/227 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
LS A N +P ++D ++G + ++ + AS K+ + K L
Sbjct: 207 LSAANPNLIPGVFIVDIDSGA-YVDVSGNNNFPAASTIKIPVLVAFLEDVDRGKIRLDEI 265
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T+ + N + + ++ S N + L + +
Sbjct: 266 LTMEQEMVAGGSGNLRTMPVGTKLKSIEVATKMMTISDNTATNMLISKL-----GGKELL 320
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N+ ++ GL T + ++ + T+ +++A L ++ M + L+I +
Sbjct: 321 NSRFRSWGLVNTAIQSPLPDLEGTNTTSPKELASLIAKVNQGELISMRSRDL-MLDIMRR 379
Query: 199 KYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ G GA KTG + + + IA I+
Sbjct: 380 TQRDDLLPAGLGEGATAYHKTGDIGTMLADAGLIDVPTGKRYIASIM 426
>gi|46403069|gb|AAS92558.1| carbapenem-hydrolyzing beta-lactamase SME-3 [Serratia marcescens]
Length = 294
Score = 43.8 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 38/260 (14%), Positives = 67/260 (25%), Gaps = 19/260 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP-------------YYTLLDTNTGHVIAENYPD 48
+ + ++ + + F + +DT +G+ D
Sbjct: 8 KTASFLFSVCLALSAFNAHANKSDAAAKQIKKLEEDFDGRIGVFAIDTGSGNT-FGYRSD 66
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K A V +++KK + + EY +T KGS MTL +
Sbjct: 67 ERFPLCSSFKGFLAAAVLERVQQKKLDINQKVKYESRDLEYYSPITTKYKGSGMTLGDMA 126
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN---LGLSATHFMNAHGVVQHGHYT 165
+ S N I E + + M + N L A + T
Sbjct: 127 SAALQYSDNGATNIIMERFLGGPEGMTKFMRSIGDNEFRLDRWELELNTAIPGDKRDTST 186
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF--TCA 223
L+ + + A G KTG
Sbjct: 187 PKAVANSLNKLALGNVLNAKVKAIYQNWLKGNTTGDARIRASVPADWVVGDKTGSCGAYG 246
Query: 224 SGFNIVASAIQGDQSLIAVI 243
+ + + LI I
Sbjct: 247 TANDYAVIWPKNRAPLIVSI 266
>gi|49185337|ref|YP_028589.1| beta-lactamase [Bacillus anthracis str. Sterne]
gi|49179264|gb|AAT54640.1| beta-lactamase [Bacillus anthracis str. Sterne]
Length = 301
Score = 43.8 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 64 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 120
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 121 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRQMGDRVTMSDRFETE 180
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 181 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTKWMKGNATGDKLIRAGVPTN 240
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 241 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYD 285
>gi|294777500|ref|ZP_06742951.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides vulgatus PC510]
gi|294448568|gb|EFG17117.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides vulgatus PC510]
Length = 466
Score = 43.8 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL-----------PYYTLLDTNTGHVIAENYPDH 49
M++ L + + + +++ + D TG + D
Sbjct: 1 MKRVLFFFLLILSIHFINAQPLSQRLDALLHEEVLKTSEVGIAVFDLTTGKSVYRYQDDK 60
Query: 50 PWNPASLTKLMTAYVVF 66
+ PAS+ K++T+
Sbjct: 61 LYRPASVEKIITSVTAL 77
>gi|134133905|gb|ABO61010.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 299
Score = 43.8 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 31/203 (15%), Positives = 55/203 (27%), Gaps = 2/203 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K M V S + L T + I+
Sbjct: 57 VLNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAGKDLLSYAP 116
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 117 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSITRNDRNEP 176
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A L+ + Q Q I + A
Sbjct: 177 DVNLFAKGDPRDTTSPAAMATSLARFAVGNGLQPASRRQFADWLIDNQTGDACLRAGLGK 236
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 237 RWRVGDKTGSNGDDTRNDIAVLW 259
>gi|229156083|ref|ZP_04284182.1| Beta-lactamase [Bacillus cereus ATCC 4342]
gi|228627404|gb|EEK84132.1| Beta-lactamase [Bacillus cereus ATCC 4342]
Length = 332
Score = 43.8 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ L I +K
Sbjct: 95 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSID--TLNEVIKFTKEDLVDYSPV 151
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 152 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRKMGDRVTMSDRFETE 211
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + + A
Sbjct: 212 LNEAIPGDIRDTSTAKAIATNLKDLTVGNALPHQKRNILTDWMKGNATGDKLIRAGVPTD 271
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N VA ++ +I IL + D
Sbjct: 272 WVVADKSGAGSYGTRNDVAIVWPPNRSPIIIAILSSKDEKEATYD 316
>gi|219920991|emb|CAQ76673.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 43.8 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 263
>gi|126149283|dbj|BAF47414.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 295
Score = 43.8 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 31/203 (15%), Positives = 55/203 (27%), Gaps = 2/203 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K M V S + L T + I+
Sbjct: 53 VLNTGNGRRIGGHRQDERFPMCSTFKSMLVAHVLSLADAGRVSLDTRVPIAGKDLLSYAP 112
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 113 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSITRNDRNEP 172
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A L+ + Q Q I + A
Sbjct: 173 DVNLFAKGDPRDTTSPAAMATSLARFAVGNGLQPASRRQFADWLIDNQTGDACLRAGLGK 232
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 233 RWRVGDKTGSNGDDTRNDIAVLW 255
>gi|33326707|gb|AAQ08771.1| putative penicillin binding protein Pbp [Bacillus subtilis]
Length = 181
Score = 43.8 bits (101), Expect = 0.036, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
TG V+ + D PASL KL+TA
Sbjct: 12 AKTGEVLFGSREDMRLRPASLMKLLTASAAL 42
>gi|260914802|gb|ACX54259.1| beta-lactamase CTX-M-14 [Escherichia coli]
Length = 241
Score = 43.8 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 33/231 (14%), Positives = 57/231 (24%), Gaps = 17/231 (7%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N + F + + + + L + A T
Sbjct: 129 ALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLNTAIPGDPRDTTTPRA 188
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
L Q+ + A G KTG
Sbjct: 189 MAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWTVGDKTG 239
>gi|229070009|ref|ZP_04203285.1| Beta-lactamase [Bacillus cereus F65185]
gi|228713110|gb|EEL65009.1| Beta-lactamase [Bacillus cereus F65185]
Length = 312
Score = 43.8 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I P+ + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRPNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++ M + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRQMGDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGIRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|229150730|ref|ZP_04278944.1| Beta-lactamase [Bacillus cereus m1550]
gi|228632817|gb|EEK89432.1| Beta-lactamase [Bacillus cereus m1550]
Length = 312
Score = 43.8 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I P+ + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRPNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++HM + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPVEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|219920917|emb|CAQ76636.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 43.8 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 263
>gi|219920895|emb|CAQ76625.1| beta-lactamase [Klebsiella oxytoca]
gi|219920901|emb|CAQ76628.1| beta-lactamase [Klebsiella oxytoca]
gi|219920985|emb|CAQ76670.1| beta-lactamase [Klebsiella oxytoca]
gi|219920987|emb|CAQ76671.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 43.8 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L D Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPEDHAPLVLVT 263
>gi|294813248|ref|ZP_06771891.1| Putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
clavuligerus ATCC 27064]
gi|326441642|ref|ZP_08216376.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces clavuligerus ATCC 27064]
gi|294325847|gb|EFG07490.1| Putative D-alanyl-D-alanine carboxypeptidase [Streptomyces
clavuligerus ATCC 27064]
Length = 470
Score = 43.8 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+++DT TG + P PAS K+ T
Sbjct: 110 RSASVVDTATGRQLYGTDAARPMTPASTIKIATTVAALHA 149
>gi|254388636|ref|ZP_05003869.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
gi|197702356|gb|EDY48168.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
Length = 455
Score = 43.8 bits (101), Expect = 0.037, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+++DT TG + P PAS K+ T
Sbjct: 95 RSASVVDTATGRQLYGTDAARPMTPASTIKIATTVAALHA 134
>gi|268317767|ref|YP_003291486.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Rhodothermus marinus DSM 4252]
gi|262335301|gb|ACY49098.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Rhodothermus marinus DSM 4252]
Length = 477
Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D +G V+ + PAS KL+T
Sbjct: 47 YVADVESGRVLVAQNAEQGLLPASTHKLLTTAAALD 82
>gi|56807794|ref|ZP_00365645.1| COG1686: D-alanyl-D-alanine carboxypeptidase [Streptococcus
pyogenes M49 591]
Length = 267
Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 50/216 (23%), Positives = 83/216 (38%), Gaps = 32/216 (14%)
Query: 108 LKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH----- 161
+ + V S+N V IA F+ +N T+K LG++ THF NA G
Sbjct: 1 MTMTAVPSSNAATVMIANYLSNNDASAFIDRINATAKQLGMTNTHFSNASGAAAQAFQGY 60
Query: 162 ----------GHYTTARDMAILSWRIKTDFPQ-----YMHYFQIKGLEIKGKKYPNTNW- 205
+ TTARD++ L + +P+ +++ N
Sbjct: 61 YNPTKYDLSASNITTARDLSKLLYAFLKKYPEIISFTNKSVVHTMVGTPYEEEFHTYNHS 120
Query: 206 ---AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT------RNKVS 256
G DG+KTG + ++ FN + +A +G LI +++G D + R+
Sbjct: 121 LPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIVMGVGDWSDQNGEFYRHPFV 180
Query: 257 ASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPN 291
+L GF +KT KK ++ Q P
Sbjct: 181 NALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPK 216
>gi|303233335|ref|ZP_07320005.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
PB189-T1-4]
gi|302480580|gb|EFL43670.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
PB189-T1-4]
Length = 315
Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 35/252 (13%), Positives = 70/252 (27%), Gaps = 26/252 (10%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+++ D + + ASL+KL S L +
Sbjct: 61 DALAFSVYDMDANAYLFYEGAGQEPTVASLSKLFAIDYALSK-----VKLDDVFEANDET 115
Query: 87 SE--YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ S+ T T + ++V S ND A +A ++ K + +
Sbjct: 116 LKLVPAGSSMANLTRGTYTAKQIFQAMLVPSGNDAAYVMAYNIGKMDLGAGHSAKEYINH 175
Query: 145 L-------------GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIK 191
G + + + + + + + +
Sbjct: 176 FVKSLRTYLARESYGKTDLYDPSGYSMQATTNLDDINRVTLKLLNYDFVKECMGESSFTI 235
Query: 192 GLEIKGKKYPNTNWAVG-----TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
+ + NTN + G+KTG T AS +NI+A + + L A
Sbjct: 236 TTKQGNFTWKNTNEFLDKESLFYNSHIKGVKTG-TMASSYNIIALYENNGKRYLITCLAA 294
Query: 247 LDRNTRNKVSAS 258
R + +
Sbjct: 295 HSNKDRYQAVQA 306
>gi|224537216|ref|ZP_03677755.1| hypothetical protein BACCELL_02093 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521172|gb|EEF90277.1| hypothetical protein BACCELL_02093 [Bacteroides cellulosilyticus
DSM 14838]
Length = 475
Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ D TG + D PAS KL+T +
Sbjct: 53 VYDLTTGKSLYTYQSDKLSRPASTMKLLTTITALAHPD 90
>gi|198274423|ref|ZP_03206955.1| hypothetical protein BACPLE_00571 [Bacteroides plebeius DSM
17135]
gi|198272625|gb|EDY96894.1| hypothetical protein BACPLE_00571 [Bacteroides plebeius DSM
17135]
Length = 471
Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 14/81 (17%)
Query: 1 MRQFLVIIAMAMLSNIFP-------------FLSIAETNKLPYYTLL-DTNTGHVIAENY 46
M++ ++ L F + ++ D G +
Sbjct: 1 MKRISGVLFFLFLWAGFLHAQTLLTDELNKLISTDPLLKTSEVGIVVHDLTAGKELYSYQ 60
Query: 47 PDHPWNPASLTKLMTAYVVFS 67
D + PAS+ K++TA
Sbjct: 61 ADKLYRPASIEKVITAVTALD 81
>gi|326333089|ref|ZP_08199338.1| LigA [Nocardioidaceae bacterium Broad-1]
gi|325949072|gb|EGD41163.1| LigA [Nocardioidaceae bacterium Broad-1]
Length = 256
Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 33/234 (14%), Positives = 64/234 (27%), Gaps = 17/234 (7%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-------------P 90
+ ASL K+ A + L PI + +
Sbjct: 19 AQNVNQQHYAASLMKVPVAIAAYRLRDRGLVSLDEPIAVHPDFDSAVTGSRFEMSREEDQ 78
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ GS + L + ++ + S N + E + E V + ++
Sbjct: 79 DPVTWEAVGSQLPLGDLVRRSLTVSGNLAVNLVLERVGLEEVAAVLADAGVTPMTTIARG 138
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ TA DM L ++ + + ++Y +
Sbjct: 139 IEDAPAREAGLQNLVTANDMGKLLTKLASGRLLSPESTAEIEGILVAQEYRDAIPLGVPE 198
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL--GALDRNT--RNKVSASLL 260
G KTG+ ++ + + V+L G D + R A L
Sbjct: 199 DAVVGNKTGWVDGVRHDMAIIRPAQGEPQVMVVLTTGLDDDESEFRISEVARYL 252
>gi|297179875|gb|ADI23934.1| oxacillinase OXA-114c [Achromobacter xylosoxidans]
Length = 275
Score = 43.8 bits (101), Expect = 0.038, Method: Composition-based stats.
Identities = 25/255 (9%), Positives = 57/255 (22%), Gaps = 11/255 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD----HPWNPASLT 57
R+ + A+ + + + D G ++ + + PAS
Sbjct: 4 RRLSCALGAALSLSALGGGPVQAAVLCT--VVADAADGRILFQQSTQQACAERYTPASTF 61
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KL A + + + + + + + +
Sbjct: 62 KLAIALMGADAGILQGPHEPVWNYQPAYPDWGGDAWRQPTDPARWIKYSVVWYSQLTAKA 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
K+ G +++ + R L R
Sbjct: 122 LGQDRFQRYTSAFGYGNADVSGEPGKHNGTDGAWIISSLRISPLEQLAFLR---KLVNRQ 178
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + G++G+ T V A + +
Sbjct: 179 LPVKAAAYELADNLFEVGQADGWRLYGKTGTGSPGSNGVYTAANAYGW--FVGWARKDGR 236
Query: 238 SLIAVILGALDRNTR 252
L+ L +R TR
Sbjct: 237 QLVYARLLQDERATR 251
>gi|6580703|emb|CAB63490.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
gi|22549339|emb|CAD44949.1| beta-lactamase L2 precursor [Stenotrophomonas maltophilia]
gi|160548115|gb|ABX44761.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 303
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 61/203 (30%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G I + D + S K M A V S + A+L + + +
Sbjct: 62 LLDTASGRRI-GHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAP 120
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +T
Sbjct: 121 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEP 180
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + + Q Q+ I + A
Sbjct: 181 ELNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGK 240
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 241 RWRVGDKTGSNGEDARNDIAVLW 263
>gi|325918694|ref|ZP_08180792.1| beta-lactamase class A [Xanthomonas vesicatoria ATCC 35937]
gi|325535086|gb|EGD06984.1| beta-lactamase class A [Xanthomonas vesicatoria ATCC 35937]
Length = 297
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 41/278 (14%), Positives = 77/278 (27%), Gaps = 25/278 (8%)
Query: 2 RQFLVIIAMAMLSNIF-PFLSIAETNKLP-----YYT-------------LLDTNTGHVI 42
R+FL ML P +++ + LLD+ TG +
Sbjct: 5 REFLYATGAGMLFAASRPARALSPAVNADDLLRAQWAEIERGTGGRLGISLLDSATGWRL 64
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
+ + + S K + A V + K L P+ I + + G +
Sbjct: 65 GQR-ENERFPMCSTFKFVLAAAVLQQVDRGKLSLAQPVKIRASDMLEHAPVTKGHVGGAL 123
Query: 103 TLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
++ + + ++ S N A + F++ + +
Sbjct: 124 SVGDLCRATMIYSDNPAANLLFPLVGGPPGVTAFLRSIGDAKTRSDRYEPEMNGFAPGEP 183
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
T A + L + D Q Q+ I + + A T G KTG
Sbjct: 184 RDTTTPAAMASTLHTLLLGDALQPASRTQLTDWMIDNRTGDDCLRAGFTRDWKIGDKTGS 243
Query: 221 TCASGFNIVASAIQGDQS---LIAVILGALDRNTRNKV 255
N +A L+ L + +
Sbjct: 244 NGTDTRNDIAILWPPKGRPPLLLTTYLNGAKVDDAARD 281
>gi|219920955|emb|CAQ76655.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 263
>gi|219920951|emb|CAQ76653.1| beta-lactamase [Klebsiella oxytoca]
gi|219920975|emb|CAQ76665.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 263
>gi|166225923|sp|Q5YXD6|BLAC_NOCFA RecName: Full=Beta-lactamase FAR-1; Flags: Precursor
Length = 313
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 36/213 (16%), Positives = 59/213 (27%), Gaps = 3/213 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT +G V+A D + AS K + + + S+
Sbjct: 74 VDTTSGAVVAYR-ADERFGMASTFKGLACGALLREHPLSSGYFDQVVRYSREEVVSYSPV 132
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + + MT+ I S N I + F++ + + L T
Sbjct: 133 TETRVDTGMTVAELCHATITVSDNTAGNQILKLLGGPAGFTAFLRSLGDEVSRLDRWETE 192
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ T A A + D Q++ + A
Sbjct: 193 LNEVPPGEERDTTTPAAVAANYRALVLGDVLAEPERAQLRDWLVANTTGDQRIRAGVPAG 252
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
G KTG G N VA A I + L
Sbjct: 253 WTVGDKTGGGSHGGNNDVAVAWTETGDPIVIAL 285
>gi|190575578|ref|YP_001973423.1| putative beta-lactamase [Stenotrophomonas maltophilia K279a]
gi|10242340|gb|AAG15385.1|AF299368_1 L2 beta-lactamase [Stenotrophomonas maltophilia]
gi|190013500|emb|CAQ47135.1| putative beta-lactamase [Stenotrophomonas maltophilia K279a]
gi|221229307|gb|ABO61008.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
gi|221229310|gb|ABO61009.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 303
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 61/203 (30%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G I + D + S K M A V S + A+L + + +
Sbjct: 62 LLDTASGRRI-GHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAP 120
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +T
Sbjct: 121 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEP 180
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + + Q Q+ I + A
Sbjct: 181 ELNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGK 240
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 241 RWRVGDKTGSNGEDARNDIAVLW 263
>gi|54024277|ref|YP_118519.1| putative class A beta-lactamase [Nocardia farcinica IFM 10152]
gi|54015785|dbj|BAD57155.1| putative class A beta-lactamase [Nocardia farcinica IFM 10152]
Length = 297
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 36/213 (16%), Positives = 59/213 (27%), Gaps = 3/213 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT +G V+A D + AS K + + + S+
Sbjct: 58 VDTTSGAVVAYR-ADERFGMASTFKGLACGALLREHPLSSGYFDQVVRYSREEVVSYSPV 116
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + + MT+ I S N I + F++ + + L T
Sbjct: 117 TETRVDTGMTVAELCHATITVSDNTAGNQILKLLGGPAGFTAFLRSLGDEVSRLDRWETE 176
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ T A A + D Q++ + A
Sbjct: 177 LNEVPPGEERDTTTPAAVAANYRALVLGDVLAEPERAQLRDWLVANTTGDQRIRAGVPAG 236
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
G KTG G N VA A I + L
Sbjct: 237 WTVGDKTGGGSHGGNNDVAVAWTETGDPIVIAL 269
>gi|219920899|emb|CAQ76627.1| beta-lactamase [Klebsiella oxytoca]
gi|219920931|emb|CAQ76643.1| beta-lactamase [Klebsiella oxytoca]
gi|219920947|emb|CAQ76651.1| beta-lactamase [Klebsiella oxytoca]
gi|219920949|emb|CAQ76652.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 43.8 bits (101), Expect = 0.039, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 263
>gi|229079705|ref|ZP_04212238.1| Beta-lactamase [Bacillus cereus Rock4-2]
gi|228703545|gb|EEL55998.1| Beta-lactamase [Bacillus cereus Rock4-2]
Length = 312
Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I P+ + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRPNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++ M + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRQMGDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGIRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|126727932|ref|ZP_01743758.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacterales bacterium HTCC2150]
gi|126702792|gb|EBA01899.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacterales bacterium HTCC2150]
Length = 499
Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ D TG V+ P PAS+ K +TA + L
Sbjct: 65 SCVVADARTGKVLEVLNPVLQLPPASVAKAITALYAWENLGPGH 108
>gi|38492524|pdb|1N4O|A Chain A, Crystal Structure Of The Class A Beta-Lactamase L2 From
Stenotrophomonas Maltophilia
gi|38492525|pdb|1N4O|B Chain B, Crystal Structure Of The Class A Beta-Lactamase L2 From
Stenotrophomonas Maltophilia
gi|46015008|pdb|1O7E|A Chain A, Crystal Structure Of The Class A Beta-Lactamse L2 From
Stenotrophomonas Maltophilia At 1.51 Angstrom
gi|46015009|pdb|1O7E|B Chain B, Crystal Structure Of The Class A Beta-Lactamse L2 From
Stenotrophomonas Maltophilia At 1.51 Angstrom
Length = 276
Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 61/203 (30%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G I + D + S K M A V S + A+L + + +
Sbjct: 35 LLDTASGRRI-GHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVGEADLLSHAP 93
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +T
Sbjct: 94 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEP 153
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + + Q Q+ I + A
Sbjct: 154 ELNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGK 213
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 214 RWRVGDKTGSNGEDARNDIAVLW 236
>gi|18129353|emb|CAD20587.1| beta-lactamase class A [Kluyvera ascorbata]
Length = 291
Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 38/233 (16%), Positives = 65/233 (27%), Gaps = 11/233 (4%)
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100
++ D + S +K+M A V + K +L + I K+ +
Sbjct: 61 ILY--RADERFAKCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAEKHVNG 118
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGV 158
TMTL + S N + L +K F + + + + L + A
Sbjct: 119 TMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLNTAIPG 178
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
T L Q+ + A G KT
Sbjct: 179 DPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWVVGDKT 238
Query: 219 GFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G N +A + L+ V A R +A +++ GF
Sbjct: 239 GSGDYGTTNDIAVIWPENHAPLVLVTYFTQPEQKAESRRDVLAAAAKIVTHGF 291
>gi|228927566|ref|ZP_04090618.1| Beta-lactamase [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228832046|gb|EEM77631.1| Beta-lactamase [Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
Length = 312
Score = 43.8 bits (101), Expect = 0.040, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 75 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 132 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRQMGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTKWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 252 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKRATYD 296
>gi|39976195|ref|XP_369488.1| hypothetical protein MGG_05976 [Magnaporthe oryzae 70-15]
gi|145011750|gb|EDJ96406.1| hypothetical protein MGG_05976 [Magnaporthe oryzae 70-15]
Length = 405
Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
D + AS TKLMTA + +++ L +
Sbjct: 49 AFDMDTVVSIASCTKLMTAVLALQVVQDGLINLDDAEPV 87
>gi|54887464|emb|CAH10074.1| extended-spectrum beta-lactamase [Escherichia coli]
Length = 264
Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats.
Identities = 29/227 (12%), Positives = 72/227 (31%), Gaps = 17/227 (7%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L +T+++ A + K
Sbjct: 35 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQSVTVNRAAVLQNTWSPMMKDHQGDEFT 94
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ----- 160
A++ L+ S + + L + Q ++ ++LG+ + +
Sbjct: 95 VAVQQLLQYSVSHSDNVACDLLFELV-GGPQALHAYIQSLGVKEAAVVANEAQMHADDQV 153
Query: 161 -HGHYTTARDMAILSWRIKTDFP--------QYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ ++T+ + A + + + + + + K V
Sbjct: 154 QYQNWTSMKAAAQVLQKFEQKKQLSETSQALLWKWMVETTTGPQRLKGLLPAGTIVAHKT 213
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-RNKVSA 257
G G++ G T A+ + + L+ + + R +
Sbjct: 214 GTSGVRAGKTAATNDA-GVIMLPDGRPLLVAVFVKDSAESERTNEAI 259
>gi|37951601|gb|AAR05437.1| extended-spectrum beta-lactamase CTX-M32 [Klebsiella pneumoniae]
Length = 291
Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats.
Identities = 39/265 (14%), Positives = 72/265 (27%), Gaps = 28/265 (10%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K++ A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVIAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 240 SGDYGTTNDIAVIWPKDRAPLILVT 264
>gi|10946527|gb|AAG23870.1| beta-lactamase PSE-5 [Pseudomonas aeruginosa]
Length = 288
Score = 43.8 bits (101), Expect = 0.041, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGKVNSNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 121 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 181 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 240
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 241 TAVVWSEHQAPIIV 254
>gi|219920957|emb|CAQ76656.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPEDHAPLVLVT 263
>gi|172037246|ref|YP_001803747.1| putative D-alanyl-D-alanine carboxypeptidase [Cyanothece sp. ATCC
51142]
gi|171698700|gb|ACB51681.1| putative D-alanyl-D-alanine carboxypeptidase [Cyanothece sp. ATCC
51142]
Length = 296
Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYY-TLLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
A+++ + + ++ L++ + G V+ + D + PAS K+ T
Sbjct: 62 CAALITPVIDNIISPYE---KHWGILVEKLDDGTVLYSHNADRHFIPASNNKIFTTAAAL 118
Query: 67 S----FLKEKKAMLTTPITISK 84
K L + + ++
Sbjct: 119 QLKTPQSKIGSKSLQSWVNVTN 140
>gi|229161441|ref|ZP_04289422.1| Beta-lactamase [Bacillus cereus R309803]
gi|228621978|gb|EEK78823.1| Beta-lactamase [Bacillus cereus R309803]
Length = 312
Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ + L IT +K
Sbjct: 75 IDTGTHQTIAYR-PNERFAFASTYKALAAGVLLQQNSIE--KLNEVITYTKGDLVEYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 132 TERHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRQMEDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPVHKRNILTEWMKGNATGDKLIRAGVPNG 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|78213467|ref|YP_382246.1| beta-lactamase family protein [Synechococcus sp. CC9605]
gi|78197926|gb|ABB35691.1| possible beta-lactamase family protein [Synechococcus sp. CC9605]
Length = 381
Score = 43.8 bits (101), Expect = 0.042, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 54/155 (34%), Gaps = 6/155 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + Y L+ + G A + P AS K V L +
Sbjct: 112 LAAQQSNLQASAYMLI-LDDGRF-AAMQAERPMAAASSIKTPILLAVLELLDQGTLQWNE 169
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
P+T+++ + + + + +++ +++ A + + ++ +
Sbjct: 170 PLTLTEELVGGGAGWMASRPLGSRFPTHEVATEMIRVSDNSATNLMIA----RAGGMEAI 225
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N + L L +T N + + T+ARD++
Sbjct: 226 NARFQELDLPSTMVNNWLPDLDGTNTTSARDLSRA 260
>gi|289706995|ref|ZP_06503330.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Micrococcus luteus SK58]
gi|289556320|gb|EFD49676.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Micrococcus luteus SK58]
Length = 477
Score = 43.4 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTA 62
D TG V+ D P PAS K++ A
Sbjct: 95 DLATGEVLYARDADEPVAPASSLKVLAA 122
>gi|290958779|ref|YP_003489961.1| carboxypeptidase [Streptomyces scabiei 87.22]
gi|260648305|emb|CBG71416.1| putative carboxypeptidase [Streptomyces scabiei 87.22]
Length = 444
Score = 43.4 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++D + V+ + D AS TKL TA
Sbjct: 88 VVIDAKSDKVVWGHNADTALMAASNTKLATATAAL 122
>gi|239916680|ref|YP_002956238.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Micrococcus luteus NCTC 2665]
gi|281414862|ref|ZP_06246604.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
protein [Micrococcus luteus NCTC 2665]
gi|239837887|gb|ACS29684.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Micrococcus luteus NCTC 2665]
Length = 477
Score = 43.4 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTA 62
D TG V+ D P PAS K++ A
Sbjct: 95 DLATGEVLYARDADEPVAPASSLKVLAA 122
>gi|13959309|sp|O07293|BLO18_PSEAE RecName: Full=Beta-lactamase OXA-18; AltName: Full=Penicillinase;
Flags: Precursor
gi|2149411|gb|AAB58555.1| class D beta-lactamase [Pseudomonas aeruginosa]
gi|209981016|gb|ACJ05191.1| OXA-18 [Pseudomonas aeruginosa]
Length = 275
Score = 43.4 bits (100), Expect = 0.042, Method: Composition-based stats.
Identities = 30/240 (12%), Positives = 74/240 (30%), Gaps = 10/240 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYP-DHPWNPASLTKLM 60
R F+ ++ + + F KL ++D +G ++ D + P S KL
Sbjct: 11 RHFIFAVSFVISTVCLTFSPANAAQKLSCTLVIDEASGDLLHREGSCDKAFAPMSTFKLP 70
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
A + + TTP K S + D+ + +
Sbjct: 71 LAIMGYDAD--ILLDATTPRWDYKPEFNGYKSQQKPTDPTIWLKDSIVWYSQELTRRLGE 128
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
++ + + + + K+ GL+ + + + L ++ +
Sbjct: 129 SRFSDYVQRFDYGNKDVSGDPGKHNGLTHA------WLASSLKISPEEQVRFLRRFLRGE 182
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
P ++ + + + + T G+ G G+ + A + D+ ++
Sbjct: 183 LPVSEDALEMTKAVVPHFEAGDWDVQGKTGTGSLSDAKGGKAPIGW-FIGWATRDDRRVV 241
>gi|296503066|ref|YP_003664766.1| beta-lactamase [Bacillus thuringiensis BMB171]
gi|296324118|gb|ADH07046.1| Beta-lactamase [Bacillus thuringiensis BMB171]
Length = 308
Score = 43.4 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 71 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVDYSPV 127
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + + K +K ++HM + T
Sbjct: 128 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNEIGGPKGYEKALRHMGDRITMSDRFETE 187
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 188 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 247
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 248 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 292
>gi|302552014|ref|ZP_07304356.1| penicillin-binding protein [Streptomyces viridochromogenes DSM
40736]
gi|302469632|gb|EFL32725.1| penicillin-binding protein [Streptomyces viridochromogenes DSM
40736]
Length = 557
Score = 43.4 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 30/221 (13%), Positives = 51/221 (23%), Gaps = 26/221 (11%)
Query: 18 PFLSIAETNKLP----YYTLLDTNTGHVIAENYP--------DHPWNPASLTKLMTAYVV 65
+ AE L+ +TG ++A P S K++T+ ++
Sbjct: 265 ALQAAAEKQVAKKAKSSVVLMRVSTGEILAAANASPGFNTAFQGSLAPGSTMKVITSSLL 324
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
A K D K +S N
Sbjct: 325 LEK---GLASPDKKHPCPKY--FTYGHWKFQNDDKFEIKDGTFKASFARSCNTA---FIS 376
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM 185
K + + LGL+ GV + A + M
Sbjct: 377 QAPKLKDDDLTKQAQQVFGLGLNNWAV----GVPSFDGAVPVQSAAQKGASLIGQGGVRM 432
Query: 186 HYFQIKGL--EIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
+ + + IK + G K T +S
Sbjct: 433 NPLNMASVSATIKSGTFHQPYLVSPDVDGRGLAKASRTMSS 473
>gi|219920993|emb|CAQ76674.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 43.4 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPEDHAPLVLVT 263
>gi|219920973|emb|CAQ76664.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 43.4 bits (100), Expect = 0.043, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGPAESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 263
>gi|219920989|emb|CAQ76672.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 43.4 bits (100), Expect = 0.044, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N A + L+ V
Sbjct: 233 VGDKTGAGDYGTTNDXAVIWPENHAPLVLVT 263
>gi|60416699|emb|CAI43414.1| beta-lactamase [Klebsiella oxytoca]
Length = 290
Score = 43.4 bits (100), Expect = 0.044, Method: Composition-based stats.
Identities = 39/238 (16%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFAHSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L D Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGDALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A D L+ V A +R +A +++ G
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPEDHAPLVLVTYFTQPQQDAKNRKEVLAAAAKIVTEGL 290
>gi|333029538|ref|ZP_08457599.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Bacteroides coprosuis DSM 18011]
gi|332740135|gb|EGJ70617.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Bacteroides coprosuis DSM 18011]
Length = 459
Score = 43.4 bits (100), Expect = 0.044, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ + + +I E+ + PAS KL+TA +
Sbjct: 41 VYNLSKDQLIYEHNANKLARPASTLKLLTAITALEYH 77
>gi|270311266|gb|ACZ72744.1| beta-lactamase [Burkholderia multivorans]
gi|270311268|gb|ACZ72745.1| beta-lactamase [Achromobacter denitrificans]
Length = 304
Score = 43.4 bits (100), Expect = 0.045, Method: Composition-based stats.
Identities = 39/254 (15%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFLSI---------AETNKLPYYT---LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F S A L +LDT G + +
Sbjct: 18 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSTRIGVSVLDTQNGE-YWDYNGNQR 76
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 77 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 136
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 137 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 196
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 197 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 256
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 257 TAVVWSEHQAPIIV 270
>gi|82655102|emb|CAJ19620.1| OKP-B beta-lactamase [Klebsiella pneumoniae]
Length = 286
Score = 43.4 bits (100), Expect = 0.045, Method: Composition-based stats.
Identities = 36/258 (13%), Positives = 63/258 (24%), Gaps = 21/258 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ +I L+ + + Y +D +G +A + S
Sbjct: 8 LISLITALPLAVFASPQPLEQIKISESQLAGRVGYVEMDLASGRTLATWRASERFPLMST 67
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 68 FKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 127
Query: 117 NDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N + F++ + + L T A T A L
Sbjct: 128 NSAGNLLLKIVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPASMATTLR 187
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
+ T Q+ + + AV KTG A +
Sbjct: 188 KLLTTPSLSARSQQQLLQWMVDDRVAGPLIRAVLPAGWFIADKTG------------AGE 235
Query: 235 GDQSLIAVILGALDRNTR 252
I +LG + R
Sbjct: 236 RGSRGIVALLGPDGKAER 253
>gi|269103417|ref|ZP_06156114.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163315|gb|EEZ41811.1| D-alanyl-D-alanine carboxypeptidase [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 464
Score = 43.4 bits (100), Expect = 0.046, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 9/68 (13%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPY--------YTLL-DTNTGHVIAENYPDHPWNPASLT 57
++ +++L+ P L+ L+ D TG +I + D+ PAS
Sbjct: 5 LLCVSLLATSLPTLAAFNPQAAIAKLPQGHDLALLIKDPATGKIIYQQRTDNLQAPASTQ 64
Query: 58 KLMTAYVV 65
K +TA
Sbjct: 65 KTITALAA 72
>gi|126659412|ref|ZP_01730546.1| D-alanyl-D-alanine carboxypeptidase [Cyanothece sp. CCY0110]
gi|126619248|gb|EAZ89983.1| D-alanyl-D-alanine carboxypeptidase [Cyanothece sp. CCY0110]
Length = 295
Score = 43.4 bits (100), Expect = 0.046, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 32 TLLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFS----FLKEKKAMLTTPITISK 84
L++ + G V+ + D + PAS K+ T K L + + ++
Sbjct: 83 ILVEKLDDGTVLYSHNADRHFIPASNNKIFTTAAALQLKTPQSKIGSKSLQSWVNVTN 140
>gi|219920935|emb|CAQ76645.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 43.4 bits (100), Expect = 0.047, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 59/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N I L EK F + + + + +L +
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFSLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A D L+ V
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPEDHAPLVLVT 263
>gi|110678570|ref|YP_681577.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter denitrificans OCh 114]
gi|109454686|gb|ABG30891.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter denitrificans OCh 114]
Length = 499
Score = 43.4 bits (100), Expect = 0.047, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + D TG ++ P+ PAS+TK +TA
Sbjct: 63 AFAVADAKTGEILEARAPELGIAPASVTKAITALYALD 100
>gi|154686280|ref|YP_001421441.1| hypothetical protein RBAM_018470 [Bacillus amyloliquefaciens
FZB42]
gi|42491141|emb|CAE11278.1| DacC protein [Bacillus amyloliquefaciens FZB42]
gi|154352131|gb|ABS74210.1| DacC [Bacillus amyloliquefaciens FZB42]
Length = 491
Score = 43.4 bits (100), Expect = 0.048, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
TG V+ + D PASL KL+TA
Sbjct: 62 AKTGEVLFGSREDMRLRPASLMKLLTASAAL 92
>gi|46358558|gb|AAS88588.1| ORN-5 beta-lactamase [Raoultella ornithinolytica]
Length = 291
Score = 43.4 bits (100), Expect = 0.048, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 70/232 (30%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G +++ + S K++ V S + + L I +
Sbjct: 45 LDLASGQLLSGYRAGERFPMMSTFKVLLCGAVLSRVDTGEEQLDRRIHYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ +T+ I S N A + ++ + F++H + + L T
Sbjct: 105 TEKHLADGLTVGELCAAAITLSDNTAANLLLTTIGGPQGLTTFLRHSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ ++ K +
Sbjct: 165 LNEARPGDVRDTTTPEAMARTLRNLLTGRVLSPASQQQLQRWMVEDKVAGPLLRSALPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVILGAL--DRNTRNKVSASL 259
KTG I+A+ + ++ + L A + RNK A++
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGKAARIVVIYLTATPASMDERNKQIAAI 276
>gi|221229313|gb|ABO61011.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 303
Score = 43.4 bits (100), Expect = 0.048, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 60/203 (29%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G I + D + S K M A S + A+L + + +
Sbjct: 62 LLDTASGRRI-GHRQDERFPMCSTFKSMLAATALSQAERMPALLDRRVPVGEADLLSHAP 120
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +T
Sbjct: 121 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEP 180
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + + Q Q+ I + A
Sbjct: 181 ELNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGK 240
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 241 RWRVGDKTGSNGEDARNDIAVLW 263
>gi|46358556|gb|AAS88587.1| ORN-4 beta-lactamase [Raoultella ornithinolytica]
Length = 291
Score = 43.4 bits (100), Expect = 0.048, Method: Composition-based stats.
Identities = 34/232 (14%), Positives = 69/232 (29%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G +++ + S K++ V S + + L I +
Sbjct: 45 LDLASGQLLSGYRAGERFPMMSTFKVLLCGAVLSRVDTGEEQLDRRIHYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ + + I S N A + +L + F++H + + L T
Sbjct: 105 TEKHLADGLNVGELCAAAITLSDNTAANLLLTTLGGPQGLTTFLRHSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ ++ K +
Sbjct: 165 LNEARPGDVRDTTTPEAMARTLRNLLTGRVLSPASQQQLQRWMVEDKVAGPLLRSALPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVILGAL--DRNTRNKVSASL 259
KTG I+A+ + ++ + L A + RNK A++
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGKAARIVVIYLTATPASMDERNKQIAAI 276
>gi|228908258|ref|ZP_04072103.1| Beta-lactamase [Bacillus thuringiensis IBL 200]
gi|228851299|gb|EEM96108.1| Beta-lactamase [Bacillus thuringiensis IBL 200]
Length = 312
Score = 43.4 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 57/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--TLNEVITFTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++ M + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRQMGDRITMSDRFETA 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|74474872|dbj|BAE44424.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
gi|74474874|dbj|BAE44425.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 289
Score = 43.4 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 38/203 (18%), Positives = 60/203 (29%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G I + D + S K M A V S + A+L + +
Sbjct: 51 LLDTASGRRI-GHRQDERFPMCSTFKSMLAATVLSQAERMPALLDRRVPVRDADLLSHAP 109
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +T
Sbjct: 110 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEP 169
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + + Q Q+ I + A
Sbjct: 170 ELNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGK 229
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 230 RWRVGDKTGSNGEDARNDIAVLW 252
>gi|260435239|ref|ZP_05789209.1| beta-lactamase family protein [Synechococcus sp. WH 8109]
gi|260413113|gb|EEX06409.1| beta-lactamase family protein [Synechococcus sp. WH 8109]
Length = 381
Score = 43.4 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 22/155 (14%), Positives = 53/155 (34%), Gaps = 6/155 (3%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ + Y L+ + G A + P AS K V L +
Sbjct: 112 LAAQQSDLQASAYMLI-LDDGRF-AAMQAERPMAAASSIKTPILLAVLELLDQGTLQWNE 169
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
P+T+++ + + + + +++ +++ A + + + +
Sbjct: 170 PLTLTEELVGGGAGWMASRPLGSRFPTHEVATEMIRVSDNSATNLMIA----RAGGMDAI 225
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAIL 173
N + L L +T N + + T+ARD++
Sbjct: 226 NARFQELDLPSTVVNNWLPDLDGTNTTSARDLSRA 260
>gi|85709563|ref|ZP_01040628.1| Beta-lactamase class A [Erythrobacter sp. NAP1]
gi|85688273|gb|EAQ28277.1| Beta-lactamase class A [Erythrobacter sp. NAP1]
Length = 340
Score = 43.4 bits (100), Expect = 0.050, Method: Composition-based stats.
Identities = 43/253 (16%), Positives = 85/253 (33%), Gaps = 27/253 (10%)
Query: 34 LDTNTGH---VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT--ISKNASE 88
LD TG V+ D + AS +K+ A +++ K LT+ I +++
Sbjct: 77 LDLATGESVAVL----GDQLFPMASTSKIAVAATYLEMVEQNKYSLTSEFPLLIPIRSAK 132
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDI--AVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ + ++G+ M + ++++I +S+N A+ A + +++ T ++
Sbjct: 133 FSSPAAPVRRGNYMPAIDLIEIMITRSSNPATDALLAAVGGPEKVNDWMRRQGITDFSID 192
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWR-------IKTDFPQYMHYFQIKGLEIKGKK 199
+ G ++ RD A + DF + G +
Sbjct: 193 RDIATLVRDDGEYDPANWIDPRDAATPRAMVRLLQGLYRGDFLSDQSRQVLLGAMSRTVT 252
Query: 200 YPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV---ILGALDRNTR---- 252
A KTG + +I IAV + G R R
Sbjct: 253 GRRRIPANMPDEAVVSHKTGSLNNTSSDIGIIESPDG-RAIAVAIYVTGQGTRRNREARI 311
Query: 253 NKVSASLLSMGFY 265
++ +L GF
Sbjct: 312 ASIARALYD-GFA 323
>gi|165869180|ref|ZP_02213840.1| beta-lactamase [Bacillus anthracis str. A0488]
gi|167632304|ref|ZP_02390631.1| beta-lactamase [Bacillus anthracis str. A0442]
gi|167637931|ref|ZP_02396210.1| beta-lactamase [Bacillus anthracis str. A0193]
gi|170685205|ref|ZP_02876429.1| beta-lactamase [Bacillus anthracis str. A0465]
gi|170704467|ref|ZP_02894933.1| beta-lactamase [Bacillus anthracis str. A0389]
gi|177649574|ref|ZP_02932576.1| beta-lactamase [Bacillus anthracis str. A0174]
gi|190565220|ref|ZP_03018140.1| beta-lactamase Bla1 [Bacillus anthracis Tsiankovskii-I]
gi|227814685|ref|YP_002814694.1| beta-lactamase Bla1 [Bacillus anthracis str. CDC 684]
gi|229600021|ref|YP_002866828.1| beta-lactamase Bla1 [Bacillus anthracis str. A0248]
gi|164715906|gb|EDR21423.1| beta-lactamase [Bacillus anthracis str. A0488]
gi|167514480|gb|EDR89847.1| beta-lactamase [Bacillus anthracis str. A0193]
gi|167532602|gb|EDR95238.1| beta-lactamase [Bacillus anthracis str. A0442]
gi|170130268|gb|EDS99129.1| beta-lactamase [Bacillus anthracis str. A0389]
gi|170670565|gb|EDT21304.1| beta-lactamase [Bacillus anthracis str. A0465]
gi|172084648|gb|EDT69706.1| beta-lactamase [Bacillus anthracis str. A0174]
gi|190563247|gb|EDV17212.1| beta-lactamase Bla1 [Bacillus anthracis Tsiankovskii-I]
gi|227002673|gb|ACP12416.1| beta-lactamase Bla1 [Bacillus anthracis str. CDC 684]
gi|229264429|gb|ACQ46066.1| beta-lactamase Bla1 [Bacillus anthracis str. A0248]
Length = 276
Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 39 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 95
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 96 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRQMGDRVTMSDRFETE 155
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 156 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTKWMKGNATGDKLIRAGVPTN 215
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 216 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYD 260
>gi|76781027|gb|ABA54433.1| beta-lactamase [Salmonella enterica subsp. enterica serovar Albany]
Length = 288
Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 78/254 (30%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 121 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 181 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 240
Query: 229 VASAIQGDQSLIAV 242
A + I V
Sbjct: 241 TAVVWSEHPAPIIV 254
>gi|111225918|ref|YP_716712.1| putative penicillin-binding protein 6 [Frankia alni ACN14a]
gi|111153450|emb|CAJ65208.1| conserved hypothetical protein; putative signal peptide; putative
Penicillin-binding protein 6 [Precursor]
(D-alanyl-D-alanine carboxypeptidase fraction C (dacC)
[Frankia alni ACN14a]
Length = 493
Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK--LMTAYVV 65
P ++D +TGHV+ ++ P PAS K + TA +V
Sbjct: 75 PVLAGPAAFVVDASTGHVLLDDRARTPAVPASTLKTAVATAALV 118
>gi|86160225|ref|YP_467010.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85776736|gb|ABC83573.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 737
Score = 43.4 bits (100), Expect = 0.051, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 15 NIFPFLSIAETNKLPYYTLLDT-NTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ + + L+ +TG VI PD NPAS KL+T+
Sbjct: 46 ALAAIVDGSPLAGARVGILVSAVDTGEVIYARDPDVLLNPASNVKLVTSAAAL 98
>gi|145596821|ref|YP_001161118.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Salinispora tropica CNB-440]
gi|145306158|gb|ABP56740.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Salinispora tropica CNB-440]
Length = 593
Score = 43.4 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ D +G ++ + PAS+TKL+TA V +
Sbjct: 207 VTDVASGAILYDQGAADGTVPASVTKLVTAATVLAARDPGH 247
>gi|30262502|ref|NP_844879.1| beta-lactamase [Bacillus anthracis str. Ames]
gi|47778058|ref|YP_019143.2| beta-lactamase [Bacillus anthracis str. 'Ames Ancestor']
gi|21433610|gb|AAK53749.2|AF367983_1 beta-lactamase I [Bacillus anthracis]
gi|30257134|gb|AAP26365.1| beta-lactamase Bla1 [Bacillus anthracis str. Ames]
gi|38427155|gb|AAR20595.1| beta-lactamase I [Bacillus anthracis]
gi|47551763|gb|AAT31618.2| beta-lactamase [Bacillus anthracis str. 'Ames Ancestor']
Length = 309
Score = 43.4 bits (100), Expect = 0.052, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 72 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 128
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 129 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRQMGDRVTMSDRFETE 188
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 189 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTKWMKGNATGDKLIRAGVPTN 248
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 249 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYD 293
>gi|49477729|ref|YP_036617.1| beta-lactamase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|49329285|gb|AAT59931.1| beta-lactamase [Bacillus thuringiensis serovar konkukian str.
97-27]
Length = 312
Score = 43.4 bits (100), Expect = 0.053, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 75 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 132 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRKMGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTEWMKGNATGDKLIRAGVPTN 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 252 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYD 296
>gi|6137620|pdb|1BUE|A Chain A, Nmc-A Carbapenemase From Enterobacter Cloacae
gi|157830473|pdb|1BUL|A Chain A, 6alpha-(Hydroxypropyl)penicillanate Acylated On Nmc-A
Beta- Lactamase From Enterobacter Cloacae
Length = 265
Score = 43.4 bits (100), Expect = 0.053, Method: Composition-based stats.
Identities = 31/223 (13%), Positives = 57/223 (25%), Gaps = 6/223 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LDT +G + + S K A V ++ + L + + + E+
Sbjct: 24 LDTGSGKS-FSYRANERFPLCSSFKGFLAAAVLKGSQDNRLNLNQIVNYNTRSLEFHSPI 82
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN---NTSKNLGLSAT 150
+T K + M+L + + S N I E + + M + L
Sbjct: 83 TTKYKDNGMSLGDMAAAALQYSDNGATNIILERYIGGPEGMTKFMRSIGDEDFRLDRWEL 142
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
A + T A L + + A
Sbjct: 143 DLNTAIPGDERDTSTPAAVAKSLKTLALGNILSEHEKETYQTWLKGNTTGAARIRASVPS 202
Query: 211 LGADGMKTGF--TCASGFNIVASAIQGDQSLIAVILGALDRNT 251
G KTG + + + LI + +
Sbjct: 203 DWVVGDKTGSCGAYGTANDYAVVWPKNRAPLIISVYTTKNEKE 245
>gi|46277644|gb|AAS87024.1| beta-lactamase ORN-2 [Raoultella ornithinolytica]
Length = 291
Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G +++ + S K++ V S + + L I +
Sbjct: 45 LDLASGQLLSGYRAGERFPMMSTFKVLLCGAVLSRVDTGEEQLDRRIHYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ +T+ I S N A + +L + F++H + + L T
Sbjct: 105 TEKHLADGLTVGELCAAAITLSDNTAANLLLTTLGGPQGLTTFLRHSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ ++ K +
Sbjct: 165 LNEARPGDVRDTTTPEAMARTLRNLLTGRVLSPASQQQLQRWMVEDKVAGPLLRSALPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVILGAL--DRNTRNKVSASL 259
KTG I+A+ + ++ + L A + RNK A++
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGKAARIVVIYLTATPASMDERNKQIAAI 276
>gi|32307193|gb|AAP79050.1| beta-lactamase [Raoultella ornithinolytica]
gi|32307195|gb|AAP79051.1| beta-lactamase [Raoultella ornithinolytica]
gi|46358562|gb|AAS88590.1| ORN-1 beta-lactamase [Raoultella ornithinolytica]
gi|46358564|gb|AAS88591.1| ORN-1 beta-lactamase [Raoultella ornithinolytica]
gi|46358566|gb|AAS88592.1| ORN-1 beta-lactamase [Raoultella ornithinolytica]
gi|46358568|gb|AAS88593.1| ORN-1 beta-lactamase [Raoultella ornithinolytica]
gi|46358570|gb|AAS88594.1| ORN-1 beta-lactamase [Raoultella ornithinolytica]
gi|46358572|gb|AAS88595.1| ORN-1 beta-lactamase [Raoultella ornithinolytica]
gi|46358574|gb|AAS88596.1| ORN-1 beta-lactamase [Raoultella ornithinolytica]
gi|46358576|gb|AAS88597.1| ORN-1 beta-lactamase [Raoultella ornithinolytica]
gi|46358578|gb|AAS88598.1| ORN-1 beta-lactamase [Raoultella ornithinolytica]
gi|46358580|gb|AAS88599.1| ORN-1 beta-lactamase [Raoultella ornithinolytica]
gi|46358582|gb|AAS88600.1| ORN-1 beta-lactamase [Raoultella ornithinolytica]
gi|46358584|gb|AAS88601.1| ORN-1 beta-lactamase [Raoultella ornithinolytica]
gi|82408913|gb|ABB73250.1| beta-lactamase ORN-1 [Raoultella ornithinolytica]
Length = 291
Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G +++ + S K++ V S + + L I +
Sbjct: 45 LDLASGQLLSGYRAGERFPMMSTFKVLLCGAVLSRVDTGEEQLDRRIHYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ +T+ I S N A + +L + F++H + + L T
Sbjct: 105 TEKHLADGLTVGELCAAAITLSDNTAANLLLTTLGGPQGLTTFLRHSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ ++ K +
Sbjct: 165 LNEARPGDVRDTTTPEAMARTLRNLLTGRVLSPASQQQLQRWMVEDKVAGPLLRSALPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVILGAL--DRNTRNKVSASL 259
KTG I+A+ + ++ + L A + RNK A++
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGKAARIVVIYLTATPASMDERNKQIAAI 276
>gi|298252659|ref|ZP_06976453.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[Gardnerella vaginalis 5-1]
gi|297533023|gb|EFH71907.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[Gardnerella vaginalis 5-1]
Length = 596
Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++D N G V+A + P+ PAS K +TA V L
Sbjct: 162 AVIMDAN-GRVVASHEPNALREPASTLKTLTASVASRTLDMG 202
>gi|297243771|ref|ZP_06927701.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[Gardnerella vaginalis AMD]
gi|296888192|gb|EFH26934.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[Gardnerella vaginalis AMD]
Length = 534
Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++D N G V+A + P+ PAS K +TA V L
Sbjct: 100 AVIMDAN-GRVVASHEPNALREPASTLKTLTASVASRTLDMG 140
>gi|283783580|ref|YP_003374334.1| putative D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Gardnerella vaginalis 409-05]
gi|283441821|gb|ADB14287.1| putative D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Gardnerella vaginalis 409-05]
Length = 596
Score = 43.4 bits (100), Expect = 0.054, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
++D N G V+A + P+ PAS K +TA V L
Sbjct: 162 AVIMDAN-GRVVASHEPNALREPASTLKTLTASVASRTLDMG 202
>gi|315446259|ref|YP_004079138.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Mycobacterium sp. Spyr1]
gi|315264562|gb|ADU01304.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Mycobacterium sp. Spyr1]
Length = 459
Score = 43.0 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D TG + D P PAS KL+TA
Sbjct: 91 ITDALTGKQLWAQGADVPMQPASTNKLLTAAAAL 124
>gi|580754|emb|CAA29819.1| unnamed protein product [Bacillus cereus]
Length = 306
Score = 43.0 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I P+ + AS K + A V+ L IT +K
Sbjct: 69 IDTGTNQTI-SYRPNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVDYSPV 125
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++HM + T
Sbjct: 126 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSNRFETE 185
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 186 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGIPTD 245
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 246 WVVGDKSGAGSYGTRNDIAVVWPPNRAPIIIAILSSKDEKEAIYD 290
>gi|145222001|ref|YP_001132679.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Mycobacterium gilvum PYR-GCK]
gi|145214487|gb|ABP43891.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Mycobacterium gilvum PYR-GCK]
Length = 459
Score = 43.0 bits (99), Expect = 0.055, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D TG + D P PAS KL+TA
Sbjct: 91 ITDALTGKQLWAQGADVPMQPASTNKLLTAAAAL 124
>gi|281425418|ref|ZP_06256331.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella oris F0302]
gi|281400411|gb|EFB31242.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella oris F0302]
Length = 420
Score = 43.0 bits (99), Expect = 0.056, Method: Composition-based stats.
Identities = 28/257 (10%), Positives = 58/257 (22%), Gaps = 24/257 (9%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ D + I PAS KL+TA L T K +
Sbjct: 78 MIYDLDADSTIFAFNEHQLMRPASTMKLVTAITAIDRLGGDYQFKTELCYTGKIENNKLV 137
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ G + V++ + V E ++ + +
Sbjct: 138 GDIYCVGGFDPRFNTDDLNAFVEAIRKMGVDTIEGH-LYADLSMKDTKQYGEGWCWDDKN 196
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--------KGLEIKGKKYPNT 203
+ + AR + L + + I
Sbjct: 197 PVLTPLLFSGKDIFMARFLDALVAHGIYVDANIDEKRKPADAFCIVNRFHTIDQILMRML 256
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA------ 257
+ + A + + + SA ++ L+ I G + +
Sbjct: 257 KESNNLYAEAMYYQIAASTGNHPASARSARAVERRLVDKI-GLDASRYKFADGSGLSLYN 315
Query: 258 --------SLLSMGFYN 266
+L + N
Sbjct: 316 YVSAELEVKMLRYAYKN 332
>gi|46358560|gb|AAS88589.1| ORN-6 beta-lactamase [Raoultella ornithinolytica]
Length = 291
Score = 43.0 bits (99), Expect = 0.056, Method: Composition-based stats.
Identities = 36/232 (15%), Positives = 71/232 (30%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G +++ + S K++ V S + + L I +
Sbjct: 45 LDLASGQLLSGYRAGERFPMMSTFKVLLCGAVLSRVDTGEEQLDRRIHYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ +T+ I S N A + +L + F++H + + L T
Sbjct: 105 TEKHLADGLTVGELCAAAITLSDNTAANLLLTTLGGPQGLTTFLRHSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T IL + Q++ ++ K +
Sbjct: 165 LNEARPGDVRDTTTPEAMARILRNLLTGRVLSPASQQQLQRWMVEDKVAGPLLRSALPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVILGAL--DRNTRNKVSASL 259
KTG I+A+ + ++ + L A + RNK A++
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGKAARIVVIYLTATPASMDERNKQIAAI 276
>gi|254469344|ref|ZP_05082749.1| beta-lactamase [Pseudovibrio sp. JE062]
gi|211961179|gb|EEA96374.1| beta-lactamase [Pseudovibrio sp. JE062]
Length = 295
Score = 43.0 bits (99), Expect = 0.056, Method: Composition-based stats.
Identities = 25/203 (12%), Positives = 58/203 (28%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
E+ D + AS K + V + + + L + SK + M
Sbjct: 63 ESRADERFPMASTFKALLCGAVLARVDRGEERLGEVVAYSKAELVSYSPVTKKHVAEGMR 122
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + + S N A + + + + +F++ + + L A
Sbjct: 123 VGELCEATVTMSDNTAANLLLKRVDGPKGLTRFLRGLGDRVTRLDRREPEMNEAKPGDAR 182
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+ + L + + Q Q++ + K K+G
Sbjct: 183 DTTSPRAVVQTLDRLLFEEVLQPSSRAQLQQWMVDDKVADALIRKHLPSDWRIADKSGAG 242
Query: 222 CASGFNIVASAIQG-DQSLIAVI 243
I+A+ + +A +
Sbjct: 243 HNGSRGIIAAIWPETGEPYLAAV 265
>gi|84782649|gb|ABC61673.1| beta-lactamase CTX-M-14 [Klebsiella pneumoniae]
Length = 212
Score = 43.0 bits (99), Expect = 0.056, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 15/134 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTL------------LD-TNTGHVIAENYPDHP 50
F + +L P + + L +D + V+ D
Sbjct: 11 FAAAACIPLLLGSAPLYAQTSAVQQKLAALEKSSGGRLGVALIDTADNTQVLY--RGDER 68
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S +K+M A V + +K +L P+ I + TMTL
Sbjct: 69 FPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAEKHVNGTMTLAELSAA 128
Query: 111 LIVKSANDIAVAIA 124
+ S N +
Sbjct: 129 ALQYSDNTAMNKLI 142
>gi|314982852|gb|EFT26944.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL110PA3]
gi|315091170|gb|EFT63146.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL110PA4]
Length = 364
Score = 43.0 bits (99), Expect = 0.057, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+D TG + ++ + PAS K++TA +
Sbjct: 1 MDAATGETLYQSGQNSLLTPASNLKVLTAIALLDCTDAGH 40
>gi|298386969|ref|ZP_06996523.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 1_1_14]
gi|298260119|gb|EFI02989.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 1_1_14]
Length = 468
Score = 43.0 bits (99), Expect = 0.057, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 13/79 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-------------LLDTNTGHVIAENYP 47
M+++L+ + +++ A +++ + D +
Sbjct: 1 MKKYLLFLVLSVALLPASVWGQANLSQIDSLIKRMLPEASEVGISVYDLTAKKSLYTYRD 60
Query: 48 DHPWNPASLTKLMTAYVVF 66
PAS KL+TA
Sbjct: 61 TKLSRPASTMKLLTAITAL 79
>gi|210630517|ref|ZP_03296494.1| hypothetical protein COLSTE_00379 [Collinsella stercoris DSM 13279]
gi|210160430|gb|EEA91401.1| hypothetical protein COLSTE_00379 [Collinsella stercoris DSM 13279]
Length = 353
Score = 43.0 bits (99), Expect = 0.057, Method: Composition-based stats.
Identities = 33/245 (13%), Positives = 74/245 (30%), Gaps = 23/245 (9%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK-LMTAYVVFSFLKEK 72
+++ L+ E +D TG + PD AS K L + YV S +++
Sbjct: 98 ASVESALAAIEEQGSVSMVFVDAQTGSGL-AYQPDLVVYGASSFKALYSMYVCESLVEKG 156
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ L + + +S G + + ++ ++ S N+ A+ ++
Sbjct: 157 EVSLDDYCAV-----NWVADSSGGYSGGSYPVYELIEAAVIYSNNNAYGALRDAFD---- 207
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
+ ++ LG + + + ++AR L + Q
Sbjct: 208 --FEGFDDWVTGLGANDAVYREDSWFPTYAARSSAR----LWSEMLAYVGGGSETAQWLW 261
Query: 193 LEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVA-----SAIQGDQSLIAVIL-GA 246
+ K G+ S + + ++ I I+ G
Sbjct: 262 DLTGQTTVSFIRDGLEGLDAVVHNKAGWCSDSDPSYNSVSDAGVVDLDGRTYIMSIMTGM 321
Query: 247 LDRNT 251
D +
Sbjct: 322 PDTES 326
>gi|1345608|sp|P80545|BLAC_SERFO RecName: Full=Beta-lactamase; AltName: Full=Penicillinase;
Contains: RecName: Full=Beta-lactamase form I; Contains:
RecName: Full=Beta-lactamase form II
Length = 267
Score = 43.0 bits (99), Expect = 0.057, Method: Composition-based stats.
Identities = 36/230 (15%), Positives = 64/230 (27%), Gaps = 8/230 (3%)
Query: 33 LLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+D + ++ D + S +K+M + + K +L + I ++
Sbjct: 28 LIDTADNSQILY--RGDERFPMCSTSKVMAVSALLKQSETDKNLLAKRMEIKQSDLVNYN 85
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL I S N I E L K K L T
Sbjct: 86 PIAEKHLDTGMTLAEFSAATIQYSDNTAMNKILEHLGGPAKVTEFARTIGDKTFRLDRTE 145
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ TT+ +S + T + + +E
Sbjct: 146 PTLNTAIPGDKRDTTSPQAMAISLQNLTLGKALAEPQRAQLVEWMKGNTTGGASIRAGLP 205
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSAS 258
G KTG N +A + L+ V + +N +
Sbjct: 206 TTWVVGDKTGSGDYGTTNDIAVIWPANHAPLVLVT--YFTQPQQNAEARK 253
>gi|299536860|ref|ZP_07050167.1| beta-lactamase [Lysinibacillus fusiformis ZC1]
gi|298727684|gb|EFI68252.1| beta-lactamase [Lysinibacillus fusiformis ZC1]
Length = 270
Score = 43.0 bits (99), Expect = 0.058, Method: Composition-based stats.
Identities = 34/190 (17%), Positives = 72/190 (37%), Gaps = 12/190 (6%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
+ T ++ + + ++ ASL K+ + S++++ K L + +TIS S
Sbjct: 22 NLTTNQLLISHQLEASFSSASLIKVPILLALLSYIEKNKLSLDSTLTISPT-DWVDFSVI 80
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
+ ++ + T L +I+ S N + + + +N+ +++GL T
Sbjct: 81 SEQRLTQSTFYELLVWMIITSDNTATNVLIDVVGMAY------LNDYFQHIGLQDTLLQR 134
Query: 155 AHGVVQH-----GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
V + T+ARDMA L I Y ++ + ++ ++
Sbjct: 135 KMMDVDRLAKGIDNRTSARDMAHLYTCIYQQELLSPPYNKLVIDILSRQRVHDSLKRYLI 194
Query: 210 FLGADGMKTG 219
KTG
Sbjct: 195 EDVRLAHKTG 204
>gi|229109941|ref|ZP_04239522.1| Beta-lactamase [Bacillus cereus Rock1-15]
gi|228673508|gb|EEL28771.1| Beta-lactamase [Bacillus cereus Rock1-15]
Length = 312
Score = 43.0 bits (99), Expect = 0.058, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++HM + T
Sbjct: 132 TEKHVDTGMKLGEIAEASVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|229145119|ref|ZP_04273511.1| Beta-lactamase [Bacillus cereus BDRD-ST24]
gi|228638317|gb|EEK94755.1| Beta-lactamase [Bacillus cereus BDRD-ST24]
Length = 312
Score = 43.0 bits (99), Expect = 0.058, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + + K +K ++HM + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNEIGGPKGYEKALRHMGDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|224460107|gb|ACN43604.1| extended-spectrum beta-lactamase CTX-M-2 [Pseudomonas aeruginosa]
Length = 242
Score = 43.0 bits (99), Expect = 0.058, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 4/186 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 47 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 104
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 105 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 164
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 165 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWV 224
Query: 214 DGMKTG 219
G KTG
Sbjct: 225 VGDKTG 230
>gi|83645112|ref|YP_433547.1| beta-lactamase class A [Hahella chejuensis KCTC 2396]
gi|83633155|gb|ABC29122.1| Beta-lactamase class A [Hahella chejuensis KCTC 2396]
Length = 299
Score = 43.0 bits (99), Expect = 0.058, Method: Composition-based stats.
Identities = 33/229 (14%), Positives = 67/229 (29%), Gaps = 4/229 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASE 88
+LDT TG + S K++ + + + + L + I ++
Sbjct: 54 GVMVLDTQTGRT-WGQRGQERFPLCSTFKVLACAALLAKVDAGEENLERRVPIHARDIVT 112
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLG 146
Y P G MTL + + KS N A + +++ ++++ + + + L
Sbjct: 113 YSPVTKDRIGGEGMTLRELCQAAMTKSDNTAANLVLKAVGGPPRLTEYLRGLGDETTRLD 172
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
T A + A + L Q+ + + A
Sbjct: 173 RWETELNEATPGDPRDTTSPAAMASTLQTLFLNSPLSRASRQQLTAWFLANETGDAKLRA 232
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
G +TG N VA + + V + +
Sbjct: 233 GLPQDWRIGDRTGGGAYGSTNDVAVIWPPGREPLIVTVYITETEAAFDD 281
>gi|37521956|ref|NP_925333.1| hypothetical protein glr2387 [Gloeobacter violaceus PCC 7421]
gi|35212955|dbj|BAC90328.1| glr2387 [Gloeobacter violaceus PCC 7421]
Length = 417
Score = 43.0 bits (99), Expect = 0.058, Method: Composition-based stats.
Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 9/226 (3%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ ++ +G +A ++ AS+ K+ + + L + + +
Sbjct: 170 SGFMFVEPASGRYVAMADG-ESFSAASVIKVPVLVEFLRQVDSGRLKLDDTLILRQEHKG 228
Query: 89 YPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ M+ N +L+IV+S N I + + ++N GL
Sbjct: 229 GGSGWMQYMPNGKRMSAYNVARLMIVRSDNTATNMIIDLV-----GGADYLNAQFGRWGL 283
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
T ++ + T+ DMA L + KG E+ G+ + V
Sbjct: 284 RTTRINAPLPDLEGTNTTSPADMA-LLLTELERGRLVTTQMRAKGYELMGRTRTGSLLPV 342
Query: 208 GTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
G GA + KTG + + + +AV L N R
Sbjct: 343 GLGPGAKILHKTGDIGKMVGDAAVVTMPDGRRYVAVALVERPHNDR 388
>gi|326798494|ref|YP_004316313.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Sphingobacterium sp. 21]
gi|326549258|gb|ADZ77643.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Sphingobacterium sp. 21]
Length = 477
Score = 43.0 bits (99), Expect = 0.059, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 14/80 (17%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLDTNTGHVIAENY 46
+R +L++I ++ + + + N T+LD TG VI
Sbjct: 9 IRFWLILIVFSLTTQSYAQSLEQKINIAYQQFESNPNLKYGTASLTVLDAKTGSVIFSKN 68
Query: 47 PDHPWNPASLTKLMTAYVVF 66
+ AS K +T+ F
Sbjct: 69 GNTGLATASTLKTITSAAAF 88
>gi|221229316|gb|ABO61012.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 301
Score = 43.0 bits (99), Expect = 0.059, Method: Composition-based stats.
Identities = 31/213 (14%), Positives = 57/213 (26%), Gaps = 2/213 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K + V S + L T + I+
Sbjct: 59 VLNTGNGRRIGGHRQDERFPMCSTFKSLLVAHVLSLADAGRVSLDTRVPIAGKDLLSYAP 118
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 119 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSITRNDRNEP 178
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A L+ + Q Q I + A
Sbjct: 179 DVNLFVKGDPRDTTSPAAMATSLARFAVGNGLQPASRQQFADWLIDNQTGDACLRAGLGT 238
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
G KTG N +A V+
Sbjct: 239 RWRVGDKTGSNGDDTRNDIAVLWPHGGGTAWVV 271
>gi|303233197|ref|ZP_07319870.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
gi|302480782|gb|EFL43869.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
Length = 434
Score = 43.0 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 10/226 (4%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+A +++ TG + + AS+ KL +
Sbjct: 191 QVVAPYGNAVSVSVVAIRTGAT-CDINANKQVISASMIKLAVMAAYLQAVDAGTINPQQA 249
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ +++ ++ T T D + +I+ S N A+ + V +N
Sbjct: 250 LPLARIKIVGGTGKIQSERARTYTYDALCRYMIMYSDNTATNALI------DDLGVDAVN 303
Query: 140 NTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKK 199
+ ++ LG + T + G + Q +
Sbjct: 304 SRARELGCTHTTLNRKLMQLNTGVENYTSAADVSRLLCAFYTQTAASAGQCTKAMDFLLQ 363
Query: 200 YPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ + G KTG + + V++
Sbjct: 364 QTDGDGIPQGLSGVQFAHKTGTLSGIRHDGGIVMERS--PYTIVVM 407
>gi|325287404|ref|YP_004263194.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cellulophaga lytica
DSM 7489]
gi|324322858|gb|ADY30323.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cellulophaga lytica
DSM 7489]
Length = 431
Score = 43.0 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D + I E + PAS TK+ T Y
Sbjct: 55 VYDPVSNKTIFEKNSTKYFTPASNTKIFTLYTALK 89
>gi|297570851|ref|YP_003696625.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Arcanobacterium
haemolyticum DSM 20595]
gi|296931198|gb|ADH92006.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Arcanobacterium
haemolyticum DSM 20595]
Length = 453
Score = 43.0 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 17/108 (15%), Positives = 36/108 (33%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
Y ++D +G +A + PAS K +TA + L + T+ + ++
Sbjct: 87 SSYAVIDPLSGKTVASHNEAKSLRPASTLKYVTAVAALTTLGPNATLDTSVTRVGRDVYL 146
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
+ G A + + A +A + ++ V
Sbjct: 147 VGGGDVMLAAGDGQPSAVAGRSGLADMARQVAQKLQKAKVSEITVHVD 194
>gi|108804547|ref|YP_644484.1| beta-lactamase [Rubrobacter xylanophilus DSM 9941]
gi|108765790|gb|ABG04672.1| beta-lactamase [Rubrobacter xylanophilus DSM 9941]
Length = 576
Score = 43.0 bits (99), Expect = 0.060, Method: Composition-based stats.
Identities = 30/215 (13%), Positives = 68/215 (31%), Gaps = 11/215 (5%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D +G PD + AS K+ V+ + + + + I ++
Sbjct: 312 DLKSGAG-YGVRPDQVFFSASTIKVPVMIAVYRRIDQGRLHYSDRIVTTEEDWAAGAGWL 370
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM- 153
++ + L++ ++++A L ++N +++LG T
Sbjct: 371 RWQTPGARSTVEDALWLMIAQSDNVATNALVRLV----GGPGYVNEVARSLGAEDTALHW 426
Query: 154 ----NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
V + TT RDMA+L +I++ + + ++ G
Sbjct: 427 KLSSERAAVPSLDNRTTPRDMALLLAKIRSGEAASRYACREMLGLLEQNNLEWWI-EGGV 485
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
G G S +N ++ + +
Sbjct: 486 PPGVKVANKGGWLDSTYNDAGIVEYEERPYVLAVF 520
>gi|256826251|ref|YP_003150211.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[Kytococcus sedentarius DSM 20547]
gi|256689644|gb|ACV07446.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[Kytococcus sedentarius DSM 20547]
Length = 536
Score = 43.0 bits (99), Expect = 0.061, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLM-TAYVV 65
D TG V+ + + P + AS+TKL+ TA VV
Sbjct: 152 DAATGEVLLQQNAERPNHLASMTKLVSTAAVV 183
>gi|118586937|ref|ZP_01544370.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni ATCC BAA-1163]
gi|118432664|gb|EAV39397.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni ATCC BAA-1163]
Length = 264
Score = 43.0 bits (99), Expect = 0.062, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 78/214 (36%), Gaps = 7/214 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ N G +I++ + + L++L+ Y V S ++ KK L TP+ +S+ S
Sbjct: 8 AQSSLFAELN-GKIISKKNVRKTFPISDLSRLVLIYEVLSAIRSKKISLDTPLIVSEKIS 66
Query: 88 EYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + F+ G T+ A+++L++ S A + E + +K+ K
Sbjct: 67 LFSKKDRSAAMHFQIGEFFTVKQAIEILLIMSEKSAAYLLIEKIFGNLEKWRSETARFLK 126
Query: 144 NLGLSA--THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ + + +A + + ++ DFP+ + Q K + +
Sbjct: 127 QEKIDGLIYEPVGLMSGEGRENLLSAISILKVINKLVNDFPKILAMTQKKQFIFQSDRQV 186
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
+ ++ A + ++ I
Sbjct: 187 QFYRNPSFKQRINNLQISAFFAEKYQKSSNFISD 220
>gi|42781600|ref|NP_978847.1| beta-lactamase [Bacillus cereus ATCC 10987]
gi|42737523|gb|AAS41455.1| beta-lactamase [Bacillus cereus ATCC 10987]
Length = 301
Score = 43.0 bits (99), Expect = 0.062, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ L I +K
Sbjct: 64 IDTGTNETIAYR-PNERFAFASTYKALAAGVLLQQNSID--TLNEVIKFTKEDLVDYSPI 120
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 121 TEKHIDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRQMGDRVTMSDRFETE 180
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 181 LNEAIPGDIRDTSTAKAIATNLKDFTVGNALPDDKRKVLTDWMKGNATGDKLIRAGVPTD 240
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 241 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEAIYD 285
>gi|29832334|ref|NP_826968.1| beta-lactamase [Streptomyces avermitilis MA-4680]
gi|29609453|dbj|BAC73503.1| putative beta-lactamase [Streptomyces avermitilis MA-4680]
Length = 276
Score = 43.0 bits (99), Expect = 0.063, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 12 MLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYP-DHPWNPASLTKLMTAYVVFSFL 69
M + + + D G V+A + P DH + AS+TK + AY V
Sbjct: 1 MSLQSLALIENWPVSTAAAAVVRAD---GTVLAAHGPVDHRFPLASVTKPLAAYAVLVAY 57
Query: 70 KEKKAMLTTP 79
+E L P
Sbjct: 58 EEGAVELDEP 67
>gi|33865252|ref|NP_896811.1| beta-lactamase family protein [Synechococcus sp. WH 8102]
gi|33632421|emb|CAE07233.1| possible beta-lactamase family protein [Synechococcus sp. WH 8102]
Length = 380
Score = 43.0 bits (99), Expect = 0.063, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 6/155 (3%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ + + Y L+ + G A+ + D P AS K +
Sbjct: 100 TIAATQKDLQTSAYMLI-LDDGRF-AQMHADRPMPAASSIKTPILLAALQQVDAGDLHWN 157
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
P+ ++K + + +++ +++ A + Q
Sbjct: 158 EPLVLTKELVGGGAGWMASRPLGSRFPTRVAATEMIRVSDNSATNLL----IERVGGQQT 213
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
+N +LGL AT N + + T+A D++
Sbjct: 214 INQRFDDLGLRATEVNNWLPDLDGTNTTSAHDLSR 248
>gi|269796488|ref|YP_003315943.1| D-alanyl-D-alanine carboxypeptidase [Sanguibacter keddieii DSM
10542]
gi|269098673|gb|ACZ23109.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Sanguibacter keddieii DSM 10542]
Length = 469
Score = 43.0 bits (99), Expect = 0.064, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ + + L+ + D TG V+ P P PAS+ K+ TA
Sbjct: 78 LQAAVDALLADPAMGTSVGVVVSDALTGEVLVSATPGTPRVPASIQKIFTAAAAL 132
>gi|258626438|ref|ZP_05721283.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio mimicus VM603]
gi|258581281|gb|EEW06185.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio mimicus VM603]
Length = 481
Score = 43.0 bits (99), Expect = 0.064, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNK-----LPYYTLL-DTNTGHVIAENYPDHPWNPAS 55
R L+ + +S+++ + Y ++ DT + E + PAS
Sbjct: 8 RWLLLFFGLLCVSSVYAESLVNSAINKLPAGSRYALMVEDTVSKQTTLELNTHLYYPPAS 67
Query: 56 LTKLMTAYVV 65
K++TA
Sbjct: 68 TQKILTALAA 77
>gi|51892073|ref|YP_074764.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
gi|51855762|dbj|BAD39920.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
Length = 407
Score = 43.0 bits (99), Expect = 0.064, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+D TG E P+ PAS KL A V + + T +T ++ E
Sbjct: 175 SVVAVDLTTGSR-YEFRARDPYLPASTFKLPVALCVLEAIDAGEMAWNTLVTYTEEDYEP 233
Query: 90 PP 91
Sbjct: 234 VG 235
>gi|152979121|ref|YP_001344750.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Actinobacillus
succinogenes 130Z]
gi|150840844|gb|ABR74815.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus succinogenes 130Z]
Length = 475
Score = 43.0 bits (99), Expect = 0.064, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASL 56
++ L+ + + A + + ++G +IA+ PAS
Sbjct: 6 KKILISTFFFVGTASAQVDVQALSKELPQGASLGFVAKNLHSGEIIADYNASTFMLPAST 65
Query: 57 TKLMTAYVV 65
K TA
Sbjct: 66 QKTFTALAA 74
>gi|229044232|ref|ZP_04191906.1| Beta-lactamase [Bacillus cereus AH676]
gi|228725103|gb|EEL76386.1| Beta-lactamase [Bacillus cereus AH676]
Length = 312
Score = 43.0 bits (99), Expect = 0.064, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++HM + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|325528473|gb|EGD05596.1| Beta-lactamase [Burkholderia sp. TJI49]
Length = 269
Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 27/235 (11%), Positives = 57/235 (24%), Gaps = 20/235 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAEN-YPDHPWNPASLTKL 59
M+ + + + + + A T + D TG V+ + PAS K+
Sbjct: 1 MKHWRHALFVVTAGLLTTAAAQARTLCT---VVADAATGRVLVQQGDCATRVTPASTFKV 57
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ + F +L T + + P +KL I + +
Sbjct: 58 AISLMGFDA-----GVLKDEHTPTLDFHAGYPDWGGAPWREPTDPARWMKLSIFWYSEQV 112
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ ++ + G + G + +S +
Sbjct: 113 TQALGQA----------RFQQYTNAFGYGNADVTSRQGELSGVMGAWVNSSLQISPLEQV 162
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAI 233
F + + + KTG + A
Sbjct: 163 GFMRRIANRTLPVSAHAYDMTERITLIDRQPDGWIVHGKTGTGSPGARYDASHAY 217
>gi|325105570|ref|YP_004275224.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Pedobacter saltans
DSM 12145]
gi|324974418|gb|ADY53402.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Pedobacter saltans
DSM 12145]
Length = 427
Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 16/79 (20%)
Query: 1 MRQFLVIIAMAMLSNIFPFL-----SIAETNKLP-----------YYTLLDTNTGHVIAE 44
M ++L +I +A+ F + + L D + + + E
Sbjct: 1 MNRYLSLIFLALFLTNPSFSQKKKKASEVNLLAQKIEETEGEFLSGFILKDLESNNTVYE 60
Query: 45 NYPDHPWNPASLTKLMTAY 63
+ + S TK++T
Sbjct: 61 RNANKKFVLGSNTKVLTLL 79
>gi|134133925|gb|ABO61020.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 298
Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 60/203 (29%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G I + D + S K M A S + A+L + + +
Sbjct: 57 LLDTASGRRI-GHRQDERFPMCSTFKSMLAATALSQAERMPALLDRRVPVGEADLLSHAL 115
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +T
Sbjct: 116 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEP 175
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + + Q Q+ I + A
Sbjct: 176 ELNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGK 235
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 236 RWRVGDKTGSNGEDARNDIAVLW 258
>gi|229193919|ref|ZP_04320832.1| Beta-lactamase [Bacillus cereus ATCC 10876]
gi|228589560|gb|EEK47466.1| Beta-lactamase [Bacillus cereus ATCC 10876]
Length = 312
Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I P+ + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRPNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++HM + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSNRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGIPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAVVWPPNRAPIIIAILSSKDEKEAIYD 296
>gi|238502021|ref|XP_002382244.1| penicillin-binding protein, putative [Aspergillus flavus NRRL3357]
gi|220691054|gb|EED47402.1| penicillin-binding protein, putative [Aspergillus flavus NRRL3357]
Length = 394
Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 18/166 (10%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTN-TGHVIAENYP---------------DHPWNP 53
M+ + + ++P ++ + +G +I D +
Sbjct: 1 MSFTEALKAATAPGPDQRIPGVVVMAADASGKIIFSEAEGQTSIDTDVAKPMTTDTTFWI 60
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
AS TKL+T +++ L P+ + P + F S L A K + +
Sbjct: 61 ASCTKLITTVAALQCVEKGILQLDDPVYKVLPEWKTPEILTGFDDLSEPQLKLATKKITL 120
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ + + ++LG S +N +
Sbjct: 121 RQL--LTHSSGMGYDFLSPDLASWRRWKGQSLGASEEPIINRLALP 164
>gi|30020602|ref|NP_832233.1| Beta-lactamase [Bacillus cereus ATCC 14579]
gi|229130884|ref|ZP_04259815.1| Beta-lactamase [Bacillus cereus BDRD-Cer4]
gi|29896154|gb|AAP09434.1| Beta-lactamase [Bacillus cereus ATCC 14579]
gi|228652566|gb|EEL08473.1| Beta-lactamase [Bacillus cereus BDRD-Cer4]
Length = 312
Score = 43.0 bits (99), Expect = 0.065, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++HM + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|254685078|ref|ZP_05148938.1| beta-lactamase [Bacillus anthracis str. CNEVA-9066]
gi|254722484|ref|ZP_05184272.1| beta-lactamase [Bacillus anthracis str. A1055]
gi|254737525|ref|ZP_05195228.1| beta-lactamase [Bacillus anthracis str. Western North America
USA6153]
gi|254743287|ref|ZP_05200972.1| beta-lactamase [Bacillus anthracis str. Kruger B]
gi|254751840|ref|ZP_05203877.1| beta-lactamase [Bacillus anthracis str. Vollum]
gi|254760360|ref|ZP_05212384.1| beta-lactamase [Bacillus anthracis str. Australia 94]
Length = 312
Score = 43.0 bits (99), Expect = 0.066, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 75 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K +K ++ M + T
Sbjct: 132 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRQMGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTKWMKGNATGDKLIRAGVPTN 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 252 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYD 296
>gi|284159975|ref|YP_001063864.2| class D beta-lactamase [Burkholderia pseudomallei 668]
gi|283775156|gb|ABN88168.2| class D beta-lactamase [Burkholderia pseudomallei 668]
Length = 269
Score = 43.0 bits (99), Expect = 0.066, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 1 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLVQ-NGDCGRRASPASTFK 56
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 57 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 114
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 115 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 150
>gi|227497058|ref|ZP_03927308.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinomyces urogenitalis DSM 15434]
gi|226833455|gb|EEH65838.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinomyces urogenitalis DSM 15434]
Length = 465
Score = 43.0 bits (99), Expect = 0.066, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
++D TG + ++ PAS KL+TA
Sbjct: 89 TASTAVAIIDVATGQTLVDHNASTALTPASSNKLLTA 125
>gi|116491873|ref|YP_803608.1| Beta-lactamase class A [Pediococcus pentosaceus ATCC 25745]
gi|116102023|gb|ABJ67166.1| Beta-lactamase class A [Pediococcus pentosaceus ATCC 25745]
Length = 391
Score = 43.0 bits (99), Expect = 0.066, Method: Composition-based stats.
Identities = 35/217 (16%), Positives = 68/217 (31%), Gaps = 14/217 (6%)
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLI 112
AS KL + + E K L T+ + + GS +++ + L+ ++
Sbjct: 173 ASNIKLFILITAYQQVNEGKLNLNDKYTLKDSDKVDGTGEIRNMSSGSEISMQDLLEDMM 232
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-----HGHYTTA 167
S N A + L + +N K +G T +YT+
Sbjct: 233 EDSDNTAANIVIRQL-----GGMDKVNAQIKKIGAKDTKLERMLMDTDALKDGKDNYTSV 287
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
D+ ++ +I Y +K KTG G
Sbjct: 288 ADLGMVLKKIYNHQMVSTKYDNAMLDILKKNNNHTKLPHDLPEEATVYNKTGEFDDYGVE 347
Query: 228 IVASAIQGDQ-SLIAVILGALDRNTRNKVSASLLSMG 263
A+ ++ S + V++ +R++ + S G
Sbjct: 348 NDAAIFGNNKGSFVIVVM--SQDGSRDEQIKKMNSFG 382
>gi|296392831|ref|YP_003657715.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Segniliparus rotundus
DSM 44985]
gi|296179978|gb|ADG96884.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Segniliparus rotundus
DSM 44985]
Length = 494
Score = 43.0 bits (99), Expect = 0.067, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+LD +G + + PD PAS KL+TA
Sbjct: 122 SGVVLDGVSGAALWQRDPDAAMTPASTMKLLTA 154
>gi|288962172|ref|YP_003452467.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
gi|288914438|dbj|BAI75923.1| D-alanyl-D-alanine carboxypeptidase [Azospirillum sp. B510]
Length = 492
Score = 43.0 bits (99), Expect = 0.068, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ + L D + G V+ D P PAS+ KL T
Sbjct: 50 PDSAAIGHILFDPDDGRVLDALAADTPVIPASVAKLPTVAAAL 92
>gi|317970457|ref|ZP_07971847.1| putative beta-lactamase [Synechococcus sp. CB0205]
Length = 349
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 8/163 (4%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+ + + + Y L+ + G AE P P AS K V
Sbjct: 63 LTALSKRWAQLAAQYKDLTVSGYLLV-LDDGRF-AELAPQRPLPAASSIKTPILLVALED 120
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESL 127
L K + ++K K +T A +I S N + + +
Sbjct: 121 LDAGKLRWDERLPMTKEVVGGGAGWMANKPVGTTFPFWEAANEMIRVSDNTATNLLIKRV 180
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+N + LGLS+T N + + T+A D+
Sbjct: 181 -----GGKAVINARFQALGLSSTVVNNWLPDLDGTNTTSAYDL 218
>gi|283778706|ref|YP_003369461.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Pirellula staleyi DSM 6068]
gi|283437159|gb|ADB15601.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Pirellula staleyi DSM 6068]
Length = 524
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
++ + + + L +D +G V+ E + PAS+TKL + +
Sbjct: 32 SLAMAVQALADQPLYAQAHWGILAVDLESGEVVLERDSGKLFAPASVTKLFSCASALDY 90
>gi|196232517|ref|ZP_03131369.1| serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
Ellin428]
gi|196223279|gb|EDY17797.1| serine-type D-Ala-D-Ala carboxypeptidase [Chthoniobacter flavus
Ellin428]
Length = 167
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 35/166 (21%), Positives = 55/166 (33%), Gaps = 29/166 (17%)
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYTT-------ARDMAILSWRIKTDFPQYMHYFQI 190
MN ++ G+ T F+N HG+ A+ A F +I
Sbjct: 1 MNALARTKGMRNTKFLNPHGLDNLERSVPYSTADDLAKLTAYAMANSAFRFYVSQRERKI 60
Query: 191 KGLEIKG-----KKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD--------- 236
NTN +G DG+KTG T +G ++ SA +
Sbjct: 61 TIFSFSTGGQSAYLLRNTNELLGINS-IDGVKTGTTARAGQCVIISAARTPESRQEGETH 119
Query: 237 ----QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIK 278
+ L V+LGA + R + +LL+ G+ K
Sbjct: 120 VITPRRLNVVVLGATN---RFANAQALLARGWQLYDAWAAAGRPAK 162
>gi|163735223|ref|ZP_02142658.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter litoralis Och 149]
gi|161391437|gb|EDQ15771.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter litoralis Och 149]
Length = 499
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + D TG ++ P+ PAS+TK +TA
Sbjct: 63 AFAVADAKTGEILEARTPELGIAPASVTKAITALYALD 100
>gi|228939651|ref|ZP_04102233.1| Beta-lactamase [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228972512|ref|ZP_04133119.1| Beta-lactamase [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228979122|ref|ZP_04139469.1| Beta-lactamase [Bacillus thuringiensis Bt407]
gi|228780597|gb|EEM28817.1| Beta-lactamase [Bacillus thuringiensis Bt407]
gi|228787195|gb|EEM35167.1| Beta-lactamase [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228819989|gb|EEM66032.1| Beta-lactamase [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|326940243|gb|AEA16139.1| Beta-lactamase [Bacillus thuringiensis serovar chinensis CT-43]
Length = 312
Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats.
Identities = 34/225 (15%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--TLNEVITFTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++ M + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRKMGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D +
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEASYD 296
>gi|113970270|ref|YP_734063.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella sp. MR-4]
gi|113884954|gb|ABI39006.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella sp. MR-4]
Length = 513
Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 14 SNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
S ++ L D +T ++ D + PAS K++TA
Sbjct: 46 STFAKQIADIAPRHSQVALLARDLSTNTLLYSQQADTLFIPASTQKVLTAVTAM 99
>gi|114047539|ref|YP_738089.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella sp. MR-7]
gi|113888981|gb|ABI43032.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella sp. MR-7]
Length = 513
Score = 43.0 bits (99), Expect = 0.070, Method: Composition-based stats.
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 14 SNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
S ++ L D +T ++ D + PAS K++TA
Sbjct: 46 STFAKQIADIAPRHSQVALLARDLSTNTLLYSQQADTLFIPASTQKVLTAVTAM 99
>gi|294678149|ref|YP_003578764.1| penicillin-binding protein 4 [Rhodobacter capsulatus SB 1003]
gi|294476969|gb|ADE86357.1| penicillin-binding protein 4 [Rhodobacter capsulatus SB 1003]
Length = 482
Score = 43.0 bits (99), Expect = 0.072, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
Y + D +G V+ P PAS K +T
Sbjct: 51 GYVVADARSGLVLEARDGGKPMAPASTAKAITTLYALE 88
>gi|126731191|ref|ZP_01746999.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Sagittula stellata E-37]
gi|126708493|gb|EBA07551.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Sagittula stellata E-37]
Length = 500
Score = 42.7 bits (98), Expect = 0.072, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D TG V+ + PD PAS+ K +T+
Sbjct: 67 VSDAATGEVLESHDPDQGLPPASVAKALTSGYAL 100
>gi|260905548|ref|ZP_05913870.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Brevibacterium linens BL2]
Length = 485
Score = 42.7 bits (98), Expect = 0.073, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMT 61
D + ++ + P PAS+TK++T
Sbjct: 108 DGLSDDILYAKNENKPRTPASVTKVLT 134
>gi|294013124|ref|YP_003546584.1| beta-lactamase class A [Sphingobium japonicum UT26S]
gi|292676454|dbj|BAI97972.1| beta-lactamase class A [Sphingobium japonicum UT26S]
Length = 323
Score = 42.7 bits (98), Expect = 0.073, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
D TG + D + AS KL A + S L L P+
Sbjct: 61 DLGTGETL-AYNGDTLFPMASTYKLAVAAKILSLLDAGSLSLDEPLM 106
>gi|297201396|ref|ZP_06918793.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces sviceus ATCC 29083]
gi|197713804|gb|EDY57838.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces sviceus ATCC 29083]
Length = 458
Score = 42.7 bits (98), Expect = 0.074, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 20/58 (34%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+ + P L ++D +G + PAS TK+ TA S
Sbjct: 77 ALADVLGPLLGNTALGTRHTAAVVDVASGRRLYGAGAGTALIPASTTKIATAVAALSA 134
>gi|254421584|ref|ZP_05035302.1| beta-lactamase, putative [Synechococcus sp. PCC 7335]
gi|196189073|gb|EDX84037.1| beta-lactamase, putative [Synechococcus sp. PCC 7335]
Length = 511
Score = 42.7 bits (98), Expect = 0.074, Method: Composition-based stats.
Identities = 34/251 (13%), Positives = 67/251 (26%), Gaps = 7/251 (2%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+A L L T +P D +TG + AS KL F +
Sbjct: 226 IAPLKAALQALPDQYTGLVPKVFYADVDTGE-YVSVGGEEAIAAASTIKLPILLAFFEDV 284
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
+ L +++ + T + ++ ++++ A + L
Sbjct: 285 DAGRIDLMKTMSMKPEQIASGSGDMQVADPKTQYTALEVASQMIVTSDNTATNMMIDLLG 344
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+ N + G + T+ARD+A I +
Sbjct: 345 GPEALNNRFINYGLETTQLNAPLPDLEGT----NLTSARDLAHTMLLISQGESLTVRSRD 400
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGA-DGMKTGFTCASGFNIVASAIQGDQSLIAVIL-GAL 247
+ + + A GA KTG + +I + + + L
Sbjct: 401 HILNILNRTRSKDLLPATLEEKGALTYNKTGDIRSVLGDIALVDLPNGKRYVVAALVQRP 460
Query: 248 DRNTRNKVSAS 258
+ R
Sbjct: 461 SNDIRAAELIR 471
>gi|308097805|gb|ADO14463.1| oxacillinase OXA-114g [Achromobacter xylosoxidans]
Length = 275
Score = 42.7 bits (98), Expect = 0.075, Method: Composition-based stats.
Identities = 19/243 (7%), Positives = 52/243 (21%), Gaps = 11/243 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD----HPWNPASLT 57
R+ + A+ + + + D G ++ + + PAS
Sbjct: 4 RRLSCALGAALSLSALGGGPVQAAVLCT--VVADAADGRILFQQGTQQACAERYTPASTF 61
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KL A + + + + + + + +
Sbjct: 62 KLAIALMGADAGILQGPHEPVWNYQPAYPDWGGDAWRQPTDPARWIKYSVVWYSQLTAKA 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
++ G +++ + R + R
Sbjct: 122 LGQDRFQRYTSAFGYGNADVSGEPGRHNGTDGAWIISSLRISPLEQLAFLR---KVVNRQ 178
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
+ + G++G+ T V A + +
Sbjct: 179 LPVKAAAYELADNLFEVGQADGWRLYGKTGTGSPGSNGVYTAANAYGW--FVGWARKDGR 236
Query: 238 SLI 240
L+
Sbjct: 237 QLV 239
>gi|81345570|gb|ABB71442.1| beta-lactamase [Pseudomonas aeruginosa]
Length = 288
Score = 42.7 bits (98), Expect = 0.075, Method: Composition-based stats.
Identities = 38/255 (14%), Positives = 82/255 (32%), Gaps = 17/255 (6%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASL-TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S T + A +++ ++ K + + I K + G +TLD+A
Sbjct: 61 FPLTSTFTTIACAKLLYDA-EQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACF 119
Query: 110 LLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+ S N A I ++ K F++ + + L T
Sbjct: 120 ATMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPK 179
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ L+ + M+ +++ + + N +V ++G +
Sbjct: 180 AIASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARS 239
Query: 228 IVASAIQGDQSLIAV 242
I A Q+ I V
Sbjct: 240 ITAVVWSEHQAPIIV 254
>gi|84502891|ref|ZP_01001004.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Oceanicola batsensis HTCC2597]
gi|84388874|gb|EAQ01744.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Oceanicola batsensis HTCC2597]
Length = 497
Score = 42.7 bits (98), Expect = 0.075, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 13 LSNIFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
L+ + + D G + P P PAS+ K +TA
Sbjct: 45 LALTAERIVEEANLSGEAAFTVFDLTRGRPLEARSPTRPMPPASVAKALTALYALD 100
>gi|94984424|ref|YP_603788.1| beta-lactamase [Deinococcus geothermalis DSM 11300]
gi|94554705|gb|ABF44619.1| beta-lactamase [Deinococcus geothermalis DSM 11300]
Length = 315
Score = 42.7 bits (98), Expect = 0.075, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
G + PD + AS K+ + S + + L
Sbjct: 62 GRELYALNPDRVFPAASTIKVPLLLLALSEAQAGRLDL 99
>gi|298501376|gb|ADI82848.1| beta-lactamase OXY-5 [Klebsiella pneumoniae]
Length = 290
Score = 42.7 bits (98), Expect = 0.076, Method: Composition-based stats.
Identities = 44/285 (15%), Positives = 78/285 (27%), Gaps = 24/285 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPD 48
+ L+ A+ +L + A+ + L++ + + D
Sbjct: 8 KTALMAAAVPLLLASGSLWASADAIQQKLADLEKHSGGRLGVALINTADDSQTLY--RGD 65
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M A V + ++ + I K + S MTL
Sbjct: 66 ERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKADLVVWSPITEKHLQSGMTLAELS 125
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F Q + + + L +A + T
Sbjct: 126 AAALQYSDNTAMNKIIGYLGGPEKVTAFAQSIGDVTFRLDRMEPALNSAIPGDERDTTTP 185
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L + Q+ + A A G KTG
Sbjct: 186 LAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWAVGDKTGAGDYGTT 245
Query: 227 NIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G
Sbjct: 246 NDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 290
>gi|51893570|ref|YP_076261.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
gi|51857259|dbj|BAD41417.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
Length = 301
Score = 42.7 bits (98), Expect = 0.076, Method: Composition-based stats.
Identities = 34/213 (15%), Positives = 71/213 (33%), Gaps = 11/213 (5%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-KNASEYPPS 92
D +T D + AS K++ A ++ + L P+ I + +
Sbjct: 66 YDLSTHET-FGVRADEVYTAASTVKVLIANYLYHLAATGQVSLDEPLAIRAVDWKDGSGI 124
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ G+ + L +L++V S N A A+ L M ++LG+
Sbjct: 125 LNGVPDGTRLPLREVARLMLVHSDNTAANALMRRLGVQP------MVQYYRSLGIRYGTP 178
Query: 153 -MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
M+ G + G+ D+ I+ I + ++ ++ + A
Sbjct: 179 RMHTPGELWEGNRIAPEDLGIVLRNIWEAARRSPEPWEELLGFMRESRSKGRIPAGLPSH 238
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KTG A+ + + + V++
Sbjct: 239 VPMANKTG--SKGTSFHDAALVLDRRPYVLVVM 269
>gi|255533536|ref|YP_003093908.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Pedobacter heparinus DSM 2366]
gi|255346520|gb|ACU05846.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Pedobacter heparinus DSM 2366]
Length = 468
Score = 42.7 bits (98), Expect = 0.078, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 19 FLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
FL+ +T L+ D NTG + + AS K +TA F
Sbjct: 33 FLANPQTRYASTSLLVLDANTGKTLFGRNENIGLATASTLKTITAATAF 81
>gi|29348596|ref|NP_812099.1| penicillin-binding protein D-alanyl-D-alanine carboxypeptidase
[Bacteroides thetaiotaomicron VPI-5482]
gi|29340501|gb|AAO78293.1| penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase
[Bacteroides thetaiotaomicron VPI-5482]
Length = 468
Score = 42.7 bits (98), Expect = 0.078, Method: Composition-based stats.
Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 13/79 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-------------LLDTNTGHVIAENYP 47
M+++L+ + +++ A +++ + D +
Sbjct: 1 MKKYLLFLVLSVALLPTSVWGQANLSQIDSLIKRMLPEASEVGISVYDLTAKKSLYTYRD 60
Query: 48 DHPWNPASLTKLMTAYVVF 66
PAS KL+TA
Sbjct: 61 TKLSRPASTMKLLTAITAL 79
>gi|290890592|ref|ZP_06553663.1| hypothetical protein AWRIB429_1053 [Oenococcus oeni AWRIB429]
gi|290479720|gb|EFD88373.1| hypothetical protein AWRIB429_1053 [Oenococcus oeni AWRIB429]
Length = 264
Score = 42.7 bits (98), Expect = 0.080, Method: Composition-based stats.
Identities = 32/206 (15%), Positives = 75/206 (36%), Gaps = 7/206 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ N G +I++ + + L++L+ Y V S ++ KK L TP+ +S+ S
Sbjct: 8 AQSSLFAELN-GKIISKKNVRKTFPISDLSRLVLIYEVLSAIRSKKISLDTPLIVSEKIS 66
Query: 88 EYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + F+ G T+ A+++L++ S A + E + +K+ K
Sbjct: 67 LFSKKDRSAAMHFQIGEFFTVKQAIEILLIMSEKSAAYLLIEKIFGNLEKWRSETARFLK 126
Query: 144 NLGLSA--THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ + + +A + + ++ DFP+ + Q K + +
Sbjct: 127 QEKIDGLIYEPVGLMSGEGRENLLSAISILKVINKLVNDFPKILAMTQKKQFIFQSDRQV 186
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFN 227
+ ++ A +
Sbjct: 187 QFYRNPSFKQRINNLQISAFFAEKYQ 212
>gi|254927433|gb|ACT85949.1| beta-lactamase CTX-M-15 [Escherichia coli]
gi|255964402|gb|ACU44519.1| beta-lactamase CTX-M-15 [Escherichia coli]
gi|255964406|gb|ACU44521.1| beta-lactamase CTX-M-15 [Escherichia coli]
gi|260914756|gb|ACX54229.1| beta-lactamase blaCTX-M-15 [Escherichia coli]
Length = 241
Score = 42.7 bits (98), Expect = 0.080, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 27/240 (11%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
>gi|83953437|ref|ZP_00962159.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Sulfitobacter sp. NAS-14.1]
gi|83842405|gb|EAP81573.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Sulfitobacter sp. NAS-14.1]
Length = 503
Score = 42.7 bits (98), Expect = 0.080, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
L D TG V+ +N P PAS+TK +TA
Sbjct: 66 LADAETGAVLEQNGPLDGMPPASVTKAITALYALD 100
>gi|83944396|ref|ZP_00956850.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Sulfitobacter sp. EE-36]
gi|83844719|gb|EAP82602.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Sulfitobacter sp. EE-36]
Length = 503
Score = 42.7 bits (98), Expect = 0.080, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
L D TG V+ +N P PAS+TK +TA
Sbjct: 66 LADAETGAVLEQNGPLDGMPPASVTKAITALYALD 100
>gi|282900879|ref|ZP_06308815.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Cylindrospermopsis
raciborskii CS-505]
gi|281194217|gb|EFA69178.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Cylindrospermopsis
raciborskii CS-505]
Length = 504
Score = 42.7 bits (98), Expect = 0.080, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 32 TLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
L+ + ++ ++ + PAS TK++TA +
Sbjct: 78 ILIKNLSSDQILYSRDAQKYFIPASTTKILTAAAAWQK 115
>gi|256824220|ref|YP_003148180.1| hypothetical protein Ksed_03380 [Kytococcus sedentarius DSM
20547]
gi|256687613|gb|ACV05415.1| hypothetical protein Ksed_03380 [Kytococcus sedentarius DSM
20547]
Length = 113
Score = 42.7 bits (98), Expect = 0.080, Method: Composition-based stats.
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
P + +TL G V+ +++ + AS K+ ++ L
Sbjct: 12 PTRPAPPEDPAVGWTLA-AEDGTVLDDHHGTREFYAASTLKVGVLLTALRAVEAGTVDLA 70
Query: 78 TPITISKNASEYPP 91
P+ ++ +
Sbjct: 71 DPLVSTRTFTGADG 84
>gi|297563450|ref|YP_003682424.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296847898|gb|ADH69918.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 545
Score = 42.7 bits (98), Expect = 0.080, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D TG V+ PAS KL TA
Sbjct: 81 VTDPATGAVLYSRDSGEQLVPASNMKLFTAAAALD 115
>gi|163940290|ref|YP_001645174.1| Beta-lactamase [Bacillus weihenstephanensis KBAB4]
gi|163862487|gb|ABY43546.1| Beta-lactamase [Bacillus weihenstephanensis KBAB4]
Length = 309
Score = 42.7 bits (98), Expect = 0.080, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ L IT +K+
Sbjct: 72 IDTGTNRTIAYR-PNERFAFASTYKALAAGVLLQQNSID--KLNEVITYTKDDLVEYSPI 128
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++ M +
Sbjct: 129 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRQMGDRVTIADRFEPE 188
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 189 LNEATPGDIRDTSTAKAIATNLKAFTVGNALPADKRKVLTEWMKGNATGDKLIRAGVPTD 248
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 249 WIVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEAAYD 293
>gi|114707811|ref|ZP_01440705.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Fulvimarina pelagi
HTCC2506]
gi|114536800|gb|EAU39930.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Fulvimarina pelagi
HTCC2506]
Length = 396
Score = 42.7 bits (98), Expect = 0.080, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY----YTLLDTNTGHVIAENYPDHPWNPASL 56
M Q + + L A+ +LD + G + D + PAS+
Sbjct: 1 MFQLIAFVFALALLAAPAKADTADGIAAMAPSGLVLVLDED-GEDLVAQNTDEAFVPASV 59
Query: 57 TKLMTAYVVFS 67
KL+TA++
Sbjct: 60 AKLVTAWLAME 70
>gi|325961730|ref|YP_004239636.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Arthrobacter phenanthrenivorans Sphe3]
gi|323467817|gb|ADX71502.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Arthrobacter phenanthrenivorans Sphe3]
Length = 519
Score = 42.7 bits (98), Expect = 0.081, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D TG V+ + PAS KL+TA
Sbjct: 115 LVQDALTGQVLFDRGGSENRVPASNLKLLTAIAALRA 151
>gi|255261596|ref|ZP_05340938.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Thalassiobium sp. R2A62]
gi|255103931|gb|EET46605.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Thalassiobium sp. R2A62]
Length = 504
Score = 42.7 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ L D TG V+ N PAS+ K +TA
Sbjct: 70 AFMLADAETGEVLEANAEQIAQPPASVAKAVTALYALDQ 108
>gi|73913582|gb|AAZ91704.1| PSE-1/CARB-2 beta-lactamase [Escherichia coli]
Length = 288
Score = 42.7 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLAFSLLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 61 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKTDLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 121 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 180
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 181 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGRNIADRSGAGGFGARSI 240
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 241 TAVVWSEHQAPIIV 254
>gi|182414977|ref|YP_001820043.1| beta-lactamase [Opitutus terrae PB90-1]
gi|177842191|gb|ACB76443.1| beta-lactamase [Opitutus terrae PB90-1]
Length = 862
Score = 42.7 bits (98), Expect = 0.083, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 27/103 (26%), Gaps = 16/103 (15%)
Query: 28 LPYYTLLDTNTGHVIAENY-------------PDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+D G +I PD S++K++TA V +++ +
Sbjct: 33 ATVAVAVD---GRIIFARGYGFADPEAGRPMQPDTRMRIGSISKMLTAAAVLKLVEDGRL 89
Query: 75 MLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
L + Y + + S+
Sbjct: 90 SLQDRAFLGWPTPTYAGAARDPRLDRITVAHLLSHTAGWISSE 132
>gi|226227867|ref|YP_002761973.1| D-alanyl-D-alanine carboxypeptidase [Gemmatimonas aurantiaca T-27]
gi|226091058|dbj|BAH39503.1| D-alanyl-D-alanine carboxypeptidase [Gemmatimonas aurantiaca T-27]
Length = 545
Score = 42.7 bits (98), Expect = 0.084, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
L+D I + D + PAS KL+TA +
Sbjct: 83 LLVDAERNDTILSHDADRLFMPASNQKLLTAAIALQH 119
>gi|912450|dbj|BAA02999.1| beta-lactamase [Streptomyces fradiae]
gi|4514651|dbj|BAA75488.1| beta-lactamase [Streptomyces fradiae]
Length = 306
Score = 42.7 bits (98), Expect = 0.084, Method: Composition-based stats.
Identities = 27/218 (12%), Positives = 54/218 (24%), Gaps = 7/218 (3%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
DT TG +A D + AS+ K + V L +L + + + +
Sbjct: 58 GAFAYDTGTGRTVAYR-ADERFPIASMFKTIAVAAVLRDLDRDGEVLARRVHYTADYVKR 116
Query: 90 PPSNSTFKKGST----MTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSK 143
+ MT+ + + +S N A + +F + + +
Sbjct: 117 SGYSPVTGLPENVANGMTVAELCEATLTRSDNTAANLLLHDLGGPTAVTRFCRSVGDHVT 176
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
L +A + I D ++ + +
Sbjct: 177 RLDRWEPELNSAEPGRVTDTTSPRAIGRTYGRLILGDLLAAHDRERLTRWMLDNRTSDER 236
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
KTG N A + +
Sbjct: 237 FRKGLPADWLLADKTGGGDYGTNNDAGVAWPPGRPPVV 274
>gi|221210663|ref|ZP_03583643.1| beta-lactamase [Burkholderia multivorans CGD1]
gi|221169619|gb|EEE02086.1| beta-lactamase [Burkholderia multivorans CGD1]
Length = 269
Score = 42.7 bits (98), Expect = 0.085, Method: Composition-based stats.
Identities = 26/235 (11%), Positives = 57/235 (24%), Gaps = 20/235 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAEN-YPDHPWNPASLTKL 59
M+ + + + + + A + + D TG V+ + PAS K+
Sbjct: 1 MKHWRHALFVVTAGLLTTAAAQARSLCT---VVADAATGRVLVQQGDCATRVTPASTFKV 57
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+ + F +L T + + P +KL I + +
Sbjct: 58 AISLMGFDA-----GVLKDEHTPTLDFHAGYPDWGGAPWREPTDPARWMKLSIFWYSEQV 112
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
A+ ++ + G + G + +S +
Sbjct: 113 TQALGQA----------RFQQYTSAFGYGNADVTSRQGELSGVMGAWVNSSLQISPLEQV 162
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-GADGMKTGFTCASGFNIVASAI 233
F + + + KTG + A
Sbjct: 163 GFMRRIANRTLPVSAHAYDMTERITLIDRQPDGWIVHGKTGTGSPGARYDASHAY 217
>gi|221229328|gb|ABO61017.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 301
Score = 42.7 bits (98), Expect = 0.086, Method: Composition-based stats.
Identities = 31/213 (14%), Positives = 57/213 (26%), Gaps = 2/213 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K + V S + L T + I+
Sbjct: 59 VLNTGNGRRIGGHRQDERFPMCSTFKSLLVAHVLSLADAGRVSLDTRVPIAGKDLLSYAP 118
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 119 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSIPRNDRNEP 178
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A L+ + Q Q I + A
Sbjct: 179 DVNLFVKGDPRDTTSPAAMATSLARFAVGNGLQPASRQQFADWLIDNQTGDACLRAGLGT 238
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
G KTG N +A V+
Sbjct: 239 RWRVGDKTGSNGDDTRNDIAVLWPHGGGTAWVV 271
>gi|254486946|ref|ZP_05100151.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter sp. GAI101]
gi|214043815|gb|EEB84453.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter sp. GAI101]
Length = 497
Score = 42.7 bits (98), Expect = 0.087, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 18 PFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ A + + D TG+++ E P PAS+TK +TA
Sbjct: 44 SAVPKAADLIAQARLNGRVAFAVADAKTGNMLEEMSPSAGMPPASVTKAITALYALD 100
>gi|260914760|gb|ACX54232.1| beta-lactamase blaCTX-M-15 [Escherichia coli]
Length = 239
Score = 42.7 bits (98), Expect = 0.089, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 64/240 (26%), Gaps = 27/240 (11%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHY 164
+ S N + + + L T +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDT 183
Query: 165 TTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T+ R MA D + +KG A G KTG
Sbjct: 184 TSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTG 239
>gi|120403343|ref|YP_953172.1| beta-lactamase [Mycobacterium vanbaalenii PYR-1]
gi|119956161|gb|ABM13166.1| Beta-lactamase [Mycobacterium vanbaalenii PYR-1]
Length = 297
Score = 42.7 bits (98), Expect = 0.089, Method: Composition-based stats.
Identities = 32/202 (15%), Positives = 58/202 (28%), Gaps = 5/202 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +T I E D P+ S K A V + + L I I
Sbjct: 58 LDLDTQRGI-EFGADEPFAMCSTFKAYAAAAVLQRTQTGELTLNDAIPIEPGDIRPHSPV 116
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + G++M+L + + +S N A + + F + + + L
Sbjct: 117 TEPRVGTSMSLAELCQAALQQSDNAAANGLLRVLGGPQAITAFARSIGDHRTRLDRWEVE 176
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ + T+ +R + + L+ ++ A
Sbjct: 177 LNS--ALPGDPRDTSTPRALGDGYRNILTGDVLNPPTRRQLLDWMLANQTSSMRAGLPAG 234
Query: 212 GADGMKTGFTCASGFNIVASAI 233
KTG N V A
Sbjct: 235 YTSADKTGSGDYGTTNDVGVAY 256
>gi|228969873|ref|ZP_04130603.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar sotto str. T04001]
gi|228789826|gb|EEM37678.1| D-Ala-D-Ala carboxypeptidase A; Serine peptidase; MEROPS family
S11 [Bacillus thuringiensis serovar sotto str. T04001]
Length = 66
Score = 42.7 bits (98), Expect = 0.090, Method: Composition-based stats.
Identities = 7/52 (13%), Positives = 19/52 (36%), Gaps = 8/52 (15%)
Query: 2 RQFLVIIAMAMLSN--------IFPFLSIAETNKLPYYTLLDTNTGHVIAEN 45
++F+ I+ + L A + L++ N+G ++ +
Sbjct: 12 KRFIAIVTVLTLFFSMFVTFGRAAAETVSAIDVEAGSAILIEANSGKILYQK 63
>gi|219920909|emb|CAQ76632.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 42.7 bits (98), Expect = 0.090, Method: Composition-based stats.
Identities = 31/204 (15%), Positives = 56/204 (27%), Gaps = 4/204 (1%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + + S N I L EK F + + + + L +
Sbjct: 113 KHLQSGMTLADLSAATLQYSDNTAMNLIIGYLGGPEKVTAFARSIGDATFRLDRTEPTLN 172
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A + T L + Q+ + A
Sbjct: 173 TAIPGDERDTSTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPESWV 232
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ 237
G KTG N +A +
Sbjct: 233 VGDKTGAGDYGTTNDIAVIWPENH 256
>gi|218234838|ref|YP_002367214.1| beta-lactamase [Bacillus cereus B4264]
gi|229178857|ref|ZP_04306217.1| Beta-lactamase [Bacillus cereus 172560W]
gi|218162795|gb|ACK62787.1| beta-lactamase [Bacillus cereus B4264]
gi|228604622|gb|EEK62083.1| Beta-lactamase [Bacillus cereus 172560W]
Length = 312
Score = 42.7 bits (98), Expect = 0.090, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--TLNEVITFTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++HM + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTE 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|46277646|gb|AAS87025.1| beta-lactamase ORN-3 [Raoultella ornithinolytica]
Length = 291
Score = 42.7 bits (98), Expect = 0.092, Method: Composition-based stats.
Identities = 35/232 (15%), Positives = 70/232 (30%), Gaps = 6/232 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +G +++ + S K++ V S + + L I +
Sbjct: 45 LDLASGQLLSGYCAGERFPMMSTFKVLLCGAVLSRVDTGEEQLDRRIHYRQQDLVEYSPV 104
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ +T+ I S N A + +L + F++H + + L T
Sbjct: 105 TEKHLADGLTVGELCAAAITLSDNTAANLLLTTLGGPQGLTTFLRHSGDQTSRLDRWETE 164
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + Q++ ++ K +
Sbjct: 165 LNEARPGDVRDTTTPEAMARTLRNLLTGRVLSPASQQQLQRWMVEDKVAGPLLRSALPAG 224
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ--SLIAVILGAL--DRNTRNKVSASL 259
KTG I+A+ + ++ + L A + RNK A++
Sbjct: 225 WFIADKTGAGNRGSRGIIAALGPDGKAARIVVIYLTATPASMDERNKQIAAI 276
>gi|296118976|ref|ZP_06837549.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Corynebacterium ammoniagenes DSM 20306]
gi|295968074|gb|EFG81326.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Corynebacterium ammoniagenes DSM 20306]
Length = 434
Score = 42.7 bits (98), Expect = 0.093, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
L+ + + +++T+TG V+ E+ P PAS TK+
Sbjct: 70 ALAESPSVPTLGAQVINTSTGEVLWEHDSTTPLIPASSTKV 110
>gi|289583353|ref|YP_003481763.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Natrialba magadii ATCC 43099]
gi|289532851|gb|ADD07201.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Natrialba magadii ATCC 43099]
Length = 457
Score = 42.3 bits (97), Expect = 0.094, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
D TG I P+ P PAS TKL+TA F
Sbjct: 33 SASVYAADLRTGEPIVAANPNIPLLPASNTKLVTAARAFDE 73
>gi|309798463|ref|ZP_07692760.1| conserved domain protein [Escherichia coli MS 145-7]
gi|308118027|gb|EFO55289.1| conserved domain protein [Escherichia coli MS 145-7]
Length = 108
Score = 42.3 bits (97), Expect = 0.095, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 11/93 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
S K++ V S + + L I S+N
Sbjct: 66 MMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQN 98
>gi|4589729|dbj|BAA76882.1| class A beta-lactamase SFO-1 precursor [Enterobacter cloacae]
gi|226440723|gb|ACO57221.1| ampA [Enterobacter cloacae]
Length = 295
Score = 42.3 bits (97), Expect = 0.095, Method: Composition-based stats.
Identities = 38/280 (13%), Positives = 76/280 (27%), Gaps = 26/280 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT------------------LLD-TNTGHV 41
+RQ +++A M A++ L+D + +
Sbjct: 6 LRQTTLMVATVMPLLFGSAPLWAQSANAKANIQQQLSELEKNSGGRLGVALIDTADNSQI 65
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+ D + S +K+M + + K +L + I ++ + +
Sbjct: 66 LY--RGDERFPMCSTSKVMAVSALLKQSEMDKNLLAKRMEIKQSDLVNYNPIAEKHLDTG 123
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVV 159
MTL I S N I E L K ++ + + + + L + A
Sbjct: 124 MTLAELSAAAIQYSDNTAMNKILEHLGGPAKVTEYARTIGDKTFRLDRTEPTLNTAIPSD 183
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ + L Q+ + A G KTG
Sbjct: 184 KRDTTSPLAMAKSLQTLTLGKALGEPQRAQLVEWMKGNTTGGASIRAGLPATWVVGDKTG 243
Query: 220 FTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSAS 258
N +A + L+ V + +N +
Sbjct: 244 SGDYGTTNDIAVIWPANHAPLVLVT--YFTQPQQNAEARK 281
>gi|319939497|ref|ZP_08013857.1| peptidase family S11 [Streptococcus anginosus 1_2_62CV]
gi|319811483|gb|EFW07778.1| peptidase family S11 [Streptococcus anginosus 1_2_62CV]
Length = 351
Score = 42.3 bits (97), Expect = 0.096, Method: Composition-based stats.
Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 12/179 (6%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D +G + P S KL +V +++ +T I+ EY ++
Sbjct: 119 DLTSGQI-YAMNETQPMTAGSTYKLPLNMLVVDEVEKGNLSMTERFDITHTRYEYIGEHN 177
Query: 95 TFKKGST--MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ M++ + ++ S N A A+AE L +K + K G T
Sbjct: 178 NYVAAFNGTMSIPEMQEYSLLYSENTPAYALAERLGGLDKAYT-MYQRYGKGKGEVETI- 235
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ TT + + +Y G + Y + +
Sbjct: 236 -------NQQNQTTTDYYIQVLDYLWKHQEKYKDLLYYIGESFPNEYYKRYVRDIPIYQ 287
>gi|297587953|ref|ZP_06946597.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
[Finegoldia magna ATCC 53516]
gi|297574642|gb|EFH93362.1| serine-type D-Ala-D-Ala carboxypeptidase superfamily protein
[Finegoldia magna ATCC 53516]
Length = 312
Score = 42.3 bits (97), Expect = 0.097, Method: Composition-based stats.
Identities = 47/256 (18%), Positives = 88/256 (34%), Gaps = 28/256 (10%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN- 85
+++ D N G + ASL+KL + L I +++
Sbjct: 58 DALAFSVYDMNKGKYLFYEGGGQLPTVASLSKLFAIDYALTK-----VKLDDTIEVNREL 112
Query: 86 -ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-----------CKTEKK 133
S+ K T + ++ ++V S ND A A+A ++ K
Sbjct: 113 LELVPEGSSLAHLKVGKYTAEQIMQAMLVPSGNDAAFALAYNIGKKDLGDGYSAKKYVDY 172
Query: 134 FVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG- 192
FV++++ + G S TH + G T +D+ ++ ++ +
Sbjct: 173 FVKNLSKYLADEGYSKTHLFDPSGF-SIQADTNLKDINRVTLKLIDYDFVKKCMGKSSFS 231
Query: 193 --LEIKGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
+ NTN + G+KTG T AS +NIV + + + L
Sbjct: 232 IKTSQGEFTWENTNEFLDPKSAFYNKDIKGVKTG-TMASSYNIVVLYEKDGEKYLITCLA 290
Query: 246 ALDRNTRNKVSASLLS 261
+ R K S ++
Sbjct: 291 SHTNEDRYKAVQSAIN 306
>gi|206971699|ref|ZP_03232649.1| beta-lactamase [Bacillus cereus AH1134]
gi|206733684|gb|EDZ50856.1| beta-lactamase [Bacillus cereus AH1134]
Length = 312
Score = 42.3 bits (97), Expect = 0.097, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--TLNEVITFTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++HM + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTE 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|223940399|ref|ZP_03632253.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[bacterium Ellin514]
gi|223890948|gb|EEF57455.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[bacterium Ellin514]
Length = 514
Score = 42.3 bits (97), Expect = 0.097, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 26/93 (27%)
Query: 1 MRQFLV-IIAMAMLSNIFPFLSIAETNK-------------LP------------YYTLL 34
M+++ V ++++ ++F F S A+ ++
Sbjct: 1 MKKYFVPASCLSLVFSLFVFRSFAQETNRLPETLESLQKRIAKLVTKPQYDAGLFGVKIV 60
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+TG I E+ + +PAS +KL T +
Sbjct: 61 SLDTGKTIYEHDANKLCSPASNSKLYTMAMALD 93
>gi|52142992|ref|YP_083837.1| beta-lactamase [Bacillus cereus E33L]
gi|51976461|gb|AAU18011.1| beta-lactamase [Bacillus cereus E33L]
Length = 309
Score = 42.3 bits (97), Expect = 0.099, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT + IA P+ + AS K + A V+ K L IT +K
Sbjct: 72 IDTGSNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 128
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N + K +K ++ M + T
Sbjct: 129 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFNKIGGPKGYEKALRKMGDRITMSDRLETE 188
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 189 LNEAIPGDIRDTSTAKAVAMNLKAFTAGNALPNHKRNILTEWMKGNATGDKLIRAGVPTD 248
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 249 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 293
>gi|227538548|ref|ZP_03968597.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
4) [Sphingobacterium spiritivorum ATCC 33300]
gi|227241467|gb|EEI91482.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
4) [Sphingobacterium spiritivorum ATCC 33300]
Length = 457
Score = 42.3 bits (97), Expect = 0.100, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+LD+ TG+VI AS K++T+
Sbjct: 34 VLDSKTGNVIFSKNGQTGLPTASTLKVITSATALD 68
>gi|330470519|ref|YP_004408262.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Verrucosispora maris AB-18-032]
gi|328813490|gb|AEB47662.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Verrucosispora maris AB-18-032]
Length = 553
Score = 42.3 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ D TG + E PAS+TKL+TA V + + TT
Sbjct: 159 VTDALTGQQLFERGGGTGTVPASVTKLLTAVTVLTARGPGYRIPTT 204
>gi|228985589|ref|ZP_04145743.1| Beta-lactamase [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|228774166|gb|EEM22578.1| Beta-lactamase [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
Length = 332
Score = 42.3 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K + A V+ K L IT +K
Sbjct: 95 IDTGTNQTIAYR-PNERFAFASTYKALAAGVLLQQNSTK--KLDEVITYTKEDLVDYSPV 151
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N K + ++ M + T
Sbjct: 152 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFHKIGGPKGYENALRKMGDRVTMSDRFETE 211
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + + A
Sbjct: 212 LNEAIPGDIRDTSTAKAIAKNLKDLTVGNALPHQKRNILTDWMKGNATGDKLIRAGVPTD 271
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL D
Sbjct: 272 WVVADKSGAGSYGTRNDIAIVWPPNRSPIIIAILSNKDEKGATYD 316
>gi|312184031|gb|ADQ42778.1| beta-lactamase PER-1 [Acinetobacter baumannii]
Length = 289
Score = 42.3 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 21/229 (9%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L + +++ K
Sbjct: 55 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 114
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ L+ S + + L + +++ +++G+ T +
Sbjct: 115 VPVQQLLQYSVSHSDNVACDLLFELV-GGPAALHDYIQSMGIKETAVVANEAQ--MHADD 171
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------------- 211
+ S + + + + +
Sbjct: 172 QVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 231
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G G+K G T A+ ++ + + L+ + +R +
Sbjct: 232 KTGTSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 279
>gi|300770094|ref|ZP_07079973.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Sphingobacterium spiritivorum ATCC 33861]
gi|300762570|gb|EFK59387.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Sphingobacterium spiritivorum ATCC 33861]
Length = 457
Score = 42.3 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+LD+ TG+VI AS K++T+
Sbjct: 34 VLDSKTGNVIFSKNGQTGLPTASTLKVITSATALD 68
>gi|300810993|gb|ADK35774.1| beta-lactamase Oxa-9 [Klebsiella pneumoniae]
Length = 111
Score = 42.3 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 8/108 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN--KLPYYTLLDTNTGHVIAENYP-DHPWNPASLT 57
M++ L++ + +S P S+A L + D TG+ + E +P S
Sbjct: 1 MKKILLLHMLVFVSATLPISSVASDEVETLKCTIIADAITGNTLYETGECARRVSPCSSF 60
Query: 58 KLMTAYV-----VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100
KL A + + K L S Y +
Sbjct: 61 KLPLAIMGFDSGILQSPKSPTWELKPEYNPSPRDRTYKQVYPALWQSD 108
>gi|229588564|ref|YP_002870683.1| putative penicillin-binding exported protein [Pseudomonas
fluorescens SBW25]
gi|229360430|emb|CAY47287.1| putative penicillin-binding exported protein [Pseudomonas
fluorescens SBW25]
Length = 514
Score = 42.3 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 22 IAETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+L+ D +G + ++ P PAS KL+T
Sbjct: 69 ADPALNGATVSLMVRDARSGSTLYQHNPRTRVIPASNLKLLTTAAAMD 116
>gi|291455914|ref|ZP_06595304.1| putative beta-lactamase [Bifidobacterium breve DSM 20213]
gi|291382323|gb|EFE89841.1| putative beta-lactamase [Bifidobacterium breve DSM 20213]
Length = 508
Score = 42.3 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 32/228 (14%), Positives = 63/228 (27%), Gaps = 32/228 (14%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+ D TG + D AS KL AY + ++ + +
Sbjct: 309 VYDLKTGKSKIQIDADTAMTSASTYKLFIAYSMIHAVETGQVTWDSA------------- 355
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
L + ++ +A I S + ++ ++
Sbjct: 356 -----------------LNGMTLSSCMATMIINSDNSCPEAWLARYGFSTVAQQAHDIGA 398
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
N + V +G TTA D+A + ++ ++ + Y A G
Sbjct: 399 ANTNFVP-YGMTTTANDLATVLKGFYSNSIASPDSTDQLFSLMETQVYREGIPAGIGSDG 457
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
K GF + A VI+ + ++ L+
Sbjct: 458 VVQDKVGFMDGLLHD-AAIVRSDKGDYAMVIMTDGSSWNKIAQASLLI 504
>gi|197296820|gb|ACH58980.1| beta-lactamase [uncultured bacterium BLR1]
Length = 295
Score = 42.3 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 34/259 (13%), Positives = 70/259 (27%), Gaps = 17/259 (6%)
Query: 2 RQFLVIIAMA-MLSNIFPFLSIAETNKLPYYTL-LDTNTGHVI------------AENYP 47
R L+ ++ + S + + L+ +G + ++
Sbjct: 8 RTLLLAASVLPLASACTAWSAKGPQQDASAQLAALEAASGSRLGVVGFNTATGARVQHRA 67
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ + S KLM A V ++ +L + SK + + MT+
Sbjct: 68 EERFPFCSTFKLMLAAAVLERSAKEGDLLARRVNYSKGDLVSYSPITEKNVATGMTVAEL 127
Query: 108 LKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ S N A + + F + + L T A T
Sbjct: 128 CAATVQYSDNGAANLLMKILGGPSAVTAFARASGDEVFRLDRWETELNTAIPGDLRDTTT 187
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF-TCAS 224
A A + + + Q+K + A G KTG + +
Sbjct: 188 PAAMAASVQRLVLGNALGAAQREQLKTWLLGNTTSTQRFLAGVPAGWKVGDKTGSGSYGT 247
Query: 225 GFNIVASAIQGDQSLIAVI 243
++ L+ +
Sbjct: 248 TNDVGVLWPPAGAPLVLAV 266
>gi|83591472|ref|YP_425224.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Rhodospirillum
rubrum ATCC 11170]
gi|83574386|gb|ABC20937.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Rhodospirillum
rubrum ATCC 11170]
Length = 528
Score = 42.3 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
D TG ++ + P+ PAS++K+ T
Sbjct: 69 DLQTGRWLSAHNAQEPFLPASVSKVPTTVAALE 101
>gi|294669443|ref|ZP_06734520.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria elongata subsp. glycolytica ATCC 29315]
gi|291308647|gb|EFE49890.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria elongata subsp. glycolytica ATCC 29315]
Length = 470
Score = 42.3 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + TG + A + D NPAS KL+TA+
Sbjct: 34 AVYVQNLRTGQITAAHRADASVNPASTMKLVTAFAALHA 72
>gi|229030204|ref|ZP_04186262.1| Beta-lactamase [Bacillus cereus AH1271]
gi|228731094|gb|EEL82018.1| Beta-lactamase [Bacillus cereus AH1271]
Length = 312
Score = 42.3 bits (97), Expect = 0.10, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I P+ + AS K + A V+ + L +T +K
Sbjct: 75 IDTGTNQTI-SYRPNERFAFASTYKALAAGVLLQKNSTE--KLNEVVTYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ G+ MTL + + S N K +K ++ + + T
Sbjct: 132 TEKHVGTGMTLGAIAEAAVRYSDNTAGNILFHKIGGPKGYEKALRQIGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDNRDTSTAKAMATNLKDFTVGNALPDDKRSILTDWMRGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WIVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|69957073|gb|AAZ04368.1| Bel-1 [Pseudomonas aeruginosa]
gi|283580173|gb|ADB27941.1| BEL-1 [Pseudomonas aeruginosa]
gi|283580182|gb|ADB27948.1| BEL-1 [Pseudomonas aeruginosa]
Length = 283
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 66/216 (30%), Gaps = 5/216 (2%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP-ITISKNASEYPPSNST 95
G++I + + S KL A +V S + + S EY P+
Sbjct: 44 ENGNLIQGYRANERFAMCSTFKLPLAALVLSRIDAGEENPERKLHYDSAFLEEYAPAAKR 103
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATHFM 153
+ MT+ A++ + S N A + + + K+ + + + L
Sbjct: 104 YVATGYMTVTEAIQSALQLSDNAAANLLLKEVGGPPLLTKYFRSLGDKVSRLDRIEPTLN 163
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+ T +S I D Y Q++ L I + T A
Sbjct: 164 TNTPGDERDTTTPMSMAQTVSKLIFGDTLTYKSKGQLRRLLIGNQTGDKTIRAGLPDSWV 223
Query: 214 DGMKTG-FTCASGFNIVASAIQGDQSLI-AVILGAL 247
G KTG ++ + + +V A
Sbjct: 224 TGDKTGSCANGGRNDVAFFITTAGKKYVLSVYTNAP 259
>gi|56964459|ref|YP_176190.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
gi|56910702|dbj|BAD65229.1| D-alanyl-D-alanine carboxypeptidase [Bacillus clausii KSM-K16]
Length = 489
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
D T ++ E+ + +PAS K++TA +
Sbjct: 58 DGATNELLFEHNGNMLLHPASSMKVLTAVAALTE 91
>gi|282900734|ref|ZP_06308676.1| Penicillin-binding protein, transpeptidase [Cylindrospermopsis
raciborskii CS-505]
gi|281194534|gb|EFA69489.1| Penicillin-binding protein, transpeptidase [Cylindrospermopsis
raciborskii CS-505]
Length = 515
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 36/227 (15%), Positives = 77/227 (33%), Gaps = 9/227 (3%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
LS A N +P ++D ++G + + ++ AS K+ + K L
Sbjct: 198 LSAANPNLIPGVFIVDIDSGG-YVDVSGNKNFSAASTIKIPVLVAFLEDVDRGKIRLDEI 256
Query: 80 ITISKNASEYPPSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+T+ + N + + ++ S N + L + +
Sbjct: 257 LTMEQEMVAGGSGNLRTMPVGTKLKSIEVATKMMTISDNTATNMLISKL-----GGKELL 311
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGK 198
N ++ GL T + ++ + T+ +++A L ++ M + L+I +
Sbjct: 312 NARFRSWGLVNTAIQSPLPDLEGTNTTSPKELASLIAKVNQGELISMRSRDL-MLDIMRR 370
Query: 199 KYPNTNWAVGTFLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ G GA KTG + + + IA I+
Sbjct: 371 TQRDDLLPAGLGEGATAYHKTGDIGTMLADAGLIDVPTGKRYIASIM 417
>gi|170726672|ref|YP_001760698.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella woodyi ATCC 51908]
gi|169812019|gb|ACA86603.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella woodyi ATCC 51908]
Length = 481
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
SN+ + ++ Y + T V+ E D PAS KL+TA
Sbjct: 27 FSNLLSLIKPPHSHTALYA--KNLVTDQVVFEENADTLLLPASTQKLLTAVAA 77
>gi|94502821|gb|ABF29639.1| beta-lactamase [Escherichia coli]
Length = 220
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 28/190 (14%), Positives = 49/190 (25%), Gaps = 12/190 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 24 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 81
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
TM+L + S N + + + L T
Sbjct: 82 KHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLN 141
Query: 156 HGVV-QHGHYTTARDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ T+ R MA D + +KG A
Sbjct: 142 TAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLP 197
Query: 210 FLGADGMKTG 219
G KTG
Sbjct: 198 ASWVVGDKTG 207
>gi|284046612|ref|YP_003396952.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Conexibacter woesei DSM 14684]
gi|283950833|gb|ADB53577.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Conexibacter woesei DSM 14684]
Length = 458
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ S + ++ ++D + G V+ ++ D AS+TKL T
Sbjct: 41 LRSTLAAQIAKGP--SAAGAYVVDLSDGRVVFDDRSDRLRLSASVTKLYTTSTAL 93
>gi|94269574|ref|ZP_01291501.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [delta
proteobacterium MLMS-1]
gi|93451165|gb|EAT02086.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [delta
proteobacterium MLMS-1]
Length = 428
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFS 67
G ++A + D P PAS K+ TA +
Sbjct: 40 GRLLAAHNLDRPLTPASTWKIATALLALE 68
>gi|51245728|ref|YP_065612.1| hypothetical protein DP1876 [Desulfotalea psychrophila LSv54]
gi|50876765|emb|CAG36605.1| hypothetical protein DP1876 [Desulfotalea psychrophila LSv54]
Length = 567
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ + + D TG I + + + AS+ K A F ++ +
Sbjct: 333 EATGWMVFDLATGESIVDINANRKFQTASMIKPFVALAFFHKVQAGQLTY 382
>gi|254459462|ref|ZP_05072878.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacterales bacterium HTCC2083]
gi|206676051|gb|EDZ40538.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacteraceae bacterium HTCC2083]
Length = 503
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
S+ + A+ + + D +TG ++ PAS K +TA
Sbjct: 53 ASSSKALIDAAQLGGAVGFAVADLSTGKLLETKNKAIGLPPASTAKAITALYALDA 108
>gi|94313361|ref|YP_586570.1| beta-lactamase class A-like protein [Cupriavidus metallidurans
CH34]
gi|93357213|gb|ABF11301.1| Beta-lactamase class A-like protein [Cupriavidus metallidurans
CH34]
Length = 293
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 9/64 (14%), Positives = 18/64 (28%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ + L G V+ E + AS+ KL + + + + L
Sbjct: 24 TALAPLLAGTQARVAISLRLADGKVVLEREAERVQPSASIIKLPILFTLLEQVAQGHLQL 83
Query: 77 TTPI 80
Sbjct: 84 EQRF 87
>gi|304408832|ref|ZP_07390453.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica OS183]
gi|307302835|ref|ZP_07582590.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica BA175]
gi|304352653|gb|EFM17050.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica OS183]
gi|306913195|gb|EFN43617.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica BA175]
Length = 502
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
S I+ + +D ++ VI + + PAS KL+TA
Sbjct: 38 SLSQAVSKISPRHSQIALLAMDMSSNQVIFSQQAETLFIPASTQKLLTAVSAM 90
>gi|217973250|ref|YP_002358001.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica OS223]
gi|217498385|gb|ACK46578.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica OS223]
Length = 502
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
S I+ + +D ++ VI + + PAS KL+TA
Sbjct: 38 SLSQAVSKISPRHSQIALLAMDMSSNQVIFSQQAETLFIPASTQKLLTAVSAM 90
>gi|18844708|gb|AAL78276.1| K1 beta-lactamase [Klebsiella oxytoca]
Length = 290
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 42/285 (14%), Positives = 79/285 (27%), Gaps = 24/285 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPD 48
+ L+ A+ +L + A+ + L++ + + D
Sbjct: 8 KTALMAAAVPLLLASGSLWASADAIQQKLADLEKRSGGRLGVALINTADDSQTLY--RGD 65
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M A V + ++ + I K+ + S MTL
Sbjct: 66 ERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITEKHLQSGMTLAELS 125
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N + L EK F Q + + + L + +A + T
Sbjct: 126 AAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALNSAIPGDKRDTTTP 185
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L + Q+ + A G KTG
Sbjct: 186 LAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWVVGDKTGAGDYGTT 245
Query: 227 NIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G
Sbjct: 246 NDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 290
>gi|126180036|ref|YP_001048001.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Methanoculleus marisnigri JR1]
gi|125862830|gb|ABN58019.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Methanoculleus marisnigri JR1]
Length = 531
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
DT+TG V+ D + P S TK+ T
Sbjct: 78 DTSTGEVLLSMNGDRLFTPGSTTKVFTVSTALD 110
>gi|94264598|ref|ZP_01288382.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [delta
proteobacterium MLMS-1]
gi|93454952|gb|EAT05189.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [delta
proteobacterium MLMS-1]
Length = 428
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFS 67
G ++A + D P PAS K+ TA +
Sbjct: 40 GRLLAAHNLDQPLTPASTWKIATALLALD 68
>gi|163801236|ref|ZP_02195135.1| beta-lactamase [Vibrio sp. AND4]
gi|159174725|gb|EDP59525.1| beta-lactamase [Vibrio sp. AND4]
Length = 283
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 31/212 (14%), Positives = 70/212 (33%), Gaps = 3/212 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+ DT T + D + S K + + S + + + K+
Sbjct: 41 VWDTQTDER-WDYRGDERFPMMSTFKTLACATMLSNMDNETLDKNATAKVEKHNMVVWSP 99
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSAT 150
G T+ +++A + ++ S N A + S+ + KF++ + + L
Sbjct: 100 VMDRMAGQTIRIEHACEAAMLMSDNTAANIVLRSIDGPQGVTKFLRSIGDKITRLDRFEP 159
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
A+ + T + L+ +++D Y Q+K K + +V
Sbjct: 160 TLNEANPGDKQDTTTPNAMVNTLNTLLESDALSYESRIQLKIWMQDNKVSDSLIRSVLPK 219
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ ++G I A + + I +
Sbjct: 220 GWSIADRSGAGGFGSRGITAMVWKENHRPIYI 251
>gi|160875500|ref|YP_001554816.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica OS195]
gi|160861022|gb|ABX49556.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica OS195]
gi|315267687|gb|ADT94540.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica OS678]
Length = 502
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 14 SNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+++ +S L +D ++ VI + + PAS KL+TA
Sbjct: 37 TSLSQAVSKISPRHSQIALLTMDMSSNQVIFSQQAETLFIPASTQKLLTAVSAM 90
>gi|83716841|ref|YP_438573.1| beta-lactamase [Burkholderia thailandensis E264]
gi|167615056|ref|ZP_02383691.1| beta-lactamase precursor [Burkholderia thailandensis Bt4]
gi|257141632|ref|ZP_05589894.1| beta-lactamase precursor [Burkholderia thailandensis E264]
gi|83650666|gb|ABC34730.1| beta-lactamase precursor [Burkholderia thailandensis E264]
Length = 269
Score = 42.3 bits (97), Expect = 0.11, Method: Composition-based stats.
Identities = 34/272 (12%), Positives = 72/272 (26%), Gaps = 18/272 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 1 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLLQ-DGDCSRRASPASTFK 56
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ ++ + + + + +
Sbjct: 57 IAISLMGYDAGFLR--NEHDPVLPYRDTYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 114
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
+ A A + + KN GL + ++ + M
Sbjct: 115 HLGAQRFARYAKAFDYGNADVSGDPGKNNGLDRSWIGSSLQISPLEQLRFLSKMLNRKLP 174
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYP------NTNWAVGTFLGADGMK--TGFTCASGFNI 228
+ + G A GT A G G+ +
Sbjct: 175 VSPNAVDMTERIVEATTLADGTVVHGKTGAAYPLLADGTRDWAHGFGWFVGWITRGNQTL 234
Query: 229 VASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
V + + D+ V G R + LL
Sbjct: 235 VFARLMQDERKQPVSTGIRTREAFLRDLPRLL 266
>gi|302870334|ref|YP_003838971.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Micromonospora aurantiaca ATCC 27029]
gi|302573193|gb|ADL49395.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Micromonospora aurantiaca ATCC 27029]
Length = 588
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ D +TG + + D P PAS+TKL T V +
Sbjct: 202 VADVSTGQALYGSGQDTPTVPASVTKLATGVAVLAAR 238
>gi|159040241|ref|YP_001539494.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Salinispora arenicola CNS-205]
gi|157919076|gb|ABW00504.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Salinispora arenicola CNS-205]
Length = 485
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ D TG + D PAS+TKL+T V +
Sbjct: 99 VTDVVTGATLYGRGADDGTVPASVTKLVTGATVLAARGPGH 139
>gi|15718691|gb|AAC98092.2| extended spectrum beta lactamase [Klebsiella pneumoniae]
Length = 291
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 34/271 (12%), Positives = 65/271 (23%), Gaps = 32/271 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + I + + + + + +D +G + D
Sbjct: 1 MRYIRLCIISLLATLPLAVHASPQPLEQIKLSESQLSGRVGMIEMDLASGRTLTAWRADE 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L IT + S MT+
Sbjct: 61 RFPMMSTFKVVLCGAVLARVDAGDEQLERKITHRQQDLVDYSPVSEKHLADGMTVGELCA 120
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV--------VQH 161
I S N A + + + N+ +
Sbjct: 121 AAITMSDNSAANLLL-ATVGGPAGLTAFLRQIGDNVTRLDRWETDRWETELNEALPGDAR 179
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
T A A L + + Q+ + + +V KTG
Sbjct: 180 DTTTPASMAATLRKLLTSQRLSARSQRQLLQWMVDDRVAGPLIRSVLPAGWFIADKTG-- 237
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTR 252
A + I +LG ++ R
Sbjct: 238 ----------AGERGARGIVALLGPNNKAER 258
>gi|60416717|emb|CAI43423.1| beta-lactamase [Klebsiella oxytoca]
Length = 290
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 43/285 (15%), Positives = 80/285 (28%), Gaps = 24/285 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPD 48
+ L+ A+ +L + A+ + L++ + + D
Sbjct: 8 KSALMAAAVPLLLASGSLWASADAIQQKLADLEKRSGGRLGVALINTADDSQTLY--RGD 65
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M A V + ++ + I K+ + S MTL
Sbjct: 66 ERFAMCSTGKVMAAAAVLKQSESHPDVVNKRLEIKKSDLVVWSPITEKHLQSGMTLAELS 125
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N + L EK F Q + + + L + +A + T
Sbjct: 126 AAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALNSAIPGDKRDTTTP 185
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L + Q+ + A A G KTG
Sbjct: 186 LAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWAVGDKTGAGDYGTT 245
Query: 227 NIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G
Sbjct: 246 NDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 290
>gi|95931405|ref|ZP_01314114.1| Peptidoglycan glycosyltransferase [Desulfuromonas acetoxidans DSM
684]
gi|95132542|gb|EAT14232.1| Peptidoglycan glycosyltransferase [Desulfuromonas acetoxidans DSM
684]
Length = 620
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 19/161 (11%), Positives = 37/161 (22%), Gaps = 44/161 (27%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAE------------------------NYPDHPW--- 51
A + +LD N+G ++A PDHP
Sbjct: 253 ATEEAFDEQAGAAVVLDVNSGDILAMVSRPAFDPALFARGISQEEWQALVKNPDHPLQAK 312
Query: 52 ------NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P S K++TA ++ + T
Sbjct: 313 AISGQYPPGSTYKMVTALAALRAG-----------VVTPDELIDCKGRITLGSRDFRCWK 361
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ + + ++ M+ ++ LG
Sbjct: 362 KTGHGPTNLNKALRESCDVWFYEISLRLGIERMSTMARELG 402
>gi|194366908|ref|YP_002029518.1| beta-lactamase [Stenotrophomonas maltophilia R551-3]
gi|194349712|gb|ACF52835.1| Beta-lactamase [Stenotrophomonas maltophilia R551-3]
Length = 303
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 41/260 (15%), Positives = 69/260 (26%), Gaps = 29/260 (11%)
Query: 2 RQFL------VIIAMAMLSNIFPFLSIAETNKLPYYT--------------------LLD 35
R+FL V ++A+ LLD
Sbjct: 5 RRFLQFSGAAVASSLALPLLARATGKATANVPAEAAITAATDFAALEKACAGRLGVTLLD 64
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
T +G I + D + S K + A V S + + A+L T + + +
Sbjct: 65 TASGRRI-GHRQDERFPMCSTFKSVLAATVLSQAERRPALLDTRVPVRDADLLSHAPVTR 123
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
G MT+ + + I+ S N A + F++ +
Sbjct: 124 RHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDALSRSDRLEPELN 183
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+ T A A L + + Q Q+ I + A
Sbjct: 184 SFAKDDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGKRWR 243
Query: 214 DGMKTGFTCASGFNIVASAI 233
G KTG N +
Sbjct: 244 VGDKTGSNGEDARNDIGVLW 263
>gi|23264040|gb|AAL78161.1| class A beta-lactamase [Klebsiella oxytoca]
Length = 290
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 45/285 (15%), Positives = 80/285 (28%), Gaps = 24/285 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPD 48
+ L+ A+ +L + A+T + L++ + + D
Sbjct: 8 KSALMAAAVPLLLASGSLWASADTLQQKLADLEKRSGGRLGVALINTADDSQTLY--RGD 65
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M A V + ++ + I K+ + S MTL
Sbjct: 66 ERFAMCSTGKVMAAAAVLKQSESHPDVVNKRLEIKKSDLVVWSPITEKHLQSGMTLAELS 125
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F Q + + + L +A + T
Sbjct: 126 AAALQYSDNTAMNKIIGYLGGPEKVTAFAQSIGDVTFRLDRMEPALNSAIPGDKRDTTTP 185
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L + Q+ + A A G KTG
Sbjct: 186 LAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWAVGDKTGGGDYGTT 245
Query: 227 NIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G
Sbjct: 246 NDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 290
>gi|74474880|dbj|BAE44428.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 290
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 39/250 (15%), Positives = 66/250 (26%), Gaps = 23/250 (9%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYT--------------------LLDTNTGHVIAEN 45
V ++A+ LLDT +G I +
Sbjct: 4 VASSLALPLLAHATGKATANVPAEAAITAATDFAALEKACAGRLGVTLLDTASGRRI-GH 62
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S K + A V S + + A+L T + + + G MT+
Sbjct: 63 RQDERFPMCSTFKSVLAATVLSQAERRPALLDTRVPVRDADLLSHAPVTRRHAGKDMTVR 122
Query: 106 NALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ + I+ S N A + F++ + +
Sbjct: 123 DLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDALSRSDRLEPELNSFAKGDPRDT 182
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
T A A L + + Q Q+ I + A G KTG
Sbjct: 183 TTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGKRWRVGDKTGSNGE 242
Query: 224 SGFNIVASAI 233
N +A
Sbjct: 243 DARNDIAVLW 252
>gi|257142784|ref|ZP_05591046.1| class A beta-lactamase precursor [Burkholderia thailandensis E264]
Length = 289
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 47/276 (17%), Positives = 83/276 (30%), Gaps = 22/276 (7%)
Query: 1 MRQFLVIIAMA--MLSNIFPFLSIAETNKLP--------------YYTLLDTNTGHVIAE 44
MR+ L+I A++ ++ P A + LDT TG I
Sbjct: 1 MRRSLLIAAVSAPLVGACAPLRDNARNVAAEQQLRELESTFDGRLGFVALDTATGARI-A 59
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
+ D + S K M + V + A+L I +K + G+ MT+
Sbjct: 60 HRADERFPFCSTFKTMLSAAVLARSAGDAALLQRRIPYAKRDLVRYSPITEKHVGAGMTV 119
Query: 105 DNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ S N A + + + + + + + L T A +
Sbjct: 120 AELCAATLQYSDNTAANLLIALLGGPQAVTAYARSIGDATFRLDRRETELNTAIPGDERD 179
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
T A A + + D Q+ + K A KTG
Sbjct: 180 TTTPAAMAASVRRLLVGDALGTAQRAQLNAWMLGNKTGDARIRAGVPAGWRVADKTGTGD 239
Query: 223 ASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSA 257
N + A D+ ++ V+ +RN +
Sbjct: 240 YGTGNDIGVAYPPDRAPIVFVV--YTTMRSRNAQAR 273
>gi|269925719|ref|YP_003322342.1| beta-lactamase [Thermobaculum terrenum ATCC BAA-798]
gi|269789379|gb|ACZ41520.1| beta-lactamase [Thermobaculum terrenum ATCC BAA-798]
Length = 274
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 30/222 (13%), Positives = 61/222 (27%), Gaps = 13/222 (5%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-YPPSN 93
D G + D +N AS+ K+ +F + E L + +
Sbjct: 23 DLTQGRELF-INADETFNTASVIKVPIMIELFRRVYEDNVSLDDRLILEDRFRTGGSGIL 81
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHF 152
F+ G +TL + +I S N + + + + + + L
Sbjct: 82 KEFRSGLQLTLWDLCVAMIALSDNVATNMLIDYLGIDAINRCMDSLGAHNTRLHRMVGFK 141
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA--VGTF 210
+ TT RDM ++ ++ + + + N +
Sbjct: 142 SIKPDQPKGLGRTTPRDMMMIFQKLAEGNVISESASEEMIAILAKQHDRNMIPRLLPIDY 201
Query: 211 LGADG--------MKTGFTCASGFNIVASAIQGDQSLIAVIL 244
G KTG ++ + + IL
Sbjct: 202 DSVSGDYDSAIVANKTGAVDGVRNDVALIRFADGRQWVICIL 243
>gi|60416703|emb|CAI43416.1| beta-lactamase [Klebsiella oxytoca]
gi|60416705|emb|CAI43417.1| beta-lactamase [Klebsiella oxytoca]
gi|60416707|emb|CAI43418.1| beta-lactamase [Klebsiella oxytoca]
gi|60416711|emb|CAI43420.1| beta-lactamase [Klebsiella oxytoca]
Length = 290
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 44/285 (15%), Positives = 78/285 (27%), Gaps = 24/285 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPD 48
+ L+ A+ +L + A+ + L++ + + D
Sbjct: 8 KTALMAAAVPLLLASGSLWASADAIQQKLADLEKHSGGRLGVALINTADDSQTLY--RGD 65
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M A V + ++ + I K + S MTL
Sbjct: 66 ERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKADLVVWSPITEKHLQSGMTLAELS 125
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F Q + + + L +A + T
Sbjct: 126 AAALQYSDNTAMNKIIGYLGGPEKVTAFAQSIGDVTFRLDRMEPALNSAIPGDKRDTTTP 185
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L + Q+ + A A G KTG
Sbjct: 186 LAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWAVGDKTGAGDYGTT 245
Query: 227 NIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G
Sbjct: 246 NDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 290
>gi|116491089|ref|YP_810633.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
gi|116091814|gb|ABJ56968.1| D-alanyl-D-alanine carboxypeptidase [Oenococcus oeni PSU-1]
Length = 249
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 32/206 (15%), Positives = 75/206 (36%), Gaps = 7/206 (3%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ N G +I++ + + L++L+ Y V S ++ KK L TP+ +S+ S
Sbjct: 8 AQSSLFAELN-GKIISKKNVRKTFPISDLSRLVLIYEVLSAIRSKKISLDTPLIVSEKIS 66
Query: 88 EYPPSN----STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + F+ G T+ A+++L++ S A + E + +K+ K
Sbjct: 67 LFSKKDRSAAMHFQIGEFFTVKQAIEILLIMSEKSAAYLLIEKIFGNLEKWRSETARFLK 126
Query: 144 NLGLSA--THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ + + +A + + ++ DFP+ + Q K + +
Sbjct: 127 QEKIDGLIYEPVGLMSGEGRENLLSAISILKVINKLVNDFPKILAMTQKKQFIFQSDRQV 186
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFN 227
+ ++ A +
Sbjct: 187 QFYRNPSFKQRINNLQISAFFAEKYQ 212
>gi|1524368|emb|CAA63714.1| extended-spectrum beta-lactamase [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|124248221|emb|CAL64954.1| PER-2 beta-lactamase [Citrobacter freundii]
Length = 308
Score = 42.3 bits (97), Expect = 0.12, Method: Composition-based stats.
Identities = 29/225 (12%), Positives = 71/225 (31%), Gaps = 17/225 (7%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L +T+++ A + K
Sbjct: 62 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQSVTVNRAAVLQNTWSPMMKDHQGDEFT 121
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ----- 160
A++ L+ S + + L + Q ++ ++LG+ + +
Sbjct: 122 VAVQQLLQYSVSHSDNVACDLLFELV-GGPQALHAYIQSLGVKEAAVVANEAQMHADDQV 180
Query: 161 -HGHYTTARDMAILSWRIKTDFP--------QYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ ++T+ + A + + + + + + K V
Sbjct: 181 QYQNWTSMKAAAQVLQKFEQKKQLSETSQALLWKWMVETTTGPQRLKGLLPAGTIVAHKT 240
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT-RNKV 255
G G++ G T A+ + + L+ + + R
Sbjct: 241 GTSGVRAGKTAATNDA-GVIMLPDGRPLLVAVFVKDSAESERTNE 284
>gi|254474823|ref|ZP_05088209.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Ruegeria sp. R11]
gi|214029066|gb|EEB69901.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Ruegeria sp. R11]
Length = 494
Score = 41.9 bits (96), Expect = 0.12, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D TG + P PAS+ K +TA
Sbjct: 63 VADAKTGLRLEAEGAQTPLPPASVAKALTALYALD 97
>gi|291008570|ref|ZP_06566543.1| beta-lactamase precursor [Saccharopolyspora erythraea NRRL 2338]
Length = 270
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 4/225 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
++ TG + ++ D + S K A + + I ++
Sbjct: 31 VNVRTGREL-KHRADERFAMCSTFKTYAAGALLAAHPLAGGYFDKVIRYTRADLRPNSPV 89
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + + MT+ + I +S N + F + + + + L
Sbjct: 90 TETRVDTGMTVAELCEAAITRSDNAAGNLLLAELGGPAAIAPFARSIGDPTTRLDRWEVE 149
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A + T A A + D Q+K I A
Sbjct: 150 LNTAIPGDERDTTTPAGIAAGYRAMVVGDALGAPEREQLKKWLIANTTGGERIRAGLPPN 209
Query: 212 GADGMKTGF-TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
G KTG + ++ + + +++ IL + R
Sbjct: 210 WVTGDKTGSGDYGTANDVAVTWTESGDAIVIAILTSKSAPDRKYD 254
>gi|134097960|ref|YP_001103621.1| beta-lactamase precursor [Saccharopolyspora erythraea NRRL 2338]
gi|133910583|emb|CAM00696.1| beta-lactamase precursor [Saccharopolyspora erythraea NRRL 2338]
Length = 307
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 30/225 (13%), Positives = 63/225 (28%), Gaps = 4/225 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
++ TG + ++ D + S K A + + I ++
Sbjct: 68 VNVRTGREL-KHRADERFAMCSTFKTYAAGALLAAHPLAGGYFDKVIRYTRADLRPNSPV 126
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + + MT+ + I +S N + F + + + + L
Sbjct: 127 TETRVDTGMTVAELCEAAITRSDNAAGNLLLAELGGPAAIAPFARSIGDPTTRLDRWEVE 186
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A + T A A + D Q+K I A
Sbjct: 187 LNTAIPGDERDTTTPAGIAAGYRAMVVGDALGAPEREQLKKWLIANTTGGERIRAGLPPN 246
Query: 212 GADGMKTGF-TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
G KTG + ++ + + +++ IL + R
Sbjct: 247 WVTGDKTGSGDYGTANDVAVTWTESGDAIVIAILTSKSAPDRKYD 291
>gi|46309216|emb|CAG25831.1| beta-lactamase [Klebsiella pneumoniae]
Length = 263
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 37/234 (15%), Positives = 63/234 (26%), Gaps = 6/234 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
Y +D +G ++A + S K++ V + + L I +
Sbjct: 29 GYVEMDLASGRMLAAWRASERFPLMSTFKVLLCGAVLARVDAGDEQLDRRIHYRQQDLVD 88
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGL 147
S MT+ I S N + + F++ + + L
Sbjct: 89 YSPVSEKHLADGMTVGELCAAAITMSDNSAGNLLLKSVGGPAGLTTFLRQIGDNVTRLDR 148
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
T A T A L + T Q+ + + AV
Sbjct: 149 WETELNEALPGDVRDTTTPASMATTLRKLLTTPSLSARSQQQLLQWMVDDQVAGPLIRAV 208
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQ--SLIAVILG--ALDRNTRNKVSA 257
KTG IVA + ++ + L A RN+ A
Sbjct: 209 LPAGWFIADKTGAGERGSRGIVALLGPDGKAERIVVIYLRDTAATMAERNQQIA 262
>gi|78214775|gb|ABB36576.1| carbenicillinase [Morganella morganii]
Length = 288
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 13/140 (9%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL+ ++ + S +F +I + +LDT G + +
Sbjct: 2 KFLLAFSLLIPSVVFASTSKFQQVEQDVKAIEVSLSARIGVSVLDTQNGE-YWDYNGNQR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K T + I K + G +TLD+A
Sbjct: 61 FPKTSTFKTIACAKLLYDAEQGKVNPNTTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 120
Query: 111 LIVKSANDIAVAIAESLCKT 130
+ S N A I ++C
Sbjct: 121 TMTTSDNTAANIILSAVCGP 140
>gi|543895|sp|P35392|BLAC_STRFR RecName: Full=Beta-lactamase; AltName: Full=Penicillinase; Flags:
Precursor
gi|153187|gb|AAA26709.1| beta-lactamase precursor (gtg start codon) (EC 3.5.2.6)
[Streptomyces fradiae]
Length = 306
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 27/218 (12%), Positives = 54/218 (24%), Gaps = 7/218 (3%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
DT TG +A D + AS+ K + V L +L + + + +
Sbjct: 58 GAFAYDTGTGRTVAYR-ADERFPIASMFKTIAVAAVLRDLDRDGEVLARRVHYTADYVKR 116
Query: 90 PPSNSTFKKGST----MTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSK 143
+ MT+ + + +S N A + +F + + +
Sbjct: 117 SGYSPVTGLPENVANGMTVAELCEATLTRSDNTAANLLLRDLGGPTAVTRFCRSVGDHVT 176
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
L +A + I D ++ + +
Sbjct: 177 RLDRWEPELNSAEPGRVTDTTSPRAIGRTYGRLILGDLLAAHDRERLTRWMLDNRTSDER 236
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
KTG N A + +
Sbjct: 237 FRKGLPADWLLADKTGGGDYGTNNDAGVAWPPGRPPVV 274
>gi|228958767|ref|ZP_04120479.1| Beta-lactamase [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228800906|gb|EEM47811.1| Beta-lactamase [Bacillus thuringiensis serovar pakistani str.
T13001]
Length = 312
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 35/221 (15%), Positives = 58/221 (26%), Gaps = 6/221 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I + + AS K + A V+ L IT +K
Sbjct: 75 IDTGTNQTI-SYRSNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++HM + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNT 251
G K+G N +A ++ +I IL + D
Sbjct: 252 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKE 292
>gi|229173190|ref|ZP_04300739.1| Beta-lactamase [Bacillus cereus MM3]
gi|228610274|gb|EEK67547.1| Beta-lactamase [Bacillus cereus MM3]
Length = 312
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I P+ + AS K + A V+ + L IT +K
Sbjct: 75 IDTGTNQTI-SYRPNERFAFASTYKALAAGVLLQQNSTE--KLNEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N + K +K ++ M + T
Sbjct: 132 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFNKIGGPKGYEKALRQMGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + G A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAHKRNILTGWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 252 WIVADKSGAGSYGTRNDIAIVCPPNRAPIIIAILSSKDEKEATYD 296
>gi|315301013|ref|ZP_07872340.1| beta-lactamase,putative [Listeria ivanovii FSL F6-596]
gi|313630617|gb|EFR98423.1| beta-lactamase,putative [Listeria ivanovii FSL F6-596]
Length = 259
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 26/235 (11%), Positives = 59/235 (25%), Gaps = 14/235 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
E + D ++ + + AS+ KL F + + + L T I +S
Sbjct: 12 EMIDSKALYISDEK--QMLFAENENQLYTAASVIKLPIYLYFFEKISKGELDLQTEIQLS 69
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ +L + + E +Q +
Sbjct: 70 SDSVVAGAGIIQILPQK-----RTWRLEELLHLMIAISDNTATNQLIELASLQELQAWLG 124
Query: 144 NLGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
G + + + G +A+ ++ + + +
Sbjct: 125 KKGWEKSVRIERKMMDFKSAGENKITAKLAVTIFQEMMELTKKYPNLTETIRRPFLNQQH 184
Query: 202 NTNWAVGTFL-GADG----MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+N G G KTG ++ QG+ +A +
Sbjct: 185 RSNLTGTLEEAGIAGLQMLNKTGELKDIQHDVAIFEYQGEIRFVAALTNNTGLEA 239
>gi|254787003|ref|YP_003074432.1| peptidoglycan synthetase FtsI [Teredinibacter turnerae T7901]
gi|237686982|gb|ACR14246.1| peptidoglycan synthetase FtsI [Teredinibacter turnerae T7901]
Length = 554
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 24/89 (26%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPAS 55
+ K ++D TG V+A P+ + P S
Sbjct: 221 LASAVKKQGAKSGSVVVMDVKTGEVLAMANQPAYNPNDRSSIKPAQLRNRALTDVFEPGS 280
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISK 84
K +T K L I S
Sbjct: 281 TVKPLTMMAALESGKYH---LNDTINTSP 306
>gi|312862915|ref|ZP_07723155.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
gi|311101775|gb|EFQ59978.1| conserved hypothetical protein [Streptococcus vestibularis F0396]
Length = 80
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
ET + L+D NTG ++ ++ D +PAS
Sbjct: 38 ATETYRPKSSLLIDANTGDILWQDNIDEVRDPAS 71
>gi|220910129|ref|YP_002485440.1| beta-lactamase [Cyanothece sp. PCC 7425]
gi|219866740|gb|ACL47079.1| beta-lactamase [Cyanothece sp. PCC 7425]
Length = 442
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 30/213 (14%), Positives = 63/213 (29%), Gaps = 11/213 (5%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPS 92
LD + G+ + D + AS+ KL F + K L +T+
Sbjct: 203 LDMDNGN-YVDLNGDKIFPAASIIKLPILVAFFQAVDAGKVRLDEKLTLRPELFASGSGE 261
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ + + +I+ S N I + L +N ++ GL
Sbjct: 262 MQFQRPWTQFSAQYTAAQMIIISDNTATNLILKRL-----GGPGVLNQQFRSWGLKQ--T 314
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN-WAVGTFL 211
+ + + T +++ D + + + ++ N A G
Sbjct: 315 VIRNWLPDLSGTNTTTARELVNLLTLLDQGKLLTPSSREKALAILRQTKNRKLLAAGLGP 374
Query: 212 G-ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
G KTG + + + +A +
Sbjct: 375 GAVFAHKTGDIGFMLGDAGMIQMPTGKRYMAAV 407
>gi|304383450|ref|ZP_07365913.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella marshii DSM 16973]
gi|304335414|gb|EFM01681.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella marshii DSM 16973]
Length = 440
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D V+ PAS K++TA
Sbjct: 98 MVYDLTADSVLYRRNERQLLRPASTMKIVTAVAALD 133
>gi|311745219|ref|ZP_07719004.1| beta-lactamase [Algoriphagus sp. PR1]
gi|126577743|gb|EAZ81963.1| beta-lactamase [Algoriphagus sp. PR1]
Length = 360
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 23/101 (22%)
Query: 1 MRQFLV-IIAMAMLS--------NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYP---- 47
M++ I+ + ++ + L+ AE L+ G V+ E
Sbjct: 1 MKKLFTPILFLCLVIHPILGQERILKDALANAEKEDFSGVILV-AQNGKVLFEKAIGMRS 59
Query: 48 ---------DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ AS++K TA ++ ++
Sbjct: 60 FEDQIPLKKHDVFEMASVSKQFTAMMIMLCQEKGLLDYDDR 100
>gi|91776627|ref|YP_546383.1| peptidoglycan synthetase FtsI [Methylobacillus flagellatus KT]
gi|91710614|gb|ABE50542.1| peptidoglycan synthetase FtsI [Methylobacillus flagellatus KT]
Length = 583
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 22/84 (26%), Gaps = 21/84 (25%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPAS 55
K +LD TG V+A P++P + P S
Sbjct: 243 LAAAVTEHKAKAGSAVVLDAKTGEVLAMVNVPSYNPNNPVNLAGGRSRNRAIVDTFEPGS 302
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTP 79
K TA + K L
Sbjct: 303 TLKPFTAAAALDSGQYKPNTLIDT 326
>gi|20090817|ref|NP_616892.1| serine-type D-Ala-D-Ala carboxypeptidase [Methanosarcina
acetivorans C2A]
gi|19915883|gb|AAM05372.1| serine-type D-Ala-D-Ala carboxypeptidase [Methanosarcina
acetivorans C2A]
Length = 568
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 32 TLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
L+ D TG V+ + P+ + P S TKL T
Sbjct: 96 ILVEDLETGEVVYQLNPEKMFIPGSTTKLYTGAAALD 132
>gi|247720643|gb|ACT09140.1| BEL-3 [Pseudomonas aeruginosa]
Length = 283
Score = 41.9 bits (96), Expect = 0.13, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 67/216 (31%), Gaps = 5/216 (2%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP-ITISKNASEYPPSNST 95
G++I + + S KL A +V S + + S EY P+
Sbjct: 44 ENGNLIQGYRANERFAMCSTFKLPLAALVLSRIDAGEENPERKLHYDSAFLEEYAPAAKR 103
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATHFM 153
+ MT+ A++ + S N A + + + K+ + + + L +
Sbjct: 104 YVATGYMTVTEAIQSALQLSDNAAANLLLKEVGGPPLLTKYFRSLGDKVSRLDRIESTLN 163
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+ T +S I D Y Q++ L I + T A
Sbjct: 164 TNTPGDERDTTTPMSMAQTVSKLIFGDTLTYKSKGQLRRLLIGNQTGDKTIRAGLPDSWV 223
Query: 214 DGMKTG-FTCASGFNIVASAIQGDQSLI-AVILGAL 247
G KTG ++ + + +V A
Sbjct: 224 TGDKTGSCANGGRNDVAFFITTAGKKYVLSVYTNAP 259
>gi|160888097|ref|ZP_02069100.1| hypothetical protein BACUNI_00505 [Bacteroides uniformis ATCC
8492]
gi|156862408|gb|EDO55839.1| hypothetical protein BACUNI_00505 [Bacteroides uniformis ATCC
8492]
Length = 479
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D G + D PAS KL+T
Sbjct: 51 VYDLTAGKPLYGYQADKLSRPASTMKLLTTITAL 84
>gi|317478124|ref|ZP_07937299.1| D-Ala-D-Ala carboxypeptidase 3 family protein [Bacteroides sp.
4_1_36]
gi|316905722|gb|EFV27501.1| D-Ala-D-Ala carboxypeptidase 3 family protein [Bacteroides sp.
4_1_36]
Length = 479
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D G + D PAS KL+T
Sbjct: 51 VYDLTAGKPLYGYQADKLSRPASTMKLLTTITAL 84
>gi|221229301|gb|ABO61005.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 301
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 55/203 (27%), Gaps = 2/203 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K + V S + L T + I+
Sbjct: 59 VLNTGNGRRIGGHRQDERFPMCSTFKSLLVAHVLSLADAGRVSLDTRVPIAGKDLLSYAP 118
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 119 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSITRYDRNEP 178
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A L+ + Q Q I + A
Sbjct: 179 DVNLFVKGDPRDTTSPAAMATSLARFAVGNGLQPASRQQFADWLIDNQTGDACLRAGLGT 238
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 239 RWRVGDKTGSNGDDTRNDIAVLW 261
>gi|107123297|gb|ABF83597.1| extended-spectrum beta-lactamase PER-1 [Acinetobacter baumannii]
Length = 287
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 21/229 (9%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L + +++ K
Sbjct: 56 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 115
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ L+ S + + L + +++ +++G+ T +
Sbjct: 116 VPVQQLLQYSVSHSDNVACDLLFELV-GGPAALHDYIQSMGIKETAVVANEAQ--MHADD 172
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------------- 211
+ S + + + + +
Sbjct: 173 QVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 232
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G G+K G T A+ ++ + + L+ + +R +
Sbjct: 233 KTGTSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 280
>gi|134133931|gb|ABO61023.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 298
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 50/188 (26%), Gaps = 2/188 (1%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D + S K M A V S + A+L + + + + G MT+ +
Sbjct: 71 DERFPMCSTFKSMLAATVLSQAERAPALLDRRVPVREADLLSHAPVTRRHAGKDMTVRDL 130
Query: 108 LKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ I+ S N A + F++ + + T
Sbjct: 131 CRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDAVSRSDRLEPETNSFAEGDPRDTTT 190
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
A L + Q Q+ I + A G KTG
Sbjct: 191 PAAMAGSLQRVVLGKALQPASRQQLADWLIDNETGDACLRAGLGKRWRVGDKTGSNGEDA 250
Query: 226 FNIVASAI 233
N +A
Sbjct: 251 RNDIAVLW 258
>gi|270159229|ref|ZP_06187885.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Legionella longbeachae D-4968]
gi|289165945|ref|YP_003456083.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Legionella longbeachae NSW150]
gi|269987568|gb|EEZ93823.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Legionella longbeachae D-4968]
gi|288859118|emb|CBJ13047.1| putative D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Legionella longbeachae NSW150]
Length = 596
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 10/69 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDHP 50
M++ L+ LS++ I ++D +G +
Sbjct: 1 MKKTLISAFFVTLSSVSQSARIQNEVDKLINQINPNVNLGAVVVDLTSGETLYRRNAGRL 60
Query: 51 WNPASLTKL 59
+ PAS KL
Sbjct: 61 YIPASNMKL 69
>gi|238493221|ref|XP_002377847.1| esterase, putative [Aspergillus flavus NRRL3357]
gi|220696341|gb|EED52683.1| esterase, putative [Aspergillus flavus NRRL3357]
Length = 417
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 17/146 (11%)
Query: 32 TLLDTNTGHVIAEN----------YP-----DHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+D ++G +I D + AS+TKL+TA V ++ L
Sbjct: 25 IAID-SSGKIIYHRAAGKASLDDENAPALQTDSLYWIASMTKLVTAIAVMQLVERGIVSL 83
Query: 77 T-TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
TI + + + N L L V+ + + +
Sbjct: 84 DEDVRTIVPEVRDIQILEDIRNDKDSSSESNQLHLKPVQGKITLRNLMCHTAGFVYDSSS 143
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQH 161
+ SK+ G +A F + H
Sbjct: 144 PLLQKWSKSHGRTAYTFCGSMAGYHH 169
>gi|309810906|ref|ZP_07704707.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Dermacoccus sp. Ellin185]
gi|308435212|gb|EFP59043.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Dermacoccus sp. Ellin185]
Length = 465
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 28 LPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
P + D +TG V+ E+ PAS+TKL +A+ +
Sbjct: 90 SPTAVTVRDASTGTVLYEHDSSKATTPASVTKLASAFAI 128
>gi|227510567|ref|ZP_03940616.1| beta-lactamase class A [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190219|gb|EEI70286.1| beta-lactamase class A [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 250
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 31/217 (14%), Positives = 55/217 (25%), Gaps = 14/217 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
+ + ASL KL V L I + ++ T L
Sbjct: 35 NANKAFRSASLIKLAILNDVLDS----HFDLDKEIHVRRDKLVGGAGVLQLLSERTFQLK 90
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ L L+I S N + + ++H+N +G T
Sbjct: 91 DLLALMISVSDNSATNLVIAHI------GMEHVNQYLSKMGFYKTRLNRYLMDTSALESG 144
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD-GMKTGFTCAS 224
+ + H + +Y T G KTG
Sbjct: 145 KDNYTTPAESQRLLEMAITNHPMTKTWFLNQQFRYKLPGDFDETGNGIQVYNKTGEGYQI 204
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
++ LI++ L +R + L +
Sbjct: 205 DHDVAEFVY--GNKLISIALLTFGSRSRMN-TIRLFN 238
>gi|229103106|ref|ZP_04233793.1| Beta-lactamase [Bacillus cereus Rock3-28]
gi|228680295|gb|EEL34485.1| Beta-lactamase [Bacillus cereus Rock3-28]
Length = 312
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 33/225 (14%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I+ + + + AS K + A V+ L I +K
Sbjct: 75 IDTGTNQTISYRH-NERFAFASTYKALAAGVLLQQNSID--TLNEVIKFTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N K +K ++ + + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFHKIGGPKGYEKALRQIGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T + L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIASNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I VIL + D
Sbjct: 252 WIVGDKSGAGSYGTRNDIAIVWPPNRAPIIIVILSSKDEKEATYD 296
>gi|254521974|ref|ZP_05134029.1| beta-lactamase [Stenotrophomonas sp. SKA14]
gi|219719565|gb|EED38090.1| beta-lactamase [Stenotrophomonas sp. SKA14]
Length = 530
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 22/100 (22%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTN-----------TGHVIAEN----- 45
R+ L + A+A+ + + ++ G V+ +
Sbjct: 11 RRGLCMAALAVFPAATAQPADTASLDADVAAVVRAEHLPGLAMAVVENGQVVYRHAEGKR 70
Query: 46 ------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + AS +K MTA ++ +++ + P
Sbjct: 71 GDGGRLDEDTLFKIASNSKAMTAALLARLVQQGRLRWDDP 110
>gi|170738611|ref|YP_001767266.1| peptidoglycan glycosyltransferase [Methylobacterium sp. 4-46]
gi|168192885|gb|ACA14832.1| Peptidoglycan glycosyltransferase [Methylobacterium sp. 4-46]
Length = 600
Score = 41.9 bits (96), Expect = 0.14, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 33/135 (24%), Gaps = 25/135 (18%)
Query: 26 NKLPYYTLLDTNTGHVIA--------------ENYPDH-------PWNPASLTKLMTAYV 64
K +LD NTG V+A PD + S K MT +
Sbjct: 257 AKAAAAMILDVNTGEVLALASLPDFDPNEPADALNPDRINRMNVGVYEMGSTFKAMTLAM 316
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
K ++ + T + ++ S A
Sbjct: 317 ALESGKFTVNSTFD----TRGGVLSWGRQKIHEYHGTNRVITMPEVFTHSSNIGSAKMAL 372
Query: 125 ESLCKTEKKFVQHMN 139
K F++ M
Sbjct: 373 GVGVPGHKAFLKKMG 387
>gi|270295124|ref|ZP_06201325.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. D20]
gi|270274371|gb|EFA20232.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. D20]
Length = 479
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D G + D PAS KL+T
Sbjct: 51 VYDLTAGKPLYGYQADKLSRPASTMKLLTTITAL 84
>gi|332186616|ref|ZP_08388359.1| beta-lactamase family protein [Sphingomonas sp. S17]
gi|332013268|gb|EGI55330.1| beta-lactamase family protein [Sphingomonas sp. S17]
Length = 297
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 25/222 (11%), Positives = 55/222 (24%), Gaps = 9/222 (4%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+LDT +G D + S KL A + + L + S+
Sbjct: 45 GAFVLDTGSGRS-FGWRADERFCHCSTFKLSLAAMALREADAGRLDLMETLAFSRADIVA 103
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
AL + ++++ A + + +
Sbjct: 104 YSPIVEENLDKGKLPILALAQAVQITSDNAAANVLMHRLGGPAALTRFWREIGDAVSRLD 163
Query: 150 THFMNAHGVV--QHGHYTTARDM-AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+ + + + TT R M + + D + +++ + A
Sbjct: 164 GYEPAINVIPPGTQENSTTPRAMAETVRRIVLGDVLRPASRDRLRSWMAATQSGSKRIRA 223
Query: 207 VGTFLGADGMKTGF-----TCASGFNIVASAIQGDQSLIAVI 243
KTG ++ +S + V
Sbjct: 224 GLPADWHGFDKTGTGMRPGIGNKTNDLAVLMPPKGRSPLVVT 265
>gi|197124253|ref|YP_002136204.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Anaeromyxobacter sp. K]
gi|196174102|gb|ACG75075.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Anaeromyxobacter sp. K]
Length = 755
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 15 NIFPFLSIAETNKLPYYTLLDT-NTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ + + L+ +TG V+ PD NPAS KL+T+
Sbjct: 64 ALAAIVDGSPLAGARVGILVSAIDTGEVVYARDPDVLLNPASNVKLVTSAAAL 116
>gi|221229331|gb|ABO61019.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 303
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 60/203 (29%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G I + D + S K M A S + A+L + + +
Sbjct: 62 LLDTASGRRI-GHRQDERFPMCSTFKSMLAATTLSQAERMPALLDRRVPVGEADLLSHAP 120
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +T
Sbjct: 121 VTRRHAGVDMTVRDLCRATIITSGNTAANLLFGVVGGPPAVTAFLRASGDTVSRSDRLEP 180
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + + Q Q+ I + A
Sbjct: 181 ELNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGK 240
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 241 RWRVGDKTGSNGEDARNDIAVLW 263
>gi|260911268|ref|ZP_05917869.1| D-alanyl-D-alanine carboxypeptidase [Prevotella sp. oral taxon 472
str. F0295]
gi|260634641|gb|EEX52730.1| D-alanyl-D-alanine carboxypeptidase [Prevotella sp. oral taxon 472
str. F0295]
Length = 428
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 28/255 (10%), Positives = 57/255 (22%), Gaps = 20/255 (7%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYP 90
+ D + I PAS K++TA L T S
Sbjct: 87 MVYDLDADSAIYRFNEYQTMRPASTMKVITAIAALDKLGGSHQFKTELCYTGSIENRTLT 146
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ + + + I +L + +
Sbjct: 147 GNVYCVGGFDPRFNADDMHAFVESLQKMGVDTIRGTLYADKSMKTTDILGKGWCWDDDNP 206
Query: 151 ------HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ + + + + ++ PQ + +
Sbjct: 207 VLSALVYTRKDVFMDRFMQELRKAGIVLDAFTATGQRPQDATCICTRFHTMDQILMRMMK 266
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA---------VILGALDRNTRNKV 255
+ + A + + +A Q + LI+ + + N V
Sbjct: 267 ESDNLYAEAMFYQIAAATGNKPATAKNAAQVVKRLISKLGLNAAAYNVADGSGLSLYNYV 326
Query: 256 SASL----LSMGFYN 266
SA L L F N
Sbjct: 327 SAELEVAMLRYAFRN 341
>gi|167565646|ref|ZP_02358562.1| class A beta-lactamase [Burkholderia oklahomensis EO147]
Length = 295
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 38/229 (16%), Positives = 67/229 (29%), Gaps = 7/229 (3%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
LDT TG I + D + S K M + + + +L I +K
Sbjct: 54 VALDTATGARI-AHRADERFPFCSTFKTMLSAAILARSAGDATLLQRRIPYAKRDLVSYS 112
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSA 149
+ G MT+ + S N A + + + + + +T+ L
Sbjct: 113 PVTEKHVGDGMTVAELCAAALQYSDNTAANLLIALLGGPQAVTAYARSIGDTTFRLDRRE 172
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T A + T A A L + D Q+ + A
Sbjct: 173 TELNTAIPGDERDTTTPAAMAASLRRLLVGDALGAAQRAQLDTWMLGNTTGAARIRAGVP 232
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI----LGALDRNTRNK 254
KTG N + A +++ I ++ + + RN
Sbjct: 233 ADWRVADKTGTGDYGTGNDIGVAYPPNRAPIVIVIYTTMRDKNAQARND 281
>gi|115031|sp|P00809|BLAC_BACCE RecName: Full=Beta-lactamase 1; AltName: Full=Beta-lactamase I;
AltName: Full=Penicillinase; Flags: Precursor
gi|39434|emb|CAA25753.1| type 1 penicillinase [Bacillus cereus]
Length = 306
Score = 41.9 bits (96), Expect = 0.15, Method: Composition-based stats.
Identities = 35/220 (15%), Positives = 59/220 (26%), Gaps = 5/220 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I P+ + AS K + A V+ L IT +K
Sbjct: 71 IDTGTNQTI-SYRPNERFAFASTYKALAAGVLLQQNSID--SLNEVITYTKEDLVDYSPV 127
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N + K +K ++HM + T
Sbjct: 128 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFNKIGGPKGYEKALRHMGDRITMSNRFETE 187
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 188 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGIPTD 247
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
G K+G N +A + + I V++ + D
Sbjct: 248 WVVGDKSGAGSYGTRNDIAVVWPPNSAPIIVLISSKDEKE 287
>gi|108757859|ref|YP_631333.1| putative D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Myxococcus xanthus DK 1622]
gi|108461739|gb|ABF86924.1| putative D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Myxococcus xanthus DK 1622]
Length = 494
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 21/86 (24%)
Query: 1 MRQFLVIIAMAMLSNIFP----------------FLSIAETNKLP----YYTLLDTNTGH 40
MR+ L + + + ++ ET + ++D TG
Sbjct: 1 MRRILSASLLLVAPLVLSGCFRETRPEGDTLPSLARALFETLEAEGALASAYVVDAQTGE 60
Query: 41 VIAENYPDHPWNPASLTKLM-TAYVV 65
+ + PAS K++ TA V+
Sbjct: 61 PLFTHREHVRLLPASTLKVVSTASVL 86
>gi|325292312|ref|YP_004278176.1| Beta-lactamase class D [Agrobacterium sp. H13-3]
gi|325060165|gb|ADY63856.1| Beta-lactamase class D [Agrobacterium sp. H13-3]
Length = 273
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 6/103 (5%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKL-PYYTLLDTNTGHVIAENYP-DHPWNPASLTKLMTAY 63
++++ L I P + A+ ++ + TG VI + D PAS K+ A
Sbjct: 8 IVLSCIALQGILPLSASAQQSQAFECTLVTSIETGAVINQQGACDQRVAPASTFKVPLAL 67
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ + +L K +
Sbjct: 68 IGYDAG----ILLDDKTPAWDWKPGTEARAQDRKTVDPTIWEQ 106
>gi|107123342|gb|ABF83599.1| extended-spectrum beta-lactamase PER-1 [Acinetobacter baumannii]
Length = 269
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 21/229 (9%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L + +++ K
Sbjct: 39 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 98
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ L+ S + + L + +++ +++G+ T +
Sbjct: 99 VPVQQLLQYSVSHSDNVACDLLFELV-GGPAALHDYIQSMGIKETAVVANEAQ--MHADD 155
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------------- 211
+ S + + + + +
Sbjct: 156 QVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 215
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G G+K G T A+ ++ + + L+ + +R +
Sbjct: 216 KTGTSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 263
>gi|319783888|ref|YP_004143364.1| beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317169776|gb|ADV13314.1| Beta-lactamase [Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 275
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 1 MRQF--LVIIAMAMLSNIFPFLSIAETNKLPYY--------TLLDTNTGHVIAENYP-DH 49
MR F L I +L + L + + D +G + ++ D
Sbjct: 1 MRNFDRLPFIFAGILFLLAWLLGFP--LRAQSAPLGDLQCTVIADAASGKTLYQDGVCDQ 58
Query: 50 PWNPASLTKLMTAYVVFS 67
++PAS K+ + + +
Sbjct: 59 RFSPASTFKVPLSLIGYD 76
>gi|297251583|gb|ADI25068.1| oxacillinase OXA-114d [Achromobacter xylosoxidans]
Length = 275
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 21/243 (8%), Positives = 54/243 (22%), Gaps = 11/243 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD----HPWNPASLT 57
R+ + A+ + + + D G ++ + + P S
Sbjct: 4 RRLSCALGAALSLSALGGGPVQAAVLCT--VVADAADGRILFQQGTQQACAERYTPGSTF 61
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
KL A + + + + + + + +
Sbjct: 62 KLAIALMGADAGILQGPHEPVWNYQPAYPDWGGDAWRQPTDPARWIKYSVVWYSQLTAKA 121
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRI 177
K+ G +++ + R + +
Sbjct: 122 LGQDRFQRYTSAFGYGNADVSGEPGKHNGTDGAWIISSLRISPLEQLAFLRKLVNRQLPV 181
Query: 178 KTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
K + G + Y G++G+ T V A + +
Sbjct: 182 KAAAYELAENLFEAGQADGWRLYG---KTGTGSPGSNGVYTAANAYGW--FVGWARKDGR 236
Query: 238 SLI 240
L+
Sbjct: 237 QLV 239
>gi|168705626|ref|ZP_02737903.1| beta-lactamase [Gemmata obscuriglobus UQM 2246]
Length = 296
Score = 41.9 bits (96), Expect = 0.16, Method: Composition-based stats.
Identities = 47/300 (15%), Positives = 84/300 (28%), Gaps = 42/300 (14%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP------------YYTLLDTNTGHVIAENYPDHP 50
++L ++ + +L P + A + + TG D P
Sbjct: 8 RYLALVCLGLL----PPHASAADLESRITPLVKEHKGKVAVAVKHLKTGEEFY-LNADEP 62
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITI--SKNASEYPPSNSTFKKGSTMTLDNAL 108
ASL KL + KE K P+T+ F +G+ L +A+
Sbjct: 63 MPTASLIKLPIMVEAYWQAKEDKIKFDKPVTLAKGDKVPGSGILTPHFSEGAAFPLKDAI 122
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH----- 163
+L+IV S N + + + LGL T +
Sbjct: 123 RLMIVYSDNTATNMVIDQIGLP------ATGERMAQLGLKNTKVNAKVFKPETRLSQEFG 176
Query: 164 ------YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
TTA++ L I + +K K
Sbjct: 177 KKYGLGSTTAKEAVRLLELIDAGKVVSPEACKEMLGHLKACDDKEKLVRFLPAGTVVAHK 236
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA------SLLSMGFYNKTDRK 271
+G AS + +G + V+ A + +A + F + ++K
Sbjct: 237 SGSVDASKTDAGIIYTKGGPIAVCVLTDANEDKRWAADNAGQVLIGKVAKEVFDHFAEKK 296
>gi|269929220|ref|YP_003321541.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
gi|269788577|gb|ACZ40719.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
Length = 434
Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 1/118 (0%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ ++ G + E PD + ASL KL ++ + I
Sbjct: 101 PLVAEVPAEIGIVVALPDGTRLYEYQPDRLFEAASLYKLGIMVELYRQREAGWISFDETI 160
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
T+ E P F+ T + L ++ +++++A + A + M
Sbjct: 161 TLLPGYYEEGPDVYGFEAIGTAVPIDDLLWAMIAASSNVA-SHALLDRIGNEAVNATM 217
>gi|284030979|ref|YP_003380910.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Kribbella flavida DSM 17836]
gi|283810272|gb|ADB32111.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Kribbella flavida DSM 17836]
Length = 528
Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D TG + + PAS TKL ++
Sbjct: 66 LVRDATTGETLYDRNGGTRLLPASNTKLFSSAAAME 101
>gi|146276537|ref|YP_001166696.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacter sphaeroides ATCC 17025]
gi|145554778|gb|ABP69391.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacter sphaeroides ATCC 17025]
Length = 485
Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
TG ++ PAS K +TA
Sbjct: 65 TGELLEARNAALRLPPASTAKAITALYALE 94
>gi|186475929|ref|YP_001857399.1| beta-lactamase [Burkholderia phymatum STM815]
gi|184192388|gb|ACC70353.1| Beta-lactamase [Burkholderia phymatum STM815]
Length = 300
Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 72/233 (30%), Gaps = 8/233 (3%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
L DT G + + S K + A V + K L I +K+A
Sbjct: 59 AIL-DTANGQ-LQGWRARERFPMCSTFKFLLASAVLMRKDQGKEQLGRRIVYAKDAVVAN 116
Query: 91 PSNSTFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGL 147
S + G MT+ + + +S N A + ES+ F + + + L
Sbjct: 117 SPVSGPRAGGDGMTVSELCEAALTRSDNTAANLLLESIGGPPALTVFARGIGDGVTRLDR 176
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+ A T A +A + + + + + K A
Sbjct: 177 NEPTLNEAIEGDPRDTTTPAAMIADMRAMLLGEHLSAASRQHLTVWLVANKTGDTRLRAG 236
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQS--LIAVIL-GALDRNTRNKVSA 257
G KTG N +A + L+AV L GA + + +A
Sbjct: 237 LPPDWRVGDKTGTGERGTSNDIAIVWPAGRPPVLVAVYLTGATQTSAAQRDAA 289
>gi|15077505|gb|AAK83220.1|AF338038_3 class A beta-lactamase [Rahnella aquatilis]
gi|308390287|gb|ADO32587.1| class A beta-lactamase RAHN-1 [Rahnella sp. 9-Pear]
Length = 295
Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 12/245 (4%)
Query: 30 YYTLLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L+D + + D + S +K M A + + KK +LT + + ++
Sbjct: 53 GVMLIDTADNSQI--AYRADERFAMCSTSKFMAASAILKESEVKKNLLTQHVALKQSDLV 110
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLG 146
+ MT+ + S N + E L K + + + + + L
Sbjct: 111 NYNPITEKHLNDGMTIGELAAAALQYSDNAAMNKLIEHLGGPHKVTDYARTLGDKTFRLD 170
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+ A + L Q+ + A
Sbjct: 171 RTEPTLNTAIPGDDRDTTSPRAMALSLQHATLGSALAEPQRAQLVEWMKGNTTGAMSIRA 230
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASL 259
G KTG N +A ++ L+ V A R +A +
Sbjct: 231 GLPATWVVGDKTGSGDYGTTNDIAVIWPENKAPLVLVTYFTQPEKDAKSRRDVLASAAKI 290
Query: 260 LSMGF 264
++ G+
Sbjct: 291 VTQGY 295
>gi|330469075|ref|YP_004406818.1| beta-lactamase [Verrucosispora maris AB-18-032]
gi|328812046|gb|AEB46218.1| beta-lactamase [Verrucosispora maris AB-18-032]
Length = 439
Score = 41.5 bits (95), Expect = 0.16, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + S+TK MTA ++ + L P
Sbjct: 50 DADLQFRIGSITKTMTAVLIMQERDAGRLALDDP 83
>gi|317157030|ref|XP_001826179.2| esterase [Aspergillus oryzae RIB40]
Length = 417
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 17/146 (11%)
Query: 32 TLLDTNTGHVIAEN----------YP-----DHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+D ++G +I D + AS+TKL+TA V ++ L
Sbjct: 25 IAID-SSGKIIYHRAAGKASLDDENAPALQTDSLYWIASMTKLVTAIAVMQLVERGIVSL 83
Query: 77 T-TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFV 135
TI + + + N L L V+ + + +
Sbjct: 84 DEDVRTIVPELRDIQILEDIRNDKDSSSESNQLHLKPVQGKITLRNLMCHTAGFVYDSSS 143
Query: 136 QHMNNTSKNLGLSATHFMNAHGVVQH 161
+ SK+ G +A F + H
Sbjct: 144 PLLQKWSKSHGRTAYTFCGSMAGYHH 169
>gi|315221834|ref|ZP_07863746.1| conserved domain protein [Streptococcus anginosus F0211]
gi|315189067|gb|EFU22770.1| conserved domain protein [Streptococcus anginosus F0211]
Length = 337
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 25/179 (13%), Positives = 53/179 (29%), Gaps = 12/179 (6%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D +G + P S KL +V +++ +T I+ EY ++
Sbjct: 105 DLTSGQI-YAMNETQPMTAGSTYKLPLNMLVVDEVEKGNLSMTERFDITHTRYEYIGEHN 163
Query: 95 TFKKGST--MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ M++ + ++ S N A A+AE L +K + +
Sbjct: 164 NYVAAFNGTMSIPEMQEYSLLYSENTPAYALAERLGGLDKAYT---------MYQHYGKG 214
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ + TT + + +Y G + Y + +
Sbjct: 215 KGDVETINQQNQTTTDYYIQVLDYLWKHQEKYKDLLYYIGESFPNEYYKRYVRDIPIYQ 273
>gi|303232588|ref|ZP_07319274.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
PB189-T1-4]
gi|302481375|gb|EFL44449.1| serine-type D-Ala-D-Ala carboxypeptidase [Atopobium vaginae
PB189-T1-4]
Length = 276
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 39/255 (15%), Positives = 75/255 (29%), Gaps = 26/255 (10%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
+++ D + + ASL+KL + L ++
Sbjct: 22 DALAFSVYDMDANSYVYYEGAGQLPTVASLSKLFAIDYAL-----SRVKLDDVFEANEET 76
Query: 87 SE--YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ S+ T T ++ ++V S ND A +A ++ K + +
Sbjct: 77 LKLVPAGSSLANLTRGTYTAKQIMQAMLVPSGNDAAYVMAYNIGKMDLGAGHSAKEYINH 136
Query: 145 L-----------GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
G S T + G + + DF + +
Sbjct: 137 FVKSLSTYLAREGYSKTDLFDPSGFSTQASTNLDDTNRVTLKLLDYDFVKECMGESSFTI 196
Query: 194 EIKGKKYPNTN------WAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGA 246
K + N + G G+KTG T AS +NI+A + + L A
Sbjct: 197 TTKQGNFTWKNTSEFLDKESLFYNGHIKGVKTG-TMASSYNIIALYENDGRRYLITCLAA 255
Query: 247 LDRNTRNKVSASLLS 261
R + + ++
Sbjct: 256 HSNKDRYQAVQAAIN 270
>gi|13399766|pdb|1G6A|A Chain A, Pse-4 Carbenicillinase, R234k Mutant
Length = 271
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 33/212 (15%), Positives = 66/212 (31%), Gaps = 3/212 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+LDT G + + + S K + + ++ K + + I K
Sbjct: 27 VLDTQNGE-YWDYNGNQRFPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSP 85
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSAT 150
+ G +TLD+A + S N A I ++ K F++ + + L
Sbjct: 86 VIEKQVGQAITLDDACFATMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEP 145
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T + L+ + M+ +++ + + N +V
Sbjct: 146 DLNEGKLGDLRDTTTPKAIASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPA 205
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
K+G +I A Q+ I V
Sbjct: 206 GWNIADKSGAGGFGARSITAVVWSEHQAPIIV 237
>gi|291163433|gb|ADD80743.1| extended-spectrum beta-lactamase PER-6 [Aeromonas
allosaccharophila]
gi|301030423|gb|ADK47973.1| extended-spectrum beta-lactamase PER-6 [Aeromonas media]
gi|316994934|gb|ADU79018.1| extended-spectrum beta-lactamase PER-6 [Aeromonas veronii]
gi|316994937|gb|ADU79020.1| extended-spectrum beta-lactamase PER-6 [Aeromonas
allosaccharophila]
Length = 308
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 28/225 (12%), Positives = 70/225 (31%), Gaps = 17/225 (7%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ K+ A +V + + K L + +++ A + K
Sbjct: 62 NPFEKFPMQSVFKMHLAMLVLHQVDQGKLDLNKTVAVNRAAVLQNTWSPMMKDHQGDEFT 121
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ----- 160
++ L+ S + + L + ++ ++LG+ T + +
Sbjct: 122 VTVQQLLQYSVSHSDNVACDLLFELV-GGPAALHAYIQSLGIKETEVVANEAQMHADDQV 180
Query: 161 -HGHYTTARDMAILSWRIKTDFP--------QYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ ++T+ + A L + + + + + K V
Sbjct: 181 QYKNWTSMKAAAQLLRKFEQKKQLSETSQALLWKWMVETTTGPQRLKGLLPAGTVVAHKT 240
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKV 255
G G++ G T A+ +I + + L+ + R
Sbjct: 241 GTSGVRAGKTAATN-DIGVIMLPDGRPLLVAVFVKDSAESARTNE 284
>gi|118587704|ref|ZP_01545114.1| Beta-lactamase class A [Stappia aggregata IAM 12614]
gi|118439326|gb|EAV45957.1| Beta-lactamase class A [Stappia aggregata IAM 12614]
Length = 298
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 38/276 (13%), Positives = 77/276 (27%), Gaps = 23/276 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETN------------KLPY-------YTLLDTNTGHVI 42
R+ + +++A+ + + A +LD+ TG
Sbjct: 6 RRNALTLSLALFATVPSISGSALAAGFDPAPLEKTVQDAESRLSARIGVAVLDSETGKT- 64
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS-T 101
+ D + S K + ++ + + I K + K GS
Sbjct: 65 FTHRADERFPLNSTFKAFLCAALLEKGEQGEVQPDRRVKIRKEDLVSYSPVTEKKVGSGG 124
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVV 159
MT I S N A + E++ + +++ + +T L +
Sbjct: 125 MTYLELCDAAITISDNAAANLVLEAVGGPQGLTDYLRGIGDTITRLDRTEPALNEGQAGD 184
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
T A +A L + D Q+ G + + T A KTG
Sbjct: 185 SRDTTTPAAAVATLQKLVLGDALSPSARDQLTGWLLDNQVGKATLRAGLPEEWPVADKTG 244
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
N + D+ + + + +
Sbjct: 245 AGGNGSRNNIGVIWPDDRQPVVIAVYITQTDASFDD 280
>gi|149913664|ref|ZP_01902197.1| penicillin-binding protein 2 [Roseobacter sp. AzwK-3b]
gi|149812784|gb|EDM72613.1| penicillin-binding protein 2 [Roseobacter sp. AzwK-3b]
Length = 647
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 16/146 (10%), Positives = 32/146 (21%), Gaps = 37/146 (25%)
Query: 27 KLPYYTLLDTNTGHVIAE------------------------NYPDHPW---------NP 53
+ ++D TG V+A + P P
Sbjct: 266 ESAAAVVMDCETGDVLASASAPSFDPNLFVRGISVADYQALLDNKYRPLPNKAVQGMYPP 325
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
S K++TA + + L + E K S + L+
Sbjct: 326 GSTFKMVTALAALE---DGQVDLNETVYC-PGHLEVSGRRFHCWKRSGHGNMDMHGSLVE 381
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMN 139
+ + + +
Sbjct: 382 SCDVYYYDVALRTGIEKISAMARRLG 407
>gi|116871557|ref|YP_848338.1| beta-lactamase,putative [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116740435|emb|CAK19555.1| beta-lactamase,putative [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 262
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 33/227 (14%), Positives = 70/227 (30%), Gaps = 16/227 (7%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-S 83
T + D N V+ + + AS+ KL F + + + L T + I +
Sbjct: 15 TIDTKALYITDEN--KVLFAENENQLFTAASVIKLPIYLYFFEKIAKNELDLQTKMQIPT 72
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
+ + ST TL+ L L+I S N + E +Q + +
Sbjct: 73 EKIVAGAGIIKILPQKSTWTLEELLHLMIAISDNTATNQLI------ELATMQKLQSWIS 126
Query: 144 NLGLSATHFMNAHGVV---QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+ + + + +A+ + +I Y + + +++
Sbjct: 127 ENHWNDGIQLERKMMDFTTTKQNKISAKAAVNILRKIIELGELYPDLKETIRRPLYNQQF 186
Query: 201 PNTNWAVGTFLGADG----MKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ G G KTG ++ +G+ A +
Sbjct: 187 RSNIAGTLEEAGIPGLQMLNKTGELKDIQHDVAFFEYKGNTRFAATL 233
>gi|255657148|ref|ZP_05402557.1| putative penicillin-binding protein [Clostridium difficile
QCD-23m63]
gi|296452014|ref|ZP_06893729.1| beta-lactamase [Clostridium difficile NAP08]
gi|296879591|ref|ZP_06903570.1| beta-lactamase [Clostridium difficile NAP07]
gi|296259205|gb|EFH06085.1| beta-lactamase [Clostridium difficile NAP08]
gi|296429394|gb|EFH15262.1| beta-lactamase [Clostridium difficile NAP07]
Length = 340
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 22/219 (10%), Positives = 55/219 (25%), Gaps = 14/219 (6%)
Query: 36 TNTGHVIAEN-----YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
G V+ E D ++ AS+TK + + ++ + + +
Sbjct: 46 ARKGKVVFEKYYNGYNADDTFHVASVTKSIISALIGIAIDKGYIKDVDQKVVDFFPEYTC 105
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ KK T+ + ++ K + + + +G
Sbjct: 106 SPSEICKKAVTIRHLLTMTAPYPFKNMTESLERLCKQKDWIKYTLNQLGQKGE-IGTFKY 164
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
H + TT + + + + + N
Sbjct: 165 SSAGTHLLSAIITKTTGKSAREFANEYLFKPIGMKIIPDYDMKDFGFEDFFGKNLKGWAK 224
Query: 211 L--GADGMKTGFTCASGFNIVASA------IQGDQSLIA 241
G G T ++ + I ++ +I+
Sbjct: 225 DRQGYSTGGWGLTLSARDMLRFGFLYLNDGIWNNKRIIS 263
>gi|302510158|ref|XP_003017039.1| hypothetical protein ARB_05333 [Arthroderma benhamiae CBS 112371]
gi|291180609|gb|EFE36394.1| hypothetical protein ARB_05333 [Arthroderma benhamiae CBS 112371]
Length = 2838
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 16/82 (19%)
Query: 12 MLSNIFPFLSIAETNKLPYYT--LLDTNTGHVIAENYP-------------DHPWNPASL 56
M S Y +++ + G + + D + AS+
Sbjct: 2602 MFSTYLKQAVSGPKPVAHSYVCSVINKD-GDQLYSHAEGSISQHSSERAGFDSVYWMASM 2660
Query: 57 TKLMTAYVVFSFLKEKKAMLTT 78
TKLMTA V ++ + L
Sbjct: 2661 TKLMTAIAVMLCVERGQISLDE 2682
>gi|157375428|ref|YP_001474028.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sediminis
HAW-EB3]
gi|157317802|gb|ABV36900.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella sediminis
HAW-EB3]
Length = 485
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 9/67 (13%)
Query: 1 MRQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ + + LS I + D VI E D
Sbjct: 1 MKKLTSALLLYWLSTSTACADEYFSNILSLIKPPHSHTSVIATDLVNDSVIYEENADILL 60
Query: 52 NPASLTK 58
PAS K
Sbjct: 61 LPASTQK 67
>gi|305680597|ref|ZP_07403405.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Corynebacterium matruchotii ATCC 14266]
gi|305660128|gb|EFM49627.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Corynebacterium matruchotii ATCC 14266]
Length = 420
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
D TG+V+ P P PAS TK++T
Sbjct: 81 DVTTGNVVLAKNPQLPLLPASSTKVLTVSAAL 112
>gi|225022108|ref|ZP_03711300.1| hypothetical protein CORMATOL_02141 [Corynebacterium matruchotii
ATCC 33806]
gi|224945041|gb|EEG26250.1| hypothetical protein CORMATOL_02141 [Corynebacterium matruchotii
ATCC 33806]
Length = 420
Score = 41.5 bits (95), Expect = 0.17, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
D TG+V+ P P PAS TK++T
Sbjct: 81 DVTTGNVVLAKNPQLPLLPASSTKVLTVSAAL 112
>gi|315022278|gb|EFT35306.1| D-alanyl-D-alanine carboxypeptidase [Riemerella anatipestifer
RA-YM]
Length = 473
Score = 41.5 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ D + +I+ P PAS TKL+T
Sbjct: 67 VVYDPKSKQIISSYNEATPLVPASTTKLLT 96
>gi|307153887|ref|YP_003889271.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cyanothece sp. PCC
7822]
gi|306984115|gb|ADN15996.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cyanothece sp. PCC
7822]
Length = 305
Score = 41.5 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
G V+ + D + PAS TK+ T+
Sbjct: 99 LTDGTVLYSHNADKFFIPASNTKIFTSAAALQ 130
>gi|188990552|ref|YP_001902562.1| Beta-lactamase [Xanthomonas campestris pv. campestris str. B100]
gi|167732312|emb|CAP50504.1| Beta-lactamase [Xanthomonas campestris pv. campestris]
Length = 296
Score = 41.5 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 8/231 (3%)
Query: 33 LLDTNTG-HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
LLD+ +G + + + S K + A V + + + LT I I +
Sbjct: 55 LLDSGSGWRI--GQRENERFPMCSTFKFVLAAAVLQRVDKGELRLTQQIKIRASDMLEHA 112
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSA 149
+ G ++++ + ++ S N A + +F++ + +T
Sbjct: 113 PVTERHVGGSLSVAELCQATMIHSDNPAANLLFPLIGNPPGLTRFLRGIGDTKTRSDRLE 172
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T A A L + D Q Q+ I + + A
Sbjct: 173 PEMNGFAPGEPCDTTTPAAMAATLRTLLLGDALQPASRKQLTAWMIDNRTGDDCLRAGLP 232
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQS---LIAVILGALDRNTRNKVSA 257
G KTG N +A ++ L+ L + + +A
Sbjct: 233 RDWKIGDKTGSNGTDTRNDIAIIWPPGRTAPLLLTAYLNGATVDAAGRDAA 283
>gi|322506442|gb|ADX01896.1| Extended-spectrum beta-lactamase PER-1 precursor [Acinetobacter
baumannii 1656-2]
Length = 293
Score = 41.5 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 21/229 (9%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L + +++ K
Sbjct: 47 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 106
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ L+ S + + L + +++ +++G+ T +
Sbjct: 107 VPVQQLLQYSVSHSDNVACDLLFELV-GGPAALHDYIQSMGIKETAVVANEAQ--MHADD 163
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------------- 211
+ S + + + + +
Sbjct: 164 QVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 223
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G G+K G T A+ ++ + + L+ + +R +
Sbjct: 224 KTGTSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 271
>gi|24373941|ref|NP_717984.1| penicillin-binding protein 4 [Shewanella oneidensis MR-1]
gi|24348376|gb|AAN55428.1|AE015680_3 penicillin-binding protein 4 [Shewanella oneidensis MR-1]
Length = 507
Score = 41.5 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNK-----------LPY----YTLL-DTNTGHVIAENYPD 48
L++ +A + A K P L D + + D
Sbjct: 16 LLLTVVATALFPSNVWAAAADIKHTTLDQQMSDIAPSHSQIALLAHDMSNDKQLYSQQAD 75
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ PAS K++TA + L + + +T
Sbjct: 76 TLFIPASTQKVLTAVTALAALGPEFSYVTDLW 107
>gi|325336594|gb|ADZ12868.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Riemerella
anatipestifer RA-GD]
Length = 484
Score = 41.5 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ D + +I+ P PAS TKL+T
Sbjct: 78 VVYDPKSKQIISSYNEATPLVPASTTKLLT 107
>gi|107123318|gb|ABF83598.1| extended-spectrum beta-lactamase PER-1 [Acinetobacter baumannii]
Length = 266
Score = 41.5 bits (95), Expect = 0.18, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 21/229 (9%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L + +++ K
Sbjct: 39 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 98
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ L+ S + + L + +++ +++G+ T +
Sbjct: 99 VPVQQLLQYSVSHSDNVACDLLFELV-GGPAALHDYIQSMGIKETAVVANEAQ--MHADD 155
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------------- 211
+ S + + + + +
Sbjct: 156 QVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 215
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G G+K G T A+ ++ + + L+ + +R +
Sbjct: 216 KTGTSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 263
>gi|288927385|ref|ZP_06421232.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella sp. oral taxon 317 str. F0108]
gi|288330219|gb|EFC68803.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella sp. oral taxon 317 str. F0108]
Length = 427
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 25/278 (8%), Positives = 59/278 (21%), Gaps = 22/278 (7%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYP 90
+ D + I PAS K++TA L T +
Sbjct: 86 MVYDLDADSAIYCFNERQTMRPASTMKVITAITALDKLGGSHQFKTELCYTGTIENRTLT 145
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ + + + I +L + +
Sbjct: 146 GNVYCVGGMDPRFNTDDMHAFVESLQKMGVDTIRGTLYADKSMKTTDLLGKGWCWDDDNP 205
Query: 151 ------HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
+ + + + + ++ PQ + +
Sbjct: 206 VLSALVYARKDVFMDRFMQELRKAGIVLDAFTATGQRPQDATCICTRFHTMDQVLMRMMK 265
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA------- 257
+ + A + + +A Q + LIA LG + +
Sbjct: 266 ESDNLYAEAMFYQIAAATGNKPATAKNAAQVVKRLIA-KLGLNAAAYKVADGSGLSLYNY 324
Query: 258 -------SLLSMGFYNKTDRKKINYIIKDFYQQNLSNE 288
++L F N ++ +
Sbjct: 325 VSAELEVAMLRYAFRNANIYLHLSPSLPIAGIDGTLKS 362
>gi|167578082|ref|ZP_02370956.1| class A beta-lactamase precursor [Burkholderia thailandensis TXDOH]
Length = 289
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 46/276 (16%), Positives = 83/276 (30%), Gaps = 22/276 (7%)
Query: 1 MRQFLVIIAMA--MLSNIFPFLSIAETNKLP--------------YYTLLDTNTGHVIAE 44
MR+ L+I A++ ++ P + + LDT TG I
Sbjct: 1 MRRSLLIAAVSAPLVGACAPLRDNSRNVAAEQQLRELESTFDGRLGFVALDTATGARI-A 59
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
+ D + S K M + V + A+L I +K + G+ MT+
Sbjct: 60 HRADERFPFCSTFKTMLSAAVLARSAGDAALLQRRIPYAKRDLVRYSPITEKHVGAGMTV 119
Query: 105 DNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ S N A + + + + + + + L T A +
Sbjct: 120 AELCAATLQYSDNTAANLLIALLGGPQAVTAYARSIGDATFRLDRRETELNTAIPGDERD 179
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
T A A + + D Q+ + K A KTG
Sbjct: 180 TTTPAAMAASVRRLLVGDALDTAQRAQLNAWMLGNKTGDARIRAGVPAGWRVADKTGTGD 239
Query: 223 ASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSA 257
N + A D+ ++ V+ +RN +
Sbjct: 240 YGTGNDIGVAYPPDRAPIVFVV--YTTMRSRNAQAR 273
>gi|126650730|ref|ZP_01722946.1| Beta-lactamase [Bacillus sp. B14905]
gi|126592395|gb|EAZ86413.1| Beta-lactamase [Bacillus sp. B14905]
Length = 261
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 26/196 (13%), Positives = 60/196 (30%), Gaps = 2/196 (1%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ D T + + + ++ AS+ K+ V ++ + L + +TI+
Sbjct: 19 FVKDPKTDQFLFSHQLEESFSSASIIKVPILLAVLAYTGKHNISLHSALTITPTDWVDFS 78
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S + + + + ++I V I + + + +L
Sbjct: 79 VISEQRLTQSTVYELLVWMIITSDNTATNVLIDVVGMGFLNDYFRQIGLQETSLQRKMMD 138
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
++T+A+DMA L RI Y ++ + ++
Sbjct: 139 VERLAM--GIDNFTSAQDMAHLFTRIYQKDLLASPYNELVIDILSRQRVYEGLKRYLVDD 196
Query: 212 GADGMKTGFTCASGFN 227
KTG +
Sbjct: 197 VKLAHKTGGFDTVDHD 212
>gi|239630640|ref|ZP_04673671.1| beta-lactamase class A [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|239526923|gb|EEQ65924.1| beta-lactamase class A [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 255
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 63/216 (29%), Gaps = 7/216 (3%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ L+ +T HV+ D P+ ASL KL A V + + L ++ S
Sbjct: 14 KHALLV-ADTRHVLFGAQVDQPFPAASLIKLGIAAFVKEKAADDPSQL--ERQVTLPESV 70
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
F + + L L++ S N A+ + + + L
Sbjct: 71 GGAGILRFMSPQAWRVRDLLTLMLTVSDNLATNALLTTYGL--PTIAAWLTRHYPGVQLR 128
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+ + A + + P Q + K +
Sbjct: 129 RPLMQSTFDGDNMITASAAWQLLRALLMSDGNEPAADICAQALRHQQNRTKLL-LAPTME 187
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F+G KTG + A + L AV+L
Sbjct: 188 NFIGWLAGKTGELPHCEHDAACFAA-EGERLYAVVL 222
>gi|301067794|ref|YP_003789817.1| beta-lactamase class A [Lactobacillus casei str. Zhang]
gi|300440201|gb|ADK19967.1| Beta-lactamase class A [Lactobacillus casei str. Zhang]
Length = 261
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 63/216 (29%), Gaps = 7/216 (3%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ L+ +T HV+ D P+ ASL KL A V + + L ++ S
Sbjct: 20 KHALLV-ADTRHVLFGAQVDQPFPAASLIKLGIAAFVKEKAADDPSQL--ERQVTLPESV 76
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
F + + L L++ S N A+ + + + L
Sbjct: 77 GGAGILRFMSPQAWRVRDLLTLMLTVSDNLATNALLTTYGL--PTIAAWLTRHYPGVQLR 134
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+ + A + + P Q + K +
Sbjct: 135 RPLMQSTFDGDNMITASAAWQLLRALLMSDGNEPAADICAQALRHQQNRTKLL-LAPTME 193
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F+G KTG + A + L AV+L
Sbjct: 194 NFIGWLAGKTGELPHCEHDAACFAA-EGERLYAVVL 228
>gi|289581651|ref|YP_003480117.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Natrialba magadii ATCC 43099]
gi|289531204|gb|ADD05555.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Natrialba magadii ATCC 43099]
Length = 508
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
D TG VIA++ + P PAS KL+T F
Sbjct: 74 AAISVFARDIETGDVIADSGSERPVQPASTAKLLTTAAAFDE 115
>gi|62511921|gb|AAX54687.2| PER-1 beta-lactamase [Pseudomonas aeruginosa]
Length = 256
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 21/229 (9%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L + +++ K
Sbjct: 18 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 77
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ L+ S + + L + +++ +++G+ T +
Sbjct: 78 VPVQQLLQYSVSHSDNVACDLLFELV-GGPAALHDYIQSMGIKETAVVANEAQ--MHADD 134
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------------- 211
+ S + + + + +
Sbjct: 135 QVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 194
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G G+K G T A+ ++ + + L+ + +R +
Sbjct: 195 KTGTSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 242
>gi|297159325|gb|ADI09037.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces bingchenggensis BCW-1]
Length = 498
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
K +++D+ TG + D PAS+ KL T S
Sbjct: 111 KPRSVSVVDSATGRQLYGAQADTQAVPASIIKLATGIAALSA 152
>gi|254520163|ref|ZP_05132219.1| predicted protein [Clostridium sp. 7_2_43FAA]
gi|226913912|gb|EEH99113.1| predicted protein [Clostridium sp. 7_2_43FAA]
Length = 298
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 34/317 (10%), Positives = 85/317 (26%), Gaps = 53/317 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-----TNKLPYYTLLDTNTGHV---------IAEN- 45
M++ +++ + ++ + E + +++D + I
Sbjct: 1 MKKVYILLIVVLILSFQGCAQKEEVKEIEKSNAKTNSIIDKKVDEIAGDYKDNMSIYYKS 60
Query: 46 ---------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF 96
PD + AS TK+ ++ + E L I + +
Sbjct: 61 LNTDDEYILNPDKYYIAASTTKIPLCMMILDQVFEGAISLEDT--IYYEKLDSEGGSGVL 118
Query: 97 KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT--HFMN 154
+ + + + ++M + + L+
Sbjct: 119 YYLQEIPNITVEEAIYLSIVES-------------DNITKNMLHRISKISLTDYLRDITE 165
Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214
+ + +Y TAR + + R+ + + + K +E + +
Sbjct: 166 DDSIP-YENYITARQLYKVLERLYENPDN--NPYYEKLIEYMKETVFHDRLDKYLPYDIV 222
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVIL----GALDRNTR---NKVSASLLSMGFYNK 267
K G + + I V+L G L ++ LL G
Sbjct: 223 AHKIGDYYRYAHDCGIIYAKD--PYIIVVLTKDIGDLSDEPYENGSEDERYLLDWGNEAY 280
Query: 268 TDRKKINYIIKDFYQQN 284
I+ I +++
Sbjct: 281 EMIANISKEIYVMVEED 297
>gi|155674975|gb|ABU24823.1| beta-lactamase PER-1 [Acinetobacter baumannii]
Length = 307
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 21/229 (9%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L + +++ K
Sbjct: 61 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 120
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ L+ S + + L + +++ +++G+ T +
Sbjct: 121 VPVQQLLQYSVSHSDNVACDLLFELV-GGPAALHDYIQSMGIKETAVVANEAQ--MHADD 177
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------------- 211
+ S + + + + +
Sbjct: 178 QVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 237
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G G+K G T A+ ++ + + L+ + +R +
Sbjct: 238 KTGTSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 285
>gi|254881094|ref|ZP_05253804.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319640101|ref|ZP_07994828.1| exported D-alanyl-D-alanine carboxypeptidase penicillin-binding
protein [Bacteroides sp. 3_1_40A]
gi|254833887|gb|EET14196.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317388379|gb|EFV69231.1| exported D-alanyl-D-alanine carboxypeptidase penicillin-binding
protein [Bacteroides sp. 3_1_40A]
Length = 466
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL-----------PYYTLLDTNTGHVIAENYPDH 49
M++ L + + + +++ + D TG + +
Sbjct: 1 MKRVLFFFLLILSIHFINAQPLSQRLDALLHEEVLKTSEVGIAVFDLTTGKSVYRYQDEK 60
Query: 50 PWNPASLTKLMTAYVVF 66
+ PAS+ K++T+
Sbjct: 61 LYRPASVEKIITSVTAL 77
>gi|255102339|ref|ZP_05331316.1| putative penicillin-binding protein [Clostridium difficile
QCD-63q42]
Length = 340
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 21/219 (9%), Positives = 55/219 (25%), Gaps = 14/219 (6%)
Query: 36 TNTGHVIAEN-----YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
G ++ E D ++ AS+TK + + ++ + + +
Sbjct: 46 ARKGKIVFEKYYNGYNADDTFHVASVTKSIISALIGIAIDKGYIKDVDQKVVDFFPEYTC 105
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ KK T+ + ++ K + + + +G
Sbjct: 106 SPSEICKKAVTIRHLLTMTAPYPFKNMTESLERLCKQKDWIKYTLNQLGQKGE-IGTFKY 164
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
H + TT + + + + + N
Sbjct: 165 SSAGTHLLSAIITKTTGKSAREFANEYLFKPIGMKVIPDYDMKDFGFEDFFGKNLKGWAK 224
Query: 211 L--GADGMKTGFTCASGFNIVASA------IQGDQSLIA 241
G G T ++ + I ++ +I+
Sbjct: 225 DRQGYSIGGWGLTLSARDMLRFGFLYLNDGIWNNKRIIS 263
>gi|167576881|ref|ZP_02369755.1| beta-lactamase precursor [Burkholderia thailandensis TXDOH]
Length = 269
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 1 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLLQ-DGDCSRRASPASTFK 56
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ ++ + + + + +
Sbjct: 57 IAISLMGYDAGFLR--NEHDPVLPYRDTYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 114
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A + + KN GL +
Sbjct: 115 HLGAQRFARYAKAFDYGNADVSGDPGKNNGLDRSWI 150
>gi|254976789|ref|ZP_05273261.1| putative penicillin-binding protein [Clostridium difficile
QCD-66c26]
gi|255094175|ref|ZP_05323653.1| putative penicillin-binding protein [Clostridium difficile CIP
107932]
gi|255315927|ref|ZP_05357510.1| putative penicillin-binding protein [Clostridium difficile
QCD-76w55]
gi|255518586|ref|ZP_05386262.1| putative penicillin-binding protein [Clostridium difficile
QCD-97b34]
gi|255651706|ref|ZP_05398608.1| putative penicillin-binding protein [Clostridium difficile
QCD-37x79]
gi|260684739|ref|YP_003216024.1| putative penicillin-binding protein [Clostridium difficile CD196]
gi|260688397|ref|YP_003219531.1| putative penicillin-binding protein [Clostridium difficile R20291]
gi|306521505|ref|ZP_07407852.1| putative penicillin-binding protein [Clostridium difficile
QCD-32g58]
gi|260210902|emb|CBA66103.1| putative penicillin-binding protein [Clostridium difficile CD196]
gi|260214414|emb|CBE06838.1| putative penicillin-binding protein [Clostridium difficile R20291]
Length = 340
Score = 41.5 bits (95), Expect = 0.19, Method: Composition-based stats.
Identities = 22/219 (10%), Positives = 55/219 (25%), Gaps = 14/219 (6%)
Query: 36 TNTGHVIAEN-----YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
G V+ E D ++ AS+TK + + ++ + + +
Sbjct: 46 ARKGKVVFEKYYNGYNADDTFHVASVTKSIISALIGIAIDKGYIKDVDQKVVDFFPEYTC 105
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ KK T+ + ++ K + + + +G
Sbjct: 106 SPSEICKKAVTIRHLLTMTAPYPFKNMTESLERLCKQKDWIKYTLNQLGQKGE-IGTFKY 164
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
H + TT + + + + + N
Sbjct: 165 SSAGTHLLSAIITKTTGKSAREFANEYLFKPIGMKVIPDYDMKDFGFEDFFGKNLKGWAK 224
Query: 211 L--GADGMKTGFTCASGFNIVASA------IQGDQSLIA 241
G G T ++ + I ++ +I+
Sbjct: 225 DRQGYSIGGWGLTLSARDMLRFGFLYLNDGIWNNKRIIS 263
>gi|331699848|ref|YP_004336087.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Pseudonocardia dioxanivorans CB1190]
gi|326954537|gb|AEA28234.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Pseudonocardia dioxanivorans CB1190]
Length = 471
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 13 LSNIFPFLSIAETNKLPYYT------LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
L + + ++D +TG + + D P P S KL+T+
Sbjct: 72 LPTAAGLTAALQPVTGTSALGTFGGAVVDPSTGSQLWQRAVDQPLAPGSTAKLLTSAAAL 131
>gi|291005123|ref|ZP_06563096.1| lipoprotein [Saccharopolyspora erythraea NRRL 2338]
Length = 284
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 12 MLSNIFPFLSIAETNKLP---YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + A YT++D +G ++ + AS+ KL+ A
Sbjct: 2 IAATPALSAPQAPQVDPGITLGYTVVDARSGETTLQSNEHEQFRSASVVKLLIALDYLEG 61
Query: 69 LKEK 72
L+
Sbjct: 62 LEPG 65
>gi|220919035|ref|YP_002494339.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219956889|gb|ACL67273.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 743
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 15 NIFPFLSIAETNKLPYYTLLDT-NTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ + + L+ +TG V+ PD NPAS KL+T+
Sbjct: 52 ALTAIVDGSPLAGARVGILVSAIDTGEVVYARDPDVLLNPASNVKLVTSAAAL 104
>gi|150003677|ref|YP_001298421.1| putative exported D-alanyl-D-alanine carboxypeptidase
penicillin-binding protein [Bacteroides vulgatus ATCC
8482]
gi|149932101|gb|ABR38799.1| putative exported D-alanyl-D-alanine carboxypeptidase
penicillin-binding protein [Bacteroides vulgatus ATCC
8482]
Length = 466
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 10/77 (12%), Positives = 26/77 (33%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL-----------PYYTLLDTNTGHVIAENYPDH 49
M++ L + + + +++ + D TG + +
Sbjct: 1 MKRVLFFFLLILSIHFINAQPLSQRLDALLHEEVLKTSEVGIAVFDLTTGKSVYRYQDEK 60
Query: 50 PWNPASLTKLMTAYVVF 66
+ PAS+ K++T+
Sbjct: 61 LYRPASVEKIITSVTAL 77
>gi|46244168|gb|AAP93848.1| beta-lactamase [Klebsiella pneumoniae]
Length = 157
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 26/90 (28%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 38 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 97
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI 123
S MT+ I S N +
Sbjct: 98 SEKHLVDGMTIGELCAAAITLSDNSAGNLL 127
>gi|262274894|ref|ZP_06052705.1| D-alanyl-D-alanine carboxypeptidase [Grimontia hollisae CIP
101886]
gi|262221457|gb|EEY72771.1| D-alanyl-D-alanine carboxypeptidase [Grimontia hollisae CIP
101886]
Length = 471
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYT---LLDTNTGHVIAENYPDHPWNPASLTKL 59
F +++ ++ ++ P I + D + I D PAS K+
Sbjct: 6 IFFLLLPLSFATSAVPLNKIEAMLPAGSQLALSVYDASARAKIVSVDDDILLPPASTQKV 65
Query: 60 MTAYVV 65
+TA
Sbjct: 66 VTALAA 71
>gi|157692576|ref|YP_001487038.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
SAFR-032]
gi|157681334|gb|ABV62478.1| serine-type D-Ala-D-Ala carboxypeptidase [Bacillus pumilus
SAFR-032]
Length = 494
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 28/109 (25%)
Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAETNKLP----YYT--------------------- 32
M++F L + + PF + + +
Sbjct: 1 MKRFSQLLFLQICILSILFLPFSAKDDQLTARNGSLSWMTTLDEFIRKAPDLEGAISGIS 60
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ DT+ ++ E+ D PAS KL+T+ + L E T
Sbjct: 61 VRDTSDSSLLYEHQADIRLTPASNMKLLTSAIALDILGETHTFPTDIWM 109
>gi|168494147|ref|ZP_02718290.1| penicillin-binding protein 1B [Streptococcus pneumoniae CDC3059-06]
gi|38141957|dbj|BAD00781.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38141987|dbj|BAD00796.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|183575936|gb|EDT96464.1| penicillin-binding protein 1B [Streptococcus pneumoniae CDC3059-06]
Length = 821
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|89074262|ref|ZP_01160752.1| beta-lactamase [Photobacterium sp. SKA34]
gi|89049966|gb|EAR55500.1| beta-lactamase [Photobacterium sp. SKA34]
Length = 295
Score = 41.5 bits (95), Expect = 0.20, Method: Composition-based stats.
Identities = 41/278 (14%), Positives = 78/278 (28%), Gaps = 22/278 (7%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYT--------------LLDTNTGHVIAENYP 47
+ + + A L F +S+AE + +LD G + +
Sbjct: 10 KHIIGSVLTAFLLG-FSSVSLAENITVNSAIEHAEKQLGARIGVSVLDGK-GKQLYGYHS 67
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D + S K + + + M+ P I+ +A K G+ ++L A
Sbjct: 68 DQRFPLMSTFKTLACAKLLHDNQINNGMMDKPYQITADAILDYAPVFKDKVGTEVSLKEA 127
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTT 166
+ S N A + + +N+ L + TT
Sbjct: 128 CFATMTTSDNSAANLVLSHIGGPVGVTTFLINSGDSVTRLDRIEPLLNEATPGDKRDTTT 187
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD-GMKTGFTCASG 225
M + Q ++ K N G + ++G
Sbjct: 188 PYAMNKTITNLVLGNALNKSSKQQLKDWMEANKVSNGLLRSVLPKGWEIADRSGAGGHGS 247
Query: 226 FNIVASAIQGDQS--LIAVIL-GAL-DRNTRNKVSASL 259
I A + +I++ L G R+K A +
Sbjct: 248 RGITAVVWNEQKQPLVISIYLTGTKASIPERDKEIAQI 285
>gi|268317428|ref|YP_003291147.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Rhodothermus marinus DSM 4252]
gi|262334962|gb|ACY48759.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Rhodothermus marinus DSM 4252]
Length = 497
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 16/84 (19%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-TNKLP---------------YYTLLDTNTGHVIAE 44
MR + I + + + P + + T + +LD V+
Sbjct: 1 MRLRIWPILLLLWTVPAPVHAQSPRTLQATLDRVLDDPAYESAFWGALVLDLRDSTVLYA 60
Query: 45 NYPDHPWNPASLTKLMTAYVVFSF 68
+ + PAS+TKL
Sbjct: 61 RHARQNFTPASVTKLFITAAALEQ 84
>gi|322368704|ref|ZP_08043271.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Haladaptatus paucihalophilus DX253]
gi|320551435|gb|EFW93082.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Haladaptatus paucihalophilus DX253]
Length = 483
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
G V+A + D PAS TKL+T + F
Sbjct: 64 GDVLASHQADTVVKPASNTKLLTTALAFEH 93
>gi|254463746|ref|ZP_05077157.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacterales bacterium Y4I]
gi|206684654|gb|EDZ45136.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacterales bacterium Y4I]
Length = 494
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D TG ++ + PAS+ K +TA
Sbjct: 63 VADVKTGKLLEASGSGEALPPASVAKALTALYALD 97
>gi|52858439|gb|AAU89132.1| extended spectrum beta lactamase PER-3 [Aeromonas caviae]
Length = 308
Score = 41.5 bits (95), Expect = 0.21, Method: Composition-based stats.
Identities = 27/226 (11%), Positives = 70/226 (30%), Gaps = 15/226 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPPSNSTFKKGSTM 102
P + S+ KL A +V + + K L + +++ + + P ++
Sbjct: 62 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 121
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--Q 160
L V ++++A + L ++ + + H Q
Sbjct: 122 VPVQQLLQYSVSLSDNVACDLLFELVGGPAALHDYIQSMGIKETAVVANEAQMHADDQVQ 181
Query: 161 HGHYTTARDMAILSWRIKTDFP--------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ ++T+ + A + + + + + + K V G
Sbjct: 182 YQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAHKTG 241
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G+K G T A+ ++ + + L+ + +R +
Sbjct: 242 TSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 286
>gi|317505053|ref|ZP_07963000.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella salivae DSM 15606]
gi|315663831|gb|EFV03551.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella salivae DSM 15606]
Length = 420
Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 24/217 (11%), Positives = 52/217 (23%), Gaps = 9/217 (4%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ D + I PAS KL+TA L T K +
Sbjct: 78 MVYDLDADSTIFAYNERQLMRPASTMKLITAITAIDQLGGDYQFRTELCYTGKIENNKLI 137
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ G + V++ + V + ++ + +
Sbjct: 138 GDIYCVGGFDPRFNTDDLNAFVEAIRKMGVDTIQGH-LYADLSMKDTKQYGEGWCWDDKN 196
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI--------KGLEIKGKKYPNT 203
+ +V AR + L+ + + I
Sbjct: 197 PVLTPLLVGGKDIFMARFLDALTSHGVYVDATIDEKRKPIDAFCIVNRFHTIDQILMRML 256
Query: 204 NWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLI 240
+ + A + + + SA ++ L+
Sbjct: 257 KESNNLYAEAMYYQIAASTGNHPASAKSARNVERRLV 293
>gi|221229322|gb|ABO61014.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 301
Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 55/203 (27%), Gaps = 2/203 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K + V S + L T + I+
Sbjct: 59 VLNTGNGRRIGGHRQDERFPMCSTFKSLLVAHVLSLADAGRVSLDTRVPIAGKDLLSYAP 118
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 119 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSITRNDRNEP 178
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A L+ + Q Q I + A
Sbjct: 179 DVNLFVKGDPRDTTSPAAMATSLARFAVGNGLQPASRQQFADWLIDNQTGDACLRAGLGT 238
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 239 RWRVGDKTGSNGDDTRNDIAVLW 261
>gi|202071180|gb|ABO61015.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 301
Score = 41.1 bits (94), Expect = 0.21, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 55/203 (27%), Gaps = 2/203 (0%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+L+T G I + D + S K + V S + L T + I+
Sbjct: 59 VLNTGNGRRIGGHRQDERFPMCSTFKSLLVAHVLSLADAGRVSLDTRVPIAGKDLLSYAP 118
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G +T+ + + + S N A + F++ ++ +
Sbjct: 119 VARRHVGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSITRNDRNEP 178
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ A L+ + Q Q I + A
Sbjct: 179 DVNLFVKGDPRDTTSPAAMATSLARFAVGNGLQPASRQQFADWLIDNQTGDACLRAGLGT 238
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 239 RWRVGDKTGSNGDDTRNDIAVLW 261
>gi|148989917|ref|ZP_01821200.1| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Streptococcus
pneumoniae SP6-BS73]
gi|147924702|gb|EDK75787.1| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Streptococcus
pneumoniae SP6-BS73]
Length = 821
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|124244221|gb|ABM92282.1| beta-lactamase [Salmonella enterica subsp. enterica serovar
Typhimurium]
Length = 299
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 76/254 (29%), Gaps = 15/254 (5%)
Query: 3 QFLVIIAMAMLSNIFPFL-----------SIAETNKLPYYT-LLDTNTGHVIAENYPDHP 50
+FL + + S +F +I + + DT G + +
Sbjct: 13 KFLWAFSHLIPSVVFASSSKFQQVEQDVKAIEVSLSARIGVSVYDTQNGE-YWDYNGNQR 71
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + + ++ K + + I K + G +TLD+A
Sbjct: 72 FPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSPVIEKQVGQAITLDDACFA 131
Query: 111 LIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+ S N A I ++ K F++ + + L T
Sbjct: 132 TMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEPDLNEGKLGDLRDTTTPKA 191
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
+ L+ + M+ +++ + + N +V ++G +I
Sbjct: 192 IASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPAGWNIADRSGAGGFGARSI 251
Query: 229 VASAIQGDQSLIAV 242
A Q+ I V
Sbjct: 252 TAVVWSEHQAPIIV 265
>gi|23345326|gb|AAN28732.1| class A beta-lactamase [Klebsiella oxytoca]
Length = 288
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 39/242 (16%), Positives = 70/242 (28%), Gaps = 12/242 (4%)
Query: 33 LLDT-NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
L+DT + ++ D + S K+M A V + K ++ + I +
Sbjct: 49 LIDTTDNSQILY--RGDERFAMCSTGKVMAAAAVLKQSESNKDVVNKRLEIKASDLVVWS 106
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSA 149
+ S MTL + S N + L EK F + + + + L +
Sbjct: 107 PVTEKHLQSGMTLAELSAAALQYSDNTAMNKMIGYLGGPEKVTAFARSIGDVTFRLDRTE 166
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A + T L + Q+ + A
Sbjct: 167 PALNTAIPGDERDTTTPLAMAESLHKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLP 226
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAV------ILGALDRNTRNKVSASLLSM 262
G KTG N +A + L+ V + A R +A +++
Sbjct: 227 ASWVVGDKTGAGDYGTTNDIAVIWPENHAPLVLVTYFTQPLQDAKSRKDVLAAAAKIVTE 286
Query: 263 GF 264
G
Sbjct: 287 GL 288
>gi|87198305|ref|YP_495562.1| Beta-lactamase [Novosphingobium aromaticivorans DSM 12444]
gi|87133986|gb|ABD24728.1| Beta-lactamase [Novosphingobium aromaticivorans DSM 12444]
Length = 353
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 25/200 (12%), Positives = 61/200 (30%), Gaps = 33/200 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT---------------------------- 32
M+ I A++ ++ +
Sbjct: 33 MKFRTARIIAALMVAAPALVATVPAVQSRATVSLQDQRDQAIQQQVAAIAAEGRGRIGVA 92
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+D + G I D P+ AS K+ A +++ L + +E
Sbjct: 93 AMDLDGGGQIF-VNGDMPFPMASTAKVAVAATFLEQVEKGNFRLDQQFPMMVRVAETGRV 151
Query: 93 N--STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLS 148
+ + + G+ MT + ++L+I +S N+ + ++ + +++ T + L +
Sbjct: 152 SAEAPLRAGTVMTAQSLMELMITRSHNEATDGLIHAVGGYENVNRWLTRNGITGQRLDHT 211
Query: 149 ATHFMNAHGVVQHGHYTTAR 168
+ G + R
Sbjct: 212 MATLVRDDGRIDPAKVIDTR 231
>gi|15903950|ref|NP_359500.1| penicillin-binding protein 1B [Streptococcus pneumoniae R6]
gi|116516492|ref|YP_817313.1| penicillin-binding protein 1B [Streptococcus pneumoniae D39]
gi|307128358|ref|YP_003880389.1| penicillin-binding protein 1B [Streptococcus pneumoniae 670-6B]
gi|6165962|gb|AAF04736.1|AF101781_1 penicillin-binding protein 1b [Streptococcus pneumoniae]
gi|2982642|emb|CAA05302.1| penicillin-binding protein 1b [Streptococcus pneumoniae]
gi|15459604|gb|AAL00711.1| Penicillin-binding protein 1b [Streptococcus pneumoniae R6]
gi|38142005|dbj|BAD00805.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142009|dbj|BAD00807.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|116077068|gb|ABJ54788.1| penicillin-binding protein 1B [Streptococcus pneumoniae D39]
gi|306485420|gb|ADM92289.1| penicillin-binding protein 1B [Streptococcus pneumoniae 670-6B]
Length = 821
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|169833945|ref|YP_001695460.1| penicillin-binding protein 1B [Streptococcus pneumoniae
Hungary19A-6]
gi|168996447|gb|ACA37059.1| penicillin-binding protein 1B [Streptococcus pneumoniae
Hungary19A-6]
Length = 821
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|168486914|ref|ZP_02711422.1| penicillin-binding protein 1b [Streptococcus pneumoniae CDC1087-00]
gi|183570144|gb|EDT90672.1| penicillin-binding protein 1b [Streptococcus pneumoniae CDC1087-00]
Length = 821
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|38141967|dbj|BAD00786.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
Length = 821
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|148984395|ref|ZP_01817683.1| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Streptococcus
pneumoniae SP3-BS71]
gi|38141965|dbj|BAD00785.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38141971|dbj|BAD00788.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38141977|dbj|BAD00791.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38141993|dbj|BAD00799.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38141997|dbj|BAD00801.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|147923172|gb|EDK74286.1| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Streptococcus
pneumoniae SP3-BS71]
gi|301800845|emb|CBW33502.1| penicillin-binding protein 1B [Streptococcus pneumoniae OXC141]
Length = 821
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|461629|sp|P80298|BLAC_PROVU RecName: Full=Beta-lactamase; AltName: Full=Penicillinase
Length = 271
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 71/234 (30%), Gaps = 9/234 (3%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ + AS +K+M + +++ +L I I+K+ + + M+L
Sbjct: 38 GEERFAMASTSKVMAVAAILKESEKQAGLLDKNIIITKSDLVAYSPITEKHLATGMSLAQ 97
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ S N I + L K +F + +N+ + L A
Sbjct: 98 LSAATLQYSDNTAMNKILDYLGGPSKVTQFARSINDVTYRLDRKEPELNTAIHGDPRDTT 157
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF-TCA 223
+ L D Q+ ++ A G KTG
Sbjct: 158 SPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTTGDHSIKAGLPKHWIVGDKTGSGDYG 217
Query: 224 SGFNIVASAIQGDQSLIAVIL------GALDRNTRNKVSASLLSMGFYNKTDRK 271
+ +I + LI V+ A R + +++ F N + +K
Sbjct: 218 TTNDIAVIWPKNHAPLILVVYFTQQEQDAKYRKDIIVKATEIVTKEFSNTSQKK 271
>gi|255325833|ref|ZP_05366925.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Corynebacterium tuberculostearicum SK141]
gi|255297045|gb|EET76370.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Corynebacterium tuberculostearicum SK141]
Length = 415
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKL 59
++DT TG V+ + D PAS TK+
Sbjct: 71 VIDTETGDVVWQRDADKRLTPASSTKV 97
>gi|311740138|ref|ZP_07713971.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Corynebacterium pseudogenitalium ATCC 33035]
gi|311304834|gb|EFQ80904.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Corynebacterium pseudogenitalium ATCC 33035]
Length = 428
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKL 59
++DT TG V+ + D PAS TK+
Sbjct: 84 VIDTETGDVVWQRDADKRLTPASSTKV 110
>gi|66817024|gb|AAY56816.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
Length = 752
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 394 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 453
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 454 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 511
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 512 GYEIPEYGIESLPMGGGIEVTVAQH 536
>gi|46244164|gb|AAP93846.1| beta-lactamase [Klebsiella pneumoniae]
Length = 157
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 7/127 (5%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY-------YTLLDTNTGHVIAENYPDHPWNPASL 56
+ ++A L+ + + + +D +G + D + S
Sbjct: 1 IISLLAALPLAVHASPQPLEQIKQSESQLSGRVGMIEMDLASGRTLTAWRADERFPMIST 60
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++ V + + L I + S MT+ I S
Sbjct: 61 FKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPVSEKHLADGMTVGELCAAAITMSD 120
Query: 117 NDIAVAI 123
N A +
Sbjct: 121 NSAANLL 127
>gi|254431801|ref|ZP_05045504.1| beta-lactamase [Cyanobium sp. PCC 7001]
gi|197626254|gb|EDY38813.1| beta-lactamase [Cyanobium sp. PCC 7001]
Length = 333
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 52/163 (31%), Gaps = 9/163 (5%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ LS + L+ A+ LL + G AE D AS K +
Sbjct: 59 LTALSESWARLAAAQQGLQASGFLLVLDDGR-YAELQADQALPAASSIKTPILLAGLEDV 117
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCK 129
K P+ ++K + T +++ +++ A +
Sbjct: 118 DAGKIRWNEPLPLTKEVVGGGAGWMASRPVGTRFPFFESATEMIRVSDNSATNLL----I 173
Query: 130 TEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG--HYTTARDM 170
+ +N + LGL + + + + T+ARD+
Sbjct: 174 KRLGGKEKLNARFQALGL--PATVINNWLPDLEGTNTTSARDL 214
>gi|33597187|ref|NP_884830.1| putative beta-lactamase [Bordetella parapertussis 12822]
gi|33601032|ref|NP_888592.1| putative beta-lactamase [Bordetella bronchiseptica RB50]
gi|33573614|emb|CAE37898.1| Putative beta-lactamase [Bordetella parapertussis]
gi|33575467|emb|CAE32545.1| Putative beta-lactamase [Bordetella bronchiseptica RB50]
Length = 305
Score = 41.1 bits (94), Expect = 0.22, Method: Composition-based stats.
Identities = 30/220 (13%), Positives = 58/220 (26%), Gaps = 3/220 (1%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
+ D + S KL+ A V + L I + ++ M
Sbjct: 68 FSHRADERFPMCSTFKLLAAGAVLARADRGDDSLRRLIRYGAADIVAYSPVTGPRQAEGM 127
Query: 103 TLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
TL+ + + +S N + + + + + L T A
Sbjct: 128 TLEQLCEAAVTRSDNTAGNLLLSTLGGPPGLTAYARGLGDRMTRLDRIETALNEARPGDP 187
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
T A L + D Q ++ + + A G KTG
Sbjct: 188 RDTTTPAAMAGNLQRLLLGDALQSASRQRLADWLLASQTGDTRLRAGLPAGWRIGDKTGA 247
Query: 221 -TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
+ +I + ++ +R +A L
Sbjct: 248 GGHGTNNDIGVIWPRDGAPVLISAYLTQSSASREAQNAVL 287
>gi|229184731|ref|ZP_04311930.1| Beta-lactamase [Bacillus cereus BGSC 6E1]
gi|228598745|gb|EEK56366.1| Beta-lactamase [Bacillus cereus BGSC 6E1]
Length = 312
Score = 41.1 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
++T T IA P+ + AS K + A V+ + L IT +K
Sbjct: 75 INTGTKQTIAYR-PNERFAFASTYKALAAGVLLQ--QNSTMKLDEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N + K +K ++ M + T
Sbjct: 132 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFNKIGGPKGYEKALRQMGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 252 WIVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|157835256|pdb|2JE5|A Chain A, Structural And Mechanistic Basis Of Penicillin Binding
Protein Inhibition By Lactivicins
gi|157835257|pdb|2JE5|B Chain B, Structural And Mechanistic Basis Of Penicillin Binding
Protein Inhibition By Lactivicins
gi|164519445|pdb|2JCI|B Chain B, Structural Insights Into The Catalytic Mechanism And The
Role Of Streptococcus Pneumoniae Pbp1b
Length = 720
Score = 41.1 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 354 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 413
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 414 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 471
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 472 GYEIPEYGIESLPMGGGIEVTVAQH 496
>gi|257815405|gb|ACV69996.1| extended-spectrum beta-lactamase BEL-2 [Pseudomonas aeruginosa]
Length = 283
Score = 41.1 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 35/216 (16%), Positives = 65/216 (30%), Gaps = 5/216 (2%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP-ITISKNASEYPPSNST 95
G++I + + S KL A +V S + + S EY P+
Sbjct: 44 ENGNLIQGYRANERFAMCSTFKLPLAALVLSRIDAGEENPERKLHYDSAFLEEYAPAAKR 103
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATHFM 153
+ MT+ A++ + S N A + + + K+ + + +
Sbjct: 104 YVATGYMTVTEAIQSALQLSDNAAANLLLKEVGGPPLLTKYFRSLGDKVSRFDRIEPTLN 163
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+ T +S I D Y Q++ L I + T A
Sbjct: 164 TNTPGDERDTTTPMSMAQTVSKLIFGDTLTYKSKGQLRRLLIGNQTGDKTIRAGLPDSWV 223
Query: 214 DGMKTG-FTCASGFNIVASAIQGDQSLI-AVILGAL 247
G KTG ++ + + +V A
Sbjct: 224 TGDKTGSCANGGRNDVAFFITTAGKKYVLSVYTNAP 259
>gi|228933797|ref|ZP_04096643.1| Beta-lactamase [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228825869|gb|EEM71656.1| Beta-lactamase [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
Length = 332
Score = 41.1 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T +A P+ + AS K + A V+ + L IT +K
Sbjct: 95 IDTGTKQTVAYR-PNERFAFASTYKALAAGVLLQ--QNSTMKLDEVITYTKEDLVDYSPV 151
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N + K +K ++ M + T
Sbjct: 152 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFNKIGGPKGYEKALRQMGDRVTMSDRFETE 211
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 212 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTEWMKGNATGDKLIRAGVPTN 271
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 272 WVVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKGATYD 316
>gi|20150074|pdb|1HZO|A Chain A, Structure Of Class A Cephalosporinase From Proteus
Vulgaris K1
gi|20150075|pdb|1HZO|B Chain B, Structure Of Class A Cephalosporinase From Proteus
Vulgaris K1
Length = 271
Score = 41.1 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 3/200 (1%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ + AS +K+M V +++ +L ITI K+ + + MTL
Sbjct: 38 GEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKHLTTGMTLAE 97
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ S N I + L K +F + +N+ + L A
Sbjct: 98 LSAATLQYSDNTAMNKILDYLGGPAKVTQFARSINDVTYRLDRKEPELNTAIHGDPRDTT 157
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
+ L D Q+ N+ A G KTG
Sbjct: 158 SPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTTGDNSIKAGLPKHWVVGDKTGSGDYG 217
Query: 225 GFNIVASAIQGDQ-SLIAVI 243
N +A + LI V+
Sbjct: 218 TTNDIAVIWPENHAPLILVV 237
>gi|323344811|ref|ZP_08085035.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella oralis ATCC 33269]
gi|323094081|gb|EFZ36658.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella oralis ATCC 33269]
Length = 423
Score = 41.1 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D + + + PAS K++TA
Sbjct: 81 MVYDLDADSTLYRHNERQLMRPASTMKIITAIAAIDK 117
>gi|209528054|ref|ZP_03276533.1| conserved hypothetical protein [Arthrospira maxima CS-328]
gi|209491510|gb|EDZ91886.1| conserved hypothetical protein [Arthrospira maxima CS-328]
Length = 451
Score = 41.1 bits (94), Expect = 0.23, Method: Composition-based stats.
Identities = 29/205 (14%), Positives = 61/205 (29%), Gaps = 3/205 (1%)
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
P +PASL K+ A + E++ I + S+ + + +L
Sbjct: 227 RGSQTPASPASLIKVPVAIALLHKAAEEQVSFDQEIYVEGGNFTEDASS--IRARQSYSL 284
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK-NLGLSATHFMNAHGVVQHGH 163
+ +I S+N + + L + + K + G
Sbjct: 285 QMLMAQMIDHSSNIATNQLIDYLSADYINKLLERHGYQKTRVQFKLMGDRIMPFRPGRGR 344
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ D ++ I+ L + + G G KTG
Sbjct: 345 NSMTSDELTEMMVEIYNYEHPHSELLIEALGHQYDREIGYQALQGLKAQWLGEKTGQNSR 404
Query: 224 SGFNIVASAIQGDQSLIAVILGALD 248
+A++I G++ +I + +
Sbjct: 405 VIGTTLAASIDGERYIITITDNSAG 429
>gi|153807119|ref|ZP_01959787.1| hypothetical protein BACCAC_01396 [Bacteroides caccae ATCC 43185]
gi|149130239|gb|EDM21449.1| hypothetical protein BACCAC_01396 [Bacteroides caccae ATCC 43185]
Length = 468
Score = 41.1 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIF----------PFLSIAETNKLPYYT-LLDTNTGHVIAENYPDH 49
M++ L+++A+++ + + D + D
Sbjct: 1 MKKVLLLVALSVCLLPLWGQRDFSQIDSLIKKMLPEASEVGISVYDLTAKRPLYSYRADK 60
Query: 50 PWNPASLTKLMTAYVVF 66
PAS KL+ A
Sbjct: 61 LSRPASTMKLLMAITAL 77
>gi|323483052|ref|ZP_08088445.1| beta-lactamase [Clostridium symbiosum WAL-14163]
gi|323403592|gb|EGA95897.1| beta-lactamase [Clostridium symbiosum WAL-14163]
Length = 288
Score = 41.1 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 26/207 (12%), Positives = 54/207 (26%), Gaps = 11/207 (5%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-YPPSNSTFKKGST 101
D AS+ KL+ + + + L I I++ + G
Sbjct: 35 FSIDGDRRVPSASMIKLVIMAELMRRVGAGELSLEEKIKITQEMRTGGDGVLKELEPGHE 94
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+L L L+I+ S N+ + + L + +N + LGL +
Sbjct: 95 FSLREILTLMIIVSDNEATNILIQML------GMDRINRMAAELGLKEAVLGRKMMDSEA 148
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIK----GLEIKGKKYPNTNWAVGTFLGADGMK 217
+ + K L+I ++ + + +
Sbjct: 149 KKQGRDNFICADDIMLILKKIYEGSCVDRKASALMLDILKRQQQSGRLQLYLPEDVEVAH 208
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVIL 244
N + I +L
Sbjct: 209 KCGDLDFLENDGGIILLPGHPYILAVL 235
>gi|223868933|gb|ACN22483.1| extended spectrum beta-lactamase [Providencia rettgeri]
Length = 308
Score = 41.1 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 21/229 (9%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L + +++ K
Sbjct: 62 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 121
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ L+ S + + L + +++ +++G+ T +
Sbjct: 122 VPVQQLLQYSVSHSDNVACDLLFELV-GGPAALHDYIQSMGIKETAVVANEAQ--MHADD 178
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------------- 211
+ S + + + + +
Sbjct: 179 QVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 238
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G G+K G T A+ ++ + + L+ + +R +
Sbjct: 239 KTGTSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 286
>gi|311895544|dbj|BAJ27952.1| putative cell division protein FtsI [Kitasatospora setae KM-6054]
Length = 718
Score = 41.1 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 46/165 (27%), Gaps = 26/165 (15%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIA-------------ENYPDH--------PWNPA 54
+ Y + D TG V+A D + P
Sbjct: 367 AITDQVANAGAEKGYVIVQDVRTGQVLAMATSPGFDPNDLASARADQLGNAALQDAYEPG 426
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S KLMT V KA T + + + T L ++ K
Sbjct: 427 STAKLMTMAAVLD---TGKANWDTHVEVPN--TLQRADRVFHDDIDHETWYLTLAGVLAK 481
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
S+N + AE L T+ + + + + G+ + G
Sbjct: 482 SSNIGTIEAAEHLGATQAESNKVLADYLDRFGIGKPSGLGFPGET 526
>gi|319792163|ref|YP_004153803.1| beta-lactamase [Variovorax paradoxus EPS]
gi|315594626|gb|ADU35692.1| Beta-lactamase [Variovorax paradoxus EPS]
Length = 290
Score = 41.1 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 25/210 (11%), Positives = 48/210 (22%), Gaps = 32/210 (15%)
Query: 30 YYTLLDTNTGH--VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
+ +LD+ T V+ D ++PAS K+ + + K I
Sbjct: 66 TWVVLDSATAKLTVVDRRRADKRYSPASTFKIPNSLIALETGAVKDID-----EILPYGG 120
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+ + L I + + + MN L
Sbjct: 121 GTYKRKEWERDMNLRDAIRVSHLPIYRGVAR-------------RIGLARMNEWIAKLHY 167
Query: 148 SATHF---MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
++ V + A + L + +
Sbjct: 168 GNETLDTEVDQFWVNDKLQISAAEQVRFLMR---------LAQRSLPMSTRTQDMVHEIT 218
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
A KTG+ GF++
Sbjct: 219 LLEKMPTHALHGKTGWYETPGFSLGWWVGW 248
>gi|126700815|ref|YP_001089712.1| putative penicillin-binding protein [Clostridium difficile 630]
gi|115252252|emb|CAJ70093.1| putative penicillin-binding protein [Clostridium difficile]
Length = 320
Score = 41.1 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 21/219 (9%), Positives = 55/219 (25%), Gaps = 14/219 (6%)
Query: 36 TNTGHVIAEN-----YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
G ++ E D ++ AS+TK + + ++ + + +
Sbjct: 26 ARKGKIVFEKYYNGYNADDTFHVASVTKSIISALIGIAIDKGYIKDVDQKVVDFFPEYTC 85
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ KK T+ + ++ K + + + +G
Sbjct: 86 SPSEICKKAVTIRHLLTMTAPYPFKNMTESLERLCKQKDWIKYTLNQLGQKGE-IGTFKY 144
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
H + TT + + + + + N
Sbjct: 145 SSAGTHLLSAIITKTTGKSAREFANEYLFKPIGMKVIPDYDMKDFGFEDFFGKNLKGWAK 204
Query: 211 L--GADGMKTGFTCASGFNIVASA------IQGDQSLIA 241
G G T ++ + I ++ +I+
Sbjct: 205 DRQGYSIGGWGLTLSARDMLRFGFLYLNDGIWNNKRIIS 243
>gi|227532818|ref|ZP_03962867.1| beta-lactamase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227189559|gb|EEI69626.1| beta-lactamase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 261
Score = 41.1 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 34/218 (15%), Positives = 61/218 (27%), Gaps = 11/218 (5%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ L+ +T HV+ D P+ ASL KL A V + + L ++ S
Sbjct: 20 KHALLV-ADTRHVLFGAQVDQPFPAASLIKLGIAAFVKEKAADDPSQL--ERQVTLPESV 76
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL- 147
F + + L L++ S N A+ + + + L
Sbjct: 77 GGAGVLRFMSPQAWRVRDLLTLMLTVSDNLATNALLTTYGLPTIAAWLTRHYSGVQLRRP 136
Query: 148 -SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
+ F + + + R + + N+
Sbjct: 137 LMQSTFDGDNMITASAAWQLLRALLTSDGNEPAADICAQALRHQQNRTKLLLAPTMENFV 196
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
G KTG + A + L AV+L
Sbjct: 197 -----GWLAGKTGELPHCEHDAACFAA-EGERLYAVVL 228
>gi|188988411|gb|ACD67727.1| beta-lactamase PER-5 [Acinetobacter baumannii]
gi|297166888|gb|ADI16146.1| PER [Acinetobacter baumannii]
Length = 273
Score = 41.1 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 27/226 (11%), Positives = 69/226 (30%), Gaps = 15/226 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPPSNSTFKKGSTM 102
P + S+ KL A +V + + K L + +++ + + P ++
Sbjct: 46 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 105
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV--Q 160
L V ++ +A + L ++ + + H Q
Sbjct: 106 VPVQQLLQYSVSHSDSVACDLLFELVGGPAALHDYIQSMGIKETAVVANEAQMHADDQVQ 165
Query: 161 HGHYTTARDMAILSWRIKTDFP--------QYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ ++T+ + A + + + + + + K V G
Sbjct: 166 YQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAHKTG 225
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G+K G T A+ ++ + + L+ + +R +
Sbjct: 226 TSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 270
>gi|126174299|ref|YP_001050448.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica OS155]
gi|125997504|gb|ABN61579.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica OS155]
Length = 502
Score = 41.1 bits (94), Expect = 0.24, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 19/53 (35%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
S I+ + +D + VI + + PAS KL+TA
Sbjct: 38 SLSQAVSKISPRHSQIALLAMDMSNNQVIFSQQAETLFIPASTQKLLTAVSAM 90
>gi|326386583|ref|ZP_08208205.1| Beta-lactamase [Novosphingobium nitrogenifigens DSM 19370]
gi|326208898|gb|EGD59693.1| Beta-lactamase [Novosphingobium nitrogenifigens DSM 19370]
Length = 325
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 33/280 (11%), Positives = 81/280 (28%), Gaps = 39/280 (13%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPY---------------YTL-----------LD 35
R+ ++A + + A ++ P + +D
Sbjct: 9 RKISTVLAALVAVPALLATTPAVQSRSPAPVQDQHDLAIQRTVEAIVARARGRVGVAAVD 68
Query: 36 TNTG-HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP-ITISKNASEYPPSN 93
+ G V+ D P+ AS K+ A + +++ + L + A +
Sbjct: 69 LDGGGQVLV--NGDMPFPMASTAKVAVAATFLAGVEQGRHRLDQQLPMMMPVAERSHSAV 126
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATH 151
+ + G MT ++L+I +S N + ++ ++ ++L +
Sbjct: 127 AAVRPGPVMTAQQLMELMITRSNNHATDGLIAAVGGIGAVNSWLSKNGIVGQHLDSTMAT 186
Query: 152 FMNAHGVVQH----GHYTTARDMAILSWRIKTDFPQYMHYFQIK---GLEIKGKKYPNTN 204
+ G + +T++ A+ + D + + N
Sbjct: 187 LVRDDGHINPAKTIDTHTSSTPRAMAALLAAIDRGGALSPQSRAVLLDTMTRTSTGKNRM 246
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
A KTG ++ + + L +
Sbjct: 247 RAGLPEGTIFAHKTGTLSGVTDDVGIIRLPDGRHLALAVF 286
>gi|196043277|ref|ZP_03110515.1| beta-lactamase Bla1 [Bacillus cereus 03BB108]
gi|225864486|ref|YP_002749864.1| beta-lactamase Bla1 [Bacillus cereus 03BB102]
gi|196025586|gb|EDX64255.1| beta-lactamase Bla1 [Bacillus cereus 03BB108]
gi|225790653|gb|ACO30870.1| beta-lactamase Bla1 [Bacillus cereus 03BB102]
Length = 276
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
++T T IA P+ + AS K + A V+ + L IT +K
Sbjct: 39 INTGTKQTIAYR-PNERFAFASTYKALAAGVLLQ--QNSTMKLDEVITYTKEDLVDYSPV 95
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N + K +K ++ M + T
Sbjct: 96 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFNKIGGPKGYEKALRQMGDRVTMSDRFETE 155
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 156 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTEWMKGNATGDKLIRAGVPTD 215
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 216 WIVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 260
>gi|145588349|ref|YP_001154946.1| peptidoglycan glycosyltransferase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046755|gb|ABP33382.1| peptidoglycan synthetase FtsI [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 590
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 33/133 (24%), Gaps = 24/133 (18%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHPW-------------- 51
+ N K +LDT TG ++A P+
Sbjct: 235 FLAYNAVKNAVEEHHAKAGGAVVLDTQTGEILALANYPSYNPNDRRFLSGEQLRNRVMTD 294
Query: 52 --NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
P S K +T + T + I P + +T+ ++
Sbjct: 295 TFEPGSTIKPLTISIALEK---GAVTPNTNMVIGAKYLVGPKPITDTHPYGNLTVAQIIQ 351
Query: 110 LLIVKSANDIAVA 122
IA+
Sbjct: 352 KSSNIGTAKIAMN 364
>gi|584848|sp|P37321|BLE1_PSEAE RecName: Full=Extended-spectrum beta-lactamase PER-1; Flags:
Precursor
gi|396145|emb|CAA79968.1| extended-spectrum beta-lactamase PER-1 [Pseudomonas aeruginosa]
gi|48596235|emb|CAF18433.1| extended-spectrum beta-lactamase PER-1 [Pseudomonas aeruginosa]
gi|58003741|gb|AAW62294.1| PER-1 [Pseudomonas aeruginosa]
gi|60100164|gb|AAX13245.1| PER-1 [Pseudomonas aeruginosa]
gi|71361069|emb|CAF29487.1| extended-spectrum beta-lactamase PER-1 [Alcaligenes faecalis]
gi|146216708|gb|ABQ10556.1| extended-spectrum beta-lactamase PER-1 [Acinetobacter baumannii]
gi|295002611|gb|ADF59064.1| extended-spectrum beta-lactamase PER-1 [Acinetobacter baumannii]
Length = 308
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 21/229 (9%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L + +++ K
Sbjct: 62 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 121
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ L+ S + + L + +++ +++G+ T +
Sbjct: 122 VPVQQLLQYSVSHSDNVACDLLFELV-GGPAALHDYIQSMGIKETAVVANEAQ--MHADD 178
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------------- 211
+ S + + + + +
Sbjct: 179 QVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 238
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G G+K G T A+ ++ + + L+ + +R +
Sbjct: 239 KTGTSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 286
>gi|167906254|ref|ZP_02493459.1| class A beta-lactamase [Burkholderia pseudomallei NCTC 13177]
Length = 314
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 78/272 (28%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 30 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 88
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K G+ M++
Sbjct: 89 ERFPFCSTSKMMLCAAVLARSASEPALLQRRIAYAKGDLIRYSPIIEQHVGAGMSVAELC 148
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + + + + + L A + T
Sbjct: 149 AATLQYSDNTAANLLMALLGGPQAVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 208
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 209 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 268
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 269 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 300
>gi|118477909|ref|YP_895060.1| beta-lactamase [Bacillus thuringiensis str. Al Hakam]
gi|118417134|gb|ABK85553.1| beta-lactamase [Bacillus thuringiensis str. Al Hakam]
Length = 316
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
++T T IA P+ + AS K + A V+ + L IT +K
Sbjct: 79 INTGTKQTIAYR-PNERFAFASTYKALAAGVLLQ--QNSTMKLDEVITYTKEDLVDYSPV 135
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N + K +K ++ M + T
Sbjct: 136 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFNKIGGPKGYEKALRQMGDRVTMSDRFETE 195
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 196 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTEWMKGNATGDKLIRAGVPTD 255
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 256 WIVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 300
>gi|156740893|ref|YP_001431022.1| beta-lactamase [Roseiflexus castenholzii DSM 13941]
gi|156232221|gb|ABU57004.1| beta-lactamase [Roseiflexus castenholzii DSM 13941]
Length = 353
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD + AS+TKL TA V + L P
Sbjct: 53 PDDLFPVASITKLATALAVLRLVDRGLIELDDP 85
>gi|6580705|emb|CAB63491.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 303
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 60/203 (29%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G I + D + S K + A V S + + A+L T + +
Sbjct: 62 LLDTASGRRI-GHRQDERFPMCSTFKSVLAATVLSQAERRPALLDTRVPVRDADLLSHAP 120
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +
Sbjct: 121 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRTSGDAVSRSDRLEP 180
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A L + + Q Q+ I + A
Sbjct: 181 ELNSFAKGDPRDTTTPGAMAATLQRVVLGEVLQPASRQQLADWLIDNETGDACLRAGLGK 240
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 241 RWRVGDKTGSNGEDARNDIAVLW 263
>gi|16799276|ref|NP_469544.1| hypothetical protein lin0199 [Listeria innocua Clip11262]
gi|16412618|emb|CAC95432.1| lin0199 [Listeria innocua Clip11262]
Length = 257
Score = 41.1 bits (94), Expect = 0.25, Method: Composition-based stats.
Identities = 29/234 (12%), Positives = 60/234 (25%), Gaps = 16/234 (6%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SK 84
+ D V+ + + AS+ KL F + +K+ L T I S+
Sbjct: 14 IDSKALFISDGE--KVLFAENENQLFTAASVIKLPIYLYFFEKIAKKELDLQTDFQIPSE 71
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+ TL+ L L+I S N + E + + + +
Sbjct: 72 KVVAGAGIIQILPQKRIWTLEELLHLMIAVSDNTATNQLI------ELATITKLQSWLRE 125
Query: 145 LGLSATHFMNAHGVV--QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ + + A+ ++ + + +
Sbjct: 126 NNWEDGIQLERQMMDFTTVKQNKISAKAAVTIFQKIMMLSEAYPDLKETIRRPLLNQQFR 185
Query: 203 TNWAVGTFL-GADG----MKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+N G G KTG ++ +G A +
Sbjct: 186 SNLVGTLEEAGISGLQMLNKTGELKNIQHDVAVFEYKGKTRFAAALTNNTGLEA 239
>gi|313669015|ref|YP_004049299.1| peptidase [Neisseria lactamica ST-640]
gi|313006477|emb|CBN87940.1| putative peptidase [Neisseria lactamica 020-06]
Length = 469
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + +G V+ ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELGSGRVVIDHRADVPVNPASTMKLVTAFAAFK 70
>gi|313205965|ref|YP_004045142.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Riemerella
anatipestifer DSM 15868]
gi|312445281|gb|ADQ81636.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Riemerella
anatipestifer DSM 15868]
Length = 473
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ D + +I+ P PAS TKL+T
Sbjct: 67 VVYDPKSKQIISSCNEATPLVPASTTKLLT 96
>gi|309379652|emb|CBX21823.1| penicillin-binding protein 3 [Neisseria lactamica Y92-1009]
Length = 469
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + +G V+ ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELGSGRVVIDHRADVPVNPASTMKLVTAFAAFK 70
>gi|298104552|gb|ADI55020.1| extended spectrum beta lactamase PER-1 [Aeromonas caviae]
Length = 308
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 21/229 (9%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L + +++ K
Sbjct: 62 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 121
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ L+ S + + L + +++ +++G+ T +
Sbjct: 122 VPVQQLLQYSVSHSDNVACDLLFELV-GGPAALHDYIQSMGIKETAVVANEAQ--MHADD 178
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------------- 211
+ S + + + + +
Sbjct: 179 QVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 238
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G G+K G T A+ ++ + + L+ + +R +
Sbjct: 239 KTGTSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 286
>gi|296315108|ref|ZP_06865049.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria polysaccharea ATCC 43768]
gi|296838021|gb|EFH21959.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Neisseria polysaccharea ATCC 43768]
Length = 469
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + +G V+ ++ D P NPAS KL+TA+ F
Sbjct: 33 AVYVQELGSGRVVIDHRADVPVNPASTMKLVTAFAAFK 70
>gi|254461865|ref|ZP_05075281.1| penicillin-binding protein 2 [Rhodobacterales bacterium HTCC2083]
gi|206678454|gb|EDZ42941.1| penicillin-binding protein 2 [Rhodobacteraceae bacterium HTCC2083]
Length = 647
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 13/112 (11%), Positives = 24/112 (21%), Gaps = 5/112 (4%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
Y L D + +A + P S K++TA +
Sbjct: 301 ADYAFLRDND-HRPLASKTVQDAYPPGSTFKMVTALAALEA---GLITAEDTVHC-PGHL 355
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
E K + N L + + + +
Sbjct: 356 EVSGRKFHCWKPAGHGHMNLELSLRESCDVYYYDLALKVGIENISAMARKLG 407
>gi|226306155|ref|YP_002766115.1| D-alanyl-D-alanine carboxypeptidase [Rhodococcus erythropolis
PR4]
gi|226185272|dbj|BAH33376.1| putative D-alanyl-D-alanine carboxypeptidase [Rhodococcus
erythropolis PR4]
Length = 530
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
Y L+D T V+ N D AS TK T +
Sbjct: 59 SYLLVDPATDEVVYSNNADSSMFLASQTKHFTVGTAYD 96
>gi|189464722|ref|ZP_03013507.1| hypothetical protein BACINT_01066 [Bacteroides intestinalis DSM
17393]
gi|189436996|gb|EDV05981.1| hypothetical protein BACINT_01066 [Bacteroides intestinalis DSM
17393]
Length = 475
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ D G + D PAS KL+T S
Sbjct: 51 IYDLTDGKSLYTYQADKLSRPASTMKLLTTITALSHPD 88
>gi|258650636|ref|YP_003199792.1| beta-lactamase [Nakamurella multipartita DSM 44233]
gi|258553861|gb|ACV76803.1| beta-lactamase [Nakamurella multipartita DSM 44233]
Length = 381
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
+ + AS TK MTA VV +E K LT P +SK S P +S +
Sbjct: 44 DANTHFRIASNTKTMTAAVVLQLAQEGKLELTDP--VSKYVSGVPGGDSITVEQLLKMRT 101
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEK 132
+ ++
Sbjct: 102 GLYNYTNAQQMATSLDDDPTREWTPQE 128
>gi|255593455|ref|XP_002535872.1| Beta-lactamase OXA-18 precursor, putative [Ricinus communis]
gi|223521673|gb|EEF26512.1| Beta-lactamase OXA-18 precursor, putative [Ricinus communis]
Length = 411
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 30/272 (11%), Positives = 70/272 (25%), Gaps = 34/272 (12%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYT------LLDTNTGHVI-AENYPDHPWNPASLTK 58
+ A+ S + L++ + L+D TG + E D PAS
Sbjct: 140 LATLAALGSVLAASLALQPSLASQSAAQLSCVALVDAATGRQLRREGQCDARATPASTFN 199
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
++ A + + S + ++ G T ++ S+
Sbjct: 200 IVVALMGYD---------------SGILVDEHTPVFKYQPGYTTWNHEDWRIDTDPSSWI 244
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+ + T + + G G ++ + +S +
Sbjct: 245 KYSNLWFAQQVTTRLGASGLQGYVNRFGYGNRDLSGTPGENNGLTWSWVQSSLQISADEQ 304
Query: 179 TDFPQYMHYFQIKGL-EIKGKKYPNTNWAVGTFLGADGMKTG-----------FTCASGF 226
F + + Q+ + + KTG
Sbjct: 305 IAFLRKIVNRQLPISAKAYDMTARILHPQTLANGWTIYGKTGTASPSLADGSEDNSRQYG 364
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVSAS 258
V A +G ++++ + R + +
Sbjct: 365 WYVGWATKGGRTIVFANMRLDQRQEEYAGART 396
>gi|94991763|ref|YP_599862.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS2096]
gi|94545271|gb|ABF35318.1| D-alanyl-D-alanine carboxypeptidase [Streptococcus pyogenes
MGAS2096]
Length = 166
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 11/115 (9%)
Query: 188 FQIKGLEIKGKKYPNTNW----AVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+++ N G DG+KTG + ++ FN + +A +G LI ++
Sbjct: 1 MHTMVGTPYEEEFHTYNHSLPDNQFGMKGVDGLKTGSSPSAAFNAMITAKRGKTRLITIV 60
Query: 244 LGALDRNT------RNKVSASLLSMGFY-NKTDRKKINYIIKDFYQQNLSNEVPN 291
+G D + R+ +L GF +KT KK ++ Q P
Sbjct: 61 MGVGDWSDQNGEFYRHPFVNALTEKGFKDSKTLSKKARQKLEKLVPQTKKETSPK 115
>gi|33863404|ref|NP_894964.1| putative beta-lactamase [Prochlorococcus marinus str. MIT 9313]
gi|33640853|emb|CAE21308.1| putative beta-lactamase [Prochlorococcus marinus str. MIT 9313]
Length = 386
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 40/139 (28%), Gaps = 10/139 (7%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ + L+ + G AE + AS K V + + P+ ++K
Sbjct: 115 DLQASAFLLV-LDDGR-YAELSAETALPAASSIKTAILLVALELIDSGQLSWNEPLKLTK 172
Query: 85 NASEYPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
K GS +I S N + + + +N
Sbjct: 173 EIIGGGAGWMASKPLGSQFPAHEVATEMIRVSDNTATNLLIQRI-----GGKDVLNARFN 227
Query: 144 NLGLSATHFMNAHGVVQHG 162
LGLS+ + + +
Sbjct: 228 ALGLSS--TVVNNWLPDLQ 244
>gi|260063286|ref|YP_003196366.1| hypothetical protein RB2501_00711 [Robiginitalea biformata
HTCC2501]
gi|88783380|gb|EAR14552.1| hypothetical protein RB2501_00711 [Robiginitalea biformata
HTCC2501]
Length = 432
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
L+D + + + + PAS KL T Y
Sbjct: 54 LLVDATSRDTLFSLNAEKYFTPASNVKLFTLYAALK 89
>gi|296101495|ref|YP_003611641.1| beta-lactam binding protein AmpH [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295055954|gb|ADF60692.1| beta-lactam binding protein AmpH [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 388
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 34/112 (30%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-----------------------YYTLLDTN 37
M++ L+ A A+ + F A+ P ++D N
Sbjct: 1 MKRCLLFFA-ALCAVSFSTAQAAQPLTAPVLASDIADRYANLIYYGSGATGMAMVVIDGN 59
Query: 38 T------GHVIAENYP----DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
G N D ASLTKLMT+ ++ L + L P
Sbjct: 60 QRVFRSFGETRPGNNVHPQLDSVIRIASLTKLMTSEMLVKLLDQGVVKLDDP 111
>gi|255693329|ref|ZP_05417004.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides finegoldii DSM 17565]
gi|260620905|gb|EEX43776.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides finegoldii DSM 17565]
Length = 467
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 9/77 (11%), Positives = 20/77 (25%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIF----------PFLSIAETNKLPYYT-LLDTNTGHVIAENYPDH 49
M+ ++ + + + + D + + +
Sbjct: 1 MKNIILSVLFSFCFLPLWGQKDFSQIDSLIKQLLPESSEVGISVYDLTAKKPLYDYRAEK 60
Query: 50 PWNPASLTKLMTAYVVF 66
PAS KL+TA
Sbjct: 61 LSRPASTMKLLTAITAL 77
>gi|148654410|ref|YP_001274615.1| beta-lactamase [Roseiflexus sp. RS-1]
gi|148566520|gb|ABQ88665.1| beta-lactamase [Roseiflexus sp. RS-1]
Length = 354
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD + AS+TKL TA V + L P
Sbjct: 53 PDDLFPVASITKLATALAVLRLVDRGLIALDDP 85
>gi|86742986|ref|YP_483386.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Frankia sp. CcI3]
gi|86569848|gb|ABD13657.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Frankia sp. CcI3]
Length = 483
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 17/48 (35%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
A ++ P ++D +G V+ + P PAS K
Sbjct: 63 AAVAARLAGPLGDPVLARPAAFVIDAQSGRVLLDVRSRIPVAPASTLK 110
>gi|49185391|ref|YP_028643.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Sterne]
gi|49179318|gb|AAT54694.1| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus
anthracis str. Sterne]
Length = 65
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAEN 45
L + A++ F + L+D N+G V+ +
Sbjct: 11 LLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKK 52
>gi|86139261|ref|ZP_01057831.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter sp. MED193]
gi|85824105|gb|EAQ44310.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Roseobacter sp. MED193]
Length = 502
Score = 41.1 bits (94), Expect = 0.26, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + TG + + + PAS+ K +TA
Sbjct: 71 VAEVKTGQELESHGGEEALPPASVAKALTALYALD 105
>gi|217422704|ref|ZP_03454207.1| class D beta-lactamase [Burkholderia pseudomallei 576]
gi|217394935|gb|EEC34954.1| class D beta-lactamase [Burkholderia pseudomallei 576]
Length = 473
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 205 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLVQ-DGDCGRRASPASTFK 260
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 261 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 318
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 319 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 354
>gi|167743907|ref|ZP_02416681.1| class D beta-lactamase [Burkholderia pseudomallei 14]
Length = 269
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 1 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLVQ-DGDCGRRASPASTFK 56
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 57 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 114
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 115 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 150
>gi|254300904|ref|ZP_04968348.1| class D beta-lactamase [Burkholderia pseudomallei 406e]
gi|157811099|gb|EDO88269.1| class D beta-lactamase [Burkholderia pseudomallei 406e]
Length = 473
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 205 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLVQ-DGDCGRRASPASTFK 260
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 261 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 318
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 319 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 354
>gi|134278795|ref|ZP_01765509.1| class D beta-lactamase [Burkholderia pseudomallei 305]
gi|134250579|gb|EBA50659.1| class D beta-lactamase [Burkholderia pseudomallei 305]
Length = 334
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 66 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLVQ-DGDCGRRASPASTFK 121
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 122 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 179
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 180 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 215
>gi|53723018|ref|YP_112003.1| beta-lactamase precursor [Burkholderia pseudomallei K96243]
gi|167821090|ref|ZP_02452770.1| class D beta-lactamase [Burkholderia pseudomallei 91]
gi|167850929|ref|ZP_02476437.1| class D beta-lactamase [Burkholderia pseudomallei B7210]
gi|167924042|ref|ZP_02511133.1| class D beta-lactamase [Burkholderia pseudomallei BCC215]
gi|226830803|ref|YP_001076749.2| class D beta-lactamase [Burkholderia pseudomallei 1106a]
gi|242312563|ref|ZP_04811580.1| class D beta-lactamase [Burkholderia pseudomallei 1106b]
gi|254184629|ref|ZP_04891218.1| class D beta-lactamase [Burkholderia pseudomallei 1655]
gi|254193984|ref|ZP_04900416.1| class D beta-lactamase [Burkholderia pseudomallei S13]
gi|45771832|emb|CAG15145.1| class D beta-lactamase precursor [Burkholderia pseudomallei]
gi|52213432|emb|CAH39475.1| beta-lactamase precursor [Burkholderia pseudomallei K96243]
gi|99644499|emb|CAK22313.1| class D beta-lactamase [Burkholderia pseudomallei]
gi|169650735|gb|EDS83428.1| class D beta-lactamase [Burkholderia pseudomallei S13]
gi|184215221|gb|EDU12202.1| class D beta-lactamase [Burkholderia pseudomallei 1655]
gi|210148321|gb|ABN92836.2| class D beta-lactamase [Burkholderia pseudomallei 1106a]
gi|223469164|gb|ACM89981.1| class D beta-lactamase [Burkholderia pseudomallei]
gi|242135802|gb|EES22205.1| class D beta-lactamase [Burkholderia pseudomallei 1106b]
Length = 269
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 1 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLVQ-DGDCGRRASPASTFK 56
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 57 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 114
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 115 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 150
>gi|167829450|ref|ZP_02460921.1| class D beta-lactamase [Burkholderia pseudomallei 9]
gi|167916207|ref|ZP_02503298.1| class D beta-lactamase [Burkholderia pseudomallei 112]
gi|226197001|ref|ZP_03792579.1| class D beta-lactamase [Burkholderia pseudomallei Pakistan 9]
gi|45502119|emb|CAF74882.1| class D beta-lactamase [Burkholderia pseudomallei]
gi|225930984|gb|EEH26993.1| class D beta-lactamase [Burkholderia pseudomallei Pakistan 9]
Length = 269
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 1 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLVQ-DGDCGRRASPASTFK 56
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 57 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 114
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 115 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 150
>gi|34558799|gb|AAQ75144.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Alvinella pompejana epibiont 6C6]
Length = 470
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPF-----------LSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
MR+ + ++ + + + + SI + + ++G IA
Sbjct: 1 MRRIISVVTLILSLSYSLYGDIPYELEYRISSIPLSKDSYSIYIKGLDSGQEIASWNTYR 60
Query: 50 PWNPASLTKLMTAY 63
PAS+ KL+T Y
Sbjct: 61 AMKPASVIKLLTTY 74
>gi|21262146|emb|CAD32564.1| beta-lactamase [Burkholderia pseudomallei]
Length = 269
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 1 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLVQ-DGDCGRRASPASTFK 56
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 57 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 114
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 115 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 150
>gi|60416709|emb|CAI43419.1| beta-lactamase [Klebsiella oxytoca]
Length = 290
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 43/285 (15%), Positives = 77/285 (27%), Gaps = 24/285 (8%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPD 48
+ L+ A+ +L + A+ + L++ + + D
Sbjct: 8 KTALMAAAVPLLLASGSLWASADAIQQKLADLEKRSGGRLGVALINTADDSQTLY--RGD 65
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M A V + ++ + I K + S MTL
Sbjct: 66 ERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKADLVVWSPITEKHLQSGMTLAELS 125
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F + + + L +A + T
Sbjct: 126 AAALQYSDNTAMNKIIGYLGGPEKVTAFALSIGDVTFRLDRMEPALNSAIPGDKRDTTTP 185
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L + Q+ + A A G KTG
Sbjct: 186 LAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWAVGDKTGAGDYGTT 245
Query: 227 NIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A + L+ V A R +A +++ G
Sbjct: 246 NDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 290
>gi|219920967|emb|CAQ76661.1| beta-lactamase [Klebsiella oxytoca]
Length = 269
Score = 41.1 bits (94), Expect = 0.27, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 70/258 (27%), Gaps = 18/258 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPD 48
+ L+ A+ +L + A+ + L++ + + D
Sbjct: 8 KTALMAAAVPLLLASGSLWASADAIQQKLADLEKHSGGRLGVALINTADDSQTLY--RGD 65
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M A V + ++ + I K + S MTL
Sbjct: 66 ERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKADLVVWSPITEKHLQSGMTLAELS 125
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F Q + + + L +A + T
Sbjct: 126 AAALQYSDNTAMNKIIGYLGGPEKVTAFAQSIGDVTFRLDRMEPALNSAIPGDKRDTTTP 185
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L + Q+ + A A G KTG
Sbjct: 186 LAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWAVGDKTGAGDYGTT 245
Query: 227 NIVASAIQGDQ-SLIAVI 243
N +A + L+ V
Sbjct: 246 NDIAVIWPENHAPLVLVT 263
>gi|310822159|ref|YP_003954517.1| d-alanyl-d-alanine
carboxypeptidase/d-alanyl-d-alanine-endopeptidase
[Stigmatella aurantiaca DW4/3-1]
gi|309395231|gb|ADO72690.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Stigmatella aurantiaca DW4/3-1]
Length = 493
Score = 40.7 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+I + L ++D TG + + PAS KL
Sbjct: 38 LAAIEQEGALAGALVVDAQTGRALFAHRERVRLLPASTMKL 78
>gi|300813348|ref|ZP_07093699.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
str. F0141]
gi|300512491|gb|EFK39640.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836
str. F0141]
Length = 262
Score = 40.7 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 27/217 (12%), Positives = 62/217 (28%), Gaps = 4/217 (1%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST- 101
D AS+ KL+ + + K K L T I + K
Sbjct: 35 FSINEDKKVRSASMIKLLIMAEIMNQSKNGKISLDTKIKVGKKDKVGGSGILKEFDCEHE 94
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQ 160
++ + L+I+ S N + + + + +N S +L
Sbjct: 95 FSIKELMTLMIIVSDNQATNILIDLVGMDNINLMGKRLNLKSASLQRKMMDIKALE--KG 152
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+Y +A D+ ++ +I ++ + + KTG
Sbjct: 153 RDNYISAIDVKVILEKIYRKTLVDEKSSELMLDILLRQHERQRLGRFLDEEVKIASKTGD 212
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ ++ ++ V++ N + +
Sbjct: 213 LDKLENDGGIFFLENKNYILVVLIDDAVTNAMAQETI 249
>gi|254192965|ref|ZP_04899400.1| class A beta-lactamase [Burkholderia pseudomallei S13]
gi|254263137|ref|ZP_04954002.1| class A beta-lactamase [Burkholderia pseudomallei 1710a]
gi|169649719|gb|EDS82412.1| class A beta-lactamase [Burkholderia pseudomallei S13]
gi|254214139|gb|EET03524.1| class A beta-lactamase [Burkholderia pseudomallei 1710a]
Length = 314
Score = 40.7 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 30 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 88
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 89 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 148
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + + + + + L A + T
Sbjct: 149 AATLQYSDNTAANLLMALLGGPQAVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 208
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 209 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 268
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 269 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 300
>gi|134279267|ref|ZP_01765980.1| class A beta-lactamase [Burkholderia pseudomallei 305]
gi|254300312|ref|ZP_04967758.1| class A beta-lactamase [Burkholderia pseudomallei 406e]
gi|134249686|gb|EBA49767.1| class A beta-lactamase [Burkholderia pseudomallei 305]
gi|157810222|gb|EDO87392.1| class A beta-lactamase [Burkholderia pseudomallei 406e]
Length = 314
Score = 40.7 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 30 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 88
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 89 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 148
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + + + + + L A + T
Sbjct: 149 AATLQYSDNTAANLLMALLGGPQAVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 208
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 209 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 268
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 269 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 300
>gi|17066638|gb|AAL35334.1|AF441237_1 beta-lactamase precursor 1b [Burkholderia pseudomallei]
Length = 295
Score = 40.7 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 11 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 69
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 70 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 129
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + + + + + L A + T
Sbjct: 130 AATLQYSDNTAANLLMALLGGPQAVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 189
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 190 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 249
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 250 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 281
>gi|76819356|ref|YP_337703.1| beta-lactamase [Burkholderia pseudomallei 1710b]
gi|76583829|gb|ABA53303.1| beta-lactamase [Burkholderia pseudomallei 1710b]
Length = 309
Score = 40.7 bits (93), Expect = 0.27, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 25 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 83
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 84 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 143
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + + + + + L A + T
Sbjct: 144 AATLQYSDNTAANLLMALLGGPQAVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 203
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 204 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 263
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 264 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 295
>gi|296138289|ref|YP_003645532.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Tsukamurella paurometabola DSM
20162]
gi|296026423|gb|ADG77193.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Tsukamurella paurometabola DSM
20162]
Length = 456
Score = 40.7 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 14/45 (31%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ D +G V+ E P PAS TK+
Sbjct: 76 AQIAAALQNPDLGDFTGVIADAASGGVLWERDAARPRTPASTTKV 120
>gi|89890798|ref|ZP_01202307.1| beta-lactamase [Flavobacteria bacterium BBFL7]
gi|89516943|gb|EAS19601.1| beta-lactamase [Flavobacteria bacterium BBFL7]
Length = 508
Score = 40.7 bits (93), Expect = 0.28, Method: Composition-based stats.
Identities = 13/103 (12%), Positives = 30/103 (29%), Gaps = 24/103 (23%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-YYTLLD----------TNTGHVIAEN---- 45
M++ +++ + ++ + T+ D G ++ E
Sbjct: 1 MKKLFILLFLFAVTTSIAQDVDLKELDTYISKTVKDWGIPGVSVGIVKDGEIVFEKGYGV 60
Query: 46 ---------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ AS TK TA ++ ++E K
Sbjct: 61 MEVGKRKSPDEHTLYAIASNTKAFTAAIIAQLVEEGKLNWDDK 103
>gi|311068404|ref|YP_003973327.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
gi|310868921|gb|ADP32396.1| D-alanyl-D-alanine carboxypeptidase [Bacillus atrophaeus 1942]
Length = 494
Score = 40.7 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+TG ++ ++ D PAS KL TA
Sbjct: 65 ADTGDILYDHLGDTRLRPASNMKLFTAAAAL 95
>gi|237746307|ref|ZP_04576787.1| beta-lactamase [Oxalobacter formigenes HOxBLS]
gi|229377658|gb|EEO27749.1| beta-lactamase [Oxalobacter formigenes HOxBLS]
Length = 300
Score = 40.7 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 11/74 (14%)
Query: 17 FPFLSIAETNKLPY-YTL--------LDTNTG--HVIAENYPDHPWNPASLTKLMTAYVV 65
A + + + +G V A + D P+ S+ K A V
Sbjct: 1 MAQPPEAPALQAKVDAIVKQTQAEVGVAIESGGSAVKAAHNADKPFPMQSVVKFPVALAV 60
Query: 66 FSFLKEKKAMLTTP 79
+ + + L P
Sbjct: 61 LDSVDKGRLNLDDP 74
>gi|116496193|ref|YP_807927.1| Beta-lactamase class A [Lactobacillus casei ATCC 334]
gi|116106343|gb|ABJ71485.1| Beta-lactamase class A [Lactobacillus casei ATCC 334]
Length = 261
Score = 40.7 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 63/216 (29%), Gaps = 7/216 (3%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ L+ +T HV+ D P+ ASL KL A V + + L ++ S
Sbjct: 20 KHALLV-ADTRHVLFGAQVDQPFPAASLIKLGIAAFVKEKAADDPSQL--ERQVTLPESV 76
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
F + + L L++ S N A+ + + + L
Sbjct: 77 GGAGILRFMSPQAWRVRDLLTLMLTVSDNLATNALLTTYGL--PTIAAWLTRHYPGVQLR 134
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+ + A + + P Q + K +
Sbjct: 135 RPLMQSTFDGDNMITASAAWQLLRALLMSDGNEPAADICAQALRHQQNRTKLL-LAPTME 193
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F+G KTG + A + L AV+L
Sbjct: 194 NFVGWLAGKTGELPHCEHDAACFAA-EGERLYAVVL 228
>gi|223984874|ref|ZP_03634981.1| hypothetical protein HOLDEFILI_02280 [Holdemania filiformis DSM
12042]
gi|223963167|gb|EEF67572.1| hypothetical protein HOLDEFILI_02280 [Holdemania filiformis DSM
12042]
Length = 688
Score = 40.7 bits (93), Expect = 0.29, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 42/119 (35%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY---------------------------YTL 33
M+++ ++A+ ++++ + P Y L
Sbjct: 1 MKKWKCLLALLIMASGCTAQPQPTPSSEPAPDTAGLTQTADQLAEMLVSQLGAASVQYAL 60
Query: 34 LDTNTGHVI-------AENY------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+D +T ++ D + S++K+ TA V +E K L P
Sbjct: 61 MDGDT--ILVSGQRGVFAKGSDQALSADDQYAIGSVSKMFTAAAVMKLQEEGKLKLDQP 117
>gi|237509490|ref|ZP_04522205.1| class D beta-lactamase [Burkholderia pseudomallei MSHR346]
gi|235001695|gb|EEP51119.1| class D beta-lactamase [Burkholderia pseudomallei MSHR346]
Length = 473
Score = 40.7 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 205 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLLQ-DGDCGRRASPASTFK 260
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 261 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 318
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 319 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 354
>gi|254185849|ref|ZP_04892367.1| class D beta-lactamase [Burkholderia pseudomallei Pasteur 52237]
gi|157933535|gb|EDO89205.1| class D beta-lactamase [Burkholderia pseudomallei Pasteur 52237]
Length = 473
Score = 40.7 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 205 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLLQ-DGDCGRRASPASTFK 260
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 261 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 318
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 319 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 354
>gi|167724963|ref|ZP_02408199.1| class D beta-lactamase [Burkholderia pseudomallei DM98]
gi|167907847|ref|ZP_02495052.1| class D beta-lactamase [Burkholderia pseudomallei NCTC 13177]
gi|99644471|emb|CAK22307.1| class D beta-lactamase [Burkholderia pseudomallei]
Length = 269
Score = 40.7 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 1 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLLQ-DGDCGRRASPASTFK 56
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 57 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 114
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 115 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 150
>gi|167899531|ref|ZP_02486932.1| class D beta-lactamase [Burkholderia pseudomallei 7894]
gi|254264979|ref|ZP_04955844.1| class D beta-lactamase [Burkholderia pseudomallei 1710a]
gi|99644476|emb|CAK22308.1| class D beta-lactamase [Burkholderia pseudomallei]
gi|99644481|emb|CAK22309.1| class D beta-lactamase [Burkholderia pseudomallei]
gi|99644486|emb|CAK22310.1| class D beta-lactamase [Burkholderia pseudomallei]
gi|99644491|emb|CAK22311.1| class D beta-lactamase [Burkholderia pseudomallei]
gi|254215981|gb|EET05366.1| class D beta-lactamase [Burkholderia pseudomallei 1710a]
Length = 269
Score = 40.7 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 1 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLLQ-DGDCGRRASPASTFK 56
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 57 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 114
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 115 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 150
>gi|76819575|ref|YP_336264.1| class D beta-lactamase [Burkholderia pseudomallei 1710b]
gi|76584048|gb|ABA53522.1| class D beta-lactamase [Burkholderia pseudomallei 1710b]
Length = 473
Score = 40.7 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 46/156 (29%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 205 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLLQ-DGDCGRRASPASTFK 260
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ +++ + + + + +
Sbjct: 261 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYSVVWYSQQVAH 318
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 319 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 354
>gi|256846550|ref|ZP_05552007.1| beta-lactamase [Fusobacterium sp. 3_1_36A2]
gi|256718319|gb|EEU31875.1| beta-lactamase [Fusobacterium sp. 3_1_36A2]
Length = 263
Score = 40.7 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 36/213 (16%), Positives = 64/213 (30%), Gaps = 6/213 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-YPPS 92
D N +V D AS KL+ + + E K L+ I I+ +
Sbjct: 27 YDLNKNNV-FSINGDKKVLSASTIKLLILAELMKKISENKFSLSDTIMIADSMKTGGDGV 85
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATH 151
G TL L+I+ S N + + L + + ++ LG
Sbjct: 86 LKELNTGHHFTLKELATLMIIVSDNQATNILIDFLGMENINQLGKELDLKETFLGRK--M 143
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ +YT A D+++L + L+I ++
Sbjct: 144 MDAEARKKGYDNYTCADDISLLLK-LIYQEKLINKEASQLMLDILLRQQQGERLQRYLPS 202
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ N GD++ I V+L
Sbjct: 203 DIKIAHKCGDLDNLENDGGIIWLGDRAYILVVL 235
>gi|324326508|gb|ADY21768.1| beta-lactamase [Bacillus thuringiensis serovar finitimus YBT-020]
Length = 312
Score = 40.7 bits (93), Expect = 0.30, Method: Composition-based stats.
Identities = 35/225 (15%), Positives = 60/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
++T T IA P+ + AS K + A V+ + L IT +K
Sbjct: 75 INTGTKQTIAYR-PNERFAFASTYKALAAGVLLQ--QNSTMKLDEVITYTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + MTL + + S N + K +K ++ M + T
Sbjct: 132 TEKHVDTGMTLGEIAEAAVRYSDNTAGNILFNKIGGPKGYEKALRQMGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIATNLKAFTAGNALPNHKRNILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
K+G N +A ++ +I IL + D
Sbjct: 252 WIVADKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|255964404|gb|ACU44520.1| beta-lactamase CTX-M-15 [Escherichia coli]
Length = 229
Score = 40.7 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 17/141 (12%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAES 126
+ S N +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAH 144
>gi|124022606|ref|YP_001016913.1| beta-lactamase [Prochlorococcus marinus str. MIT 9303]
gi|123962892|gb|ABM77648.1| putative beta-lactamase [Prochlorococcus marinus str. MIT 9303]
Length = 386
Score = 40.7 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 48/154 (31%), Gaps = 9/154 (5%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ LSN + L+ + + LL + G AE P+ AS K V +
Sbjct: 99 LTTLSNRWKDLAKQQKDLQASAFLLVLDDGR-YAELSPETALPAASSIKTAILLVALELI 157
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKK-GSTMTLDNALKLLIVKSANDIAVAIAESLC 128
+ P+ ++K K GS +I S N + + +
Sbjct: 158 DSGQLSWNEPLKLTKEIIGGGAGWMASKPLGSQFPAHEVATEMIRVSDNTATNLLIQRI- 216
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+N LGLS+ + + +
Sbjct: 217 ----GGKDVLNARFNALGLSS--TVVNNWLPDLQ 244
>gi|90412474|ref|ZP_01220477.1| hypothetical
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Photobacterium profundum 3TCK]
gi|90326511|gb|EAS42917.1| hypothetical
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Photobacterium profundum 3TCK]
Length = 467
Score = 40.7 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
N ++ ++D T V+ + PAS K++TA
Sbjct: 20 AFNPQAAINKLPNGHDLALMIVDPATNQVLFSQREEQLQAPASTQKVITALAA 72
>gi|89889590|ref|ZP_01201101.1| hypothetical protein BBFL7_01407 [Flavobacteria bacterium BBFL7]
gi|89517863|gb|EAS20519.1| hypothetical protein BBFL7_01407 [Flavobacteria bacterium BBFL7]
Length = 314
Score = 40.7 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 26/220 (11%), Positives = 57/220 (25%), Gaps = 18/220 (8%)
Query: 30 YYTLLDT-NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+L+D + G A D+ AS+ K+ Y +++ T + +
Sbjct: 66 SVSLVDLSDNGVRYASINGDNMMYAASMPKIAVLYTAMDAIEKGDLEYTDE--VKTDMWL 123
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
++ + + I D A + + +
Sbjct: 124 MISKSNNAASTRMIDRVGFQR--IEDVMCDPANPFYDQYSNGGLWVGKRYAAQGRR---- 177
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT--NWA 206
H G+ H T +A L +++ T +K + N
Sbjct: 178 --HPEPIKGL---SHAATTEAVAKLYYQLATGQLINSDRSSEMLHYLKDPSLHHKFVNTL 232
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAIQGDQ--SLIAVIL 244
AD + + + ++ I V +
Sbjct: 233 DQIAPEADIYRKSGSWKNWHCDSVIVWDDERKKHYILVAM 272
>gi|30248084|ref|NP_840154.1| D-alanyl-D-alanine carboxypeptidase [Nitrosomonas europaea ATCC
19718]
gi|30179969|emb|CAD83964.1| D-Ala-D-Ala carboxypeptidase 3 (S13) family [Nitrosomonas
europaea ATCC 19718]
Length = 475
Score = 40.7 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 13/81 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-------------LLDTNTGHVIAENYP 47
M+ FL + + IFP ++ + + + + +
Sbjct: 1 MKSFLKVAWLLWGVLIFPAYAVDLPDTVRQALKKAGIPESAVGVYVREVGADRPLVSVNA 60
Query: 48 DHPWNPASLTKLMTAYVVFSF 68
D P NPAS+ K++T Y
Sbjct: 61 DVPMNPASVMKIVTTYAGLEM 81
>gi|125634304|gb|ABN48406.1| beta-lactamase [Escherichia coli]
Length = 197
Score = 40.7 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 17/141 (12%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAES 126
+ S N +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAH 144
>gi|14578579|gb|AAK52327.1| class A beta-lactamase precursor [Burkholderia pseudomallei]
Length = 295
Score = 40.7 bits (93), Expect = 0.31, Method: Composition-based stats.
Identities = 42/264 (15%), Positives = 78/264 (29%), Gaps = 18/264 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 11 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 69
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 70 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 129
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + +T + + + + + L A + T
Sbjct: 130 AATLQYSDNTAANLLIALLGGPQTVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 189
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 190 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 249
Query: 227 NIVASAIQGDQSLIAVILGALDRN 250
N + A +++ I I+ RN
Sbjct: 250 NDIGVAYPPNRAPIVFIVYTTTRN 273
>gi|227825073|ref|ZP_03989905.1| beta-lactamase [Acidaminococcus sp. D21]
gi|226905572|gb|EEH91490.1| beta-lactamase [Acidaminococcus sp. D21]
Length = 284
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 38/264 (14%), Positives = 74/264 (28%), Gaps = 30/264 (11%)
Query: 1 MRQFLVIIAMAMLSN------IFPFLSIAETNKLPY----------YTLLDTNTGHVIAE 44
M++ ++ A+L+ + +++ D TG
Sbjct: 5 MKKGAALMGAALLTVTLWSTPVMAAVNVPANLAAVSKTVKGAAPYGVYFSDLKTGKGYY- 63
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMT 103
AS+ K+ + +++ K LT T++ KG+T+T
Sbjct: 64 RNS-VQTPAASMIKVFILAAAYEDIRDGKLSLTETFTLTDKNVVAGSGVLQGMPKGTTVT 122
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ--- 160
+ AL +I+ S N + + L + +N K G T
Sbjct: 123 VKKALDEMIIHSDNTATNLMIDRL------GMDRVNRYLKEHGYKDTTLRRKMMDFDAAK 176
Query: 161 --HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
+ TT RD+ +L R+ K + + KT
Sbjct: 177 KGAENMTTVRDVGLLFKRLYQGKCVSKDLDAQMLAIYKAQVDTDMLPDKLPKGTVVAHKT 236
Query: 219 GFTCASGFNIVASAIQGDQSLIAV 242
G + ++ V
Sbjct: 237 GEVRDLRHDGGIVYTAKGDYVLVV 260
>gi|219920893|emb|CAQ76624.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 41/258 (15%), Positives = 72/258 (27%), Gaps = 18/258 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPD 48
+ L+ A+ +L + A+T + L++ + + D
Sbjct: 8 KSALMAAAVPLLLASGSLWASADTLQKKLADLEKRSGGRLGVALINTADDSQTLY--RGD 65
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M A V + ++ + I K+ + S MTL
Sbjct: 66 ERFAMCSTGKVMAAAAVLKQSESHPDVVNKRLEIKKSDLVVWSPITEKHLQSGMTLAELS 125
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F Q + + + L +A + T
Sbjct: 126 AAALQYSDNTAMNKIIGYLGGPEKVTAFAQSIGDVTFRLDRMEPALNSAIPGDKRDTTTP 185
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L + Q+ + A A G KTG
Sbjct: 186 LAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWAVGDKTGGGDYGTT 245
Query: 227 NIVASAIQGDQ-SLIAVI 243
N +A + L+ V
Sbjct: 246 NDIAVIWPENHAPLVLVT 263
>gi|599572|dbj|BAA06252.1| beta-lactamase precursor [Proteus vulgaris]
Length = 300
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 3/200 (1%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ + AS +K+M V +++ +L ITI K+ + + MTL
Sbjct: 67 GEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKHLTTGMTLAE 126
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ S N I + L K +F + +N+ + L A
Sbjct: 127 LSAATLQYSDNTAMNKILDYLGGPAKVTQFARSINDVTYRLDRKEPELNTAIHGDPRDTT 186
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
+ L D Q+ N+ A G KTG
Sbjct: 187 SPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTTGDNSIKAGLPKHWVVGDKTGSGDYG 246
Query: 225 GFNIVASAIQGDQ-SLIAVI 243
N +A + LI V+
Sbjct: 247 TTNDIAVIWPENHAPLILVV 266
>gi|315940023|gb|ADU56222.1| extended-spectrum beta-lactamase [Escherichia coli]
gi|315940025|gb|ADU56223.1| SHV-7 extended-spectrum beta-lactamase [Escherichia coli]
Length = 197
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 2/136 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 36 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 95
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 96 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 155
Query: 152 FMNAHGVVQHGHYTTA 167
A T A
Sbjct: 156 LNEALPGDARDTTTPA 171
>gi|293364671|ref|ZP_06611392.1| penicillin-binding protein 1B [Streptococcus oralis ATCC 35037]
gi|307702927|ref|ZP_07639875.1| penicillin-binding protein [Streptococcus oralis ATCC 35037]
gi|291316929|gb|EFE57361.1| penicillin-binding protein 1B [Streptococcus oralis ATCC 35037]
gi|307623607|gb|EFO02596.1| penicillin-binding protein [Streptococcus oralis ATCC 35037]
Length = 833
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 32 TLLDTNTGHVI-------AENY-----PDHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + A + +
Sbjct: 434 VLMDNQTGAILGFVGGRNYQKNQNNHAIDTKRSPASTTKPILAYSIAIDQGLMGSASILS 493
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ + ++ G + + + K +++ M
Sbjct: 494 NYPTNFSNGNPIMYVNSPGTGMMTLGEALNYSWNIPAYW--TYRTLREKGVDVKGYMEKM 551
Query: 139 NNTSKNLGLSATHF 152
G+ +
Sbjct: 552 GYEIPEYGIESLPM 565
>gi|273161406|gb|ACZ97628.1| SHV-1 beta-lactamase [Klebsiella pneumoniae]
Length = 196
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 2/136 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 26 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 85
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 86 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 145
Query: 152 FMNAHGVVQHGHYTTA 167
A T A
Sbjct: 146 LNEALPGDARDTTTPA 161
>gi|273161403|gb|ACZ97627.1| SHV-1 beta-lactamase [Klebsiella pneumoniae]
Length = 163
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 2/136 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 26 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 85
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 86 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 145
Query: 152 FMNAHGVVQHGHYTTA 167
A T A
Sbjct: 146 LNEALPGDARDTTTPA 161
>gi|273161400|gb|ACZ97626.1| SHV-1 beta-lactamase [Klebsiella pneumoniae]
Length = 211
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 36/136 (26%), Gaps = 2/136 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + D + S K++ V + + L I +
Sbjct: 25 MDLASGRTLTAWRADERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 84
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N A + F++ + + L T
Sbjct: 85 SEKHLADGMTVGELCAAAITMSDNSAANLLLATVGGPAGLTAFLRQIGDNVTRLDRWETE 144
Query: 152 FMNAHGVVQHGHYTTA 167
A T A
Sbjct: 145 LNEALPGDARDTTTPA 160
>gi|258573097|ref|XP_002540730.1| beta-lactamase [Uncinocarpus reesii 1704]
gi|237900996|gb|EEP75397.1| beta-lactamase [Uncinocarpus reesii 1704]
Length = 401
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
D ASLTKLMT+ ++ L
Sbjct: 52 EDDIMAVASLTKLMTSIAALQCVERGLIKLDD 83
>gi|33240595|ref|NP_875537.1| Beta-lactamase class A [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33238123|gb|AAQ00190.1| Beta-lactamase class A [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 345
Score = 40.7 bits (93), Expect = 0.32, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 3/115 (2%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
K Y LL+ G AE + AS K+ + + + +T++K
Sbjct: 90 ALKASGYVLLE--DGR-YAELNSNQIAPAASTIKIPILLICLKMVGSGELKWNEKVTLTK 146
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ ++ + + +++ +++ A + Q N
Sbjct: 147 DDVAEGSGWIRYQPLGKEFFIHEIATEMIRVSDNTATNLLIRKIGGINTINQRFN 201
>gi|225857672|ref|YP_002739183.1| penicillin-binding protein 1B [Streptococcus pneumoniae P1031]
gi|225725409|gb|ACO21261.1| penicillin-binding protein 1B [Streptococcus pneumoniae P1031]
Length = 821
Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + ++ K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYSLLRENGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|84385766|ref|ZP_00988796.1| beta-lactamase [Vibrio splendidus 12B01]
gi|84379082|gb|EAP95935.1| beta-lactamase [Vibrio splendidus 12B01]
Length = 319
Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 30/258 (11%), Positives = 74/258 (28%), Gaps = 16/258 (6%)
Query: 1 MRQF----LVIIAMAMLSNIFPFLSIAETN-------KLP-YYTLLDTNTGHVIAENYPD 48
M+++ LV+++ ++ E+ + D+ T D
Sbjct: 33 MKKYTSLALVLLSAFFSTSSLSHSLDPESIEQIEFRVSARIGVAVYDSATEQT-WSYKGD 91
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K + + + + L + + + + + G ++L A
Sbjct: 92 ERFPMMSTFKTLACANLLYDHENEGLYLESKVGVKSDELIAWSPMTKAFVGKEISLTGAC 151
Query: 109 KLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + +F++ + + L +A + T
Sbjct: 152 AATMEMSDNTAANIVLAGIDGPNGLTEFLRSIGDRETRLDHIEPDLNHARPGDERDTTTP 211
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
+ L+ + + Q+K + K ++ ++G
Sbjct: 212 NTMVKTLNELVYGNVLSEESKAQLKTWMMDNKVSDGMIRSILPDGWNIADRSGAGAYGSR 271
Query: 227 NIVASAIQGDQ-SLIAVI 243
I A + LI I
Sbjct: 272 AITAIVWSETRAPLIISI 289
>gi|295133225|ref|YP_003583901.1| Beta-lactamase class C family protein [Zunongwangia profunda
SM-A87]
gi|294981240|gb|ADF51705.1| Beta-lactamase class C family protein [Zunongwangia profunda
SM-A87]
Length = 364
Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 24/103 (23%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT--LLDTN-TGHVIAENY----------- 46
++ F ++I + + + + T+++ Y L D+ +G ++ +
Sbjct: 3 IKAFFLLIPVVLFLASTKTYAQSITSQIENYLDNLKDSEFSGTILVAHNDTIIAKRAYGL 62
Query: 47 ----------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ +N AS+TK+ TA V +++K L P
Sbjct: 63 ASIEYDVKNQIETKFNIASITKMFTAVAVLQLFEQRKIALNKP 105
>gi|21262148|emb|CAD32565.1| beta-lactamase [Burkholderia pseudomallei]
Length = 269
Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 18/156 (11%), Positives = 45/156 (28%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG ++ + D +PAS K
Sbjct: 1 MKFRHALSSAFVLLGCIAASAHAKTICTAIA---DAGTGKLLVQ-DGDCGRRASPASTFK 56
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA--LKLLIVKSA 116
+ + + + + P+ +++ + + + +
Sbjct: 57 IAISLMGYDAGFLR--NEHDPVLPYRDSYIAWGGEAWKQPTDPTRWLKYPVVWYSQQVAH 114
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A A+ + +N GL
Sbjct: 115 HLGAQRFAQYAKAFGYGNADVSGDPGQNNGLDRAWI 150
>gi|302379859|ref|ZP_07268342.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
ACS-171-V-Col3]
gi|302312337|gb|EFK94335.1| serine-type D-Ala-D-Ala carboxypeptidase [Finegoldia magna
ACS-171-V-Col3]
Length = 312
Score = 40.7 bits (93), Expect = 0.33, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 82/251 (32%), Gaps = 18/251 (7%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL------MTAYVVFSFLKEKKAMLTTPI 80
+++ D + + ASL+KL +T + ++ + +L
Sbjct: 58 DALAFSVYDIDKEKYLFYEGGGQLPTVASLSKLFAIDYALTKVKLEDSIEVNQGLLDLVP 117
Query: 81 TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL--CKTEKKFVQHM 138
S A P + + M + + + N + + K FV+++
Sbjct: 118 QGSSMAHLKPGKYTAEQIMQAMLVPSGNDAAFALAYNIGKKDLGDGYSAKKYVNHFVKNL 177
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYM---HYFQIKGLEI 195
+ + G + TH + G T +D+ ++ ++ +
Sbjct: 178 SKYLADEGYNKTHLFDPSGF-STQADTNLKDINRVALKLIDYDFVKKCMGKSYFTIQTPQ 236
Query: 196 KGKKYPNTN-----WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
+ NTN + G+KTG T AS +NIV + + + L +
Sbjct: 237 GEMNWKNTNEFLDPKSAFYNKDVKGIKTG-TMASSYNIVVLYEKNGKKYLITCLASHTNE 295
Query: 251 TRNKVSASLLS 261
R K + ++
Sbjct: 296 DRYKAVQAAIN 306
>gi|271970369|ref|YP_003344565.1| beta-lactamase [Streptosporangium roseum DSM 43021]
gi|270513544|gb|ACZ91822.1| beta-lactamase [Streptosporangium roseum DSM 43021]
Length = 635
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA 74
+S Y + D +TG + + PAS+ KL+TA V +++ +
Sbjct: 61 AAIAVVSGGRQVFAQGYGVADVDTGRPVDA--EQTVFAPASVAKLITATAVMQLVEKGRI 118
Query: 75 MLT 77
L
Sbjct: 119 DLD 121
>gi|229020249|ref|ZP_04177019.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
gi|228741042|gb|EEL91270.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
Length = 85
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
A G K+G + + +V + + +I V+L + R + + F
Sbjct: 26 YDDPYAIGSKSGLSALGKYTVVTVDEKDGKRVINVVL-SSTRTQLYPDTKKMAHYAFKQ 83
>gi|219920971|emb|CAQ76663.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 70/258 (27%), Gaps = 18/258 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPD 48
+ L+ A+ +L + A+ + L++ + + D
Sbjct: 8 KTALMAAAVPLLLASGSLWASADAIQQKLADLEKHSGGRLGVALINTADDSQTLY--RGD 65
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M A V + ++ + I K + S MTL
Sbjct: 66 ERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKADLVVWSPITEKHLQSGMTLAELS 125
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N I L EK F Q + + + L +A + T
Sbjct: 126 AAALQYSDNTAMNKIIGYLGGPEKVTAFAQSIGDVTFRLDRMEPALNSAIPGDKRDTTTP 185
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L + Q+ + A A G KTG
Sbjct: 186 LAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWAVGDKTGAGDYGTT 245
Query: 227 NIVASAIQGDQ-SLIAVI 243
N +A + L+ V
Sbjct: 246 NDIAVIWPENHAPLVLVT 263
>gi|48477087|ref|YP_022793.1| D-Ala-D-Ala carboxypeptidase 3 [Picrophilus torridus DSM 9790]
gi|48429735|gb|AAT42600.1| D-Ala-D-Ala carboxypeptidase 3 [Picrophilus torridus DSM 9790]
Length = 323
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+G V+ D P PAS K++TA + ++K
Sbjct: 11 KSGRVLRSFNMDLPLMPASNMKIVTAILAMRYIK 44
>gi|89075780|ref|ZP_01162168.1| beta-lactamase [Photobacterium sp. SKA34]
gi|89048512|gb|EAR54087.1| beta-lactamase [Photobacterium sp. SKA34]
Length = 287
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 32/254 (12%), Positives = 70/254 (27%), Gaps = 15/254 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP----------YYTLLDTNTGHVIAENYPDHP 50
M++F + +++ S L+ L + D+ T +
Sbjct: 1 MKKFFLFTLISLCSC--SVLASELNITLRQMEKQIDGNIGVAVFDSQTNTS-WNFNGNKR 57
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S K + V +++ K LT I ++K + G M+L++
Sbjct: 58 FPMMSAFKTLACANVLYDVQQHKLSLTNKIKVTKAGLINWNPVTQNFVGGQMSLNSVCGA 117
Query: 111 LIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
++ S N A KF++ + + + L ++ T
Sbjct: 118 AMLMSDNYAANLALGQVGGPHGVTKFLRMIGDKTTRLDHFEPKLNYVEKGAENDTTTPIA 177
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
M + + Q+K AV ++G +
Sbjct: 178 MMNTIKKLLTGKVLDSESKVQLKFWMTNNMVSDGLARAVLPTGWKIADRSGGGVNGSRTL 237
Query: 229 VASAIQGDQSLIAV 242
A + +
Sbjct: 238 TAMVWNKHHQPLFI 251
>gi|262195431|ref|YP_003266640.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Haliangium ochraceum DSM 14365]
gi|262078778|gb|ACY14747.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Haliangium ochraceum DSM 14365]
Length = 514
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 9 AMAMLSNIFPFLS-IAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
A+++ + I L+ A + D TG V+ + +N AS+TK++T
Sbjct: 43 ALSLGARIDALLAGHAPLTDARVGIFVQDLGTGAVLYAREAGNSFNVASVTKVITM 98
>gi|219920921|emb|CAQ76638.1| beta-lactamase [Klebsiella oxytoca]
Length = 274
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 40/258 (15%), Positives = 72/258 (27%), Gaps = 18/258 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPD 48
R L+ A+ +L + A+ + L++ + + D
Sbjct: 8 RSALMAAAVPLLLASGSLWASADAIQQKLADLEKRSGGRLGVALINTADDSQTLY--RGD 65
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M A V + ++ + I K+ + S MTL
Sbjct: 66 ERFAMCSTGKVMAAAAVLKQSESHPDVVNKRLEIKKSDLVVWSPITEKHLQSGMTLAELS 125
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N + L EK F Q + + + L + +A + T
Sbjct: 126 AAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALNSAIPGDKRDTTTP 185
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L + Q+ + A A G KTG
Sbjct: 186 LAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWAVGDKTGAGDYGTT 245
Query: 227 NIVASAIQGDQ-SLIAVI 243
N +A + L+ V
Sbjct: 246 NDIAVIWPENHAPLVLVT 263
>gi|260914824|gb|ACX54273.1| beta-lactamase blaCTX-M-5 [Enterobacter cloacae]
Length = 241
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 29/186 (15%), Positives = 50/186 (26%), Gaps = 4/186 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + L +K F + + + + L +
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHLGGPDKVTAFARSLGDETFRLDRTEPTLN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 174 TAIPGDPRDTTTPLAMAQTLKNLTLGKALAETQRAQLVTWLKGNTTGSASIRAGLPKSWG 233
Query: 214 DGMKTG 219
G KTG
Sbjct: 234 VGDKTG 239
>gi|256833321|ref|YP_003162048.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-
alanine-endopeptidase [Jonesia denitrificans DSM 20603]
gi|256686852|gb|ACV09745.1| D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-
alanine-endopeptidase [Jonesia denitrificans DSM 20603]
Length = 476
Score = 40.7 bits (93), Expect = 0.34, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 13 LSNIFPFLSIAETNKLPYYTLL--DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++ + L+ + P ++ DT TG I D P AS+ K++T
Sbjct: 78 IATLAAKLAKNKDTLGPSVAVVVSDTFTGDPITAVNADTPIVAASVQKILTGLAAMD 134
>gi|291044566|ref|ZP_06570275.1| penicillin-binding protein 3 [Neisseria gonorrhoeae DGI2]
gi|291011460|gb|EFE03456.1| penicillin-binding protein 3 [Neisseria gonorrhoeae DGI2]
Length = 501
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ P NPAS KL+TA+ F
Sbjct: 65 AVYVQELDSGKVIIDHRAGIPVNPASTMKLVTAFAAFK 102
>gi|268596147|ref|ZP_06130314.1| penicillin binding protein 3 [Neisseria gonorrhoeae FA19]
gi|268549935|gb|EEZ44954.1| penicillin binding protein 3 [Neisseria gonorrhoeae FA19]
Length = 482
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ P NPAS KL+TA+ F
Sbjct: 46 AVYVQELDSGKVIIDHRAGIPVNPASTMKLVTAFAAFK 83
>gi|268594095|ref|ZP_06128262.1| penicillin binding protein 3 [Neisseria gonorrhoeae 35/02]
gi|268547484|gb|EEZ42902.1| penicillin binding protein 3 [Neisseria gonorrhoeae 35/02]
Length = 482
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ P NPAS KL+TA+ F
Sbjct: 46 AVYVQELDSGKVIIDHRAGIPVNPASTMKLVTAFAAFK 83
>gi|240013423|ref|ZP_04720336.1| putative carboxypeptidase, penicillin binding protein [Neisseria
gonorrhoeae DGI18]
gi|240015864|ref|ZP_04722404.1| putative carboxypeptidase, penicillin binding protein [Neisseria
gonorrhoeae FA6140]
gi|240080005|ref|ZP_04724548.1| putative carboxypeptidase, penicillin binding protein [Neisseria
gonorrhoeae FA19]
gi|240112212|ref|ZP_04726702.1| putative carboxypeptidase, penicillin binding protein [Neisseria
gonorrhoeae MS11]
gi|240114956|ref|ZP_04729018.1| putative carboxypeptidase, penicillin binding protein [Neisseria
gonorrhoeae PID18]
gi|240117242|ref|ZP_04731304.1| putative carboxypeptidase, penicillin binding protein [Neisseria
gonorrhoeae PID1]
gi|240120494|ref|ZP_04733456.1| putative carboxypeptidase, penicillin binding protein [Neisseria
gonorrhoeae PID24-1]
gi|240122794|ref|ZP_04735750.1| putative carboxypeptidase, penicillin binding protein [Neisseria
gonorrhoeae PID332]
gi|240127502|ref|ZP_04740163.1| putative carboxypeptidase, penicillin binding protein [Neisseria
gonorrhoeae SK-93-1035]
gi|260441228|ref|ZP_05795044.1| putative carboxypeptidase, penicillin binding protein [Neisseria
gonorrhoeae DGI2]
gi|268598272|ref|ZP_06132439.1| peptidase [Neisseria gonorrhoeae MS11]
gi|268600624|ref|ZP_06134791.1| peptidase [Neisseria gonorrhoeae PID18]
gi|268602934|ref|ZP_06137101.1| peptidase [Neisseria gonorrhoeae PID1]
gi|268681407|ref|ZP_06148269.1| peptidase [Neisseria gonorrhoeae PID332]
gi|268685876|ref|ZP_06152738.1| peptidase [Neisseria gonorrhoeae SK-93-1035]
gi|268582403|gb|EEZ47079.1| peptidase [Neisseria gonorrhoeae MS11]
gi|268584755|gb|EEZ49431.1| peptidase [Neisseria gonorrhoeae PID18]
gi|268587065|gb|EEZ51741.1| peptidase [Neisseria gonorrhoeae PID1]
gi|268621691|gb|EEZ54091.1| peptidase [Neisseria gonorrhoeae PID332]
gi|268626160|gb|EEZ58560.1| peptidase [Neisseria gonorrhoeae SK-93-1035]
Length = 469
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRAGIPVNPASTMKLVTAFAAFK 70
>gi|239998239|ref|ZP_04718163.1| Penicillin-binding protein 3 [Neisseria gonorrhoeae 35/02]
gi|240124988|ref|ZP_04737874.1| Penicillin-binding protein 3 [Neisseria gonorrhoeae SK-92-679]
Length = 508
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ P NPAS KL+TA+ F
Sbjct: 72 AVYVQELDSGKVIIDHRAGIPVNPASTMKLVTAFAAFK 109
>gi|254493018|ref|ZP_05106189.1| peptidase [Neisseria gonorrhoeae 1291]
gi|226512058|gb|EEH61403.1| peptidase [Neisseria gonorrhoeae 1291]
Length = 469
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRAGIPVNPASTMKLVTAFAAFK 70
>gi|194097735|ref|YP_002000776.1| Penicillin-binding protein 3 [Neisseria gonorrhoeae NCCP11945]
gi|293397692|ref|ZP_06641898.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
(penicillin binding protein 4) [Neisseria gonorrhoeae
F62]
gi|193933025|gb|ACF28849.1| Penicillin-binding protein 3 [Neisseria gonorrhoeae NCCP11945]
gi|291611638|gb|EFF40707.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
(penicillin binding protein 4) [Neisseria gonorrhoeae
F62]
Length = 508
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ P NPAS KL+TA+ F
Sbjct: 72 AVYVQELDSGKVIIDHRAGIPVNPASTMKLVTAFAAFK 109
>gi|167897913|ref|ZP_02485315.1| class A beta-lactamase [Burkholderia pseudomallei 7894]
Length = 314
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 39/272 (14%), Positives = 80/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 30 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 88
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 89 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 148
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + +T + + + + + L A + T
Sbjct: 149 AATLQYSDNTAANLLIALLGGPQTVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 208
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 209 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 268
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 269 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 300
>gi|167922472|ref|ZP_02509563.1| class A beta-lactamase [Burkholderia pseudomallei BCC215]
gi|254356954|ref|ZP_04973229.1| class A beta-lactamase [Burkholderia mallei 2002721280]
gi|148025981|gb|EDK84104.1| class A beta-lactamase [Burkholderia mallei 2002721280]
Length = 309
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 39/272 (14%), Positives = 80/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 25 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 83
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 84 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 143
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + +T + + + + + L A + T
Sbjct: 144 AATLQYSDNTAANLLIALLGGPQTVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 203
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 204 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 263
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 264 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 295
>gi|121597865|ref|YP_989868.1| class A beta-lactamase [Burkholderia mallei SAVP1]
gi|124382274|ref|YP_001024343.1| class A beta-lactamase [Burkholderia mallei NCTC 10229]
gi|126446647|ref|YP_001078232.1| class A beta-lactamase [Burkholderia mallei NCTC 10247]
gi|167003542|ref|ZP_02269328.1| class A beta-lactamase [Burkholderia mallei PRL-20]
gi|167819468|ref|ZP_02451148.1| class A beta-lactamase [Burkholderia pseudomallei 91]
gi|167827839|ref|ZP_02459310.1| class A beta-lactamase [Burkholderia pseudomallei 9]
gi|226197718|ref|ZP_03793293.1| class A beta-lactamase [Burkholderia pseudomallei Pakistan 9]
gi|238563350|ref|ZP_00438999.2| beta-lactamase [Burkholderia mallei GB8 horse 4]
gi|254174390|ref|ZP_04881052.1| class A beta-lactamase [Burkholderia mallei ATCC 10399]
gi|254190047|ref|ZP_04896556.1| class A beta-lactamase [Burkholderia pseudomallei Pasteur 52237]
gi|121225663|gb|ABM49194.1| class A beta-lactamase [Burkholderia mallei SAVP1]
gi|124290294|gb|ABM99563.1| class A beta-lactamase [Burkholderia mallei NCTC 10229]
gi|126239501|gb|ABO02613.1| class A beta-lactamase [Burkholderia mallei NCTC 10247]
gi|157937724|gb|EDO93394.1| class A beta-lactamase [Burkholderia pseudomallei Pasteur 52237]
gi|160695436|gb|EDP85406.1| class A beta-lactamase [Burkholderia mallei ATCC 10399]
gi|225930327|gb|EEH26339.1| class A beta-lactamase [Burkholderia pseudomallei Pakistan 9]
gi|238520861|gb|EEP84317.1| beta-lactamase [Burkholderia mallei GB8 horse 4]
gi|243060943|gb|EES43129.1| class A beta-lactamase [Burkholderia mallei PRL-20]
Length = 314
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 39/272 (14%), Positives = 80/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 30 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 88
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 89 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 148
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + +T + + + + + L A + T
Sbjct: 149 AATLQYSDNTAANLLIALLGGPQTVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 208
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 209 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 268
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 269 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 300
>gi|3249049|gb|AAC24040.1| penicillin binding protein 3 [Neisseria gonorrhoeae]
Length = 469
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRAGIPVNPASTMKLVTAFAAFK 70
>gi|59800568|ref|YP_207280.1| putative carboxypeptidase, penicillin binding protein [Neisseria
gonorrhoeae FA 1090]
gi|268683574|ref|ZP_06150436.1| peptidase [Neisseria gonorrhoeae SK-92-679]
gi|59717463|gb|AAW88868.1| putative carboxypeptidase, penicillin binding protein [Neisseria
gonorrhoeae FA 1090]
gi|268623858|gb|EEZ56258.1| peptidase [Neisseria gonorrhoeae SK-92-679]
gi|317163525|gb|ADV07066.1| Penicillin-binding protein 3 [Neisseria gonorrhoeae TCDC-NG08107]
Length = 469
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++G VI ++ P NPAS KL+TA+ F
Sbjct: 33 AVYVQELDSGKVIIDHRAGIPVNPASTMKLVTAFAAFK 70
>gi|53716878|ref|YP_105905.1| class A beta-lactamase [Burkholderia mallei ATCC 23344]
gi|53721970|ref|YP_110955.1| beta-lactamase precursor [Burkholderia pseudomallei K96243]
gi|17066642|gb|AAL35336.1|AF441239_1 beta-lactamase precursor 1d [Burkholderia pseudomallei]
gi|14578569|gb|AAK52322.1| class A beta-lactamase precursor [Burkholderia mallei]
gi|14578571|gb|AAK52323.1| class A beta-lactamase precursor [Burkholderia pseudomallei]
gi|14578575|gb|AAK52325.1| class A beta-lactamase precursor [Burkholderia pseudomallei]
gi|14578577|gb|AAK52326.1| class A beta-lactamase precursor [Burkholderia pseudomallei]
gi|52212384|emb|CAH38409.1| beta-lactamase precursor [Burkholderia pseudomallei K96243]
gi|52422848|gb|AAU46418.1| class A beta-lactamase [Burkholderia mallei ATCC 23344]
gi|223469162|gb|ACM89980.1| class A beta-lactamase [Burkholderia pseudomallei]
Length = 295
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 39/272 (14%), Positives = 80/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 11 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 69
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 70 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 129
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + +T + + + + + L A + T
Sbjct: 130 AATLQYSDNTAANLLIALLGGPQTVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 189
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 190 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 249
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 250 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 281
>gi|326384093|ref|ZP_08205776.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Gordonia neofelifaecis NRRL
B-59395]
gi|326197253|gb|EGD54444.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Gordonia neofelifaecis NRRL
B-59395]
Length = 448
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ D TG V+ P PAS K++TA V L
Sbjct: 84 VSDPLTGQVLWSQGAAEPRVPASNAKILTASAVLLALPH 122
>gi|213965145|ref|ZP_03393343.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Corynebacterium amycolatum SK46]
gi|213952259|gb|EEB63643.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Corynebacterium amycolatum SK46]
Length = 498
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+S I + + + D TG + PAS K++TA
Sbjct: 97 VSAIMDAAAADPAFGELHGIVSDATTGQKLWGINDTAVAMPASSMKILTASAAL------ 150
Query: 73 KAMLTTPITISKNASEYPPSN 93
L +S S +N
Sbjct: 151 -LDLGEDHRVSTRVSRVTGTN 170
>gi|84494846|ref|ZP_00993965.1| beta-lactamase related protein [Janibacter sp. HTCC2649]
gi|84384339|gb|EAQ00219.1| beta-lactamase related protein [Janibacter sp. HTCC2649]
Length = 278
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++D +G V+A + PD + AS+ K+ + L++ +
Sbjct: 27 IVDLGSGEVLASHDPDRLLSTASVGKVFALIELAERLRDGRLAADQ 72
>gi|313675426|ref|YP_004053422.1| d-alanyl-d-alanine carboxypeptidase [Marivirga tractuosa DSM 4126]
gi|312942124|gb|ADR21314.1| putative D-alanyl-D-alanine carboxypeptidase [Marivirga tractuosa
DSM 4126]
Length = 362
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 26/168 (15%), Positives = 50/168 (29%), Gaps = 18/168 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTG-------------HVIAENYP 47
+++ L+I + +L F K ++D G V+AE+
Sbjct: 2 LKKTLIIGSAIILILSAGFGVAFFMVKPDKERIVDFIRGNPDRISISLSQNEKVLAEHNE 61
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
AS K++ A E K +++S + P+ + +
Sbjct: 62 IKMLPLASTVKIIIAIEYAYQAAEGKLNPDQKLSVSDLKKYHYPATDGGAHRAWLNNLEL 121
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHM-----NNTSKNLGLSAT 150
K V I S + + + N+ K LG+
Sbjct: 122 EKDSSVSLWEIAKGMINYSSNANTEYLIDLLGLENINSRIKLLGIEKH 169
>gi|254927435|gb|ACT85950.1| beta-lactamase CTX-M-15 [Escherichia coli]
Length = 223
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 17/141 (12%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAES 126
+ S N +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAH 144
>gi|300775566|ref|ZP_07085427.1| possible penicillin-binding protein [Chryseobacterium gleum ATCC
35910]
gi|300505593|gb|EFK36730.1| possible penicillin-binding protein [Chryseobacterium gleum ATCC
35910]
Length = 506
Score = 40.7 bits (93), Expect = 0.35, Method: Composition-based stats.
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 23/111 (20%)
Query: 2 RQFLVIIAMAMLSNIFP---------FLSIAETNKLPYYTLLDTNTGHVIAENY------ 46
+ F +++ + + F + AE L+ ++ +
Sbjct: 19 KVFFILMCLIGPLSFLQSQTTKLDSYFSAKAEQGDFNGVILV-AEKNKILYQKAFGFADF 77
Query: 47 -------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ S+TKL+TA V + +K P+ + YP
Sbjct: 78 ENKVPNTIHTRFPIGSITKLLTATAVLQLVDKKLLEPDKPVKFYLHEFPYP 128
>gi|146387176|pdb|2UWY|A Chain A, Active Site Restructuring Regulates Ligand Recognition In
Class A Penicillin-Binding Proteins
gi|146387177|pdb|2UWY|B Chain B, Active Site Restructuring Regulates Ligand Recognition In
Class A Penicillin-Binding Proteins
gi|296863372|pdb|2XD1|A Chain A, Active Site Restructuring Regulates Ligand Recognition In
Class A Penicillin-Binding Proteins
gi|296863373|pdb|2XD1|B Chain B, Active Site Restructuring Regulates Ligand Recognition In
Class A Penicillin-Binding Proteins
Length = 494
Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 128 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 187
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 188 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 245
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 246 GYEIPEYGIESLPMGGGIEVTVAQH 270
>gi|123442290|ref|YP_001006271.1| beta-lactamase precursor [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089251|emb|CAL12097.1| beta-lactamase precursor [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 294
Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 29/207 (14%), Positives = 55/207 (26%), Gaps = 5/207 (2%)
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99
++ + S K M A V + + +L I ++ +
Sbjct: 62 KILY-RGA-QRFPFCSTFKFMLAAAVLDQSQSQPNLLNKHINYHESDLLSYAPITRKNLA 119
Query: 100 STMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
MT+ I S N A + + +F + + + L A
Sbjct: 120 CGMTVSELCAATIQYSDNTAANLLIKELGGLAAVNQFARSIGDQMFRLDRWEPDLNTALP 179
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
T A A ++ + D + Q+ T A G K
Sbjct: 180 NDPRDTTTPAAMAASMNKLVLGDALRPAQRSQLAAWLKGNTTGDATIRAGAPTDWIVGDK 239
Query: 218 TGF-TCASGFNIVASAIQGDQSLIAVI 243
TG + +I ++ V+
Sbjct: 240 TGSGDYGTTNDIAVLWPTKGAPIVLVV 266
>gi|46244166|gb|AAP93847.1| beta-lactamase [Enterobacter cloacae]
Length = 152
Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 26/90 (28%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G +A D + S K++ V + + L I +
Sbjct: 36 MDLASGRTLAAWRADERFPMVSTFKVLLCGAVLARVDAGLEQLDRRIHYRQQDLVDYSPV 95
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI 123
S MT+ I S N +
Sbjct: 96 SEKHLTDGMTIGELCAAAITLSDNCAGNLL 125
>gi|522105|dbj|BAA07084.1| Pre BlaB Protein [Proteus vulgaris]
Length = 300
Score = 40.7 bits (93), Expect = 0.36, Method: Composition-based stats.
Identities = 36/200 (18%), Positives = 60/200 (30%), Gaps = 3/200 (1%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ + AS +K+M V +++ +L ITI K+ + + MTL
Sbjct: 67 GEERFAMASTSKVMAVAAVLKASEKQAGLLDKNITIKKSDLVAYSPITEKHLTTGMTLAE 126
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ S N I + L K +F + +N+ + L A
Sbjct: 127 LSAATLQYSDNTAMNKILDYLGGPAKVTQFARSINDVTYRLDRKEPELNTAIHGDPRDTT 186
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
+ L D Q+ N+ A G KTG
Sbjct: 187 SPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTTGDNSIKAGLPKHWVVGDKTGSGDYG 246
Query: 225 GFNIVASAIQGDQ-SLIAVI 243
N +A + LI V+
Sbjct: 247 TTNDIAVIWPENHAPLILVV 266
>gi|237722098|ref|ZP_04552579.1| penicillin-binding protein [Bacteroides sp. 2_2_4]
gi|229448967|gb|EEO54758.1| penicillin-binding protein [Bacteroides sp. 2_2_4]
Length = 468
Score = 40.3 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIF----------PFLSIAETNKLPYYT-LLDTNTGHVIAENYPDH 49
M++ L+++A+++ + + D + +
Sbjct: 1 MKKSLLLVALSVCLLPLWGQQNFSRIDSLIKKMLPEASEVGISVYDLTAKKSLYNYRAEK 60
Query: 50 PWNPASLTKLMTAYVVF 66
PAS KL+TA
Sbjct: 61 LSRPASTMKLLTAITAL 77
>gi|160884902|ref|ZP_02065905.1| hypothetical protein BACOVA_02892 [Bacteroides ovatus ATCC 8483]
gi|156109937|gb|EDO11682.1| hypothetical protein BACOVA_02892 [Bacteroides ovatus ATCC 8483]
Length = 468
Score = 40.3 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIF----------PFLSIAETNKLPYYT-LLDTNTGHVIAENYPDH 49
M++ L+++A+++ + + D + +
Sbjct: 1 MKKSLLLVALSVCLLPLWGQQNFSRIDSLIKKMLPEASEVGISVYDLTAKKSLYNYRAEK 60
Query: 50 PWNPASLTKLMTAYVVF 66
PAS KL+TA
Sbjct: 61 LSRPASTMKLLTAITAL 77
>gi|329297511|ref|ZP_08254847.1| beta-lactam binding protein AmpH [Plautia stali symbiont]
Length = 389
Score = 40.3 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 36/113 (31%)
Query: 1 MRQ---FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLD----------TNTGHVIAENYP 47
M++ FL+ + +A+L + + ++D TG +
Sbjct: 1 MKKRTPFLLALMVAVLPFTSTAQVLPDPLLASQ--IVDRYAEHIFYGSGATGMALVAIDG 58
Query: 48 DHP---------------------WNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ ASL+KLMT+ V+ + + L P
Sbjct: 59 NQRVFASFGETRPGNNVRPQQDSLIRIASLSKLMTSEVMVKMAERGQIRLDDP 111
>gi|153000791|ref|YP_001366472.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica OS185]
gi|151365409|gb|ABS08409.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella baltica OS185]
Length = 502
Score = 40.3 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+D + VI + + PAS KL+TA
Sbjct: 56 LAMDMSNNQVIFSQQAETLFIPASTQKLLTAVSAM 90
>gi|322378014|ref|ZP_08052501.1| penicillin-binding protein 1B [Streptococcus sp. M334]
gi|321280996|gb|EFX58009.1| penicillin-binding protein 1B [Streptococcus sp. M334]
Length = 824
Score = 40.3 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG V+ + D +PAS TK + AY + A + +
Sbjct: 426 VLMDNKTGAVLGFVGGRNYQINQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSASILS 485
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 486 NYPTKFSNGNPIMYVNSPGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 543
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 544 GYEIPEYGIESLPMGGGIEVTVAQH 568
>gi|289178275|gb|ADC85521.1| D-alanyl-meso-diaminopimelate endopeptidase [Bifidobacterium
animalis subsp. lactis BB-12]
Length = 495
Score = 40.3 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
++ + G V+A++ D PAS K +T+ S L + T
Sbjct: 114 SAIIMQAD-GTVVADHAADVAREPASTMKTLTSLAAASVLDMGDTLPTQTF 163
>gi|241190540|ref|YP_002967934.1| D-alanyl-D-alanine carboxypeptidase [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240248932|gb|ACS45872.1| D-alanyl-D-alanine carboxypeptidase [Bifidobacterium animalis
subsp. lactis Bl-04]
Length = 490
Score = 40.3 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
++ + G V+A++ D PAS K +T+ S L + T
Sbjct: 109 SAIIMQAD-GTVVADHAADVAREPASTMKTLTSLAAASVLDMGDTLPTQTF 158
>gi|219682963|ref|YP_002469346.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bifidobacterium animalis subsp. lactis AD011]
gi|219620613|gb|ACL28770.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bifidobacterium animalis subsp. lactis AD011]
Length = 481
Score = 40.3 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
++ + G V+A++ D PAS K +T+ S L + T
Sbjct: 100 SAIIMQAD-GTVVADHAADVAREPASTMKTLTSLAAASVLDMGDTLPTQTF 149
>gi|183602054|ref|ZP_02963423.1| hypothetical secreted protein with D-Ala-D-Ala carboxypeptidase 3
(S13) domain [Bifidobacterium animalis subsp. lactis
HN019]
gi|183218939|gb|EDT89581.1| hypothetical secreted protein with D-Ala-D-Ala carboxypeptidase 3
(S13) domain [Bifidobacterium animalis subsp. lactis
HN019]
Length = 436
Score = 40.3 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
++ + G V+A++ D PAS K +T+ S L + T
Sbjct: 55 SAIIMQAD-GTVVADHAADVAREPASTMKTLTSLAAASVLDMGDTLPTQTF 104
>gi|66817020|gb|AAY56814.1| penicillin-binding protein 1B [Streptococcus pneumoniae ATCC
700669]
Length = 754
Score = 40.3 bits (92), Expect = 0.36, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 397 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 456
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 457 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 514
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 515 GYEIPEYGIESLPMGGGIEVTVAQH 539
>gi|332071171|gb|EGI81666.1| penicillin-binding protein 1b [Streptococcus pneumoniae GA17545]
gi|332071532|gb|EGI82025.1| penicillin-binding protein 1b [Streptococcus pneumoniae GA17570]
Length = 750
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 355 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 414
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 415 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 472
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 473 GYEIPEYGIESLPMGGGIEVTVAQH 497
>gi|280983557|gb|ACZ98826.1| extended-spectrum beta-lactamase GES-15 [Pseudomonas aeruginosa]
Length = 287
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ F MT+ A + + S N + + M + +G S +
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN------- 204
+ RD +T +++ N
Sbjct: 157 LDRKESEMSDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|111657585|ref|ZP_01408322.1| hypothetical protein SpneT_02001220 [Streptococcus pneumoniae
TIGR4]
Length = 810
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 414 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 473
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 474 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 531
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 532 GYEIPEYGIESLPMGGGIEVTVAQH 556
>gi|66817026|gb|AAY56817.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
Length = 757
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 397 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 456
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 457 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 514
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 515 GYEIPEYGIESLPMGGGIEVTVAQH 539
>gi|260172738|ref|ZP_05759150.1| penicillin-binding protein, D-alanyl-D-alanine carboxypeptidase
[Bacteroides sp. D2]
gi|315921027|ref|ZP_07917267.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313694902|gb|EFS31737.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 468
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIF----------PFLSIAETNKLPYYT-LLDTNTGHVIAENYPDH 49
M++ L+++A+++ + + D + +
Sbjct: 1 MKKSLLLVALSVCLLPLWGQQNFSRIDSLIKKMLPEASEIGISVYDLTAKKSLYNYRAEK 60
Query: 50 PWNPASLTKLMTAYVVF 66
PAS KL+TA
Sbjct: 61 LSRPASTMKLLTAITAL 77
>gi|255964399|gb|ACU44517.1| beta-lactamase CTX-M-15 [Escherichia coli]
Length = 226
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 20/141 (14%), Positives = 44/141 (31%), Gaps = 17/141 (12%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + S +K+M A V + + +L + I K+ + TM+L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLA 123
Query: 106 NALKLLIVKSANDIAVAIAES 126
+ S N +
Sbjct: 124 ELSAAALQYSDNVAMNKLIAH 144
>gi|229076810|ref|ZP_04209720.1| Beta-lactamase [Bacillus cereus Rock4-18]
gi|228706299|gb|EEL58562.1| Beta-lactamase [Bacillus cereus Rock4-18]
Length = 323
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 32/225 (14%), Positives = 57/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I+ + + + AS K + A V+ L I +K
Sbjct: 86 IDTGTNQTISYRH-NERFAFASTYKALAAGVLLQQNSID--TLNEVIKFTKEDLVDYSPV 142
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N K +K ++ + + T
Sbjct: 143 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFHKIGGPKGYEKALRQIGDRVTMSDRFETE 202
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L + + A
Sbjct: 203 LNEAIPGDIRDTSTAKAIATNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 262
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 263 WVVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 307
>gi|225859854|ref|YP_002741364.1| penicillin-binding protein 1B [Streptococcus pneumoniae 70585]
gi|225719984|gb|ACO15838.1| penicillin-binding protein 1B [Streptococcus pneumoniae 70585]
Length = 820
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|190364829|gb|ACE77058.1| extended-spectrum beta-lactamase PER-4 [Proteus vulgaris]
Length = 308
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 23/229 (10%), Positives = 62/229 (27%), Gaps = 21/229 (9%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L + +++ K
Sbjct: 62 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 121
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ L+ S + + L + +++ +++G+ T +
Sbjct: 122 VPVQQLLQYSVSHTDNVACDLLFELV-GGPAALHDYIQSMGIKETAVVANEAQ--MHADD 178
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------------- 211
+ S + + + + +
Sbjct: 179 QVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 238
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G G+K G T A+ ++ + + L+ + +R +
Sbjct: 239 KTGTSGIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 286
>gi|149006934|ref|ZP_01830615.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP18-BS74]
gi|147761535|gb|EDK68500.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP18-BS74]
Length = 820
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|328883307|emb|CCA56546.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces venezuelae ATCC
10712]
Length = 467
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
+ + + P L+ L +++DT TG + P PAS K+
Sbjct: 90 LAAVLVPLLADPGLGPLRTASVVDTATGKQLYGEGAGTPMTPASTVKI 137
>gi|299145158|ref|ZP_07038226.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 3_1_23]
gi|298515649|gb|EFI39530.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 3_1_23]
Length = 468
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIF----------PFLSIAETNKLPYYT-LLDTNTGHVIAENYPDH 49
M++ L+++A+++ + + D + +
Sbjct: 1 MKKSLLLVALSVCLLPLWGQQNFSRIDSLIKKMLPEASEVGISVYDLTAKKSLYNYRAEK 60
Query: 50 PWNPASLTKLMTAYVVF 66
PAS KL+TA
Sbjct: 61 LSRPASTMKLLTAITAL 77
>gi|237716931|ref|ZP_04547412.1| penicillin-binding protein [Bacteroides sp. D1]
gi|262405700|ref|ZP_06082250.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 2_1_22]
gi|294643383|ref|ZP_06721202.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides ovatus SD CC 2a]
gi|294810634|ref|ZP_06769284.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides xylanisolvens SD CC 1b]
gi|229442914|gb|EEO48705.1| penicillin-binding protein [Bacteroides sp. D1]
gi|262356575|gb|EEZ05665.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 2_1_22]
gi|292641261|gb|EFF59460.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides ovatus SD CC 2a]
gi|294442176|gb|EFG10993.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides xylanisolvens SD CC 1b]
Length = 468
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIF----------PFLSIAETNKLPYYT-LLDTNTGHVIAENYPDH 49
M++ L+++A+++ + + D + +
Sbjct: 1 MKKSLLLVALSVCLLPLWGQQNFSRIDSLIKKMLPEASEVGISVYDLTAKKSLYNYRAEK 60
Query: 50 PWNPASLTKLMTAYVVF 66
PAS KL+TA
Sbjct: 61 LSRPASTMKLLTAITAL 77
>gi|148992058|ref|ZP_01821832.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP9-BS68]
gi|168489159|ref|ZP_02713358.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP195]
gi|147929107|gb|EDK80118.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP9-BS68]
gi|183572208|gb|EDT92736.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP195]
Length = 820
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|134097005|ref|YP_001102666.1| hypothetical protein SACE_0392 [Saccharopolyspora erythraea NRRL
2338]
gi|291006249|ref|ZP_06564222.1| hypothetical protein SeryN2_17163 [Saccharopolyspora erythraea NRRL
2338]
gi|133909628|emb|CAL99740.1| hypothetical protein SACE_0392 [Saccharopolyspora erythraea NRRL
2338]
Length = 1264
Score = 40.3 bits (92), Expect = 0.37, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMT---AYVVFSFL 69
+S T++D TG + + P PAS KL+T A +
Sbjct: 873 VSAALAGPLANPALGTFGGTVIDAQTGAPVWQQSPGQALTPASTGKLLTMSAALLALDHQ 932
Query: 70 K 70
+
Sbjct: 933 Q 933
>gi|332198706|gb|EGJ12788.1| penicillin-binding protein 1b [Streptococcus pneumoniae GA47368]
Length = 751
Score = 40.3 bits (92), Expect = 0.38, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 355 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 414
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 415 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 472
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 473 GYEIPEYGIESLPMGGGIEVTVAQH 497
>gi|255535069|ref|YP_003095440.1| Beta-lactamase [Flavobacteriaceae bacterium 3519-10]
gi|255341265|gb|ACU07378.1| Beta-lactamase [Flavobacteriaceae bacterium 3519-10]
Length = 295
Score = 40.3 bits (92), Expect = 0.38, Method: Composition-based stats.
Identities = 13/90 (14%), Positives = 23/90 (25%), Gaps = 9/90 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN-------KLPYYTLL-DTNTGHVIAENYPDHPWN 52
M++ + N + + + D I +
Sbjct: 3 MKKITLFFLFISALNFSQNSVLKKQIQQIIKDKNATVAVSVHDFENNKTIH-INGNKKLP 61
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
S+ K A V + + E K L I I
Sbjct: 62 MLSVFKFHIALAVLNEVDEGKLSLDQNIFI 91
>gi|196228854|ref|ZP_03127720.1| beta-lactamase [Chthoniobacter flavus Ellin428]
gi|196227135|gb|EDY21639.1| beta-lactamase [Chthoniobacter flavus Ellin428]
Length = 275
Score = 40.3 bits (92), Expect = 0.38, Method: Composition-based stats.
Identities = 8/83 (9%), Positives = 22/83 (26%), Gaps = 1/83 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+ D T + D ++ AS K+ +F + + L + +
Sbjct: 26 VFDYETDRT-FSHEGDRWFHAASTMKVAVLLALFHAVDTGRVRLEDRLHVRNRFRSIVDR 84
Query: 93 NSTFKKGSTMTLDNALKLLIVKS 115
+ + + +
Sbjct: 85 SIFRVQRDRDADSAVHRRVGRSM 107
>gi|90419093|ref|ZP_01227004.1| putative beta-lactamase [Aurantimonas manganoxydans SI85-9A1]
gi|90337173|gb|EAS50878.1| putative beta-lactamase [Aurantimonas manganoxydans SI85-9A1]
Length = 299
Score = 40.3 bits (92), Expect = 0.38, Method: Composition-based stats.
Identities = 37/258 (14%), Positives = 71/258 (27%), Gaps = 17/258 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLL-------DTNTGHVI--------AENY 46
R+ ++ A+ M++ AE + D G I +
Sbjct: 10 RRSVLSAAVVMVALCAGPAVRAEDATARLADTVQGLEERLDARIGIFIRDSGSDWQWGHR 69
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
D + AS K + V ++ L P+ I + ++GSTMT+
Sbjct: 70 EDERFLMASTFKSVLCGAVLEQAEQGALALDEPVKIRAEDILSYAPVTETRQGSTMTIGE 129
Query: 107 ALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
S N A + + + F++ + + L +
Sbjct: 130 LCLATADMSDNTAANLLLDRLGGPQAVTAFLRGIGDAVTRLDRTEPDLNIFAPGDPRDTT 189
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
+ + D + Q++ G A K+G
Sbjct: 190 SPKAMATSWETMLVGDGLRPASRQQLREWMRHGGVTGKLIRASTPKDWEVVDKSGGGQTH 249
Query: 225 GFNIVASAIQGDQSLIAV 242
N+VA ++ I V
Sbjct: 250 TRNLVAMLTPPGRAPIFV 267
>gi|66817022|gb|AAY56815.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
Length = 751
Score = 40.3 bits (92), Expect = 0.38, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 394 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 453
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 454 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 511
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 512 GYEIPEYGIESLPMGGGIEVTVAQH 536
>gi|270289830|ref|ZP_06196056.1| beta-lactamase class A [Pediococcus acidilactici 7_4]
gi|270281367|gb|EFA27199.1| beta-lactamase class A [Pediococcus acidilactici 7_4]
Length = 400
Score = 40.3 bits (92), Expect = 0.38, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 8/220 (3%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDN 106
D P AS KL + +K+ + L+ T++ + + G+ +++ +
Sbjct: 176 DQPQRAASDIKLFVMIAAYQQVKDGELSLSDDYTLTDSDKVDGTGKLREMADGTKISIKD 235
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ ++ S N A + L + M T L +Y
Sbjct: 236 LIGYMMEDSDNTAANIMIRKLGGMAAVNHQIDKMGATDTKLERMLMDTDALE--DGKDNY 293
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
T+A+D+ +I Y + +K KTG
Sbjct: 294 TSAKDLGTALKKIYNHQMVSRKYDEEMLTILKQNGNHTKLPHDLPTEATVYNKTGEFDDY 353
Query: 225 GFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLLSMG 263
G A+ + + + V++ R++ ++ S G
Sbjct: 354 GVENDAAIFGNQKGAFVIVVM--SQDGQRDEQINAMNSFG 391
>gi|126457951|ref|YP_001075336.1| class A beta-lactamase [Burkholderia pseudomallei 1106a]
gi|167849310|ref|ZP_02474818.1| class A beta-lactamase [Burkholderia pseudomallei B7210]
gi|237510236|ref|ZP_04522951.1| beta-lactamase [Burkholderia pseudomallei MSHR346]
gi|242313306|ref|ZP_04812323.1| class A beta-lactamase [Burkholderia pseudomallei 1106b]
gi|126231719|gb|ABN95132.1| class A beta-lactamase [Burkholderia pseudomallei 1106a]
gi|235002441|gb|EEP51865.1| beta-lactamase [Burkholderia pseudomallei MSHR346]
gi|242136545|gb|EES22948.1| class A beta-lactamase [Burkholderia pseudomallei 1106b]
Length = 314
Score = 40.3 bits (92), Expect = 0.38, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 30 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 88
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 89 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 148
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + + + + + L A + T
Sbjct: 149 AATLQYSDNTAANLLIALLGGPQAVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 208
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 209 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 268
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 269 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 300
>gi|13649898|gb|AAK37506.1|AF326770_1 beta-lactamase precursor [Burkholderia pseudomallei]
Length = 295
Score = 40.3 bits (92), Expect = 0.38, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 11 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 69
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 70 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 129
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + + + + + L A + T
Sbjct: 130 AATLQYSDNTAANLLIALLGGPQAVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 189
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 190 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 249
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 250 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 281
>gi|220925314|ref|YP_002500616.1| penicillin-binding protein transpeptidase [Methylobacterium
nodulans ORS 2060]
gi|219949921|gb|ACL60313.1| penicillin-binding protein transpeptidase [Methylobacterium
nodulans ORS 2060]
Length = 595
Score = 40.3 bits (92), Expect = 0.38, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 34/135 (25%), Gaps = 25/135 (18%)
Query: 26 NKLPYYTLLDTNTGHVIA--------------ENYPDH-------PWNPASLTKLMTAYV 64
K +LD NTG VIA PD + S K MT +
Sbjct: 252 AKAAAAMILDVNTGEVIALASLPDFDPNEPADALNPDRINRMNVGVYEMGSTFKAMTLAM 311
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
K ++ + + T + ++ S A
Sbjct: 312 ALESGKFTVNSTFD----TRGGVLHWGRQKIHEYHGTNRVITLPEVFTHSSNIGSAKMAL 367
Query: 125 ESLCKTEKKFVQHMN 139
K F++ M
Sbjct: 368 GVGVPGHKAFLRKMG 382
>gi|108759041|ref|YP_629330.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Myxococcus xanthus DK 1622]
gi|108462921|gb|ABF88106.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Myxococcus xanthus DK 1622]
Length = 748
Score = 40.3 bits (92), Expect = 0.38, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
A+ S + L A L+ + G V+ + D NPAS KL+T+
Sbjct: 39 ALKSALLQVLQRAPLKASRMGVLMQSLDDGAVVFSHNADELLNPASNVKLVTSAAAL 95
>gi|332198912|gb|EGJ12993.1| penicillin-binding protein 1b [Streptococcus pneumoniae GA47901]
Length = 751
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 355 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 414
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 415 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 472
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 473 GYEIPEYGIESLPMGGGIEVTVAQH 497
>gi|303256062|ref|ZP_07342084.1| penicillin-binding protein 1B [Streptococcus pneumoniae BS455]
gi|302596978|gb|EFL64102.1| penicillin-binding protein 1B [Streptococcus pneumoniae BS455]
Length = 752
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 356 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 415
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 416 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 473
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 474 GYEIPEYGIESLPMGGGIEVTVAQH 498
>gi|168484389|ref|ZP_02709341.1| penicillin-binding protein 1B [Streptococcus pneumoniae CDC1873-00]
gi|172042363|gb|EDT50409.1| penicillin-binding protein 1B [Streptococcus pneumoniae CDC1873-00]
Length = 821
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|149002928|ref|ZP_01827839.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP14-BS69]
gi|237821718|ref|ZP_04597563.1| penicillin-binding protein 1B [Streptococcus pneumoniae CCRI
1974M2]
gi|147758931|gb|EDK65926.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP14-BS69]
Length = 752
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 356 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 415
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 416 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 473
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 474 GYEIPEYGIESLPMGGGIEVTVAQH 498
>gi|38141991|dbj|BAD00798.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38141995|dbj|BAD00800.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38141999|dbj|BAD00802.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
Length = 820
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|304385926|ref|ZP_07368268.1| beta-lactamase class A [Pediococcus acidilactici DSM 20284]
gi|304327986|gb|EFL95210.1| beta-lactamase class A [Pediococcus acidilactici DSM 20284]
Length = 400
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 33/220 (15%), Positives = 69/220 (31%), Gaps = 8/220 (3%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDN 106
D P AS KL + +K+ + L+ T++ + + G+ +++ +
Sbjct: 176 DQPQRAASDIKLFVMIAAYQQVKDGELSLSDDYTLTDSDKVDGTGKLREMADGTKISIKD 235
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ ++ S N A + L + M T L +Y
Sbjct: 236 LIGYMMEDSDNTAANIMIRKLGGMAAVNHQIDKMGATDTKLERMLMDTDALE--DGKDNY 293
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
T+A+D+ +I Y + +K KTG
Sbjct: 294 TSAKDLGTALKKIYNHQMVSRKYDEEMLTILKQNGNHTKLPHDLPTEATVYNKTGEFDDY 353
Query: 225 GFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSASLLSMG 263
G A+ + + + V++ R++ ++ S G
Sbjct: 354 GVENDAAIFGNQKGAFVIVVM--SQDGQRDEQINAMNSFG 391
>gi|295085875|emb|CBK67398.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Bacteroides xylanisolvens XB1A]
Length = 468
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIF----------PFLSIAETNKLPYYT-LLDTNTGHVIAENYPDH 49
M++ L+++A+++ + + D + +
Sbjct: 1 MKKSLLLVALSVCLLPLWGQQNFSRIDSLIKKMLPEASEVGISVYDLTAKKSLYNYRAEK 60
Query: 50 PWNPASLTKLMTAYVVF 66
PAS KL+TA
Sbjct: 61 LSRPASTMKLLTAITAL 77
>gi|284034337|ref|YP_003384268.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Kribbella flavida DSM 17836]
gi|283813630|gb|ADB35469.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Kribbella flavida DSM 17836]
Length = 456
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ L+ + ++ D + G + P+ PAS KL+T
Sbjct: 66 ALSAALADPSLGRHFGASVYDASRGKQVYSVGAAKPFVPASTLKLLTTVAALEA 119
>gi|227538333|ref|ZP_03968382.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227241848|gb|EEI91863.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 416
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 45/123 (36%), Gaps = 10/123 (8%)
Query: 46 YPDHPWNPASLTKLMTAYVVFS---FLKEKKAMLTTPITI-SKNASEYPPSNSTFKKGST 101
P + PAS KL TA + L K TP+ I S + + + +
Sbjct: 74 NPHWYFYPASTVKLPTAILALEKINELNIKGLTKDTPLRIDSAFEKQTRVDHDSSSETGL 133
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
++ ++ +++ S ND + E + + +N K G + +N +
Sbjct: 134 PSVGQYVRKILLTSDNDAQNRLFEFI------GREELNKKLKKYGTQNSRIVNRLAIGDK 187
Query: 162 GHY 164
G +
Sbjct: 188 GIW 190
>gi|332071367|gb|EGI81861.1| penicillin-binding protein 1b [Streptococcus pneumoniae GA41301]
Length = 751
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 355 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 414
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 415 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 472
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 473 GYEIPEYGIESLPMGGGIEVTVAQH 497
>gi|261880089|ref|ZP_06006516.1| D-alanyl-D-alanine carboxypeptidase [Prevotella bergensis DSM
17361]
gi|270333244|gb|EFA44030.1| D-alanyl-D-alanine carboxypeptidase [Prevotella bergensis DSM
17361]
Length = 425
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 27/256 (10%), Positives = 58/256 (22%), Gaps = 28/256 (10%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPS 92
LD ++ + PAS K +TA L T + ++
Sbjct: 87 LDADS--ALYRFNERQLMRPASTMKAITAITALDRLGGSYQFKTELCYTGQVDSCVLQGD 144
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ ++ + I +L K ++ + + +
Sbjct: 145 VYCVGGFDPRFNTDDMRAFVEGLHKMGIDTIRGNLYA--DKSMKDADLLGEGWCWDDDNP 202
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKT--------DFPQYMHYFQIKGLEIKGKKYPNTN 204
+ + ++ R L P + I
Sbjct: 203 VLSPLLISRKDQFMDRFYTELRKGGIYLAGAIGNKRKPHEASCIVRRFHTIDQILMRMMK 262
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA------- 257
+ + A + + + SA + L+ LG R +
Sbjct: 263 ESDNLYAEAMFYQLAASTGNHPASAKSAKAVIRQLVN-KLGLDGSRYRFADGSGLSLYNY 321
Query: 258 -------SLLSMGFYN 266
LL + N
Sbjct: 322 VSVELEVRLLRYAYEN 337
>gi|149023796|ref|ZP_01836257.1| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Streptococcus
pneumoniae SP23-BS72]
gi|147929592|gb|EDK80585.1| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Streptococcus
pneumoniae SP23-BS72]
Length = 821
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|62738935|pdb|2BG1|A Chain A, Active Site Restructuring Regulates Ligand Recognition In
Classa Penicillin-Binding Proteins (Pbps)
gi|296863374|pdb|2XD5|A Chain A, Structural Insights Into The Catalytic Mechanism And The
Role Of Streptococcus Pneumoniae Pbp1b
gi|296863375|pdb|2XD5|B Chain B, Structural Insights Into The Catalytic Mechanism And The
Role Of Streptococcus Pneumoniae Pbp1b
Length = 494
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 128 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 187
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 188 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 245
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 246 GYEIPEYGIESLPMGGGIEVTVAQH 270
>gi|38142019|dbj|BAD00812.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
Length = 820
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|225861915|ref|YP_002743424.1| penicillin-binding protein 1B [Streptococcus pneumoniae
Taiwan19F-14]
gi|298229998|ref|ZP_06963679.1| penicillin-binding protein 1B [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254072|ref|ZP_06977658.1| penicillin-binding protein 1B [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298501597|ref|YP_003723537.1| penicillin-binding protein 1b [Streptococcus pneumoniae
TCH8431/19A]
gi|38141983|dbj|BAD00794.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142007|dbj|BAD00806.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142011|dbj|BAD00808.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142015|dbj|BAD00810.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142017|dbj|BAD00811.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142021|dbj|BAD00813.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142033|dbj|BAD00819.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|225727961|gb|ACO23812.1| penicillin-binding protein 1B [Streptococcus pneumoniae
Taiwan19F-14]
gi|298237192|gb|ADI68323.1| penicillin-binding protein 1b [Streptococcus pneumoniae
TCH8431/19A]
Length = 821
Score = 40.3 bits (92), Expect = 0.39, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|291514759|emb|CBK63969.1| Cell division protein FtsI/penicillin-binding protein 2 [Alistipes
shahii WAL 8301]
Length = 753
Score = 40.3 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 16/66 (24%)
Query: 32 TLLDTNTGHVIA----ENYPD------------HPWNPASLTKLMTAYVVFSFLKEKKAM 75
+++ +TG ++A D P S KL T + + +
Sbjct: 312 IVMEVHTGEILAMVNLGRNADGSFAERENYALGRSMEPGSTFKLATMLTLLDDARMPVST 371
Query: 76 LTTPIT 81
+
Sbjct: 372 VYDTHN 377
>gi|237650578|ref|ZP_04524830.1| penicillin-binding protein 1B [Streptococcus pneumoniae CCRI 1974]
Length = 821
Score = 40.3 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|38141969|dbj|BAD00787.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142025|dbj|BAD00815.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142029|dbj|BAD00817.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
Length = 821
Score = 40.3 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|332198520|gb|EGJ12603.1| penicillin-binding protein 1b [Streptococcus pneumoniae GA41317]
Length = 751
Score = 40.3 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 355 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 414
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 415 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 472
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 473 GYEIPEYGIESLPMGGGIEVTVAQH 497
>gi|325971408|ref|YP_004247599.1| beta-lactamase [Spirochaeta sp. Buddy]
gi|324026646|gb|ADY13405.1| beta-lactamase [Spirochaeta sp. Buddy]
Length = 420
Score = 40.3 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 14/102 (13%), Positives = 36/102 (35%), Gaps = 20/102 (19%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP------YYTLLDTNTGHVIAEN--------- 45
M+ L+I+ +++ + + E + ++ + G V+ +
Sbjct: 1 MKVLLLIL-VSLAAGSGAWAQEYEVLEQIDRLVNLSGIVMVADRGEVVYQQSFGFADHQS 59
Query: 46 ----YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ ASLTK TA + ++ + + P+ +
Sbjct: 60 KQVIDEHTLFPLASLTKPFTAMAIGLLQEQGRLDIDDPVAMY 101
>gi|170737715|ref|YP_001778975.1| Beta-lactamase [Burkholderia cenocepacia MC0-3]
gi|169819903|gb|ACA94485.1| Beta-lactamase [Burkholderia cenocepacia MC0-3]
Length = 312
Score = 40.3 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 42/226 (18%), Positives = 67/226 (29%), Gaps = 5/226 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT +G VI E+ + S K M + V + E+ +L +T +K
Sbjct: 73 IDTASGRVI-EHRAGERFPFCSTFKAMLSAAVLAQSVERPGLLQQRVTYTKADLVNYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
S GS MT+ + I S N A + + + + + + + L T
Sbjct: 132 SEKHVGSGMTVAALCEAAIQYSDNSAANLLMKLIGGPSAVTAYARSIGDDAFRLDRWETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L D Q+ K A
Sbjct: 192 LNTALPGDPRDTTTPAAMAASLRVLTLGDALPAAQRAQLVAWLRGNKVGDKRMRAGVPAG 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDR-NTRNKV 255
G KTG N + ++ + R + R K
Sbjct: 252 WVVGDKTGTGDYGTTNDAGVIWPTSRAPIVLAVYYTQTRADARAKD 297
>gi|149011955|ref|ZP_01833103.1| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Streptococcus
pneumoniae SP19-BS75]
gi|221232807|ref|YP_002511961.1| penicillin-binding protein 1B [Streptococcus pneumoniae ATCC
700669]
gi|225855586|ref|YP_002737098.1| penicillin-binding protein 1B [Streptococcus pneumoniae JJA]
gi|38141961|dbj|BAD00783.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38141963|dbj|BAD00784.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38141973|dbj|BAD00789.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38141975|dbj|BAD00790.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38141979|dbj|BAD00792.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38141989|dbj|BAD00797.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142001|dbj|BAD00803.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142003|dbj|BAD00804.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142023|dbj|BAD00814.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142027|dbj|BAD00816.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142031|dbj|BAD00818.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|38142035|dbj|BAD00820.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|147763910|gb|EDK70843.1| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Streptococcus
pneumoniae SP19-BS75]
gi|220675269|emb|CAR69862.1| penicillin-binding protein 1B [Streptococcus pneumoniae ATCC
700669]
gi|225723160|gb|ACO19013.1| penicillin-binding protein 1B [Streptococcus pneumoniae JJA]
Length = 821
Score = 40.3 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|88192667|pdb|2CC1|A Chain A, Crystal Structure Of The Class A Beta-Lactamase From
Mycobacterium Fortuitum
Length = 262
Score = 40.3 bits (92), Expect = 0.40, Method: Composition-based stats.
Identities = 30/213 (14%), Positives = 63/213 (29%), Gaps = 6/213 (2%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
+ +G I PD + S K A V + + L + + +A +
Sbjct: 24 NLQSGRRITHR-PDEMFAMCSTFKGYVAARVLQMAEHGEISLDNRVFVDADALVPNSPVT 82
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHF 152
+ G+ MTL + + +S N A + +++ F + + + L
Sbjct: 83 EARAGAEMTLAELCQAALQRSDNTAANLLLKTIGGPAAVTAFARSVGDERTRLDRWEVEL 142
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ + T+ + +R + + ++ A
Sbjct: 143 NS--AIPGDPRDTSTPAALAVGYRAILAGDALSPPQRGLLEDWMRANQTSSMRAGLPEGW 200
Query: 213 ADGMKTGFTCASGFNIVASAI-QGDQSLIAVIL 244
KTG N A Q L+ V++
Sbjct: 201 TTADKTGSGDYGSTNDAGIAFGPDGQRLLLVMM 233
>gi|83859454|ref|ZP_00952975.1| similar to penicillin-binding protein [Oceanicaulis alexandrii
HTCC2633]
gi|83852901|gb|EAP90754.1| similar to penicillin-binding protein [Oceanicaulis alexandrii
HTCC2633]
Length = 370
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + ASLTK MTA +V S +E L P
Sbjct: 74 ADSVFELASLTKHMTALMVLSLAEEGHLSLDDP 106
>gi|301795026|emb|CBW37491.1| penicillin-binding protein 1B [Streptococcus pneumoniae INV104]
Length = 821
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|209694179|ref|YP_002262107.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Aliivibrio
salmonicida LFI1238]
gi|208008130|emb|CAQ78272.1| penicillin-binding protein 4 precursor [Aliivibrio salmonicida
LFI1238]
Length = 469
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKL--PYYTLLD-TNTGHVIAENYPDHPWNPASLTK 58
R F++ +++ S S + +++ + + + + PAS K
Sbjct: 5 RLFILSLSLYSFSTFASIPSSIQLLPSGSRAAIVVESLHDQSIEFQQKENELLPPASTLK 64
Query: 59 LMTAY 63
+ TA
Sbjct: 65 VATAL 69
>gi|3644036|gb|AAC43036.1| beta-lactamase [Xanthomonas campestris pv. campestris]
Length = 295
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 65/208 (31%), Gaps = 6/208 (2%)
Query: 33 LLDTNTG-HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
LLD+ +G + + + S K + A V + + + LT I I +
Sbjct: 55 LLDSGSGWRI--GQRENERFPMCSTFKFVLAAAVLQRVDKGELRLTQQIKIRASDMLEHA 112
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSA 149
+ G ++++ + ++ S N A + +F++ + +T
Sbjct: 113 PVTERHVGGSLSVAELCQATMIHSDNPAANLLFPLIGDPPGLTRFLRGIGDTKTRSDRLE 172
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A G T A A L + D Q Q+ I + + A
Sbjct: 173 AMNGFAPGEP-RDTTTPAAMAATLRTLLLGDALQPASRKQLTAWMIDNRTGDDCLRAGLP 231
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ 237
G KTG N +A +
Sbjct: 232 RDWKIGDKTGSNGTDTRNDIAIIWPPGR 259
>gi|323710380|gb|ADY02591.1| extended spectrum beta-lactamase CTX-M3 [Shigella sonnei]
gi|323710382|gb|ADY02592.1| extended spectrum beta-lactamase CTX-M3 [Shigella dysenteriae 3]
gi|323710384|gb|ADY02593.1| extended spectrum beta-lactamase CTX-M3 [Shigella flexneri 2a]
gi|323710386|gb|ADY02594.1| extended spectrum beta-lactamase CTX-M3 [Shigella dysenteriae 2a]
Length = 212
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 42 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 99
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
TM+L + S N +
Sbjct: 100 KHVNGTMSLAELSAAALQYSDNVAMNKLIAH 130
>gi|219920915|emb|CAQ76635.1| beta-lactamase [Klebsiella oxytoca]
Length = 275
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + +L + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTXKVMAAAAVLKQSESHPDVLNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 234 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 264
>gi|157956212|gb|ABW06475.1| extended-spectrum beta-lactamase CTX-M-15 [Klebsiella pneumoniae]
Length = 236
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 27 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 84
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
TM+L + S N +
Sbjct: 85 KHVNGTMSLAELSAAALQYSDNVAMNKLIAH 115
>gi|118132717|gb|ABK60211.1| extended-spectrum beta-lactamase CTX-M-3 [Shigella boydii]
Length = 208
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 33 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 90
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
TM+L + S N +
Sbjct: 91 KHVNGTMSLAELSAAALQYSDNVAMNKLIAH 121
>gi|68271949|gb|AAY89241.1| putative beta-lactamase [uncultured bacterium BAC-L1N9]
Length = 523
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 27/103 (26%)
Query: 4 FLVIIAMAMLSNI---FPFLSIAETNKL-----------PYYTLLDTNTGHVIAEN---- 45
L +IA+A+ + + + P + G V+ +
Sbjct: 9 ILTLIAVALSTFPTLPLLAQAAPKELDATIAGILKQFNQPGAAVAVIRNGKVVFQQGWGV 68
Query: 46 ---------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ AS TK MTA + ++E K
Sbjct: 69 QNVVTGTRVNEHTRFQVASNTKAMTAAALAILVEEGKLSWDDR 111
>gi|68165963|gb|AAY87935.1| CTX-M-3 beta-lactamase [Klebsiella pneumoniae]
Length = 214
Score = 40.3 bits (92), Expect = 0.41, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 2/91 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + + +L + I K+ +
Sbjct: 40 ADNSQILY--RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAE 97
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
TM+L + S N +
Sbjct: 98 KHVNGTMSLAELSAAALQYSDNVAMNKLIAH 128
>gi|328675763|gb|AEB28438.1| D-alanyl-D-alanine carboxypeptidase [Francisella cf. novicida
3523]
Length = 464
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 15/74 (20%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNK--------------LPYYT-LLDTNTGHVIAENYPDH 49
L++ + + +P + ++D+ VI D
Sbjct: 9 LLLFFILVPFIAYPLAVNSIELNQVLDNSIKQNNLQSAQIAVKIIDSQKNTVILSRNADK 68
Query: 50 PWNPASLTKLMTAY 63
+ PAS TKL+T
Sbjct: 69 NFVPASNTKLLTGI 82
>gi|295690758|ref|YP_003594451.1| beta-lactamase [Caulobacter segnis ATCC 21756]
gi|295432661|gb|ADG11833.1| Beta-lactamase [Caulobacter segnis ATCC 21756]
Length = 300
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 31/217 (14%), Positives = 55/217 (25%), Gaps = 9/217 (4%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+LDT+ G D + S K + + + + + L +T
Sbjct: 55 VLDTHDGRR-FAWRGDQRFRMCSTIKAPLSAAILRRVDQGRERLDRRVTFGPEVLMDNSP 113
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG-----L 147
MT+ + I S N A + E+L + + +G
Sbjct: 114 IVEKHVQDGMTIGQLCEATITLSDNAAANLLFEALGGA-SGGPAALTRFLRAIGDQTTRS 172
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
G TT + +W+ + + +
Sbjct: 173 DRLEPELNRGPPDDPRDTTTPAAMLATWKTLLLDDALSPASRQQFRDWLIANKTGDRRLR 232
Query: 208 GTFL--GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
G KTG N VA A + I +
Sbjct: 233 AGLPPGWRVGDKTGNNGRDITNDVAIAWPPGRGPILI 269
>gi|168577130|ref|ZP_02722950.1| penicillin-binding protein 1B [Streptococcus pneumoniae MLV-016]
gi|183577248|gb|EDT97776.1| penicillin-binding protein 1B [Streptococcus pneumoniae MLV-016]
Length = 821
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|148998106|ref|ZP_01825619.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP11-BS70]
gi|307068711|ref|YP_003877677.1| membrane carboxypeptidase [Streptococcus pneumoniae AP200]
gi|147756116|gb|EDK63159.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP11-BS70]
gi|306410248|gb|ADM85675.1| Membrane carboxypeptidase (penicillin-binding protein)
[Streptococcus pneumoniae AP200]
Length = 821
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|15901914|ref|NP_346518.1| penicillin-binding protein 1B [Streptococcus pneumoniae TIGR4]
gi|14973609|gb|AAK76158.1| penicillin-binding protein 1B [Streptococcus pneumoniae TIGR4]
Length = 821
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|38141981|dbj|BAD00793.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
Length = 821
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|38141985|dbj|BAD00795.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|301802769|emb|CBW35543.1| penicillin-binding protein 1B [Streptococcus pneumoniae INV200]
Length = 821
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|38142013|dbj|BAD00809.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
Length = 821
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|319957738|ref|YP_004169001.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Nitratifractor
salsuginis DSM 16511]
gi|319420142|gb|ADV47252.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Nitratifractor
salsuginis DSM 16511]
Length = 466
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 10/87 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE-------TNKLPYYTLL---DTNTGHVIAENYPDHP 50
M + L ++ + + + E + P + G +A++ D
Sbjct: 1 MMRILGLLWLLISALPLAAYLPPEIHTLLDKDHIAPSQVSIYITPVKKGAALAKHNVDTR 60
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLT 77
PAS+ KL T Y + T
Sbjct: 61 RKPASVIKLTTTYSALREFGPRWRWPT 87
>gi|238060056|ref|ZP_04604765.1| beta-lactamase [Micromonospora sp. ATCC 39149]
gi|237881867|gb|EEP70695.1| beta-lactamase [Micromonospora sp. ATCC 39149]
Length = 442
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + S+TK MTA +V L P
Sbjct: 54 DADRQYRLGSITKTMTAVLVMQQRDAGALALDDP 87
>gi|114778162|ref|ZP_01453049.1| hypothetical protein SPV1_00852 [Mariprofundus ferrooxydans PV-1]
gi|114551580|gb|EAU54134.1| hypothetical protein SPV1_00852 [Mariprofundus ferrooxydans PV-1]
Length = 319
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 29/207 (14%), Positives = 49/207 (23%), Gaps = 20/207 (9%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
A+ D ASL K+ F +K+ K L + SN M
Sbjct: 80 AQVNGDQMMYAASLPKIAVLLTAFELIKQGKLPLNRETRDTMTRMIRYSSNKDATAMIDM 139
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG--VVQ 160
+ I + + + +N +G H +
Sbjct: 140 VGKDY---------------INTVMESPKYRLYDPKHNGGLWVGKEYAGTAPFHRDPLHN 184
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMK 217
H +A +A + ++T Y + + +
Sbjct: 185 LSHGASAMQVARFYYMMQTGQLVSPRYSAEMKGIMADSGINHKFVKGLDAMHNPDIRMYR 244
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVIL 244
T A G IAV L
Sbjct: 245 KSGTWRDWHADSALIEHGGHRYIAVAL 271
>gi|313765284|gb|EFS36648.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL013PA1]
gi|313815347|gb|EFS53061.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL059PA1]
gi|313828786|gb|EFS66500.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL063PA2]
gi|314916063|gb|EFS79894.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL005PA4]
gi|314917214|gb|EFS81045.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL050PA1]
gi|314921714|gb|EFS85545.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL050PA3]
gi|314931079|gb|EFS94910.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL067PA1]
gi|314955052|gb|EFS99458.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL027PA1]
gi|314959091|gb|EFT03193.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL002PA1]
gi|314969689|gb|EFT13787.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL037PA1]
gi|315099489|gb|EFT71465.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL059PA2]
gi|315102005|gb|EFT73981.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL046PA1]
gi|315110073|gb|EFT82049.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL030PA2]
gi|327454529|gb|EGF01184.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL087PA3]
gi|327456599|gb|EGF03254.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL083PA2]
gi|328755583|gb|EGF69199.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL087PA1]
gi|328756909|gb|EGF70525.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Propionibacterium acnes HL025PA2]
Length = 457
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+A + + + + ++D G + ++ + PAS K++TA +
Sbjct: 71 VAATIANRVKSAGAAPGVLGAD---IMDAAIGETLYQSGQNSLLTPASNLKVLTAIALLD 127
Query: 68 FLKEKK 73
Sbjct: 128 CTDAGH 133
>gi|306834901|ref|ZP_07467958.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
gi|304569200|gb|EFM44708.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49726]
Length = 292
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 28/240 (11%), Positives = 63/240 (26%), Gaps = 47/240 (19%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY-----TLLDTNTGHVIAENYPDHPWNPAS 55
M++ + + LS + + A + + ++G ++ S
Sbjct: 11 MKKLAISSLVTALSFVTIPAAQAVSLDSQSVPARTQITVRHDSGATVSTANSHESRPALS 70
Query: 56 LTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
L+K+ Y+ + LK ++
Sbjct: 71 LSKI---YLGYWVLKYGSVS---------------------------DKAQVEHMIRYSG 100
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
+ ++++ Q + + + GLS TH+ G Q AR A +
Sbjct: 101 DAVAS--------DLDRRYPQAIPSIIQEFGLSETHYTGYWGTTQTSTEDIARFTAEIQH 152
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
++ ++ G G K G++ + S G
Sbjct: 153 DPIAAPIFAGMATAAPVAADGYRQ----DFGTDHIPGVWGTKFGWSDDRTIHASVSTGHG 208
>gi|303259600|ref|ZP_07345576.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP-BS293]
gi|303262045|ref|ZP_07347990.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP14-BS292]
gi|303264501|ref|ZP_07350420.1| penicillin-binding protein 1B [Streptococcus pneumoniae BS397]
gi|303266778|ref|ZP_07352659.1| penicillin-binding protein 1B [Streptococcus pneumoniae BS457]
gi|303269002|ref|ZP_07354785.1| penicillin-binding protein 1B [Streptococcus pneumoniae BS458]
gi|302636685|gb|EFL67175.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP14-BS292]
gi|302639152|gb|EFL69611.1| penicillin-binding protein 1B [Streptococcus pneumoniae SP-BS293]
gi|302641469|gb|EFL71833.1| penicillin-binding protein 1B [Streptococcus pneumoniae BS458]
gi|302643686|gb|EFL73952.1| penicillin-binding protein 1B [Streptococcus pneumoniae BS457]
gi|302645871|gb|EFL76099.1| penicillin-binding protein 1B [Streptococcus pneumoniae BS397]
Length = 821
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|283455475|ref|YP_003360039.1| hypothetical protein BDP_0546 [Bifidobacterium dentium Bd1]
gi|283102109|gb|ADB09215.1| Conserved hypothetical secreted protein with D-Ala-D-Ala
carboxypeptidase 3 (S13) domain [Bifidobacterium dentium
Bd1]
Length = 481
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 21 SIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ E Y + D G V+AE+ D PAS K +TAY V + L
Sbjct: 91 AATEGIGGDYSIAIADAK-GEVVAESGIDETRVPASTMKTLTAYAVATTLDMG 142
>gi|260431443|ref|ZP_05785414.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Silicibacter lacuscaerulensis ITI-1157]
gi|260415271|gb|EEX08530.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Silicibacter lacuscaerulensis ITI-1157]
Length = 492
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 14 SNIFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + A K + D TG + + PAS+ K +TA
Sbjct: 41 LSAPERIVAAAGLKGEVAFAVADVKTGAELEAYEGERGLPPASVAKALTALYALD 95
>gi|171741156|ref|ZP_02916963.1| hypothetical protein BIFDEN_00223 [Bifidobacterium dentium ATCC
27678]
gi|171276770|gb|EDT44431.1| hypothetical protein BIFDEN_00223 [Bifidobacterium dentium ATCC
27678]
Length = 459
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 21 SIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ E Y + D G V+AE+ D PAS K +TAY V + L
Sbjct: 69 AATEGIGGDYSIAIADAK-GEVVAESGIDETRVPASTMKTLTAYAVATTLDMG 120
>gi|83774923|dbj|BAE65046.1| unnamed protein product [Aspergillus oryzae]
Length = 411
Score = 40.3 bits (92), Expect = 0.42, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 19/147 (12%)
Query: 32 TLLDTNTGHVIAEN----------YP-----DHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+D ++G +I D + AS+TKL+TA V ++ L
Sbjct: 25 IAID-SSGKIIYHRAAGKASLDDENAPALQTDSLYWIASMTKLVTAIAVMQLVERGIVSL 83
Query: 77 TT--PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ + + + K+ + A + +S +K+
Sbjct: 84 DEDVRTIVPELRDIQILEDIRNESNQLHLKPVQGKITLRNLMCHTAGFVYDSSSPLLQKW 143
Query: 135 VQHMNNTSKNL-GLSATHFMNAHGVVQ 160
+ T+ G A +
Sbjct: 144 SKSHGRTAYTFCGSMAGYHHPLLFEPD 170
>gi|94502823|gb|ABF29640.1| beta-lactamase [Escherichia coli]
Length = 189
Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 28/186 (15%), Positives = 47/186 (25%), Gaps = 4/186 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ V+ D + S +K+M A V + +K +L P+ I +
Sbjct: 4 ADNTQVLY--RGDERFPMCSTSKVMAAAAVLKQSETQKQLLNQPVEIKPADLVNYNPIAE 61
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
TMTL + S N + F + + + + L +
Sbjct: 62 KHVNGTMTLAELSAAALQYSDNTAMNKLIAQLGGPGGVTAFARAIGDETFRLDRTEPTLN 121
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
A T L Q+ + A
Sbjct: 122 TAIPGDPRDTTTPRAMAQTLRQLTLGHALGETQRAQLVTWLKGNTTGAASIRAGLPTSWT 181
Query: 214 DGMKTG 219
G KTG
Sbjct: 182 VGDKTG 187
>gi|89899009|ref|YP_521480.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodoferax ferrireducens T118]
gi|89343746|gb|ABD67949.1| D-Ala-D-Ala carboxypeptidase PBP3. Serine peptidase. MEROPS
family S13 [Rhodoferax ferrireducens T118]
Length = 499
Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 14/78 (17%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLP-----------YYTLLDTNTGHV--IAENYPDH 49
+ L I+ A+ ++ ++D G + +
Sbjct: 16 RLLAILIGALTLWPALAQNLPPEVDAALARARVPRDAVSLLVMDAE-GKLPPRLSHRATV 74
Query: 50 PWNPASLTKLMTAYVVFS 67
P +PAS+ KL+T Y
Sbjct: 75 PMSPASVMKLVTTYAALD 92
>gi|320095486|ref|ZP_08027157.1| hypothetical protein HMPREF9005_1769 [Actinomyces sp. oral taxon
178 str. F0338]
gi|319977582|gb|EFW09254.1| hypothetical protein HMPREF9005_1769 [Actinomyces sp. oral taxon
178 str. F0338]
Length = 449
Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
++D TG + + PAS+TK +TA + L
Sbjct: 84 LVVDGTTGEELLDAAAGTAHMPASVTKTLTALTALTHLDP 123
>gi|61744055|gb|AAX55643.1| beta-lactamase A [Yersinia enterocolitica]
Length = 294
Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 36/263 (13%), Positives = 71/263 (26%), Gaps = 22/263 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYT-----------LLDTNTG-HVIA 43
+R+ L++ + + F + A +++T G ++
Sbjct: 6 LRRALLLAGITLPLVNFSLPTWAAAIPGSLDKQLAALEHSANGRLGIAMINTGNGTKILY 65
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
+ S K M A V + + +L I ++ + MT
Sbjct: 66 -RGA-RRFPFCSTFKFMLAAAVLGQSQSQPNLLNKHINYHESDLLSYAPITRKNLAHGMT 123
Query: 104 LDNALKLLIVKSANDIAVAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ I S N A + + L +F + + + L A
Sbjct: 124 VSELCAATIQYSDNTAANLLLKELGGLAAVNQFARSIGDQMFRLDRWEPDLNTALPNDPR 183
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF- 220
T A A ++ + D Q+ T A G KTG
Sbjct: 184 DTTTPAAMAASINKLVLGDALHPAQRSQLTAWLKGNTTGDATIRAGAPTDWIVGDKTGSG 243
Query: 221 TCASGFNIVASAIQGDQSLIAVI 243
+ +I ++ V+
Sbjct: 244 DYGTTNDIAVLWPTKGAPIVLVV 266
>gi|55167237|dbj|BAD67445.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
Length = 821
Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|168491624|ref|ZP_02715767.1| penicillin-binding protein 1b [Streptococcus pneumoniae CDC0288-04]
gi|38141959|dbj|BAD00782.1| penicillin-binding protein 1B [Streptococcus pneumoniae]
gi|183573983|gb|EDT94511.1| penicillin-binding protein 1b [Streptococcus pneumoniae CDC0288-04]
Length = 821
Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|311895900|dbj|BAJ28308.1| putative hydrolase [Kitasatospora setae KM-6054]
Length = 276
Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ + G ++ + P P AS+TKL++AY V ++E L P
Sbjct: 11 PVPHAAAAVVRGSDGALLGAHGPQDHLFPLASVTKLLSAYAVLVAVEEGVFELDDP 66
>gi|307705758|ref|ZP_07642603.1| penicillin-binding protein 1B [Streptococcus mitis SK597]
gi|307620676|gb|EFN99767.1| penicillin-binding protein 1B [Streptococcus mitis SK597]
Length = 815
Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|82569258|emb|CAJ43422.1| class A Beta-lactamase [Yersinia enterocolitica]
Length = 291
Score = 40.3 bits (92), Expect = 0.43, Method: Composition-based stats.
Identities = 36/263 (13%), Positives = 71/263 (26%), Gaps = 22/263 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-----YYT-----------LLDTNTG-HVIA 43
+R+ L++ + + F + A +++T G ++
Sbjct: 6 LRRALLLAGITLPLVNFSLPTWAAAIPGSLDKQLAALEHSANGRLGIAMINTGNGTKILY 65
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
+ S K M A V + + +L I ++ + MT
Sbjct: 66 -RGA-RRFPFCSTFKFMLAAAVLGQSQSQPNLLNKHINYHESDLLSYAPITRKNLAHGMT 123
Query: 104 LDNALKLLIVKSANDIAVAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ I S N A + + L +F + + + L A
Sbjct: 124 VSELCAATIQYSDNTAANLLLKELGGLAAVNQFARSIGDQMFRLDRWEPDLNTALPNDPR 183
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF- 220
T A A ++ + D Q+ T A G KTG
Sbjct: 184 DTTTPAAMAASINKLVLGDALHPAQRSQLTAWLKGNTTGDATIRAGAPTDWIVGDKTGSG 243
Query: 221 TCASGFNIVASAIQGDQSLIAVI 243
+ +I ++ V+
Sbjct: 244 DYGTTNDIAVLWPTKGAPIVLVV 266
>gi|139439565|ref|ZP_01772997.1| Hypothetical protein COLAER_02024 [Collinsella aerofaciens ATCC
25986]
gi|133775118|gb|EBA38938.1| Hypothetical protein COLAER_02024 [Collinsella aerofaciens ATCC
25986]
Length = 357
Score = 40.3 bits (92), Expect = 0.44, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 47/147 (31%), Gaps = 14/147 (9%)
Query: 30 YYTLLDTNT-----GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS- 83
Y LD T G V PD AS+ KL + + L IT++
Sbjct: 116 YAVALDPQTFASLDGEVAVA--PDARRVAASIIKLPILACALETVTAGELSLDEQITVTQ 173
Query: 84 KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSK 143
++ + + G + +D L +I +S N A + L + +N T
Sbjct: 174 QDIVGGSGNIQSRGAGVSYGIDELLHAMIAQSDNVAANLVIGRL------GMDTVNETCA 227
Query: 144 NLGLSATHFMNAHGVVQHGHYTTARDM 170
LGL+ T +
Sbjct: 228 ALGLTQTVLARLMMDTEAQAQGRENYT 254
>gi|182685034|ref|YP_001836781.1| penicillin-binding protein 1B [Streptococcus pneumoniae CGSP14]
gi|182630368|gb|ACB91316.1| penicillin-binding protein 1B [Streptococcus pneumoniae CGSP14]
Length = 825
Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 429 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 488
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 489 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 546
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 547 GYEIPEYGIESLPMGGGIEVTVAQH 571
>gi|14578573|gb|AAK52324.1| class A beta-lactamase precursor [Burkholderia pseudomallei]
Length = 295
Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 39/272 (14%), Positives = 81/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 11 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 69
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 70 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 129
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + +T + + + + + L + A + T
Sbjct: 130 AATLQYSDNTAANLLIALLGGPQTVTAYARSIGDATFRLDRRESELNTALPGDERDTTTP 189
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 190 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 249
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 250 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 281
>gi|192288797|ref|YP_001989402.1| beta-lactamase [Rhodopseudomonas palustris TIE-1]
gi|192282546|gb|ACE98926.1| Beta-lactamase [Rhodopseudomonas palustris TIE-1]
Length = 291
Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 35/214 (16%), Positives = 64/214 (29%), Gaps = 4/214 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+LDT +G +I + D + S K++ A +V + + K+ L ++ +K+
Sbjct: 50 VLDTASGRMI-GHRLDERFPMCSTFKVLAAGLVLARVDRKQEKLDRRVSYAKSNLVTYSP 108
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ MT+ + I S N A + + F + + + + L T
Sbjct: 109 ATEKHVEDGMTIAELCEAAITLSDNTAANLLLASFGGPAGLTAFARSLGDETTRLDRIET 168
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
A + L D Q+ A
Sbjct: 169 ELNEALPGDPRDTTSPRAMAQDLRALTLGDALSPASRAQLITWLKANTTGGTRLRAGVPP 228
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + LI +
Sbjct: 229 GWTVGDKTGTGSRGTANDIAVLWPPQRAPLIVTV 262
>gi|229085614|ref|ZP_04217846.1| Beta-lactamase [Bacillus cereus Rock3-44]
gi|228697694|gb|EEL50447.1| Beta-lactamase [Bacillus cereus Rock3-44]
Length = 250
Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 30/204 (14%), Positives = 54/204 (26%), Gaps = 10/204 (4%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNSTFK 97
G + + ASL KL ++E I++ S + +
Sbjct: 27 GAITYQCNEQLIHPAASLIKLPILSCAIEKIREGTLHPFELISVLSLEKAGGSGVVDSLH 86
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+ D ++ V I + + + M L + G
Sbjct: 87 TPTVTMQDLITLMITVSDNTATNWLINKLEMNHIQTHIDSMQLYGTKLQRYMMQTLKEQG 146
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++TTA D+ L + Q+ + Q + K G A K
Sbjct: 147 RD---NFTTAEDIVFLLKH-YENEKQFYNLLQNQQFTYKLCG-----RLEGMKGVATANK 197
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
TG + + IA
Sbjct: 198 TGELQTVTHDAARLIVNNKTVYIA 221
>gi|118473563|ref|YP_886995.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
gi|33188340|gb|AAP97895.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
gi|118174850|gb|ABK75746.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
Length = 293
Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 37/260 (14%), Positives = 75/260 (28%), Gaps = 20/260 (7%)
Query: 2 RQFLVIIAMAMLSNI---FPFLSIAE-----------TNKLPYYTLLDTNTGHVIAENYP 47
R+ ++I ++A+++ P S A N +D ++ +
Sbjct: 6 RRSVLIGSLAVMAAAGVRMPTASAAPVDDRIADLERRNNASIGIYAVDLDSNRT-VAHRA 64
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D + S K A + + + L + + A + G MTL
Sbjct: 65 DDSFAMCSTFKAYLAARILRGAERGELSLDDRVFVDPAALLSNSPITETHAGGEMTLAEL 124
Query: 108 LKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ + +S N A + + + + F + + + L T +A T
Sbjct: 125 CQAALQRSDNAAANLLLKQIGGPAEITAFARSIGDQRTRLDRWETELNSAVPGDPRDTST 184
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
A + D + E ++ A KTG
Sbjct: 185 PAALAGGFRAVLTGDVLAPPQRQLL--DEWMRANETSSLRAGLPDGWTSADKTGSGDYGS 242
Query: 226 FNIVASAI-QGDQSLIAVIL 244
N V A Q ++ ++
Sbjct: 243 TNDVGIAYGPQGQRILLALM 262
>gi|2565295|gb|AAB81957.1| extended spectrum beta-lactamase [Nocardia farcinica]
Length = 297
Score = 40.3 bits (92), Expect = 0.45, Method: Composition-based stats.
Identities = 35/213 (16%), Positives = 58/213 (27%), Gaps = 3/213 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT +G +A D + AS K + + + S+
Sbjct: 58 VDTTSGAEVAYR-ADERFGMASTFKGLACGALLREHPLSSGYFDQVVRYSREEVVSYSPV 116
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + + MT+ I S N I + F++ + + L T
Sbjct: 117 TETRVDTGMTVAELCHATITVSDNTAGNQILKLLGGPAGFTAFLRSLGDEVSRLDRWETE 176
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ T A A + D Q++ + A
Sbjct: 177 LNEVPPGEERDTTTPAAVAANYRALVLGDVLAEPERAQLRDWLVANTTGDQRIRAGVPAG 236
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
G KTG G N VA A I + L
Sbjct: 237 WTVGDKTGGGSHGGNNDVAVAWTETGDPIVIAL 269
>gi|282881915|ref|ZP_06290560.1| beta-lactamase [Peptoniphilus lacrimalis 315-B]
gi|281298190|gb|EFA90641.1| beta-lactamase [Peptoniphilus lacrimalis 315-B]
Length = 262
Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats.
Identities = 27/214 (12%), Positives = 63/214 (29%), Gaps = 4/214 (1%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST-MTL 104
D AS+ KL+ + + K K L T I + K ++
Sbjct: 38 NEDKKVRSASMIKLLIMAEIMNQSKNGKISLDTKIKVGKKDKVGGSGILKEFDCEHEFSI 97
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ L+I+ S N + + + + +N S +L +
Sbjct: 98 KELMTLMIIVSDNQATNILIDLVGMDNINLMGKRLNLKSASLQRKMMDIKALE--KGRDN 155
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
Y +A+D+ ++ +I ++ + + KTG
Sbjct: 156 YISAKDVKVILEKIYRKTLVDEKSSELMLDILLRQHERQRLGRFLDEEVKIASKTGDLDK 215
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKVSA 257
+ ++ ++ V++ N + +
Sbjct: 216 LENDGGIFFLENKNYILVVLIDDAVTNAMAQETI 249
>gi|2497582|sp|P96465|BLA2_STEMA RecName: Full=Beta-lactamase L2; AltName: Full=Penicillinase;
Flags: Precursor
gi|1870143|emb|CAA69869.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 303
Score = 40.3 bits (92), Expect = 0.46, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Query: 11 AMLSNIFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
A L+ F ++ + + + LLDT +G I + D + S K + A V S
Sbjct: 39 AALTAATDFAALEKAVRGRFGVTLLDTASGRRI-GHRQDERFPMCSTFKSVLAATVLSQA 97
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+ + A+L T + + + G MT+ + + I+ S N A +
Sbjct: 98 ERQPALLDTRVPVRDADLLSHAPVTRRHAGKDMTVRDLCRATIITSDNTAANLLF 152
>gi|194397279|ref|YP_002038687.1| penicillin-binding protein 1B [Streptococcus pneumoniae G54]
gi|194356946|gb|ACF55394.1| penicillin-binding protein 1B [Streptococcus pneumoniae G54]
Length = 821
Score = 40.0 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYXIPEYGIESLPMGGGIEVTVAQH 567
>gi|219920977|emb|CAQ76666.1| beta-lactamase [Klebsiella oxytoca]
Length = 273
Score = 40.0 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 39/258 (15%), Positives = 72/258 (27%), Gaps = 18/258 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAENYPD 48
+ L+ A+ +L + A+ + L++ + + D
Sbjct: 8 KTALMAAAVPLLLASGSLWASADAIQQKLADLEKRSGGRLGVALINTADDSQTLY--RGD 65
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M A V + ++ + I K+ + S MTL
Sbjct: 66 ERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITEKHLQSGMTLAELS 125
Query: 109 KLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N + L EK F Q + + + L + +A + T
Sbjct: 126 AAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALNSAIPGDKRDTTTP 185
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
L + Q+ + A A G KTG
Sbjct: 186 LAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWAVGDKTGAGDYGTT 245
Query: 227 NIVASAIQGDQ-SLIAVI 243
N +A + L+ V
Sbjct: 246 NDIAVIWPENHAPLVLVT 263
>gi|167742293|ref|ZP_02415067.1| class A beta-lactamase [Burkholderia pseudomallei 14]
Length = 314
Score = 40.0 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 30 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 88
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 89 ERFPFCSTSKMMLCAAVLACSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 148
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + + + + + L A + T
Sbjct: 149 AATLQYSDNTAANLLIALLGGLQAVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 208
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 209 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 268
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 269 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 300
>gi|159029388|emb|CAO90764.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 306
Score = 40.0 bits (91), Expect = 0.47, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA----MLTTPITISKNASEY 89
+D T VI + D + PAS TKL T + + L + I+ S
Sbjct: 97 IDRQT--VIYSHNADRYFIPASNTKLFTTAAALQAMNPETTIQKKSLRDWVNITNQRSNN 154
Query: 90 PP 91
Sbjct: 155 FY 156
>gi|54307804|ref|YP_128824.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Photobacterium
profundum SS9]
gi|46912227|emb|CAG19022.1| hypothetical D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Photobacterium profundum SS9]
Length = 472
Score = 40.0 bits (91), Expect = 0.48, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
N ++ ++D T V+ + PAS K++TA
Sbjct: 24 AFNPQAAINKLPNGHDLALMIVDPATNQVLYSQRTEQLQAPASTQKVITALAA 76
>gi|13399765|pdb|1G68|A Chain A, Pse-4 Carbenicillinase, Wild Type
Length = 271
Score = 40.0 bits (91), Expect = 0.48, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 66/212 (31%), Gaps = 3/212 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+LDT G + + + S K + + ++ K + + I K
Sbjct: 27 VLDTQNGE-YWDYNGNQRFPLTSTFKTIACAKLLYDAEQGKVNPNSTVEIKKADLVTYSP 85
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSAT 150
+ G +TLD+A + S N A I ++ K F++ + + L
Sbjct: 86 VIEKQVGQAITLDDACFATMTTSDNTAANIILSAVGGPKGVTDFLRQIGDKETRLDRIEP 145
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T + L+ + M+ +++ + + N +V
Sbjct: 146 DLNEGKLGDLRDTTTPKAIASTLNKFLFGSALSEMNQKKLESWMVNNQVTGNLLRSVLPA 205
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
++G +I A Q+ I V
Sbjct: 206 GWNIADRSGAGGFGARSITAVVWSEHQAPIIV 237
>gi|322689832|ref|YP_004209566.1| hypothetical protein BLIF_1651 [Bifidobacterium longum subsp.
infantis 157F]
gi|320461168|dbj|BAJ71788.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 496
Score = 40.0 bits (91), Expect = 0.48, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
S + L A+ +++ G V AE+ + P PAS K +TA
Sbjct: 92 ASALVNELLSAQGVGNDASVIIEDAQGTVAAEHESNTPREPASTLKTLTALAA 144
>gi|23466227|ref|NP_696830.1| hypothetical protein BL1679 [Bifidobacterium longum NCC2705]
gi|23326972|gb|AAN25466.1| hypothetical secreted protein with D-Ala-D-Ala carboxypeptidase 3
(S13) domain [Bifidobacterium longum NCC2705]
Length = 496
Score = 40.0 bits (91), Expect = 0.48, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
S + L A+ +++ G V AE+ + P PAS K +TA
Sbjct: 92 ASALVNELLSAQGVGNDASVIIEDAQGTVAAEHESNTPREPASTLKTLTALAA 144
>gi|325305941|gb|ADZ11075.1| beta-lactamase SHV [Klebsiella pneumoniae]
Length = 140
Score = 40.0 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 20/136 (14%), Positives = 35/136 (25%), Gaps = 2/136 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D ++G + D + S K++ V + + L I +
Sbjct: 5 MDLDSGRTLTAWCSDERFPMMSTFKVVLCGAVLARVDAGDEQLERKIHYRQQDLVDYSPV 64
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATH 151
S MT+ I S N + F++ + L T
Sbjct: 65 SEKHLADGMTVGELCAAAITMSENSATNLLLATVGGPAGLTAFLRQIGENVTRLDRWETE 124
Query: 152 FMNAHGVVQHGHYTTA 167
A T A
Sbjct: 125 LNEALPGDSRDTTTPA 140
>gi|317033957|ref|XP_001395702.2| transesterase [Aspergillus niger CBS 513.88]
Length = 407
Score = 40.0 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
P AS+TKLMT ++ L
Sbjct: 64 PQSVMAFASMTKLMTCIAALQLVERGTISLDD 95
>gi|255534168|ref|YP_003094540.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Pedobacter heparinus
DSM 2366]
gi|255347152|gb|ACU06478.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Pedobacter heparinus
DSM 2366]
Length = 450
Score = 40.0 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 21 SIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ + K Y L D T ++ E + D + PAS TKL T Y L + L
Sbjct: 48 ADSPVLKKYYAGFALYDMATARMLFERHADQYFTPASNTKLFTFYAGLKMLPDSIPSL 105
>gi|134080426|emb|CAK41175.1| unnamed protein product [Aspergillus niger]
Length = 380
Score = 40.0 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
P AS+TKLMT ++ L
Sbjct: 64 PQSVMAFASMTKLMTCIAALQLVERGTISLDD 95
>gi|20148751|gb|AAM10778.1| beta-lactamase precursor 1m [Burkholderia pseudomallei]
Length = 295
Score = 40.0 bits (91), Expect = 0.49, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 80/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 11 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 69
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 70 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 129
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + + + + + L + A + T
Sbjct: 130 AATLQYSDNTAANLLIALLGGPQAVTAYARSIGDATFRLDRRESELNTALPGDERDTTTP 189
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 190 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 249
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 250 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 281
>gi|317129059|ref|YP_004095341.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacillus cellulosilyticus DSM 2522]
gi|315474007|gb|ADU30610.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacillus cellulosilyticus DSM 2522]
Length = 494
Score = 40.0 bits (91), Expect = 0.50, Method: Composition-based stats.
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
TG ++ E + PAS K++T+
Sbjct: 63 FQTGELLYEQNVNQLLTPASNMKILTSIAALE 94
>gi|87311341|ref|ZP_01093462.1| Serine-type D-Ala-D-Ala carboxypeptidase [Blastopirellula marina
DSM 3645]
gi|87285921|gb|EAQ77834.1| Serine-type D-Ala-D-Ala carboxypeptidase [Blastopirellula marina
DSM 3645]
Length = 366
Score = 40.0 bits (91), Expect = 0.50, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ D TG D + S TK MT V+ ++ K L
Sbjct: 45 VADLKTGQ---SMQTDMAFRIGSNTKTMTGVVILQLVQAGKIKLDDK 88
>gi|289673757|ref|ZP_06494647.1| D-alanyl-D-alanine endopeptidase [Pseudomonas syringae pv. syringae
FF5]
Length = 136
Score = 40.0 bits (91), Expect = 0.50, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 189 QIKGLEIKGKKYP----NTNWAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ K + + Y NT+ V KTGFT +G +V ++ + VI
Sbjct: 25 EQKTVTFRKPTYTLGFSNTDHLVRKDNWDIKLTKTGFTNQAGHCLVLLTSMANRPVSVVI 84
Query: 244 LGALDRNTRNKVSASLLSM 262
L A + T ++ +
Sbjct: 85 LDAFGKYTHFADASRIRKW 103
>gi|330997248|ref|ZP_08321101.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Paraprevotella xylaniphila YIT 11841]
gi|329571043|gb|EGG52750.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Paraprevotella xylaniphila YIT 11841]
Length = 404
Score = 40.0 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D ++ PAS KL+TA S
Sbjct: 66 VYDLTDDTLLYAYQAKQRMRPASTEKLVTAVTALSE 101
>gi|317474687|ref|ZP_07933961.1| D-Ala-D-Ala carboxypeptidase 3 family protein [Bacteroides
eggerthii 1_2_48FAA]
gi|316909368|gb|EFV31048.1| D-Ala-D-Ala carboxypeptidase 3 family protein [Bacteroides
eggerthii 1_2_48FAA]
Length = 476
Score = 40.0 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D + + D PAS KL+T
Sbjct: 54 VYDLTANEALYDYQADKLSRPASTMKLLTTITAL 87
>gi|218131692|ref|ZP_03460496.1| hypothetical protein BACEGG_03313 [Bacteroides eggerthii DSM
20697]
gi|217985995|gb|EEC52334.1| hypothetical protein BACEGG_03313 [Bacteroides eggerthii DSM
20697]
Length = 476
Score = 40.0 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D + + D PAS KL+T
Sbjct: 54 VYDLTANEALYDYQADKLSRPASTMKLLTTITAL 87
>gi|191639712|ref|YP_001988878.1| Beta-lactamase [Lactobacillus casei BL23]
gi|190714014|emb|CAQ68020.1| Beta-lactamase [Lactobacillus casei BL23]
gi|327383826|gb|AEA55302.1| Possible beta-lactamase class A [Lactobacillus casei LC2W]
gi|327387005|gb|AEA58479.1| Possible beta-lactamase class A [Lactobacillus casei BD-II]
Length = 261
Score = 40.0 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 36/216 (16%), Positives = 63/216 (29%), Gaps = 7/216 (3%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ L+ +T HV+ D P+ ASL KL A V + + L ++ S
Sbjct: 20 KHALLV-ADTRHVLFGAQVDQPFPAASLIKLGIAAFVKEKAADDPSQL--ERQVTLPESV 76
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
F + + L L++ S N A+ + + + L
Sbjct: 77 GGAGILRFMSPQAWRVRDLLTLMLTVSDNLATNALLTTYGL--PTIAAWLTRHYPGVQLR 134
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+ + A + + P Q + K +
Sbjct: 135 RPLMQSTFDGDNMITASAAWQLLRALLTSDGNEPAADICAQALRHQQNRTKLL-LAPTME 193
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
F+G KTG + A + L AV+L
Sbjct: 194 NFVGWLAGKTGELPHCEHDAACFAA-EGERLYAVVL 228
>gi|223937348|ref|ZP_03629253.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[bacterium Ellin514]
gi|223893899|gb|EEF60355.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[bacterium Ellin514]
Length = 802
Score = 40.0 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 18/77 (23%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE------TNKLPYYTL----------LDTNTGHVIAE 44
M++ + + L++ + D T +
Sbjct: 1 MKKVATLFVLLTLASFSARSTAQPIPDRIDAILARAAVATNIWSVFIQSADGTTTD--YQ 58
Query: 45 NYPDHPWNPASLTKLMT 61
PD PAS TKL T
Sbjct: 59 RNPDTGLAPASNTKLYT 75
>gi|157835243|pdb|2JCH|A Chain A, Structural And Mechanistic Basis Of Penicillin Binding
Protein Inhibition By Lactivicins
Length = 461
Score = 40.0 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 97 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 156
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 157 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 214
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 215 GYEIPEYGIESLPMGGGIEVTVAQH 239
>gi|311745180|ref|ZP_07718965.1| beta-lactamase [Algoriphagus sp. PR1]
gi|126577702|gb|EAZ81922.1| beta-lactamase [Algoriphagus sp. PR1]
Length = 438
Score = 40.0 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 13/55 (23%)
Query: 38 TGHVIAEN-------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
G V+ D + S+TK+ T +V ++E K L
Sbjct: 49 NGEVLYARSLGFKDIEEGVKLEEDTQFRVGSITKMFTTVLVLQAVEEGKLKLDQK 103
>gi|307710187|ref|ZP_07646631.1| penicillin-binding protein 1B [Streptococcus mitis SK564]
gi|307619167|gb|EFN98299.1| penicillin-binding protein 1B [Streptococcus mitis SK564]
Length = 821
Score = 40.0 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 425 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 484
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 485 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 542
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 543 GYEIPEYGIESLPMGGGIEVTVAQH 567
>gi|227539858|ref|ZP_03969907.1| beta-lactamase [Sphingobacterium spiritivorum ATCC 33300]
gi|227240136|gb|EEI90151.1| beta-lactamase [Sphingobacterium spiritivorum ATCC 33300]
Length = 366
Score = 40.0 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 26/210 (12%), Positives = 55/210 (26%), Gaps = 19/210 (9%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ +N ASLTK +TA V + K L P+ + E
Sbjct: 87 ENTLFNVASLTKPVTAIVALKLVSLGKWNLDEPLYMYWTDPEI--------ANDPRHQQL 138
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+L++ KK + +K + + + + +
Sbjct: 139 TTRLVLSHQTGFA----NWRWENENKKLGFQFDPGTKYQYSGEGYEYLRKALEKKFNKSL 194
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
+ L +R + + Y N ++ +
Sbjct: 195 QQLADELVFRPIKMPDTQYIWNKDTDSTRLAVGYDN---KGNSYPVVK----NREPNAAD 247
Query: 227 NIVASAIQGDQSLIAVILGALDRNTRNKVS 256
+++ S + LI+V+ G
Sbjct: 248 DLMTSIEDYGKFLISVMNGEGLSKKVFDEM 277
>gi|163841948|ref|YP_001626353.1| D-alanyl-meso-diaminopimelate endopeptidase [Renibacterium
salmoninarum ATCC 33209]
gi|162955424|gb|ABY24939.1| D-alanyl-meso-diaminopimelate endopeptidase [Renibacterium
salmoninarum ATCC 33209]
Length = 475
Score = 40.0 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+LD +G V+ + + P PAS KL+TA V
Sbjct: 94 VLDAASGAVLFDRKSEAPSIPASNLKLLTAAAVLKN 129
>gi|152975953|ref|YP_001375470.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152024705|gb|ABS22475.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cytotoxicus NVH
391-98]
Length = 369
Score = 40.0 bits (91), Expect = 0.51, Method: Composition-based stats.
Identities = 20/174 (11%), Positives = 42/174 (24%), Gaps = 4/174 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
L+ V+ PD AS KL+ A + E K + +S +
Sbjct: 51 SALLI-KRNDKVVYSVNPDVVLPVASTMKLIVALEFTKQVTEGKIDPNS--YVSIHDVNR 107
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+T + + +A + K L
Sbjct: 108 YYVPNTDGGAQERWQKYLQRKGKIDENAVSLEEVARGMMKFSSNANAEYLMEKLGLDNVN 167
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ + H + + + + + K E+ ++Y
Sbjct: 168 QNLK-KLALPSHEPLFPIVSSLYIPGYLHKELHVPKYQIEKKLKEMSQEQYRQY 220
>gi|148657765|ref|YP_001277970.1| beta-lactamase [Roseiflexus sp. RS-1]
gi|148569875|gb|ABQ92020.1| beta-lactamase [Roseiflexus sp. RS-1]
Length = 357
Score = 40.0 bits (91), Expect = 0.52, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ D +G ++ PD P+ AS+TK+ TA ++ ++++ L
Sbjct: 40 AAGVADPGSGAMM---QPDTPYFIASITKMYTAAIIMQLYEQQRLDL 83
>gi|327356868|gb|EGE85725.1| beta-lactamase [Ajellomyces dermatitidis ATCC 18188]
Length = 404
Score = 40.0 bits (91), Expect = 0.52, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 14/54 (25%)
Query: 39 GHVIAENY--------------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + D P+ AS+TK+ TA V ++ L
Sbjct: 33 GKVLYSSSHGNTKVDGSGEAVTEDTPFYTASMTKVFTAVAVMVAVERGLITLDD 86
>gi|261191584|ref|XP_002622200.1| beta-lactamase [Ajellomyces dermatitidis SLH14081]
gi|239589966|gb|EEQ72609.1| beta-lactamase [Ajellomyces dermatitidis SLH14081]
gi|239612626|gb|EEQ89613.1| beta-lactamase [Ajellomyces dermatitidis ER-3]
Length = 411
Score = 40.0 bits (91), Expect = 0.52, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 14/54 (25%)
Query: 39 GHVIAENY--------------PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + D P+ AS+TK+ TA V ++ L
Sbjct: 33 GKVLYSSSHGNTKVDGSGEAVTEDTPFYTASMTKVFTAVAVMVAVERGLITLDD 86
>gi|310779226|ref|YP_003967559.1| NLP/P60 protein [Ilyobacter polytropus DSM 2926]
gi|309748549|gb|ADO83211.1| NLP/P60 protein [Ilyobacter polytropus DSM 2926]
Length = 260
Score = 40.0 bits (91), Expect = 0.53, Method: Composition-based stats.
Identities = 23/208 (11%), Positives = 56/208 (26%), Gaps = 2/208 (0%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
+ + V+ + + + ++ K+M ++E L I I + Y
Sbjct: 22 NLSDNKVLVSHRCNKVFRSPTVMKIMVMVEALKEVEEGHNTLDDRIEIKETGISYLSLIR 81
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
S D + ++ I + + + M + F
Sbjct: 82 DLSISSYTLKDLIILMMTANDYTAINTLLNLFGLEKINNRIDKMGLLDTKVQRKMLDFYA 141
Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214
+ T+ RDM+ + RI +E+ +
Sbjct: 142 IE--KGKDNVTSIRDMSNILERIYNRSVFKYREISDFSVEMLKYQRVGRGVRNYIPEWES 199
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAV 242
++G +I ++ ++ V
Sbjct: 200 TYRSGEVGDFYHDIGIVFLENAHYILGV 227
>gi|327388834|gb|EGE87182.1| penicillin-binding protein 1b [Streptococcus pneumoniae GA04375]
Length = 751
Score = 40.0 bits (91), Expect = 0.53, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 355 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 414
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 415 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYC--TYRMLREKGVDVKGYMEKM 472
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 473 GYEIPEYGIESLPMGGGIEVTVAQH 497
>gi|298483268|ref|ZP_07001447.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. D22]
gi|298270585|gb|EFI12167.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. D22]
Length = 468
Score = 40.0 bits (91), Expect = 0.53, Method: Composition-based stats.
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIF----------PFLSIAETNKLPYYT-LLDTNTGHVIAENYPDH 49
M++ L+++ +++ + + D + +
Sbjct: 1 MKKSLLLVTLSVCLLPLWGQQNFSRIDSLIKKMLPEASEVGISVYDLTAKKSLYNYRAEK 60
Query: 50 PWNPASLTKLMTAYVVF 66
PAS KL+TA
Sbjct: 61 LSRPASTMKLLTAITAL 77
>gi|293371180|ref|ZP_06617716.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides ovatus SD CMC 3f]
gi|292633741|gb|EFF52294.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides ovatus SD CMC 3f]
Length = 468
Score = 40.0 bits (91), Expect = 0.54, Method: Composition-based stats.
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIF----------PFLSIAETNKLPYYT-LLDTNTGHVIAENYPDH 49
M++ L+++ +++ + + D + +
Sbjct: 1 MKKSLLLVTLSVCLLPLWGQQNFSRIDSLIKKMLPEASEVGISVYDLTAKKSLYNYRAEK 60
Query: 50 PWNPASLTKLMTAYVVF 66
PAS KL+TA
Sbjct: 61 LSRPASTMKLLTAITAL 77
>gi|194016709|ref|ZP_03055322.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacillus pumilus ATCC 7061]
gi|194011315|gb|EDW20884.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacillus pumilus ATCC 7061]
Length = 494
Score = 40.0 bits (91), Expect = 0.54, Method: Composition-based stats.
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 28/108 (25%)
Query: 1 MRQFLVIIAM---AMLSNIFPFLSIAETNKL---------------------PYYT---- 32
M++F I+ + + PF + +
Sbjct: 1 MKRFSQILFLHICILSILFLPFSAKDDQLTARDDSLPWVTALDEFIRTAPGLEGAISGIS 60
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+ DT+ ++ E+ D PAS KL+T+ + L E T
Sbjct: 61 VRDTSDSSLLYEHQADIRLTPASNMKLLTSAIALDILGETHTFPTDIW 108
>gi|167914578|ref|ZP_02501669.1| class A beta-lactamase [Burkholderia pseudomallei 112]
gi|217418871|ref|ZP_03450378.1| class A beta-lactamase [Burkholderia pseudomallei 576]
gi|217398175|gb|EEC38190.1| class A beta-lactamase [Burkholderia pseudomallei 576]
Length = 314
Score = 40.0 bits (91), Expect = 0.54, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 30 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 88
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 89 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 148
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + + + + + L A + T
Sbjct: 149 AATLQYSDNTAANLLIALLGGLQAVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 208
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 209 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 268
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 269 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 300
>gi|17066640|gb|AAL35335.1|AF441238_1 beta-lactamase precursor 1c [Burkholderia pseudomallei]
Length = 295
Score = 40.0 bits (91), Expect = 0.54, Method: Composition-based stats.
Identities = 38/272 (13%), Positives = 79/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 11 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 69
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 70 ERFPFCSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 129
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + + + + + L A + T
Sbjct: 130 AATLQYSDNTAANLLIALLGGLQAVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 189
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 190 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 249
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 250 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 281
>gi|227513578|ref|ZP_03943627.1| class A beta-lactamase [Lactobacillus buchneri ATCC 11577]
gi|227083451|gb|EEI18763.1| class A beta-lactamase [Lactobacillus buchneri ATCC 11577]
Length = 250
Score = 40.0 bits (91), Expect = 0.54, Method: Composition-based stats.
Identities = 29/217 (13%), Positives = 54/217 (24%), Gaps = 14/217 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
+ + ASL KL V L I + ++ L
Sbjct: 35 NANKAFRSASLIKLAILNDVLDS----HFDLDKEIHVRRDKLVGGAGVLQLLSERIFQLK 90
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ L L+I S N + + + + H+N +G T
Sbjct: 91 DLLALMISVSDNSATNLVIDLI------GMDHVNQYLSKMGFYKTRLNRYLMDTNALENG 144
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD-GMKTGFTCAS 224
+ + H + +Y T G KTG
Sbjct: 145 KDNYTTPAESQRLLEMAIANHPMTKTWFLNQQFRYKLPGDFDETGNGIQVYNKTGEGYQI 204
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
++ +I++ L +R + L +
Sbjct: 205 DHDVAEFVY--GNKVISIALLTFGSRSRMN-TIRLFN 238
>gi|118467441|ref|YP_890415.1| beta-lactamase related protein [Mycobacterium smegmatis str. MC2
155]
gi|118168728|gb|ABK69624.1| beta-lactamase related protein [Mycobacterium smegmatis str. MC2
155]
Length = 272
Score = 40.0 bits (91), Expect = 0.54, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 22/235 (9%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+ D NTG ++ E+ P+ AS+ K+ V + + +T +
Sbjct: 14 DMAAWSVRITDLNTGEILWEHDPERVLKTASVGKIFLLAEVARRFENRTLDPAEIVTAAP 73
Query: 85 NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN 144
+G + +D+ L+ S N + L + + +K+
Sbjct: 74 EDVVADSGILYLLQGQDLRIDDLCLLIGAVSDNMATNILLRRL------GLDEVQRATKD 127
Query: 145 LGLSATHFMNAHGVVQHGHY-------TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKG 197
LG +A+ + + + A ++ D Q++
Sbjct: 128 LGFTASGLRDRVRLNRSQDDPLTLSTGNAAELCEFVARLHSGDIHGAEVSRQVRTWLGVN 187
Query: 198 KKYPNTNWAVGTFL--------GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
A G A KTG T + + A GD+S+ +L
Sbjct: 188 TDLSMVARAFGLDPLAHTEPDRFALWNKTG-TISDARIDIGCATHGDRSVGYAVL 241
>gi|323691502|ref|ZP_08105773.1| beta-lactamase [Clostridium symbiosum WAL-14673]
gi|323504475|gb|EGB20266.1| beta-lactamase [Clostridium symbiosum WAL-14673]
Length = 262
Score = 40.0 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 26/207 (12%), Positives = 54/207 (26%), Gaps = 11/207 (5%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-YPPSNSTFKKGST 101
D AS+ KL+ + + + L I I++ + G
Sbjct: 35 FSIDGDRRVPSASMIKLVIMAELMRRVCAGELSLEEKIKITQEMRTGGDGVLKELEPGHE 94
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+L L L+I+ S N+ + + L + +N + LGL +
Sbjct: 95 FSLREILTLMIIVSDNEATNILIQML------GMDRINRMAAELGLKEAVLGRKMMDSEA 148
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIK----GLEIKGKKYPNTNWAVGTFLGADGMK 217
+ + K L+I ++ + + +
Sbjct: 149 KKQGRDNFICADDIMLILKKIYEGSCVDRKASALMLDILKRQQQSGRLQLYLPEDVEVAH 208
Query: 218 TGFTCASGFNIVASAIQGDQSLIAVIL 244
N + I +L
Sbjct: 209 KCGDLDFLENDGGIILLPGHPYILAVL 235
>gi|307710958|ref|ZP_07647381.1| penicillin-binding protein [Streptococcus mitis SK321]
gi|307617198|gb|EFN96375.1| penicillin-binding protein [Streptococcus mitis SK321]
Length = 823
Score = 40.0 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG V+ + D +PAS TK + AY + A + +
Sbjct: 426 VLMDNKTGAVLGFVGGRNYQTNQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSASILS 485
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 486 NYPTKFSNGNPIMYVNSPGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 543
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 544 GYEIPEYGIESLPMGGGIEVTVAQH 568
>gi|164519444|pdb|2JCI|A Chain A, Structural Insights Into The Catalytic Mechanism And The
Role Of Streptococcus Pneumoniae Pbp1b
Length = 469
Score = 40.0 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 104 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 163
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 164 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 221
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 222 GYEIPEYGIESLPMGGGIEVTVAQH 246
>gi|110591396|pdb|2FFF|B Chain B, Open Form Of A Class A Transpeptidase Domain
Length = 453
Score = 40.0 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 89 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 148
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 149 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 206
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 207 GYEIPEYGIESLPMGGGIEVTVAQH 231
>gi|269929322|ref|YP_003321643.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
gi|269788679|gb|ACZ40821.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
Length = 269
Score = 40.0 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 37/216 (17%), Positives = 70/216 (32%), Gaps = 14/216 (6%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN-ASEYPPSN 93
D TG + E P+ + AS+ K+ +E L + + +
Sbjct: 28 DLTTGERL-EWSPETQFLAASIIKIPILVEGLRQAEEGTVRLDQMVPVPDDAKVGGFGIL 86
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
++++L + L L+I+ S N + L V+ +N T +LGL+ T
Sbjct: 87 KELTSVTSISLLDLLTLMIIVSDNTATNLCIDVL------GVESINRTIASLGLTGTQLQ 140
Query: 154 NAHGVVQH-----GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+ ++TT D+A L I T + + ++ +
Sbjct: 141 RKMMDYEARDRGLENFTTPADVARLLRLIATRQILTPEACDLALDIMARQQVRDRLPLYL 200
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KTG + + +I V L
Sbjct: 201 PDDMRVAHKTGELSGVRHDAGVIFFESG-PVIVVAL 235
>gi|115018|sp|P28018|BLA1_BACMY RecName: Full=Beta-lactamase 1; AltName: Full=Beta-lactamase I;
AltName: Full=Penicillinase; Flags: Precursor
gi|580787|emb|CAA44161.1| beta-lactamase [Bacillus mycoides]
Length = 306
Score = 40.0 bits (91), Expect = 0.55, Method: Composition-based stats.
Identities = 32/225 (14%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I+ + + + AS K + A V+ L I +K
Sbjct: 69 IDTGTNQTISYRH-NERFAFASTYKALAAGVLLQQNSID--TLNEVIKFTKEDLVDYSPV 125
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N K +K ++ + + T
Sbjct: 126 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFHKIGGPKGYEKALRQIGDRVTMSDRFETE 185
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T + L + + A
Sbjct: 186 LNEAIPGDIRDTSTAKAIASNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 245
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 246 WIVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 290
>gi|329948197|ref|ZP_08295069.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinomyces sp. oral taxon 170 str. F0386]
gi|328522930|gb|EGF50035.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinomyces sp. oral taxon 170 str. F0386]
Length = 470
Score = 40.0 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 10 MAMLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A+ S + S A +++D TG + + + PAS KL+TA+ S
Sbjct: 72 AALTSYVQAVASDAALAGGGVTASVVDVATGEELLDQHAATGVTPASTNKLLTAWAALSS 131
Query: 69 LKEKK 73
+
Sbjct: 132 MGPGH 136
>gi|254369683|ref|ZP_04985693.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
subsp. holarctica FSC022]
gi|157122642|gb|EDO66771.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
subsp. holarctica FSC022]
Length = 464
Score = 40.0 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 27 KLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++D+ VI D + PAS TKL+T
Sbjct: 45 SAQIAVKIIDSEKNTVILSKNADKNFIPASNTKLLTGI 82
>gi|134302386|ref|YP_001122355.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Francisella tularensis subsp. tularensis WY96-3418]
gi|134050163|gb|ABO47234.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Francisella tularensis subsp. tularensis WY96-3418]
Length = 464
Score = 40.0 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 27 KLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++D+ VI D + PAS TKL+T
Sbjct: 45 SAQIAVKIIDSEKNTVILSKNADKNFIPASNTKLLTGI 82
>gi|294813957|ref|ZP_06772600.1| alkaline D-peptidase [Streptomyces clavuligerus ATCC 27064]
gi|326442367|ref|ZP_08217101.1| peptidase [Streptomyces clavuligerus ATCC 27064]
gi|294326556|gb|EFG08199.1| alkaline D-peptidase [Streptomyces clavuligerus ATCC 27064]
Length = 412
Score = 40.0 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ D TG + S+TK +TA VV + E + L
Sbjct: 91 AAGVADLRTGE---RRGHHDRFRIGSVTKSLTAAVVLTLAAEGRLDLDDT 137
>gi|254389951|ref|ZP_05005173.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
gi|197703660|gb|EDY49472.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces clavuligerus ATCC
27064]
Length = 386
Score = 40.0 bits (91), Expect = 0.56, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ D TG + S+TK +TA VV + E + L
Sbjct: 65 AAGVADLRTGE---RRGHHDRFRIGSVTKSLTAAVVLTLAAEGRLDLDDT 111
>gi|227524722|ref|ZP_03954771.1| beta-lactamase class A [Lactobacillus hilgardii ATCC 8290]
gi|227088206|gb|EEI23518.1| beta-lactamase class A [Lactobacillus hilgardii ATCC 8290]
Length = 250
Score = 40.0 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 28/217 (12%), Positives = 54/217 (24%), Gaps = 14/217 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
+ + ASL KL V L + + ++ L
Sbjct: 35 NANKAFRSASLIKLAILNDVLDS----HFDLDKEVHVRRDKLVGGAGVLQLLSERIFQLK 90
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ L L+I S N + + + + H+N +G T
Sbjct: 91 DLLALMISVSDNSATNLVIDLI------GMDHVNQYLSKMGFYKTRLNRYLMDTNALENG 144
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD-GMKTGFTCAS 224
+ + H + +Y T G KTG
Sbjct: 145 KDNYTTPAESQRLLEMAIANHPMTKTWFLNQQFRYKLPGDFDETGNGIQVYNKTGEGYQI 204
Query: 225 GFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
++ +I++ L +R + L +
Sbjct: 205 DHDVAEFVY--GNKVISIALLTFGSRSRMN-TIRLFN 238
>gi|212692426|ref|ZP_03300554.1| hypothetical protein BACDOR_01922 [Bacteroides dorei DSM 17855]
gi|237711380|ref|ZP_04541861.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|212665005|gb|EEB25577.1| hypothetical protein BACDOR_01922 [Bacteroides dorei DSM 17855]
gi|229454075|gb|EEO59796.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 466
Score = 40.0 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL-----------PYYTLLDTNTGHVIAENYPDH 49
M++ L + + + +++ + D G + D
Sbjct: 1 MKRVLFFFLLILSIHFINAQPLSQRLDALLHEEVLKTSEVGIAVFDLTAGESVYRYQDDK 60
Query: 50 PWNPASLTKLMTAYVVF 66
+ PAS+ K++T+
Sbjct: 61 LYRPASVEKIITSVTAL 77
>gi|115315185|ref|YP_763908.1| peptidase [Francisella tularensis subsp. holarctica OSU18]
gi|290954548|ref|ZP_06559169.1| peptidase [Francisella tularensis subsp. holarctica URFT1]
gi|295312010|ref|ZP_06802827.1| peptidase [Francisella tularensis subsp. holarctica URFT1]
gi|115130084|gb|ABI83271.1| possible S13 family peptidase [Francisella tularensis subsp.
holarctica OSU18]
Length = 464
Score = 40.0 bits (91), Expect = 0.57, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 27 KLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++D+ VI D + PAS TKL+T
Sbjct: 45 SAQIAVKIIDSEKNTVILSKNADKNFIPASNTKLLTGI 82
>gi|237726157|ref|ZP_04556638.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229435965|gb|EEO46042.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 466
Score = 40.0 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL-----------PYYTLLDTNTGHVIAENYPDH 49
M++ L + + + +++ + D G + D
Sbjct: 1 MKRVLFFFLLILSIHFINAQPLSQRLDALLHEEVLKTSEVGIAVFDLTAGESVYRYQDDK 60
Query: 50 PWNPASLTKLMTAYVVF 66
+ PAS+ K++T+
Sbjct: 61 LYRPASVEKIITSVTAL 77
>gi|167840682|ref|ZP_02467366.1| beta-lactamase precursor [Burkholderia thailandensis MSMB43]
Length = 269
Score = 40.0 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 43/156 (27%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + A+T D TG + D PAS K
Sbjct: 1 MKIRHALSSALVLLGCVAAPAHAKTLCTAIA---DATTGKFLL-KDGDCSRRATPASTFK 56
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ ++ + + + + +
Sbjct: 57 IAMSLMGYDAGFLR--NEHEPVLPYRDGYVDWGGAAWKQPTDPTRWLKYSVVWYSQQITH 114
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ A +A+ + KN GL
Sbjct: 115 HLGAQRVAQYAKAFGYGNADLSGDPGKNNGLDRAWI 150
>gi|543893|sp|Q06316|BLAC_NOCLA RecName: Full=Beta-lactamase; AltName: Full=Penicillinase; Flags:
Precursor
gi|581412|emb|CAA78373.1| cmcBla [Amycolatopsis lactamdurans]
Length = 302
Score = 40.0 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 30/214 (14%), Positives = 61/214 (28%), Gaps = 6/214 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT +G +A D + AS K + A V ++ L + SK+
Sbjct: 65 VDTGSGESVAFR-ADERFAFASTFKALAAAAVLDSTTPQQ--LDQVVRYSKDELLENSPI 121
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATH 151
+ + MTL + S N + + + + + + + +
Sbjct: 122 TKDHVATGMTLRELCDAAVRFSDNTAGNLLLKHVGGPQGLDAALTAVGDEVTSADRWEPE 181
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+A T L + D + + A
Sbjct: 182 LNSAVPGDVRDTSTPRALAHDLRQFVLGDALAEDDRALLTDWLRRNTTGGTVIRAGVPAD 241
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL 244
G KTG G N +A ++ ++ ++
Sbjct: 242 WVVGDKTGSGYYGGRNDIAVLWPPNRAPIVMAVM 275
>gi|307596398|ref|YP_003902715.1| hypothetical protein Vdis_2296 [Vulcanisaeta distributa DSM 14429]
gi|307551599|gb|ADN51664.1| conserved hypothetical protein [Vulcanisaeta distributa DSM 14429]
Length = 1121
Score = 40.0 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 20/235 (8%), Positives = 59/235 (25%), Gaps = 8/235 (3%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
+R++++I +A++ ++ ++ + D + + D+ A L
Sbjct: 14 IRRYVIITLIALILASIGAKALTPAVNSTHFIIYDLANAGLSYDQALDNYLEQA--YSLY 71
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T+ + T +S + T + + +
Sbjct: 72 TSTLGMKMAPPCNGSQYTVYVVSSLPGSEAGITEWEYTYNPSTNQILSTCIEYINISAG- 130
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
S + + ++ + T N ++ TA +
Sbjct: 131 ---LSSQWLEHTAYHELVHVSQWAYVQYTTIPQNYPWYIEADAEGTASYY--TNQCPMDQ 185
Query: 181 FPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
++ + GK N + G ++++
Sbjct: 186 DYFQYSQYEYDPYDYAGKPIINMYYYSAFIYWLIANGIGPATIEQNVFTSNSVIN 240
>gi|288924649|ref|ZP_06418586.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella buccae D17]
gi|288338436|gb|EFC76785.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella buccae D17]
Length = 424
Score = 40.0 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D N I PAS KL+TA
Sbjct: 81 MVWDLNADSCIYARNARQLLRPASTMKLVTAITAID 116
>gi|227538729|ref|ZP_03968778.1| beta-lactamase [Sphingobacterium spiritivorum ATCC 33300]
gi|227241238|gb|EEI91253.1| beta-lactamase [Sphingobacterium spiritivorum ATCC 33300]
Length = 396
Score = 40.0 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 30/223 (13%), Positives = 55/223 (24%), Gaps = 23/223 (10%)
Query: 36 TNTGHVIAEN-------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
G +I E + AS+TK MT+ + ++E K L +
Sbjct: 73 AKKGKIIYEKSFGWANYLLKDSLNIQSQFELASVTKPMTSIAILKLVEEGKLKLDQTVND 132
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
Y L N + ++
Sbjct: 133 FFPDFPYEGITVKMLLTHRSGLPNYVY--FADGVWKDKKKGMSNMDAIRLLTEHKPGRYG 190
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH--------YFQIKGLE 194
K G + N + + +D A+ D H Y +I
Sbjct: 191 KPDGRFHYNNSNFMVLGAIIEKVSKQDYAVFLKENVFDPAGMKHTAAYSKAVYEKIPVKV 250
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
I K + G G K ++ ++ A++ +
Sbjct: 251 IGHDKIWRRSVVQNFLDGPLGDKGIYSTVEDMFLLDIALREGR 293
>gi|208779024|ref|ZP_03246370.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Francisella novicida FTG]
gi|208744824|gb|EDZ91122.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Francisella novicida FTG]
Length = 464
Score = 40.0 bits (91), Expect = 0.58, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 27 KLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++D+ VI D + PAS TKL+T
Sbjct: 45 SAQIAVKIIDSEKNTVILSKNADKNFIPASNTKLLTGI 82
>gi|320148807|gb|ADW20349.1| blaPME-1 [Pseudomonas aeruginosa]
Length = 309
Score = 40.0 bits (91), Expect = 0.59, Method: Composition-based stats.
Identities = 29/222 (13%), Positives = 59/222 (26%), Gaps = 10/222 (4%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
LD +G + D + S KL+ A V ++ + T PI S +
Sbjct: 54 GVFALDAGSGRSL-GWREDERFGMCSTFKLLLAATVLDAARQGRLDGTAPIHFSDDDLVP 112
Query: 90 PPSNSTFKK---GSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKN 144
ST+T + + S N A + + + +
Sbjct: 113 HSPVLREHLALGSSTLTAPELARATQLTSDNAAANLLIRKLGGPEAVTALWRASGDEVSR 172
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
L + ++ ++ +++ ++
Sbjct: 173 LDRLEPDMNLLPPGDLRDSTSPRAMAQHVARLFTSEMLVPEDRERLREWMVETGTGLARL 232
Query: 205 WAVGTFLGADGMKTGFTCA----SGFNIVASAIQGDQSLIAV 242
A G KTG A + + VA ++ + V
Sbjct: 233 RAATPPHWQAGDKTGSAIAPLMPNKTHDVAVFWPPGRAPVIV 274
>gi|71900554|ref|ZP_00682682.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Xylella fastidiosa
Ann-1]
gi|71729674|gb|EAO31777.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Xylella fastidiosa
Ann-1]
Length = 498
Score = 40.0 bits (91), Expect = 0.59, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
D TG V+ +PAS KL+T Y F
Sbjct: 69 DGKTGDVLYARNTWSRASPASNLKLVTLYSAF 100
>gi|171462981|ref|YP_001797094.1| Peptidoglycan glycosyltransferase [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192519|gb|ACB43480.1| Peptidoglycan glycosyltransferase [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 590
Score = 40.0 bits (91), Expect = 0.59, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 33/133 (24%), Gaps = 24/133 (18%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHPW-------------- 51
+ N K +LDT TG ++A P+
Sbjct: 235 FLAYNAVKDAVEKHHAKAGGAVVLDTQTGEILALANYPSYNPNDRRFLTGEQLRNRVLTD 294
Query: 52 --NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
P S K +T + T + I P + +T+ ++
Sbjct: 295 TFEPGSTMKPLTIAIALEK---GSVKSDTNMVIGAKYLVGPKPITDTHPYGNLTVAQIIQ 351
Query: 110 LLIVKSANDIAVA 122
IA+
Sbjct: 352 KSSNIGTAKIAMN 364
>gi|118497232|ref|YP_898282.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella tularensis
subsp. novicida U112]
gi|194323533|ref|ZP_03057310.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Francisella tularensis subsp. novicida FTE]
gi|118423138|gb|ABK89528.1| serine-type D-Ala-D-Ala carboxypeptidase [Francisella novicida
U112]
gi|194322388|gb|EDX19869.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Francisella tularensis subsp. novicida FTE]
Length = 464
Score = 40.0 bits (91), Expect = 0.59, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 27 KLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++D+ VI D + PAS TKL+T
Sbjct: 45 SAQIAVKIIDSEKNTVILSKNADKNFIPASNTKLLTGI 82
>gi|89256796|ref|YP_514158.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Francisella tularensis subsp. holarctica LVS]
gi|167010750|ref|ZP_02275681.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Francisella tularensis subsp. holarctica FSC200]
gi|89144627|emb|CAJ79948.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Francisella tularensis subsp. holarctica LVS]
Length = 176
Score = 40.0 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 27 KLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++D+ VI D + PAS TKL+T
Sbjct: 45 SAQIAVKIIDSEKNTVILSKNADKNFIPASNTKLLTGI 82
>gi|117927409|ref|YP_871960.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Acidothermus cellulolyticus 11B]
gi|117647872|gb|ABK51974.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Acidothermus cellulolyticus 11B]
Length = 496
Score = 40.0 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 30 YYTLL-DTNTGHVIAENYPDHPWNPASLTKL 59
++ D TG V+ ++ + PAS K+
Sbjct: 107 AALVVTDPATGRVLLDDGGNRRMPPASTLKI 137
>gi|306836932|ref|ZP_07469884.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Corynebacterium accolens ATCC 49726]
gi|304567187|gb|EFM42800.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Corynebacterium accolens ATCC 49726]
Length = 430
Score = 40.0 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKL 59
++D+ TG V+ E+ D PAS TK+
Sbjct: 86 VIDSETGTVVWESDADKALTPASSTKV 112
>gi|290475312|ref|YP_003468200.1| beta-lactamase [Xenorhabdus bovienii SS-2004]
gi|289174633|emb|CBJ81427.1| Beta-lactamase (Penicillinase) [Contains: Beta-lactamase form I;
Beta-lactamase form II] [Xenorhabdus bovienii SS-2004]
Length = 296
Score = 40.0 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 30/219 (13%), Positives = 52/219 (23%), Gaps = 7/219 (3%)
Query: 30 YYTLLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
L+D + + + S +K+M + + + +L I ++
Sbjct: 52 GVVLIDTADHSTITY--RAHERFPLCSTSKMMAVSALLKKSETNEGLLNQRIHYQQSDIV 109
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLS 148
+ MTL I S N + + L T + L
Sbjct: 110 EYSPITEKHLKDGMTLAKLSAATIQYSDNTAMNLLIDQLGGTHDVTRFARSIGDNEFRLD 169
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI--KGKKYPNTNWA 206
TT S + + +E + A
Sbjct: 170 RKEPELNMVTPDDERDTTTPQAMADSLYKLALGNTLAATQRAQLVEWLKGNTTGGASIRA 229
Query: 207 VGTFLGADGMKTGFTCASGFNIVASAI--QGDQSLIAVI 243
G KTG N +A + LI V
Sbjct: 230 GVPDNWIVGDKTGRCDYGSTNDIAVIWPDKNKAPLILVT 268
>gi|126443150|ref|YP_001062378.1| class A beta-lactamase [Burkholderia pseudomallei 668]
gi|126222641|gb|ABN86146.1| class A beta-lactamase [Burkholderia pseudomallei 668]
Length = 314
Score = 40.0 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 39/272 (14%), Positives = 76/272 (27%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 30 LVAAISTPLIGACAPLRGHAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 88
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M V + + A+L I +K + G+ M++
Sbjct: 89 ERFPFCSTFKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 148
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + + + + + L A + T
Sbjct: 149 AATLQYSDNTAANLLIALLGGPQAVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 208
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 209 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 268
Query: 227 NIVASAIQGDQ----SLIAVILGALDRNTRNK 254
N + A ++ +I + + R+
Sbjct: 269 NDIGVAYPPNRAPIVFIIYTTMRNPNAQARDD 300
>gi|124026237|ref|YP_001015353.1| putative beta-lactamase [Prochlorococcus marinus str. NATL1A]
gi|123961305|gb|ABM76088.1| putative beta-lactamase [Prochlorococcus marinus str. NATL1A]
Length = 357
Score = 40.0 bits (91), Expect = 0.60, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 57/145 (39%), Gaps = 5/145 (3%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ + V AE D + AS K+ ++ L++++ + + +S++
Sbjct: 97 SAFFISLD-DQVYAEIKSDIKLSAASSIKVPILIILLRMLEKEEIIWNEKLILSEDVIGG 155
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+++ + + +++ +++ A + ++ +N K +GL+
Sbjct: 156 GSGWIAYQEIGEIFPVYEVASEMIRVSDNTATNLL----IKRLGGIKRVNQKFKEIGLNN 211
Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174
T N + + T+ +D+++
Sbjct: 212 TQINNYLPDLDGTNLTSTKDLSLAM 236
>gi|307707770|ref|ZP_07644249.1| penicillin-binding protein 1B [Streptococcus mitis NCTC 12261]
gi|307616268|gb|EFN95462.1| penicillin-binding protein 1B [Streptococcus mitis NCTC 12261]
Length = 820
Score = 40.0 bits (91), Expect = 0.61, Method: Composition-based stats.
Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG V+ + D +PAS TK + AY + A + +
Sbjct: 426 VLMDNKTGAVLGFVGGRNYQTNQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSASILS 485
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 486 NYPTKFSNGNPIMYVNSPGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 543
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 544 GYEIPEYGIESLPMGGGIEVTVAQH 568
>gi|307293773|ref|ZP_07573617.1| Beta-lactamase [Sphingobium chlorophenolicum L-1]
gi|306879924|gb|EFN11141.1| Beta-lactamase [Sphingobium chlorophenolicum L-1]
Length = 323
Score = 40.0 bits (91), Expect = 0.61, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
D +TG + D + AS K+ + S L L
Sbjct: 61 DLSTGETL-AYNGDTLFPMASTYKVAVTAKILSLLDAGSLSLDE 103
>gi|261414981|ref|YP_003248664.1| Peptidoglycan glycosyltransferase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261371437|gb|ACX74182.1| Peptidoglycan glycosyltransferase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327850|gb|ADL27051.1| putative penicillin-binding protein [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 628
Score = 40.0 bits (91), Expect = 0.61, Method: Composition-based stats.
Identities = 18/163 (11%), Positives = 35/163 (21%), Gaps = 31/163 (19%)
Query: 21 SIAETNKLPYYTLLDTNTGHVIA----------ENYP-----------DHPWNPASLTKL 59
+ K ++D TG ++A + P S K+
Sbjct: 169 VAEFSAKSASAVVVDPYTGEILAMASYPTFDPNSKNQGGDRAGKNEIVSMSYEPGSTFKV 228
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+TA + S D + + S +
Sbjct: 229 ITAAAALENNAVSP----------NKIFVNEGRCWQWNPRSEKICDTHVYGDMDMSEAMV 278
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ + M ++ G+ F N G
Sbjct: 279 QSSNIVFAKIASEVGAMGMYRMARAFGIGERAFDNYVGEENGR 321
>gi|116693023|ref|YP_838556.1| Beta-lactamase [Burkholderia cenocepacia HI2424]
gi|116651023|gb|ABK11663.1| Beta-lactamase [Burkholderia cenocepacia HI2424]
Length = 312
Score = 39.6 bits (90), Expect = 0.61, Method: Composition-based stats.
Identities = 41/226 (18%), Positives = 67/226 (29%), Gaps = 5/226 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT +G +I E+ + S K M + V + E+ +L +T +K
Sbjct: 73 IDTASGRII-EHRAGERFPFCSTFKAMLSAAVLAQSVERPGLLQQRVTYTKADLVNYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
S GS MT+ + I S N A + + + + + + + L T
Sbjct: 132 SEKHVGSGMTVAALCEAAIQYSDNSAANLLMKLIGGPSAVTAYARSIGDDTFRLDRWETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L D Q+ K A
Sbjct: 192 LNTALPGDPRDTTTPAAMAASLRVLTLGDALPAAQRAQLVAWLRGNKVGDKRIRAGVPAG 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDR-NTRNKV 255
G KTG N + ++ + R + R K
Sbjct: 252 WVVGDKTGTGDYGTTNDAGVIWPTSRAPIVLAVYYTQTRADARAKD 297
>gi|255534944|ref|YP_003095315.1| D-alanyl-D-alanine carboxypeptidase [Flavobacteriaceae bacterium
3519-10]
gi|255341140|gb|ACU07253.1| D-alanyl-D-alanine carboxypeptidase [Flavobacteriaceae bacterium
3519-10]
Length = 486
Score = 39.6 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D T +++ + P AS TKL+T
Sbjct: 79 VVFDPKTKKIVSSYNENTPLIAASTTKLLTTDTAM 113
>gi|300770260|ref|ZP_07080139.1| beta-lactamase [Sphingobacterium spiritivorum ATCC 33861]
gi|300762736|gb|EFK59553.1| beta-lactamase [Sphingobacterium spiritivorum ATCC 33861]
Length = 396
Score = 39.6 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 30/223 (13%), Positives = 55/223 (24%), Gaps = 23/223 (10%)
Query: 36 TNTGHVIAEN-------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
G +I E + AS+TK MT+ + ++E K L +
Sbjct: 73 AKKGKIIYEKSFGWANYLLKDSLNIQSQFELASVTKPMTSIAILKLVEEGKLKLDQTVND 132
Query: 83 SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
Y L N + ++
Sbjct: 133 FFPDFPYEGITVKMLLTHRSGLPNYVY--FADGVWKDKKKGMSNMDAIRLLTEHKPGRYG 190
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMH--------YFQIKGLE 194
K G + N + + +D A+ D H Y +I
Sbjct: 191 KPDGRFHYNNSNFMVLGAIIEKVSKQDYAVFLKENVFDPAGMKHTAAYSKAVYEKIPVKV 250
Query: 195 IKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ 237
I K + G G K ++ ++ A++ +
Sbjct: 251 IGHDKVWRRSVVQNFLDGPLGDKGIYSTVEDMFLLDIALREGR 293
>gi|269928638|ref|YP_003320959.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
gi|269787995|gb|ACZ40137.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
Length = 576
Score = 39.6 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 16/107 (14%), Positives = 29/107 (27%), Gaps = 3/107 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+ D TG D S+ K MTA ++ + E + L I + Y
Sbjct: 265 VADPITGMPYY---LDTHHRIGSVNKTMTATLILQLVDEGQLSLDDTIDQWFDGVTYGDQ 321
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ + + L + A + + M
Sbjct: 322 ITVRMLLNMTSGIGNFTLNPRWQEDFFANPERVFDPQEIVAYGIEME 368
>gi|118470558|ref|YP_890308.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
gi|118171845|gb|ABK72741.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
Length = 439
Score = 39.6 bits (90), Expect = 0.62, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 29/84 (34%)
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99
V+A D AS+ KL V +KE +TI+K+ +
Sbjct: 163 EVVAGTNTDLSLPLASIFKLYVLLAVSDAIKEGTLSWDDKLTITKDGKALGSAGLDKLPP 222
Query: 100 STMTLDNALKLLIVKSANDIAVAI 123
++ +++++A +
Sbjct: 223 GAQITVRTAAQQMISASDNMATDL 246
>gi|315607655|ref|ZP_07882650.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella buccae ATCC 33574]
gi|315250838|gb|EFU30832.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella buccae ATCC 33574]
Length = 425
Score = 39.6 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D N I PAS KL+TA
Sbjct: 82 MVWDLNADSCIYARNARQLLRPASTMKLVTAITAID 117
>gi|227872354|ref|ZP_03990706.1| hypothetical protein HMPREF6123_0645 [Oribacterium sinus F0268]
gi|227841803|gb|EEJ52081.1| hypothetical protein HMPREF6123_0645 [Oribacterium sinus F0268]
Length = 124
Score = 39.6 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGH---VIAENYPDHPWNPASLTKLMTAYV 64
L+ + + Y+ L++ + I+ N+P PAS+TKLMTA V
Sbjct: 67 LAIPSDTSAQIQDMDAEYFLLVEEDGKEGDRAISFNHPYDRTYPASITKLMTALV 121
>gi|149185476|ref|ZP_01863792.1| Beta-lactamase class A [Erythrobacter sp. SD-21]
gi|148830696|gb|EDL49131.1| Beta-lactamase class A [Erythrobacter sp. SD-21]
Length = 339
Score = 39.6 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 34 LDTNTGH---VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+D +TG V+ D + AS +K+ A V + + K L++
Sbjct: 76 IDLSTGQEIGVL----ADQRFPMASTSKVAIAAVYLAGVDAGKWTLSSEW 121
>gi|118467985|ref|YP_888728.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
gi|118169272|gb|ABK70168.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
Length = 414
Score = 39.6 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD + AS TK MTA V+ ++ K L P
Sbjct: 91 PDTHFRIASNTKTMTAAVIMLLAQDGKLSLDDP 123
>gi|289642578|ref|ZP_06474720.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Frankia symbiont of Datisca glomerata]
gi|289507573|gb|EFD28530.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Frankia symbiont of Datisca glomerata]
Length = 504
Score = 39.6 bits (90), Expect = 0.63, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 17/56 (30%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
A +S P ++D +G + + PAS K + A
Sbjct: 54 AAVSARLARPLANPALGNPVGLVVDALSGATLFDRGSTTAVAPASTLKTVVAAAAL 109
>gi|303251384|ref|ZP_07337561.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307252571|ref|ZP_07534466.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|307256999|ref|ZP_07538775.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|302649738|gb|EFL79917.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306859976|gb|EFM91994.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 6 str. Femo]
gi|306864483|gb|EFM96390.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
Length = 480
Score = 39.6 bits (90), Expect = 0.64, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+ I+ A ++ ++ + + T +I + D PAS K+ TA
Sbjct: 18 IFIPSISFAEINTSELLTNLPAGASA-SFIAKNLETNQIITQYQSDVFMLPASTQKVFTA 76
Query: 63 YVV 65
Sbjct: 77 LAA 79
>gi|271962984|ref|YP_003337180.1| beta-lactamase [Streptosporangium roseum DSM 43021]
gi|270506159|gb|ACZ84437.1| beta-lactamase [Streptosporangium roseum DSM 43021]
Length = 283
Score = 39.6 bits (90), Expect = 0.64, Method: Composition-based stats.
Identities = 35/236 (14%), Positives = 63/236 (26%), Gaps = 27/236 (11%)
Query: 34 LDTNTG-HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+D +TG V + D P AS+ KL F + +T +T+ + P+
Sbjct: 20 VDVDTGAEV--AHGADEPVVMASVFKLALLVEFFRQADAGRLDVTERVTVMADRHTPGPT 77
Query: 93 NSTFKKGS-TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ TM+L + L+I S N A A+ + + +
Sbjct: 78 GVSAMADDVTMSLRDLAYLMIAVSDNTAADALIGRVGLSAVNTMLAAEGLDGTWVEHDCR 137
Query: 152 -----FMNAHGV-----------------VQHGHYTTARDMAILSWRIKTDFPQYMHYFQ 189
+ G +T RDM L + D
Sbjct: 138 SLFASIVEDAGQEEMPTDPAVIARLRALDPARTSRSTPRDMTRLLGMVWRDEAASAASCA 197
Query: 190 IKGLEIKGKKYPNTNWAVGTFLGA-DGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ + +P+ A + KTG + +
Sbjct: 198 SMRRLLGLQVWPHRLAAGFPYDDVAVSGKTGTLPTLRNEVGVVEYPDGGRYAVAVF 253
>gi|91218246|ref|ZP_01255193.1| Beta-lactamase [Psychroflexus torquis ATCC 700755]
gi|91183609|gb|EAS70005.1| Beta-lactamase [Psychroflexus torquis ATCC 700755]
Length = 400
Score = 39.6 bits (90), Expect = 0.64, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ AS+TK+MT + ++ + +L P
Sbjct: 72 SINTETLIPIASMTKIMTTIAILQLYEKGEFLLDDP 107
>gi|254372601|ref|ZP_04988090.1| hypothetical protein FTCG_00165 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570328|gb|EDN35982.1| hypothetical protein FTCG_00165 [Francisella novicida GA99-3549]
Length = 464
Score = 39.6 bits (90), Expect = 0.64, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 27 KLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++D+ VI D + PAS TKL+T
Sbjct: 45 SAQIAVKIIDSEKNTVILSKNADKNFIPASNTKLLTGI 82
>gi|265752783|ref|ZP_06088352.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 3_1_33FAA]
gi|263235969|gb|EEZ21464.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 3_1_33FAA]
Length = 466
Score = 39.6 bits (90), Expect = 0.65, Method: Composition-based stats.
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKL-----------PYYTLLDTNTGHVIAENYPDH 49
M++ L + + + +++ + D G + D
Sbjct: 1 MKRVLFFFLLILSIHSINAQPLSQRLDALLHEEVLKTSEVGIAVFDLTAGESVYRYQDDK 60
Query: 50 PWNPASLTKLMTAYVVF 66
+ PAS+ K++T+
Sbjct: 61 LYRPASVEKIITSVTAL 77
>gi|229082970|ref|ZP_04215391.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
gi|228700370|gb|EEL52935.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock4-2]
Length = 346
Score = 39.6 bits (90), Expect = 0.65, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 8/125 (6%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS-- 94
++ D AS+ KL+ A I++S+ Y +
Sbjct: 34 KNDEILCSINEDKRLPLASMVKLIIAIEFAKQSANGIINENEYISLSELKKYYIKNTDGG 93
Query: 95 -TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF-----VQHMNNTSKNLGLS 148
K M +N +K V N + S + ++++N K LGL
Sbjct: 94 AHPKWEQDMIQNNQIKNDCVTLHNIARGMLQYSSNANTEYLINILGIENINQNIKELGLK 153
Query: 149 ATHFM 153
+
Sbjct: 154 HHEEV 158
>gi|165976364|ref|YP_001651957.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|165876465|gb|ABY69513.1| penicillin-binding protein 4, D-alanyl-D-alanine carboxypeptidase
[Actinobacillus pleuropneumoniae serovar 3 str. JL03]
Length = 480
Score = 39.6 bits (90), Expect = 0.66, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+ I+ A ++ ++ + + T +I + D PAS K+ TA
Sbjct: 18 IFIPSISFAEINTSELLTNLPAGASA-SFIAKNLETNQIITQYQSDVFMLPASTQKVFTA 76
Query: 63 YVV 65
Sbjct: 77 LAA 79
>gi|39933439|ref|NP_945715.1| putative class A beta-lactamase [Rhodopseudomonas palustris CGA009]
gi|39647285|emb|CAE25806.1| putative class A beta-lactamase precursor (penicillinase)
[Rhodopseudomonas palustris CGA009]
Length = 291
Score = 39.6 bits (90), Expect = 0.66, Method: Composition-based stats.
Identities = 35/214 (16%), Positives = 64/214 (29%), Gaps = 4/214 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+LDT +G +I + D + S K++ A +V + + K+ L ++ +K+
Sbjct: 50 VLDTASGRMI-GHRLDDRFPMCSTFKVLAAGLVLARVDRKQENLDRRVSYAKSDLVTYSP 108
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ MT+ + I S N A + + F + + + + L T
Sbjct: 109 ATEKHVEDGMTIAELCEAAITLSDNTAANLLLASFGGPAGLTAFARSLGDETTRLDRIET 168
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
A + L D Q+ A
Sbjct: 169 ELNEALAGDPRDTTSPRAMAQDLRALTLGDALSPASRAQLITWLKANTTGGTRLRAGVPP 228
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + LI +
Sbjct: 229 GWTVGDKTGTGGRGTANDIAVLWPLQRAPLIVTV 262
>gi|18844710|gb|AAL78277.1| K1 beta-lactamase [Klebsiella oxytoca]
gi|18844714|gb|AAL78279.1| K1 beta-lactamase [Klebsiella oxytoca]
gi|60416695|emb|CAI43412.1| beta-lactamase [Klebsiella oxytoca]
gi|60416697|emb|CAI43413.1| beta-lactamase [Klebsiella oxytoca]
Length = 291
Score = 39.6 bits (90), Expect = 0.66, Method: Composition-based stats.
Identities = 37/238 (15%), Positives = 65/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ G
Sbjct: 234 VGDKTGGGDYGTTNDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 291
>gi|307247933|ref|ZP_07529967.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
gi|306855583|gb|EFM87752.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 2 str. S1536]
Length = 480
Score = 39.6 bits (90), Expect = 0.66, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+ I+ A ++ ++ + + T +I + D PAS K+ TA
Sbjct: 18 IFIPSISFAEINTSELLTNLPAGASA-SFIAKNLETNQIITQYQSDVFMLPASTQKVFTA 76
Query: 63 YVV 65
Sbjct: 77 LAA 79
>gi|289207652|ref|YP_003459718.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Thioalkalivibrio sp. K90mix]
gi|288943283|gb|ADC70982.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Thioalkalivibrio sp. K90mix]
Length = 488
Score = 39.6 bits (90), Expect = 0.66, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
G V+A D P+NPAS KL T+ L T
Sbjct: 68 GAVLARLNADTPYNPASTVKLATSLAALHELGPNYTWTTEIW 109
>gi|254374056|ref|ZP_04989538.1| hypothetical protein FTDG_00217 [Francisella novicida GA99-3548]
gi|151571776|gb|EDN37430.1| hypothetical protein FTDG_00217 [Francisella novicida GA99-3548]
Length = 464
Score = 39.6 bits (90), Expect = 0.66, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 27 KLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++D+ VI D + PAS TKL+T
Sbjct: 45 SAQIAVKIIDSEKNTVILSKNADKNFIPASNTKLLTGI 82
>gi|53729015|ref|ZP_00134267.2| COG2027: D-alanyl-D-alanine carboxypeptidase (penicillin-binding
protein 4) [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126208421|ref|YP_001053646.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Actinobacillus
pleuropneumoniae L20]
gi|307250189|ref|ZP_07532147.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|126097213|gb|ABN74041.1| penicillin-binding protein 4 precursor [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|306857788|gb|EFM89886.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 480
Score = 39.6 bits (90), Expect = 0.67, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+ I+ A ++ ++ + + T +I + D PAS K+ TA
Sbjct: 18 IFIPSISFAEINTSELLTNLPAGASA-SFIAKNLETNQIITQYQSDVFMLPASTQKVFTA 76
Query: 63 YVV 65
Sbjct: 77 LAA 79
>gi|282896380|ref|ZP_06304401.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Raphidiopsis
brookii D9]
gi|281198668|gb|EFA73548.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Raphidiopsis
brookii D9]
Length = 431
Score = 39.6 bits (90), Expect = 0.68, Method: Composition-based stats.
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 32 TLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
L+ + ++ +I + PAS TK++T +
Sbjct: 5 ILIKNLSSDQIIYSRDAQKYFIPASTTKILTTAAAWQK 42
>gi|229818434|ref|ZP_04448715.1| hypothetical protein BIFANG_03741 [Bifidobacterium angulatum DSM
20098]
gi|229784304|gb|EEP20418.1| hypothetical protein BIFANG_03741 [Bifidobacterium angulatum DSM
20098]
Length = 461
Score = 39.6 bits (90), Expect = 0.68, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
G + AE D PAS TK +TA+ L+ L T + ++
Sbjct: 88 AADGTIAAERNLDTEREPASTTKTLTAFTAVHTLEM-SGTLDTEVYLTH 135
>gi|323714483|pdb|3NI9|A Chain A, Ges-2 Carbapenemase Apo Form
gi|323714484|pdb|3NI9|B Chain B, Ges-2 Carbapenemase Apo Form
gi|325053913|pdb|3NIA|A Chain A, Ges-2 Carbapenemase Tazobactam Complex
Length = 269
Score = 39.6 bits (90), Expect = 0.68, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 25 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 83
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ F MT+ A + + S N + + M + +G S +
Sbjct: 84 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 138
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN------- 204
+ RD +T +++ N
Sbjct: 139 LDRKEPEMNDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 198
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 199 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 237
>gi|14276853|gb|AAK58421.1|AF326355_1 beta-lactamase GES-2 [Pseudomonas aeruginosa]
gi|19919177|gb|AAM08182.1|AF347074_2 expanded-spectrum beta-lactamase GES-2 [Pseudomonas aeruginosa]
Length = 287
Score = 39.6 bits (90), Expect = 0.68, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ F MT+ A + + S N + + M + +G S +
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN------- 204
+ RD +T +++ N
Sbjct: 157 LDRKEPEMNDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|323704892|ref|ZP_08116469.1| beta-lactamase [Thermoanaerobacterium xylanolyticum LX-11]
gi|323535818|gb|EGB25592.1| beta-lactamase [Thermoanaerobacterium xylanolyticum LX-11]
Length = 259
Score = 39.6 bits (90), Expect = 0.69, Method: Composition-based stats.
Identities = 31/218 (14%), Positives = 72/218 (33%), Gaps = 11/218 (5%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+ + TG +I + + AS K++ ++ KE LT I +S
Sbjct: 22 VKNLKTGEMI-GVNEEMMFPSASTIKILIMAQIYKMAKEGYIRLTDNIVLSDFMKTAGSG 80
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
L L++ +++ A + + ++++N +++LGL T
Sbjct: 81 VLYQLNSKHKFTIEELITLMIIISDNTAANVLIDIAD-----MKNINKMAEDLGLFHTKI 135
Query: 153 MNAHGVVQ-----HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+ +YT +DM L ++ + Y +K ++
Sbjct: 136 QRKMMDFEAIKSGKDNYTCPKDMTRLLEQMYSGKVVDEEYSIKMIEILKKQQDLGRLDMY 195
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILG 245
K G + ++ ++ +I+V+
Sbjct: 196 LPDDVLIAHKPGELKSLEHDVGIVFLKDCDYIISVMTN 233
>gi|56696278|ref|YP_166635.1| beta-lactamase, putative [Ruegeria pomeroyi DSS-3]
gi|56678015|gb|AAV94681.1| beta-lactamase, putative [Ruegeria pomeroyi DSS-3]
Length = 707
Score = 39.6 bits (90), Expect = 0.69, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + S +K+MTA +V ++E K L
Sbjct: 59 ADDRFEVGSQSKMMTAVLVLQLVQEGKVALDDK 91
>gi|21232469|ref|NP_638386.1| beta lactamase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66767447|ref|YP_242209.1| beta lactamase [Xanthomonas campestris pv. campestris str. 8004]
gi|21114253|gb|AAM42310.1| beta lactamase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66572779|gb|AAY48189.1| beta lactamase [Xanthomonas campestris pv. campestris str. 8004]
Length = 296
Score = 39.6 bits (90), Expect = 0.69, Method: Composition-based stats.
Identities = 33/208 (15%), Positives = 63/208 (30%), Gaps = 5/208 (2%)
Query: 33 LLDTNTG-HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
LLD+ +G + + + S K + A V + + + LT I I +
Sbjct: 55 LLDSGSGWRI--GQRENERFPMCSTFKFVLAAAVLQRVDKGELRLTQQIKIRASDMLEHA 112
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSA 149
+ G ++++ + ++ S N A + +F++ + +T
Sbjct: 113 PVTERHVGGSLSVAELCQATMIHSDNPAANLLFPLIGDPPGLTRFLRGIGDTKTRSDRLE 172
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T A A L + D Q Q+ I + + A
Sbjct: 173 PAMNGFAPGEPRDTTTPAAMAATLRTLLLGDALQPASRKQLTAWMIDNRTGDDCLRAGLP 232
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ 237
G KTG N +A +
Sbjct: 233 RDWKIGDKTGSNGTDTRNDIAIIWPPGR 260
>gi|89099759|ref|ZP_01172632.1| beta-lactamase [Bacillus sp. NRRL B-14911]
gi|89085506|gb|EAR64634.1| beta-lactamase [Bacillus sp. NRRL B-14911]
Length = 271
Score = 39.6 bits (90), Expect = 0.69, Method: Composition-based stats.
Identities = 36/221 (16%), Positives = 72/221 (32%), Gaps = 12/221 (5%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNSTFKKGSTMTL 104
+ ASL K+ F +E L+ + I + + +++++
Sbjct: 41 NSGRKYPAASLIKIPIMMEAFFQAEEGVLDLSEQVCIGGIEKAGGAGIIQSLSVTASLSI 100
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ---- 160
+ + L+I+ S N A + + L +++N+ LGL T +
Sbjct: 101 LDCITLMIIVSDNTAANLLIKLL------GKKNINDRMHGLGLQTTVLGRKMMDFEAAAK 154
Query: 161 -HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
++TTA DM IK ++ +++ A+ KTG
Sbjct: 155 GIDNFTTAADMVKCLRAIKDGELFSEKNRSKMLDIMEAQQFREKLPALACKELKIANKTG 214
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLL 260
+ A D AV++ L + L+
Sbjct: 215 ELPGIEHDCAIFASGRDVLYAAVLIEGLSSPEEGNHAIRLI 255
>gi|228992253|ref|ZP_04152186.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
12442]
gi|228998307|ref|ZP_04157902.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
gi|229005790|ref|ZP_04163488.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
gi|228755466|gb|EEM04813.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock1-4]
gi|228761459|gb|EEM10410.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides Rock3-17]
gi|228767506|gb|EEM16136.1| D-alanyl-D-alanine carboxypeptidase [Bacillus pseudomycoides DSM
12442]
Length = 369
Score = 39.6 bits (90), Expect = 0.70, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 44/172 (25%), Gaps = 4/172 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
L+ V+ PD AS KL+ A + + + + +S +
Sbjct: 51 SALLI-KRNDKVVYSVNPDVVLPVASTMKLIVALEFTKQVVDGRIDPNS--YVSIDDVNR 107
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+T +K + +A+ + K L
Sbjct: 108 YYIPNTDGGAQDRWQKYLMKTGKMDGNAISLEEVAKGMMKFSSNANTEYLMDRLGLDYIN 167
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ N + H + + + + K E+ ++Y
Sbjct: 168 QNLQNL-SLPSHQPLFPIVSSLYIPGYLHKELHIPKSKLEKKLKEMSSEEYR 218
>gi|90018740|gb|ABD84038.1| beta-lactamase A [Yersinia intermedia]
Length = 284
Score = 39.6 bits (90), Expect = 0.70, Method: Composition-based stats.
Identities = 32/213 (15%), Positives = 57/213 (26%), Gaps = 8/213 (3%)
Query: 37 NTG---HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
NTG ++ + S K M A V + + +L I ++
Sbjct: 46 NTGNGTKILY-RGA-RRFPFCSTFKFMLAAAVLGQSQSQPNLLNKHINYHESDLLSYAPI 103
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ MT+ I S N A + + +F + + + L
Sbjct: 104 TRKNLAHGMTVSELCAATIQYSDNTAANLLLKELGGLAAVNQFARSIGDQMFRLDRWEPD 163
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A ++ + D Q+ T A
Sbjct: 164 LNTALPNDPRDTTTPAAMAASINKLVLGDALHPAQRSQLTAWLKGNTTGDATIRAGAPTD 223
Query: 212 GADGMKTGF-TCASGFNIVASAIQGDQSLIAVI 243
G KTG + +I ++ V+
Sbjct: 224 WIVGDKTGSGDYGTTNDIAVLWPTKGAPIVLVV 256
>gi|296395122|ref|YP_003660006.1| beta-lactamase [Segniliparus rotundus DSM 44985]
gi|296182269|gb|ADG99175.1| beta-lactamase [Segniliparus rotundus DSM 44985]
Length = 278
Score = 39.6 bits (90), Expect = 0.71, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
L + +P +A T P + G V + + AS+TK+++ Y
Sbjct: 3 TALSLLDAWPVDHVAATVIAPSGVV--AEHGEV------ERVFPLASVTKILSGYAALLA 54
Query: 69 LKEKKAMLTTP 79
++E L P
Sbjct: 55 VQEGALGLDDP 65
>gi|319653092|ref|ZP_08007194.1| penicillin-binding protein [Bacillus sp. 2_A_57_CT2]
gi|317395013|gb|EFV75749.1| penicillin-binding protein [Bacillus sp. 2_A_57_CT2]
Length = 494
Score = 39.6 bits (90), Expect = 0.72, Method: Composition-based stats.
Identities = 14/96 (14%), Positives = 30/96 (31%), Gaps = 29/96 (30%)
Query: 1 MRQ-------FLVIIAMAMLSNIFPFLSIAETNKLPYYTLL------------------- 34
M++ L++ +A++ P + + +
Sbjct: 1 MKKSVKINISLLLVFMLALVPFAQPESPQVQATEEGSELVQQLNQMLNNDPILQGGLAGV 60
Query: 35 ---DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ TG ++ ++ D PAS KL+TA
Sbjct: 61 SIRNAETGELVYDHIGDIRLRPASNMKLLTAAAALE 96
>gi|52850982|emb|CAH57527.1| penicillin-binding protein 1b [Streptococcus pneumoniae]
Length = 443
Score = 39.6 bits (90), Expect = 0.72, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 40/145 (27%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 116 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 175
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + ++ K +++ M
Sbjct: 176 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYSLLRENGVDVKGYMEKM 233
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 234 GYEIPEYGIESLPMGGGIEVTVAQH 258
>gi|78061533|ref|YP_371441.1| Beta-lactamase [Burkholderia sp. 383]
gi|77969418|gb|ABB10797.1| Beta-lactamase [Burkholderia sp. 383]
Length = 530
Score = 39.6 bits (90), Expect = 0.72, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + NTG AE D S+TK+MT++++ +++ + L P
Sbjct: 90 IANLNTG---AEMTVDTRLQIGSVTKVMTSHLLMRYVEAGRIGLDDP 133
>gi|60416713|emb|CAI43421.1| beta-lactamase [Klebsiella oxytoca]
gi|60416715|emb|CAI43422.1| beta-lactamase [Klebsiella oxytoca]
Length = 291
Score = 39.6 bits (90), Expect = 0.72, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESHPDVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ G
Sbjct: 234 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 291
>gi|317401229|gb|EFV81873.1| beta-lactamase class A-like protein [Achromobacter xylosoxidans
C54]
Length = 287
Score = 39.6 bits (90), Expect = 0.72, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + G V+ ++ D AS+ K+ + + + L P
Sbjct: 39 DLDGGTVL-AHHADRVQPSASIIKVPILLALLEAVANGRYALEQP 82
>gi|226312677|ref|YP_002772571.1| D-alanyl-D-alanine carboxypeptidase precursor [Brevibacillus brevis
NBRC 100599]
gi|226095625|dbj|BAH44067.1| putative D-alanyl-D-alanine carboxypeptidase precursor
[Brevibacillus brevis NBRC 100599]
Length = 964
Score = 39.6 bits (90), Expect = 0.73, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLL---DTNTGH-VIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + I P L E + L+ D TG V+ E D PAS KL+T +
Sbjct: 506 LSAMIDPILDTPEAAGVTAGILIKSLD-TTGDPVLYERDADTLLTPASNLKLLTTATALN 564
Query: 68 F 68
Sbjct: 565 Q 565
>gi|219920897|emb|CAQ76626.1| beta-lactamase [Klebsiella oxytoca]
Length = 275
Score = 39.6 bits (90), Expect = 0.73, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + +L + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESHPDVLNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 234 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 264
>gi|60416721|emb|CAI43425.1| beta-lactamase [Klebsiella oxytoca]
gi|60416723|emb|CAI43426.1| beta-lactamase [Klebsiella oxytoca]
gi|60416725|emb|CAI43427.1| beta-lactamase [Klebsiella oxytoca]
Length = 291
Score = 39.6 bits (90), Expect = 0.73, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESHPDVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ G
Sbjct: 234 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 291
>gi|323191482|gb|EFZ76744.1| penicillin-binding protein ampH [Escherichia coli RN587/1]
Length = 385
Score = 39.6 bits (90), Expect = 0.74, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 32/111 (28%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY----------------------TLLDTNT 38
M++ L+ A+ +++ + + + ++D N
Sbjct: 1 MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFYGSGATGMALVVIDGNQ 60
Query: 39 ------GHVIAENYP----DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
G N D ASLTKLMT+ ++ L + L P
Sbjct: 61 RVFRSYGETRPGNNVRPQLDSVIRIASLTKLMTSEILVKLLDQGTVKLNDP 111
>gi|15805460|ref|NP_294156.1| beta-lactamase [Deinococcus radiodurans R1]
gi|6458117|gb|AAF10013.1|AE001903_1 beta-lactamase, putative [Deinococcus radiodurans R1]
Length = 277
Score = 39.6 bits (90), Expect = 0.75, Method: Composition-based stats.
Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+ D G + D + AS K+ L
Sbjct: 21 LVTDFA-GRELYAQAADAVFPAASTIKVPLLLFALEQAGRGDLDL 64
>gi|307307760|ref|ZP_07587489.1| putative beta-lactamase precursor protein [Sinorhizobium meliloti
BL225C]
gi|307317420|ref|ZP_07596860.1| putative beta-lactamase precursor protein [Sinorhizobium meliloti
AK83]
gi|306897009|gb|EFN27755.1| putative beta-lactamase precursor protein [Sinorhizobium meliloti
AK83]
gi|306901626|gb|EFN32228.1| putative beta-lactamase precursor protein [Sinorhizobium meliloti
BL225C]
Length = 287
Score = 39.6 bits (90), Expect = 0.76, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 5/120 (4%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ + TG I E D AS K + E + L P I+ A
Sbjct: 28 VVRNLKTGETI-ERGADEETPSASTRKTSIMMAALKAVHEGRLDLDEP--ITYEARFAEE 84
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S + T + +L+ I + + + ++ +++ K++G+ TH
Sbjct: 85 VASGMFRYLTPGIVISLRDAITGMMVLSDNVCTKMVFERL--TLEEVDSYCKSIGMHGTH 142
>gi|146277642|ref|YP_001167801.1| peptidoglycan glycosyltransferase [Rhodobacter sphaeroides ATCC
17025]
gi|145555883|gb|ABP70496.1| peptidoglycan glycosyltransferase [Rhodobacter sphaeroides ATCC
17025]
Length = 648
Score = 39.6 bits (90), Expect = 0.76, Method: Composition-based stats.
Identities = 14/146 (9%), Positives = 27/146 (18%), Gaps = 37/146 (25%)
Query: 27 KLPYYTLLDTNTGHVIA------------------------ENYPDHPW---------NP 53
+ +D TG ++A P P
Sbjct: 266 ESAAAVAIDVTTGDILAICSSPSFDPNLFVRGISYKDYSALTENDHRPLANKAVQGAYPP 325
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
S K++TA T + E K + + + L
Sbjct: 326 GSTFKMVTALAALEA---GVINADTSVYC-PGHYETGGRRFHCWKRGGHGMVSLSRSLSE 381
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMN 139
+ + +
Sbjct: 382 SCDVYYYDIAQRVGIDKIAEMGRRLG 407
>gi|221046604|pdb|3BYD|A Chain A, Crystal Structure Of Beta-Lactamase Oxy-1-1 From
Klebsiella Oxytoca
Length = 267
Score = 39.6 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 32 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITE 89
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 90 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 149
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 150 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 209
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ G
Sbjct: 210 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 267
>gi|83949981|ref|ZP_00958714.1| penicillin-binding protein 2 [Roseovarius nubinhibens ISM]
gi|83837880|gb|EAP77176.1| penicillin-binding protein 2 [Roseovarius nubinhibens ISM]
Length = 646
Score = 39.6 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 16/154 (10%), Positives = 33/154 (21%), Gaps = 37/154 (24%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAE------------------------NYPDH 49
SN+ ++ N+ ++D TG ++A
Sbjct: 252 SNLQAYIKDRLHNESAAAVVIDVQTGDILASGSTPAFDPNLFVRGISVADYKALLENKYR 311
Query: 50 PW---------NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS 100
P P S K++TA + + E K
Sbjct: 312 PLPNKAVQGVYPPGSTFKMVTALAALES---GQMTPNDTVYC-PGHLEVSSRRFHCWKRV 367
Query: 101 TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ + L + + +
Sbjct: 368 GHGNVDLNRSLRESCDVYYYEMALRTGIEKISEM 401
>gi|67921481|ref|ZP_00514999.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Crocosphaera
watsonii WH 8501]
gi|67856593|gb|EAM51834.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Crocosphaera
watsonii WH 8501]
Length = 309
Score = 39.6 bits (90), Expect = 0.77, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 32 TLLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
L++ G ++ + D + PAS TK+ T
Sbjct: 97 VLVEKLEDGTLLYTHNADRHFIPASNTKIFTTAAALQ 133
>gi|72382536|ref|YP_291891.1| putative beta-lactamase [Prochlorococcus marinus str. NATL2A]
gi|72002386|gb|AAZ58188.1| putative beta-lactamase [Prochlorococcus marinus str. NATL2A]
Length = 357
Score = 39.6 bits (90), Expect = 0.78, Method: Composition-based stats.
Identities = 19/145 (13%), Positives = 57/145 (39%), Gaps = 5/145 (3%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ + V AE D + AS K+ ++ L++K+ + + +S++
Sbjct: 97 SAFFISLD-DQVYAEIKSDIKLSAASSIKVPILIILLRMLEKKEIIWNEKLILSEDVIGG 155
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+++ + + +++ +++ A + ++ +N K +GL+
Sbjct: 156 GSGWMAYQEIGEIFPVYEVASEMIRVSDNTATNLL----IKRLGGIKIVNQKFKEIGLNN 211
Query: 150 THFMNAHGVVQHGHYTTARDMAILS 174
T N + + T+ +D+++
Sbjct: 212 TQINNYLPDLDGTNLTSTKDLSLAM 236
>gi|308177249|ref|YP_003916655.1| hypothetical protein AARI_14650 [Arthrobacter arilaitensis Re117]
gi|307744712|emb|CBT75684.1| conserved hypothetical protein [Arthrobacter arilaitensis Re117]
Length = 270
Score = 39.6 bits (90), Expect = 0.79, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 32 TLLDTNTGHVIAENYPDHP--WNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++D +G +I + + D + AS+TKL++AY L+E+ L P
Sbjct: 18 VVVDV-SGQII-DQHGDTQHAFPLASVTKLLSAYAFLVALEEEAISLDEP 65
>gi|241992520|gb|ACS73598.1| beta-lactamase GES10 [uncultured bacterium]
Length = 287
Score = 39.6 bits (90), Expect = 0.79, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 53/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRTAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLCDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|162455769|ref|YP_001618136.1| pencillin-binding transpeptidase [Sorangium cellulosum 'So ce 56']
gi|161166351|emb|CAN97656.1| pencillin-binding transpeptidase with putative regulatory
N-terminal domain [Sorangium cellulosum 'So ce 56']
Length = 726
Score = 39.6 bits (90), Expect = 0.79, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 18/60 (30%), Gaps = 6/60 (10%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNP---ASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
+LD TG V+A + P P S K +T +T K
Sbjct: 432 AATAIVLDPRTGEVLAIHDPSTAAAPRVSGSTIKSLTIAAALDE---GAIAVTDRFFCDK 488
>gi|74474884|dbj|BAE44430.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 289
Score = 39.6 bits (90), Expect = 0.79, Method: Composition-based stats.
Identities = 37/203 (18%), Positives = 61/203 (30%), Gaps = 3/203 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G I + D + S K + A V S + + A+L T + +
Sbjct: 51 LLDTASGRRI-GHRQDERFPMCSTFKSVLAATVLSQAERRPALLDTRVPVRDADLLSHAP 109
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIA--ESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ G MT+ + + I+ S N A + F++ +
Sbjct: 110 VTRRHAGKDMTVRDLCRATIITSDNTAANLLFGVVGGPPAVTAFLRASGDAVSRSDRLEP 169
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T A A L + + Q Q+ I + A
Sbjct: 170 ELNSFAKGDPRDTTTPAAMAATLQRVVLGEVLQLASRQQLADWLIDNETGDACLRAGLGK 229
Query: 211 LGADGMKTGFTCASGFNIVASAI 233
G KTG N +A
Sbjct: 230 RWRVGDKTGSNGEDARNDIAVLW 252
>gi|306828568|ref|ZP_07461763.1| penicillin-binding protein 1B [Streptococcus mitis ATCC 6249]
gi|304429367|gb|EFM32452.1| penicillin-binding protein 1B [Streptococcus mitis ATCC 6249]
Length = 831
Score = 39.2 bits (89), Expect = 0.80, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENY-----PDHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + A + +
Sbjct: 427 VLMDNQTGAILGFVGGRNYQENQNNHAIDTKRSPASTTKPILAYGIAIDQGLMGSASILS 486
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ + ++ + + + K +++ M
Sbjct: 487 NYPTNFSNGNPIMYVNSPGTAMMTLGEALNYSWNIPAYW--TYRTLREKGVDVKGYMEKM 544
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 545 GYEIPEYGIESLPMGGGIEVTVAQH 569
>gi|322514697|ref|ZP_08067724.1| D-alanyl-D-alanine carboxypeptidase DacB [Actinobacillus ureae
ATCC 25976]
gi|322119346|gb|EFX91459.1| D-alanyl-D-alanine carboxypeptidase DacB [Actinobacillus ureae
ATCC 25976]
Length = 196
Score = 39.2 bits (89), Expect = 0.81, Method: Composition-based stats.
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ + +T +IA+ D PAS K+ TA
Sbjct: 38 PAGSSATFIAKNLDTNQIIAQYQSDTFMLPASTQKVFTALAA 79
>gi|317506500|ref|ZP_07964300.1| tat pathway signal sequence [Segniliparus rugosus ATCC BAA-974]
gi|316255210|gb|EFV14480.1| tat pathway signal sequence [Segniliparus rugosus ATCC BAA-974]
Length = 297
Score = 39.2 bits (89), Expect = 0.81, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 4/123 (3%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT----TPITISKN 85
Y L D TG + AS KL+ A + + + LT + N
Sbjct: 74 SYVLRDRKTGATYHSQHASELIYTASTIKLLIATDLLVRQRAGQLTLTGPDKDLMHQMLN 133
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S+ +NS + K + L++ D + S + + L
Sbjct: 134 FSDNDAANSLWDKYNGPGGTTLLRVFQSYGFIDEINQHSPSASSMYWGNHKATADDLGRL 193
Query: 146 GLS 148
L
Sbjct: 194 MLY 196
>gi|307945692|ref|ZP_07661028.1| beta-lactamase [Roseibium sp. TrichSKD4]
gi|307771565|gb|EFO30790.1| beta-lactamase [Roseibium sp. TrichSKD4]
Length = 299
Score = 39.2 bits (89), Expect = 0.81, Method: Composition-based stats.
Identities = 29/208 (13%), Positives = 54/208 (25%), Gaps = 9/208 (4%)
Query: 35 DTNTGHVIAEN---YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
D TG D + S K M ++ I I +
Sbjct: 58 DLETG----SKTGWRADERFAMNSTFKFMLVAATLKRIENGDEQFDRSIDIDEADLVPWT 113
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN-TSKNLGLSAT 150
+ G TMT+ ++ KS N + +++ K + ++
Sbjct: 114 PVTEKHIGQTMTIHELCSAVMTKSDNLATNYLLKAMGGPAKLTALLRDAGDDVSISSRYE 173
Query: 151 HFMNAHGVVQHGHYTTARDM-AILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
NA G +T M + L + Q+ ++
Sbjct: 174 PEANAVGQNDDRDTSTPNAMVSNLERFVLGSTLSKASRAQLFDWMVENTTGLKRIRGGLP 233
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ 237
G +TG + +A A +
Sbjct: 234 DDWNAGDRTGTGSGGRASNIAIAYPPGR 261
>gi|220911087|ref|YP_002486396.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Arthrobacter chlorophenolicus A6]
gi|219857965|gb|ACL38307.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Arthrobacter chlorophenolicus A6]
Length = 509
Score = 39.2 bits (89), Expect = 0.81, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ D TG V+ + PAS KL+T+ L +
Sbjct: 119 IVQDALTGQVLFDRGGADGRVPASNMKLLTSVAALRALGPEH 160
>gi|254183414|ref|ZP_04890006.1| class A beta-lactamase [Burkholderia pseudomallei 1655]
gi|184213947|gb|EDU10990.1| class A beta-lactamase [Burkholderia pseudomallei 1655]
Length = 314
Score = 39.2 bits (89), Expect = 0.82, Method: Composition-based stats.
Identities = 39/272 (14%), Positives = 79/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 30 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 88
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M V + + A+L I +K + G+ M++
Sbjct: 89 ERFPFCSTFKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 148
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + +T + + + + + L A + T
Sbjct: 149 AATLQYSDNTAANLLIALLGGPQTVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 208
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 209 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 268
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 269 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 300
>gi|14578581|gb|AAK52328.1| class A beta-lactamase precursor [Burkholderia pseudomallei]
Length = 295
Score = 39.2 bits (89), Expect = 0.82, Method: Composition-based stats.
Identities = 39/272 (14%), Positives = 79/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 11 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 69
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K+M V + + A+L I +K + G+ M++
Sbjct: 70 ERFPFCSTFKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 129
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + +T + + + + + L A + T
Sbjct: 130 AATLQYSDNTAANLLIALLGGPQTVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 189
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 190 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 249
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 250 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 281
>gi|329895273|ref|ZP_08270915.1| Cell division protein FtsI (Peptidoglycan synthetase) [gamma
proteobacterium IMCC3088]
gi|328922395|gb|EGG29738.1| Cell division protein FtsI (Peptidoglycan synthetase) [gamma
proteobacterium IMCC3088]
Length = 581
Score = 39.2 bits (89), Expect = 0.83, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 26/101 (25%), Gaps = 25/101 (24%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNP 53
+ ++ +E +D++TG ++A P+ + P
Sbjct: 236 ALQSVVAKSEAMGA-SAITIDSHTGEILAVSNYPSFNPNDRSTFSASAARNRVFVDQYEP 294
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
S K +TA + T S
Sbjct: 295 GSTLKALTAVAALE---TGRYSADTVFNTSPGWMVVQGKTF 332
>gi|302654566|ref|XP_003019087.1| hypothetical protein TRV_06912 [Trichophyton verrucosum HKI 0517]
gi|291182784|gb|EFE38442.1| hypothetical protein TRV_06912 [Trichophyton verrucosum HKI 0517]
Length = 2960
Score = 39.2 bits (89), Expect = 0.83, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
D + AS+TKLMTA V ++ + L
Sbjct: 2621 DSVYWMASMTKLMTAIAVMLCVERGQISLDE 2651
>gi|226357104|ref|YP_002786844.1| beta-lactamase [Deinococcus deserti VCD115]
gi|226319094|gb|ACO47090.1| putative beta-lactamase (penicillinase) [Deinococcus deserti
VCD115]
Length = 280
Score = 39.2 bits (89), Expect = 0.83, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 1/45 (2%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + G + + AS K+ + + L
Sbjct: 24 DLD-GTELYALNATRTFPAASTIKVPLLIQALQEAQTGRLNLRER 67
>gi|229097055|ref|ZP_04228022.1| Beta-lactamase [Bacillus cereus Rock3-29]
gi|229116017|ref|ZP_04245411.1| Beta-lactamase [Bacillus cereus Rock1-3]
gi|228667412|gb|EEL22860.1| Beta-lactamase [Bacillus cereus Rock1-3]
gi|228686341|gb|EEL40252.1| Beta-lactamase [Bacillus cereus Rock3-29]
Length = 312
Score = 39.2 bits (89), Expect = 0.84, Method: Composition-based stats.
Identities = 32/225 (14%), Positives = 58/225 (25%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T I+ + + + AS K + A V+ L I +K
Sbjct: 75 IDTGTNQTISYRH-NERFAFASTYKALAAGVLLQQNSID--TLNEVIKFTKEDLVDYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAV--AIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M L + + S N K +K ++ + + T
Sbjct: 132 TEKHVDTGMKLGEIAEAAVRSSDNTAGNILFHKIGGPKGYEKALRQIGDRVTMSDRFETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T + L + + A
Sbjct: 192 LNEAIPGDIRDTSTAKAIASNLKAFTVGNALPAEKRKILTEWMKGNATGDKLIRAGVPTD 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G K+G N +A ++ +I IL + D
Sbjct: 252 WIVGDKSGAGSYGTRNDIAIVWPPNRAPIIIAILSSKDEKEATYD 296
>gi|94495536|ref|ZP_01302116.1| hypothetical beta-lactamase precursor (penicillin-binding protein)
[Sphingomonas sp. SKA58]
gi|94424924|gb|EAT09945.1| hypothetical beta-lactamase precursor (penicillin-binding protein)
[Sphingomonas sp. SKA58]
Length = 498
Score = 39.2 bits (89), Expect = 0.85, Method: Composition-based stats.
Identities = 18/130 (13%), Positives = 40/130 (30%), Gaps = 42/130 (32%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLL------------DTNTGHVIAE---- 44
M+ +LV++ + P L+ A+ ++ ++ D+++ +I
Sbjct: 1 MKFWLVLLLLCF-----PALAHAQADEKKIAAVVPDIDRLFHDFRQDSHSPGLIYGIVAN 55
Query: 45 -----------NYPDHPWN--------PASLTKLMTAYVVFSFLKEKKAMLTT--PITIS 83
D AS+TK TA + ++ K L +
Sbjct: 56 GRLVHVKAFGVQDLDQKRPVTPDSLFRIASMTKAFTALSILKLREDGKLSLDDLAEQHVP 115
Query: 84 KNASEYPPSN 93
+ P+
Sbjct: 116 ELRQWTYPTK 125
>gi|94984255|ref|YP_603619.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Deinococcus
geothermalis DSM 11300]
gi|94554536|gb|ABF44450.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Deinococcus
geothermalis DSM 11300]
Length = 473
Score = 39.2 bits (89), Expect = 0.85, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+ D TG ++ D P PAS KL+TA V
Sbjct: 66 LVRDLTTGELLEAREADLPLIPASNMKLVTAASVL 100
>gi|332881568|ref|ZP_08449217.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332680566|gb|EGJ53514.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 404
Score = 39.2 bits (89), Expect = 0.86, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D ++ PAS KL+TA S
Sbjct: 66 VYDLTDDTLLYAYQAKQRMRPASTEKLVTAVAALSE 101
>gi|297191072|ref|ZP_06908470.1| beta-lactamase [Streptomyces pristinaespiralis ATCC 25486]
gi|297150751|gb|EFH30768.1| beta-lactamase [Streptomyces pristinaespiralis ATCC 25486]
Length = 331
Score = 39.2 bits (89), Expect = 0.88, Method: Composition-based stats.
Identities = 39/264 (14%), Positives = 69/264 (26%), Gaps = 23/264 (8%)
Query: 14 SNIFPFLSIAETNKLPY-----------------YTLLDTNTGHVIAENYPDHPWNPASL 56
++ P S A +DT +G + PD + S
Sbjct: 35 ASTSPGASAAPKVSAAASGRAFARLQREFDARLGVYAVDTGSGRTVTHR-PDERFAYCST 93
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K +TA V A L + +++ + S MTL + S
Sbjct: 94 HKALTAAAVLEHNS--LAGLDKVVRYTRDDLVAHSPVTEKHVDSGMTLRAVCDAAVRYSD 151
Query: 117 NDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
N A + + K + + + +T+ + T A T L
Sbjct: 152 NTAANLLFDELGGPKAFQAVLAALGDTTTHADRLETALNAATPGDIRDTSTPRALAHDLR 211
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
D + A G +TG N +A A
Sbjct: 212 AYALGDVLDAEKKALLTHWLKGNTTGDALIRAGVPDTWQVGDRTGAGAYGTRNAIAVAWP 271
Query: 235 GD-QSLIAVILGALDRNTRNKVSA 257
++ +L + N+ +A
Sbjct: 272 PGAAPVVIAVLSSRAENSPIAKAA 295
>gi|254480182|ref|ZP_05093430.1| Penicillin-binding Protein dimerisation domain family [marine gamma
proteobacterium HTCC2148]
gi|214039744|gb|EEB80403.1| Penicillin-binding Protein dimerisation domain family [marine gamma
proteobacterium HTCC2148]
Length = 580
Score = 39.2 bits (89), Expect = 0.88, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 19/81 (23%), Gaps = 21/81 (25%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAE-----NYPDHP----------------WNPASLTK 58
A + LD TG ++A P+ + P S K
Sbjct: 244 AVTAANAESGSVVTLDAQTGEILAMVNYPVYNPNSRKNMKAANMRNRAITDTYEPGSTMK 303
Query: 59 LMTAYVVFSFLKEKKAMLTTP 79
MT + +
Sbjct: 304 TMTLVAALESGRYTTTTMIDT 324
>gi|119487906|ref|ZP_01621403.1| hypothetical protein L8106_28621 [Lyngbya sp. PCC 8106]
gi|119455482|gb|EAW36620.1| hypothetical protein L8106_28621 [Lyngbya sp. PCC 8106]
Length = 436
Score = 39.2 bits (89), Expect = 0.88, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 69/211 (32%), Gaps = 12/211 (5%)
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
D P +PASL K+ A + + ++ L + + + + S+ + ++ +L
Sbjct: 211 RGEDPPASPASLIKVPIAVALLEKISKENISLEEQVYV--DGGNFTEDASSIRARTSYSL 268
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTSKNLGLSATHFMNAHGV 158
+ + +I S+N + + L + K+ + K +G G
Sbjct: 269 NQLMGEMIDHSSNIATNQLIDYLGQDYINQTLEKQGYKETKVKFKLMGDRIMPKRPGSG- 327
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT 218
+ T+ ++ + + ++ G KT
Sbjct: 328 ---KNRLTSSELTEMMIKTYNHEYPNADALIQALNRQYDREIGYQALEDLVDAQWLGEKT 384
Query: 219 GFTCASGFNIVASAIQGDQSLIAVILGALDR 249
G +A +I G+Q +I VI +
Sbjct: 385 GQNSRMIGTTLAVSIDGEQYVITVIDNNTGK 415
>gi|145542863|ref|XP_001457118.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424933|emb|CAK89721.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 39.2 bits (89), Expect = 0.89, Method: Composition-based stats.
Identities = 34/223 (15%), Positives = 61/223 (27%), Gaps = 15/223 (6%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
+ LTKLM Y + ++ K L P NS
Sbjct: 119 YGVNENIKCEVGCLTKLMAIYTILQLCQDYKIRLQVPYYAESVPEPKADLNSYNYFTLEQ 178
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEK------KFVQHMNNTSKNLGLSATHFMNAH 156
L + + I ++E L + KF+ N ++ L ++ T + N
Sbjct: 179 LLYALILRGGNDALWSIVSGLSEKLYGITQRNLIKNKFLDLYNRNAQQLKMNNTRYTNLE 238
Query: 157 GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK--------GKKYPNTNWAVG 208
G+ + TTA + L F + + K + Y N
Sbjct: 239 GLADPNNVTTA-NDLCLLCDQLLKFDIFKRILKTKSYTCRATFENGDLSTVYTWKNRQFQ 297
Query: 209 TFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ G SG + + ++L +
Sbjct: 298 FMKKSFYGFQGINNNSGPCALLLPEADTNQMFVILLKCNPKQE 340
>gi|300774221|ref|ZP_07084088.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300758900|gb|EFK55729.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 416
Score = 39.2 bits (89), Expect = 0.90, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 10/123 (8%)
Query: 46 YPDHPWNPASLTKLMTAYVVFS---FLKEKKAMLTTPITI-SKNASEYPPSNSTFKKGST 101
P + PAS KL TA + L K TP+ I S + + +
Sbjct: 74 NPHWYFYPASTVKLPTAILALEKINELNIKGLTKDTPLKIDSAFEKQTLVDRDSSSESGL 133
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
++ ++ +++ S ND + E + + +N K G + +N +
Sbjct: 134 PSVGQYVRKILLTSDNDAQNRLFEFI------GREELNKKLKKYGTRNSRIVNRLAIGDK 187
Query: 162 GHY 164
G +
Sbjct: 188 GIW 190
>gi|311826245|emb|CBX55902.1| putative CTX-M-15 extended spectrum beta-lactamase [Escherichia
coli]
Length = 98
Score = 39.2 bits (89), Expect = 0.90, Method: Composition-based stats.
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 17/94 (18%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + S +K+M A V + + +L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLEKSESEPNLLNQR 97
>gi|90018742|gb|ABD84039.1| beta-lactamase A [Yersinia intermedia]
Length = 273
Score = 39.2 bits (89), Expect = 0.90, Method: Composition-based stats.
Identities = 33/213 (15%), Positives = 58/213 (27%), Gaps = 8/213 (3%)
Query: 37 NTG---HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
NTG ++ + S K M A V + + +L I ++
Sbjct: 36 NTGNCTKILY-RGA-RRFPFCSTFKFMLAAAVLGQSQSQPNLLNKHINYHESDLLSYAPI 93
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC--KTEKKFVQHMNNTSKNLGLSATH 151
+ MT+ I S N A + + L +F + + + L
Sbjct: 94 TRKNLAHGMTVSELCAATIQYSDNTAANLLLKELGGLAAVNQFARSIGDQMFRLDRWEPD 153
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A ++ + D Q+ T A
Sbjct: 154 LNTALPNDPRDTTTPAAMAASINKLVLGDALHPAQRSQLTAWLKGNTTGDATIRAGAPTD 213
Query: 212 GADGMKTGF-TCASGFNIVASAIQGDQSLIAVI 243
G KTG + +I ++ V+
Sbjct: 214 WIVGDKTGSGDYGTTNDIAVLWPTKGAPIVLVV 246
>gi|150389837|ref|YP_001319886.1| NLP/P60 protein [Alkaliphilus metalliredigens QYMF]
gi|149949699|gb|ABR48227.1| NLP/P60 protein [Alkaliphilus metalliredigens QYMF]
Length = 540
Score = 39.2 bits (89), Expect = 0.90, Method: Composition-based stats.
Identities = 35/247 (14%), Positives = 72/247 (29%), Gaps = 3/247 (1%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
H AS+ KL+ F ++EKK L +TI K + ++ + +D
Sbjct: 34 NDTHKMPSASIIKLLIMIEAFCQVEEKKFQLNQSLTIPKQDQIPHSMTTDLEENTFQFVD 93
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ V V I + + + + L F A + T
Sbjct: 94 LVQLMITVSDNTATNVLIDLLGFENINQRAEKLGLKETVLSRKMLDFKAAKE--GRQNLT 151
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASG 225
D + I T+ + + ++ KTG
Sbjct: 152 HGEDAIRMMELIVTEQAASPPMCRRMMDILFNQQDREMLRRFIPKKVKVAHKTGDLPNLN 211
Query: 226 FNIVASAIQGDQSLIAV-ILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQN 284
++ + LI V + GA D + + + + +++ ++K
Sbjct: 212 HDVGWVLLSDMSYLIGVFVNGAADNLEAKTIIGKISKLAYDYFSNQSPALALVKSTTAPI 271
Query: 285 LSNEVPN 291
P+
Sbjct: 272 QLKPAPD 278
>gi|326778115|ref|ZP_08237380.1| beta-lactamase [Streptomyces cf. griseus XylebKG-1]
gi|326658448|gb|EGE43294.1| beta-lactamase [Streptomyces cf. griseus XylebKG-1]
Length = 458
Score = 39.2 bits (89), Expect = 0.91, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + S+TK TA +V E L P
Sbjct: 57 DADTQYRIGSITKTFTAVLVLRLRDEGLIDLDDP 90
>gi|182437460|ref|YP_001825179.1| putative beta-lactamase [Streptomyces griseus subsp. griseus NBRC
13350]
gi|178465976|dbj|BAG20496.1| putative beta-lactamase [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 458
Score = 39.2 bits (89), Expect = 0.91, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + S+TK TA +V E L P
Sbjct: 57 DADTQYRIGSITKTFTAVLVLRLRDEGLIDLDDP 90
>gi|303252988|ref|ZP_07339143.1| truncated D-alanyl-D-alanine carboxypeptidase/endopeptidase
[Actinobacillus pleuropneumoniae serovar 2 str. 4226]
gi|302648179|gb|EFL78380.1| truncated D-alanyl-D-alanine carboxypeptidase/endopeptidase
[Actinobacillus pleuropneumoniae serovar 2 str. 4226]
Length = 184
Score = 39.2 bits (89), Expect = 0.92, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
F+ I+ A ++ ++ + + T +I + D PAS K+ TA
Sbjct: 18 IFIPSISFAEINTSELLTNLPAGASA-SFIAKNLETNQIITQYQSDVFMLPASTQKVFTA 76
Query: 63 YVV 65
Sbjct: 77 LAA 79
>gi|302386612|ref|YP_003822434.1| Peptidoglycan glycosyltransferase [Clostridium saccharolyticum WM1]
gi|302197240|gb|ADL04811.1| Peptidoglycan glycosyltransferase [Clostridium saccharolyticum WM1]
Length = 475
Score = 39.2 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 18/186 (9%), Positives = 44/186 (23%), Gaps = 36/186 (19%)
Query: 30 YYTLLDTNTGHVIA-----ENYPDHP-------------------------WNPASLTKL 59
+++ +TG ++A + P+ + P S KL
Sbjct: 161 AVVVMEPDTGKILAMVSKPDYNPNTLAADWSNLVAEDNNSGQLLNRATQGLYPPGSTFKL 220
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+TA +++E A I + + N +
Sbjct: 221 VTA---LEYMRENPANYRDYIFDCNGIYKNADYTIRCYHETAHGHQNLEQAFANSCNGAF 277
Query: 120 AVAIAESLCKTEKKFVQHMNNTSKN---LGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
+ + K + + + + + + +G TA
Sbjct: 278 SNLGLQLNLNKWKNTADQLLFNTDLPLPIAGNKSSYSMEYGADTWEILQTAIGQGQTQIT 337
Query: 177 IKTDFP 182
+
Sbjct: 338 PIHNAM 343
>gi|300245054|gb|ADJ94120.1| carbapenem-hydrolyzing extended-spectrum beta lactamase GES-16
[Serratia marcescens]
Length = 287
Score = 39.2 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMSDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|254498852|ref|ZP_05111560.1| D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin
binding protein 4 [Legionella drancourtii LLAP12]
gi|254351935|gb|EET10762.1| D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin
binding protein 4 [Legionella drancourtii LLAP12]
Length = 611
Score = 39.2 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKL 59
++D N+G + + PAS KL
Sbjct: 57 VVVDLNSGETLYRRNAQKLFIPASNMKL 84
>gi|124257957|gb|ABM92960.1| blaGES-5-like extended-spectrum beta-lactamase [Pseudomonas
aeruginosa]
Length = 287
Score = 39.2 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMSDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|109895419|gb|ABG47464.1| GES-5 extended-spectrum beta-lactamase [Pseudomonas aeruginosa]
gi|109895421|gb|ABG47465.1| GES-5 extended-spectrum beta-lactamase [Pseudomonas aeruginosa]
Length = 270
Score = 39.2 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 28 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 86
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 87 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 141
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 142 LDRKEPEMSDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 201
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 202 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 240
>gi|222159146|ref|YP_002563154.1| beta-lactamase GES-5 [Enterobacter cloacae]
gi|40888716|gb|AAR97270.1| class A beta-lactamase [Escherichia coli]
gi|89515723|gb|ABD75721.1| GES-5 extended-spectrum beta-lactamase [Pseudomonas aeruginosa]
gi|114319154|gb|ABI63577.1| extended-spectrum beta-lactamase GES-5 [Klebsiella pneumoniae]
gi|121722589|gb|ABM64784.1| extended spectrum beta-lactamase GES-5 [Pseudomonas aeruginosa]
gi|167374775|gb|ABZ79219.1| beta-lactamase GES-5 [Enterobacter cloacae]
gi|238865603|gb|ACR66835.1| beta-lactamase GES-5 [Klebsiella pneumoniae subsp. ozaenae]
gi|255039697|gb|ACT99627.1| GES-5 [Pseudomonas aeruginosa]
gi|294769320|gb|ADF36548.1| metallo-beta-lactamase blaGES-5 [Pseudomonas aeruginosa]
Length = 287
Score = 39.2 bits (89), Expect = 0.93, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMSDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|260893385|ref|YP_003239482.1| penicillin-binding protein 2 [Ammonifex degensii KC4]
gi|260865526|gb|ACX52632.1| penicillin-binding protein 2 [Ammonifex degensii KC4]
Length = 646
Score = 39.2 bits (89), Expect = 0.94, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 20/97 (20%), Gaps = 35/97 (36%)
Query: 22 IAETNKLPYYTLLDTNTGHVIA--------------------EN----YPDHPW------ 51
+ D +TG ++A PD P
Sbjct: 258 KGFPAPGGAAVVEDVHTGEILAMASYPSYDPSVFTRGLTPVEAKALFQNPDSPLLNRALS 317
Query: 52 --NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA 86
P S K++TA + S
Sbjct: 318 AYPPGSTFKMVTALAALEA---GIINPDFTVFCSGYY 351
>gi|289185668|gb|ADC91899.1| extended-spectrum beta-lactamase GES-14 [Acinetobacter baumannii]
gi|316308410|gb|ADU56652.1| extended-spectrum beta-lactamase GES-14 [Acinetobacter baumannii]
Length = 287
Score = 39.2 bits (89), Expect = 0.94, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 53/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMSDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGARNDIGFFKAQERDYAVAV 255
>gi|120611221|ref|YP_970899.1| beta-lactamase [Acidovorax citrulli AAC00-1]
gi|120589685|gb|ABM33125.1| Beta-lactamase [Acidovorax citrulli AAC00-1]
Length = 300
Score = 39.2 bits (89), Expect = 0.94, Method: Composition-based stats.
Identities = 40/260 (15%), Positives = 76/260 (29%), Gaps = 13/260 (5%)
Query: 11 AMLSNIFPFLSIAETNKLP-----YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+M S F + + LLD TG + D + S KL+ A V
Sbjct: 23 SMGSGAGAFARAVQEVEASVGGRLGVALLDMATGRQ-DAHRGDERFPLCSTFKLLLAAHV 81
Query: 66 FSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+ + L I+ K + EY P+ G MT++ + + S N A +
Sbjct: 82 LRRVDQGHERLDRRISYRKSDLVEYSPATERHADGDGMTVEQLCEAAVTLSDNTAANLLL 141
Query: 125 ESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFP 182
+ + +++ + +T L + T + + +
Sbjct: 142 GTQGGPLELTAWLRSLGDTQTRLDRMEPALNDVPPGEVRDTTTPRAMARTVWAVTQGEAL 201
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
++ + + A G KTG N D+ + V
Sbjct: 202 SAAARARMLAWLVGNRTGDRRLRAGMPEGWRIGEKTGTGPRGTSNDAGLFWPPDRGAVMV 261
Query: 243 ---ILGALDR-NTRNKVSAS 258
+ G+ R+ A
Sbjct: 262 SCYLTGSPAPAEQRDAAIAR 281
>gi|297561341|ref|YP_003680315.1| beta-lactamase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296845789|gb|ADH67809.1| Beta-lactamase [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 305
Score = 39.2 bits (89), Expect = 0.95, Method: Composition-based stats.
Identities = 32/230 (13%), Positives = 68/230 (29%), Gaps = 13/230 (5%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT +G E+ PD + AS K +TA +V ++ + +T ++
Sbjct: 68 VDTGSGEE-VEHRPDERFAYASTHKALTAALVLQQNTPEE--MEEVVTFTEEDLVDYSPV 124
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ + MTL + S N A + E L F + + ++ +
Sbjct: 125 TEQHVDTGMTLMEVADAAVRYSDNTAANLLFEEL-GGPDAFEDELEAIGDD--VTDPERI 181
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT-----NWAVG 208
T+ +F + + + NT A
Sbjct: 182 ETELNDWTPGDTSDTSTPRAMAGNLREFTLGDALPEDRREVLNDLLVNNTTGDALIRAGV 241
Query: 209 TFLGADGMKTGF-TCASGFNIVASAIQGDQSLIAVILGALDRNTR-NKVS 256
G KTG + + +I ++ ++ + + +
Sbjct: 242 PEDWRVGDKTGAGSHGTRNDIAVIWPPEGDPIVLAVMSSREAEDAEYDDA 291
>gi|284031110|ref|YP_003381041.1| beta-lactamase [Kribbella flavida DSM 17836]
gi|283810403|gb|ADB32242.1| beta-lactamase [Kribbella flavida DSM 17836]
Length = 432
Score = 39.2 bits (89), Expect = 0.96, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
PD + S+TK MTA +V + L
Sbjct: 56 PDVQYRVGSITKTMTAVLVLQARDDGLLGLND 87
>gi|269932040|gb|ACZ54536.1| beta-lactamase GES-13 [Pseudomonas aeruginosa]
Length = 287
Score = 39.2 bits (89), Expect = 0.96, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 58/219 (26%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVKWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
+ F MT+ A + + S N + + M + +G S +
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN------- 204
+ RD +T +++ N
Sbjct: 157 LDRKEPEMNDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|153845293|ref|ZP_01993758.1| beta-lactamase TEM [Vibrio parahaemolyticus AQ3810]
gi|149745125|gb|EDM56376.1| beta-lactamase TEM [Vibrio parahaemolyticus AQ3810]
Length = 114
Score = 39.2 bits (89), Expect = 0.96, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
S K++ V S + ++ TI +
Sbjct: 66 MMSTFKVLLCGAVLSRIDAGQSNSVAAYTILRMTW 100
>gi|52850984|emb|CAH57529.1| penicillin-binding protein 1b [Streptococcus pneumoniae]
Length = 443
Score = 39.2 bits (89), Expect = 0.96, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 116 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 175
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 176 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 233
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 234 GYEIPEYGIESLPMGGGIEVTVAQH 258
>gi|52850986|emb|CAH57530.1| penicillin-binding protein 1b [Streptococcus pneumoniae]
Length = 443
Score = 39.2 bits (89), Expect = 0.96, Method: Composition-based stats.
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + + +
Sbjct: 116 VLMDNQTGAILCFVGGRNYQENQNNHAFDTKRSPASTTKPLLAYGIAIDQGLMGSETILS 175
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 176 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLREKGVDVKGYMEKM 233
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 234 GYEIPEYGIESLPMGGGIEVTVAQH 258
>gi|313205589|ref|YP_004044766.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Riemerella
anatipestifer DSM 15868]
gi|312444905|gb|ADQ81260.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Riemerella
anatipestifer DSM 15868]
Length = 466
Score = 39.2 bits (89), Expect = 0.97, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 15/81 (18%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLDTNTGHVIAENY 46
M +FL+ I S + +K + + D G+ I E
Sbjct: 1 MTKFLMFILTFFYSLSLAQSVKDKLDKATKSFLNSPKMYAANMSFYVAD-ENGNFIYEYQ 59
Query: 47 PDHPWNPASLTKLMTAYVVFS 67
+ + AS K+ TA
Sbjct: 60 GNKGLSTASTQKIFTAATALE 80
>gi|85375695|ref|YP_459757.1| Beta-lactamase class A [Erythrobacter litoralis HTCC2594]
gi|84788778|gb|ABC64960.1| Beta-lactamase class A [Erythrobacter litoralis HTCC2594]
Length = 338
Score = 39.2 bits (89), Expect = 0.97, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 34 LDTNTGH---VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
LD +TG V+ D P+ AS +K+ A V + + K L++ + + +Y
Sbjct: 77 LDLSTGREIGVL----ADQPFPMASTSKVAIAAVYLAGVDAGKWSLSSEWRLPRPGGKYV 132
Query: 91 PSNSTFKKGSTMTLDNAL 108
P+ + + + ++
Sbjct: 133 PAKTLLDLMVSKSCNDCT 150
>gi|11513941|pdb|1E25|A Chain A, The High Resolution Structure Of Per-1 Class A Beta-
Lactamase
Length = 282
Score = 39.2 bits (89), Expect = 0.97, Method: Composition-based stats.
Identities = 22/229 (9%), Positives = 61/229 (26%), Gaps = 21/229 (9%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
P + S+ KL A +V + + K L + +++ K
Sbjct: 36 NPFEKFPMQSVFKLHLAMLVLHQVDQGKLDLNQTVIVNRAKVLQNTWAPIMKAYQGDEFS 95
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
++ L+ S + + L + +++ +++G+ T +
Sbjct: 96 VPVQQLLQYSVSHSDNVACDLLFELV-GGPAALHDYIQSMGIKETAVVANEAQ--MHADD 152
Query: 166 TARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL-------------- 211
+ S + + + + +
Sbjct: 153 QVQYQNWTSMKGAAEILKKFEQKTQLSETSQALLWKWMVETTTGPERLKGLLPAGTVVAH 212
Query: 212 --GADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN-TRNKVSA 257
G +K G T A+ ++ + + L+ + +R +
Sbjct: 213 KTGTSQIKAGKTAATN-DLGIILLPDGRPLLVAVFVKDSAESSRTNEAI 260
>gi|299135491|ref|ZP_07028680.1| Beta-lactamase [Afipia sp. 1NLS2]
gi|298589746|gb|EFI49952.1| Beta-lactamase [Afipia sp. 1NLS2]
Length = 294
Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 27/76 (35%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D + S KLM A + +++ + L + S++ + S MT+
Sbjct: 65 DERFPMCSTFKLMAAAAILKRVEQGQETLERRVHFSQSDLVTYSPATEKHLESGMTVAEL 124
Query: 108 LKLLIVKSANDIAVAI 123
+ I S N +
Sbjct: 125 CEAAITLSDNTAGNLM 140
>gi|295703598|ref|YP_003596673.1| hypothetical protein BMD_1464 [Bacillus megaterium DSM 319]
gi|294801257|gb|ADF38323.1| conserved hypothetical protein [Bacillus megaterium DSM 319]
Length = 259
Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats.
Identities = 32/204 (15%), Positives = 61/204 (29%), Gaps = 11/204 (5%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
AS KL+ A F + LT S + +
Sbjct: 37 NSFIQQRAASTIKLLLAIEAFRQIDAGILDLT-----SVIQRMEKNTVGGAGVLKALPQL 91
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG-----VVQ 160
+K+ + + I + + +N +KNLGL T
Sbjct: 92 THIKVEELLTLMIIVSDNTATNELISLVGFEKINECAKNLGLKKTVLNRYMMDEIAVEKG 151
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+YT A D+ I + ++ +++ + A KTG
Sbjct: 152 IDNYTCASDVVKCLREIYEGNLLQKSSREKIMRMLEMQQFQHKLPARIGSAFQAANKTGE 211
Query: 221 TCASGFNIVASAIQGDQSLIAVIL 244
+ + A ++G+++ AV+L
Sbjct: 212 LQGAEHD-SAILMRGNETYYAVVL 234
>gi|606841|gb|AAA83417.1| beta-lactamase [Aeromonas sobria]
Length = 264
Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats.
Identities = 25/247 (10%), Positives = 62/247 (25%), Gaps = 19/247 (7%)
Query: 1 MRQFLV--IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAEN-YPDHPWNPASLT 57
M + L+ ++A +L + + L G ++ PAS
Sbjct: 1 MSRLLLSGLLATGLLCAV-------PASAASGCFLYADGNGQTLSSEGDCSSQLPPASTF 53
Query: 58 KLMTAYVVFSFLKEKKAMLTTPI--TISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKS 115
K+ + + + + P+ + + +
Sbjct: 54 KIP---LALMGYDSGFLVNEEHPALPYKPSYDGWLPAWRETTTPRRWETYSVVWFSQQIT 110
Query: 116 ANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSW 175
+ + + + N K+ GL+ ++ + AR + +
Sbjct: 111 EWLGMERFQQYVDRFDYGNRDLSGNPGKHDGLTQAWLSSSLAISPEEQ---ARFLGKMVS 167
Query: 176 RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQG 235
Q + Y + + + + G+ V A +
Sbjct: 168 GKLPVSAQTLQYTANILKVSEVEGWQIHGKTGMGYPKKLDGSLNRDQQIGW-FVGWASKP 226
Query: 236 DQSLIAV 242
+ LI V
Sbjct: 227 GKQLIFV 233
>gi|255012812|ref|ZP_05284938.1| D-alanyl-D-alanine carboxypeptidase [Bacteroides sp. 2_1_7]
Length = 485
Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 11/78 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----------LPYYTLLDTNTGHVIAENYPDH 49
M + + + + + + K + D + G +
Sbjct: 1 MIRKISFFFLISCLYLSVGAQVPQPIKQFLRKPYMEGASFSLIVKDVHNGETVFAYDTLR 60
Query: 50 PWNPASLTKLMTAYVVFS 67
PAS+ K +T
Sbjct: 61 QLTPASVMKTVTTATALE 78
>gi|150009941|ref|YP_001304684.1| D-alanyl-D-alanine carboxypeptidase [Parabacteroides distasonis
ATCC 8503]
gi|149938365|gb|ABR45062.1| D-alanyl-D-alanine carboxypeptidase [Parabacteroides distasonis
ATCC 8503]
Length = 485
Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats.
Identities = 9/78 (11%), Positives = 20/78 (25%), Gaps = 11/78 (14%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-----------LPYYTLLDTNTGHVIAENYPDH 49
M + + + + + + K + D + G +
Sbjct: 1 MIRKISFFFLISCLYLSVGAQVPQPIKQFLRKPYMEGASFSLIVKDVHNGETVFAYDTLR 60
Query: 50 PWNPASLTKLMTAYVVFS 67
PAS+ K +T
Sbjct: 61 QLTPASVMKTVTTATALE 78
>gi|18844706|gb|AAL78275.1| K1 beta-lactamase [Klebsiella oxytoca]
Length = 291
Score = 39.2 bits (89), Expect = 0.98, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ G
Sbjct: 234 VGDKTGGGDYGTTNDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 291
>gi|322392582|ref|ZP_08066042.1| penicillin-binding protein 1B [Streptococcus peroris ATCC 700780]
gi|321144574|gb|EFX39975.1| penicillin-binding protein 1B [Streptococcus peroris ATCC 700780]
Length = 830
Score = 39.2 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTK-LMTAYVVFSFLKEKKAMLTT 78
L+D TG ++ ++ D +PAS TK ++ + A + +
Sbjct: 428 VLMDNKTGAILGFVGGRDYQSNQNNHAFDTKRSPASTTKPILVYGIAIDQGLMGSASILS 487
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ + + + + + +++ M
Sbjct: 488 NYPTKYSNGNPIMHVNSPGTAMMPLKEALSYSWNIPAYW--TYRMLREKGVDVRSYMEKM 545
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 546 GYYIPEYGIESLPMGGGIEVTVAQH 570
>gi|227502348|ref|ZP_03932397.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49725]
gi|227076902|gb|EEI14865.1| conserved hypothetical protein [Corynebacterium accolens ATCC
49725]
Length = 292
Score = 39.2 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 16/193 (8%), Positives = 44/193 (22%), Gaps = 26/193 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY-----TLLDTNTGHVIAENYPDHPWNPAS 55
M++ + + LS + + A + + ++G ++ S
Sbjct: 11 MKKLAISSLVTALSFVTIPAAQAVSLDPHSVPERTQITVRHDSGATVSTANSHESRPALS 70
Query: 56 LTKLMTAY-------VVFSFLKEKKAMLTTPITISKNASEYPP--------------SNS 94
L+K+ Y V E + S YP +
Sbjct: 71 LSKIYLGYWVLKYGSVADKAQVEHMIRYSDDNVASDLDRRYPQAIPSIIQEFGLSETHYT 130
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
+ + + ++ + + +A I + +
Sbjct: 131 GYWGTTQTSSEDVARFTAEIQHDPVAAPIFAGMATAAPVAADGYRQDFGTDHIPGVWGTK 190
Query: 155 AHGVVQHGHYTTA 167
+ +
Sbjct: 191 FGWSDDRTIHASV 203
>gi|237809427|ref|YP_002893867.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Tolumonas auensis DSM 9187]
gi|237501688|gb|ACQ94281.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Tolumonas auensis DSM 9187]
Length = 484
Score = 39.2 bits (89), Expect = 0.99, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 1 MRQFL---VIIAMAMLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASL 56
M +F+ I +++L+ +I+ + + V A + D PAS
Sbjct: 1 MLKFISSAFAIFLSVLTVCSAQAAISVPEGSRIALAFKEPGSDSV-AAYHGDTFMIPAST 59
Query: 57 TKLMTAYVV 65
KL+TA
Sbjct: 60 QKLLTALAA 68
>gi|13471048|ref|NP_102617.1| hypothetical protein mll0916 [Mesorhizobium loti MAFF303099]
gi|14021792|dbj|BAB48403.1| mll0916 [Mesorhizobium loti MAFF303099]
Length = 250
Score = 39.2 bits (89), Expect = 1.00, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 4/88 (4%)
Query: 22 IAETNKLPYYTLLDTNTGHVIAENYP-DHPWNPASLTKLMTAYVVFSF---LKEKKAMLT 77
A + + D +G V+ ++ D P++PAS K+ + + + E
Sbjct: 5 SAPLGDVQCTLIADAASGKVLYQDGTCDQPFSPASTFKVPLSLIGYDAGILSDEHTPSWD 64
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLD 105
+ + + + ++
Sbjct: 65 YKPEFNAAKRDQKIVDPVIWEKDSVLWY 92
>gi|316931589|ref|YP_004106571.1| beta-lactamase [Rhodopseudomonas palustris DX-1]
gi|315599303|gb|ADU41838.1| Beta-lactamase [Rhodopseudomonas palustris DX-1]
Length = 291
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 32/246 (13%), Positives = 68/246 (27%), Gaps = 9/246 (3%)
Query: 18 PFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
+ + +LD++ G +I + D + S K++ A +V + + K
Sbjct: 33 AIAARFAELEARSGGRLGVCVLDSSNGRMI-GHRLDERFPMCSTFKVLAAGLVLARVDRK 91
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKT 130
+ L ++ +K+ + + MT+ + I S N + +
Sbjct: 92 QESLDRRVSYTKSDLVTYSPATETRVEGGMTIAELCEAAITLSDNTAGNLLLGSFGGPAG 151
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
F + + + + L T A + L D +
Sbjct: 152 LTAFARSLGDQTTRLDRIETELNEALPGDARDTTSPRTIAQDLRALALGDALTPSSRALL 211
Query: 191 KGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDR 249
A KTG N +A + LI +
Sbjct: 212 VAWMKANTTGGARIRAGVPSGWIVADKTGTGERGTANDIAVLWPPQRAPLIVTVYLTGAT 271
Query: 250 NTRNKV 255
+R++
Sbjct: 272 VSRDQQ 277
>gi|229525284|ref|ZP_04414689.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
VL426]
gi|229338865|gb|EEO03882.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae bv. albensis
VL426]
Length = 487
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 7 IIAMAMLSNIFPFLSIAETNK--LPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ + ++ P + Y L+ D + E + PAS K++TA
Sbjct: 22 FLIASPINAQIPLTAATTKLPQGARYSLLIEDAASQQNTLELNTHLYYPPASTQKILTAL 81
Query: 64 VV 65
Sbjct: 82 AA 83
>gi|255308238|ref|ZP_05352409.1| putative penicillin-binding protein [Clostridium difficile ATCC
43255]
Length = 340
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 22/219 (10%), Positives = 55/219 (25%), Gaps = 14/219 (6%)
Query: 36 TNTGHVIAEN-----YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
G V+ E D ++ AS+TK + + ++ + + +
Sbjct: 46 ARKGKVVFEKYYNGYNTDDTFHVASVTKSIISALIGIAIDKGYIKDVDQKVVDFFPEYTC 105
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ KK T+ + ++ K + + + +G
Sbjct: 106 SPSEVCKKAVTIRHLLTMTAPYPFKNMTESLERLCKQKDWIKYTLNQLGQKGE-IGTFKY 164
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
H + TT + + + + + N
Sbjct: 165 SSAGTHLLSAIITKTTGKSAREFANEYLFKPIGMKIIPDYDMKDFGFEDFFGKNLKGWAK 224
Query: 211 L--GADGMKTGFTCASGFNIVASA------IQGDQSLIA 241
G G T ++ + I ++ +I+
Sbjct: 225 DRQGYSTGGWGLTLSARDMLRFGFLYLNDGIWNNKRIIS 263
>gi|163744646|ref|ZP_02152006.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Oceanibulbus indolifex HEL-45]
gi|161381464|gb|EDQ05873.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Oceanibulbus indolifex HEL-45]
Length = 510
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ ++D +G + + PAS K +TA
Sbjct: 46 AFAVIDVESGIWLEASNATDGIPPASSIKAITALYALDQ 84
>gi|119716933|ref|YP_923898.1| beta-lactamase [Nocardioides sp. JS614]
gi|119537594|gb|ABL82211.1| beta-lactamase [Nocardioides sp. JS614]
Length = 417
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + S+TK MTA +V +++ + L P
Sbjct: 23 ADVQYRIGSITKTMTAVLVLQLVRDGRLGLDEP 55
>gi|4104150|gb|AAD01957.1| penicillin-binding protein homolog [Listeria monocytogenes]
Length = 144
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 10/82 (12%)
Query: 259 LLSMGFYNKTDRKKINYIIK---------DFYQQNLSNEVPNISEEVCTTQKEIINYNTQ 309
+L F N ++ K D +++ V + ++ K
Sbjct: 1 MLDYAFNNFKVKEVQKAGSKVKNPSTIAVDKGKEDTVGLVTKDAVKLVVP-KNGNEPKLN 59
Query: 310 MKEAKDKESHFIDFEKITLLKN 331
K +++ +K T +
Sbjct: 60 TKVTMKEKTIEAPVKKGTEVGK 81
>gi|66269636|gb|AAY43207.1| GES-9 [Pseudomonas aeruginosa]
Length = 287
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 53/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGSRNDIGFFKAQERDYAVAV 255
>gi|115034|sp|P22391|BLO1_KLEOX RecName: Full=Beta-lactamase OXY-1; AltName: Full=Penicillinase;
Flags: Precursor
gi|456261|emb|CAA82916.1| beta-lactamase OXY-1-1 [Klebsiella oxytoca]
gi|456263|emb|CAA82917.1| beta-lactamase [Klebsiella oxytoca]
gi|530143|gb|AAA25084.1| beta-lactamase [Klebsiella oxytoca]
Length = 291
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ G
Sbjct: 234 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 291
>gi|289644227|ref|ZP_06476316.1| penicillin-binding protein transpeptidase [Frankia symbiont of
Datisca glomerata]
gi|289505950|gb|EFD26960.1| penicillin-binding protein transpeptidase [Frankia symbiont of
Datisca glomerata]
Length = 593
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 20 LSIAETNKLPYYTL-LDTNTGHVI---------AENYPDHPWNPASLTKLMTAYVVFSFL 69
++A +K + +D TG V+ + + P S K++TA
Sbjct: 311 AAMATASKPAGALVAVDVRTGGVLALVNHPLNGYGRAINGRYPPGSTFKIVTATAALLAG 370
Query: 70 KEKKAMLTTPITI 82
K+ L T+
Sbjct: 371 KDANTPLDCTQTV 383
>gi|16263521|ref|NP_436314.1| putative Beta lactamase [Sinorhizobium meliloti 1021]
gi|14524221|gb|AAK65726.1| Beta-lactamase [Sinorhizobium meliloti 1021]
Length = 281
Score = 39.2 bits (89), Expect = 1.0, Method: Composition-based stats.
Identities = 34/215 (15%), Positives = 64/215 (29%), Gaps = 7/215 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
L+ +TG + D + S K + + +V + + + L I SK Y
Sbjct: 39 LNLSTGAR-VGHRADERFLMCSTFKALASAMVLARVDKGVEKLDRRIVFSKEVLVYFSPV 97
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK---FVQHMNNTSKNLGLSAT 150
+ + G L + + +++ A+ + FV+ + L
Sbjct: 98 TETRVGGEGMSVAELCMATLTQSDNTAINLLLESFGGPPALTEFVRSFGDELTRLDRFEP 157
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKT-DFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
G TT M ++ + Q+ G + K + A
Sbjct: 158 ELNEHDGPDDLRDTTTPGAMMETLRKLIFGEVLSRSSRAQLAGWMVMNKTGDSRLRAGMP 217
Query: 210 FLGADGMKTGFTCASG--FNIVASAIQGDQSLIAV 242
KTG N +A A ++ I V
Sbjct: 218 ESWMIADKTGGNGNQHANNNDIAVAWSPNRGAIVV 252
>gi|296166691|ref|ZP_06849116.1| PBP4 family D-alanyl-D-alanine carboxypeptidase [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295897956|gb|EFG77537.1| PBP4 family D-alanyl-D-alanine carboxypeptidase [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 450
Score = 38.8 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMT---AYVVFSFL 69
+ D TG + + D P PAS K++T A +
Sbjct: 82 VTDAMTGKELWQVAADLPLVPASTNKVLTSAAALLTLDHQ 121
>gi|307726917|ref|YP_003910130.1| Beta-lactamase [Burkholderia sp. CCGE1003]
gi|307587442|gb|ADN60839.1| Beta-lactamase [Burkholderia sp. CCGE1003]
Length = 315
Score = 38.8 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 38/237 (16%), Positives = 66/237 (27%), Gaps = 13/237 (5%)
Query: 33 LLDTNTGHVIAEN-YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS-----KNA 86
++DT +G + D + S KL+ A V + + + L I S N+
Sbjct: 71 IVDTTSG--LHAGLRADERFPMCSTFKLLAAGAVLARVDRGEENLQRRIVYSQSELVPNS 128
Query: 87 SEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKN 144
+ M++ K I S N A + +S F + + +
Sbjct: 129 PATSRHTRERTGSAGMSIAELCKAAITLSDNTAANLLLQSFGGPAALTAFARSLGDGMTR 188
Query: 145 LGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
L + A T + L + + Q+ +
Sbjct: 189 LDRNEPTLNEAAPGDPRDTTTPNAMLGNLRALVMGEQLSSTSRVQLLAWLAANETGGARI 248
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAV---ILGALDRNTRNKVSAS 258
A G KTG N VA + I V + G R + +
Sbjct: 249 RARLPKDWGVGDKTGTGGHGTANDVAILWPPGRGPILVAVYLTGTAGTAARCNAAIA 305
>gi|85714967|ref|ZP_01045952.1| Penicillin-binding protein, transpeptidase [Nitrobacter sp.
Nb-311A]
gi|85698164|gb|EAQ36036.1| Penicillin-binding protein, transpeptidase [Nitrobacter sp.
Nb-311A]
Length = 579
Score = 38.8 bits (88), Expect = 1.0, Method: Composition-based stats.
Identities = 18/139 (12%), Positives = 32/139 (23%), Gaps = 26/139 (18%)
Query: 26 NKLPYYTLLDTNTGHVIA--------------ENYPDH-------PWNPASLTKLMTAYV 64
K + + TG +IA + PD + S K T +
Sbjct: 245 AKAASGIVSNVRTGEIIAMVSLPDFDPNNPKEAHDPDRINRLTTGVYEMGSTFKAFTLAM 304
Query: 65 VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
K + A + N ++ S A
Sbjct: 305 ALDSGKYGLNSMWD-----ARAPLRYGRFTIHDDHRMGRFINMKEVFTYSSNIGAARIAL 359
Query: 125 ESLCKTEKKFVQHMNNTSK 143
+ K F++ M +
Sbjct: 360 AQGVEAHKAFLRKMGQMDR 378
>gi|300782261|ref|YP_003762552.1| lipoprotein [Amycolatopsis mediterranei U32]
gi|299791775|gb|ADJ42150.1| lipoprotein [Amycolatopsis mediterranei U32]
Length = 293
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
Y ++D TG V + + + ASL KL A +
Sbjct: 24 SYIVVDQETGTV-SASDEHKQYRSASLVKLFIALDYLESHGPDYEIPAD 71
>gi|288940270|ref|YP_003442510.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Allochromatium
vinosum DSM 180]
gi|288895642|gb|ADC61478.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Allochromatium
vinosum DSM 180]
Length = 409
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 23/64 (35%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+ + + + +A+ LP +LL G + PAS KL+TAY
Sbjct: 24 LIAALWLGLAHTALADDPVAQVRALPQASLLVKERGQDRIAYQAETARIPASTMKLLTAY 83
Query: 64 VVFS 67
Sbjct: 84 AALE 87
>gi|83717141|ref|YP_439646.1| class A beta-lactamase [Burkholderia thailandensis E264]
gi|83650966|gb|ABC35030.1| class A beta-lactamase precursor [Burkholderia thailandensis E264]
Length = 322
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 46/276 (16%), Positives = 83/276 (30%), Gaps = 22/276 (7%)
Query: 1 MRQFLVIIAMA--MLSNIFPFLSIAETNKLP--------------YYTLLDTNTGHVIAE 44
+R+ L+I A++ ++ P A + LDT TG I
Sbjct: 34 LRRSLLIAAVSAPLVGACAPLRDNARNVAAEQQLRELESTFDGRLGFVALDTATGARI-A 92
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
+ D + S K M + V + A+L I +K + G+ MT+
Sbjct: 93 HRADERFPFCSTFKTMLSAAVLARSAGDAALLQRRIPYAKRDLVRYSPITEKHVGAGMTV 152
Query: 105 DNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ S N A + + + + + + + L T A +
Sbjct: 153 AELCAATLQYSDNTAANLLIALLGGPQAVTAYARSIGDATFRLDRRETELNTAIPGDERD 212
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
T A A + + D Q+ + K A KTG
Sbjct: 213 TTTPAAMAASVRRLLVGDALGTAQRAQLNAWMLGNKTGDARIRAGVPAGWRVADKTGTGD 272
Query: 223 ASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSA 257
N + A D+ ++ V+ +RN +
Sbjct: 273 YGTGNDIGVAYPPDRAPIVFVV--YTTMRSRNAQAR 306
>gi|1705476|sp|P52664|BLAB_PROVU RecName: Full=Beta-lactamase; AltName: Full=Cefuroximase; Flags:
Precursor
gi|511056|emb|CAA56427.1| beta-lactamase [Proteus vulgaris]
Length = 300
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 33/200 (16%), Positives = 60/200 (30%), Gaps = 3/200 (1%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ + AS +K+M V +++ +L ITI K+ + + M+L
Sbjct: 67 GEERFAMASTSKVMAVAAVLKESEKQAGLLDKNITIKKSDLVAYSPITEKHLVTGMSLAQ 126
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ S N I + L K +F + +N+ + L A
Sbjct: 127 LSAATLQYSDNTAMNKILDYLGGPAKVTQFARSINDVTYRLDRKEPELNTAIHGDPRDTT 186
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF-TCA 223
+ L D Q+ ++ A G KTG
Sbjct: 187 SPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTTGDHSIKAGLPKHWIVGDKTGSGDYG 246
Query: 224 SGFNIVASAIQGDQSLIAVI 243
+ +I + LI V+
Sbjct: 247 TTNDIAVIWPKNHAPLILVV 266
>gi|322691771|ref|YP_004221341.1| hypothetical protein BLLJ_1582 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320456627|dbj|BAJ67249.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 496
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
S + L A+ +++ G V AE+ + P PAS K +TA
Sbjct: 92 ASALVNELLSAQGVGNDTSVIIEDAQGTVAAEHESNTPREPASTLKTLTALAA 144
>gi|312133971|ref|YP_004001310.1| dacb [Bifidobacterium longum subsp. longum BBMN68]
gi|311773270|gb|ADQ02758.1| DacB [Bifidobacterium longum subsp. longum BBMN68]
Length = 496
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
S + L A+ +++ G V AE+ + P PAS K +TA
Sbjct: 92 ASALVNELLSAQGVGNDTSVIIEDAQGTVAAEHESNTPREPASTLKTLTALAA 144
>gi|291516362|emb|CBK69978.1| D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family
[Bifidobacterium longum subsp. longum F8]
Length = 496
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
S + L A+ +++ G V AE+ + P PAS K +TA
Sbjct: 92 ASALVNELLSAQGVGNDTSVIIEDAQGTVAAEHESNTPREPASTLKTLTALAA 144
>gi|260914819|gb|ACX54270.1| beta-lactamase blaCTX-M-5 [Salmonella enterica]
gi|260914822|gb|ACX54272.1| beta-lactamase blaCTX-M-5 [Salmonella enterica]
Length = 229
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 7/111 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
TMTL + S N + L + +++LG
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHL-----GGPDKVTAFARSLG 159
>gi|227546575|ref|ZP_03976624.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|227212892|gb|EEI80771.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[Bifidobacterium longum subsp. infantis ATCC 55813]
Length = 496
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
S + L A+ +++ G V AE+ + P PAS K +TA
Sbjct: 92 ASALVNELLSAQGVGNDTSVIIEDAQGTVAAEHESNTPREPASTLKTLTALAA 144
>gi|213691451|ref|YP_002322037.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bifidobacterium longum subsp. infantis ATCC 15697]
gi|213522912|gb|ACJ51659.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bifidobacterium longum subsp. infantis ATCC 15697]
gi|320457523|dbj|BAJ68144.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 496
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
S + L A+ +++ G V AE+ + P PAS K +TA
Sbjct: 92 ASALVNELLSAQGVGNDTSVIIEDAQGTVAAEHESNTPREPASTLKTLTALAA 144
>gi|206564002|ref|YP_002234765.1| putative beta-lactamase [Burkholderia cenocepacia J2315]
gi|198040042|emb|CAR56023.1| putative beta-lactamase, class A [Burkholderia cenocepacia J2315]
Length = 312
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 40/226 (17%), Positives = 67/226 (29%), Gaps = 5/226 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT +G VI E+ + S K M + V + E+ +L +T +K
Sbjct: 73 IDTASGRVI-EHRAGERFPFCSTFKAMLSAAVLAQSVERPGLLQQRVTYTKADLVNYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
S G+ MT+ + I S N A + + + + + + + L T
Sbjct: 132 SEKHVGAGMTVAALCEATIQYSDNSAANLLMKLIGGPSAVTAYARSIGDDAFRLDRWETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A + D Q+ K A
Sbjct: 192 LNTALPGDPRDTTTPAAMAASIRVLTLGDALPAAQRAQLVAWLRGNKVGDKRIRAGVPAG 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDR-NTRNKV 255
G KTG N + ++ + R + R K
Sbjct: 252 WVVGDKTGTGDYGTTNDAGVIWPTSRAPIVLAVYYTQTRADARAKD 297
>gi|46190492|ref|ZP_00121461.2| COG2027: D-alanyl-D-alanine carboxypeptidase (penicillin-binding
protein 4) [Bifidobacterium longum DJO10A]
gi|189440707|ref|YP_001955788.1| D-alanyl-D-alanine carboxypeptidase [Bifidobacterium longum DJO10A]
gi|189429142|gb|ACD99290.1| D-alanyl-D-alanine carboxypeptidase [Bifidobacterium longum DJO10A]
Length = 496
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
S + L A+ +++ G V AE+ + P PAS K +TA
Sbjct: 92 ASALVNELLSAQGVGNDTSVIIEDAQGTVAAEHESNTPREPASTLKTLTALAA 144
>gi|302868686|ref|YP_003837323.1| beta-lactamase [Micromonospora aurantiaca ATCC 27029]
gi|302571545|gb|ADL47747.1| beta-lactamase [Micromonospora aurantiaca ATCC 27029]
Length = 436
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + S+TK MTA +V + L P
Sbjct: 50 DGDLQYRVGSITKTMTAVLVMQQRDAGRLALDDP 83
>gi|219986600|gb|ACL68649.1| beta-lactamase [Burkholderia stabilis]
Length = 229
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT +G + E+ P+ + S K M + V + E+ +L +T SK
Sbjct: 50 IDTASGRI-VEHRPNERFPFCSTFKAMLSAAVLAQSVERPGLLQQRVTYSKADLVNYSPV 108
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIA 124
+ + MT+ + I S N A +
Sbjct: 109 TEKHVDTGMTVAAMCEAAIQYSDNSAANLLM 139
>gi|332002539|gb|AED99300.1| class A extended-spectrum beta-lactamase GES-1 [Pseudomonas
aeruginosa]
Length = 265
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 32 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 90
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 91 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 145
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 146 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 205
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 206 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 244
>gi|206601279|gb|ACI16358.1| beta-lactamse [Enterobacter aerogenes]
Length = 235
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 27/216 (12%), Positives = 56/216 (25%), Gaps = 14/216 (6%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98
G V++ + + + S K++ + + + L IT +K+ + ++
Sbjct: 1 GKVLSSHRREERFPMMSTFKVLLCGAILVRVDKGLEQLERRITYNKHDLDDYSPLTSQHI 60
Query: 99 GSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
MT+ I S N A + ++ E + L
Sbjct: 61 ADGMTVSELCNAAITTSDNTAANLLLSTIGGPEGLTHFLRSTGDSYTRLDRHEPSLNEAK 120
Query: 159 VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGM 216
TT + + + + K + +
Sbjct: 121 PGDERDTTTPAAMAQTLQKLLNESVLTEKSRKKLISWMQEDKVGGPLFRSVLPAGWMIAD 180
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTR 252
KTG A I +LG + +R
Sbjct: 181 KTG------------AGDHGSRGIVALLGPGGKPSR 204
>gi|84180547|gb|ABC54715.1| GES-1 extended-spectrum beta-lactamase [Pseudomonas aeruginosa]
Length = 265
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 23 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 81
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 82 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 136
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 137 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 196
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 197 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 235
>gi|302035315|ref|YP_003799986.1| extended-spectrum beta-lactamase GES-1 [Escherichia coli]
gi|196049619|pdb|2QPN|A Chain A, Ges-1 Beta-Lactamase
gi|196049620|pdb|2QPN|B Chain B, Ges-1 Beta-Lactamase
gi|6752461|gb|AAF27723.1|AF156486_2 beta-lactamase GES-1 [Klebsiella pneumoniae]
gi|18958402|gb|AAL82589.1|AF355189_3 beta-lactamase GES-1 [Pseudomonas aeruginosa]
gi|28207198|gb|AAO32356.1| GES-1 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
gi|89515720|gb|ABD75719.1| GES-1 extended-spectrum beta-lactamase [Pseudomonas aeruginosa]
gi|185178493|gb|ACC77587.1| beta-lactamase GES-1 [Pseudomonas aeruginosa]
gi|255039696|gb|ACT99626.1| GES-1 [Pseudomonas aeruginosa]
gi|262234437|gb|ACY39222.1| GES-1 [Escherichia coli]
gi|294769318|gb|ADF36547.1| metallo-beta-lactamase blaGES-1 [Pseudomonas aeruginosa]
gi|297341434|gb|ADI33308.1| beta-lactamase GES-1 [Pseudomonas aeruginosa]
gi|307949946|gb|ADN96169.1| beta-lactamase blaGES-1 [Acinetobacter baumannii]
gi|323709085|gb|ADY02561.1| GES-1 extended-spectrum beta-lactamase [Aeromonas media]
Length = 287
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|291612655|ref|YP_003522812.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Sideroxydans lithotrophicus ES-1]
gi|291582767|gb|ADE10425.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Sideroxydans lithotrophicus ES-1]
Length = 494
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 14/79 (17%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK-------LPYYTLLDTNTGHV-----IAENYPD 48
M++ + + + N+ A + ++ V +
Sbjct: 1 MKRPYAALLLCLAVNVHAASLPATVVQELKNAHIPRSGIAVEVR--EVGKHAPLISINAQ 58
Query: 49 HPWNPASLTKLMTAYVVFS 67
P NPAS KL+T Y
Sbjct: 59 RPMNPASTMKLLTTYSSLD 77
>gi|239929773|ref|ZP_04686726.1| hypothetical protein SghaA1_16220 [Streptomyces ghanaensis ATCC
14672]
gi|291438099|ref|ZP_06577489.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
gi|291340994|gb|EFE67950.1| D-alanyl-D-alanine carboxypeptidase [Streptomyces ghanaensis ATCC
14672]
Length = 362
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
++D +G + PAS TK+ TA S L +
Sbjct: 1 MVDVASGKRLYGTGSGDALVPASTTKIATAVAALSALGPEH 41
>gi|238058429|gb|ACR39368.1| extended-spectrum beta-lactamase [Acinetobacter baumannii]
gi|240114398|gb|ACS44714.1| GES-11 [Acinetobacter baumannii]
gi|310769857|gb|ADP21503.1| GES-11 [Acinetobacter baumannii]
Length = 287
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 53/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGARNDIGFFKAQERDYAVAV 255
>gi|329910020|ref|ZP_08275199.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium
IMCC9480]
gi|327546300|gb|EGF31325.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacteraceae bacterium
IMCC9480]
Length = 461
Score = 38.8 bits (88), Expect = 1.1, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 14 SNIFPFLSIAETNK--LPYYT---LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ + ++ A P ++D +G + + P NPAS KL+T
Sbjct: 13 AGLPAPVAAAFKRAGIAPSGIGIEVVDMASGRNVLSLNSELPLNPASTMKLLTTSAALD 71
>gi|294498248|ref|YP_003561948.1| hypothetical protein BMQ_1482 [Bacillus megaterium QM B1551]
gi|294348185|gb|ADE68514.1| conserved hypothetical protein [Bacillus megaterium QM B1551]
Length = 259
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 37/205 (18%), Positives = 70/205 (34%), Gaps = 13/205 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP-ITISKNASEYPPSNSTFKKGSTMTL 104
AS KL+ A F + E LT+ + KN + + + +
Sbjct: 37 NSFIQQRAASTIKLLLAIEAFRQIDEGILALTSVIQRMEKNTVGGAGILRALPRLTHIKV 96
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG-----VV 159
+ L L+I+ S N + + + +N +KNLGL T
Sbjct: 97 EELLTLMIIVSDNTATNELISLV------GFEKINECAKNLGLKKTVLNRYMMDEIAVEK 150
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+YT A D+ I + ++ +++ + A KTG
Sbjct: 151 GIDNYTCASDVVKCLREIYEGNLLQKSSREKIMRMLEMQQFQHKLPARIGSAFQAANKTG 210
Query: 220 FTCASGFNIVASAIQGDQSLIAVIL 244
+ + A ++G+++ AV+L
Sbjct: 211 ELQGAEHD-SAILMRGNETYYAVVL 234
>gi|13310177|gb|AAK18183.1| beta-lactamase IBC-2 [Pseudomonas aeruginosa]
Length = 287
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 30/219 (13%), Positives = 55/219 (25%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A +L + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQLAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|126149279|dbj|BAF47412.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 214
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G + + D + S K + A V + A+L + +
Sbjct: 35 LLDTGSGRRL-GHRQDERFPLCSTFKSVLAATVLKQAERDPALLDQRLPVRAQDILEHAP 93
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ G +T+ + + ++ S N A + ++
Sbjct: 94 VTRRHVGKDLTVRDLCRATLITSDNTAANLLFAAIGGPPA 133
>gi|126149277|dbj|BAF47411.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 207
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G + + D + S K + A V + A+L + +
Sbjct: 30 LLDTGSGRRL-GHRQDERFPLCSTFKSVLAATVLKQAERDPALLDQRLPVRAQDILEHAP 88
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ G +T+ + + ++ S N A + ++
Sbjct: 89 VTRRHVGKDLTVRDLCRATLITSDNTAANLLFAAIGGPPA 128
>gi|74474882|dbj|BAE44429.1| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 219
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 1/100 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
LLDT +G + + D + S K + A V + A+L + +
Sbjct: 51 LLDTGSGRRL-GHRQDERFPLCSTFKSVLAATVLKQAERDPALLDQRLPVRAQDILEHAP 109
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
+ G +T+ + + ++ S N A + ++
Sbjct: 110 VTRRHVGKDLTVRDLCRATLITSDNTAANLLFAAIGGPPA 149
>gi|56808857|ref|ZP_00366568.1| COG2367: Beta-lactamase class A [Streptococcus pyogenes M49 591]
Length = 428
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 24/204 (11%), Positives = 55/204 (26%), Gaps = 13/204 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--------FK 97
D AS++KL Y+V L++K+ +T +K+ + +
Sbjct: 222 NADKKMYAASISKLAPLYIVQKQLQKKELAENKTLTYTKDVNHFYGDYDPLGSGKISKIP 281
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+++ LK + +S N + LC K + +
Sbjct: 282 DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAFRSEIKALSGIDWDM-----EQR 336
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++ + + + Q + + + + +
Sbjct: 337 LLTSRSAANMMEAIYHQKGQIISYLSNTEFDQQRITKNITVPVAHKIGDAYDYKHDVAIV 396
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
G T + D + IA
Sbjct: 397 YGNTPFILSIFTNKSTYEDITAIA 420
>gi|302552013|ref|ZP_07304355.1| penicillin-binding protein transpeptidase [Streptomyces
viridochromogenes DSM 40736]
gi|302469631|gb|EFL32724.1| penicillin-binding protein transpeptidase [Streptomyces
viridochromogenes DSM 40736]
Length = 543
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 40/152 (26%), Gaps = 20/152 (13%)
Query: 13 LSNIFPFLSIAETNKL------PYYTLLDTNTGHVIA-------ENYP--DHPWNPASLT 57
L+ + A K + TG V+A P S
Sbjct: 241 LTTTISPSAQAAAEKAVKRFDESSVVAVKPTTGEVLAVANNRTDGFNAAFQGQAAPGSTM 300
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K+MTA ++ + P +A +G + L ++S N
Sbjct: 301 KIMTAAMLIDN---GVTSMNGPAPCPSDAMWQ-GQTFKNLQGMKPDENATLAGSFMRSCN 356
Query: 118 DIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+ + + T+ + LG
Sbjct: 357 TAFIKLIDEKPLTDASLTEEAEERF-GLGRDN 387
>gi|284050950|ref|ZP_06381160.1| hypothetical protein AplaP_05683 [Arthrospira platensis str.
Paraca]
Length = 449
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 3/200 (1%)
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
P +PASL K+ A + E++ I + S+ + + +L +
Sbjct: 230 PASPASLIKVPVAIALLHKAAEEQVSFDKEIYVEGGNFTEDASS--IRARKSYSLQMLMA 287
Query: 110 LLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+I S+N + + K ++ + G +
Sbjct: 288 QMIDHSSNIATNQLIDYLGSDYINKLLERHGYKQTRVQFKLMGDRIMPFRPGRGRNSMTS 347
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
D ++ I+ L + + G G KTG
Sbjct: 348 DELTEMMVEIYNYEHPHSELLIEALSHQYDREIGYQALQGLKAQWLGEKTGQNSRVIGTT 407
Query: 229 VASAIQGDQSLIAVILGALD 248
+A++I G++ +I + +
Sbjct: 408 LAASIDGERYIITITDNSAG 427
>gi|225350937|ref|ZP_03741960.1| hypothetical protein BIFPSEUDO_02512 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158393|gb|EEG71635.1| hypothetical protein BIFPSEUDO_02512 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 481
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A A + I F + A Y + G+V+AE+ D + PAS K +TAY V +
Sbjct: 79 AAAAKALISQFETAASDFGDEYAIAIADAAGNVVAEHALDKSYTPASTMKTLTAYAVATT 138
Query: 69 LKEK 72
L
Sbjct: 139 LDMG 142
>gi|224814398|gb|ACN65419.1| beta-lactamase [Klebsiella pneumoniae]
Length = 281
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 37/276 (13%), Positives = 69/276 (25%), Gaps = 22/276 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPY-------YTLLDTNTGHVIAENYPDH 49
MR + + + + + + Y +D +A
Sbjct: 1 MRYVRLCLFSLIAALPLAVFASPPPLEQITRSESQLAGRVGYVEMDL-----LAAWRASE 55
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
+ S K++ V + + L I + S MT+
Sbjct: 56 RFPLMSTFKVLLCGAVLARVDAGDEQLDRRIRYRQQDLVDYSPVSEKHLADGMTVGELCA 115
Query: 110 LLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
I S N + + F++ + + L T A T A
Sbjct: 116 AAITMSDNSAGNLLLKSVGGPAGLTAFLRQIGDNVTRLDRWETELNEALPGDVRDTTTPA 175
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
A L + + Q+ + + AV KTG
Sbjct: 176 SMAATLRKLLTSHTLSARSQQQLLQWMVDDQVAGPLIRAVLPAGWFIADKTGAGERGSRG 235
Query: 228 IVASAIQGDQ--SLIAVILGAL--DRNTRNKVSASL 259
IVA + ++ + L RN+ A +
Sbjct: 236 IVALLGPNGKAERIVVIYLRDTPATMAERNQQIARI 271
>gi|212716398|ref|ZP_03324526.1| hypothetical protein BIFCAT_01321 [Bifidobacterium catenulatum DSM
16992]
gi|212660651|gb|EEB21226.1| hypothetical protein BIFCAT_01321 [Bifidobacterium catenulatum DSM
16992]
Length = 481
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
A A + I F + A Y + G+V+AE+ D + PAS K +TAY V +
Sbjct: 79 AAAAKALISQFETAASDFGDEYAIAIADAAGNVVAEHALDKSYTPASTMKTLTAYAVATT 138
Query: 69 LKEK 72
L
Sbjct: 139 LDMG 142
>gi|319654718|ref|ZP_08008797.1| hypothetical protein HMPREF1013_05419 [Bacillus sp. 2_A_57_CT2]
gi|317393634|gb|EFV74393.1| hypothetical protein HMPREF1013_05419 [Bacillus sp. 2_A_57_CT2]
Length = 261
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 65/207 (31%), Gaps = 13/207 (6%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTM 102
E D + ASL K+ S + L + KG M
Sbjct: 33 ETNADDVISSASLIKVPILLAGLSQAENALLDLNEEAEVKDAARVGGAGVLQAMSKGLKM 92
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ-- 160
+ + + L+++ S N I E L ++ +N K+LG + T +
Sbjct: 93 KVIDLMTLMVIVSDNTATNLIIERL------GIEKINQFIKSLGFNCTELNRKMMDFEAL 146
Query: 161 ---HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD-GM 216
+ TTARDM + + + + ++ ++Y N
Sbjct: 147 KNGMDNTTTARDMVYGMKALAENSLLSGKFTEKALDILEKQQYKNKLANTMDTEKVKVAS 206
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVI 243
KTG + +G+ AV+
Sbjct: 207 KTGELPGIEHDCAIFTHKGNTVYAAVL 233
>gi|86160920|gb|ABC86901.1| beta-lactamase [Photobacterium leiognathi]
Length = 294
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 37/271 (13%), Positives = 78/271 (28%), Gaps = 8/271 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+++A + + +L+ N G + + + S K +
Sbjct: 24 FSAMSVASTNIDSAIKHAEQQLGAKVGVSVLNAN-GDSLYGYNSEQRFPLMSTFKTLACA 82
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + K M+ ++ +A K G+ ++L +A + S N A +
Sbjct: 83 KLLHDNQITKGMMDKTYPVTADAILDYAPVFKDKIGTEVSLKDACFATMTTSDNSAANFV 142
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFP 182
+ E ++N+ L + TT M ++
Sbjct: 143 LAHIGGAEGVTKFLIDNSDNVTRLDRIEPLLNEATPGDKRDTTTPYAMNETITKLVLGDA 202
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD-GMKTGFTCASGFNIVASAIQGDQS--L 239
+K K N + G + ++G I A + +
Sbjct: 203 LNPASKAQLTEWMKANKVSNGLFRSVLPQGWEIADRSGAGGYGSRGITAVVWNEQKQPLV 262
Query: 240 IAVILGAL--DRNTRNKVSASLLSMGFYNKT 268
I+V L R+K A + + F T
Sbjct: 263 ISVYLTGTEVSIPERDKEIAKIGNAIFERYT 293
>gi|319954232|ref|YP_004165499.1| peptidase s13 d-ala-d-ala carboxypeptidase c [Cellulophaga
algicola DSM 14237]
gi|319422892|gb|ADV50001.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cellulophaga
algicola DSM 14237]
Length = 423
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 16/82 (19%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY---------------TLLDTNTGHVIAEN 45
MR+ I+++ + + + + D I +
Sbjct: 1 MRRIF-ILSLITSLLYSCATTKIKKIRKETAQMLTESLFDNQFLGVFIYDPLNNDTILKY 59
Query: 46 YPDHPWNPASLTKLMTAYVVFS 67
+ + PAS TK+ T Y V
Sbjct: 60 NSEKYFTPASTTKIATLYTVLK 81
>gi|116620153|ref|YP_822309.1| D-alanyl-D-alanine carboxypeptidase [Candidatus Solibacter
usitatus Ellin6076]
gi|116223315|gb|ABJ82024.1| D-Ala-D-Ala carboxypeptidase. Serine peptidase. MEROPS family S13
[Candidatus Solibacter usitatus Ellin6076]
Length = 502
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++D +G + E PDH + PAS KL + +
Sbjct: 49 IVDLASGKTLYELNPDHYFVPASNAKLFSTALAL 82
>gi|260161322|emb|CBG22732.1| extended spectrum beta-lactamase [Acinetobacter baumannii]
gi|310769861|gb|ADP21506.1| GES-12 [Acinetobacter baumannii]
Length = 287
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 53/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVEWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGACANGARNDIGFFKAQERDYAVAV 255
>gi|227502054|ref|ZP_03932103.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium accolens ATCC
49725]
gi|227077209|gb|EEI15172.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium accolens ATCC
49725]
Length = 451
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKL 59
++D+ TG V+ E D PAS TK+
Sbjct: 107 VIDSETGTVVWERAADKALTPASSTKV 133
>gi|218439342|ref|YP_002377671.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cyanothece sp. PCC
7424]
gi|218172070|gb|ACK70803.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cyanothece sp. PCC
7424]
Length = 296
Score = 38.8 bits (88), Expect = 1.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
G VI + D + PAS TKL T
Sbjct: 92 GTVIYSHNADKFFIPASNTKLFTTAAALHK 121
>gi|301307822|ref|ZP_07213778.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 20_3]
gi|300834165|gb|EFK64779.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 20_3]
Length = 485
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWNPASL 56
F +I + + I + + P + + N+G + PAS+
Sbjct: 8 FFLISCLYLSVGAQTPQPIKQFLRKPYMEGASFSLIVKEVNSGETVFAYDTIRQLTPASV 67
Query: 57 TKLMTAYVVFS 67
K +T
Sbjct: 68 MKTVTTATALE 78
>gi|298374298|ref|ZP_06984256.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 3_1_19]
gi|298268666|gb|EFI10321.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 3_1_19]
Length = 485
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWNPASL 56
F +I + + I + + P + + N+G + PAS+
Sbjct: 8 FFLISCLYLSVGAQTPQPIKQFLRKPYMEGASFSLIVKEVNSGETVFAYDTIRQLTPASV 67
Query: 57 TKLMTAYVVFS 67
K +T
Sbjct: 68 MKTVTTATALE 78
>gi|262382755|ref|ZP_06075892.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 2_1_33B]
gi|262295633|gb|EEY83564.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 2_1_33B]
Length = 483
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWNPASL 56
F +I + + I + + P + + N+G + PAS+
Sbjct: 8 FFLISCLYLSVGAQTPQPIKQFLRKPYMEGASFSLIVKEVNSGETVFAYDTIRQLTPASV 67
Query: 57 TKLMTAYVVFS 67
K +T
Sbjct: 68 MKTVTTATALE 78
>gi|256838717|ref|ZP_05544227.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Parabacteroides sp. D13]
gi|256739636|gb|EEU52960.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Parabacteroides sp. D13]
Length = 485
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP-------YYTLLDTNTGHVIAENYPDHPWNPASL 56
F +I + + I + + P + + N+G + PAS+
Sbjct: 8 FFLISCLYLSVGAQTPQPIKQFLRKPYMEGASFSLIVKEVNSGETVFAYDTIRQLTPASV 67
Query: 57 TKLMTAYVVFS 67
K +T
Sbjct: 68 MKTVTTATALE 78
>gi|209558596|ref|YP_002285068.1| hypothetical protein Spy49_0010 [Streptococcus pyogenes NZ131]
gi|209539797|gb|ACI60373.1| hypothetical protein Spy49_0010 [Streptococcus pyogenes NZ131]
Length = 428
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 25/204 (12%), Positives = 55/204 (26%), Gaps = 13/204 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--------FK 97
D AS++KL Y+V L++KK +T +K+ + +
Sbjct: 222 NADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTKDVNHFYGDYDPLGSGKISKIP 281
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+++ LK + +S N + LC K + +
Sbjct: 282 DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAFRSEIKALSGIDWDM-----EQR 336
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++ + + + Q + + + + +
Sbjct: 337 LLTSRSAANMMEAIYHQKGQIISYLSNTEFDQQRITKNITVPVAHKIGDAYDYKHDVAIV 396
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
G T + D + IA
Sbjct: 397 YGNTPFILSIFTNKSTYEDITAIA 420
>gi|260914816|gb|ACX54268.1| beta-lactamase blaCTX-M-5 [Salmonella enterica]
Length = 226
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 7/111 (6%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K +L + I K+ +
Sbjct: 56 ADNSQILY--RADERFAMCSTSKVMAAAAVLKQSESDKHLLNQRVEIKKSDLVNYNPIAE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
TMTL + S N + L + +++LG
Sbjct: 114 KHVNGTMTLAELGAAALQYSDNTAMNKLIAHL-----GGPDKVTAFARSLG 159
>gi|13096333|pdb|1DY6|A Chain A, Structure Of The Imipenem-Hydrolyzing Beta-Lactamase Sme-1
gi|13096334|pdb|1DY6|B Chain B, Structure Of The Imipenem-Hydrolyzing Beta-Lactamase Sme-1
Length = 267
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 37/219 (16%), Positives = 59/219 (26%), Gaps = 6/219 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+DT +G+ D + S K A V +++KK + + EY
Sbjct: 22 GVFAIDTGSGNT-FGYRSDERFPLCSSFKGFLAAAVLERVQQKKLDINQKVKYESRDLEY 80
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKN---LG 146
+T KGS MTL + + S N I E + + M + N L
Sbjct: 81 HSPITTKYKGSGMTLGDMASAALQYSDNGATNIIMERFLGGPEGMTKFMRSIGDNEFRLD 140
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
A + T L+ + + A
Sbjct: 141 RWELELNTAIPGDKRDTSTPKAVANSLNKLALGNVLNAKVKAIYQNWLKGNTTGDARIRA 200
Query: 207 VGTFLGADGMKTGF--TCASGFNIVASAIQGDQSLIAVI 243
G KTG + + + LI I
Sbjct: 201 SVPADWVVGDKTGSCGAYGTANDYAVIWPKNRAPLIVSI 239
>gi|291439642|ref|ZP_06579032.1| D-stereospecific endopeptidase [Streptomyces ghanaensis ATCC 14672]
gi|291342537|gb|EFE69493.1| D-stereospecific endopeptidase [Streptomyces ghanaensis ATCC 14672]
Length = 387
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ D TG E P + S+TK A V+ E + L +
Sbjct: 71 SATAGVGDLRTGQ---ERSPHDRYRIGSVTKTFVATVLLQLEAEGRLSLDDTVDTW 123
>gi|289766973|ref|ZP_06526351.1| beta-lactamase [Streptomyces lividans TK24]
gi|289697172|gb|EFD64601.1| beta-lactamase [Streptomyces lividans TK24]
Length = 405
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ D +TG + D S+TK TA V +++ + L
Sbjct: 72 AAGVADVDTGRPVT---ADLRHRVGSITKTFTAAAVLQQVEQGRIGLD 116
>gi|317129303|ref|YP_004095585.1| stage V sporulation protein D [Bacillus cellulosilyticus DSM 2522]
gi|315474251|gb|ADU30854.1| stage V sporulation protein D [Bacillus cellulosilyticus DSM 2522]
Length = 645
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 25/108 (23%), Gaps = 25/108 (23%)
Query: 31 YTLLDTNTGHVI-------AE-----------NYPDHP----WNPASLTKLMTAYVVFSF 68
+D NTG ++ + + P + P S K++T
Sbjct: 249 AIAMDPNTGEILGMSSRPDYDPERFREVPPEIYNQNKPVWSQYEPGSTFKIITLAAALEE 308
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
L E N K L+++
Sbjct: 309 ---GIVDLDEDEFFDPGYVEVAGQNIRCWKKGGHGSQTYLEVVQNSCN 353
>gi|256783090|ref|ZP_05521521.1| hydrolase [Streptomyces lividans TK24]
Length = 372
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ D +TG + D S+TK TA V +++ + L
Sbjct: 39 AAGVADVDTGRPVT---ADLRHRVGSITKTFTAAAVLQQVEQGRIGLD 83
>gi|239931270|ref|ZP_04688223.1| D-stereospecific peptide hydrolase precursor [Streptomyces
ghanaensis ATCC 14672]
Length = 383
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ D TG E P + S+TK A V+ E + L +
Sbjct: 67 SATAGVGDLRTGQ---ERSPHDRYRIGSVTKTFVATVLLQLEAEGRLSLDDTVDTW 119
>gi|323492031|ref|ZP_08097196.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Vibrio
brasiliensis LMG 20546]
gi|323313760|gb|EGA66859.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Vibrio
brasiliensis LMG 20546]
Length = 476
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAE----TNKLPYYTLLDTNTGHVIAEN--YPDHPWNPASLT 57
F+ ++ A + + A +D+ + + + PAS
Sbjct: 6 FISLLVFAATTLSSQVSAYAPLNELPLGSRAALRVDSLQEQQHYQQSANQNQLFPPASTL 65
Query: 58 KLMTAYVV 65
K++TA
Sbjct: 66 KIVTALAA 73
>gi|40888718|gb|AAR97271.1| class A beta-lactamase [Klebsiella pneumoniae]
Length = 287
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVKWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMSDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|60416719|emb|CAI43424.1| beta-lactamase [Klebsiella oxytoca]
Length = 291
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 38/234 (16%), Positives = 65/234 (27%), Gaps = 11/234 (4%)
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99
+ D + S K+M A V + ++ + I K+ +
Sbjct: 60 QTLY--RGDERFAMCSTGKVMAAAAVLKQSESHPDVVNKRLEIKKSDLVVWSPITEKHLQ 117
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHG 157
S MTL + S N + L EK F Q + + + L + +A
Sbjct: 118 SGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALNSAIP 177
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
+ T L + Q+ + A A G K
Sbjct: 178 GDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWAVGDK 237
Query: 218 TGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
TG N +A + L+ V A R +A +++ G
Sbjct: 238 TGAGDYGTTNDIAVIWPENHAPLVLVTYFTQPQQDAKSRKEVLAAAAKIVTEGL 291
>gi|15966291|ref|NP_386644.1| putative beta-lactamase precursor protein [Sinorhizobium meliloti
1021]
gi|15075562|emb|CAC47117.1| Putative beta-lactamase precursor protein [Sinorhizobium meliloti
1021]
Length = 278
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 5/120 (4%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
+ + TG I E D AS K + E + L P I+ A
Sbjct: 19 VVRNLKTGETI-ERGADEETPSASTRKTSIMMAALKAVHEGRLALDEP--ITYEARFAEE 75
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
S + T + +L+ I + + + ++ +++ K++G+ TH
Sbjct: 76 VASGMFRYLTPGIVISLRDAITGMMVLSDNVCTKMVFERL--TLEEVDSYCKSIGMHGTH 133
>gi|299137108|ref|ZP_07030291.1| beta-lactamase [Acidobacterium sp. MP5ACTX8]
gi|298601623|gb|EFI57778.1| beta-lactamase [Acidobacterium sp. MP5ACTX8]
Length = 293
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 44/154 (28%), Gaps = 18/154 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAEN-----------YPDH 49
MR ++ + P ++ A ++ D + G V P
Sbjct: 1 MRPLSFLVLFTLT---APLIAQAPLHQQLATIAKDAH-GQVFVACSLPGVALDCNLNPHG 56
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI--SKNASEYPPSNSTFKKGSTMTLDNA 107
S KL A + ++ K L PI S + + +
Sbjct: 57 HPPMQSTFKLPLAVALLQQVERGKLKLDQPIRFLPSDRYPGTYSPLQDAHPEANVDVPLH 116
Query: 108 -LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
L L V +++ A I L + + MN
Sbjct: 117 DLLQLSVGESDNTATDILLRLIGGPQAVQESMNK 150
>gi|226228615|ref|YP_002762721.1| putative beta-lactamase precursor [Gemmatimonas aurantiaca T-27]
gi|226091806|dbj|BAH40251.1| putative beta-lactamase precursor [Gemmatimonas aurantiaca T-27]
Length = 304
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 28/179 (15%)
Query: 1 MRQF---LVIIAMAMLSNIFPFLSIAETNKLPY-----------------YTLLDTNTGH 40
MR I+ A+L + P + A Y++ + TG
Sbjct: 1 MRLLPALAAILIGALLVSASPASAQAVRPGPTSLRRVIDSLADAHRGVVGYSITNLETGE 60
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKG 99
+ E D + ASL K+ +F ++K+ L PI +++ + +
Sbjct: 61 HL-ERRGDETFTTASLIKVPVLVALFDLAEQKQLTLDDPIVLTEIDKVGGAGQLQFLRTP 119
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
T+ L + L+ S N + + + ++ + + LGL T +
Sbjct: 120 LTLRLWDVAWLMTTLSDNTATNLVLDRIK------IRRVWQKMEALGLPHTKVHSGSMT 172
>gi|229494573|ref|ZP_04388336.1| beta-lactamase family protein/peptidase S9 domain protein
[Rhodococcus erythropolis SK121]
gi|229318935|gb|EEN84793.1| beta-lactamase family protein/peptidase S9 domain protein
[Rhodococcus erythropolis SK121]
Length = 1122
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+++ +TG E D + S+TK+ TA +V + E L
Sbjct: 708 VINADTG---VEVSTDSLFQIGSITKVWTAMLVMQLVDEGLLDLDAT 751
>gi|226304510|ref|YP_002764468.1| S9 family peptidase [Rhodococcus erythropolis PR4]
gi|226183625|dbj|BAH31729.1| putative S9 family peptidase [Rhodococcus erythropolis PR4]
Length = 1122
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+++ +TG E D + S+TK+ TA +V + E L
Sbjct: 708 VINADTG---VEVSTDSLFQIGSITKVWTAMLVMQLVDEGLLDLDAT 751
>gi|54023728|ref|YP_117970.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152]
gi|54015236|dbj|BAD56606.1| putative penicillin-binding protein [Nocardia farcinica IFM 10152]
Length = 629
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 25/79 (31%)
Query: 26 NKLPYYTLLDTNTGHVIAENYPDH----------------------PWNPASLTKLMTAY 63
+ +LD TG V+A + P+ P S+ K++TA
Sbjct: 283 AEGASAVVLDAKTGQVLAMANDNTFNPALGPQSWGSANTNNPSVSDPFEPGSVNKIVTAA 342
Query: 64 VVFSFLKEKKAMLTTPITI 82
+ +
Sbjct: 343 AAIEY---GLTNPDEVHQV 358
>gi|317482118|ref|ZP_07941142.1| D-Ala-D-Ala carboxypeptidase 3 family protein [Bifidobacterium sp.
12_1_47BFAA]
gi|316916477|gb|EFV37875.1| D-Ala-D-Ala carboxypeptidase 3 family protein [Bifidobacterium sp.
12_1_47BFAA]
Length = 496
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+++ G V AE+ + P PAS K +TA
Sbjct: 109 ASVIIEDAQGTVAAEHESNTPREPASTLKTLTALAA 144
>gi|218245734|ref|YP_002371105.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cyanothece sp. PCC
8801]
gi|218166212|gb|ACK64949.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cyanothece sp. PCC
8801]
Length = 293
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFS 67
G + + PD + PAS TKL T
Sbjct: 89 GTTLYSHNPDKFFIPASNTKLFTTAAALQ 117
>gi|116620436|ref|YP_822592.1| beta-lactamase [Candidatus Solibacter usitatus Ellin6076]
gi|116223598|gb|ABJ82307.1| beta-lactamase [Candidatus Solibacter usitatus Ellin6076]
Length = 342
Score = 38.8 bits (88), Expect = 1.3, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 13/89 (14%)
Query: 1 MRQFLVIIAMAMLSNI-----FPFLSIAETNKLPYYTLLDTNTGHVIAEN------YPDH 49
+R V I A+L A +LD G + +
Sbjct: 3 LRALAVAILPALLCGADLDSTIAERMQALKVPAVSVAVLDG--GKPLWARGYGAGVNAET 60
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ ASL+K + A + E K L
Sbjct: 61 VFQAASLSKHVAALIALRLADEGKLSLDE 89
>gi|257058780|ref|YP_003136668.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cyanothece sp. PCC
8802]
gi|256588946|gb|ACU99832.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Cyanothece sp. PCC
8802]
Length = 293
Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFS 67
G + + PD + PAS TKL T
Sbjct: 89 GTTLYSHNPDKFFIPASNTKLFTTAAALQ 117
>gi|166368064|ref|YP_001660337.1| D-alanyl-D-alanine carboxypeptidase [Microcystis aeruginosa
NIES-843]
gi|166090437|dbj|BAG05145.1| D-alanyl-D-alanine carboxypeptidase [Microcystis aeruginosa
NIES-843]
Length = 295
Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKA----MLTTPITISKN 85
+D T VI + D + PAS TKL T + + L + I+
Sbjct: 86 IDRQT--VIYSHNADRYFIPASNTKLFTTAAALQVMNPETTIQKKSLRDWVNITNQ 139
>gi|162148955|ref|YP_001603416.1| peptidoglycan synthetase ftsI [Gluconacetobacter diazotrophicus PAl
5]
gi|209545292|ref|YP_002277521.1| peptidoglycan glycosyltransferase [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787532|emb|CAP57128.1| putative peptidoglycan synthetase ftsI [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532969|gb|ACI52906.1| Peptidoglycan glycosyltransferase [Gluconacetobacter diazotrophicus
PAl 5]
Length = 682
Score = 38.8 bits (88), Expect = 1.4, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 27/134 (20%)
Query: 31 YTLLDTNTGHVI-------AENY------PDHPW--------NPASLTKLMTAYVVFSFL 69
++D NTG +I + PD + P S KL TA +
Sbjct: 265 AIVMDVNTGEIIAMVSLPDYDANDFGRADPDARFNRAVTGMYEPGSTFKLQTAAMAL--- 321
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND-IAVAIAESLC 128
+ A + S + K +L ++ S+N A +
Sbjct: 322 QMGVAHIWDR--FSTIPIHIGRFTISDMKTDHFAPWLSLPGVMAFSSNPAAAHIALDVGA 379
Query: 129 KTEKKFVQHMNNTS 142
+ ++ +++ M S
Sbjct: 380 QRQQDWLRKMGFFS 393
>gi|229815602|ref|ZP_04445929.1| hypothetical protein COLINT_02653 [Collinsella intestinalis DSM
13280]
gi|229808832|gb|EEP44607.1| hypothetical protein COLINT_02653 [Collinsella intestinalis DSM
13280]
Length = 266
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTK 58
Y +L+ G I E+ D + AS K
Sbjct: 60 SYIVLNLENGQTI-EHNADRAYYSASTIK 87
>gi|171778207|ref|ZP_02919436.1| hypothetical protein STRINF_00275 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171283031|gb|EDT48455.1| hypothetical protein STRINF_00275 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 428
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 17/40 (42%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
PD AS+ KL T Y V +++ + + + +
Sbjct: 222 NPDTTMYAASVAKLATLYYVEEKIQDGSVKMDDKLKYTAD 261
>gi|50913356|ref|YP_059328.1| Beta-lactamase [Streptococcus pyogenes MGAS10394]
gi|50902430|gb|AAT86145.1| Beta-lactamase [Streptococcus pyogenes MGAS10394]
Length = 428
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 25/204 (12%), Positives = 55/204 (26%), Gaps = 13/204 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--------FK 97
D AS++KL Y+V L++KK +T +K+ + +
Sbjct: 222 NADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTKDVNHFYGDYDPLGSGKISKIA 281
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+++ LK + +S N + LC K + +
Sbjct: 282 DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAFRSEIKALSGIDWDM-----EQR 336
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++ + + + Q + + + + +
Sbjct: 337 LLTSRSAANMMEAIYHQKGQIISYLSNTEFDQQRITKNITVPVAHKIGDAYDYKHDVAIV 396
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
G T + D + IA
Sbjct: 397 YGNTPFILSIFTNKSNYEDITAIA 420
>gi|254387583|ref|ZP_05002822.1| secreted penicillin binding protein [Streptomyces clavuligerus ATCC
27064]
gi|294815031|ref|ZP_06773674.1| Secreted penicillin binding protein [Streptomyces clavuligerus ATCC
27064]
gi|326443398|ref|ZP_08218132.1| cell division protein FtsI/penicillin-binding protein 2-like
protein [Streptomyces clavuligerus ATCC 27064]
gi|1666696|gb|AAC44561.1| PcbR [Streptomyces clavuligerus ATCC 27064]
gi|197701309|gb|EDY47121.1| secreted penicillin binding protein [Streptomyces clavuligerus ATCC
27064]
gi|294327630|gb|EFG09273.1| Secreted penicillin binding protein [Streptomyces clavuligerus ATCC
27064]
Length = 551
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 17/150 (11%), Positives = 39/150 (26%), Gaps = 17/150 (11%)
Query: 17 FPFLSIAETNKLPYYTL-LDTNTGHVIAENYP--------DHPWNPASLTKLMTAYVVFS 67
+ E +K + +D TG+++A + + P S K++T +
Sbjct: 260 SAAAAALEGSKKNAAIVAVDPATGNILAAANVPSGMNRALEGRYPPGSTFKVVTTAALLQ 319
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+ + + + T+ + + S N S
Sbjct: 320 QGMNPEERAD-----CPKFAHVNGQSFENQDQFTLPAGSTFRDSFAHSCN---TFFVNSR 371
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
K + ++ G G
Sbjct: 372 SKLSESSLKQAAEAFGIGGTWDVGASTFDG 401
>gi|319645533|ref|ZP_07999765.1| DacC protein [Bacillus sp. BT1B_CT2]
gi|317392419|gb|EFV73214.1| DacC protein [Bacillus sp. BT1B_CT2]
Length = 567
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+G +I + D PAS KL+TA +
Sbjct: 310 AESGKMIYGHMGDTRMRPASNLKLLTAAAAY 340
>gi|291571479|dbj|BAI93751.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 449
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 3/200 (1%)
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
P +PASL K+ A + E++ I + S+ + + +L +
Sbjct: 230 PASPASLIKVPVAIALLHKAAEEQVSFDKEIYVEGGNFTEDASS--IRARKSYSLQMLMA 287
Query: 110 LLIVKSANDIAVAIAES-LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
+I S+N + + K ++ + G +
Sbjct: 288 QMIDHSSNIATNQLIDYLGSDYINKLLERHGYKQTRVQFKLMGDRIMPFRPGRGRNSMTS 347
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNI 228
D ++ I+ L + + G G KTG
Sbjct: 348 DELTEMMVEIYNYEHPHSELLIEALSHQYDREIGYQALEGLKAQWLGEKTGQNSRVIGTT 407
Query: 229 VASAIQGDQSLIAVILGALD 248
+A++I G++ +I + +
Sbjct: 408 LAASIDGERYIITITDNSAG 427
>gi|307263611|ref|ZP_07545225.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
gi|306871074|gb|EFN02804.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 13 str. N273]
Length = 480
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ I+ A ++ ++ + + T +I + D PAS K+ TA
Sbjct: 18 ILIPSISFAEINTSGLLTNLPAGASA-SFIAKNLETNQIITQYQSDVFMLPASTQKVFTA 76
Query: 63 YVV 65
Sbjct: 77 LAA 79
>gi|298246520|ref|ZP_06970326.1| glycosyl transferase family 51 [Ktedonobacter racemifer DSM 44963]
gi|297554001|gb|EFH87866.1| glycosyl transferase family 51 [Ktedonobacter racemifer DSM 44963]
Length = 938
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 19/168 (11%), Positives = 39/168 (23%), Gaps = 21/168 (12%)
Query: 25 TNKLPYYTLLDTNTGHVI-------AENY----------PDHPWNPASLTKLMTAYVVFS 67
++D TG ++ E P P S K + F
Sbjct: 497 NVNNASVVVMDPKTGEILAMNGSASYEANYPQVRGQLNGATTPRQPGSSFKPIVYATAFE 556
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
+++ TI + ++ + S N A+
Sbjct: 557 MGWYPAMIVSDHRTIYPVDPPDYYHPQNYDGNFHSDYPMTVRTALANSFNIPAIDAIMFT 616
Query: 128 CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG----HYTTARDMA 171
+ + S+ + L + + + H T A
Sbjct: 617 GVHNVQNMAARLGISEVVNLPDSQTGPSMALGSKEVSLLHMTDAYATF 664
>gi|190150272|ref|YP_001968797.1| penicillin-binding protein 4 precursor [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|189915403|gb|ACE61655.1| penicillin-binding protein 4 precursor [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
Length = 480
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTA 62
+ I+ A ++ ++ + + T +I + D PAS K+ TA
Sbjct: 18 ILIPSISFAEINTSGLLTNLPAGASA-SFIAKNLETNQIITQYQSDVFMLPASTQKVFTA 76
Query: 63 YVV 65
Sbjct: 77 LAA 79
>gi|116073106|ref|ZP_01470368.1| putative beta-lactamase [Synechococcus sp. RS9916]
gi|116068411|gb|EAU74163.1| putative beta-lactamase [Synechococcus sp. RS9916]
Length = 377
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 20/152 (13%), Positives = 41/152 (26%), Gaps = 2/152 (1%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ K+ + L+ + G AE D AS K L
Sbjct: 107 LAAQQADLKVSAFMLV-LDDGR-YAELGADTALPAASSIKTPILLAALERLDAGDLHWNE 164
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
P+T++K K T + +++ +++ A + ++
Sbjct: 165 PLTMTKPLVGGGAGWMANKPVGTRFPTYEVATEMIRISDNTATNLMIERAGGKQAVNIRF 224
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
N + + G AR +
Sbjct: 225 NTLGLSATKINNWLPDLKGTNTTSARDLARAI 256
>gi|311030864|ref|ZP_07708954.1| hypothetical protein Bm3-1_10016 [Bacillus sp. m3-13]
Length = 275
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 6/229 (2%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ ++ +++ G + + ASL K+ F ++ L+
Sbjct: 16 QAVVDSTAGHVSYVIEDGGGQRL-DKDAYVTKKAASLIKIPIMMAAFKQVEAGILSLSDR 74
Query: 80 ITI-SKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL-CKTEKKFVQH 137
+I ++N ++ TL L L+I+ S N + + + F +
Sbjct: 75 YSIDTRNIVSGAGVIQFMDGDTSFTLGELLTLMIIVSDNTATNKVIDIIGWNGVNDFCRE 134
Query: 138 MNNTSKNLGLSATHF-MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
T+ L F A G+ + + + + K L I
Sbjct: 135 QGLTNTKLERKMMDFKATAAGIENRTSALEMIECLKYLHIEDAERAVFSDESRQKMLRIL 194
Query: 197 GKKYPNTNWAVGTFLGADG--MKTGFTCASGFNIVASAIQGDQSLIAVI 243
G + L G KTG + +G++ +AV+
Sbjct: 195 GGQQLLDKLPFYMDLELVGIANKTGELPGVEHDCGIVTYKGEKLFVAVL 243
>gi|300727793|ref|ZP_07061175.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella bryantii B14]
gi|299774946|gb|EFI71556.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella bryantii B14]
Length = 426
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 24/258 (9%), Positives = 57/258 (22%), Gaps = 25/258 (9%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF-LKEKKAMLTTPITISKNASEYP 90
+ D I ++ PAS K++TA + T + +
Sbjct: 83 MVWDLTADSCIYKHNERQLLRPASTMKVITAIAAIDRLGGSFQFKTQLKYTGTIDNHCLN 142
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
++ +K ++ I + ++ N +
Sbjct: 143 GDLYCVGGMDPRFNNDDMKAMVSSLREMGIDTIRGHIYADVS--LKDSNKFGEGWCWDDD 200
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHY---------FQIKGLEIKGKKYP 201
+ + ++ R M+ + + I
Sbjct: 201 NPVLTPLLLGRKDQFMDRFMSKIHEDSIVCSYYTYSNKTCPSEAYTISTRSHSIDQILMR 260
Query: 202 NTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS----- 256
+ + + + + SA ++ L+ + R S
Sbjct: 261 MLKESDNLYAECLFYQMAASTGNRPASAKSARWVEKKLVQKVGLDPSRYKFADGSGLSLY 320
Query: 257 --------ASLLSMGFYN 266
LL F N
Sbjct: 321 NYVSAELEIKLLRYAFNN 338
>gi|315504842|ref|YP_004083729.1| beta-lactamase [Micromonospora sp. L5]
gi|315411461|gb|ADU09578.1| beta-lactamase [Micromonospora sp. L5]
Length = 436
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + S+TK MTA +V + L P
Sbjct: 50 DGDLQYRVGSITKTMTAVLVMQQRDAGRVALDDP 83
>gi|253582678|ref|ZP_04859899.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium varium ATCC
27725]
gi|251835548|gb|EES64088.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium varium ATCC
27725]
Length = 475
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++D TG V+A++ + PAS+ K++T+
Sbjct: 54 VVDLKTGKVVADHRGEKALVPASVMKVVTSGAALE 88
>gi|154249975|ref|YP_001410800.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Fervidobacterium nodosum Rt17-B1]
gi|154153911|gb|ABS61143.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Fervidobacterium nodosum Rt17-B1]
Length = 395
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
S A + D G+V+ + + + PAS+TK+ + V +
Sbjct: 31 SSKAPLSSYVGVYFQDIENGNVLVQYNEHNLYVPASITKIFSTLVAWE 78
>gi|52785884|ref|YP_091713.1| hypothetical protein BLi02133 [Bacillus licheniformis ATCC 14580]
gi|52348386|gb|AAU41020.1| DacC [Bacillus licheniformis ATCC 14580]
Length = 742
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+G +I + D PAS KL+TA +
Sbjct: 313 AESGKMIYGHMGDTRMRPASNLKLLTAAAAY 343
>gi|120406856|ref|YP_956685.1| beta-lactamase [Mycobacterium vanbaalenii PYR-1]
gi|119959674|gb|ABM16679.1| beta-lactamase [Mycobacterium vanbaalenii PYR-1]
Length = 310
Score = 38.4 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 3/116 (2%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTA--YVVFSFLKEKKAMLTTPITISKNASEY 89
+LD NTG +I N + P+ AS+ KL A ++ + + ++
Sbjct: 91 VVLDRNTGQII-SNGANKPFPIASVVKLFIADDLLLQESEGKTQLSAADRKSLDVMLRSS 149
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
S + + +++ T + L
Sbjct: 150 DDSAAQIFWDRSGQNAVIARVVARYGLTGTTAPHNGHWDVTTSTASDLVRYYDMLL 205
>gi|302533957|ref|ZP_07286299.1| stage V sporulation protein D [Streptomyces sp. C]
gi|302442852|gb|EFL14668.1| stage V sporulation protein D [Streptomyces sp. C]
Length = 606
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 47/167 (28%), Gaps = 31/167 (18%)
Query: 17 FPFLSIAETNKLPYY-----TLLDTNTGHVIAENYP---------------------DHP 50
+IAE + + DT TG V+A
Sbjct: 232 AAQSAIAEQVEKSGADRGYVIVQDTRTGEVLAMANAPGFDPNDLTRARSTAMGNAALQDV 291
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ P S K+M+ V K A T + + T L
Sbjct: 292 YEPGSTAKVMSMAAVLEEKK---ARPDTRVEVPNRLH--RGDRLFKDDVDHPTWYLTLNG 346
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
++ KS+N + L ++ + + + + G+ +N G
Sbjct: 347 VLAKSSNIGTILATGQLGASQSEANKVLYSYLDKFGIGRPTGLNYPG 393
>gi|320160619|ref|YP_004173843.1| hypothetical protein ANT_12090 [Anaerolinea thermophila UNI-1]
gi|319994472|dbj|BAJ63243.1| hypothetical protein ANT_12090 [Anaerolinea thermophila UNI-1]
Length = 325
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ E D +PAS+ K+ +V L++
Sbjct: 99 GRVLFEWRSDEIIHPASIVKVPLGMLVLETLEKGTEEPLD 138
>gi|281422788|ref|ZP_06253787.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella copri DSM 18205]
gi|281403156|gb|EFB33836.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella copri DSM 18205]
Length = 426
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D + I + PAS KL+TA
Sbjct: 84 MVWDLSADSCIYQRNERQLMRPASTMKLLTAITALDK 120
>gi|320531612|ref|ZP_08032555.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinomyces sp. oral taxon 171 str. F0337]
gi|320136189|gb|EFW28194.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinomyces sp. oral taxon 171 str. F0337]
Length = 465
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+++D TG + + PAS K++TA+ S +
Sbjct: 93 TASVIDVATGEELLDRSAATGVTPASTNKVLTAWAALSSMGPGH 136
>gi|237749502|ref|ZP_04579982.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacter formigenes
OXCC13]
gi|229380864|gb|EEO30955.1| D-alanyl-D-alanine carboxypeptidase [Oxalobacter formigenes
OXCC13]
Length = 473
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 17/84 (20%)
Query: 1 MRQFLVI----IAMAMLSNIFPFLSIAETNKLPY------------YTLLD-TNTGHVIA 43
MR+ + P + + + Y +++ ++
Sbjct: 1 MRKLSTFCRKWFSGLFFILALPVFAQQLPSSVKYELELAGIPENSVGIVVEQVDSNVSRL 60
Query: 44 ENYPDHPWNPASLTKLMTAYVVFS 67
+ D + PAS K++T Y
Sbjct: 61 THNADIAFAPASTMKVLTTYAALE 84
>gi|254442477|ref|ZP_05055953.1| Penicillin binding protein transpeptidase domain, putative
[Verrucomicrobiae bacterium DG1235]
gi|198256785|gb|EDY81093.1| Penicillin binding protein transpeptidase domain, putative
[Verrucomicrobiae bacterium DG1235]
Length = 269
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 15/80 (18%)
Query: 3 QFLVIIAMAMLSNIFPFLSIAETNKLPYY-------------TLLDTNTGHVIAENYP-- 47
+ ++ +A ++ + L+ + P L D T P
Sbjct: 6 RLILSLAASLYGLLTASLAQPNPVEFPPATEAILASGFDGTLCLYDLKTQTYRTNRNPSI 65
Query: 48 DHPWNPASLTKLMTAYVVFS 67
D P PAS K+ ++ V
Sbjct: 66 DTPRIPASTFKIFSSLVALE 85
>gi|307327057|ref|ZP_07606247.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces violaceusniger Tu 4113]
gi|306887355|gb|EFN18351.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Streptomyces violaceusniger Tu 4113]
Length = 532
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 19/59 (32%)
Query: 10 MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + P L + ++D TG + + PAS KL T S
Sbjct: 143 AGLADTLEPLLEDSALADERSVAVMDVTTGQQVFGSKAGTATVPASTIKLATGAAALSA 201
>gi|148359153|ref|YP_001250360.1| beta-lactamase AmpS [Legionella pneumophila str. Corby]
gi|148280926|gb|ABQ55014.1| beta-lactamase AmpS [Legionella pneumophila str. Corby]
Length = 266
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 21/203 (10%), Positives = 49/203 (24%), Gaps = 11/203 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVI--AENYPDHPWNPASLTK 58
M++ ++ + +L + + V+ N D ++PAS K
Sbjct: 1 MKKIIIFLCTGLLFCV-STWAQGTCFLAK-------ENQTVLKREGNDCDQRYSPASTFK 52
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ + + F K L K Y + T D+ + +
Sbjct: 53 IALSLMGFDSGILKD-ELHPEWPYKKEYELYLNVWKYPQNPHTWIRDSCVWYSQALTRQL 111
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+ + +N GL+ ++ + + + +
Sbjct: 112 GMKRFKGYVDAFHYGNQDVSGDKGQNNGLTHAWLSSSLSISPTEQIQFLQKIIYKKLPVS 171
Query: 179 TDFPQYMHYFQIKGLEIKGKKYP 201
G K
Sbjct: 172 QKAYTMTKNIMYIQELPGGWKLY 194
>gi|294674657|ref|YP_003575273.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella ruminicola 23]
gi|294473329|gb|ADE82718.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella ruminicola 23]
Length = 409
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 8/37 (21%), Positives = 11/37 (29%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D + PAS KL+TA
Sbjct: 69 MVYDITADSTLYTYGAKQILRPASTMKLLTAITALDQ 105
>gi|254369285|ref|ZP_04985297.1| beta-lactamase class A [Francisella tularensis subsp. holarctica
FSC022]
gi|157122235|gb|EDO66375.1| beta-lactamase class A [Francisella tularensis subsp. holarctica
FSC022]
Length = 294
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 52/212 (24%), Gaps = 3/212 (1%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
+ S K + + +L I ISKN + TM
Sbjct: 55 FAVNASFYFPICSTYKFLVVGAILKQSMTDNKLLNQKIKISKNQIVEYSPITRRHINQTM 114
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T+ + + + I + + +N + +
Sbjct: 115 TVKQLCQASMQGDNTATNILIEKLGGLKNLNKFILSLADHATKVANLEPKVNHVSLTTNE 174
Query: 163 HYTTARDMAILSWRIKT--DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+ TT + MA ++ D H K I N G KTG
Sbjct: 175 NKTTPKIMARDINKLAFSDDILDKKHRLMFKQWLIASNTSNNHIAVEVPDEWEVGDKTGT 234
Query: 221 TCASGFNIVASAIQGDQS-LIAVILGALDRNT 251
N VA D +I I +
Sbjct: 235 CQYGTTNDVAIIWPDDNRAVIMAIFYTQSQKN 266
>gi|89256306|ref|YP_513668.1| Beta-lactamase class A [Francisella tularensis subsp. holarctica
LVS]
gi|115314753|ref|YP_763476.1| beta-lactamase [Francisella tularensis subsp. holarctica OSU18]
gi|156502375|ref|YP_001428440.1| beta-lactamase family protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167010179|ref|ZP_02275110.1| beta-lactamase [Francisella tularensis subsp. holarctica FSC200]
gi|254367639|ref|ZP_04983660.1| beta-lactamase class A [Francisella tularensis subsp. holarctica
257]
gi|290953140|ref|ZP_06557761.1| beta-lactamase family protein [Francisella tularensis subsp.
holarctica URFT1]
gi|295313668|ref|ZP_06804252.1| beta-lactamase family protein [Francisella tularensis subsp.
holarctica URFT1]
gi|89144137|emb|CAJ79396.1| Beta-lactamase class A [Francisella tularensis subsp. holarctica
LVS]
gi|115129652|gb|ABI82839.1| beta-lactamase [Francisella tularensis subsp. holarctica OSU18]
gi|134253450|gb|EBA52544.1| beta-lactamase class A [Francisella tularensis subsp. holarctica
257]
gi|156252978|gb|ABU61484.1| beta-lactamase family protein [Francisella tularensis subsp.
holarctica FTNF002-00]
Length = 294
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 33/212 (15%), Positives = 53/212 (25%), Gaps = 3/212 (1%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
+ S K + + +L I ISKN + TM
Sbjct: 55 FAVNASFYFPICSTYKFLVVGAILKQSMTDNKLLNQKIKISKNQIVEYSPITRRHINQTM 114
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T+ + + + I + + +N + +
Sbjct: 115 TVKQLCQASMQGDNTATNILIEKLGGLKNLNKFILSLADHATKVANLEPKVNHVSLTTNE 174
Query: 163 HYTTARDMAILSWRIKT--DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+ TT + MA ++ D H K I N A G KTG
Sbjct: 175 NKTTPKIMARDINKLAFSDDILDKKHRLMFKQWLIASNTSNNHIAAEVPDEWEVGDKTGT 234
Query: 221 TCASGFNIVASAIQGDQS-LIAVILGALDRNT 251
N VA D +I I +
Sbjct: 235 CQYGTTNDVAIIWPDDNRAVIMAIFYTQSQKN 266
>gi|307245857|ref|ZP_07527942.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|307254830|ref|ZP_07536656.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307259272|ref|ZP_07541001.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
gi|306853217|gb|EFM85437.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|306862201|gb|EFM94169.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306866639|gb|EFM98498.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 11 str. 56153]
Length = 480
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 5 LVIIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
L++ ++ + S F ++ + + + T +I + D PAS K
Sbjct: 13 LLLTSILIPSISFAEINTSELLTNLPAGASASFIAKNLETNQIITQYQSDVFMLPASTQK 72
Query: 59 LMTAYVV 65
+ TA
Sbjct: 73 VFTALAA 79
>gi|295110945|emb|CBL27695.1| Beta-lactamase class A [Synergistetes bacterium SGP1]
Length = 280
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 35/236 (14%), Positives = 70/236 (29%), Gaps = 28/236 (11%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI-SKNASEYPPSNST 95
+G V E P+ AS+ KL + + E + I S N
Sbjct: 33 ESGEV-VEINPNRALCSASIIKLPILALALKDVGEGRLDWKKTYQIASANRVGGTGVLRE 91
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT----- 150
+ +L+ L+I S N A + + + + + ++LG + T
Sbjct: 92 LDEIREASLEKLAFLMIALSDNIAANQVIDLIS------MDRITPFCRSLGYTNTRCERK 145
Query: 151 ---HFMNAHGVVQHGHYTTA-RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWA 206
G + A R ++ ++ + I ++ K P A
Sbjct: 146 QLDMQAIREGRNNYTSAGDAGRMLSAVARGELVNPVASRLIHSIMSRQMCRNKLPAKIPA 205
Query: 207 VGTFLGADGM-----------KTGFTCASGFNIVASAIQGDQSLIAVILGALDRNT 251
+ + DGM KTG + + + + +L ++
Sbjct: 206 IAYWAVQDGMTLPAGSVLAANKTGELLDVQHDAGIFTLPDGRRYVIAMLTGEVKDA 261
>gi|294676357|ref|YP_003576972.1| peptidoglycan glycosyltransferase [Rhodobacter capsulatus SB 1003]
gi|294475177|gb|ADE84565.1| peptidoglycan glycosyltransferase [Rhodobacter capsulatus SB 1003]
Length = 645
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 5/133 (3%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
I+A+A + P L + + Y L++ + +A+ + P S KL+T
Sbjct: 285 IMAIASAPSFDPNLFVRGISGADYTALMEND-HRPLADKTVQGVYPPGSTFKLVTLLAAL 343
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ K S NA+ L
Sbjct: 344 EA---GVISPEETVYC-PGYMTVGGRRFGCWKHSGHGRVNAVYSLEQSCDTYYYEVSQRV 399
Query: 127 LCKTEKKFVQHMN 139
+ + +
Sbjct: 400 GIEAIAAMARRLG 412
>gi|111018216|ref|YP_701188.1| beta lactamase [Rhodococcus jostii RHA1]
gi|110817746|gb|ABG93030.1| possible beta lactamase [Rhodococcus jostii RHA1]
Length = 272
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTP 79
+L + G VI E P AS+TKL+ AY V +E L P
Sbjct: 11 PVDNAAAVVLSYDEG-VIGEYGDQQRVFPLASVTKLLCAYAVLVATEEGAVELDQP 65
>gi|19704905|ref|NP_602400.1| Beta-lactamase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|19712798|gb|AAL93699.1| Beta-lactamase [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 264
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 36/208 (17%), Positives = 66/208 (31%), Gaps = 13/208 (6%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-YPPSNSTFKKGST 101
+ AS+ KL+ + + E K L+ ITI+ G
Sbjct: 35 FSINGNEKVLSASMIKLLILAELMKKVSENKFSLSDTITITNFMKTGGDGVLKELNAGHH 94
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ- 160
TL L+I+ S N + + L ++++N K LGL T +
Sbjct: 95 FTLKELATLMIIVSDNQATNILIDFL------GMENINFLGKELGLRETFLERRMMDAEA 148
Query: 161 ----HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM 216
+ +YT+A D+++L + L+I ++
Sbjct: 149 SKNGYDNYTSADDISLLLK-LIYQEKLINKETSQLMLDILLRQQQGERLQRYLPPDIKIA 207
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ N G++ I V+L
Sbjct: 208 HKCGDLDNLENDGGIIWLGNKIYILVVL 235
>gi|332523375|ref|ZP_08399627.1| penicillin-binding protein 2X [Streptococcus porcinus str.
Jelinkova 176]
gi|332314639|gb|EGJ27624.1| penicillin-binding protein 2X [Streptococcus porcinus str.
Jelinkova 176]
Length = 750
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 12/135 (8%), Positives = 31/135 (22%), Gaps = 26/135 (19%)
Query: 30 YYTLLDTNTGHVIA-----ENYPDHP------------------WNPASLTKLMTAYVVF 66
TL++ TG ++A D + P S K+MT
Sbjct: 291 SATLVNAKTGEILATSQRPSYNADTLEGLNNKKYNWKSALYQNNFEPGSTMKVMTLAAAI 350
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ + + + ++ + + +
Sbjct: 351 DE---GVFKPNDVYSNANGLKIADATIQDWSINEGISTGQYMTYAQGFAYSSNVGMTKLE 407
Query: 127 LCKTEKKFVQHMNNT 141
K ++ ++
Sbjct: 408 QKMGNKTWLDYLTKF 422
>gi|154183792|gb|ABS70736.1| GES-7 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 271
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 36 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVKWSP 94
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 95 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 149
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 150 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 209
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 210 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 248
>gi|154183790|gb|ABS70735.1| GES-7 extended-spectrum beta-lactamase [Klebsiella pneumoniae]
Length = 265
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 31 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVKWSP 89
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 90 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 144
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 145 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 204
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 205 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 243
>gi|30023947|gb|AAF28763.2|AF208529_1 class A beta-lactamase [Enterobacter cloacae]
gi|30350252|gb|AAP22974.1| IBC-1 beta lactamase [Escherichia coli]
gi|316994928|gb|ADU79013.1| extended-spectrum beta-lactamase GES-7/IBC-1 [Aeromonas veronii]
Length = 287
Score = 38.4 bits (87), Expect = 1.5, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVKWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|309388987|gb|ADO76867.1| Peptidoglycan glycosyltransferase [Halanaerobium praevalens DSM
2228]
Length = 689
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 22/84 (26%)
Query: 30 YYTLLDTNTGHVIA----------------ENY-----PDHPWNPASLTKLMTAYVVFSF 68
++D++TG V+A E + + PAS K++TA
Sbjct: 244 SVIVMDSSTGDVLALANTPSYNPNKFGKYSEKNWRNRAVNDVFEPASTFKIITAASALEE 303
Query: 69 -LKEKKAMLTTPITISKNASEYPP 91
+ + +LT P I +
Sbjct: 304 GVITENDILTDPGHIYVENQKINC 327
>gi|307610318|emb|CBW99885.1| hypothetical protein LPW_16431 [Legionella pneumophila 130b]
Length = 266
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 21/203 (10%), Positives = 49/203 (24%), Gaps = 11/203 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVI--AENYPDHPWNPASLTK 58
M++ ++ + +L + + V+ N D ++PAS K
Sbjct: 1 MKKIIIFLCTGLLFCV-STWAQGTCFLAK-------ENQTVLKREGNDCDQRYSPASTFK 52
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ + + F K L K Y + T D+ + +
Sbjct: 53 IALSLMGFDSGILKD-ELHPEWPYKKEYELYLNVWKYPQNPHTWIRDSCVWYSQALTRQL 111
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+ + +N GL+ ++ + + + +
Sbjct: 112 GMKRFKGYVDAFHYGNQDVSGDRGQNNGLTNAWLSSSLSISPAEQIQFLQKIIYKKLPVS 171
Query: 179 TDFPQYMHYFQIKGLEIKGKKYP 201
G K
Sbjct: 172 QKAYTMTKNIMYIQELPGGWKLY 194
>gi|284928707|ref|YP_003421229.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[cyanobacterium UCYN-A]
gi|284809166|gb|ADB94871.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4)
[cyanobacterium UCYN-A]
Length = 294
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 32 TLLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFS----FLKEKKAMLTTPITISK 84
L++ G V+ + PD + PAS K+ T K L + + I+
Sbjct: 81 ILVEKLEDGTVLYSHNPDKYFIPASNNKIFTTAAALQLFNPKSKIGSKTLESWVNITN 138
>gi|325990179|gb|ADZ48685.1| extended-spectrum beta-lactamase GES-17 [Escherichia coli]
Length = 287
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 28/219 (12%), Positives = 53/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRMAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVKWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGARNDIGFFKAQERDYAVAV 255
>gi|317508073|ref|ZP_07965758.1| beta-lactamase [Segniliparus rugosus ATCC BAA-974]
gi|316253641|gb|EFV13026.1| beta-lactamase [Segniliparus rugosus ATCC BAA-974]
Length = 388
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 34/233 (14%), Positives = 65/233 (27%), Gaps = 8/233 (3%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT--TPITISKNAS 87
+LDT +G + E+ D + S K + A V +++ +L P+ A
Sbjct: 142 GVFVLDTGSGKTL-EHRADQRFMMCSTFKALLAGAVLRKAQDEPGLLDRSIPVPAEAAAG 200
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNL 145
+ G + TL + I S N A + + F + +++T L
Sbjct: 201 AGYAPFGNSRLGKSATLAELCEASIQISDNIAANLLIDFLGGPPAVTSFFRSLDDTVTRL 260
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
+ T L + Q+ +
Sbjct: 261 DRHEEAMSDGEAKDLLDTTTPRAIAKTLHKLALGEALAKPQRQQLVDWMLGSVTGTECIR 320
Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQS---LIAVILGALDRNTRNKV 255
A KTG + +A +A++ ++ RN
Sbjct: 321 AGLPSEWKVADKTGTGARGERHDIAIVWPTGGKAPLAVAILTRVQNKAERNDQ 373
>gi|307261433|ref|ZP_07543106.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
gi|306868890|gb|EFN00694.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinobacillus pleuropneumoniae serovar 12 str. 1096]
Length = 480
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 5 LVIIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
L++ ++ + S F ++ + + + T +I + D PAS K
Sbjct: 13 LLLTSILIPSISFAEINTSELLTNLPAGASASFIAKNLETNQIITQYQSDVFMLPASTQK 72
Query: 59 LMTAYVV 65
+ TA
Sbjct: 73 VFTALAA 79
>gi|221309773|ref|ZP_03591620.1| beta-lactamase precursor [Bacillus subtilis subsp. subtilis str.
168]
gi|221314095|ref|ZP_03595900.1| beta-lactamase precursor [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221319017|ref|ZP_03600311.1| beta-lactamase precursor [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323291|ref|ZP_03604585.1| beta-lactamase precursor [Bacillus subtilis subsp. subtilis str.
SMY]
Length = 304
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 5/211 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D + IA P+ + AS K++ A V + L I SK+
Sbjct: 67 IDIGSNKTIAYR-PNERFAYASTYKVLAAAAVLKKNSIE--KLNEVIHYSKDDLVTYSPI 123
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M+L + I S N + + K +K ++ + + T
Sbjct: 124 TEKHLDTGMSLKEISEAAIRYSDNTAGNILLQQLGGPKGFEKSLKQIGDHVTKAKRFETD 183
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+A T L + + A
Sbjct: 184 LNSAIPGDIRDTSTAKALATDLKAFTLDNTLTTDKRMILTDWMRGNATGDELIRAGAPIG 243
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
G K+G N +A +++ I V
Sbjct: 244 WEVGDKSGAGSYGTRNDIAIVWPPNRAPIVV 274
>gi|111017199|ref|YP_700171.1| beta-lactamase, penicillin binding protein [Rhodococcus jostii
RHA1]
gi|110816729|gb|ABG92013.1| beta-lactamase, penicillin binding protein [Rhodococcus jostii
RHA1]
Length = 317
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 53/214 (24%), Gaps = 4/214 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
++ TG V + D + S K + V ++ L + I
Sbjct: 74 VNPATGEV-YSHRGDERFAMCSTFKAYASAAVLRKTEDGSTSLDKTVVIEPGDLVENSPV 132
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATH 151
+ G+ MTL + + +S N + + + + + + L T
Sbjct: 133 TAAAVGAPMTLGQIAEAALTQSDNTAGNYLLREIGGPQAITALARDVGDGGTRLDRWETE 192
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T + D Q+ K A
Sbjct: 193 LNTAFRDDPRDTTTPNGLAQGFRALLLGDALDTASRDQLLEWMRASKTSDKRMRAGLPTG 252
Query: 212 GADGMKTGFTCASGFNIVASAIQ-GDQSLIAVIL 244
KTG N A L+ IL
Sbjct: 253 WTAADKTGGGGFGTANDAGVAWSPDGAPLVLAIL 286
>gi|94989519|ref|YP_597619.1| Beta-lactamase [Streptococcus pyogenes MGAS10270]
gi|94543027|gb|ABF33075.1| Beta-lactamase [Streptococcus pyogenes MGAS10270]
Length = 428
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 25/204 (12%), Positives = 55/204 (26%), Gaps = 13/204 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--------FK 97
D AS++KL Y+V L++KK +T +K+ + +
Sbjct: 222 NADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTKDVNHFYGDYDPLGSGKISKIA 281
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+++ LK + +S N + LC K + +
Sbjct: 282 DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAFRSEIKALSGIDWDM-----EQR 336
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++ + + + Q + + + + +
Sbjct: 337 LLTSRSAANMMEAIYHQKGQIISYLSNTEFDQQRITKNITVPVAHKIGDAYDYKHDVAIV 396
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
G T + D + IA
Sbjct: 397 YGNTPFILSIFTNKSTYEDITAIA 420
>gi|303241281|ref|ZP_07327787.1| beta-lactamase [Acetivibrio cellulolyticus CD2]
gi|302591198|gb|EFL60940.1| beta-lactamase [Acetivibrio cellulolyticus CD2]
Length = 513
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 43 AENY----PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
EN P+ + AS+TK TA + + K L
Sbjct: 113 YENNIPNMPNTRFAIASMTKQFTAMAILQLYENGKLNLDDK 153
>gi|255950998|ref|XP_002566266.1| Pc22g23750 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593283|emb|CAP99663.1| Pc22g23750 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 3061
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
D + ASLTKLMT + ++ + L
Sbjct: 2724 DAVYGMASLTKLMTTIAIMICVERGQISLDD 2754
>gi|6685151|gb|AAF23816.1|AF217648_1 beta-lactamase [Vibrio harveyi]
Length = 290
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 29/213 (13%), Positives = 65/213 (30%), Gaps = 4/213 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+ DT T + D + S K + + S + +K + +
Sbjct: 41 VWDTQTDE-HWDYRGDERFPMMSTFKTLACATMLSDMDNEKLDKNATAKVEERNMVVWSP 99
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKK---FVQHMNNTSKNLGLSA 149
G T ++A + ++ S N A + S+ F++ + + + L
Sbjct: 100 VMDRMAGQTTRFEHACEAAMLMSDNSAAHIVLRSIWGVHAGGTSFLRSIGDKATRLDRFE 159
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
A+ + T + L ++ D Y Q+K K + +V
Sbjct: 160 PRLNEANPGDKRDTTTPNAMVNTLHTLLEGDALSYESRIQLKIWMQDNKVSDSLMRSVLP 219
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ ++G I A + + + +
Sbjct: 220 KGWSIADRSGAGGFGSRGITAMIWKENHKPVYI 252
>gi|320547723|ref|ZP_08042008.1| beta-lactamase [Streptococcus equinus ATCC 9812]
gi|320447798|gb|EFW88556.1| beta-lactamase [Streptococcus equinus ATCC 9812]
Length = 428
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
D AS+ KL T Y V +++ + + + +
Sbjct: 222 NSDTTMYAASIAKLATLYYVEEKIQDGSVKMDDKLRYTAD 261
>gi|19745209|ref|NP_606345.1| hypothetical protein spyM18_0011 [Streptococcus pyogenes MGAS8232]
gi|71902677|ref|YP_279480.1| hypothetical protein M28_Spy0010 [Streptococcus pyogenes MGAS6180]
gi|94987641|ref|YP_595742.1| beta-lactamase [Streptococcus pyogenes MGAS9429]
gi|94991507|ref|YP_599606.1| Beta-lactamase [Streptococcus pyogenes MGAS2096]
gi|139472898|ref|YP_001127613.1| hypothetical protein SpyM50010 [Streptococcus pyogenes str.
Manfredo]
gi|306826401|ref|ZP_07459715.1| beta-lactamase [Streptococcus pyogenes ATCC 10782]
gi|19747298|gb|AAL96844.1| hypothetical protein spyM18_0011 [Streptococcus pyogenes MGAS8232]
gi|71801772|gb|AAX71125.1| conserved hypothetical protein [Streptococcus pyogenes MGAS6180]
gi|94541149|gb|ABF31198.1| beta-lactamase [Streptococcus pyogenes MGAS9429]
gi|94545015|gb|ABF35062.1| Beta-lactamase [Streptococcus pyogenes MGAS2096]
gi|134271144|emb|CAM29354.1| putative exported protein [Streptococcus pyogenes str. Manfredo]
gi|304431396|gb|EFM34391.1| beta-lactamase [Streptococcus pyogenes ATCC 10782]
Length = 428
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 25/204 (12%), Positives = 55/204 (26%), Gaps = 13/204 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--------FK 97
D AS++KL Y+V L++KK +T +K+ + +
Sbjct: 222 NADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTKDVNHFYGDYDPLGSGKISKIA 281
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+++ LK + +S N + LC K + +
Sbjct: 282 DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAFRSEIKALSGIDWDM-----EQR 336
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++ + + + Q + + + + +
Sbjct: 337 LLTSRSAANMMEAIYHQKGQIISYLSNTEFDQQRITKNITVPVAHKIGDAYDYKHDVAIV 396
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
G T + D + IA
Sbjct: 397 YGNTPFILSIFTNKSTYEDITAIA 420
>gi|307610862|emb|CBX00477.1| hypothetical protein LPW_21951 [Legionella pneumophila 130b]
Length = 718
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + ASL+K++ Y+V + KE K L P
Sbjct: 51 DANTRFPAASLSKIVFTYLVLQWTKENKIDLDEP 84
>gi|229100618|ref|ZP_04231468.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
gi|228682798|gb|EEL36826.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
Length = 367
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 8/125 (6%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS-- 94
++ D AS+ KL+ A I++S+ Y +
Sbjct: 55 KNDEILCSINEDKRLPLASMVKLIIAIEFAKQSANGIINENEYISLSELKKYYIKNTDGG 114
Query: 95 -TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF-----VQHMNNTSKNLGLS 148
K M +N +K V N + S + ++++N K LGL
Sbjct: 115 AHPKWEQDMIQNNQIKNDCVTLQNIARGMLQYSSNANTEYLINILGIENINQNIKELGLK 174
Query: 149 ATHFM 153
+
Sbjct: 175 HHEEV 179
>gi|50954004|ref|YP_061292.1| beta-lactamase related protein [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50950486|gb|AAT88187.1| beta-lactamase related protein [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 278
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAM 75
+ D +TG V+ AS+ K++ V + L+
Sbjct: 28 VTDLSTGEVLFSVDDHVVMPTASIGKVLLLVEVAARLQSGGLS 70
>gi|290766002|gb|ADD59981.1| CTX-M-15 beta-lactamase [Escherichia coli]
Length = 107
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 17/97 (17%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
D + S +K+M A V + + +L + I
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEI 100
>gi|16078940|ref|NP_389761.1| beta-lactamase precursor [Bacillus subtilis subsp. subtilis str.
168]
gi|7676151|sp|P39824|BLAC_BACSU RecName: Full=Beta-lactamase; AltName: Full=Penicillinase; Flags:
Precursor
gi|2619002|gb|AAB84426.1| penicillinase [Bacillus subtilis]
gi|2634273|emb|CAB13772.1| beta-lactamase precursor [Bacillus subtilis subsp. subtilis str.
168]
Length = 306
Score = 38.4 bits (87), Expect = 1.6, Method: Composition-based stats.
Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 5/211 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D + IA P+ + AS K++ A V + L I SK+
Sbjct: 69 IDIGSNKTIAYR-PNERFAYASTYKVLAAAAVLKKNSIE--KLNEVIHYSKDDLVTYSPI 125
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M+L + I S N + + K +K ++ + + T
Sbjct: 126 TEKHLDTGMSLKEISEAAIRYSDNTAGNILLQQLGGPKGFEKSLKQIGDHVTKAKRFETD 185
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+A T L + + A
Sbjct: 186 LNSAIPGDIRDTSTAKALATDLKAFTLDNTLTTDKRMILTDWMRGNATGDELIRAGAPIG 245
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
G K+G N +A +++ I V
Sbjct: 246 WEVGDKSGAGSYGTRNDIAIVWPPNRAPIVV 276
>gi|284042486|ref|YP_003392826.1| beta-lactamase [Conexibacter woesei DSM 14684]
gi|283946707|gb|ADB49451.1| beta-lactamase [Conexibacter woesei DSM 14684]
Length = 461
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
LL+ +TG D + S+TKL TA +V + E + L
Sbjct: 39 QVATAAAGLLNLDTG---VAATADSLFQIGSITKLYTATLVMQLVDEGRIDLD 88
>gi|239981408|ref|ZP_04703932.1| beta-lactamase [Streptomyces albus J1074]
gi|291453264|ref|ZP_06592654.1| beta-lactamase [Streptomyces albus J1074]
gi|291356213|gb|EFE83115.1| beta-lactamase [Streptomyces albus J1074]
Length = 312
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 28/229 (12%), Positives = 61/229 (26%), Gaps = 8/229 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
DT +G +A D + S+ K +++ V L L+ I +++ E
Sbjct: 69 YDTGSGRTVAYR-ADELFPMCSVFKTLSSAAVLRDLDRNGEFLSRRILYTQDDVEQADGA 127
Query: 94 STFKKGSTMTLDNALKLLIV---KSANDIAVAIAESLCKTEKK---FVQHMNNTSKNLGL 147
K + ++ L ++++ A + FV+ + + L
Sbjct: 128 PETGKPQNLANGMTVEELCEVSITASDNCAANLMLRELGGPAAVTRFVRSLGDRVTRLDR 187
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+A + + D + + + A
Sbjct: 188 WEPELNSAEPGRVTDTTSPRAITRTYGRLVLGDALNPRDRRLLTSWLLANTTSGDRFRAG 247
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G KTG N + ++ +L A +
Sbjct: 248 LPDDWTLGDKTGAGRYGTNNDAGVTWPPGRAPIVLTVLTAKTEQDAARD 296
>gi|226329802|ref|ZP_03805320.1| hypothetical protein PROPEN_03714 [Proteus penneri ATCC 35198]
gi|225200597|gb|EEG82951.1| hypothetical protein PROPEN_03714 [Proteus penneri ATCC 35198]
Length = 259
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 3/200 (1%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ + AS +K+M V +++ +L I I K+ + + M+L
Sbjct: 28 GEERFAMASTSKVMAVAAVLKESEKQAGLLDKNIAIKKSDLVAYSPITEKHLVTGMSLAQ 87
Query: 107 ALKLLIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ S N I + + +F + +N+ + L A
Sbjct: 88 LSAATLQYSDNTAMNKILDYLGGPSSVTQFARSINDVTYRLDRKEPELNTAIHGDPRDTT 147
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
+ L D Q+ ++ A G KTG
Sbjct: 148 SPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTTGDHSIKAGLPKHWIVGDKTGSGDYG 207
Query: 225 GFNIVASAIQGDQ-SLIAVI 243
N +A + LI V+
Sbjct: 208 TTNDIAVIWPENHAPLILVV 227
>gi|239621576|ref|ZP_04664607.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239515451|gb|EEQ55318.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 496
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
S + L A+ +++ G V AE+ + P PAS K +TA
Sbjct: 92 ASALVNELLSAQGVGNDTSVIIEDAQGAVAAEHESNTPREPASTLKTLTALAA 144
>gi|158425902|ref|YP_001527194.1| beta-lactamase precursor [Azorhizobium caulinodans ORS 571]
gi|158332791|dbj|BAF90276.1| beta-lactamase precursor [Azorhizobium caulinodans ORS 571]
Length = 296
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 39/231 (16%), Positives = 67/231 (29%), Gaps = 7/231 (3%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
++DT TG + + S K + A V + LT + I++
Sbjct: 53 VIDTGTGAR-FAHRGGERFPMCSTFKFLLAAAVLAEADRGHLKLTDMVPITRADLIAYAP 111
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
GS M+L + ++ S N A + +F++ + L +
Sbjct: 112 EVEKHVGSGMSLSDLCAAAVIWSDNGAANLLLRQIGGPAAVTRFLRSAGDPVTRLDRAEP 171
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
T + + D +K I + A
Sbjct: 172 ELNVVPEGSDMDTTTPDAVADDMVRLVLGDVLVPASRGALKDWLIGCRTGDKRLRAGLPK 231
Query: 211 LGADGMKTGFTCA--SGFNIVASAIQGDQS--LIAVILGALDRNTRNKVSA 257
G KTG A N VA A ++ +IA L A + R +
Sbjct: 232 GWTVGDKTGTGPARTGTSNDVAIAWPPGRAPLVIASYLTASRLDGRGSDAI 282
>gi|94993406|ref|YP_601504.1| beta-lactamase [Streptococcus pyogenes MGAS10750]
gi|94546914|gb|ABF36960.1| Beta-lactamase [Streptococcus pyogenes MGAS10750]
Length = 428
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 25/204 (12%), Positives = 55/204 (26%), Gaps = 13/204 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--------FK 97
D AS++KL Y+V L++KK +T +K+ + +
Sbjct: 222 NADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTKDVNHFYGDYDPLGSGKISKIA 281
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+++ LK + +S N + LC K + +
Sbjct: 282 DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAFRSEIKALSGIDWDM-----EQR 336
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++ + + + Q + + + + +
Sbjct: 337 LLTSRSAANMMEAIYHQKGQIISYLSNTEFDQQRITKNITVPVAHKIGDAYDYKHDVAIV 396
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
G T + D + IA
Sbjct: 397 YGNTPFILSIFTNKSTYEDITAIA 420
>gi|157830453|pdb|1BSG|A Chain A, Beta-Lactamase From Streptomyces Albus G
Length = 266
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 28/229 (12%), Positives = 61/229 (26%), Gaps = 8/229 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
DT +G +A D + S+ K +++ V L L+ I +++ E
Sbjct: 23 YDTGSGRTVAYR-ADELFPMCSVFKTLSSAAVLRDLDRNGEFLSRRILYTQDDVEQADGA 81
Query: 94 STFKKGSTMTLDNALKLLIV---KSANDIAVAIAESLCKTEKK---FVQHMNNTSKNLGL 147
K + ++ L ++++ A + FV+ + + L
Sbjct: 82 PETGKPQNLANGMTVEELCEVSITASDNCAANLMLRELGGPAAVTRFVRSLGDRVTRLDR 141
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAV 207
+A + + D + + + A
Sbjct: 142 WEPELNSAEPGRVTDTTSPRAITRTYGRLVLGDALNPRDRRLLTSWLLANTTSGDRFRAG 201
Query: 208 GTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G KTG N + ++ +L A +
Sbjct: 202 LPDDWTLGDKTGAGRYGTNNDAGVTWPPGRAPIVLTVLTAKTEQDAARD 250
>gi|332653736|ref|ZP_08419480.1| penicillin-binding protein 2 [Ruminococcaceae bacterium D16]
gi|332516822|gb|EGJ46427.1| penicillin-binding protein 2 [Ruminococcaceae bacterium D16]
Length = 746
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 20/151 (13%), Positives = 37/151 (24%), Gaps = 28/151 (18%)
Query: 25 TNKLPYYTLLDTNTGHVIAE-------------------NYPDHPW---------NPASL 56
+ +LD N+G V+A P P P S
Sbjct: 402 ETEGAACVVLDVNSGDVLASASYPTYSLTTFSQDYNDLSKDPLKPLLNRALQGLYPPGST 461
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K++TA + + S P +++ + I+ S
Sbjct: 462 FKMITAIAALESGIVEPDTQIDDKGVYTFYSSPQPQCWYYRQYRRTHGLQNVSQAIMNSC 521
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
N + + M + G+
Sbjct: 522 NYYFYEVGRLVGIDLLDQYAAMFGLGQKTGI 552
>gi|319900361|ref|YP_004160089.1| Peptidoglycan glycosyltransferase [Bacteroides helcogenes P 36-108]
gi|319415392|gb|ADV42503.1| Peptidoglycan glycosyltransferase [Bacteroides helcogenes P 36-108]
Length = 708
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 34/130 (26%), Gaps = 21/130 (16%)
Query: 31 YTLLDTNTGHV-------------IAENYPDHP---WNPASLTKLMTAYVVFSFLKEKKA 74
L++ TG V E + P S K + V + K
Sbjct: 265 AILMEVATGEVKAIVNMMKADDGNYYEMNSNAISDMLEPGSTFKTASIMVALE---DGKI 321
Query: 75 MLTTPITISKNASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
T + S N ++L V S ++ I + +
Sbjct: 322 TPDTEVDTGNGIMNMYGSKMRDHNWHRGGYGKINVTRILEVSSNVGVSYLIDKHYKDNPQ 381
Query: 133 KFVQHMNNTS 142
K+V + S
Sbjct: 382 KYVDGLKRMS 391
>gi|149919212|ref|ZP_01907695.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Plesiocystis pacifica SIR-1]
gi|149819926|gb|EDM79348.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Plesiocystis pacifica SIR-1]
Length = 548
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 27 KLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
K L D ++G +A + +PAS KL+TA
Sbjct: 117 KARVAVELRDLDSGARLASIGAERGLHPASTQKLITAIAAVE 158
>gi|15674259|ref|NP_268432.1| hypothetical protein SPy_0012 [Streptococcus pyogenes M1 GAS]
gi|71909824|ref|YP_281374.1| beta-lactamase [Streptococcus pyogenes MGAS5005]
gi|13621334|gb|AAK33154.1| hypothetical protein SPy_0012 [Streptococcus pyogenes M1 GAS]
gi|71852606|gb|AAZ50629.1| beta-lactamase [Streptococcus pyogenes MGAS5005]
Length = 428
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 25/204 (12%), Positives = 55/204 (26%), Gaps = 13/204 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--------FK 97
D AS++KL Y+V L++KK +T +K+ + +
Sbjct: 222 NADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYTKDVNHFYGDYDPLGSGKISKIA 281
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+++ LK + +S N + LC K + +
Sbjct: 282 DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAFRSEIKALSGIDWDM-----EQR 336
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++ + + + Q + + + + +
Sbjct: 337 LLTSRSAANMMEAIYHQKGQIISYLSNTEFDQQRITKNITVPVAHKIGDAYDYKHDVAIV 396
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
G T + D + IA
Sbjct: 397 YGNTPFILSIFTNKSTYEDITAIA 420
>gi|300783963|ref|YP_003764254.1| penicillin-binding protein, transpeptidase [Amycolatopsis
mediterranei U32]
gi|299793477|gb|ADJ43852.1| penicillin-binding protein, transpeptidase [Amycolatopsis
mediterranei U32]
Length = 586
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 13/85 (15%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTL--LDTNTGHVIA-ENYP--DH--------PWNP 53
+ + + I A + L + ++G ++A D + P
Sbjct: 287 AVTSTLSAKIQAAAEKALATEPYSAALVAIQPSSGDILAVAQNAAADEEGSLALSGRYPP 346
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTT 78
S K++TA S + +
Sbjct: 347 GSTFKIVTAAAALSAGEVEAGSPVD 371
>gi|148979042|ref|ZP_01815287.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Vibrionales
bacterium SWAT-3]
gi|145962015|gb|EDK27303.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Vibrionales
bacterium SWAT-3]
Length = 477
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 7/72 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-------ETNKLPYYTLLDTNTGHVIAENYPDHPWNP 53
MR ++ + + F + A L + D + P
Sbjct: 1 MRLLSTLLVCSFSISAFSINAFAYVPLDTLPDGSSTSLILKSLSDDSSELNTNSDDFYPP 60
Query: 54 ASLTKLMTAYVV 65
AS KL+TA
Sbjct: 61 ASTLKLVTALAA 72
>gi|21225869|ref|NP_631648.1| hydrolase [Streptomyces coelicolor A3(2)]
gi|11322396|emb|CAC16709.1| putative hydrolase [Streptomyces coelicolor A3(2)]
Length = 393
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ D +TG + D S+TK TA V +++ + +L
Sbjct: 60 AAGVADVDTGRPVT---ADLRHRVGSITKTFTAAAVLQQVEQGRIVLD 104
>gi|333027787|ref|ZP_08455851.1| putative stage V sporulation protein D [Streptomyces sp. Tu6071]
gi|332747639|gb|EGJ78080.1| putative stage V sporulation protein D [Streptomyces sp. Tu6071]
Length = 511
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 26/152 (17%)
Query: 30 YYTLLDTNTGHVIAENYP---------------------DHPWNPASLTKLMTAYVVFSF 68
Y + DT TG ++A + P S +K+M+ V
Sbjct: 173 YVIVQDTRTGEILALANAPGFDPNDLRHADVDALGNPALQDAYEPGSTSKIMSMAAVLEE 232
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
K ++ + T L ++ KS+N + L
Sbjct: 233 NKATPGT-----HVTVPGELRRGDRIFHDDIAHGTWHLTLNGVLAKSSNIGTILATGQLG 287
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
T+++ + +++ G+ + + G
Sbjct: 288 GTQQQANRVLHSYLHKFGIGSPTGLGFPGETS 319
>gi|318081644|ref|ZP_07988957.1| cell division protein FtsI/penicillin-binding protein [Streptomyces
sp. SA3_actF]
Length = 500
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 26/152 (17%)
Query: 30 YYTLLDTNTGHVIAENYP---------------------DHPWNPASLTKLMTAYVVFSF 68
Y + DT TG ++A + P S +K+M+ V
Sbjct: 260 YVIVQDTRTGEILALANAPGFDPNDLRHADVDALGNPALQDAYEPGSTSKIMSMAAVLEE 319
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
K ++ + T L ++ KS+N + L
Sbjct: 320 NKATPGT-----HVTVPGELRRGDRIFHDDIAHGTWHLTLNGVLAKSSNIGTILATGQLG 374
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
T+++ + +++ G+ + + G
Sbjct: 375 GTQQQANRVLHSYLHKFGIGSPTGLGFPGETS 406
>gi|302518534|ref|ZP_07270876.1| stage V sporulation protein D [Streptomyces sp. SPB78]
gi|318057548|ref|ZP_07976271.1| cell wall biosynthesis protein [Streptomyces sp. SA3_actG]
gi|302427429|gb|EFK99244.1| stage V sporulation protein D [Streptomyces sp. SPB78]
Length = 581
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 21/152 (13%), Positives = 45/152 (29%), Gaps = 26/152 (17%)
Query: 30 YYTLLDTNTGHVIAENYP---------------------DHPWNPASLTKLMTAYVVFSF 68
Y + DT TG ++A + P S +K+M+ V
Sbjct: 243 YVIVQDTRTGEILALANAPGFDPNDLRHADVDALGNPALQDAYEPGSTSKIMSMAAVLEE 302
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
K ++ + T L ++ KS+N + L
Sbjct: 303 NKATPGT-----HVTVPGELRRGDRIFHDDIAHGTWHLTLNGVLAKSSNIGTILATGQLG 357
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
T+++ + +++ G+ + + G
Sbjct: 358 GTQQQANRVLHSYLHKFGIGSPTGLGFPGETS 389
>gi|255532237|ref|YP_003092609.1| beta-lactamase [Pedobacter heparinus DSM 2366]
gi|255345221|gb|ACU04547.1| beta-lactamase [Pedobacter heparinus DSM 2366]
Length = 803
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 25/231 (10%), Positives = 61/231 (26%), Gaps = 14/231 (6%)
Query: 27 KLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN 85
+ D TG ++ AS K VF + K ++ + +
Sbjct: 547 NADFAVAYKDLGTGET-FLMNAKTNFHAASTMKTPVMAEVFKQAAKGKFAISDSVVVYNQ 605
Query: 86 ASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE-------SLCKTEKKFVQHM 138
+ + + K + + + + + +K +++
Sbjct: 606 FKSIAGGGLYKLDPANDSELELYHKIGKKMSIENLLLLMITRSSNLATNILIDKVGAKNV 665
Query: 139 NNTSKNLGLSATHF-----MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGL 193
N T +++G + TA D+ +L +I +
Sbjct: 666 NKTMRSIGAHDIQVLRGVEDGKAFEKGMNNTVTAYDLMLLFEKIAKGDMVNKKASEAMVD 725
Query: 194 EIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ + + A KTG + + + + V+L
Sbjct: 726 ILMQQTFRGIIPARLPKEVKVANKTGSITKVLNDSGIVYLPDGREYVLVLL 776
>gi|120404501|ref|YP_954330.1| peptidoglycan glycosyltransferase [Mycobacterium vanbaalenii PYR-1]
gi|119957319|gb|ABM14324.1| Peptidoglycan glycosyltransferase [Mycobacterium vanbaalenii PYR-1]
Length = 652
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 22/69 (31%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDH----------------------PWNPASLTKLM 60
A K +LD TG V+A + + P+ P S+ K++
Sbjct: 305 ASGAKNASAVVLDAKTGEVLAMSNDNTFNPAQDLSRQENRQLGNLPVSSPFEPGSVNKMI 364
Query: 61 TAYVVFSFL 69
TA V
Sbjct: 365 TAAAVIENN 373
>gi|315503389|ref|YP_004082276.1| d-alanyl-d-alanine
carboxypeptidase/d-alanyl-d-alanine-endopeptidase
[Micromonospora sp. L5]
gi|315410008|gb|ADU08125.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Micromonospora sp. L5]
Length = 588
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFL 69
+ D +T + + D P PAS+TKL T V +
Sbjct: 202 VADVSTSQALYGSGQDTPTVPASVTKLATGVAVLAAR 238
>gi|270291800|ref|ZP_06198016.1| penicillin-binding protein 1B [Streptococcus sp. M143]
gi|270279885|gb|EFA25726.1| penicillin-binding protein 1B [Streptococcus sp. M143]
Length = 820
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 37/134 (27%), Gaps = 15/134 (11%)
Query: 32 TLLDTNTGHVI-------AENY-----PDHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + A + +
Sbjct: 427 VLMDNQTGAILGFVGGRNYQENQNNHAIDTKRSPASTTKPILAYGIAIDQGLMGSASILS 486
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + K +++ M
Sbjct: 487 NYPTNFANGNPIMYVNSPGTGMMTLGEALNYSWNIPAYW--TYRTLREKGVDVKGYMEKM 544
Query: 139 NNTSKNLGLSATHF 152
G+ +
Sbjct: 545 GYEIPEYGIESLPM 558
>gi|54294337|ref|YP_126752.1| hypothetical protein lpl1405 [Legionella pneumophila str. Lens]
gi|53754169|emb|CAH15645.1| hypothetical protein lpl1405 [Legionella pneumophila str. Lens]
Length = 266
Score = 38.4 bits (87), Expect = 1.7, Method: Composition-based stats.
Identities = 21/203 (10%), Positives = 49/203 (24%), Gaps = 11/203 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVI--AENYPDHPWNPASLTK 58
M++ ++ + +L + + V+ N D ++PAS K
Sbjct: 1 MKKIIIFLCTGLLFCV-STWAQGTCFLAK-------ENQTVLKREGNDCDQRYSPASTFK 52
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ + + F K L K Y + T D+ + +
Sbjct: 53 IALSLMGFDSGILKD-ELHPEWPYKKEYELYLNVWKYPQNPHTWIRDSCVWYSQALTRQL 111
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+ + +N GL+ ++ + + + +
Sbjct: 112 GMKRFKGYVDAFHYGNQDVSGDRGQNNGLTNAWLSSSLSISPAEQIQFLQKIIYKKLPVS 171
Query: 179 TDFPQYMHYFQIKGLEIKGKKYP 201
G K
Sbjct: 172 QKAYTITKNIMYIQELPGGWKLY 194
>gi|297539598|ref|YP_003675367.1| peptidoglycan glycosyltransferase [Methylotenera sp. 301]
gi|297258945|gb|ADI30790.1| Peptidoglycan glycosyltransferase [Methylotenera sp. 301]
Length = 586
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 23/85 (27%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP---------------WNPASLTKL 59
+LD TG V+A P++P + P S K
Sbjct: 251 AVEENKAAAGAAIVLDAKTGEVLAMTNVPTYNPNNPVNIKGKTRNRAIVDTFEPGSTLKP 310
Query: 60 MTAYVVFSFLKEKKAMLTTPITISK 84
+TA + T I S
Sbjct: 311 VTAAAALES---GQYTPDTKIQTSP 332
>gi|297158564|gb|ADI08276.1| beta-lactamase [Streptomyces bingchenggensis BCW-1]
Length = 395
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 30 YYTLLDTNTGH-VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ D +G V+ D + S+TK++TA VV + E K L
Sbjct: 80 AAGVRDLTSGQPVL----ADGRFRAGSVTKVLTAAVVLQLVAEHKVALN 124
>gi|262401670|ref|ZP_06078236.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
gi|262352087|gb|EEZ01217.1| D-alanyl-D-alanine carboxypeptidase [Vibrio sp. RC586]
Length = 481
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 2 RQFLVIIAMAM-----LSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPAS 55
R+ L++ A + + L+ D + + + PAS
Sbjct: 8 RRLLLLSAFLFHPIANAQTQLDSATSKLPAGSRFALLIEDVASQQPVLNVNTHLYYPPAS 67
Query: 56 LTKLMTAYVV 65
K+ TA
Sbjct: 68 TQKIFTALAA 77
>gi|170780645|ref|YP_001708977.1| putative secreted peptidase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155213|emb|CAQ00314.1| putative secreted peptidase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 453
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
D TG V+ + P AS+ K++T+
Sbjct: 81 DAATGRVLFDRNGSTPERTASVMKVITSAAAL 112
>gi|149278201|ref|ZP_01884339.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Pedobacter sp.
BAL39]
gi|149230967|gb|EDM36348.1| Peptidase S13, D-Ala-D-Ala carboxypeptidase C [Pedobacter sp.
BAL39]
Length = 448
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
L D +I E + + PAS TKL T Y
Sbjct: 61 LYDPENDRMIFEKDAEKYFIPASNTKLFTFY 91
>gi|148272111|ref|YP_001221672.1| D-alanyl-D-alanine carboxypeptidase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830041|emb|CAN00970.1| D-alanyl-D-alanine carboxypeptidase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 452
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
D TG V+ + P AS+ K++T+
Sbjct: 80 DAATGRVLFDRNGSTPERTASVMKVITSAAAL 111
>gi|54295426|ref|YP_127841.1| hypothetical protein lpl2512 [Legionella pneumophila str. Lens]
gi|53755258|emb|CAH16752.1| hypothetical protein lpl2512 [Legionella pneumophila str. Lens]
Length = 597
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D +G + + + + PAS KL +
Sbjct: 43 VVTDLTSGETLYKRNANRLYIPASNMKLFSEAAALMA 79
>gi|85704394|ref|ZP_01035496.1| penicillin-binding protein 2 [Roseovarius sp. 217]
gi|85670802|gb|EAQ25661.1| penicillin-binding protein 2 [Roseovarius sp. 217]
Length = 647
Score = 38.4 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 17/165 (10%), Positives = 36/165 (21%), Gaps = 37/165 (22%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAE----------------------- 44
I + + + + + + + +LD TG ++A
Sbjct: 247 IQLTLNNTLQSYANARLDGESAAVVMLDCETGDILACASSPSYDPNLFVRGISVADYRAL 306
Query: 45 -NYPDHPWN---------PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
+ P P P S K++TA L + E
Sbjct: 307 LDDPYRPLPNKAVQGIYPPGSTFKMVTALAALEA---GDMSLQDTVYC-PGHLEISGRRF 362
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
K + L + + + +
Sbjct: 363 HCWKRGGHGNMDLHLSLRESCDVYYYELALRTGIENISAMAERLG 407
>gi|322375990|ref|ZP_08050500.1| penicillin-binding protein 1B [Streptococcus sp. C300]
gi|321278940|gb|EFX55983.1| penicillin-binding protein 1B [Streptococcus sp. C300]
Length = 832
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 32 TLLDTNTGHVI-------AENY-----PDHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + A + +
Sbjct: 431 VLMDNQTGAILGFVGGRNYQENQNNHAIDTKRSPASTTKPILAYGIAIDQGLMGSASILS 490
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ + ++ G + + + K +++ M
Sbjct: 491 NYPTNFSNGNPIMYVNSPGTGMMTLGEALNYSWNIPAYW--TYRTLREKGVDVKGYMEKM 548
Query: 139 NNTSKNLGLSATHF 152
G+ +
Sbjct: 549 GYEIPEYGIESLPM 562
>gi|153805785|ref|ZP_01958453.1| hypothetical protein BACCAC_00021 [Bacteroides caccae ATCC 43185]
gi|149130462|gb|EDM21668.1| hypothetical protein BACCAC_00021 [Bacteroides caccae ATCC 43185]
Length = 1544
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 24/231 (10%), Positives = 59/231 (25%), Gaps = 14/231 (6%)
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+L +V ++ + + + GV +
Sbjct: 1 MIQRLSFWIMMIVCSVMVSGQEYDGYYTNPILPSGADPWVVKHEGWYYYCCGVPGGIGVS 60
Query: 166 TARDMAILS-----WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+RD+ ++ W+ L K+ + KTG
Sbjct: 61 RSRDLHKINPPVRVWKAPEKGQWNSTCIWAPELHFWKGKWYIFYAGGYSGPPFIHQKTGV 120
Query: 221 TCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS-----MG-FYNKTDRKKIN 274
+ + + I +LG +N R + +LL + + + +
Sbjct: 121 LESVTSDAMGEYIDKGMLFTGDVLG-DWKNNRWAIDMTLLEHKGQLYAVWSGWENSEPTD 179
Query: 275 YIIKDFYQQNLSN--EVPNISEEVCTTQKEIINYNTQMKEAKDKESHFIDF 323
+ Y + N + + ++ + + + E H D
Sbjct: 180 KTQQHLYIAKMENPWTMASGRVKISSPDRYYEQGELPLNEGPQILKHGKDV 230
>gi|18041936|gb|AAL57765.1| beta-lactamase precursor HugA [Proteus penneri]
Length = 298
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 3/200 (1%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ + AS +K+M V +++ +L I I K+ + + M+L
Sbjct: 65 GEERFAMASTSKVMAVAAVLKESEKQAGLLDKNIAIKKSDLVAYSPITEKHLVTGMSLAQ 124
Query: 107 ALKLLIVKSANDIAVAIAES--LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ S N I + + +F + +N+ + L A
Sbjct: 125 LSAATLQYSDNTAMNKILDYLGGPSSVTQFARSINDVTYRLDRKEPELNTAIHGDPRDTT 184
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
+ L D Q+ ++ A G KTG
Sbjct: 185 SPIAMAKSLQALTLGDALGQSQRQQLVTWLKGNTTGDHSIKAGLPKHWIVGDKTGSGDYG 244
Query: 225 GFNIVASAIQGDQ-SLIAVI 243
N +A + LI V+
Sbjct: 245 TTNDIAVIWPENHAPLILVV 264
>gi|325334981|gb|ADZ11255.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Riemerella
anatipestifer RA-GD]
Length = 466
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTL-------------LDTNTGHVIAENYP 47
M +FL+ I S + +K L + G+ I E
Sbjct: 1 MTKFLIFILTFFYSLGIAQSIKDKLDKATKAFLNSPKMYAANMSFYVADENGNFIYEYQG 60
Query: 48 DHPWNPASLTKLMTAYVVFS 67
+ + AS K+ TA
Sbjct: 61 NKGLSTASTQKIFTAATALE 80
>gi|315612022|ref|ZP_07886939.1| penicillin-binding protein 1B [Streptococcus sanguinis ATCC 49296]
gi|315315824|gb|EFU63859.1| penicillin-binding protein 1B [Streptococcus sanguinis ATCC 49296]
Length = 835
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 32 TLLDTNTGHVI-------AENY-----PDHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + A + +
Sbjct: 434 VLMDNQTGAILGFVGGRNYQENQNNHAIDTKRSPASTTKPILAYGIAIDQGLMGSASILS 493
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ + ++ G + + + K +++ M
Sbjct: 494 NYPTNFSNGNPIMYVNSPGTGMMTLGEALNYSWNIPAYW--TYRTLREKGVDVKGYMEKM 551
Query: 139 NNTSKNLGLSATHF 152
G+ +
Sbjct: 552 GYEIPEYGIESLPM 565
>gi|332701656|ref|ZP_08421744.1| hypothetical protein Desaf_0495 [Desulfovibrio africanus str.
Walvis Bay]
gi|332551805|gb|EGJ48849.1| hypothetical protein Desaf_0495 [Desulfovibrio africanus str.
Walvis Bay]
Length = 343
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 28/233 (12%), Positives = 60/233 (25%), Gaps = 23/233 (9%)
Query: 30 YYTLLDTNTGH--VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS 87
L+D +A + ASL K+ F + L +S
Sbjct: 85 AACLVDVTDPAHPRLAMVNGERMMYAASLPKIAILLAAFEKADQGGLSLGQAERLSLARM 144
Query: 88 EYPPSNSTFKKGSTMTLDNA----LKLLIVKSANDIAVAIAESLCKTEKK-FVQHMNNTS 142
SN+ + L+ + + + K +
Sbjct: 145 IRRSSNTDASAMLAKVGRDYLIEVLESERYRLYDPAGHGGLWVGKEYGKAPAYRRDPLAG 204
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
+ G +A + ++ G + A + + + ++ + Y
Sbjct: 205 LSHGATAFQVARFYYLLHTGQLVSPERCAEMKTLLANSALDHKFVAGLRKTCPTARVYR- 263
Query: 203 TNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKV 255
K+G + + + A ++ IAV L A +R
Sbjct: 264 --------------KSG-SWSVYHSDSALVEHDGRTYIAVALTADPDGSRWLE 301
>gi|296454759|ref|YP_003661902.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bifidobacterium longum subsp. longum JDM301]
gi|296184190|gb|ADH01072.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bifidobacterium longum subsp. longum JDM301]
Length = 496
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ D G V AE+ + P PAS K +TA
Sbjct: 110 SVIIEDAQ-GTVAAEHESNTPREPASTLKTLTALAA 144
>gi|239979466|ref|ZP_04701990.1| alkaline D-peptidase [Streptomyces albus J1074]
gi|291451335|ref|ZP_06590725.1| dipeptidil carboxypeptidase [Streptomyces albus J1074]
gi|291354284|gb|EFE81186.1| dipeptidil carboxypeptidase [Streptomyces albus J1074]
Length = 398
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D +TG D + S+TK A V+ E++ L
Sbjct: 84 DLDTGR---ARGADDRFRIGSVTKTFVATVLLQLQGERRIDLDDT 125
>gi|238024897|ref|YP_002909129.1| beta-lactamase [Burkholderia glumae BGR1]
gi|237879562|gb|ACR31894.1| Beta-lactamase [Burkholderia glumae BGR1]
Length = 298
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 24/193 (12%), Positives = 45/193 (23%), Gaps = 18/193 (9%)
Query: 32 TLLDTNTGHVIAENYP--DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ D +G V+AE PAS K+ + + F +LT
Sbjct: 50 IVADAASGRVLAERGEGCATRVTPASTFKIALSLMGFDA-----GVLTD----------A 94
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
F+ G +A + + S T++ + ++ G
Sbjct: 95 HAPVLPFRAGYPDWGGDAWRQPTDPARWMRYSVFWYSQQLTQRLGQARFASYTQRFGYGN 154
Query: 150 THFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
G + + I ++ T
Sbjct: 155 ADVAPGPGEFAGMKGAWNSGSLRIAPREQIAFLRAIVNRTLPVSAHAFEMTDRITLIDAQ 214
Query: 209 TFLGADGMKTGFT 221
KTG +
Sbjct: 215 PDGWIVHGKTGTS 227
>gi|52080504|ref|YP_079295.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
[Bacillus licheniformis ATCC 14580]
gi|52003715|gb|AAU23657.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
[Bacillus licheniformis ATCC 14580]
Length = 489
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+G +I + D PAS KL+TA +
Sbjct: 60 AESGKMIYGHMGDTRMRPASNLKLLTAAAAY 90
>gi|307611469|emb|CBX01138.1| hypothetical protein LPW_28371 [Legionella pneumophila 130b]
Length = 597
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D +G + + + + PAS KL +
Sbjct: 43 VVTDLTSGETLYKRNANRLYIPASNMKLFSEAAALMA 79
>gi|256425132|ref|YP_003125785.1| beta-lactamase [Chitinophaga pinensis DSM 2588]
gi|256040040|gb|ACU63584.1| beta-lactamase [Chitinophaga pinensis DSM 2588]
Length = 286
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 24/230 (10%), Positives = 63/230 (27%), Gaps = 5/230 (2%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
+ TG + D + AS+ K+ VF +++ + P+ +
Sbjct: 44 NLKTGR-YVDINADTIFPTASIVKVPILVGVFDKIEKGELSYHQPLMYRDSIKYGGSGLM 102
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
F K ST T + L L++ +++ ++L ++ + M N +
Sbjct: 103 QFFKDSTETDLSVLVALMMAYSDNTTSLWNQALAGGGQRINELMAQYGLNNTRVNSRTPG 162
Query: 155 AHGVVQHGHY-TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+ + T + + Y +
Sbjct: 163 REAIRNVYGWGMTTPREMSELLVKIRKGEVISENASSRMYRLMTHGYYDEVGLSQIPPYT 222
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRN---KVSASLL 260
+ + + V + + +++ R + +L+
Sbjct: 223 QAAHKSGSVDASRSEVILVNAPHGEYVFYVGTKNNKDQRWTNENEAENLI 272
>gi|262203877|ref|YP_003275085.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Gordonia bronchialis DSM 43247]
gi|262087224|gb|ACY23192.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Gordonia bronchialis DSM 43247]
Length = 465
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMT 61
D TG V+ P PAS K++T
Sbjct: 102 DAITGQVLWSRNAGTPRIPASNDKVLT 128
>gi|187931852|ref|YP_001891837.1| beta-lactamase class A [Francisella tularensis subsp. mediasiatica
FSC147]
gi|187712761|gb|ACD31058.1| beta-lactamase class A [Francisella tularensis subsp. mediasiatica
FSC147]
Length = 294
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 52/212 (24%), Gaps = 3/212 (1%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
+ S K + + +L I ISKN + M
Sbjct: 55 FAVNASFYFPICSTYKFLVVGAILKQSMTDNKLLNQKIKISKNQIVEYSPITRRHINQIM 114
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T+ + + + I + + +N + +
Sbjct: 115 TVKQLCQASMQGDNTATNILIEKLGGLKNLNKFNLSLADHATKVANLEPKVNHVSLTTNE 174
Query: 163 HYTTARDMAILSWRIKT--DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+ TT + MA ++ D H K I N A G KTG
Sbjct: 175 NKTTPKIMARDINKLAFSDDILDKKHRLMFKQWLIASNTSNNRIAAEVPDEWEVGDKTGT 234
Query: 221 TCASGFNIVASAIQGDQS-LIAVILGALDRNT 251
N VA D +I I +
Sbjct: 235 CQYGTTNDVAIIWPDDNRAVIMAIFYTQSQKN 266
>gi|54298578|ref|YP_124947.1| hypothetical protein lpp2642 [Legionella pneumophila str. Paris]
gi|53752363|emb|CAH13795.1| hypothetical protein lpp2642 [Legionella pneumophila str. Paris]
Length = 597
Score = 38.0 bits (86), Expect = 1.8, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D +G + + + + PAS KL +
Sbjct: 43 VVTDLTSGETLYKRNANRLYIPASNMKLFSEAAALMA 79
>gi|312194896|ref|YP_004014957.1| penicillin-binding protein transpeptidase [Frankia sp. EuI1c]
gi|311226232|gb|ADP79087.1| penicillin-binding protein transpeptidase [Frankia sp. EuI1c]
Length = 631
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTL-LDTNTGHVIAENYP---------DHPWNPASLTK 58
++++ ++A + + +DT TG ++A + P S K
Sbjct: 320 SISLSVQQAAEAALATSRWPAAALVAIDTRTGGILASANHPPSGYGRALRGTYPPGSTFK 379
Query: 59 LMTAYVVFSFLKEKKAMLTTPITI 82
++TA + L TI
Sbjct: 380 IVTATAALMNGRNANTQLDCSQTI 403
>gi|219920913|emb|CAQ76634.1| beta-lactamase [Klebsiella oxytoca]
Length = 275
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 57/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGEVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 234 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 264
>gi|219871299|ref|YP_002475674.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase,
penicillin-binding protein 4 [Haemophilus parasuis
SH0165]
gi|219691503|gb|ACL32726.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase,
penicillin-binding protein 4 precursor [Haemophilus
parasuis SH0165]
Length = 282
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 1 MRQFLVIIA-----MAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+R L+ + + +I PF+S + +T ++ + D PAS
Sbjct: 9 LRILLLTLFYMPYSASAEVDITPFISHLPKGTSISVIAKNLSTDQIVVDYQSDLFMLPAS 68
Query: 56 LTKLMTAY 63
K+ TA
Sbjct: 69 TQKVFTAL 76
>gi|183597058|ref|ZP_02958551.1| hypothetical protein PROSTU_00296 [Providencia stuartii ATCC 25827]
gi|188023719|gb|EDU61759.1| hypothetical protein PROSTU_00296 [Providencia stuartii ATCC 25827]
Length = 334
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 34/115 (29%), Gaps = 5/115 (4%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTT--PITISKNASEYPPSNSTFKKGSTMTLD 105
D P AS TK TA + ++ K L I+ ++ + + L
Sbjct: 47 DTPLRIASNTKTFTAAAILRLVEMGKLSLDDAISQHITPEFNQLLCDSYATDHIAIRHLL 106
Query: 106 NALKLLIVKSANDIAVAI---AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+ L + + + ++ ++ + S T + G
Sbjct: 107 SHSSGLFDHADDHYLKRVLAKPTHQWTRLEQIQLYVRKKFPVVAPSDTFIYSDTG 161
>gi|52842795|ref|YP_096594.1| D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin
binding protein 4 [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|148358677|ref|YP_001249884.1| D-alanyl-D-alanine carboxypeptidase [Legionella pneumophila str.
Corby]
gi|296108233|ref|YP_003619934.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
4) [Legionella pneumophila 2300/99 Alcoy]
gi|52629906|gb|AAU28647.1| D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin
binding protein 4 [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|148280450|gb|ABQ54538.1| D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin
binding protein 4 [Legionella pneumophila str. Corby]
gi|295650135|gb|ADG25982.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein
4) [Legionella pneumophila 2300/99 Alcoy]
Length = 597
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D +G + + + + PAS KL +
Sbjct: 43 VVTDLTSGETLYKRNANRLYIPASNMKLFSEAAALMA 79
>gi|145223569|ref|YP_001134247.1| peptidoglycan glycosyltransferase [Mycobacterium gilvum PYR-GCK]
gi|315443916|ref|YP_004076795.1| cell division protein FtsI/penicillin-binding protein 2
[Mycobacterium sp. Spyr1]
gi|145216055|gb|ABP45459.1| Peptidoglycan glycosyltransferase [Mycobacterium gilvum PYR-GCK]
gi|315262219|gb|ADT98960.1| cell division protein FtsI/penicillin-binding protein 2
[Mycobacterium sp. Spyr1]
Length = 635
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 22/68 (32%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDH----------------------PWNPASLTKLM 60
A K +LD TG V+A + + P+ P S+ K++
Sbjct: 288 ASGAKNASAVVLDAKTGEVLAMSNDNTFNPAQDVSRQENRQLGNLPVSSPFEPGSVNKMI 347
Query: 61 TAYVVFSF 68
TA V
Sbjct: 348 TAAAVIEN 355
>gi|258654658|ref|YP_003203814.1| beta-lactamase [Nakamurella multipartita DSM 44233]
gi|258557883|gb|ACV80825.1| beta-lactamase [Nakamurella multipartita DSM 44233]
Length = 740
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ AS TK MT+ V+ +E K L P
Sbjct: 112 DARTHFRIASNTKTMTSAVILQLAQEGKLRLDDP 145
>gi|219920929|emb|CAQ76642.1| beta-lactamase [Klebsiella oxytoca]
Length = 275
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 234 VGDKTGGGDYGTTNDIAVIWPENHAPLVLVT 264
>gi|313681112|ref|YP_004058851.1| beta-lactamase related protein [Oceanithermus profundus DSM 14977]
gi|313153827|gb|ADR37678.1| beta-lactamase related protein [Oceanithermus profundus DSM 14977]
Length = 390
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 17/68 (25%), Gaps = 2/68 (2%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE 71
+ S +A + + G V+A PD S KL + +
Sbjct: 113 LASLAEAEKRMAALAGKKSFLV--LKNGEVLAALDPDARLAVGSTFKLSVLAALLERVGA 170
Query: 72 KKAMLTTP 79
Sbjct: 171 GGLAWEDT 178
>gi|297161281|gb|ADI10993.1| putative cell wall biosynthesis protein [Streptomyces
bingchenggensis BCW-1]
Length = 659
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 26/166 (15%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIA-------------ENYPDH--------PWNP 53
+ Y + DT TG ++A + D + P
Sbjct: 304 SAISEQVKKSKADSGYVVVQDTRTGEILALANAPGFDPNDISDANADALGNAALSDAYEP 363
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIV 113
S++KLM+ V A T + + + T L ++
Sbjct: 364 GSVSKLMSMAAVLEE---GAATWDTHVVVPNRLP--RADRAFADDIDHPTWYLTLNGVLA 418
Query: 114 KSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
KS+N + E L K +K+ + + + + G+ + + G
Sbjct: 419 KSSNIGTILATEQLGKNQKQADRILYSYLRKFGIGSYTGLGFPGET 464
>gi|294784138|ref|ZP_06749439.1| beta-lactamase [Fusobacterium sp. 3_1_27]
gi|294488208|gb|EFG35553.1| beta-lactamase [Fusobacterium sp. 3_1_27]
Length = 261
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 31/204 (15%), Positives = 60/204 (29%), Gaps = 5/204 (2%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGST 101
D AS+ KL+ + + E K L+ + ++ G
Sbjct: 35 FSVNGDKKVLSASMIKLLILAELMKKIFENKFSLSDTVMMANFMKIEGDGVLKELNTGHH 94
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
TL L+I+ S N + + L + + ++ LG
Sbjct: 95 FTLKELATLMIIVSDNQATNILIDFLGMENINQLGKELDLKETFLGRK--MMDAEARKKG 152
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+ +YT A D+++L + L+I ++
Sbjct: 153 YDNYTCADDISLLLK-LIYQEKLINKEASQLMLDILLRQQQGERLQRYLPSDIKIAHKCG 211
Query: 221 TCASGFNIVASAIQGDQSLIAVIL 244
+ N GD++ I V+L
Sbjct: 212 DLDNLENDGGIIWLGDRAYILVVL 235
>gi|284042848|ref|YP_003393188.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Conexibacter woesei DSM 14684]
gi|283947069|gb|ADB49813.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Conexibacter woesei DSM 14684]
Length = 431
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+L+ TG V+A D PAS+ KL T
Sbjct: 44 GAYVLNMTTGSVLASVRADTARIPASVEKLYTTSTAL 80
>gi|218441239|ref|YP_002379568.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Cyanothece sp. PCC 7424]
gi|218173967|gb|ACK72700.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Cyanothece sp. PCC 7424]
Length = 475
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 32 TLLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
L++ G ++ + + PAS TKL+T
Sbjct: 53 ILVETLEDGQILYGVDENQYFVPASNTKLLTTAAALR 89
>gi|88799429|ref|ZP_01115006.1| penicillin-binding protein 2 [Reinekea sp. MED297]
gi|88777739|gb|EAR08937.1| penicillin-binding protein 2 [Reinekea sp. MED297]
Length = 556
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 19/158 (12%), Positives = 34/158 (21%), Gaps = 38/158 (24%)
Query: 22 IAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTKLM 60
A ++D +TG V+A P+ + P S+ K +
Sbjct: 229 AANGGTSGSVVMMDVHTGEVLALVNQPGYNPNDRSSLEPEAMRNRAITDLFEPGSVMKPL 288
Query: 61 TAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIA 120
T + G ++ A
Sbjct: 289 TMALALEAGIVTPQSTVDT-----------------NPGRLKLGRFTIRDFRNYGALTAT 331
Query: 121 VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
I +S K Q + + G G+
Sbjct: 332 EVIKKSSNVGIVKIAQELEAENFWQGFYDFGLGENVGL 369
>gi|331005046|ref|ZP_08328450.1| Cell division protein FtsI (Peptidoglycan synthetase) [gamma
proteobacterium IMCC1989]
gi|330421101|gb|EGG95363.1| Cell division protein FtsI (Peptidoglycan synthetase) [gamma
proteobacterium IMCC1989]
Length = 467
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 19/84 (22%), Gaps = 21/84 (25%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLT 57
A LLD TG V+A P+ + P S
Sbjct: 252 AAVKAHNAASASMVLLDAKTGEVLAMVNQPSFNPNDRSRLKASALRNRAMTDQFEPGSTM 311
Query: 58 KLMTAYVVFSFLKEKKAMLTTPIT 81
K +T + +
Sbjct: 312 KPLTVMAALETGRYIPSSTIDTHP 335
>gi|269125387|ref|YP_003298757.1| beta-lactamase [Thermomonospora curvata DSM 43183]
gi|268310345|gb|ACY96719.1| beta-lactamase [Thermomonospora curvata DSM 43183]
Length = 459
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 3/47 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ D TG + P S+TK TA V + + L P
Sbjct: 112 VADVRTGRPVT---PHMRQRVGSITKTFTAAAVLQQAERGRIRLDDP 155
>gi|239933738|ref|ZP_04690691.1| carboxypeptidase [Streptomyces ghanaensis ATCC 14672]
Length = 80
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
+LD ++ ++ ++ PAS KL TA
Sbjct: 1 MVLDADSDKILWDHDGATALMPASNVKLATATAAL 35
>gi|222112453|ref|YP_002554717.1| d-alanyl-d-alanine
carboxypeptidase/d-alanyl-d-alanine-endopeptidase
[Acidovorax ebreus TPSY]
gi|221731897|gb|ACM34717.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Acidovorax ebreus TPSY]
Length = 499
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 14 SNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++ P A + +++ + D P NPAS+ KL+T Y
Sbjct: 52 ASALPPSVEAALQRAKVPREALSALVVEVEGRQPRLAHRADAPANPASVMKLVTTYAALD 111
>gi|121596225|ref|YP_988121.1| D-alanyl-D-alanine carboxypeptidase PBP3 [Acidovorax sp. JS42]
gi|120608305|gb|ABM44045.1| D-Ala-D-Ala carboxypeptidase PBP3 [Acidovorax sp. JS42]
Length = 493
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 14 SNIFPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
++ P A + +++ + D P NPAS+ KL+T Y
Sbjct: 46 ASALPPSVEAALQRAKVPREALSALVVEVEGRQPRLAHRADAPANPASVMKLVTTYAALD 105
>gi|156977582|ref|YP_001448488.1| beta-lactamase [Vibrio harveyi ATCC BAA-1116]
gi|156529176|gb|ABU74261.1| hypothetical protein VIBHAR_06370 [Vibrio harveyi ATCC BAA-1116]
Length = 283
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 26/202 (12%), Positives = 62/202 (30%), Gaps = 2/202 (0%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
+ D + S K + + S + +K + + G T
Sbjct: 50 WDYRGDERFPMMSTFKTLACATMLSDMDNEKLDKNATAKVEERNMVVWSPVMDRMAGQTT 109
Query: 103 TLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
+++A + ++ S N A + + + F++ + + + L A+ +
Sbjct: 110 RIEHACEATMLMSDNTAANIVLRSIGGPRGVTTFLRSVGDKATRLDRFEPRLNEANPGDK 169
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
T + L ++ D Y Q+K K + +V + ++G
Sbjct: 170 RDTTTPNAMVNTLHTLLEGDALSYESRIQLKIWMQDNKVSDSLMRSVLPKGWSIADRSGA 229
Query: 221 TCASGFNIVASAIQGDQSLIAV 242
I A + + I +
Sbjct: 230 GGFGSRGITAMIWKENHKPIYI 251
>gi|306826302|ref|ZP_07459636.1| penicillin-binding protein 1B [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304431578|gb|EFM34560.1| penicillin-binding protein 1B [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 833
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 32 TLLDTNTGHVI-------AENY-----PDHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + A + +
Sbjct: 434 VLMDNQTGAILGFVGGRNYQENQNNHAIDTKRSPASTTKPILAYGIAIDQGLMGSASILS 493
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ + ++ G + + + K +++ M
Sbjct: 494 NYPTNFSNGNPIMYVNSPGTGMMTLGEALNYSWNIPAYW--TYRTLREKGVDVKGYMEKM 551
Query: 139 NNTSKNLGLSATHF 152
G+ +
Sbjct: 552 GYEIPEYGIESLPM 565
>gi|295822207|gb|ADG36757.1| extended-spectrum class A beta-lactamase [Rahnella sp. 371-Carrot]
gi|295822211|gb|ADG36759.1| extended-spectrum class A beta-lactamase [Rahnella sp. 377-Radish]
gi|295822231|gb|ADG36769.1| extended-spectrum class A beta-lactamase [Rahnella sp. 59-Radish]
gi|295822241|gb|ADG36774.1| extended-spectrum class A beta-lactamase [Rahnella aquatilis]
Length = 218
Score = 38.0 bits (86), Expect = 1.9, Method: Composition-based stats.
Identities = 29/203 (14%), Positives = 55/203 (27%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + KK +LT + + ++ + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKESEVKKNLLTQHVALKQSDLVNYNPITEKHLNDGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + S N + E L K + + + + + L + A
Sbjct: 65 IGELAAAALQYSDNAAMNKLIEHLGGPHKVTDYARTLGDKTFRLDRTEPTLNTAIPGDDR 124
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+ L Q+ + A G KTG
Sbjct: 125 DTTSPRAMALSLQHATLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWVVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ L+ V
Sbjct: 185 DYGTTNDIAVIWPENKAPLVLVT 207
>gi|331265555|ref|YP_004325185.1| penicillin-binding protein 1B [Streptococcus oralis Uo5]
gi|326682227|emb|CBY99844.1| penicillin-binding protein 1B [Streptococcus oralis Uo5]
Length = 835
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 32 TLLDTNTGHVI-------AENY-----PDHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PAS TK + AY + A + +
Sbjct: 434 VLMDNQTGAILGFVGGRNYQENQNNHAIDTKRSPASTTKPILAYGIAIDQGLMGSASILS 493
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ + ++ G + + + K +++ M
Sbjct: 494 NYPTNFSNGNPIMYVNSPGTGMMTLGEALNYSWNIPAYW--TYRTLREKGVDVKGYMEKM 551
Query: 139 NNTSKNLGLSATHF 152
G+ +
Sbjct: 552 GYEIPEYGIESLPM 565
>gi|320354468|ref|YP_004195807.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Desulfobulbus propionicus DSM 2032]
gi|320122970|gb|ADW18516.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-
endopeptidase [Desulfobulbus propionicus DSM 2032]
Length = 422
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 10/71 (14%), Positives = 19/71 (26%), Gaps = 7/71 (9%)
Query: 17 FPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF-----SFLK 70
+ + D +G ++ D P PAS+ K+ T +
Sbjct: 24 AATCAAMADLVAQGAYGVADA-SGRIVDSCNLDQPLVPASVLKIATVSAALSLLGPDYRF 82
Query: 71 EKKAMLTTPIT 81
+ L
Sbjct: 83 RTEVHLDDQHN 93
>gi|320589781|gb|EFX02237.1| beta-lactamase family protein [Grosmannia clavigera kw1407]
Length = 440
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 38 TGHVI--AENYP---DHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G ++ E D ++ ASLTKL T + + K LT
Sbjct: 101 NGTILPSYEQEEATVDTIYDMASLTKLFTTIIALQQMDAGKMRLTD 146
>gi|291302147|ref|YP_003513425.1| beta-lactamase [Stackebrandtia nassauensis DSM 44728]
gi|290571367|gb|ADD44332.1| beta-lactamase [Stackebrandtia nassauensis DSM 44728]
Length = 374
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 28 LPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ D ++G ++ PD S+TK +TA + ++ L P
Sbjct: 64 ASAVGVADVDSGRPMS---PDFEHRIGSITKTVTAVAILRQVEAGNLDLDDP 112
>gi|294507091|ref|YP_003571149.1| Penicillin-binding protein 4 [Precursor] [Salinibacter ruber M8]
gi|294343419|emb|CBH24197.1| Penicillin-binding protein 4 [Precursor] [Salinibacter ruber M8]
Length = 477
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 15/81 (18%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENY 46
R+ +++ + + P ++A+ ++ D ++ E
Sbjct: 3 RRCVLVAGILLAVVSLPTEALAQPLPARIDSLLQERRAAHAFWGVSIYDLEGDSLLYERN 62
Query: 47 PDHPWNPASLTKLMTAYVVFS 67
D + PAS KL T
Sbjct: 63 GDRGFLPASNQKLFTTAAALD 83
>gi|219920997|emb|CAQ76676.1| beta-lactamase [Klebsiella oxytoca]
Length = 275
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 33/211 (15%), Positives = 57/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWV 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 234 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 264
>gi|219920927|emb|CAQ76641.1| beta-lactamase [Klebsiella oxytoca]
Length = 271
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESHPDVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 234 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 264
>gi|83815607|ref|YP_445208.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Salinibacter ruber DSM 13855]
gi|83757001|gb|ABC45114.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Salinibacter ruber DSM 13855]
Length = 477
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 15/81 (18%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENY 46
R+ +++ + + P ++A+ ++ D ++ E
Sbjct: 3 RRCVLVAGILLAVVSLPTEALAQPLPARIDSLLQERRAAHAFWGVSIYDLEGDSLLYERN 62
Query: 47 PDHPWNPASLTKLMTAYVVFS 67
D + PAS KL T
Sbjct: 63 GDRGFLPASNQKLFTTAAALD 83
>gi|119774879|ref|YP_927619.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella amazonensis
SB2B]
gi|119767379|gb|ABL99949.1| Serine-type D-Ala-D-Ala carboxypeptidase [Shewanella amazonensis
SB2B]
Length = 554
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+L+I +D T VI + + PAS+ KL+ A
Sbjct: 104 IAPAWYLAIKPKQTNVAVLAVDLKTQQVIISDNSERAMLPASVQKLLLALAA 155
>gi|315022681|gb|EFT35706.1| D-alanyl-D-alanine carboxypeptidase [Riemerella anatipestifer
RA-YM]
Length = 468
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 13/80 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTL-------------LDTNTGHVIAENYP 47
M +FL+ I S + +K L + G+ I E
Sbjct: 3 MTKFLIFILTFFYSLGIAQSIKDKLDKATKAFLNSPKMYAANMSFYVADENGNFIYEYQG 62
Query: 48 DHPWNPASLTKLMTAYVVFS 67
+ + AS K+ TA
Sbjct: 63 NKGLSTASTQKIFTAATALE 82
>gi|219920923|emb|CAQ76639.1| beta-lactamase [Klebsiella oxytoca]
gi|219920925|emb|CAQ76640.1| beta-lactamase [Klebsiella oxytoca]
gi|219920953|emb|CAQ76654.1| beta-lactamase [Klebsiella oxytoca]
Length = 275
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESHPDVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 234 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 264
>gi|313200236|ref|YP_004038894.1| peptidoglycan glycosyltransferase [Methylovorus sp. MP688]
gi|312439552|gb|ADQ83658.1| Peptidoglycan glycosyltransferase [Methylovorus sp. MP688]
Length = 572
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 33/143 (23%), Gaps = 25/143 (17%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP---------------WNPASL 56
K +LD TG V+A P++P + P S
Sbjct: 233 LAHAVEQFKAKAGAAIVLDARTGEVLAMANLPTYNPNNPVNMAGRSRNRAIVDTFEPGST 292
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K TA T I + P+ + +++ S
Sbjct: 293 LKPFTAAAALES---GHFTPDTHIQTAPGILRIGPATIH--DAHPQGMLTVAQVIQKSSN 347
Query: 117 NDIAVAIAESLCKTEKKFVQHMN 139
A + HM
Sbjct: 348 VGSAKMALTLEPQYLWGIYNHMG 370
>gi|253998166|ref|YP_003050229.1| peptidoglycan glycosyltransferase [Methylovorus sp. SIP3-4]
gi|253984845|gb|ACT49702.1| Peptidoglycan glycosyltransferase [Methylovorus sp. SIP3-4]
Length = 576
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 33/143 (23%), Gaps = 25/143 (17%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP---------------WNPASL 56
K +LD TG V+A P++P + P S
Sbjct: 237 LAHAVEQFKAKAGAAIVLDARTGEVLAMANLPTYNPNNPVNMAGRSRNRAIVDTFEPGST 296
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K TA T I + P+ + +++ S
Sbjct: 297 LKPFTAAAALES---GHFTPDTHIQTAPGILRIGPATIH--DAHPQGMLTVAQVIQKSSN 351
Query: 117 NDIAVAIAESLCKTEKKFVQHMN 139
A + HM
Sbjct: 352 VGSAKMALTLEPQYLWGIYNHMG 374
>gi|37520164|ref|NP_923541.1| beta-lactamase [Gloeobacter violaceus PCC 7421]
gi|35211157|dbj|BAC88536.1| gll0595 [Gloeobacter violaceus PCC 7421]
Length = 355
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
++ +G IA ++ AS+ KL A + + + LT +T+
Sbjct: 67 GAAIVHVESGRAIALKGA-ERFSMASVYKLPIAIAILDMVDRGELDLTRKLTV 118
>gi|238792163|ref|ZP_04635798.1| Beta-lactamase [Yersinia intermedia ATCC 29909]
gi|238728400|gb|EEQ19919.1| Beta-lactamase [Yersinia intermedia ATCC 29909]
Length = 294
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 32/198 (16%), Positives = 57/198 (28%), Gaps = 3/198 (1%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S KLM A V + + +L+ IT ++ + MT+
Sbjct: 69 QRFPFCSTFKLMLAAAVLGRSQSQPNLLSKHITYHESDLLAYAPITRKHLAQGMTVAELC 128
Query: 109 KLLIVKSANDIAVAIAESLC--KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
I S N A + + L +F + + + + L A T
Sbjct: 129 AATIQYSDNTAANLLIKQLGGLAMVNQFARSIGDQTFRLDRWEPELNTALPNDPRDTTTP 188
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF-TCASG 225
A A ++ + D Q+ T A G KTG +
Sbjct: 189 AAMAASVNKLVLGDALAAPQREQLALWLKGNTTGAATIRAGAPTDWVIGDKTGSGDYGTT 248
Query: 226 FNIVASAIQGDQSLIAVI 243
++ L+ V+
Sbjct: 249 NDVAVLWPAKGAPLVLVV 266
>gi|319652567|ref|ZP_08006682.1| hypothetical protein HMPREF1013_03296 [Bacillus sp. 2_A_57_CT2]
gi|317395821|gb|EFV76544.1| hypothetical protein HMPREF1013_03296 [Bacillus sp. 2_A_57_CT2]
Length = 474
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
P+ ASL+K MTA V + + L P
Sbjct: 66 TPFPIASLSKSMTALAVLQLADKGQIDLDAPY 97
>gi|1326008|emb|CAA89922.1| unknown [Saccharomyces cerevisiae]
Length = 983
Score = 38.0 bits (86), Expect = 2.0, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 1/167 (0%)
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTA 167
K + + + + L L F N G
Sbjct: 3 KTITHGQSWGARRIHSHFYITIFTITCIRIGQYKLALYLDPYRFYNITGSQIVRLKGQRP 62
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ + F + N + G+ T +
Sbjct: 63 EYRKRIFAHSYRHSSRIGLNFPSRRRYSNYVDRGNIHKHTRLPPQFIGLNTVESAQPSIL 122
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
++G ++I+ IL A + K S+ + D K I
Sbjct: 123 RDFVDLRGGHTVISKILIANNGIAAVKEMRSIRKWAYETFNDEKIIQ 169
>gi|292490618|ref|YP_003526057.1| peptidoglycan glycosyltransferase [Nitrosococcus halophilus Nc4]
gi|291579213|gb|ADE13670.1| Peptidoglycan glycosyltransferase [Nitrosococcus halophilus Nc4]
Length = 567
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 19/76 (25%), Gaps = 21/76 (27%)
Query: 25 TNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTKLMTAY 63
+ +LD +TG V+A P+ + P S K T
Sbjct: 241 NARAGSLVILDVDTGEVLAMVNRPSYNPNDRSQLKSHLYRNRAVTDLFEPGSTIKPFTIG 300
Query: 64 VVFSFLKEKKAMLTTP 79
V K
Sbjct: 301 VALESGKYHPHTPIDT 316
>gi|221229298|gb|ABO61004.2| L2 beta-lactamase [Stenotrophomonas maltophilia]
Length = 301
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 50/198 (25%), Gaps = 2/198 (1%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
G I + D + S K + V S + L T + I+ +
Sbjct: 64 NGRRIGGHRQDERFPMCSTFKSLLVAHVLSLADAGRVSLDTRVPIAGKDLLSYAPVARRH 123
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSATHFMNA 155
G +T+ + + + S N A + F++ ++ +
Sbjct: 124 VGKDLTVRDLCRGTLTTSDNTAANLLLEVVGGPSALTAFLRGQGDSITRNDRNEPDVNLF 183
Query: 156 HGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADG 215
A L+ + Q Q I + A G
Sbjct: 184 VKGDPRDTTGPAAMATSLARFAVGNGLQPASRQQFADWLIDNQTGDACLRAGLGTRWRVG 243
Query: 216 MKTGFTCASGFNIVASAI 233
KTG N +A
Sbjct: 244 DKTGSNGDDTRNDIAVLW 261
>gi|325067909|ref|ZP_08126582.1| D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al
anine-endopeptidase [Actinomyces oris K20]
Length = 463
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+++D TG + + PAS KL+TA+ S +
Sbjct: 93 TASVVDVATGEELLDRSAASGVTPASTNKLLTAWAALSSMGPGH 136
>gi|268323877|emb|CBH37465.1| conserved hypothetical protein, beta-lactamase family [uncultured
archaeon]
Length = 414
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKK 98
G V D P AS+TKL TA + +E L P ISK K
Sbjct: 86 GQVPMTK--DTPIYIASITKLYTATAIMKLYEEGALSLDDP--ISKYLPTDLIRGIHVYK 141
Query: 99 GSTMTLDNALKLLIVKSANDI 119
+ + +K L+ ++
Sbjct: 142 EKDYSNEITIKQLLSHTSGIA 162
>gi|256862186|gb|ACV32628.1| beta-lactamase Tem170 [Escherichia coli]
Length = 231
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 34/219 (15%), Positives = 64/219 (29%), Gaps = 6/219 (2%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
P+ + S K++ V S + + L I S+N + MT+
Sbjct: 5 PEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRE 64
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
I S N A + ++ ++ F+ +M + L A +
Sbjct: 65 LCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTT 124
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
A L + + Q+ K + K+G
Sbjct: 125 MPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERG 184
Query: 225 GFNIVASAIQGDQS-LIAVI--LGAL-DRNTRNKVSASL 259
I+A+ + I VI G+ + RN+ A +
Sbjct: 185 SRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEI 223
>gi|255279728|ref|ZP_05344283.1| putative beta-lactamase [Bryantella formatexigens DSM 14469]
gi|255269501|gb|EET62706.1| putative beta-lactamase [Bryantella formatexigens DSM 14469]
Length = 477
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 28/216 (12%), Positives = 54/216 (25%), Gaps = 20/216 (9%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
L D ++G E ASL KL A ++ + T I S +A
Sbjct: 147 SVYLKDLSSGRT-MEINEHS-MESASLIKLYIAGAIYEQIALGNLQETDTILSSLDAMIT 204
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+ + ++ L +S + + F
Sbjct: 205 --------VSDNESSNVLVRQLCDESGDFQTGLAKVNDFIARYGFSST--------QQVN 248
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
+ V T+ + + H++ + + ++ N G
Sbjct: 249 GIADPSLWVSDGRVNMTSPADCGRLLEMIYNGELVSHFYSFRFETLLNRQQVNYKIPDGL 308
Query: 210 FLGADGM-KTGFTCASGFNIVASAIQGDQSLIAVIL 244
G KTG + + I I+
Sbjct: 309 PEGVHISHKTGEVDDTENDAAIIYTPYG-DYIFCIM 343
>gi|51892706|ref|YP_075397.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
gi|51856395|dbj|BAD40553.1| putative beta-lactamase [Symbiobacterium thermophilum IAM 14863]
Length = 261
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 1/59 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE 88
+ D TG A P + AS K+ A V ++ L I +
Sbjct: 28 GVYVTDLATGRS-AGLNPMAEFYAASTIKVPIAMAVLWLADRRRISLDQTIAYQPEDYQ 85
>gi|42391699|dbj|BAD08689.1| beta-lactamase GES-4 [Klebsiella pneumoniae]
gi|42543944|dbj|BAD11026.1| beta-lactamase GES-4 [Klebsiella pneumoniae]
Length = 287
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRTAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVKWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMSDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|167036901|ref|YP_001664479.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115320|ref|YP_004185479.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855735|gb|ABY94143.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928411|gb|ADV79096.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 422
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 32/241 (13%), Positives = 73/241 (30%), Gaps = 25/241 (10%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D NTG E + AS K+ + +++ + + K + ++ E +
Sbjct: 198 IDLNTGQT-FEINGYDSFIAASTYKVPLNFYLYTLITDGKIDPNMKVQYTQADYEGGAGS 256
Query: 94 STFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
S T+ + I +S N + I +++ M +
Sbjct: 257 IQADPVGSYYTIRELSRRSIEESDNIASNMIMR--IVGRDNYIKFMEKLGAYV------- 307
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ + T+ RDM+ + + D+ + + N + G
Sbjct: 308 -----IPYSNNVTSPRDMS-MYMKNLLDYVNAHPDTAGELMYYLKNTIYNDRISYPIPDG 361
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-----GALDRNTRN--KVSASLLSMGFY 265
+ ++ N A + I +L G+ D + + ++ F
Sbjct: 362 IEVAHKIGNLSNVVNDAAIVFHPTRPYILTVLANNVDGSDDSYAYTVIRQISKMV-YDFQ 420
Query: 266 N 266
N
Sbjct: 421 N 421
>gi|295086650|emb|CBK68173.1| Alpha-mannosidase [Bacteroides xylanisolvens XB1A]
Length = 855
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 25/273 (9%), Positives = 66/273 (24%), Gaps = 37/273 (13%)
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQ 136
S+ + + I+ + +A ++ K +
Sbjct: 270 DDDWHFSQEDIRVNLMWGSQVLQKIAQEVRTSENRIIMAEKMSVMAHLKNGYTCLKADMD 329
Query: 137 HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
T + + +G+ + + + + +E
Sbjct: 330 EAWRTLMMAQHHDSWIVPYNGL----------NRQGTWADQIKRWTDDTNRISDRIIE-- 377
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
++ F G + G + + + ++V+L N+
Sbjct: 378 --------ASIQNFDDLSGSQQGDINQQWVRLFNTLGVERKEPVSVLLSLESENSDFV-- 427
Query: 257 ASLLSM------GFYNKTDRKK---INYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYN 307
+ F KK I F + + +++ +++
Sbjct: 428 --ICDWKGKEIACFVESEGEKKRLFFEAEIPPFGYSTYCIKKKEVGKKIVAGSEKVSESK 485
Query: 308 TQMK----EAKDKESHFIDFEKITLLKNKITKK 336
+ D D K ++K+ I KK
Sbjct: 486 KVNEQEYVIENDMYKVVFDLSKGGVIKSLIAKK 518
>gi|227547903|ref|ZP_03977952.1| possible D-alanyl-D-alanine carboxypeptidase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227080036|gb|EEI17999.1| possible D-alanyl-D-alanine carboxypeptidase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 200
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMT 61
+ D TG + E+ P+ PAS TKL+T
Sbjct: 81 ITDAATGETVFESAPNDALRPASSTKLLT 109
>gi|268611934|ref|ZP_06145661.1| hypothetical beta-lactamase precursor (penicillin-binding protein)
[Ruminococcus flavefaciens FD-1]
Length = 461
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 8/97 (8%)
Query: 26 NKLPYYTLLDTNTGHVIAEN------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++D ++ V+ EN D P+ S++K TA + ++ K L +P
Sbjct: 52 IPAMAVAVVDKDS--VLFENTYGNCENADLPFIIGSMSKSFTAIAIMQLYEQGKIELESP 109
Query: 80 ITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
I + S++ N+ + + L N +
Sbjct: 110 IDEYIDTSKWFDENTDHGRITVKDLLNHTSGITTYQT 146
>gi|222152213|ref|YP_002561388.1| exported protein [Streptococcus uberis 0140J]
gi|222113024|emb|CAR40336.1| putative exported protein [Streptococcus uberis 0140J]
Length = 428
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 18/199 (9%), Positives = 52/199 (26%), Gaps = 3/199 (1%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D AS+ KL T Y V + ++ K L + + + + G
Sbjct: 222 NADKLMYSASIAKLATLYYVQNKIETGKTSLNQTLKYTDQVNHFKGDYDPSGSGKLPKTS 281
Query: 106 NALKLLIVKSANDIA---VAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ + +A +A ++ + +++ +S ++ ++
Sbjct: 282 DNENYTVDDLLKAVAQHSDNVATNILGYYLANQYDRDFSTQMTAISGINWDMEERMLSSK 341
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
+ + + + + + + + +
Sbjct: 342 AAANVMESIYYQNGPIVSYLTNTDFDNQRISKNIAVPVAHKIGDAYDYKHDVAIVYSDSP 401
Query: 223 ASGFNIVASAIQGDQSLIA 241
+A D + IA
Sbjct: 402 FILSIFSENASYDDITAIA 420
>gi|169596763|ref|XP_001791805.1| hypothetical protein SNOG_01151 [Phaeosphaeria nodorum SN15]
gi|160707369|gb|EAT90800.2| hypothetical protein SNOG_01151 [Phaeosphaeria nodorum SN15]
Length = 556
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
E D + AS+TK T + K L P
Sbjct: 91 EVNGDALYRIASITKTFTVLGILYQHKAGNLSLDDP 126
>gi|114764846|ref|ZP_01444028.1| penicillin-binding protein 2 [Pelagibaca bermudensis HTCC2601]
gi|114542732|gb|EAU45755.1| penicillin-binding protein 2 [Roseovarius sp. HTCC2601]
Length = 625
Score = 38.0 bits (86), Expect = 2.1, Method: Composition-based stats.
Identities = 10/98 (10%), Positives = 21/98 (21%), Gaps = 4/98 (4%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+A + P S K++TA + E K +
Sbjct: 300 LASKTVQDAYPPGSTFKIVTALAALEA---GLIRPDETVYC-PGHMEIGSRRFHCWKRAG 355
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
N + L + + + +
Sbjct: 356 HGHVNLEQSLRDSCDVYYYDLALKVGIDRIAEMGRKLG 393
>gi|323489176|ref|ZP_08094408.1| D-alanyl-D-alanine carboxypeptidase [Planococcus donghaensis
MPA1U2]
gi|323397063|gb|EGA89877.1| D-alanyl-D-alanine carboxypeptidase [Planococcus donghaensis
MPA1U2]
Length = 486
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+TG I +++ D PAS KL TA F
Sbjct: 54 ADTGEQIYDHFGDTRLIPASNMKLFTAAAAFE 85
>gi|313902169|ref|ZP_07835578.1| beta-lactamase [Thermaerobacter subterraneus DSM 13965]
gi|313467569|gb|EFR63074.1| beta-lactamase [Thermaerobacter subterraneus DSM 13965]
Length = 378
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 30/230 (13%), Positives = 59/230 (25%), Gaps = 21/230 (9%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P + AS K+ V + +A + I + +
Sbjct: 150 DLQTGAT-WGINEREPIHAASTIKVPLVLYVNHQVAAGRARMDDRIVYEPDRDLTGGAGI 208
Query: 95 TF---KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATH 151
G + +L L I S N + ++ + LG
Sbjct: 209 LQRDGFPGKSYSLRVLTNLSITISDNVTTNMLFRHF------GKDNVGEFMRRLGGEVIF 262
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+TARDM I + Q+ ++ +
Sbjct: 263 -------PGGRRISTARDMGIYVEAVLDFARQHPLLGGRMLDDMGHAIFHVGLPGELPPD 315
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIAVIL--GALDRNTRNKVSASL 259
K G ++ + + + +L G + + + A +
Sbjct: 316 VFVAHKEGDIEGVADDVGIVFGR--RPFVLAVLSKGVDNIDQGFEDIARI 363
>gi|148265527|ref|YP_001232233.1| Beta-lactamase [Geobacter uraniireducens Rf4]
gi|146399027|gb|ABQ27660.1| Beta-lactamase [Geobacter uraniireducens Rf4]
Length = 262
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 12/147 (8%), Positives = 35/147 (23%), Gaps = 7/147 (4%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLPYYTLLDTNTGHVIAENY---PDHPWNPASL 56
F ++ + S+ F + + ++ + G + PAS
Sbjct: 7 FFALLLFTLTSSAFAEDAGIARLFKEKNIRGTIVISSLDGATTYSHNDERAATRMLPAST 66
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
K+ + + K + + + + + L
Sbjct: 67 FKIPNTLIALEEGAIADEKVLKWDGTDKGVAAWNKDQTLESAFKSSCIWFYQDLARRVGT 126
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSK 143
+A+ + + N +
Sbjct: 127 ERYNAWLAKLQYGNGQAGPELSNFWLE 153
>gi|238790175|ref|ZP_04633951.1| Beta-lactamase [Yersinia frederiksenii ATCC 33641]
gi|238721713|gb|EEQ13377.1| Beta-lactamase [Yersinia frederiksenii ATCC 33641]
Length = 297
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 29/198 (14%), Positives = 52/198 (26%), Gaps = 3/198 (1%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S K M A V + + +L I ++ + MT+
Sbjct: 69 QRFPFCSTFKFMLAAAVLGKSQTQPGLLDKHIKYHESDLLSYAPITRKNLAHGMTVSQLC 128
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + + + F + + + L A T
Sbjct: 129 AATMQYSDNTAANLLIKELGGVASVNAFARSIGDQVFRLDRLEPDLNTALPNDPRDTTTP 188
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF-TCASG 225
A ++ + D Q+ NT A G KTG +
Sbjct: 189 AAMADSMNKLVLGDALPVAQREQLTLWLKGNTTGANTIQAGAPADWIVGDKTGSGDYGTT 248
Query: 226 FNIVASAIQGDQSLIAVI 243
+I ++ VI
Sbjct: 249 NDIAVLWPTQGAPIVLVI 266
>gi|311897753|dbj|BAJ30161.1| putative peptidase S13 family protein [Kitasatospora setae KM-6054]
Length = 513
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTK 58
+ + + D TG + P PAS TK
Sbjct: 117 TALGGTVQDKALGALNFAVADAATGEFLFGANEATPATPASTTK 160
>gi|167039606|ref|YP_001662591.1| peptidoglycan binding domain-containing protein [Thermoanaerobacter
sp. X514]
gi|300915144|ref|ZP_07132459.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp.
X561]
gi|307725068|ref|YP_003904819.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp.
X513]
gi|166853846|gb|ABY92255.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp.
X514]
gi|300888868|gb|EFK84015.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp.
X561]
gi|307582129|gb|ADN55528.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter sp.
X513]
Length = 422
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 32/241 (13%), Positives = 73/241 (30%), Gaps = 25/241 (10%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D NTG E + AS K+ + +++ + + K + ++ E +
Sbjct: 198 IDLNTGQT-FEINGYDSFIAASTYKVPLNFYLYTLITDGKIDPNMKVQYTQADYEGGAGS 256
Query: 94 STFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
S T+ + I +S N + I +++ M +
Sbjct: 257 IQADPVGSYYTIRELSRRSIEESDNIASNMIMR--IVGRDNYIKFMEKLGAYV------- 307
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ + T+ RDM+ + + D+ + + N + G
Sbjct: 308 -----IPYSNNVTSPRDMS-MYMKNLLDYVNAHPDTAGELMYYLKNTIYNDRISYPIPDG 361
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-----GALDRNTRN--KVSASLLSMGFY 265
+ ++ N A + I +L G+ D + + ++ F
Sbjct: 362 IEVAHKIGNLSNVVNDAAIVFHPTRPYILTVLANNVDGSDDSYAYTVIRQISKMV-YDFQ 420
Query: 266 N 266
N
Sbjct: 421 N 421
>gi|227498277|ref|ZP_03928427.1| beta-lactamase [Acidaminococcus sp. D21]
gi|323142377|ref|ZP_08077208.1| beta-lactamase [Phascolarctobacterium sp. YIT 12067]
gi|5596421|emb|CAB51471.1| beta-lactamase [Acidaminococcus fermentans]
gi|226903739|gb|EEH89657.1| beta-lactamase [Acidaminococcus sp. D21]
gi|322413140|gb|EFY04028.1| beta-lactamase [Phascolarctobacterium sp. YIT 12067]
Length = 284
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 35/279 (12%), Positives = 74/279 (26%), Gaps = 24/279 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPF--------LSIAETNKLPYYTL----LDTNTGHVIAENYPD 48
M++F + + +F L++A+ + +D G I PD
Sbjct: 1 MKKFCFLFLIICGLMVFCLQDCQARQKLNLADLENKYNAVIGVYAVDMENGKKICYK-PD 59
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
++ S K+ TA + L S + MTL
Sbjct: 60 TRFSYCSTHKVFTAAELLRQKNTS--DLNEIRKFSAEDILSYAPITKDHVADGMTLAEIC 117
Query: 109 KLLIVKSANDIAVAIAESL--CKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A I + + + K ++++ + + + + T
Sbjct: 118 SASLRWSDNTAANLILQEIGGVENFKVALKNIGDKTTKPARNEPELNLFNPKDNRDTSTP 177
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF-TCASG 225
+ + L I D + A K+G +
Sbjct: 178 RQMVKNLQVYIFGDILSDDKKKLLIDWMSDNSITDTLIKAETPQGWKVIDKSGSGDYGAR 237
Query: 226 FNIVASAIQGDQSLIAVIL------GALDRNTRNKVSAS 258
+I + ++ I+ A + +A
Sbjct: 238 NDIAVIYPPNRKPIVMAIMSRRTEKNAKSDDAMIAEAAK 276
>gi|310693479|gb|ADP05099.1| CTX-M-15 type extended-spectrum beta-lactamase [Salmonella
enterica]
gi|315076119|gb|ADT78700.1| CTX-M-15 type extended-spectrum beta-lactamase [Salmonella enterica
subsp. enterica serovar Enteritidis]
Length = 205
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 33/202 (16%), Positives = 53/202 (26%), Gaps = 11/202 (5%)
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M A V + + +L + I K+ + TM+L
Sbjct: 1 ERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVNGTMSLAELS 60
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTA 167
+ S N + + + L T + T+
Sbjct: 61 AAALQYSDNVAMNKLIAHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDPRDTTSP 120
Query: 168 RDMAILSWR-----IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
R MA D + +KG A G KTG
Sbjct: 121 RAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQ----AGLPASWVVGDKTGSGG 176
Query: 223 ASGFNIVASAIQGDQ-SLIAVI 243
N +A D+ LI V
Sbjct: 177 YGTTNDIAVIWPKDRAPLILVT 198
>gi|223469166|gb|ACM89982.1| class A beta-lactamase [Burkholderia pseudomallei]
Length = 295
Score = 38.0 bits (86), Expect = 2.2, Method: Composition-based stats.
Identities = 39/272 (14%), Positives = 80/272 (29%), Gaps = 22/272 (8%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLP---------------YYTLLDTNTGHVIAENYPD 48
+ I+ ++ P A+ + LDT TG I + D
Sbjct: 11 LVAAISTPLIGACAPLRGQAKNVAAAERQLRELESTFDGRLGFVALDTATGARI-AHRGD 69
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S +K+M V + + A+L I +K + G+ M++
Sbjct: 70 ERFPFYSTSKMMLCAAVLARSAGEPALLQRRIAYAKGDLIRYSPITEQHVGAGMSVAELC 129
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ S N A + +T + + + + + L A + T
Sbjct: 130 AATLQYSDNTAANLLIALLGGPQTVTAYARSIGDATFRLDRREPELNTALPGDERDTTTP 189
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGF 226
A A + + D Q+ + K A KTG
Sbjct: 190 AAMAASVHRLLVGDALGAAQRAQLNAWMLGNKTGDARIRAGVPADWRVADKTGTGDYGTA 249
Query: 227 NIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
N + A ++ ++ ++ + + R+
Sbjct: 250 NDIGVAYPPNRAPIVFIVYTTMRNPNAQARDD 281
>gi|305407951|dbj|BAJ15908.1| beta-lactamase penicillin binding protein [Rhodococcus opacus]
Length = 317
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 54/214 (25%), Gaps = 4/214 (1%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
++ TG V + D + S K + V ++ L + I
Sbjct: 74 VNPATGEV-YSHRGDERFAMCSTFKAYASAAVLRKTEDGSTSLDKTVVIEPGDLVENSPV 132
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATH 151
+ G+ MTL + + +S N + + + + + + S L T
Sbjct: 133 TAAAAGTPMTLAQIAEAALTQSDNTAGNYLLREIGGPQAVTDLARDVGDGSTRLDRWETE 192
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T + D Q+ K A
Sbjct: 193 LNTAFRDDPRDTTTPNGLAQGFRALLLGDALDTASRDQLLEWMRASKTSDKRMRAGLPTG 252
Query: 212 GADGMKTGFTCASGFNIVASAIQ-GDQSLIAVIL 244
KTG N A ++ IL
Sbjct: 253 WTATDKTGGGGFGTANDAGVAWSPDGAPIVLAIL 286
>gi|149912393|ref|ZP_01900940.1| beta-lactamase [Moritella sp. PE36]
gi|149804526|gb|EDM64611.1| beta-lactamase [Moritella sp. PE36]
Length = 84
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVF 66
S K++ V
Sbjct: 66 MMSTFKVLLCGAVL 79
>gi|153840447|ref|ZP_01993114.1| beta-lactamase TEM [Vibrio parahaemolyticus AQ3810]
gi|149745890|gb|EDM57020.1| beta-lactamase TEM [Vibrio parahaemolyticus AQ3810]
Length = 98
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 11/74 (14%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLMTAYVVF 66
S K++ V
Sbjct: 66 MMSTFKVLLCGAVL 79
>gi|52841846|ref|YP_095645.1| beta-lactamase AmpS [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|52628957|gb|AAU27698.1| beta-lactamase AmpS [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
Length = 280
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 21/203 (10%), Positives = 49/203 (24%), Gaps = 11/203 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVI--AENYPDHPWNPASLTK 58
M++ ++ + +L + + V+ N D ++PAS K
Sbjct: 15 MKKIIIFLCTGLLFCV-STWAQGTCFLAK-------ENQTVLKREGNDCDQRYSPASTFK 66
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ + + F K L K Y + T D+ + +
Sbjct: 67 IALSLMGFDSGILKD-ELHPEWPYKKEYELYLNVWKYPQNPHTWIRDSCVWYSQALTRQL 125
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+ + +N GL+ ++ + + + +
Sbjct: 126 GMKRFKGYVDAFHYGNQDVSGDRGQNNGLTHAWLSSSLSISPTEQIQFLQKIIYKKLPVS 185
Query: 179 TDFPQYMHYFQIKGLEIKGKKYP 201
G K
Sbjct: 186 QKAYIMTKNIMYIQELPGGWKLY 208
>gi|328881793|emb|CCA55032.1| Cell division protein FtsI [Streptomyces venezuelae ATCC 10712]
Length = 589
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 26/151 (17%)
Query: 30 YYTLLDTNTGHVIAENYP---------------------DHPWNPASLTKLMTAYVVFSF 68
Y + +T TG V+A + P S +K+M+ V
Sbjct: 249 YVVVQNTRTGEVLAMANAPGFDPNDLSAANAAAMGNAALQDAYEPGSTSKVMSMAAVLEE 308
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
KA T +T+ T L ++ KS+N + L
Sbjct: 309 ---GKATPDTHVTVPNRLH--RGDRLFKDDVDHETWYLTLNGVLAKSSNIGTILATGQLG 363
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
T+ + + +++ + G+ + ++ G
Sbjct: 364 ATQAESNKVLHSYLRKFGMGSPTGLDYPGET 394
>gi|227503274|ref|ZP_03933323.1| possible peptidoglycan glycosyltransferase [Corynebacterium
accolens ATCC 49725]
gi|227075777|gb|EEI13740.1| possible peptidoglycan glycosyltransferase [Corynebacterium
accolens ATCC 49725]
Length = 621
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 23/93 (24%), Gaps = 27/93 (29%)
Query: 31 YTLLDTNTGHVIAENYPDH------------------------PWNPASLTKLMTAYVVF 66
+LD TG V+A D P+ P S+ K++TA
Sbjct: 280 AVVLDAATGQVLAMANTDTVDPNKNIEDQLKEGKDFENRSISHPYEPGSVAKIVTAAAAL 339
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99
+ + + +
Sbjct: 340 QE---GITTPDEVHQVPGSIDMAGVTVNDAWPH 369
>gi|307292716|ref|ZP_07572562.1| Beta-lactamase [Sphingobium chlorophenolicum L-1]
gi|306880782|gb|EFN11998.1| Beta-lactamase [Sphingobium chlorophenolicum L-1]
Length = 309
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 4/219 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
L+D+ G +I D + S K A V S + K L I +K
Sbjct: 62 LVDSK-GALILGFNRDERFAMCSTFKAPLAAAVLSGAEGNKFGLEGQIGFTKADLLDHAP 120
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA--T 150
L V+ +++ A + + + F +++ N+
Sbjct: 121 VVKKNARRGRMSMEELAAAAVEVSDNSAANLLLPMIGGPEGFTRYVRAHGDNVTRLDRTE 180
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+N + T+ MA L R+ + +++G N A
Sbjct: 181 PALNENAEGDERDTTSPAAMAGLMRRLIFTDLKPESAARLRGWLNASTTGGNRIKAGLPK 240
Query: 211 LGADGMKTG-FTCASGFNIVASAIQGDQSLIAVILGALD 248
G KTG A + A G++ ++A+ L
Sbjct: 241 DWTSGSKTGTCGTAYNDVALVKAPSGEEYILAIYLDRPT 279
>gi|259563902|gb|ACW83063.1| CTX-M-15 beta-lactamase [Klebsiella pneumoniae]
gi|259563905|gb|ACW83065.1| CTX-M-15 beta-lactamase [Klebsiella pneumoniae]
Length = 127
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 17/97 (17%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
D + S +K+M A V + + +L + I
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEI 100
>gi|212531167|ref|XP_002145740.1| D-aminoacylase, putative [Penicillium marneffei ATCC 18224]
gi|210071104|gb|EEA25193.1| D-aminoacylase, putative [Penicillium marneffei ATCC 18224]
Length = 414
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
PD AS TKLMTA ++ L
Sbjct: 57 PDTTMWIASCTKLMTAISAMQCVERGLLKLDE 88
>gi|305667706|ref|YP_003863993.1| beta-lactamase [Maribacter sp. HTCC2170]
gi|88709756|gb|EAR01989.1| beta-lactamase precursor [Maribacter sp. HTCC2170]
Length = 547
Score = 38.0 bits (86), Expect = 2.3, Method: Composition-based stats.
Identities = 19/150 (12%), Positives = 40/150 (26%), Gaps = 30/150 (20%)
Query: 1 MRQF-LVIIAMAMLSNIFPFLSIAE--------------TNKLPYYTLLDTNTGHVIAEN 45
M++ ++ + MA+ + P + ++ + G V+
Sbjct: 1 MKKTTILFLFMALAISSIPVFAQSQEQQYDALLKDTYTKDTPGISALVY--KNGKVLYRK 58
Query: 46 -------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
P++ + S+TK TA + +++ K L IT
Sbjct: 59 AFGMANLEYDIPMKPENVFEIGSITKQFTAVSILMLMEQGKLALEDEITKYIPDYPTKGK 118
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
T T + A
Sbjct: 119 KITVHHLLNHTSGIKSYTSMRSFIATAATD 148
>gi|56707801|ref|YP_169697.1| Beta-lactamase class A [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110670272|ref|YP_666829.1| Beta-lactamase class A [Francisella tularensis subsp. tularensis
FSC198]
gi|134302015|ref|YP_001121984.1| beta-lactamase [Francisella tularensis subsp. tularensis WY96-3418]
gi|254370299|ref|ZP_04986304.1| beta-lactamase class A [Francisella tularensis subsp. tularensis
FSC033]
gi|56604293|emb|CAG45314.1| Beta-lactamase class A [Francisella tularensis subsp. tularensis
SCHU S4]
gi|110320605|emb|CAL08697.1| Beta-lactamase class A [Francisella tularensis subsp. tularensis
FSC198]
gi|134049792|gb|ABO46863.1| beta-lactamase [Francisella tularensis subsp. tularensis WY96-3418]
gi|151568542|gb|EDN34196.1| beta-lactamase class A [Francisella tularensis subsp. tularensis
FSC033]
gi|282158975|gb|ADA78366.1| beta-lactamase [Francisella tularensis subsp. tularensis NE061598]
Length = 294
Score = 37.6 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 32/212 (15%), Positives = 52/212 (24%), Gaps = 3/212 (1%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
+ S K + + +L I ISKN + M
Sbjct: 55 FAVNASFYFPICSTYKFLVVGAILKQSMTDNKLLNQKIKISKNQIVEYSPITRRHINQIM 114
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T+ + + + I + + +N + +
Sbjct: 115 TVKQLCQASMQGDNTATNILIEKLGGLKNLNKFILSLADHATKVANLEPKVNHVSLTTNE 174
Query: 163 HYTTARDMAILSWRIKT--DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+ TT + MA ++ D H K I N A G KTG
Sbjct: 175 NKTTPKIMARDINKLAFSDDILDKKHRLMFKQWLIASNTSNNRIAAEVPDEWEVGDKTGT 234
Query: 221 TCASGFNIVASAIQGDQS-LIAVILGALDRNT 251
N VA D +I I +
Sbjct: 235 CQYGTTNDVAIIWPDDNRAVIMAIFYTQSQKN 266
>gi|300783228|ref|YP_003763519.1| beta-lactamase class C [Amycolatopsis mediterranei U32]
gi|299792742|gb|ADJ43117.1| beta-lactamase class C [Amycolatopsis mediterranei U32]
Length = 475
Score = 37.6 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
AS++K MTA+ V + + L P
Sbjct: 64 ASTRLPIASVSKSMTAFAVLQLAEAGRLGLDQP 96
>gi|167839554|ref|ZP_02466238.1| class A beta-lactamase precursor [Burkholderia thailandensis
MSMB43]
Length = 294
Score = 37.6 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 39/229 (17%), Positives = 73/229 (31%), Gaps = 7/229 (3%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
LDT TG I + D + S K+M + V + + A+L I +K
Sbjct: 53 VALDTATGARI-AHRADERFPFCSTFKMMLSAAVLARSADDAALLQRRIPYAKRDLVRYS 111
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSA 149
+ G+ MT+ + S N A + + + + + + + + L
Sbjct: 112 PITERHVGAGMTVAELCAATLQYSDNTAANLLIDLLGGPQAVTAYARSIGDATFRLDRRE 171
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T A + T A A + + D Q+ + K A
Sbjct: 172 TELNTAIPGDERDTTTPAAMAASVRRLLAGDALGAAQRAQLNAWMLGNKTGDARLRAGVP 231
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVI---LGALDRNTRNK 254
KTG N + A D+ ++ V+ + + + R+
Sbjct: 232 AGWRVADKTGTGDYGTGNDIGVAYPPDRAPIVFVVYTTMRSQNAPVRDD 280
>gi|254374409|ref|ZP_04989891.1| beta-lactamase class A [Francisella novicida GA99-3548]
gi|151572129|gb|EDN37783.1| beta-lactamase class A [Francisella novicida GA99-3548]
gi|332678298|gb|AEE87427.1| Beta-lactamase [Francisella cf. novicida Fx1]
Length = 294
Score = 37.6 bits (85), Expect = 2.3, Method: Composition-based stats.
Identities = 33/212 (15%), Positives = 53/212 (25%), Gaps = 3/212 (1%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
+ S K + + +L I ISKN + TM
Sbjct: 55 FAVNASFYFPICSTYKFLVVGAILKQSMTDNKLLNQKIKISKNQIVEYSPITRRHINQTM 114
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T+ + + + I + + +N + +
Sbjct: 115 TVKQLCQASMQGDNTATNILIEKLGGLKNLNKFILSLADHATKVANLEPKVNHVSLTTNE 174
Query: 163 HYTTARDMAILSWRIKT--DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+ TT + MA ++ D H K I N A G KTG
Sbjct: 175 NKTTPKIMARDINKLAFSDDILDKKHRLMFKQWLIASNTSNNRIAAEVPDEWEVGDKTGT 234
Query: 221 TCASGFNIVASAIQGDQS-LIAVILGALDRNT 251
N VA D +I I +
Sbjct: 235 CQYGTTNDVAIIWPDDNRAVIMAIFYTQSQKN 266
>gi|254424611|ref|ZP_05038329.1| hypothetical protein S7335_4771 [Synechococcus sp. PCC 7335]
gi|196192100|gb|EDX87064.1| hypothetical protein S7335_4771 [Synechococcus sp. PCC 7335]
Length = 504
Score = 37.6 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 19/139 (13%), Positives = 41/139 (29%), Gaps = 2/139 (1%)
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
+PASL KL A V + +K L + + I +T + L
Sbjct: 228 KGEQLLASPASLIKLPIAIAVLDKIHTEKLDLNSKLYIDPQNFTENAIGATIEVDKEYPL 287
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ +I +S N + + + + + + + + +
Sbjct: 288 VQVIDRMISESNNIATNQLIDYVGR--EGINKTLTARGYQDTFVDYKLAGNRILPPNPGT 345
Query: 165 TTARDMAILSWRIKTDFPQ 183
+ R R+ D +
Sbjct: 346 QSNRITTNDVTRMMVDTYR 364
>gi|223936735|ref|ZP_03628645.1| beta-lactamase [bacterium Ellin514]
gi|223894586|gb|EEF61037.1| beta-lactamase [bacterium Ellin514]
Length = 279
Score = 37.6 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 45/265 (16%), Positives = 72/265 (27%), Gaps = 26/265 (9%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+LD + + + + AS K+ V+ K LT I K
Sbjct: 27 VLDLTSNDR-FDINAEMVFPQASAIKIPVLMEVYKQAHAGKFSLTDTRRIEKQDKTSGSG 85
Query: 93 NSTF--KKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
MT+ + L+I+ S N + + + T +N T +LG T
Sbjct: 86 ILFELGDGTVQMTIHDLCILMILISDNTATNLLIDLVGITN------VNQTLNSLGFEQT 139
Query: 151 HFMNAHGVV------QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN 204
T A + IL K +F I + KK TN
Sbjct: 140 RLQRRMMDAAASLRGDENLSTPAEGVRILELLHKGEFINRSICDDILAI---LKKPKPTN 196
Query: 205 WAVGTFLG-ADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSAS----- 258
G G K G ++ + I VI+ +
Sbjct: 197 LTAGLPDGTVVATKPGNISGVATEWAIVYLKD-RPYIVVIMENYGVEHDAPDAMKAISQT 255
Query: 259 LLSMGFYNKTDRKKINYIIKDFYQQ 283
L F + K + Q+
Sbjct: 256 LHEY-FARLSRATKYGAYVAPSVQR 279
>gi|288904235|ref|YP_003429456.1| hypothetical protein GALLO_0012 [Streptococcus gallolyticus UCN34]
gi|306832495|ref|ZP_07465647.1| beta-lactamase [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325977212|ref|YP_004286928.1| beta-lactamase [Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|288730960|emb|CBI12504.1| conserved hypothetical exported protein [Streptococcus gallolyticus
UCN34]
gi|304425395|gb|EFM28515.1| beta-lactamase [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325177140|emb|CBZ47184.1| beta-lactamase [Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
Length = 428
Score = 37.6 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D AS+ KL T Y V L++
Sbjct: 222 NADTVMYSASVAKLATLYYVEEKLQDGTISANDT 255
>gi|50954234|ref|YP_061522.1| D-alanyl-D-alanine carboxypeptidase [Leifsonia xyli subsp. xyli
str. CTCB07]
gi|50950716|gb|AAT88417.1| D-alanyl-D-alanine carboxypeptidase [Leifsonia xyli subsp. xyli
str. CTCB07]
Length = 472
Score = 37.6 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTK 58
+++ TG V+ + P AS+ K
Sbjct: 98 VVNAKTGEVLFDRNGSKPAPTASVLK 123
>gi|256751507|ref|ZP_05492384.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter
ethanolicus CCSD1]
gi|256749591|gb|EEU62618.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter
ethanolicus CCSD1]
Length = 422
Score = 37.6 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 32/241 (13%), Positives = 73/241 (30%), Gaps = 25/241 (10%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D NTG E + AS K+ + +++ + + K + ++ E +
Sbjct: 198 IDLNTGQT-FEINGYDSFIAASTYKVPLNFYLYTLITDGKIDPNMKVQYTQADYEGGAGS 256
Query: 94 STFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
S T+ + I +S N + I +++ M +
Sbjct: 257 IQADPVGSYYTIRELSRRSIEESDNIASNMIMR--IVGRDNYIKFMEKLGAYV------- 307
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ + T+ RDM+ + + D+ + + N + G
Sbjct: 308 -----IPYSNNVTSPRDMS-MYMKNLLDYVNAHPDTAGELMYYLKNTIYNDRISYPIPDG 361
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-----GALDRNTRN--KVSASLLSMGFY 265
+ ++ N A + I +L G+ D + + ++ F
Sbjct: 362 IEVAHKIGNLSNVVNDAAIVFHPTRPYILTVLANNVDGSDDSYAYTVIRQISKMV-YDFQ 420
Query: 266 N 266
N
Sbjct: 421 N 421
>gi|262283168|ref|ZP_06060935.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
gi|262261420|gb|EEY80119.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
Length = 357
Score = 37.6 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + E K + I++ EY +
Sbjct: 124 DLTTGQT-FAVNDTQPMTAGSTYKLPLNMLVVDEVAEGKLSMEERFDITQTHFEYQGEHD 182
Query: 95 TFKKGST--MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ M++ + + +V S N A A+AE L +K + + + ++ G
Sbjct: 183 NYVAAFNGAMSIPDMQEYSLVYSENTPAYALAERLGGMDKAY-EMFSRYGQSKG 235
>gi|227505938|ref|ZP_03935987.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium striatum ATCC
6940]
gi|227197460|gb|EEI77508.1| D-alanyl-D-alanine carboxypeptidase [Corynebacterium striatum ATCC
6940]
Length = 424
Score = 37.6 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKL 59
++DT TG V+ + P PAS TK+
Sbjct: 84 VIDTTTGEVVWDRDAARPLTPASSTKV 110
>gi|311826257|emb|CBX55910.1| putative CTX-M-15 extended spectrum beta-lactamase [Escherichia
coli]
Length = 102
Score = 37.6 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
D + S +K+M A V + + +L I
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRAEI 100
>gi|224370590|ref|YP_002604754.1| MrdA [Desulfobacterium autotrophicum HRM2]
gi|223693307|gb|ACN16590.1| MrdA [Desulfobacterium autotrophicum HRM2]
Length = 617
Score = 37.6 bits (85), Expect = 2.4, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 23/103 (22%), Gaps = 36/103 (34%)
Query: 27 KLPYYTLLDTNTGHVI-------AENY-----------------PDHPW---------NP 53
K +D + G ++ + PD P P
Sbjct: 257 KAGAVVAMDPSNGDILVMASSPSFDQNDFIGGISSKKWKKLLADPDRPMSNKCIQGEYPP 316
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF 96
AS K++TA L T S +
Sbjct: 317 ASTYKILTAIAGLEE---GVVDLNTRHYCSGQYKFGNRIYRCW 356
>gi|40645554|dbj|BAD06399.1| beta-lactamase GES-3 [Klebsiella pneumoniae]
Length = 287
Score = 37.6 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 29/219 (13%), Positives = 54/219 (24%), Gaps = 14/219 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP-P 91
++D G ++A + + S K A +VF + ++ + P
Sbjct: 43 IVDPQ-GEIVAGHRTAQRFAMCSTFKFPLAALVFERIDSGTERGDRKLSYGPDMIVKWSP 101
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG--LSA 149
+ F MT+ A + + S N + + M + +G +S
Sbjct: 102 ATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREI-----GGPAAMTQYFRKIGDSVSR 156
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN----- 204
I R I+ N
Sbjct: 157 LDRKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATL 216
Query: 205 WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVI 243
A G KTG G N + ++ +
Sbjct: 217 RAGFPKDWVVGEKTGTCANGGRNDIGFFKAQERDYAVAV 255
>gi|312891487|ref|ZP_07751003.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Mucilaginibacter
paludis DSM 18603]
gi|311296025|gb|EFQ73178.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Mucilaginibacter
paludis DSM 18603]
Length = 443
Score = 37.6 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
L D ++ E D + PAS TKL T Y
Sbjct: 52 LYDPEKKKMVYELNADKYFIPASNTKLYTFYACLQM 87
>gi|157151312|ref|YP_001450876.1| hypothetical protein SGO_1598 [Streptococcus gordonii str. Challis
substr. CH1]
gi|157076106|gb|ABV10789.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
substr. CH1]
Length = 357
Score = 37.6 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 5/138 (3%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLK 70
+ + +L+ A + D TG P S KL +V +
Sbjct: 100 LTQVVQAYLAEAGIEQSQIAFSYKDLTTGQT-FAMNDTQPMTAGSTYKLPLNMLVVDEVA 158
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGST--MTLDNALKLLIVKSANDIAVAIAESLC 128
E K + I++ EY + + M++ + + +V S N A A+AE L
Sbjct: 159 EGKLSMEERFDITQTHFEYQGEHDNYVAAFNGAMSIPDMQEYSLVYSENTPAYALAERLG 218
Query: 129 KTEKKFVQHMNNTSKNLG 146
+K + + + ++ G
Sbjct: 219 GMDKAY-EMFSRYGQSKG 235
>gi|295822193|gb|ADG36750.1| extended-spectrum class A beta-lactamase [Rahnella sp. 344-Salad]
Length = 218
Score = 37.6 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 26/203 (12%), Positives = 58/203 (28%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + + +L ++++++ + + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKQSETQTELLNRRVSLTRSDLVNYNPITEKHLDTGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + S N + E L +K ++ + + + + L + A
Sbjct: 65 VGELAAAALQYSDNTAMNKLIEQLGGPQKVTEYARTLGDKTFRLDRTEPTLNTAIPGDDR 124
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+ L Q+ + A G KTG
Sbjct: 125 DTTSPRAMALSLQHVTLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWVVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ LI +
Sbjct: 185 DYGTTNDIAVIWPDNKAPLILIT 207
>gi|296327729|ref|ZP_06870269.1| beta-lactamase [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|296155167|gb|EFG95944.1| beta-lactamase [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 268
Score = 37.6 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 13/208 (6%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGST 101
AS+ KL+ + + E L+ ITI+ G
Sbjct: 39 FSINGSEKVLSASMIKLLILAELMKKVSENNFSLSDTITITNFMKTEGDGVLKELNAGHH 98
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ- 160
TL L+I+ S N + + L ++++N K LGL T +
Sbjct: 99 FTLKELATLMIIVSDNQATNILIDFL------GMENINFLGKELGLRETFLERRMMDAEA 152
Query: 161 ----HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGM 216
+ +YT+A D+++L + L+I ++
Sbjct: 153 SKNGYDNYTSADDLSLLLK-LIYQEKLINKETSQLMLDILLRQQQGERLQRYLPPDIKIA 211
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVIL 244
+ N G++ I V+L
Sbjct: 212 HKCGDLDNLENDGGIIWLGNKIYILVVL 239
>gi|253997375|ref|YP_003049439.1| peptidoglycan glycosyltransferase [Methylotenera mobilis JLW8]
gi|253984054|gb|ACT48912.1| Peptidoglycan glycosyltransferase [Methylotenera mobilis JLW8]
Length = 574
Score = 37.6 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 24/128 (18%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP---------------WNPASL 56
+LD TG V+A P++P + P S
Sbjct: 236 LTKAVEKFKANAGAAVVLDAKTGEVLAMVNVPTYNPNNPINIQGKTRNRAITDIFEPGST 295
Query: 57 TKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN-STFKKGSTMTLDNALKLLIVKS 115
K +T K T I + P+ M++ ++
Sbjct: 296 MKTVTVAAALE---TGKYTPDTMIQTAPGYMSIGPATIHDAHPHGLMSVSEVIQKSSNVG 352
Query: 116 ANDIAVAI 123
+ +A+++
Sbjct: 353 SAKMALSL 360
>gi|94987378|ref|YP_595311.1| Zn-dependent peptidase [Lawsonia intracellularis PHE/MN1-00]
gi|94731627|emb|CAJ54990.1| predicted Zn-dependent peptidases [Lawsonia intracellularis
PHE/MN1-00]
Length = 909
Score = 37.6 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 37/328 (11%), Positives = 94/328 (28%), Gaps = 22/328 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL- 59
M++ L I L +F + + + + T ++ E +T+L
Sbjct: 18 MKKRLFFIFSIFLLGVFMATYMVQPLEATSSII---KTNDILPE-NLTKKHPI--VTRLC 71
Query: 60 --MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
+T V+ + T S S + + +
Sbjct: 72 NGLTVLVLEDNRFPLVSTRLYVHTGSAYEKPEQSGISHILEHMVFKGTESRPNATISQEV 131
Query: 118 DIAVAIAESLCKTEKKFVQ-HMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
+ + + + M ++ LG+ M H ++ + + + +
Sbjct: 132 EAVGGYLNAATSYDYTVYKTDMPSSQWKLGMDVVRDMAFHPMLDPQDLESEKKVILAELA 191
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
D P + ++ + G Y + + T +
Sbjct: 192 RGEDNPHSFAFKKLLAKSLAGTPYS---RPIIGYPETINAVTSQDLKDYI----ATHYQP 244
Query: 237 QSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEV 296
Q ++ V++G + N + + L F + + I + + ++ E +
Sbjct: 245 QDMLLVVVGDVKANEVLQEANHL----FSKYNNTQNIILPLPYYAEELPLKEGQGTVTII 300
Query: 297 CTTQKE-IINYNTQMKEAKDKESHFIDF 323
T + + + A + ES+ +D
Sbjct: 301 PGTWNKIYLTAAVPVSNALNIESNTLDV 328
>gi|332557768|ref|ZP_08412090.1| peptidoglycan glycosyltransferase [Rhodobacter sphaeroides WS8N]
gi|38174788|emb|CAE53835.1| Pbp2 protein [Rhodobacter sphaeroides]
gi|332275480|gb|EGJ20795.1| peptidoglycan glycosyltransferase [Rhodobacter sphaeroides WS8N]
Length = 648
Score = 37.6 bits (85), Expect = 2.5, Method: Composition-based stats.
Identities = 14/147 (9%), Positives = 27/147 (18%), Gaps = 37/147 (25%)
Query: 26 NKLPYYTLLDTNTGHVIA------------------------ENYPDHPW---------N 52
+ +D TG ++A P
Sbjct: 265 TESAAAVAIDVITGDILAICSSPSFDPNLFVRGISFKDYAALTENDHRPLANKAVQGAYP 324
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
P S K++TA T + E K + + + L
Sbjct: 325 PGSTFKMVTALAALEA---GVITPETSVYC-PGHYETGGRRFHCWKRGGHGMVSLSRSLS 380
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMN 139
+ + +
Sbjct: 381 ESCDVYYYDIAQRVGIDKIAEMGRRLG 407
>gi|300782252|ref|YP_003762543.1| alanine rich lipoprotein LppW [Amycolatopsis mediterranei U32]
gi|299791766|gb|ADJ42141.1| putative alanine rich lipoprotein LppW [Amycolatopsis mediterranei
U32]
Length = 298
Score = 37.6 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS-----FLKEKKAMLTTPITISK 84
+ D G V+ D + ASL KL+ A ++ + S+
Sbjct: 97 SAVVFDRERGAVVTSVRADRAYTSASLVKLLIALSALEQGGPVADVQRMLSRSDDDLASR 156
Query: 85 NASEYPPSNSTFKKGS 100
+ Y + +
Sbjct: 157 FWTAYGGPSIVTHWTT 172
>gi|71909116|ref|YP_286703.1| peptidoglycan synthetase FtsI [Dechloromonas aromatica RCB]
gi|71848737|gb|AAZ48233.1| peptidoglycan synthetase FtsI [Dechloromonas aromatica RCB]
Length = 582
Score = 37.6 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 21/80 (26%)
Query: 12 MLSNIFPFLSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP---------------- 50
+ + K ++D TG V+A P++
Sbjct: 242 LAYSQLKNAVETNNAKAGGAIVIDARTGEVLALANWPTYNPNNRERLSGAQLRNRAITDT 301
Query: 51 WNPASLTKLMTAYVVFSFLK 70
+ P S+ K TA + K
Sbjct: 302 FEPGSVMKPFTAALALEKGK 321
>gi|113475897|ref|YP_721958.1| hypothetical protein Tery_2257 [Trichodesmium erythraeum IMS101]
gi|110166945|gb|ABG51485.1| hypothetical protein Tery_2257 [Trichodesmium erythraeum IMS101]
Length = 434
Score = 37.6 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 35/233 (15%), Positives = 69/233 (29%), Gaps = 22/233 (9%)
Query: 46 YPDHP-WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
+ P + ASL K+ A + + ++ L TP+ +S+ S + L
Sbjct: 208 NGNKPPASAASLIKVPIAVALMQKVSKENISLDTPVYVSRGNFTEDGSK--IRARKRYPL 265
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ +I S+N + + L + +N K+ G +
Sbjct: 266 KTLVGEMIDHSSNIATNQLIDYLGQPY------INKVLKDDGYKIIRVNYKLMGNRIRPK 319
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG--------ADGM 216
R L+ TD ++ + ++ + N + + G G
Sbjct: 320 NPGRGRNRLTSNELTDMMVSIYNNEYPNSDVLIEALANQKDRLLGYAGLEKLPEAKWLGE 379
Query: 217 KTGFTCASGFNIVASAIQGDQSLIAVIL---GALDRNTRNKVSASLLSMGFYN 266
KTG + + Q + ++ G D R L N
Sbjct: 380 KTGENSRALGTTLG-FSINGQVYVMTVIDNRGGRDPQIRAS-VNKLAKYLIDN 430
>gi|116750145|ref|YP_846832.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Syntrophobacter fumaroxidans MPOB]
gi|116699209|gb|ABK18397.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Syntrophobacter fumaroxidans MPOB]
Length = 430
Score = 37.6 bits (85), Expect = 2.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
VI E + P PASL K++T+Y +LK +
Sbjct: 8 KVIWEFRSEEPLVPASLVKVLTSYAALKYLKPQY 41
>gi|269836702|ref|YP_003318930.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
gi|269785965|gb|ACZ38108.1| beta-lactamase [Sphaerobacter thermophilus DSM 20745]
Length = 304
Score = 37.6 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 35 DTNTG-HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAML 76
D +TG V+ PD AS K + Y ++ + +
Sbjct: 29 DLDTGTEVMY--NPDVVVPTASTMKTVLLYELYRQVDAGQIDP 69
>gi|254372958|ref|ZP_04988447.1| hypothetical protein FTCG_00530 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570685|gb|EDN36339.1| hypothetical protein FTCG_00530 [Francisella novicida GA99-3549]
Length = 294
Score = 37.6 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 33/212 (15%), Positives = 53/212 (25%), Gaps = 3/212 (1%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
+ S K + + +L I ISKN + TM
Sbjct: 55 FAVNASFYFPICSTYKFLVVGAILKQSMTDNKLLNQKIKISKNQIVEYSPITRRHINQTM 114
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T+ + + + I + + +N + +
Sbjct: 115 TVKQLCQASMQGDNTATNILIEKLGGLKNLNKFVLSLADHATKVANLEPKVNHVSLTTNE 174
Query: 163 HYTTARDMAILSWRIKT--DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+ TT + MA ++ D H K I N A G KTG
Sbjct: 175 NKTTPKIMARDINKLAFSDDILDKKHRLMFKQWLIASNTSNNRIAAEVPDEWEVGDKTGT 234
Query: 221 TCASGFNIVASAIQGDQS-LIAVILGALDRNT 251
N VA D +I I +
Sbjct: 235 CQYGTTNDVAIIWPDDNRAVIMAIFYTQSQKN 266
>gi|256862188|gb|ACV32629.1| beta-lactamase Tem171 [Escherichia coli]
Length = 222
Score = 37.6 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 60/211 (28%), Gaps = 3/211 (1%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
P+ + S K++ V S + + L I S+N + MT+
Sbjct: 5 PEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRE 64
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
I S N A + ++ ++ F+ +M + L A +
Sbjct: 65 LCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTT 124
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCAS 224
A L + + Q+ K + K+G
Sbjct: 125 MPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERG 184
Query: 225 GFNIVASAIQGDQS-LIAVILGALDRNTRNK 254
I+A+ + I VI + T ++
Sbjct: 185 SRGIIAALGPDGKPSRIVVIYTTGSQATMDE 215
>gi|149912388|ref|ZP_01900937.1| beta-lactamase [Moritella sp. PE36]
gi|149804534|gb|EDM64617.1| beta-lactamase [Moritella sp. PE36]
Length = 75
Score = 37.6 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 11/68 (16%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETN----KLP-------YYTLLDTNTGHVIAENYPDHPWN 52
F V + + P + ET Y LD N+G ++ P+ +
Sbjct: 6 FRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFP 65
Query: 53 PASLTKLM 60
S K++
Sbjct: 66 MMSTFKVL 73
>gi|148264898|ref|YP_001231604.1| peptidoglycan glycosyltransferase [Geobacter uraniireducens Rf4]
gi|146398398|gb|ABQ27031.1| peptidoglycan glycosyltransferase [Geobacter uraniireducens Rf4]
Length = 636
Score = 37.6 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 33/94 (35%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVI-AENYP------------------- 47
+ + + S++ A +K ++D N+G ++ + P
Sbjct: 242 LVLTIDSDLQKQTEQAFGDKAGAAVVMDVNSGEILAFSSNPGFDPSLFTGRMSPEQWKSY 301
Query: 48 --DHP-----------WNPASLTKLMTAYVVFSF 68
D + P S K++TA
Sbjct: 302 LEDKRHPLENKALKGQYPPGSTFKVITALAGLEE 335
>gi|311334861|emb|CBX55128.1| CTX-M-15 extended spectrum beta-lactamase [Escherichia coli]
gi|311334864|emb|CBX55130.1| CTX-M-15 extended spectrum beta-lactamase [Escherichia coli]
gi|311334867|emb|CBX55132.1| CTX-M-15 extended spectrum beta-lactamase [Escherichia coli]
gi|311334870|emb|CBX55134.1| CTX-M-15 extended spectrum beta-lactamase [Escherichia coli]
gi|311334873|emb|CBX55136.1| CTX-M-15 extended spectrum beta-lactamase [Escherichia coli]
gi|311334879|emb|CBX55160.1| CTX-M-15 extended spectrum beta-lactamase [Escherichia coli]
gi|311334882|emb|CBX55162.1| CTX-M-15 extended spectrum beta-lactamase [Escherichia coli]
gi|311334885|emb|CBX55164.1| CTX-M-15 extended spectrum beta-lactamase [Escherichia coli]
gi|311826248|emb|CBX55904.1| CTX-M-15 extended spectrum beta-lactamase [Escherichia coli]
gi|311826251|emb|CBX55906.1| CTX-M-15 extended spectrum beta-lactamase [Escherichia coli]
gi|311826254|emb|CBX55908.1| CTX-M-15 extended spectrum beta-lactamase [Escherichia coli]
Length = 98
Score = 37.6 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 17/94 (18%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + S +K+M A V + + +L
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQR 97
>gi|2804173|dbj|BAA24410.1| acetyl-coenzyme A carboxylase like carboxylase [Saccharomyces
cerevisiae]
Length = 2273
Score = 37.6 bits (85), Expect = 2.7, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 1/167 (0%)
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTA 167
K + + + + L L F N G
Sbjct: 3 KTITHGQSWGARRIHSHFYITIFTITCIRIGQYKLALYLDPYRFYNITGSQIVRLKGQRP 62
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ + F + N + G+ T +
Sbjct: 63 EYRKRIFAHSYRHSSRIGLNFPSRRRYSNYVDRGNIHKHTRLPPQFIGLNTVESAQPSIL 122
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
++G ++I+ IL A + K S+ + D K I
Sbjct: 123 RDFVDLRGGHTVISKILIANNGIAAVKEMRSIRKWAYETFNDEKIIQ 169
>gi|290463424|sp|A6ZMR9|HFA1_YEAS7 RecName: Full=Acetyl-CoA carboxylase, mitochondrial; Short=ACC;
Includes: RecName: Full=Biotin carboxylase; Flags:
Precursor
Length = 2273
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 1/167 (0%)
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTA 167
K + + + + L L F N G
Sbjct: 3 KTITHGQSWGARRIHSHFYITIFTITCIRIGQYKLALYLDPYRFYNITGSQIVRLKGQRP 62
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ + F + N + G+ T +
Sbjct: 63 EYRKRIFAHSYRHSSRIGLNFPSRRRYSNYVDRGNIHKHTRLPPQFIGLNTVESAQPSIL 122
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
++G ++I+ IL A + K S+ + D K I
Sbjct: 123 RDFVDLRGGHTVISKILIANNGIAAVKEMRSIRKWAYETFNDEKIIQ 169
>gi|306836497|ref|ZP_07469468.1| cell division protein FtsI/penicillin-binding protein
[Corynebacterium accolens ATCC 49726]
gi|304567587|gb|EFM43181.1| cell division protein FtsI/penicillin-binding protein
[Corynebacterium accolens ATCC 49726]
Length = 404
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 23/93 (24%), Gaps = 27/93 (29%)
Query: 31 YTLLDTNTGHVIAENYPDH------------------------PWNPASLTKLMTAYVVF 66
+LD TG V+A D P+ P S+ K++TA
Sbjct: 280 AVVLDAATGQVLAMANTDTVDPNKNIEDQLKEGKDFENRSISHPYEPGSVAKIVTAAAAL 339
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99
+ + + +
Sbjct: 340 QE---GITTPDEVHQVPGSIDMAGVTVNDAWPH 369
>gi|290463423|sp|C7GRE4|HFA1_YEAS2 RecName: Full=Acetyl-CoA carboxylase, mitochondrial; Short=ACC;
Includes: RecName: Full=Biotin carboxylase; Flags:
Precursor
Length = 2273
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 1/167 (0%)
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTA 167
K + + + + L L F N G
Sbjct: 3 KTITHGQSWGARRIHSHFYITIFTITCIRIGQYKLALYLDPYRFYNITGSQIVRLKGQRP 62
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ + F + N + G+ T +
Sbjct: 63 EYRKRIFAHSYRHSSRIGLNFPSRRRYSNYVDRGNIHKHTRLPPQFIGLNTVESAQPSIL 122
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
++G ++I+ IL A + K S+ + D K I
Sbjct: 123 RDFVDLRGGHTVISKILIANNGIAAVKEMRSIRKWAYETFNDEKIIQ 169
>gi|290463422|sp|B3LM95|HFA1_YEAS1 RecName: Full=Acetyl-CoA carboxylase, mitochondrial; Short=ACC;
Includes: RecName: Full=Biotin carboxylase; Flags:
Precursor
Length = 2273
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 1/167 (0%)
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTA 167
K + + + + L L F N G
Sbjct: 3 KTITHGQSWGARRIHSHFYITIFTITCIRIGQYKLALYLDPYRFYNITGSQIVRLKGQRP 62
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ + F + N + G+ T +
Sbjct: 63 EYRKRIFAHSYRHSSRIGLNFPSRRRYSNYVDRGNIHKHTRLPPQFIGLNTVESAQPSIL 122
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
++G ++I+ IL A + K S+ + D K I
Sbjct: 123 RDFVDLRGGHTVISKILIANNGIAAVKEMRSIRKWAYETFNDEKIIQ 169
>gi|320450595|ref|YP_004202691.1| penicillin-binding protein 2 [Thermus scotoductus SA-01]
gi|320150764|gb|ADW22142.1| penicillin-binding protein 2 [Thermus scotoductus SA-01]
Length = 581
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 15/157 (9%), Positives = 36/157 (22%), Gaps = 41/157 (26%)
Query: 23 AETNKLPYYTL-LDTNTGHVI------------AENY--------------------PDH 49
++ + ++ TG V+
Sbjct: 243 PPATRVKGAIVAVNPKTGEVLAMASAPSFDPSLFAKRPVPQEVQALLKDKDLPLLNRAVQ 302
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
P+ P S KL T+Y + +T S + +
Sbjct: 303 PYTPGSTFKLATSYTLLEE---GYVSPSTTFRCSPYIVFGGQVRRNWAARDMGPMTVKEA 359
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
+ + +++ + V + ++ LG
Sbjct: 360 IAWSCNTWYY-----QAVAQDPLGVVDRLAARARLLG 391
>gi|296282018|ref|ZP_06860016.1| Beta-lactamase class A [Citromicrobium bathyomarinum JL354]
Length = 356
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 29/214 (13%), Positives = 59/214 (27%), Gaps = 13/214 (6%)
Query: 34 LDTNTGH---VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+D TG V+ D + AS +K+ A + + + + L++ + +
Sbjct: 89 VDLTTGAEVGVL----ADQRFPMASTSKVAIAATFLAGVDQGRWSLSSEFELPGRGTYIS 144
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ D LL A S + + +++ + G +
Sbjct: 145 AREHLNLMITRSCNDCTDALLNAVGGPQAVNAWMRSAGILDFQLTRNIAALVREDGRTDP 204
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ T R M L I Q+ +
Sbjct: 205 AT-----EIDLRDSATPRAMGQLLAGIYQGRWLSPSSRQVLMNAMGDTVTGKRRMTSALP 259
Query: 211 LGAD-GMKTGFTCASGFNIVASAIQGDQSLIAVI 243
+ A+ KTG + +I + + A I
Sbjct: 260 MSANLAHKTGTLSRTASDIGIFYTPDGRPIAAAI 293
>gi|290463425|sp|C8ZF72|HFA1_YEAS8 RecName: Full=Acetyl-CoA carboxylase, mitochondrial; Short=ACC;
Includes: RecName: Full=Biotin carboxylase; Flags:
Precursor
Length = 2273
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 1/167 (0%)
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTA 167
K + + + + L L F N G
Sbjct: 3 KTITHGQSWGARRIHSHFYITIFTITCIRIGQYKLALYLDPYRFYNITGSQIVRLKGQRP 62
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ + F + N + G+ T +
Sbjct: 63 EYRKRIFAHSYRHSSRIGLNFPSRRRYSNYVDRGNIHKHTRLPPQFIGLNTVESAQPSIL 122
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
++G ++I+ IL A + K S+ + D K I
Sbjct: 123 RDFVDLRGGHTVISKILIANNGIAAVKEMRSIRKWAYETFNDEKIIQ 169
>gi|1708192|sp|P32874|HFA1_YEAST RecName: Full=Acetyl-CoA carboxylase, mitochondrial; Short=ACC;
Includes: RecName: Full=Biotin carboxylase; Flags:
Precursor
Length = 2273
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 20/167 (11%), Positives = 38/167 (22%), Gaps = 1/167 (0%)
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG-HYTTA 167
K + + + + L L F N G
Sbjct: 3 KTITHGQSWGARRIHSHFYITIFTITCIRIGQYKLALYLDPYRFYNITGSQIVRLKGQRP 62
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFN 227
+ + F + N + G+ T +
Sbjct: 63 EYRKRIFAHSYRHSSRIGLNFPSRRRYSNYVDRGNIHKHTRLPPQFIGLNTVESAQPSIL 122
Query: 228 IVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYNKTDRKKIN 274
++G ++I+ IL A + K S+ + D K I
Sbjct: 123 RDFVDLRGGHTVISKILIANNGIAAVKEMRSIRKWAYETFNDEKIIQ 169
>gi|21909545|ref|NP_663813.1| hypothetical protein SpyM3_0009 [Streptococcus pyogenes MGAS315]
gi|21903725|gb|AAM78616.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
Length = 428
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 25/204 (12%), Positives = 54/204 (26%), Gaps = 13/204 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--------FK 97
D AS++KL Y+V L++KK +T K+ + +
Sbjct: 222 NADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYIKDVNHFYGDYDPLGSGKISKIP 281
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+++ LK + +S N + LC K + +
Sbjct: 282 DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAFRSEIKALSGIDWDM-----EQR 336
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++ + + + Q + + + + +
Sbjct: 337 LLTSRSAANMMEAIYHQKGQIISYLSNTEFDQQRITKNITVPVAHKIGDAYDYKHDVAII 396
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
G T + D + IA
Sbjct: 397 YGNTPFILSIFTNKSTYEDITAIA 420
>gi|28894922|ref|NP_801272.1| hypothetical protein SPs0010 [Streptococcus pyogenes SSI-1]
gi|28810167|dbj|BAC63105.1| hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 428
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 25/204 (12%), Positives = 54/204 (26%), Gaps = 13/204 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST--------FK 97
D AS++KL Y+V L++KK +T K+ + +
Sbjct: 222 NADKKMYAASISKLAPLYIVQKQLQKKKLAENKTLTYIKDVNHFYGDYDPLGSGKISKIP 281
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+++ LK + +S N + LC K + +
Sbjct: 282 DNKDYRVEDLLKAVAQQSDNVATNILGYYLCHQYDKAFRSEIKALSGIDWDM-----EQR 336
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++ + + + Q + + + + +
Sbjct: 337 LLTSRSAANMMEAIYHQKGQIISYLSNTEFDQQRITKNITVPVAHKIGDAYDYKHDVAII 396
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
G T + D + IA
Sbjct: 397 YGNTPFILSIFTNKSTYEDITAIA 420
>gi|114330251|ref|YP_746473.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Nitrosomonas eutropha C91]
gi|114307265|gb|ABI58508.1| D-Ala-D-Ala carboxypeptidase PBP3, Serine peptidase, MEROPS
family S13 [Nitrosomonas eutropha C91]
Length = 475
Score = 37.6 bits (85), Expect = 2.8, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYT-------------LLDTNTGHVIAENYP 47
M+ L I + + FP ++ + + + + +
Sbjct: 1 MKSLLKITWLLWGALTFPAYAVDLPDTVRQALKKTGIPEAAVGIYVREVGAERPLVSVNA 60
Query: 48 DHPWNPASLTKLMTAYVVFSF 68
D P NPAS+ K++T Y
Sbjct: 61 DVPMNPASVMKVVTTYAGLEM 81
>gi|330963530|gb|EGH63790.1| esterase [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 392
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
D + ASLTKL+T+ V + L
Sbjct: 58 DTRFRLASLTKLLTSVTVLRLCEVGVLSLD 87
>gi|330877661|gb|EGH11810.1| esterase [Pseudomonas syringae pv. morsprunorum str. M302280PT]
Length = 392
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
D + ASLTKL+T+ V + L
Sbjct: 58 DTRFRLASLTKLLTSVTVLRLCEVGVLSLD 87
>gi|328676710|gb|AEB27580.1| D-alanyl-D-alanine carboxypeptidase [Francisella cf. novicida
Fx1]
Length = 464
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 27 KLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
++++ VI D + PAS TKL+T
Sbjct: 45 SAQIAVKIINSEKNTVILSKNADKNFIPASNTKLLTGI 82
>gi|291303038|ref|YP_003514316.1| beta-lactamase [Stackebrandtia nassauensis DSM 44728]
gi|290572258|gb|ADD45223.1| beta-lactamase [Stackebrandtia nassauensis DSM 44728]
Length = 480
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 31/112 (27%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
+ P ASL+K TA V ++ K L P+ + + +
Sbjct: 76 GEAPMPIASLSKSFTALAVMRLSEQGKVDLDAPVREYLSEFTMDDPRAKRITVRQLLNQT 135
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
+ S A + + + K+ +F A +
Sbjct: 136 SGMSDGTFSEKVEAQPSDLAGSVSRLADAELATAPGKSWNYHNPNFHVAARL 187
>gi|229096279|ref|ZP_04227252.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
gi|228687239|gb|EEL41144.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-29]
Length = 115
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + AS K++ A + E K
Sbjct: 29 NGEVLTSINANKKLPLASTAKIVIAVEFAKQVSEGKISRDE 69
>gi|219920961|emb|CAQ76658.1| beta-lactamase [Klebsiella oxytoca]
gi|219920979|emb|CAQ76667.1| beta-lactamase [Klebsiella oxytoca]
Length = 275
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 234 VGDKTGGGDYGTTNDIAVIWPENHAPLVLVT 264
>gi|330446050|ref|ZP_08309702.1| beta-lactamase CARB-6 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328490241|dbj|GAA04199.1| beta-lactamase CARB-6 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 294
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 37/271 (13%), Positives = 76/271 (28%), Gaps = 8/271 (2%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYT-LLDTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+++A + + +L+ N G + + + S K +
Sbjct: 24 FSAMSVASTNIDSAIKHAEQQLGAKVGVSVLNAN-GDSLYGYNSEQRFPLMSTFKTLACA 82
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + K M+ ++ A K G+ ++L +A + S N A +
Sbjct: 83 KLLHDNQITKGMMDKTYPVTAEAILDYAPIFKDKVGTEVSLKDACFATMTTSDNSAANFV 142
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-QHGHYTTARDMAILSWRIKTDFP 182
+ E ++N L + TT M ++
Sbjct: 143 LAHIGGAEGVTKFLIDNGDNVTRLDRIEPLLNEATPGDKRDTTTPYAMNETITKLVLGDA 202
Query: 183 QYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD-GMKTGFTCASGFNIVASAIQGDQS--L 239
+K K N + G + ++G I A + +
Sbjct: 203 LNPASKAQLTEWMKANKVSNGLFRSVLPQGWEIADRSGAGGYGSRGITAVVWNEQKQPLV 262
Query: 240 IAVILGAL--DRNTRNKVSASLLSMGFYNKT 268
I+V L R+K A + + F T
Sbjct: 263 ISVYLTGTEASIPERDKEIAKIGNAIFERYT 293
>gi|326801908|ref|YP_004319727.1| beta-lactamase [Sphingobacterium sp. 21]
gi|326552672|gb|ADZ81057.1| beta-lactamase [Sphingobacterium sp. 21]
Length = 812
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 23/224 (10%), Positives = 61/224 (27%), Gaps = 16/224 (7%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
L D +T ++ AS K F ++ K L+ + +
Sbjct: 562 LSDNDT----FFYNEHQLFHAASTMKTPVLAETFRQIERGKLALSDSVEVYNEFKSIYDG 617
Query: 93 NSTFKKGSTMTLDNAL------------KLLIVKSANDIAVAIAESLCKTEKKFVQHMNN 140
+S + L ++ ++++A I L +
Sbjct: 618 SSYAIDARDDSEQGLYSLIGKKATLADLLLRMITQSSNLATNIVIDLVGAKNVMKTMERL 677
Query: 141 TSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKY 200
+K + + + + +A D+++L ++ + + + +
Sbjct: 678 GAKEMKILRGVEDSKAFAHGMNNMVSAYDLSLLFVQLARGEMINSRSSEQMLDILMKQHF 737
Query: 201 PNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
A KTG + + + + ++L
Sbjct: 738 RGIIPAELPADVKVANKTGSINKVCHDSGIVFLPDGRKYVLILL 781
>gi|312132103|ref|YP_003999443.1| beta-lactamase [Leadbetterella byssophila DSM 17132]
gi|311908649|gb|ADQ19090.1| beta-lactamase [Leadbetterella byssophila DSM 17132]
Length = 490
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 26/253 (10%), Positives = 58/253 (22%), Gaps = 46/253 (18%)
Query: 1 MRQFLVIIAMAMLSNIFPF----LSIAETNKLP--------------YYTLLDTNTGHVI 42
M++ L + +A+ + ++ Y + + G V+
Sbjct: 1 MKRILFFVLLAISARAQSVEERIKALGPELNARLDAFKKKQNLASVSYAIVYN---GKVV 57
Query: 43 A-------ENYPDHP------WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
E P + AS++K V + L P + + E
Sbjct: 58 HQNFDGFIEKESKRPATAQSVYRIASMSKSFAGVAVLQLRDAGRLKLEDP--VYQYIPEL 115
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+ + N + + M K +
Sbjct: 116 SGQSYSSDSPDITIRHLLTHAAGFPEDNP-------WGDRQLGISTEEMLAMFKKGISFS 168
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYF--QIKGLEIKGKKYPNTNWAV 207
T + ++ +S + ++ Q + +K K P
Sbjct: 169 TEPGQTYEYSNMAFAMLGYIISQVSGQTYQEYIQEHIWNPLGMKDTYWDYTKVPKDQLVH 228
Query: 208 GTFLGADGMKTGF 220
G + G
Sbjct: 229 G-YRYFQGDFVAQ 240
>gi|121533942|ref|ZP_01665768.1| hypothetical protein TcarDRAFT_2319 [Thermosinus carboxydivorans
Nor1]
gi|121307453|gb|EAX48369.1| hypothetical protein TcarDRAFT_2319 [Thermosinus carboxydivorans
Nor1]
Length = 257
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 15/82 (18%)
Query: 1 MRQFLVIIAMAMLSNIF------PFLSIAETNKLPY--------YTLLDTNTGHVIAENY 46
M+++L+ I + + + A+ + TG
Sbjct: 1 MKKWLIAIVLGITIVLANATVFGAPRPTAKEVTAYANTFEGSIGIYAKNLKTGKT-YAYR 59
Query: 47 PDHPWNPASLTKLMTAYVVFSF 68
D + AS +KL+ A + +
Sbjct: 60 SDVVFPTASTSKLVVALAAYKY 81
>gi|329116770|ref|ZP_08245487.1| hypothetical protein SPB_2043 [Streptococcus parauberis NCFD 2020]
gi|326907175|gb|EGE54089.1| hypothetical protein SPB_2043 [Streptococcus parauberis NCFD 2020]
Length = 428
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
D AS+ KL T Y V + + L + + +
Sbjct: 222 NADKQMYAASIAKLGTLYFVQERVNNGQLRLDSKFKYVDQVNHFNGDY 269
>gi|302344706|ref|YP_003809235.1| penicillin-binding protein transpeptidase [Desulfarculus baarsii
DSM 2075]
gi|301641319|gb|ADK86641.1| penicillin-binding protein transpeptidase [Desulfarculus baarsii
DSM 2075]
Length = 416
Score = 37.6 bits (85), Expect = 2.9, Method: Composition-based stats.
Identities = 32/268 (11%), Positives = 56/268 (20%), Gaps = 40/268 (14%)
Query: 30 YYTLLDTNTGHVIA-----------ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
++D +TG V+ D ASL KL+TA +
Sbjct: 103 AVAMVDAHTGRVLVLAGSEAGRLDPSQAIDAEPPAASLFKLVTAAATLEETP---LAPNS 159
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
++ S +A + K + L
Sbjct: 160 KVSYSGHAHTLYRNQVAQKLRKWAHQITLSYSFAQSNNPVFGRLGVFRLGHGLLTRYAQA 219
Query: 139 NNTSKNLGL---------------SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
+ L + T+A A++
Sbjct: 220 LGFEQQLDFELPVEPSHLFNLNPKDSFAVAELASGYNRETTTSALHAALMVSTFVNGGRM 279
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA---SGFNIVASAIQ--GDQS 238
Y + + +G +G KT +A + G+
Sbjct: 280 PQPYVVQRVTDARGDLLYVGQPDIG--PPVLSPKTCNDMEDLLHATVTCGTARREFGNSR 337
Query: 239 LIAVI----LGALDRNTRNKVSASLLSM 262
V+ LG R L
Sbjct: 338 RDKVLRRLDLGGKTGTIRGPDRTELYQW 365
>gi|219920905|emb|CAQ76630.1| beta-lactamase [Klebsiella oxytoca]
gi|219920911|emb|CAQ76633.1| beta-lactamase [Klebsiella oxytoca]
gi|219920939|emb|CAQ76647.1| beta-lactamase [Klebsiella oxytoca]
gi|219920943|emb|CAQ76649.1| beta-lactamase [Klebsiella oxytoca]
Length = 275
Score = 37.6 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 34/211 (16%), Positives = 58/211 (27%), Gaps = 5/211 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVI 243
G KTG N +A + L+ V
Sbjct: 234 VGDKTGAGDYGTTNDIAVIWPENHAPLVLVT 264
>gi|296114775|ref|ZP_06833425.1| beta-lactamase [Gluconacetobacter hansenii ATCC 23769]
gi|295978699|gb|EFG85427.1| beta-lactamase [Gluconacetobacter hansenii ATCC 23769]
Length = 334
Score = 37.6 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 28/270 (10%), Positives = 72/270 (26%), Gaps = 31/270 (11%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSI------AETNKLP--YYTLLDTNTGHV----IAENYPD 48
+R+ ++ + ++ P + A+T + + +G +
Sbjct: 33 LRRGVMTATVGLVCAAAPVQAATLAQDVAKTVSGQPGSFAVYAAMSGQRPQVCL---NCT 89
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS-------- 100
N AS KL + I + + S +
Sbjct: 90 DYINAASTMKLFVMDAAYDMFTRGTLQPQETIVVHNRFHSLVGTRSFSLEQKEDSYDPLY 149
Query: 101 -----TMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN-NTSKNLGLSATHFMN 154
+T+ ++++I S+N + E + M+ K +
Sbjct: 150 AQIGRPVTVSELVRVMIQYSSNLATNLMVERIGVPY--IHAVMHAQHLKGVRFGRMIEDY 207
Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGAD 214
+ TA+ + + ++ ++G+ + +
Sbjct: 208 DANDKGIRNEMTAKGLGMFMQKLDQGKIVGPAQSAAMIDILRGQTFNDMIPPGLPPGTPV 267
Query: 215 GMKTGFTCASGFNIVASAIQGDQSLIAVIL 244
KTG+ + + + I V+L
Sbjct: 268 AHKTGWVDGVRNDAGIVFLPDGRHYILVML 297
>gi|221638747|ref|YP_002525009.1| Pbp2 protein [Rhodobacter sphaeroides KD131]
gi|221159528|gb|ACM00508.1| Pbp2 protein [Rhodobacter sphaeroides KD131]
Length = 648
Score = 37.6 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 20/185 (10%), Positives = 39/185 (21%), Gaps = 44/185 (23%)
Query: 26 NKLPYYTLLDTNTGHVIA------------------------ENYPDHPW---------N 52
+ +D TG ++A P
Sbjct: 265 AESAAAVAIDVITGDILAICSSPSFDPNLFVRGISFKDYAALTENDHRPLANKAVQGAYP 324
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
P S K++TA I+ S Y P + ++
Sbjct: 325 PGSTFKMVTALAALEAG-----------VITPETSVYCPGHYETGGRRFHCWKRGGHGMV 373
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAI 172
S + ++ + + + LGL H + + + A
Sbjct: 374 SLSRSLAESCDVYYYDIAQRVGIDKIAEMGRRLGLGMRHDLPMSAITEGIMPDKAWKRQR 433
Query: 173 LSWRI 177
Sbjct: 434 YEQDW 438
>gi|297199552|ref|ZP_06916949.1| beta-lactamase [Streptomyces sviceus ATCC 29083]
gi|197713522|gb|EDY57556.1| beta-lactamase [Streptomyces sviceus ATCC 29083]
Length = 303
Score = 37.6 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 31/259 (11%), Positives = 64/259 (24%), Gaps = 17/259 (6%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLPYYTL---LDT---------NTGHVIAENYPDH 49
R L +++ A+ + L D TG + D
Sbjct: 19 RTLLAAGTATLVTGASTAAYAADDITARLHALEERYDARLGVFAHHVTTGRS-VRHRADE 77
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNAL 108
+ S+ K + A V L +L I ++ P + MT+
Sbjct: 78 RFPMCSVFKALAAAAVLRDLDRDGEVLARRIHYTEADLVQPGSDQTAAHLAEGMTIAELA 137
Query: 109 KLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
+ I S N + +F + + + L A + +
Sbjct: 138 DVAITFSDNTAGNLLLRELGGPTAITRFARSLGDRVTRLDRWEPELNTAEPWRRTDTTSP 197
Query: 167 ARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKT-GFTCASG 225
+ D + + N A KT G + +
Sbjct: 198 YAIGRTYGRLVLGDALDRRDRQLLTHWLLNNTTSVNRFHAGLPKTWTIADKTGGGSYGTN 257
Query: 226 FNIVASAIQGDQSLIAVIL 244
++ + ++ +L
Sbjct: 258 NDVGVVWTEDGDPIVLSVL 276
>gi|257470653|ref|ZP_05634743.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC
49185]
gi|317064859|ref|ZP_07929344.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC
49185]
gi|313690535|gb|EFS27370.1| D-alanyl-D-alanine carboxypeptidase [Fusobacterium ulcerans ATCC
49185]
Length = 477
Score = 37.6 bits (85), Expect = 3.0, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ +D TG V+A++ PAS+ K++T+
Sbjct: 51 SFYAVDLKTGKVVADHRGKSALVPASVMKIITSAAALE 88
>gi|310793488|gb|EFQ28949.1| beta-lactamase [Glomerella graminicola M1.001]
Length = 393
Score = 37.3 bits (84), Expect = 3.0, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
D NT +A + AS+TKL T ++ L
Sbjct: 40 DLNTKKSLAADNI---LTLASVTKLFTTIAALQLVERGILSLDQ 80
>gi|261493678|ref|ZP_05990197.1| S13 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
haemolytica serotype A2 str. BOVINE]
gi|261494345|ref|ZP_05990839.1| S13 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261309994|gb|EEY11203.1| S13 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261310678|gb|EEY11862.1| S13 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
haemolytica serotype A2 str. BOVINE]
Length = 481
Score = 37.3 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+ +F++ + + + + +T +I + D PAS
Sbjct: 11 LNKFILSTLLIPSITQAEINTEELLNTLPAGTSVSFIAKNLDTNQIITQYQSDIFMLPAS 70
Query: 56 LTKLMTAYVV 65
K+ TA
Sbjct: 71 TQKVFTALAA 80
>gi|118497594|ref|YP_898644.1| beta-lactamase class A [Francisella tularensis subsp. novicida
U112]
gi|195536294|ref|ZP_03079301.1| beta-lactamase [Francisella tularensis subsp. novicida FTE]
gi|208779395|ref|ZP_03246741.1| beta-lactamase [Francisella novicida FTG]
gi|118423500|gb|ABK89890.1| beta-lactamase class A [Francisella novicida U112]
gi|194372771|gb|EDX27482.1| beta-lactamase [Francisella tularensis subsp. novicida FTE]
gi|208745195|gb|EDZ91493.1| beta-lactamase [Francisella novicida FTG]
Length = 294
Score = 37.3 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 33/212 (15%), Positives = 53/212 (25%), Gaps = 3/212 (1%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
+ S K + + +L I ISKN + TM
Sbjct: 55 FAVNASFYFPICSTYKFLVVGAILKQSMTDNKLLNQKIKISKNQIVEYSPITRRHINQTM 114
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
T+ + + + I + + +N + +
Sbjct: 115 TVKQLCQASMQGDNTATNILIEKLGGLKNLNKFILSLADHATKVANLEPKVNHVSLTTNE 174
Query: 163 HYTTARDMAILSWRIKT--DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+ TT + MA ++ D H K I N A G KTG
Sbjct: 175 NKTTPKIMARDINKLAFSDDILNKKHRLMFKQWLIASNTSNNRIAAEVPDEWEVGDKTGT 234
Query: 221 TCASGFNIVASAIQGDQS-LIAVILGALDRNT 251
N VA D +I I +
Sbjct: 235 CQYGTTNDVAIIWPDDNRAVIMAIFYTQSQKN 266
>gi|254387600|ref|ZP_05002839.1| penicillin-binding protein PBP [Streptomyces clavuligerus ATCC
27064]
gi|294815013|ref|ZP_06773656.1| Penicillin-binding protein PBP [Streptomyces clavuligerus ATCC
27064]
gi|326443381|ref|ZP_08218115.1| secreted penicillin-binding protein [Streptomyces clavuligerus ATCC
27064]
gi|21552252|gb|AAK56496.1| penicillin-binding protein PBP [Streptomyces clavuligerus]
gi|30088981|gb|AAP13507.1| Orf18 [Streptomyces clavuligerus]
gi|197701326|gb|EDY47138.1| penicillin-binding protein PBP [Streptomyces clavuligerus ATCC
27064]
gi|294327612|gb|EFG09255.1| Penicillin-binding protein PBP [Streptomyces clavuligerus ATCC
27064]
Length = 494
Score = 37.3 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 7/124 (5%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD + G +A + P S K++TA T +S +
Sbjct: 199 LDKDKGKPLANRALRETFPPGSTFKILTAAAALEHGVIDDIDAKTD-AVSPYPLPQSTNT 257
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ G+ +LK + S N++ L K V M +T++ G + +
Sbjct: 258 VGSEAGNAACDKVSLKTAMQHSCNNV------FLDAAVKLGVDKMRDTAEKFGFNEDVYS 311
Query: 154 NAHG 157
+A G
Sbjct: 312 DAFG 315
>gi|77462877|ref|YP_352381.1| peptidoglycan glycosyltransferase [Rhodobacter sphaeroides 2.4.1]
gi|126461769|ref|YP_001042883.1| peptidoglycan glycosyltransferase [Rhodobacter sphaeroides ATCC
17029]
gi|77387295|gb|ABA78480.1| peptidoglycan glycosyltransferase [Rhodobacter sphaeroides 2.4.1]
gi|126103433|gb|ABN76111.1| peptidoglycan glycosyltransferase [Rhodobacter sphaeroides ATCC
17029]
Length = 648
Score = 37.3 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 14/147 (9%), Positives = 27/147 (18%), Gaps = 37/147 (25%)
Query: 26 NKLPYYTLLDTNTGHVIA------------------------ENYPDHPW---------N 52
+ +D TG ++A P
Sbjct: 265 AESAAAVAIDVITGDILAICSSPSFDPNLFVRGISFKDYAALTENDHRPLANKAVQGAYP 324
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
P S K++TA T + E K + + + L
Sbjct: 325 PGSTFKMVTALAALEA---GVITPETSVYC-PGHYETGGRRFHCWKRGGHGMVSLSRSLS 380
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMN 139
+ + +
Sbjct: 381 ESCDVYYYDIAQRVGIDKIAEMGRRLG 407
>gi|239978977|ref|ZP_04701501.1| cell division protein FtsI/penicillin-binding protein [Streptomyces
albus J1074]
gi|291450856|ref|ZP_06590246.1| cell division protein FtsI/penicillin-binding protein [Streptomyces
albus J1074]
gi|291353805|gb|EFE80707.1| cell division protein FtsI/penicillin-binding protein [Streptomyces
albus J1074]
Length = 671
Score = 37.3 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 30/172 (17%)
Query: 13 LSNIFPFLSIAETNKLPYY----TLLDTNTGHVIAENYP--------------------- 47
+ + K + DT TG ++A
Sbjct: 311 IQWAAQNAIAEQVTKSKAARGYVIVQDTATGEILALANAPGFDPNDLTRAAATSLGNAAV 370
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P S K+M+ V ++ + T
Sbjct: 371 QDAYEPGSTAKVMSMAAVLEENAATPGT-----HVTVPNRLHRGDRLFQDDVDHPTWYLT 425
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
L ++ KS+N + E L KT+ + + +++ + G+ + G
Sbjct: 426 LNGVLAKSSNIGTILAVEQLGKTQPEANKVLHSYLRKFGIGRPTGLGFPGET 477
>gi|300854825|ref|YP_003779809.1| putative beta-lactamase [Clostridium ljungdahlii DSM 13528]
gi|300434940|gb|ADK14707.1| putative beta-lactamase [Clostridium ljungdahlii DSM 13528]
Length = 257
Score = 37.3 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 34/199 (17%), Positives = 67/199 (33%), Gaps = 5/199 (2%)
Query: 31 YTLLD-TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+++ TG I + + ASL K+ + + +KE K L IT+ +
Sbjct: 18 AFVIENLKTGEKI-AYNENVVVSSASLIKIPIMMEILNQVKEGKLSLKQRITVEDDVKVP 76
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE-SLCKTEKKFVQHMNNTSKNLGLS 148
+ + G++ TL + + L+I++S N A + + + +++ + + L
Sbjct: 77 FSILNLLESGNSYTLKDVITLMIIQSDNTAANILMDLAGMDNVNNYIKDLEIKNTVLQRK 136
Query: 149 ATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+ TTA DMA I Y I + + +
Sbjct: 137 MLDSKARKE--GRENKTTAADMAKFFEIIYKGEKAKEFYSVIMKNILTSQLDNSVMRLNI 194
Query: 209 TFLGADGMKTGFTCASGFN 227
KTG +
Sbjct: 195 PDDIRIAHKTGDLNGISHD 213
>gi|167616211|ref|ZP_02384846.1| class A beta-lactamase precursor [Burkholderia thailandensis Bt4]
Length = 294
Score = 37.3 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 69/229 (30%), Gaps = 6/229 (2%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
LDT TG I + D + S K M + V + A+L I +K
Sbjct: 53 VALDTATGARI-AHRADERFPFCSTFKTMLSAAVLARSAGDAALLQRRIPYAKRDLVRYS 111
Query: 92 SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSA 149
+ G+ MT+ + S N A + + + + + + + L
Sbjct: 112 PITEKHVGAGMTVAELCAATLQYSDNTAANLLIALLGGPQAVTAYARSIGDATFRLDRRE 171
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGT 209
T A + T A A + + D Q+ + K A
Sbjct: 172 TELNTAIPGDERDTTTPAAMAASVRRLLVGDALGTAQRAQLNAWMLGNKTGDARIRAGVP 231
Query: 210 FLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKVSA 257
KTG N + A D+ ++ V+ +RN +
Sbjct: 232 AGWRVADKTGTGDYGTGNDIGVAYPPDRAPIVFVV--YTTMRSRNAQAR 278
>gi|118469257|ref|YP_888510.1| penicillin binding protein transpeptidase domain-containing protein
[Mycobacterium smegmatis str. MC2 155]
gi|118170544|gb|ABK71440.1| Penicillin binding protein transpeptidase domain protein
[Mycobacterium smegmatis str. MC2 155]
Length = 648
Score = 37.3 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 25/82 (30%)
Query: 23 AETNKLPYYTLLDTNTGHVIAENYPDH----------------------PWNPASLTKLM 60
A K +LD TG V+A + + P+ P S+ K++
Sbjct: 301 ASGAKNVSAVVLDAKTGEVLAMSNDNTFDPSQDIGRQADRQMGNPSVSSPFEPGSVNKIV 360
Query: 61 TAYVVFSFLKEKKAMLTTPITI 82
TA + +
Sbjct: 361 TAAAAIEN---GLTNPDEVLQV 379
>gi|297545248|ref|YP_003677550.1| peptidoglycan-binding domain 1 protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296843023|gb|ADH61539.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 420
Score = 37.3 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 32/241 (13%), Positives = 74/241 (30%), Gaps = 25/241 (10%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D NTG + E + AS K+ + +++ + + K + ++ E +
Sbjct: 196 IDLNTGQTL-EINGYDSFIAASTYKVPLNFYLYTLITDGKIDPNMKVQYTQADYEGGAGS 254
Query: 94 STFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
S T+ + I +S N + I +++ M +
Sbjct: 255 IQADPVGSYYTIRELSRRSIEESDNIASNMIMR--VVGRDNYIKFMEKLGAYV------- 305
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ + T+ RDM+ + + D+ + + N + G
Sbjct: 306 -----IPYSSNITSPRDMS-MYMKKLLDYVNAHPDTAGELMYYLKNTIYNDRISYPIPDG 359
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-----GALDRNTRN--KVSASLLSMGFY 265
+ ++ N A + I +L G+ D + + ++ F
Sbjct: 360 IEVAHKIGNLSNVVNDTAIVFHPARPYILTVLANDVDGSDDSYAYTVIRQISKMV-YDFQ 418
Query: 266 N 266
N
Sbjct: 419 N 419
>gi|295839281|ref|ZP_06826214.1| beta-lactamase [Streptomyces sp. SPB74]
gi|197696896|gb|EDY43829.1| beta-lactamase [Streptomyces sp. SPB74]
Length = 362
Score = 37.3 bits (84), Expect = 3.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD P++ ASLTKL TA ++ L T
Sbjct: 60 PDTPFDLASLTKLFTAIATLQQVERGTLALDTR 92
>gi|322421255|ref|YP_004200478.1| penicillin-binding protein transpeptidase [Geobacter sp. M18]
gi|320127642|gb|ADW15202.1| penicillin-binding protein transpeptidase [Geobacter sp. M18]
Length = 443
Score = 37.3 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 12/57 (21%)
Query: 32 TLLDTNTGHVIA--ENYPDHP----------WNPASLTKLMTAYVVFSFLKEKKAML 76
++ TG ++A + + P + ASL K++TA K
Sbjct: 143 VAIEPKTGRILATVSHSANRPEWERGANYQLYPMASLFKIVTATAALEEKKVGPDTP 199
>gi|152981665|ref|YP_001352260.1| Beta-lactamase class A [Janthinobacterium sp. Marseille]
gi|151281742|gb|ABR90152.1| Beta-lactamase class A [Janthinobacterium sp. Marseille]
Length = 299
Score = 37.3 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 27/194 (13%), Positives = 48/194 (24%), Gaps = 7/194 (3%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ N V E + + S K+M A + + +L I K+ E
Sbjct: 56 SALNM-ANDNRV--EYRAEERFPLCSTFKVMVAAAILQRSASEAQLLQKRIRYKKDQVEK 112
Query: 90 PPS--NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNL 145
+ MT+ + S N A + +++ + + L
Sbjct: 113 SGYAPVTQKHLADGMTIAELCAATLQYSDNAAANFLMTELGGPAAVTAYMRSIGDDVFRL 172
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
+A + T A L + Q+
Sbjct: 173 DRWEPELNSAIPGDERDTSTPAAVERSLEKIALGNALANPQREQLVSWLKGNTTGSKRML 232
Query: 206 AVGTFLGADGMKTG 219
A G KTG
Sbjct: 233 AGVPRGWIVGDKTG 246
>gi|118590430|ref|ZP_01547832.1| Beta-lactamase class A [Stappia aggregata IAM 12614]
gi|118436893|gb|EAV43532.1| Beta-lactamase class A [Stappia aggregata IAM 12614]
Length = 331
Score = 37.3 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
VI D + AS K+ A V + + L + + +
Sbjct: 57 EVI-AFNGDETFAMASTYKVAIATTVLDRVDRGELSLDQLVEVPLDMFVT 105
>gi|312884005|ref|ZP_07743722.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309368463|gb|EFP95998.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 472
Score = 37.3 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET------NKLPYYTLLDTNTGHVIAEN--YPDHPWN 52
M + L + + ++S + A T N TL+++ V +N + +
Sbjct: 1 MWRSLCVCSAILMSVVTAHAIHASTFVDKLPNSTRSATLIESLNDSVRYQNTENQNQLFP 60
Query: 53 PASLTKLMTAYVV 65
PAS KL+TA
Sbjct: 61 PASTLKLVTALAA 73
>gi|258453344|ref|ZP_05701329.1| beta-lactamase [Staphylococcus aureus A5937]
gi|257864552|gb|EEV87295.1| beta-lactamase [Staphylococcus aureus A5937]
gi|281334684|gb|ADA61768.1| Beta-lactamase [Staphylococcus epidermidis]
Length = 281
Score = 37.3 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPW 51
M++ + +IA+A++ + P + Y LDT +G + D +
Sbjct: 1 MKKLIFLIAIALVLSACNSNSPHAKELNDLEKKYNAHIGVYALDTKSGKE-VKFNSDKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L I I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKIHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + + + + K LG T+ +
Sbjct: 118 MTYSDNTANNKIIKEI-----GGNKKVKQRLKGLGDKVTNPVRYE 157
>gi|284036781|ref|YP_003386711.1| beta-lactamase [Spirosoma linguale DSM 74]
gi|283816074|gb|ADB37912.1| beta-lactamase [Spirosoma linguale DSM 74]
Length = 517
Score = 37.3 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 33/112 (29%)
Query: 1 MRQ----FLVIIAMAMLSNIFPF---LSIAETNKLPYYT-------------LLDTNTGH 40
M+ FL++ + ++++ F + + Y + G
Sbjct: 1 MKNNLLVFLLVTSWCVVTSAFAQSKKTATDPVTRYDAYIQQAVRDWKVPGLTVTVVKDGK 60
Query: 41 VIAEN-------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ + + AS TK MTA + + E K P
Sbjct: 61 ILLKKGYGVRVIGKPDPVDSQTLFAMASTTKAMTAACLGMMVDEGKLNWDDP 112
>gi|294813267|ref|ZP_06771910.1| Beta-lactamase [Streptomyces clavuligerus ATCC 27064]
gi|326441793|ref|ZP_08216527.1| beta-lactamase [Streptomyces clavuligerus ATCC 27064]
gi|294325866|gb|EFG07509.1| Beta-lactamase [Streptomyces clavuligerus ATCC 27064]
Length = 314
Score = 37.3 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 33/241 (13%), Positives = 65/241 (26%), Gaps = 12/241 (4%)
Query: 34 LDTNTGH-VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
L+ TG V+ + D + SL K + V L A L I ++
Sbjct: 75 LNLATGRSVL--HRADERFPMCSLFKTIAVAAVLRDLDRDGAFLARRIRYTQADLVEHSP 132
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSAT 150
+ + + MT+ + +S N A + +F + + + L
Sbjct: 133 VTPGRLSTGMTVSELCGAAVCRSDNSAANLLLRELGGPSAVTRFCRSVGDRVTRLDRWEP 192
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+A + + + ++ + + A
Sbjct: 193 ALNSAEPWRAEDTTSPRAIGRTYTRLVLGPVLDRPDRRRLTEWLLANTTSGDRFRAGLPG 252
Query: 211 LGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVIL------GALDRNTRNKVSASLLSMG 263
G KTG N A + + +L A +A+LL+
Sbjct: 253 DWRLGDKTGAGEHGTNNDAGIAWKPDGTPVALAVLTTKREPTAPSDPPLIAKTAALLARA 312
Query: 264 F 264
Sbjct: 313 L 313
>gi|254388654|ref|ZP_05003887.1| beta-lactamase [Streptomyces clavuligerus ATCC 27064]
gi|197702374|gb|EDY48186.1| beta-lactamase [Streptomyces clavuligerus ATCC 27064]
Length = 309
Score = 37.3 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 33/241 (13%), Positives = 65/241 (26%), Gaps = 12/241 (4%)
Query: 34 LDTNTGH-VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
L+ TG V+ + D + SL K + V L A L I ++
Sbjct: 70 LNLATGRSVL--HRADERFPMCSLFKTIAVAAVLRDLDRDGAFLARRIRYTQADLVEHSP 127
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSAT 150
+ + + MT+ + +S N A + +F + + + L
Sbjct: 128 VTPGRLSTGMTVSELCGAAVCRSDNSAANLLLRELGGPSAVTRFCRSVGDRVTRLDRWEP 187
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+A + + + ++ + + A
Sbjct: 188 ALNSAEPWRAEDTTSPRAIGRTYTRLVLGPVLDRPDRRRLTEWLLANTTSGDRFRAGLPG 247
Query: 211 LGADGMKTGFTCASGFNIVASAIQ-GDQSLIAVIL------GALDRNTRNKVSASLLSMG 263
G KTG N A + + +L A +A+LL+
Sbjct: 248 DWRLGDKTGAGEHGTNNDAGIAWKPDGTPVALAVLTTKREPTAPSDPPLIAKTAALLARA 307
Query: 264 F 264
Sbjct: 308 L 308
>gi|158335463|ref|YP_001516635.1| D-Ala-D-Ala carboxypeptidase [Acaryochloris marina MBIC11017]
gi|158305704|gb|ABW27321.1| D-Ala-D-Ala carboxypeptidase [Acaryochloris marina MBIC11017]
Length = 426
Score = 37.3 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFS 67
++ + P ASLTK+ T
Sbjct: 73 QLLVNHNAQQPLPAASLTKVATTLAALK 100
>gi|225867993|ref|YP_002743941.1| penicillin binding protein 2x [Streptococcus equi subsp.
zooepidemicus]
gi|225701269|emb|CAW98249.1| putative penicillin binding protein 2x [Streptococcus equi subsp.
zooepidemicus]
Length = 751
Score = 37.3 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 16/160 (10%), Positives = 37/160 (23%), Gaps = 26/160 (16%)
Query: 30 YYTLLDTNTGHVIAE-----NYPDH------------------PWNPASLTKLMTAYVVF 66
TL++ TG ++A D + P S K+MT
Sbjct: 292 SATLVNAKTGEILATTQRPTYNADTLEGLNSKSYSWQNILHQGQFEPGSTMKVMTLAAAI 351
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
K + + + + + ++ + S +
Sbjct: 352 DE---KVFNPDETFSNANGLTIADATIQDWAINEGISTGQYMTYAQGFSFSSNVGMTKLE 408
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
K++ ++ G+ + T
Sbjct: 409 QKMGNDKWMNYLTKFRFGFRTRFGLENEDPGIFPSDNIVT 448
>gi|229102394|ref|ZP_04233102.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
gi|228681041|gb|EEL35210.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-28]
Length = 363
Score = 37.3 bits (84), Expect = 3.2, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + AS K++ A + E K
Sbjct: 57 NGEVLTSINANKKLPLASTAKIVIAVEFAKQVSEGKISRDE 97
>gi|229115234|ref|ZP_04244644.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
gi|228668374|gb|EEL23806.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-3]
Length = 363
Score = 37.3 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + AS K++ A + E K
Sbjct: 57 NGEVLTSINANKKLPLASTAKIVIAVEFAKQVSEGKISRDE 97
>gi|167566792|ref|ZP_02359708.1| beta-lactamase precursor [Burkholderia oklahomensis EO147]
Length = 269
Score = 37.3 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 41/156 (26%), Gaps = 10/156 (6%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPD--HPWNPASLTK 58
M+ + + +L + AET D +G+ + D PAS K
Sbjct: 1 MKIRHALSSALVLLGCIAASARAETICTAIA---DAGSGNFLL-KDGDCSRRTTPASTFK 56
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL--DNALKLLIVKSA 116
+ + + + + P+ ++ + + + +
Sbjct: 57 IAISLMGYDAGFLR--NEHEPVLPYRDGYVDWGGAVWKQPTDPTRWLKYSVVWYSQRVTH 114
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
A A + + KN GL
Sbjct: 115 TLGAQRFARYAKAFDYGNADVSGDPGKNNGLDRAWI 150
>gi|253995808|ref|YP_003047872.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Methylotenera mobilis JLW8]
gi|253982487|gb|ACT47345.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Methylotenera mobilis JLW8]
Length = 477
Score = 37.3 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLP------YYTLLDTNTGHVIAENYPDHP 50
M++F I+++ +LS + P AE + + ++ I +Y D
Sbjct: 1 MKKFTFIVSLMLLSGLAHAELPKTVAAELAQSGVPASDVSIYVQAVDSRVPILSHYADKS 60
Query: 51 WNPASLTKLMTAYVVFS 67
NPAS+ K++T
Sbjct: 61 MNPASVMKMVTTNAALD 77
>gi|229012741|ref|ZP_04169911.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
gi|229061129|ref|ZP_04198480.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
gi|229134371|ref|ZP_04263184.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
gi|229168286|ref|ZP_04296011.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
gi|228615112|gb|EEK72212.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH621]
gi|228648992|gb|EEL05014.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST196]
gi|228718212|gb|EEL69850.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH603]
gi|228748576|gb|EEL98431.1| D-alanyl-D-alanine carboxypeptidase [Bacillus mycoides DSM 2048]
Length = 359
Score = 37.3 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 26/212 (12%), Positives = 56/212 (26%), Gaps = 15/212 (7%)
Query: 1 MRQFLVIIAMAML-----------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M F+++I+ L + ++ L+ V+ PD
Sbjct: 1 MGIFVLLISGNFLVKKVWSSNNDDAQYIASFIEEHKDEKNSALLI-KRNDKVVYSVNPDV 59
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS KL+ A + E K ++ +S N T + K
Sbjct: 60 VLPVASTMKLIVALEYTKQVTEGKIDPSS--FVSINDVNRYYVPGTDGGAQDRWQNYLQK 117
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+ +A+ + K L + + + H
Sbjct: 118 KEKITEGAVSLEEVAKGMVKFSSNANTEYLMEVLGLDNINRNL-QSLALPAHQPLFPIVS 176
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ + + + + K E+ ++Y
Sbjct: 177 SLYIPGYLHKELHVPKYKIEKKLKEMSQEQYR 208
>gi|195978688|ref|YP_002123932.1| cell division protein FtsI [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|225871091|ref|YP_002747038.1| penicillin binding protein 2x [Streptococcus equi subsp. equi 4047]
gi|195975393|gb|ACG62919.1| cell division protein FtsI [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|225700495|emb|CAW94935.1| putative penicillin binding protein 2x [Streptococcus equi subsp.
equi 4047]
Length = 751
Score = 37.3 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 16/160 (10%), Positives = 37/160 (23%), Gaps = 26/160 (16%)
Query: 30 YYTLLDTNTGHVIAE-----NYPDH------------------PWNPASLTKLMTAYVVF 66
TL++ TG ++A D + P S K+MT
Sbjct: 292 SATLVNAKTGEILATTQRPTYNADTLEGLNSKSYSWQNILHQGQFEPGSTMKVMTLAAAI 351
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
K + + + + + ++ + S +
Sbjct: 352 DE---KVFNPDETFSNANGLTIADATIQDWAINEGISTGQYMTYAQGFSFSSNVGMTKLE 408
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTT 166
K++ ++ G+ + T
Sbjct: 409 QKMGNDKWMNYLTKFRFGFRTRFGLENEDPGIFPSDNIVT 448
>gi|254361959|ref|ZP_04978090.1| S13 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
haemolytica PHL213]
gi|153093506|gb|EDN74486.1| S13 family serine-type D-Ala-D-Ala carboxypeptidase [Mannheimia
haemolytica PHL213]
Length = 481
Score = 37.3 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIA-----ETNKLPYYTLLDTNTGHVIAENYPDHPWNPAS 55
+ +F++ + + + + +T +I + D PAS
Sbjct: 11 LNKFILSTLLIPSITQAEINTEELLNTLPAGTSVSFIAKNLDTNQIITQYQSDIFMLPAS 70
Query: 56 LTKLMTAYVV 65
K+ TA
Sbjct: 71 TQKVFTALAA 80
>gi|295839426|ref|ZP_06826359.1| penicillin binding protein transpeptidase domain-containing protein
[Streptomyces sp. SPB74]
gi|295827471|gb|EFG65413.1| penicillin binding protein transpeptidase domain-containing protein
[Streptomyces sp. SPB74]
Length = 655
Score = 37.3 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 26/152 (17%)
Query: 30 YYTLLDTNTGHVIAENYP---------------------DHPWNPASLTKLMTAYVVFSF 68
Y + DT TG ++A + P S +K+M+ V
Sbjct: 317 YVIVQDTRTGEILALANAPGFDPNDLRHADVAALGNPALQDAYEPGSTSKIMSMAAVLEE 376
Query: 69 LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLC 128
K ++ T L ++ KS+N + L
Sbjct: 377 NKATPGT-----HVTVPGELRRGDRVFHDDVPHGTWHLTLNGVLAKSSNIGTILATGQLG 431
Query: 129 KTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
KT+ + + +++ + G+ + + G
Sbjct: 432 KTQPQANRVLSSYLRKFGIGSATGLGFPGETS 463
>gi|259563908|gb|ACW83067.1| CTX-M-15 beta-lactamase [Klebsiella pneumoniae]
Length = 138
Score = 37.3 bits (84), Expect = 3.3, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 17/97 (17%)
Query: 1 MRQFLVIIA--MAMLSNIFPFLSIAETNKLPYY------------TLLD-TNTGHVIAEN 45
+RQF ++ + +L P + + L++ + ++
Sbjct: 6 LRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILY-- 63
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
D + S +K+M A V + + +L + I
Sbjct: 64 RADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEI 100
>gi|289579043|ref|YP_003477670.1| peptidoglycan-binding protein [Thermoanaerobacter italicus Ab9]
gi|289528756|gb|ADD03108.1| Peptidoglycan-binding domain 1 protein [Thermoanaerobacter italicus
Ab9]
Length = 420
Score = 37.3 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 32/241 (13%), Positives = 74/241 (30%), Gaps = 25/241 (10%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D NTG + E + AS K+ + +++ + + K + ++ E +
Sbjct: 196 IDLNTGQTL-EINGYDSFIAASTYKVPLNFYLYTLITDGKIDPNMKVQYTQADYEGGAGS 254
Query: 94 STFKKG-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
S T+ + I +S N + I +++ M +
Sbjct: 255 IQADPVGSYYTIRELSRRSIEESDNIASNMIMR--VVGRDNYIKFMEKLGAYV------- 305
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ + T+ RDM+ + + D+ + + N + G
Sbjct: 306 -----IPYSSNITSPRDMS-MYMKKLLDYVNAHPDTAGELMYYLKNTIYNDRISYPIPDG 359
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVIL-----GALDRNTRN--KVSASLLSMGFY 265
+ ++ N A + I +L G+ D + + ++ F
Sbjct: 360 IEVAHKIGNLSNVVNDTAIVFHPARPYILTVLANDVDGSDDSYAYTVIRQISKMV-YDFQ 418
Query: 266 N 266
N
Sbjct: 419 N 419
>gi|323528878|ref|YP_004231030.1| Beta-lactamase [Burkholderia sp. CCGE1001]
gi|323385880|gb|ADX57970.1| Beta-lactamase [Burkholderia sp. CCGE1001]
Length = 315
Score = 37.3 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 35/243 (14%), Positives = 68/243 (27%), Gaps = 15/243 (6%)
Query: 13 LSNIFPFLSIAETNKLPY-----YTLLDTNTGHVIAEN-YPDHPWNPASLTKLMTAYVVF 66
++ + E + +++DT +G + + D + S KL+ A +
Sbjct: 46 FASADAIRARLEDIQAQSGGRLGVSIVDTTSG--LHAGLHADERFPMCSTFKLLAAGAIL 103
Query: 67 SFLKEKKAMLTTPITIS-----KNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
+ + + L I S + + M++ K I S N A
Sbjct: 104 ARVDRGEEDLQRRIVYSKSELVPYSPATSKHTRELTGNAGMSVAQLCKAAITLSDNTAAN 163
Query: 122 AIAESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKT 179
+ ++ FV+ + + L + A T + L +
Sbjct: 164 LLLQTFGGPAGLTAFVRSLGDGITRLDRNEPTLNEATPGDPRDTTTPNAMLGNLRELVLG 223
Query: 180 DFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSL 239
+ Q+ + A G KTG N VA +
Sbjct: 224 ERLSSASRAQLLAWLAANETGGARIRAKLPKDWGVGDKTGTGEHGTANDVAILWPPGRGP 283
Query: 240 IAV 242
I V
Sbjct: 284 ILV 286
>gi|237741379|ref|ZP_04571860.1| beta-lactamase [Fusobacterium sp. 4_1_13]
gi|229430911|gb|EEO41123.1| beta-lactamase [Fusobacterium sp. 4_1_13]
Length = 261
Score = 37.3 bits (84), Expect = 3.4, Method: Composition-based stats.
Identities = 31/204 (15%), Positives = 60/204 (29%), Gaps = 5/204 (2%)
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASE-YPPSNSTFKKGST 101
D AS+ KL+ + + E K L+ + ++ G
Sbjct: 35 FSVNGDKKVLSASMIKLLILAELMKKIFENKFSLSDTVMMANFMKIGGDGVLKELNTGHH 94
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTE-KKFVQHMNNTSKNLGLSATHFMNAHGVVQ 160
TL L+I+ S N + + L + + ++ LG
Sbjct: 95 FTLKELATLMIIVSDNQATNILIDFLGMENINQLGKELDLKETFLGRK--MMDAEARKKG 152
Query: 161 HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+ +YT A D+++L + L+I ++
Sbjct: 153 YDNYTCADDISLLLK-LIYQEKLINKEASQLMLDILLRQQQGERLQRYLPSDIKIAHKCG 211
Query: 221 TCASGFNIVASAIQGDQSLIAVIL 244
+ N GD++ I V+L
Sbjct: 212 DLDNLENDGGIIWLGDRAYILVVL 235
>gi|332664026|ref|YP_004446814.1| membrane alanyl aminopeptidase [Haliscomenobacter hydrossis DSM 1100]
gi|332332840|gb|AEE49941.1| Membrane alanyl aminopeptidase [Haliscomenobacter hydrossis DSM 1100]
Length = 1140
Score = 37.3 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 35/239 (14%), Positives = 67/239 (28%), Gaps = 14/239 (5%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSNSTFKKGSTMTL 104
+PAS K VF + K L+ I + S + +G L
Sbjct: 902 NEKISIHPASTMKTPVLVEVFKQANQGKFKLSDSIVLKNEFKSIVDGSPYSLSEGDDSDL 961
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKF------VQHMNNTSKNLGLSATHFMNAHGV 158
++ S D+A A+ ++ T ++LGL
Sbjct: 962 PWYQRMGQKVSIYDLARAMIVRSSNLATNMLIELVGAENTTQTMRDLGLQDIMVRRGVED 1021
Query: 159 -----VQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+ TA D+ +L RI Q + +++ +
Sbjct: 1022 SKAYAAGLNNSATAYDLMLLMERIGRGEAGRPVDCQEMIKILSDQEFNDVIPTCLPADVQ 1081
Query: 214 DGMKTGFTCASGFNIVASAIQGDQSLIAVIL--GALDRNTRNKVSASLLSMGFYNKTDR 270
KTG+ + + IL G + N+ ++ M + + +
Sbjct: 1082 IAHKTGWITQHHHDSALIISPEGRYFSFTILSKGWTNETAANEAMGKVVEMAYRYFSKK 1140
>gi|303231009|ref|ZP_07317752.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6]
gi|302514391|gb|EFL56390.1| conserved hypothetical protein [Veillonella atypica ACS-049-V-Sch6]
Length = 271
Score = 37.3 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 77/240 (32%), Gaps = 17/240 (7%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGH---VIAENYPDHPWNPASLTKLMTA 62
+I+ ++ + L ++ Y + N G ++A + AS+ K +
Sbjct: 4 LIVGKSLEMQLAALLDTLPSDATVSYMVTRLNEGEEATIVASSKETIVHTGASMVKTLIL 63
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP-PSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
VF +++ L I +S++ + + + +L++V S N
Sbjct: 64 EYVFHLAAQEQLDLNDTIALSRSPRVEGAGALMELVGNHSFSYLELCRLMMVLSDNWATN 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-----QHGHYTTARDMAILSWR 176
+ ++L ++++N ++ LGL +Y TA DMA+L
Sbjct: 124 LLIQAL------GMENINARAEQLGLEHFEINRMMMDFTAVKENRENYITAMDMAVLLHH 177
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
I + + +++ + KTG +
Sbjct: 178 IYELRHTIYGH--EMWNILGRQQFRDILPFHWGEDVIFHHKTGSLDCVEHDAGIIETMNG 235
>gi|67973177|gb|AAY84123.1| beta-lactamase [Staphylococcus aureus]
Length = 268
Score = 37.3 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPW 51
M++ + +IA+A++ + P + Y LDT +G + D +
Sbjct: 1 MKKLIFLIAIALVLSACNSNSPHAKKLNDLEKKYNAHIGVYALDTKSGKE-VKFNSDKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L I I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQIPYN--KLNKKIHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + + ++ + K LG T+ +
Sbjct: 118 MTYSDNTANNKIIKEI-----GGIKKVKQRLKELGDKVTNPVRYE 157
>gi|31560464|ref|NP_058031.2| C-type lectin domain family 4 member F [Mus musculus]
gi|26333907|dbj|BAC30671.1| unnamed protein product [Mus musculus]
gi|148666677|gb|EDK99093.1| C-type lectin domain family 4, member f, isoform CRA_b [Mus
musculus]
Length = 548
Score = 37.3 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 20/179 (11%), Positives = 51/179 (28%), Gaps = 19/179 (10%)
Query: 57 TKLMTAYV------------VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
TK +TA + + K+++ + + +Y N +
Sbjct: 374 TKALTAKIQGEQNRLGALQEAVAAQKQEQKTQNQVLQLIAQNWKYFNGNFYYFSRDKKP- 432
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ + A + + + + VQ ++ +GL+ V +
Sbjct: 433 ---WREAEKFCTSQGAHLASVTSQEEQAFLVQTTSSGDHWIGLTDQGTEGIWRWVDGTPF 489
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
A+ K + H + + ++ N ++ TG++ A
Sbjct: 490 NNAQSKGF---WGKNQPDNWRHRNGEREDCVHVRQQWNDMACGSSYPWVCKKSTGWSAA 545
>gi|2497642|sp|P70194|CLC4F_MOUSE RecName: Full=C-type lectin domain family 4 member F; AltName:
Full=C-type lectin superfamily member 13; Short=C-type
lectin 13; AltName: Full=Kupffer cell receptor
gi|1669360|dbj|BAA13647.1| Kupffer cell receptor [Mus musculus]
gi|15489066|gb|AAH13647.1| C-type lectin domain family 4, member f [Mus musculus]
Length = 548
Score = 37.3 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 20/179 (11%), Positives = 51/179 (28%), Gaps = 19/179 (10%)
Query: 57 TKLMTAYV------------VFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
TK +TA + + K+++ + + +Y N +
Sbjct: 374 TKALTAKIQGEQNRLGALQEAVAAQKQEQKTQNQVLQLIAQNWKYFNGNFYYFSRDKKP- 432
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
+ + A + + + + VQ ++ +GL+ V +
Sbjct: 433 ---WREAEKFCTSQGAHLASVTSQEEQAFLVQTTSSGDHWIGLTDQGTEGIWRWVDGTPF 489
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
A+ K + H + + ++ N ++ TG++ A
Sbjct: 490 NNAQSKGF---WGKNQPDNWRHRNGEREDCVHVRQQWNDMACGSSYPWVCKKSTGWSAA 545
>gi|284007682|emb|CBA73418.1| beta-lactamase/D-alanine carboxypeptidase [Arsenophonus nasoniae]
Length = 430
Score = 37.3 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 2/98 (2%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
PD ASLTKLMT+ V+ +KK +T P+ + P + + L +
Sbjct: 104 PDSLIRIASLTKLMTSEVMIKLEADKKLRITDPLQNYSYFGTHIPIYNGKEPIRLYHLAS 163
Query: 107 AL--KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
+++
Sbjct: 164 HTSGLPREQPGGKIGRTVFVWPTQTNRWAWLKKAKMKC 201
>gi|254966861|gb|ACT97447.1| HOA-1 beta-lactamase [uncultured organism]
Length = 293
Score = 37.3 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 9/90 (10%), Positives = 24/90 (26%), Gaps = 9/90 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPYYTL----LDTNTGHVIAENYPDHPWN 52
M+++ + + F ++ + +++ G +
Sbjct: 1 MKKYFSFCLLGIFIFCFSQQNLKRDITKIIQSKNALVAVSVMNSK-GKTEVNINGNKKVP 59
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
S+ K A V + L I +
Sbjct: 60 MLSVFKFHIALAVLDLVDRGILDLEQNIFV 89
>gi|253699236|ref|YP_003020425.1| penicillin-binding protein transpeptidase [Geobacter sp. M21]
gi|251774086|gb|ACT16667.1| penicillin-binding protein transpeptidase [Geobacter sp. M21]
Length = 444
Score = 37.3 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 15/79 (18%)
Query: 32 TLLDTNTGHVIA-----------ENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTP 79
++ TG ++A E ++ P ASL K++TA K T
Sbjct: 144 VAMEPRTGRILATVSHSSVEPGWEKDGNYHLYPLASLFKIVTATAALESKK---VTPDTL 200
Query: 80 ITISKNASEYPPSNSTFKK 98
+ + P
Sbjct: 201 FAFNGRLTSESPKYWRVHP 219
>gi|149201707|ref|ZP_01878681.1| beta-lactamase precursor [Roseovarius sp. TM1035]
gi|149144755|gb|EDM32784.1| beta-lactamase precursor [Roseovarius sp. TM1035]
Length = 306
Score = 37.3 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 26/88 (29%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
+ + + AS K M V + E L I I + G TM+
Sbjct: 75 SHRAEERFLMASTFKTMLCGAVLHRVDEGDLDLEERIAIEAAEVLEYAPVTEKMVGETMS 134
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTE 131
+ + S N + + + +
Sbjct: 135 VGELCHAALDMSDNTATNLLIDRIEGPQ 162
>gi|172057974|ref|YP_001814434.1| peptidoglycan glycosyltransferase [Exiguobacterium sibiricum
255-15]
gi|171990495|gb|ACB61417.1| Peptidoglycan glycosyltransferase [Exiguobacterium sibiricum
255-15]
Length = 712
Score = 37.3 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 24/101 (23%)
Query: 32 TLLDTNTGHVIA-----ENYPD-------------HPWNPASLTKLMTAYVVFSF----- 68
++D TG ++A P+ + P S K+ T
Sbjct: 272 IVMDAKTGEILAMTDRPSFNPNLRDMTDFTNFAVSSRFEPGSTMKIFTLAAAIDAGVFRP 331
Query: 69 -LKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
K T+ K+ ++ +G + +
Sbjct: 332 NEPYKSGSYNYKGTVIKDYNDVGWGTIPMIEGVYHSSNVMF 372
>gi|329964561|ref|ZP_08301615.1| penicillin-binding protein, transpeptidase domain protein
[Bacteroides fluxus YIT 12057]
gi|328524961|gb|EGF52013.1| penicillin-binding protein, transpeptidase domain protein
[Bacteroides fluxus YIT 12057]
Length = 707
Score = 37.3 bits (84), Expect = 3.5, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 34/130 (26%), Gaps = 21/130 (16%)
Query: 31 YTLLDTNTGHV-------------IAENYPDHP---WNPASLTKLMTAYVVFSFLKEKKA 74
L++ TG V E + P S K + V + K
Sbjct: 265 AVLMEVATGEVKAIVNMMKANDGNYYEMNSNAISDMLEPGSTFKTASIMVALE---DGKI 321
Query: 75 MLTTPITISKNASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
T + S N ++L V S ++ I + +
Sbjct: 322 TPDTEVDTGNGIMNMYGSKMRDHNWHRGGYGKINVTRILEVSSNVGVSYLIDKHYKDNPQ 381
Query: 133 KFVQHMNNTS 142
KFV + S
Sbjct: 382 KFVDGLKRMS 391
>gi|326773850|ref|ZP_08233132.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinomyces viscosus C505]
gi|326635989|gb|EGE36893.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Actinomyces viscosus C505]
Length = 472
Score = 37.3 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+++D TG + + PAS K++TA+ S +
Sbjct: 102 TASVVDVATGEELLDRSAASGVTPASTNKVLTAWAALSSMGPGH 145
>gi|303228855|ref|ZP_07315668.1| conserved hypothetical protein [Veillonella atypica
ACS-134-V-Col7a]
gi|302516475|gb|EFL58404.1| conserved hypothetical protein [Veillonella atypica
ACS-134-V-Col7a]
Length = 271
Score = 37.3 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 77/240 (32%), Gaps = 17/240 (7%)
Query: 6 VIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGH---VIAENYPDHPWNPASLTKLMTA 62
+I+ ++ + L ++ Y + N G ++A + AS+ K +
Sbjct: 4 LIVGKSLEIQLAALLDTLPSDATVSYMVTRLNEGEEATIVASSKETIVHTGASMVKTLIL 63
Query: 63 YVVFSFLKEKKAMLTTPITISKNASEYP-PSNSTFKKGSTMTLDNALKLLIVKSANDIAV 121
VF +++ L I +S++ + + + +L++V S N
Sbjct: 64 EYVFHLAAQEQLDLNDTIALSRSPRVEGAGALMELVGNHSFSYLELCRLMMVLSDNWATN 123
Query: 122 AIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV-----QHGHYTTARDMAILSWR 176
+ ++L ++++N ++ LGL +Y TA DMA+L
Sbjct: 124 LLIQAL------GMENINARAEQLGLEYFEINRMMMDFTAVKENRENYITAMDMAVLLHH 177
Query: 177 IKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGD 236
I + + +++ + KTG +
Sbjct: 178 IYELRHTIYGH--EMWNILGRQQFRDILPFHWGEDVIFHHKTGSLDCVEHDAGIIETMNG 235
>gi|237748208|ref|ZP_04578688.1| beta-lactamase [Oxalobacter formigenes OXCC13]
gi|229379570|gb|EEO29661.1| beta-lactamase [Oxalobacter formigenes OXCC13]
Length = 312
Score = 37.3 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 22/163 (13%), Positives = 44/163 (26%), Gaps = 16/163 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLD--TNTGHVI--------AENYPDHP 50
M L + S + L + D G VI A +
Sbjct: 1 MSTLLASFTLVTASCLASPLQENID-----AIVKDKPAQIGVVIEGFDPHQHAGFNENTR 55
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ S+ K A V + + K L + + + ++S ++
Sbjct: 56 FPMQSVFKFPVALAVLDQVDKGKINLDETLLLKPSDLLPN-THSPLREKYPEANAAVSIG 114
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
I+ + + Q ++ KNLG++
Sbjct: 115 EIINETVSNSDNNGCDILLRLVGGPQAVDQYIKNLGIADMQIA 157
>gi|302545275|ref|ZP_07297617.1| beta-lactamase [Streptomyces hygroscopicus ATCC 53653]
gi|302462893|gb|EFL25986.1| beta-lactamase [Streptomyces himastatinicus ATCC 53653]
Length = 396
Score = 37.3 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
DT+TG + P+ + AS+TK+ A V+ E + L
Sbjct: 77 SAGYADTDTGR---KRSPEDHFRAASITKMFIATVLLQLEAEGRLSLDD 122
>gi|297202687|ref|ZP_06920084.1| beta-lactamase [Streptomyces sviceus ATCC 29083]
gi|197713262|gb|EDY57296.1| beta-lactamase [Streptomyces sviceus ATCC 29083]
Length = 377
Score = 37.3 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 18/80 (22%)
Query: 15 NIFPFLSIAETNKLPYYTLL---------------DTNTGHVIAENYPDHPWNPASLTKL 59
+ L+ + D +G PD + S TK+
Sbjct: 39 ALRAALAGLPDANATAALVRVGGTDGTWRGSSGVHDLASGRP---ADPDARFRAGSTTKV 95
Query: 60 MTAYVVFSFLKEKKAMLTTP 79
+TA V + E + L TP
Sbjct: 96 VTAAAVLRLVAEGRIDLDTP 115
>gi|4775480|emb|CAB42615.1| beta-lactamase OXY-1a [Klebsiella oxytoca]
Length = 291
Score = 37.3 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 11/238 (4%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
G KTG N +A + L+ V A R +A +++ G
Sbjct: 234 VGDKTGAGDYGTTNDIAVIWPENHAPLVPVTYFTQPQQDAKSRKKVLAAAAKIVTEGL 291
>gi|313890668|ref|ZP_07824295.1| penicillin-binding protein 2X [Streptococcus pseudoporcinus SPIN
20026]
gi|313120979|gb|EFR44091.1| penicillin-binding protein 2X [Streptococcus pseudoporcinus SPIN
20026]
Length = 750
Score = 37.3 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 12/135 (8%), Positives = 32/135 (23%), Gaps = 26/135 (19%)
Query: 30 YYTLLDTNTGHVIA-----ENYPDHP------------------WNPASLTKLMTAYVVF 66
TL++ TG ++A D + P S K+MT
Sbjct: 291 SATLVNAKTGEILATSQRPSYNADTLEGLNNKKYNWKSALYQNNFEPGSTMKVMTLAAAI 350
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ + + + ++ + + +
Sbjct: 351 DE---GVFKPNEVYSNANGLKIADATIQDWSINEGISTGQYMTYAQGFAYSSNVGMTKLE 407
Query: 127 LCKTEKKFVQHMNNT 141
K ++ +++
Sbjct: 408 QKMGNKTWLDYLSKF 422
>gi|86742322|ref|YP_482722.1| penicillin-binding protein, transpeptidase [Frankia sp. CcI3]
gi|86569184|gb|ABD12993.1| penicillin-binding protein, transpeptidase [Frankia sp. CcI3]
Length = 563
Score = 37.3 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 30 YYTLLDTNTGHVIA---------ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+DT TG ++A + P S K++TA K L
Sbjct: 283 AMVAIDTRTGAILALANHPPSGSSRAVRGKYPPGSTFKIVTATAALMNGKAPDMPLDCTQ 342
Query: 81 TIS 83
T+S
Sbjct: 343 TVS 345
>gi|78043714|ref|YP_359208.1| peptidoglycan biosynthesis transpeptidase [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995829|gb|ABB14728.1| peptidoglycan biosynthesis transpeptidase [Carboxydothermus
hydrogenoformans Z-2901]
Length = 650
Score = 37.3 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 26/251 (10%), Positives = 53/251 (21%), Gaps = 60/251 (23%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVI------------------------AENY 46
++ I + + LD +G V+
Sbjct: 238 SLKKTIAALQNRYPDARAGAVVALDVRSGEVLAMASYPTFDPAAFPKGLTQKQVDEYIRN 297
Query: 47 PDHPW---------NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFK 97
PD P P S K++T L T S+ + +
Sbjct: 298 PDRPLYNRAVSATYPPGSTFKMVTGMAAL---------LNRVTTPSETIFDPGYYKLGNR 348
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+ VK+ + ++ + V+ + K GL ++ G
Sbjct: 349 AFKDWNPRGHGVVNFVKAIKESCNVYFWTMARRL--GVEKIVEVGKQFGLGMMTGIDLPG 406
Query: 158 -------VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEI---------KGKKYP 201
+ T + + + KK
Sbjct: 407 ESSGLLPTPEWKKETNTAIIEKNLKPKIDKIKSDYEQRIARAKTSEEKKRLEAERDKKIQ 466
Query: 202 NTNWAVGTFLG 212
N + +
Sbjct: 467 AINRQIEIYRW 477
>gi|24378542|ref|NP_720497.1| hypothetical protein SMU.12 [Streptococcus mutans UA159]
gi|24376390|gb|AAN57803.1|AE014853_10 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 404
Score = 37.3 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST---- 101
D AS+TKL Y + +K+ + LT + +++ + G
Sbjct: 198 NEDKSMYSASVTKLPILYFIEKQIKDGRVKLTDKFKYIEQVNQFKGAYKVEGSGEMPKKA 257
Query: 102 ----MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
T+D+ LK + S N + + + K Q ++ +
Sbjct: 258 DNKYYTVDSLLKAVTQHSDNVASNILGYYIAHQYDKTYQKTVLRVADVKWNM 309
>gi|258448896|ref|ZP_05697005.1| beta-lactamase [Staphylococcus aureus A6224]
gi|257857792|gb|EEV80684.1| beta-lactamase [Staphylococcus aureus A6224]
gi|270055365|gb|ACZ58858.1| Beta-lactamase [Staphylococcus aureus]
gi|270299842|gb|ACZ68648.1| Beta-lactamase [Staphylococcus aureus]
gi|282166353|gb|ADA80369.1| Beta-lactamase [Staphylococcus epidermidis]
gi|282166796|gb|ADA80812.1| Beta-lactamase [Staphylococcus aureus]
Length = 281
Score = 37.3 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPW 51
M++ + +IA+A++ + P + Y LDT +G + D +
Sbjct: 1 MKKLIFLIAIALVLSACNSNSPHAKELNDLEKKYNAHIGVYALDTKSGKE-VKFNSDKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L I I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKIHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + + ++ + K LG T+ +
Sbjct: 118 MTYSDNTANNKIIKEI-----GGIKKVKQRLKGLGDKVTNPVRYE 157
>gi|38155789|gb|AAR12676.1| beta-lactamase [Staphylococcus aureus]
Length = 179
Score = 37.3 bits (84), Expect = 3.6, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET---------NKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ +++IA+A++ + S N LDT +G + D +
Sbjct: 1 MKKLILLIAIALVLSACNSTSSHAKELNNLEKKYNANIGVYALDTKSGKE-VKFNADKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L + I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKVHINKDDIVAYSPILEKYVGKDITLKALIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + + ++ + K LG T+ +
Sbjct: 118 MTYSDNTANNKIIKEI-----GGIKKVKQRLKELGDKVTNPVRYE 157
>gi|332667164|ref|YP_004449952.1| beta-lactamase [Haliscomenobacter hydrossis DSM 1100]
gi|332335978|gb|AEE53079.1| beta-lactamase [Haliscomenobacter hydrossis DSM 1100]
Length = 497
Score = 37.3 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 14/109 (12%), Positives = 27/109 (24%), Gaps = 33/109 (30%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN------KLPY-----------YTLLDTNTGHVIA 43
M+ + +++ ++ + D G VI
Sbjct: 1 MKNTFFLFVISLFCQTLFAQNLNSQIQEFDTYAAKAMAAWQMPGMAVAIVKD---GKVIF 57
Query: 44 EN-------------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ ++ AS TK MTA + + E K
Sbjct: 58 KKGYGVRELGATNAVNTQTQFSCASTTKAMTAVCMAILVDEGKVNWDDH 106
>gi|330994429|ref|ZP_08318354.1| Peptidoglycan synthase ftsI [Gluconacetobacter sp. SXCC-1]
gi|329758429|gb|EGG74948.1| Peptidoglycan synthase ftsI [Gluconacetobacter sp. SXCC-1]
Length = 674
Score = 37.3 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 39/135 (28%), Gaps = 27/135 (20%)
Query: 31 YTLLDTNTGHVI-------AENY------PDHPW--------NPASLTKLMTAYVVFSFL 69
++D +TG +I + PD + P S KL T +
Sbjct: 257 AIVMDVHTGEIITMVSLPDYDANDFGRAAPDARFNRAVTGMYEPGSTFKLQTTAMALQEG 316
Query: 70 KEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND-IAVAIAESLC 128
S + + K L ++ S+N A ++
Sbjct: 317 VAHIWD-----RFSSTPIKIGRFTISDMKSDHFDPWLTLPEVMAYSSNPAAAHIALDAGA 371
Query: 129 KTEKKFVQHMNNTSK 143
++ +++ M S+
Sbjct: 372 ARQQDWLRRMGFFSR 386
>gi|227834069|ref|YP_002835776.1| putative penicillin-binding protein 4 [Corynebacterium aurimucosum
ATCC 700975]
gi|262183445|ref|ZP_06042866.1| putative penicillin-binding protein 4 [Corynebacterium aurimucosum
ATCC 700975]
gi|227455085|gb|ACP33838.1| putative penicillin-binding protein 4 [Corynebacterium aurimucosum
ATCC 700975]
Length = 428
Score = 37.3 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKL 59
++DT T V+ E P P PAS TK+
Sbjct: 84 VIDTTTHEVLWEREPAKPLTPASATKV 110
>gi|115039|sp|P14559|BLAC_STRAL RecName: Full=Beta-lactamase; AltName: Full=Penicillinase; Flags:
Precursor
gi|153339|gb|AAA26775.1| beta-lactamase [Streptomyces albus]
Length = 314
Score = 37.3 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 30/231 (12%), Positives = 63/231 (27%), Gaps = 10/231 (4%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP-- 91
DT +G +A D + S+ K +++ V L L+ I +++ E
Sbjct: 69 YDTGSGRTVAYR-ADELFPMCSVFKTLSSAAVLRDLDRNGEFLSRRILYTQDDVEQADGA 127
Query: 92 ----SNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNL 145
+ +T++ ++ I S N A + +FV+ + + L
Sbjct: 128 GPETGKPQNLANAQLTVEELCEVSITASDNCAANLMLRELGGPAAVTRFVRSLGDRVTRL 187
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW 205
+A + + D + + +
Sbjct: 188 DRWEPELNSAEPGRVTDTTSPRAITRTYGRLVLGDALNPRDRRLLTSWLLANTTSGDRFR 247
Query: 206 AVGTFLGADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
A G KTG N + ++ +L A +
Sbjct: 248 AGLPDDWTLGDKTGAGRYGTNNDAGVTWPPGRAPIVLTVLTAKTEQDAARD 298
>gi|302523637|ref|ZP_07275979.1| predicted protein [Streptomyces sp. AA4]
gi|302432532|gb|EFL04348.1| predicted protein [Streptomyces sp. AA4]
Length = 287
Score = 37.3 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D TG + ASL KL+ A
Sbjct: 79 SVVVYDRATGTTPVSVDAHRRYTSASLVKLLIALDALD 116
>gi|261340966|ref|ZP_05968824.1| beta-lactamase [Enterobacter cancerogenus ATCC 35316]
gi|288316829|gb|EFC55767.1| beta-lactamase [Enterobacter cancerogenus ATCC 35316]
Length = 388
Score = 37.3 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D ASLTKLMT+ ++ L + L P
Sbjct: 82 DSVIRIASLTKLMTSELLVKLLDQGVVKLDDP 113
>gi|330934649|ref|XP_003304638.1| hypothetical protein PTT_17287 [Pyrenophora teres f. teres 0-1]
gi|311318653|gb|EFQ87270.1| hypothetical protein PTT_17287 [Pyrenophora teres f. teres 0-1]
Length = 569
Score = 37.3 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + AS+TK T + + L
Sbjct: 94 NGDALYRIASITKTFTILSLLYQHEAGNLSLDDM 127
>gi|312865770|ref|ZP_07725992.1| conserved hypothetical protein [Streptococcus downei F0415]
gi|311098645|gb|EFQ56867.1| conserved hypothetical protein [Streptococcus downei F0415]
Length = 432
Score = 37.3 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITIS 83
+ + ++G V A+ D P AS++KL Y V L + K + +T S
Sbjct: 205 ADSSKYSIYVKQLDSGKV-AQINADKPMYSASVSKLPLLYYVQDQLNKGKIKASQSLTYS 263
>gi|291085784|ref|ZP_06354051.2| beta-lactamase [Citrobacter youngae ATCC 29220]
gi|291069840|gb|EFE07949.1| beta-lactamase [Citrobacter youngae ATCC 29220]
Length = 407
Score = 37.3 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D AS+TKLMT+ V+ L + L P
Sbjct: 102 DSVIRIASITKLMTSEVLVKLLDQGTVKLNDP 133
>gi|84514351|ref|ZP_01001715.1| penicillin-binding protein 2 [Loktanella vestfoldensis SKA53]
gi|84511402|gb|EAQ07855.1| penicillin-binding protein 2 [Loktanella vestfoldensis SKA53]
Length = 646
Score = 37.3 bits (84), Expect = 3.7, Method: Composition-based stats.
Identities = 10/105 (9%), Positives = 26/105 (24%), Gaps = 11/105 (10%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+A + P S K++T + ++ + K
Sbjct: 314 LAAKAVQGTYPPGSTFKMVTLLAAMEA---GVITAEDTVYC-PGYADVGGTRFHCWKRGG 369
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLG 146
N + + ++ ++ M ++ LG
Sbjct: 370 HGNMNLHESVKQSCD-------VYYYDIAQRVGIEKMAEMARKLG 407
>gi|303238076|ref|ZP_07324616.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella disiens FB035-09AN]
gi|302481711|gb|EFL44766.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella disiens FB035-09AN]
Length = 437
Score = 37.3 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 11/42 (26%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
+ D + PAS K +TA L
Sbjct: 96 MVWDLTDNKQVYAFNERKHLRPASTMKCVTAITALDRLGCNY 137
>gi|118469316|ref|YP_891026.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
gi|118170603|gb|ABK71499.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
Length = 303
Score = 37.3 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 39/154 (25%), Gaps = 5/154 (3%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTA--YVVFSFLKEKKAMLTTPITISKNASE 88
+LD NTG V N + P+ AS+ KL A ++ + + ++
Sbjct: 83 AVVLDRNTGEV-VSNGSNKPFPIASVVKLFIADDLLLQESEGKTELSPADRKSLDVMLRS 141
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL--G 146
S + ++ T+ ++ L G
Sbjct: 142 SDDSAAQMFWDRLGGNAVISRIKARYGLPGTIAPYNGHWDVTQSTAADLVHYYDMLLNGG 201
Query: 147 LSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
V H+T + D
Sbjct: 202 GGLPREQADVIVDNLAHFTPSGTDGYPQRFGIPD 235
>gi|257794502|ref|ZP_05643481.1| beta-lactamase [Staphylococcus aureus A9781]
gi|295407603|ref|ZP_06817395.1| beta-lactamase [Staphylococcus aureus A8819]
gi|537338|gb|AAA26644.1| beta-lactamase [Staphylococcus aureus]
gi|257788474|gb|EEV26814.1| beta-lactamase [Staphylococcus aureus A9781]
gi|270055431|gb|ACZ58924.1| Beta-lactamase [Staphylococcus aureus]
gi|270055547|gb|ACZ59040.1| Beta-lactamase [Staphylococcus aureus]
gi|270269137|gb|ACZ66129.1| Beta-lactamase [Staphylococcus aureus]
gi|270299756|gb|ACZ68562.1| Beta-lactamase [Staphylococcus aureus]
gi|270300004|gb|ACZ68810.1| Beta-lactamase [Staphylococcus aureus]
gi|281334174|gb|ADA61258.1| Beta-lactamase [Staphylococcus aureus]
gi|281334755|gb|ADA61839.1| Beta-lactamase [Staphylococcus aureus]
gi|281334805|gb|ADA61889.1| Beta-lactamase [Staphylococcus aureus]
gi|282166004|gb|ADA80024.1| Beta-lactamase [Staphylococcus aureus]
gi|294967553|gb|EFG43590.1| beta-lactamase [Staphylococcus aureus A8819]
gi|312831081|emb|CBX35921.1| beta-lactamase (Penicillinase) [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|320139784|gb|EFW31650.1| beta-lactamase [Staphylococcus aureus subsp. aureus MRSA131]
gi|329723910|gb|EGG60436.1| beta-lactamase [Staphylococcus aureus subsp. aureus 21172]
Length = 281
Score = 37.3 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPW 51
M++ + +IA+A++ + P + Y LDT +G + D +
Sbjct: 1 MKKLIFLIAIALVLSACNSNSPHAKKLNDLEKKYNAHIGVYALDTKSGKE-VKFNSDKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L I I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQIPYN--KLNKKIHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + + ++ + K LG T+ +
Sbjct: 118 MTYSDNTANNKIIKEI-----GGIKKVKQRLKELGDKVTNPVRYE 157
>gi|114566357|ref|YP_753511.1| peptidoglycan glycosyltransferase [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337292|gb|ABI68140.1| Peptidoglycan glycosyltransferase [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 705
Score = 37.3 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 21/65 (32%)
Query: 25 TNKLPYYTLLDTNTGHVIA---------------------ENYPDHPWNPASLTKLMTAY 63
K ++D +TG ++A + + P S K+ TA
Sbjct: 242 KAKSAAAIIMDVSTGEILALASRPTFDPNDFSAYAVSNRRNYGINDSYEPGSTMKITTAA 301
Query: 64 VVFSF 68
+
Sbjct: 302 MALQE 306
>gi|281427751|ref|YP_003347954.1| beta-lactamase [Staphylococcus aureus]
gi|281307465|gb|ADA57912.1| beta-lactamase [Staphylococcus aureus]
Length = 281
Score = 37.3 bits (84), Expect = 3.8, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPW 51
M++ + +IA+A++ + P + Y LDT +G + D +
Sbjct: 1 MKKLIFLIAIALVLSACNSNSPHAKELNDLEKKYNAHIGVYALDTKSGKE-VKFNSDKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L I I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKIHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + + ++ + K LG T+ +
Sbjct: 118 MTYSDNTANNKIIKEI-----GGIKKVKQRLKELGDKVTNPVRYE 157
>gi|256420480|ref|YP_003121133.1| beta-lactamase [Chitinophaga pinensis DSM 2588]
gi|256035388|gb|ACU58932.1| Beta-lactamase [Chitinophaga pinensis DSM 2588]
Length = 295
Score = 37.3 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 36/280 (12%), Positives = 83/280 (29%), Gaps = 38/280 (13%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP--------------YYTLLDTNTGHVIAENY 46
M+ ++ ++A+ + S A+ N ++ G
Sbjct: 1 MKNRILSCSLALPFLLLSIHSSAQDNNTRQKVNEIAATARGHVGVAMMSLENGDT-MTLN 59
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKN---ASEYPPSNSTFKKGSTMT 103
+ + S+ K+ A V + + K L I I+K + P + +G+ +
Sbjct: 60 GNDHFPMQSVFKVPLAIAVLDQVDKGKLSLDQVIHITKKELLPFTWSPIREKYPEGTDLK 119
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM------NAHG 157
L L + +S N+ + + ++ LG+ + +
Sbjct: 120 LREVLAYTVSQSDNNGCDILFNLV-----GGTAYVEQYIHGLGVDSMAIKANEERMASAW 174
Query: 158 VVQHGHYTTARDMAILSW-----RIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
VQ+ ++++ L + + +K K+ A
Sbjct: 175 KVQYTNWSSPLATLQLLKGIHTGKYLSKASNDFLLKIMKETTTGPKRLRGMLPADAVVAH 234
Query: 213 ADG---MKTGFTCASGFNIVASAIQGDQSLIAVILGALDR 249
G K G T A+ + + L V+ + +
Sbjct: 235 KTGSSDTKDGLTAATNDAGIVTLP-DGSHLAIVVFVSDTK 273
>gi|300933360|ref|ZP_07148616.1| penicillin-binding protein [Corynebacterium resistens DSM 45100]
Length = 638
Score = 37.3 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 12/69 (17%), Positives = 21/69 (30%), Gaps = 24/69 (34%)
Query: 26 NKLPYYTLLDTNTGHVIA------------------------ENYPDHPWNPASLTKLMT 61
K +LD+ TG +++ + + P S+ K+MT
Sbjct: 291 AKSVSAVVLDSKTGKILSLASSDSINPNGDIEKQLKQKKVFGDRNTADSFEPGSVAKIMT 350
Query: 62 AYVVFSFLK 70
A K
Sbjct: 351 AAAAIEEKK 359
>gi|214091189|gb|ACJ63454.1| PenB class A beta-lactamase [Burkholderia cenocepacia]
Length = 312
Score = 37.3 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 39/226 (17%), Positives = 66/226 (29%), Gaps = 5/226 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT +G VI E+ + S K M + V + E+ +L + +K
Sbjct: 73 IDTASGRVI-EHRAGERFPFCSTFKAMLSAAVLAQSVERPGLLQQRVKYTKADLVNYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
S G+ MT+ + I S N A + + + + + + + L T
Sbjct: 132 SEKHVGAGMTVAALCEATIQYSDNSAANLLMKLIGGPSAVTAYARSIGDDAFRLDRWETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A + D Q+ K A
Sbjct: 192 LNTALPGDPRDTTTPAAMAASIRVLTLGDALPAAQRAQLVAWLRGNKVGDKRIRAGVPAG 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDR-NTRNKV 255
G KTG N + ++ + R + R K
Sbjct: 252 WTVGDKTGTGDYGTTNDAGVIWPTSRAPIVLAVYYTQTRADARAKD 297
>gi|85704238|ref|ZP_01035341.1| beta lactamase [Roseovarius sp. 217]
gi|85671558|gb|EAQ26416.1| beta lactamase [Roseovarius sp. 217]
Length = 287
Score = 37.3 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 34/220 (15%), Positives = 63/220 (28%), Gaps = 5/220 (2%)
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTL 104
+ P+ + AS K M V S + + L P+ I++ + + G TM+L
Sbjct: 57 HRPNERFLMASTFKAMLCGAVLSRVDKGTLALDEPLEITEQDILEYAPITESEIGKTMSL 116
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
+ S N A + + L + F++ + + L
Sbjct: 117 GELCFAALDLSDNTAANLLIDRLGGPHEVTAFLRAIGDPVSRLDRREPDLNTFTPGDPRD 176
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTC 222
T A + L + D Q+ G A K+G
Sbjct: 177 TTTPAAMASTLETLLAGDALSPQSRAQLVKWMSAGGVTGALIRASTPKGWQVADKSGSGA 236
Query: 223 ASGFNIVASAIQGDQSLIAVILGAL---DRNTRNKVSASL 259
+ + + + + D TRN +L
Sbjct: 237 YNRNIVAMVTPPDQSPYVITMFLSDADADFATRNAAVITL 276
>gi|225907438|gb|ACO36252.1| beta-lactamase Pen-B4 [Burkholderia cenocepacia]
Length = 312
Score = 37.3 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 40/226 (17%), Positives = 67/226 (29%), Gaps = 5/226 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT +G VI E+ + S K M + V + E+ +L +T +K
Sbjct: 73 IDTASGRVI-EHRAGERFPFCSTFKAMLSAAVLAQSVERPGLLQQRVTYTKADLVNYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
S G+ MT+ + I S N A + + + + + + + L T
Sbjct: 132 SEKHVGAGMTVAALCEATIQYSDNSAANLLMKLIGGPSAVTAYARSIGDDAFRLDRWETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A + D Q+ K A
Sbjct: 192 LNTALPGDPRDTTTPAAMAASIRVLTLGDALPAAQRAQLVAWLRGNKVGDKRIRAGVPAG 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDR-NTRNKV 255
G KTG N + ++ + R + R K
Sbjct: 252 WTVGDKTGTGDYGTTNDAGVIWPTSRAPIVLAVYYTQTRADARAKD 297
>gi|37931484|gb|AAP69225.1| OXA-47 [Klebsiella pneumoniae]
Length = 276
Score = 37.3 bits (84), Expect = 3.9, Method: Composition-based stats.
Identities = 25/233 (10%), Positives = 60/233 (25%), Gaps = 16/233 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDH---PWN 52
F + + +A + S + + L D +T IA+
Sbjct: 9 FAIFLIIANIIYSSASASTDISTVASQLFEGTEGCFLLYDASTNAEIAQFNKAKCAAQMA 68
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
P S K+ + + F + + I K + +++ + + ++
Sbjct: 69 PDSTFKIALSLMAFDAEIIDQKTIFKWDKIPKGMEIWNSNHTPKTWMQFSVVWVSQEITQ 128
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-----NAHGVVQHGHYTTA 167
N I + + + N + + + ++
Sbjct: 129 KIGLNKIKNYLKDFDYGNQDFSGDKERNNGLTEAWLESSLKISPEEQIQFLRKIINHNLP 188
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+ + I + Q + + N G F G K+G
Sbjct: 189 VRNSAIENTIDNMYLQDLENSTKLYGKTGAGFTANRTLQNGWFEGFIISKSGH 241
>gi|291484447|dbj|BAI85522.1| penicillin-binding protein [Bacillus subtilis subsp. natto
BEST195]
Length = 501
Score = 36.9 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 22/77 (28%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY-------TLLD---------------TNT 38
++ ++ ++ + +++++ A + L D T
Sbjct: 15 IKLYVAVLLLFVIASVPYMHQAALAAEKQDALSGQIDKILADHPALEGAMAGITVRSAET 74
Query: 39 GHVIAENYPDHPWNPAS 55
G V+ E+ D PAS
Sbjct: 75 GAVLYEHSGDTRMRPAS 91
>gi|223044446|ref|ZP_03614478.1| beta-lactamase [Staphylococcus capitis SK14]
gi|222442175|gb|EEE48288.1| beta-lactamase [Staphylococcus capitis SK14]
Length = 281
Score = 36.9 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPW 51
M++ + +IA+A++ + P + Y LDT +G + D +
Sbjct: 1 MKKLIFLIAIALVLSACNSNSPHAKELNDLEKKYNAHIGVYALDTKSGKE-VKFNSDKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L I I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKIHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + + ++ + K LG T+ +
Sbjct: 118 MTYSDNTANNKIIKEI-----GGIKKVKQRLKELGDKVTNPVRYE 157
>gi|330933568|ref|XP_003304219.1| hypothetical protein PTT_16715 [Pyrenophora teres f. teres 0-1]
gi|311319302|gb|EFQ87676.1| hypothetical protein PTT_16715 [Pyrenophora teres f. teres 0-1]
Length = 402
Score = 36.9 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ AS TKLMTA ++ + L P+
Sbjct: 53 NTVMWIASCTKLMTAICAMQLVERGQLRLDDPVY 86
>gi|260596740|ref|YP_003209311.1| beta-lactam binding protein AmpH [Cronobacter turicensis z3032]
gi|260215917|emb|CBA28489.1| Penicillin-binding protein ampH [Cronobacter turicensis z3032]
Length = 352
Score = 36.9 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D ASLTKLMT+ ++ L + L P
Sbjct: 47 DSVIRIASLTKLMTSEMLVKMLDQGVVKLDDP 78
>gi|149200951|ref|ZP_01877926.1| penicillin-binding protein 2 [Roseovarius sp. TM1035]
gi|149145284|gb|EDM33310.1| penicillin-binding protein 2 [Roseovarius sp. TM1035]
Length = 647
Score = 36.9 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 9/89 (10%), Positives = 18/89 (20%), Gaps = 4/89 (4%)
Query: 51 WNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL 110
+ P S K++TA L + E K +
Sbjct: 323 YPPGSTFKMVTALAALEA---GDVSLQDTVYC-PGHLEISGRRFHCWKRGGHGNMDLHLS 378
Query: 111 LIVKSANDIAVAIAESLCKTEKKFVQHMN 139
L + + + +
Sbjct: 379 LRESCDVYYYELALRTGIENISAMAERLG 407
>gi|271961641|ref|YP_003335837.1| alkaline D-peptidase [Streptosporangium roseum DSM 43021]
gi|270504816|gb|ACZ83094.1| alkaline D-peptidase [Streptosporangium roseum DSM 43021]
Length = 392
Score = 36.9 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 22/126 (17%), Positives = 38/126 (30%), Gaps = 4/126 (3%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
DT TG + P + S TK TA VV E+K L +
Sbjct: 69 SAGAADTETGR---KRRPHERFRIGSATKAFTATVVLQLAAERKLSLEDTVE-EWLPGLV 124
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+ K + L N + + A + E ++ ++ +GL+
Sbjct: 125 KGNGYDGSKITIRQLLNHSSGIFNYGNDKAFFATGQGAAWFEHRYDEYTPEQLVKIGLAN 184
Query: 150 THFMNA 155
+
Sbjct: 185 PPYFEP 190
>gi|297193337|ref|ZP_06910735.1| beta-lactamase [Streptomyces pristinaespiralis ATCC 25486]
gi|197718346|gb|EDY62254.1| beta-lactamase [Streptomyces pristinaespiralis ATCC 25486]
Length = 460
Score = 36.9 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + S+TK TA +V E L P
Sbjct: 57 DADTQYRIGSITKTFTAVLVMRLRDEGLLGLDDP 90
>gi|159037056|ref|YP_001536309.1| Beta-lactamase [Salinispora arenicola CNS-205]
gi|157915891|gb|ABV97318.1| Beta-lactamase [Salinispora arenicola CNS-205]
Length = 300
Score = 36.9 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 37/225 (16%), Positives = 59/225 (26%), Gaps = 6/225 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT TG D + S K + A V A L + S +
Sbjct: 62 IDTGTGRT-VRYQADERFAYGSTFKALAAAEVLDETT--DAELEQVVRYSADDLVDYSPI 118
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ MTL + S N + E L E+ + K +
Sbjct: 119 TEQYVAEGMTLRAIADAAVRYSDNTAGNLLLEHLGGPERFEKELKGIGDKVTDAARYETA 178
Query: 154 NAHGVV-QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT-NWAVGTFL 211
+TAR + D I ++G A
Sbjct: 179 LNEATPGDRRDTSTARALTEDLREYAVDDALEPADRDILNAWLRGNTTGGELIRAGVPDG 238
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDRNTRNKV 255
G KTG N +A D+ ++ +L + D +
Sbjct: 239 WVVGDKTGSAGYGTRNDIAVIWPPDRAPIVLAVLSSRDEQDASYD 283
>gi|29566662|ref|NP_818228.1| gp169 [Mycobacterium phage Bxz1]
gi|203459023|ref|YP_002224179.1| gp168 [Mycobacterium phage ScottMcG]
gi|203460669|ref|YP_002224403.1| gp171 [Mycobacterium phage Spud]
gi|204305807|ref|YP_002224624.1| gp169 [Mycobacterium phage Cali]
gi|29425387|gb|AAN16811.1| gp169 [Mycobacterium phage Bxz1]
gi|197312250|gb|ACH62606.1| gp171 [Mycobacterium phage Spud]
gi|197312470|gb|ACH62825.1| gp168 [Mycobacterium phage ScottMcG]
gi|197312780|gb|ACH63133.1| gp169 [Mycobacterium phage Cali]
gi|255928054|gb|ACU41673.1| gp166 [Mycobacterium phage LRRHood]
Length = 358
Score = 36.9 bits (83), Expect = 4.0, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
D + AS+TK +TA + + + K L
Sbjct: 57 DAKFRAASVTKTLTAMAILREVDKGKISLDD 87
>gi|300780112|ref|ZP_07089968.1| penicillin binding protein transpeptidase domain protein
[Corynebacterium genitalium ATCC 33030]
gi|300534222|gb|EFK55281.1| penicillin binding protein transpeptidase domain protein
[Corynebacterium genitalium ATCC 33030]
Length = 484
Score = 36.9 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 40/126 (31%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
++AMA + P + + ++ + G + P S+ K++T
Sbjct: 167 VLAMASNPSYDPNSIVNPDTADSAWQAVNEDPGKPLLNQAAQEQLPPGSIFKIITTAAGL 226
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
+ LT I+ +E +N K + +L S N V +A
Sbjct: 227 RAGYTPDSQLTAEAAITLPGTEVQLTNYGGKACGGGGGETSLTQAFTLSCNTAFVEMATE 286
Query: 127 LCKTEK 132
+
Sbjct: 287 IGDEPM 292
>gi|109393362|ref|YP_656160.1| gp169 [Mycobacterium phage Catera]
gi|203457498|ref|YP_002224844.1| gp168 [Mycobacterium phage Rizal]
gi|91981184|gb|ABE67899.1| gp169 [Mycobacterium phage Catera]
gi|197312026|gb|ACH62383.1| gp168 [Mycobacterium phage Rizal]
Length = 358
Score = 36.9 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
D + AS+TK +TA + + + K L
Sbjct: 57 DAKFRAASVTKTLTAMAILREVDKGKISLDD 87
>gi|295822191|gb|ADG36749.1| extended-spectrum class A beta-lactamase [Rahnella sp. 34-Carrot]
gi|295822227|gb|ADG36767.1| extended-spectrum class A beta-lactamase [Rahnella sp. 56-Salad]
Length = 218
Score = 36.9 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 58/203 (28%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + + +L ++++K+ + + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKQSETQTELLNRRVSLTKSDLVNYNPITEKHLDTGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + S N + E L +K ++ + + + + L + A
Sbjct: 65 VGELAAAALQYSDNTAMNKLIEQLGGPQKVTEYARTLGDKTFRLDRTEPTLNTAIPGDDR 124
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+ L Q+ + A G KTG
Sbjct: 125 DTTSPRAMALSLQHVTLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWVVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ LI +
Sbjct: 185 DYGTTNDIAVIWPDNKAPLILIT 207
>gi|288801383|ref|ZP_06406837.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella sp. oral taxon 299 str. F0039]
gi|288331766|gb|EFC70250.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella sp. oral taxon 299 str. F0039]
Length = 423
Score = 36.9 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 32 TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D I + PAS KL+TA
Sbjct: 82 MVYDITADSTIFQFNEKQLLRPASTMKLITAITALDK 118
>gi|226360341|ref|YP_002778119.1| hypothetical protein ROP_09270 [Rhodococcus opacus B4]
gi|226238826|dbj|BAH49174.1| hypothetical protein [Rhodococcus opacus B4]
Length = 271
Score = 36.9 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNP-ASLTKLMTAYVVFSFLKEKKAMLTTP 79
+L + G VI E P AS+TKL+ AY V +E L P
Sbjct: 11 PVDNAAAVVLSRDDG-VIGEYGDQQRVFPLASVTKLLCAYAVLVATEEGAVELDQP 65
>gi|21222416|ref|NP_628195.1| secreted penicillin-binding protein [Streptomyces coelicolor A3(2)]
gi|256786511|ref|ZP_05524942.1| secreted penicillin-binding protein [Streptomyces lividans TK24]
gi|289770402|ref|ZP_06529780.1| secreted penicillin-binding protein [Streptomyces lividans TK24]
gi|13122177|emb|CAC32353.1| putative secreted penicillin-binding protein [Streptomyces
coelicolor A3(2)]
gi|289700601|gb|EFD68030.1| secreted penicillin-binding protein [Streptomyces lividans TK24]
Length = 495
Score = 36.9 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 7/124 (5%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD +A + P S K++TA T +S +
Sbjct: 199 LDKKKNKPLANRALRETYPPGSTFKILTAAAALEHGIVTDVDARTD-AVSPYPLPQSTNK 257
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ G + ++K + S N++ L K M T++ G + +
Sbjct: 258 IGSEAGDAVCNKASMKTAMQHSCNNV------FLDAASKLGQDKMRETAEKFGFNEDVYS 311
Query: 154 NAHG 157
+ G
Sbjct: 312 DDFG 315
>gi|266619200|ref|ZP_06112135.1| beta-lactamase [Clostridium hathewayi DSM 13479]
gi|288869291|gb|EFD01590.1| beta-lactamase [Clostridium hathewayi DSM 13479]
Length = 281
Score = 36.9 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 12/207 (5%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNAS-EYPPSNSTFK 97
G++I D P+ AS K +F +++ KA L + + + + +
Sbjct: 31 GNII-AIGADEPFETASTIKTYILACLFDQVEKGKASLEDMVEYKEEHTVDGSGVLCALE 89
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH- 156
G+ + + +A L+I+ S N + + L + +N + LG T N
Sbjct: 90 PGAVLRVKDAATLMIIVSDNVATNMMIDYL------GLDTINACIRGLGCRDTVLYNPLH 143
Query: 157 -GVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADG 215
+T RD A + R+ K + Y + + D
Sbjct: 144 FERYDKLGTSTPRDYASIFTRLAAGTLISPESDAKMLEIFKKQHYNSMITKDFPAVYMDS 203
Query: 216 MKT--GFTCASGFNIVASAIQGDQSLI 240
T + + +A + D +I
Sbjct: 204 DNTDDVMVTVASKSGSMNACRNDGGII 230
>gi|221209528|ref|ZP_03582509.1| beta-lactamase [Burkholderia multivorans CGD1]
gi|221170216|gb|EEE02682.1| beta-lactamase [Burkholderia multivorans CGD1]
Length = 302
Score = 36.9 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 61/238 (25%), Gaps = 8/238 (3%)
Query: 10 MAMLSNIFPFLSIAETNKLPY---YTLLDTNTGH-VIAENYPDHPWNPASLTKLMTAYVV 65
A P A +DT TG + D + S K M A V
Sbjct: 36 AAFPVGASPASFAALERAAGGRLGVCAIDTATGRRALY--RADERFPFCSTFKAMLAAAV 93
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+ +L +T ++ + + MT+ I S N A + +
Sbjct: 94 LAQSVAHPGLLQQRVTYGRSDLVNYSPVTERHVDTGMTVAELCAATIQYSDNTAANELMK 153
Query: 126 SLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
+ + + + + + L T A T A A L + D
Sbjct: 154 RIGGPAAVTAYARSIGDDTFRLDRWETELNTALPGDLRDTTTPAAMAASLRVLVLGDALP 213
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIA 241
Q+ K A G KTG N ++ I
Sbjct: 214 PAQRAQLIEWLRGNKVGDKRIRAGVPTGWRVGDKTGTGDYGTTNDAGVLWPPSRAPIV 271
>gi|163941173|ref|YP_001646057.1| D-alanyl-D-alanine carboxypeptidase [Bacillus weihenstephanensis
KBAB4]
gi|163863370|gb|ABY44429.1| D-alanyl-D-alanine carboxypeptidase [Bacillus weihenstephanensis
KBAB4]
Length = 369
Score = 36.9 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 22/172 (12%), Positives = 45/172 (26%), Gaps = 4/172 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
L+ V+ PD AS KL+ A + E K ++ +S N
Sbjct: 51 SALLI-KRNDKVVYSVNPDVVLPVASTMKLIVALEYTKQVTEGKIDPSS--FVSINDVNR 107
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
T + K + +A+ + K L
Sbjct: 108 YYVPGTDGGAQDRWQNYLQKKEKITEGAVSLEEVAKGMVKFSSNANTEYLMEVLGLDNIN 167
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ + + H + + + + + K E+ ++Y
Sbjct: 168 RNL-QSLALPAHQPLFPIVSSLYIPGYLHKELHVPKYKIEKKLKEMSQEQYR 218
>gi|91786967|ref|YP_547919.1| peptidoglycan synthetase FtsI [Polaromonas sp. JS666]
gi|91696192|gb|ABE43021.1| peptidoglycan synthetase FtsI [Polaromonas sp. JS666]
Length = 577
Score = 36.9 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 24/172 (13%), Positives = 37/172 (21%), Gaps = 22/172 (12%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENY-----PDHP----------------WNPASLTK 58
A K +LD TG V+A PD + P S K
Sbjct: 244 AVTARKAKAGSVVVLDAITGEVLALANYPSYVPDKRQNLTGEQLRNRALTDTFEPGSTMK 303
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+T + + K L + + + T G+ K V +
Sbjct: 304 PITVAMALEAGRVKPQTLVETGP-GRFSIGGFTISDTHNYGTLTVEGVIQKSSNVGALKI 362
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ T + G T A
Sbjct: 363 AQKMSPHEMWDTYTALGYGQKPQIQFPGAVTGRLRPWKSWRPVEQATMAYGY 414
>gi|83747061|ref|ZP_00944106.1| Beta-lactamase [Ralstonia solanacearum UW551]
gi|207738499|ref|YP_002256892.1| oxacillin hydrolase (class-d beta-lactamase) protein [Ralstonia
solanacearum IPO1609]
gi|83726338|gb|EAP73471.1| Beta-lactamase [Ralstonia solanacearum UW551]
gi|206591867|emb|CAQ58773.1| oxacillin hydrolase (class-d beta-lactamase) protein [Ralstonia
solanacearum IPO1609]
Length = 272
Score = 36.9 bits (83), Expect = 4.1, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 32/122 (26%), Gaps = 1/122 (0%)
Query: 32 TLLDTNTGH-VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ D +G + E PAS K+ A + + K +
Sbjct: 28 IVADAASGKPIRYEGQCGERVTPASTFKIALAVMGYDAGFLKDQHAPVLSFRQGDPDWGG 87
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
S+ + + + A A + + + + +N GL +
Sbjct: 88 ADWHRPTDPSSWIQYSVVWYSQRITHALGADAFQSYVRRFGYGNMDVSGDAGRNNGLDRS 147
Query: 151 HF 152
Sbjct: 148 WI 149
>gi|229086134|ref|ZP_04218354.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
gi|228697193|gb|EEL49958.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-44]
Length = 328
Score = 36.9 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 16/172 (9%), Positives = 43/172 (25%), Gaps = 4/172 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
L+ V+ P+ AS KL+ A+ + + + + +S +
Sbjct: 10 SALLI-KRNDKVVYSVNPNVVLPVASTMKLIVAFEFTKQVVDGRIDPNS--YVSIDDVNR 66
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+ ++ + +A+ + K L
Sbjct: 67 YYVPNADGGAQDRWQKYLIRTDKIDGNAVPLEEVAKGMVKFSSNANTEYLMDRLGLDHIN 126
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ N + H + + + + E+ ++Y
Sbjct: 127 QNLQNL-SLPSHQPLFPIVSSLYIPGYLHKELHIPKDKLEKTLKEMPLEEYR 177
>gi|225867629|ref|YP_002743577.1| hypothetical protein SZO_00120 [Streptococcus equi subsp.
zooepidemicus]
gi|225700905|emb|CAW97573.1| putative exported protein [Streptococcus equi subsp. zooepidemicus]
Length = 428
Score = 36.9 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 22/204 (10%), Positives = 44/204 (21%), Gaps = 13/204 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAM-------LTTPITISKNASEYPPSNSTFKK 98
D AS++KL T Y V LK + + +
Sbjct: 222 NADKQMYAASISKLATLYSVQKKLKSGSLSEGKSLKYIDEVNHFYGDYDPTGSGKISKTA 281
Query: 99 G-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+ LK + +S N + LC + Q +
Sbjct: 282 DKKDYNVMELLKAVSQQSDNVATNILGYYLCNQYNQAFQSEIRALAGVDWDM-----EKR 336
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++ + + + + + + + +
Sbjct: 337 LLSSHAAANLMEAIYYQKGQIISYLSQTAFDDQRISKNISVPVAHKIGDAYDYKHDVAIV 396
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
G A D + IA
Sbjct: 397 YGDNPFILSVFTDKASYDDITAIA 420
>gi|308387702|pdb|2WUQ|A Chain A, Crystal Structure Of Blab Protein From Streptomyces
Cacaoi
gi|308387703|pdb|2WUQ|B Chain B, Crystal Structure Of Blab Protein From Streptomyces
Cacaoi
Length = 318
Score = 36.9 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ + D TG + PD ASL KL A ++ + I ++
Sbjct: 23 SFLVRDLYTGEEL-GIDPDTELPTASLVKLPLALATLERIRLGEVDGAQQIEVAPGRITT 81
Query: 90 PPS 92
P
Sbjct: 82 PGP 84
>gi|281416086|ref|YP_003347822.1| gp160 [Mycobacterium phage ET08]
gi|255927765|gb|ACU41386.1| gp160 [Mycobacterium phage ET08]
Length = 358
Score = 36.9 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
D + AS+TK +TA + + + K L
Sbjct: 57 DAKFRAASVTKTLTAMAILREVDKGKISLDD 87
>gi|581627|emb|CAA45315.1| ORF 2 [Streptomyces cacaoi]
Length = 312
Score = 36.9 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ + D TG + PD ASL KL A ++ + I ++
Sbjct: 23 SFLVRDLYTGEEL-GIDPDTELPTASLVKLPLALATLERIRLGEVDGAQQIEVAPGRITT 81
Query: 90 PPS 92
P
Sbjct: 82 PGP 84
>gi|461628|sp|P33652|BLAB_STRCI RecName: Full=Beta-lactamase regulatory protein BlaB
gi|216999|dbj|BAA00774.1| regulatory protein for beta-lactamase [Streptomyces cacaoi]
Length = 312
Score = 36.9 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ + D TG + PD ASL KL A ++ + I ++
Sbjct: 23 SFLVRDLYTGEEL-GIDPDTELPTASLVKLPLALATLERIRLGEVDGAQQIEVAPGRITT 81
Query: 90 PPS 92
P
Sbjct: 82 PGP 84
>gi|325578455|ref|ZP_08148590.1| D-alanyl-D-alanine carboxypeptidase DacB [Haemophilus
parainfluenzae ATCC 33392]
gi|325160191|gb|EGC72320.1| D-alanyl-D-alanine carboxypeptidase DacB [Haemophilus
parainfluenzae ATCC 33392]
Length = 479
Score = 36.9 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 6/65 (9%)
Query: 7 IIAMAMLSNIFPFLSIA------ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLM 60
I + + +++A + N +IA+ PAS K+
Sbjct: 15 FITLGFSFSSMAEVNVASITQYLPEGASASIIAKNLNKDQIIADYNGSTFMLPASTQKVF 74
Query: 61 TAYVV 65
TA
Sbjct: 75 TAVAA 79
>gi|240949665|ref|ZP_04754000.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Actinobacillus
minor NM305]
gi|240295923|gb|EER46599.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Actinobacillus
minor NM305]
Length = 479
Score = 36.9 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ + + +T +I ++ D PAS K+ TA
Sbjct: 37 PSGTSATFIAKNLDTNQIITQHQSDIFMLPASTQKVFTALAA 78
>gi|193212234|ref|YP_001998187.1| Beta-lactamase [Chlorobaculum parvum NCIB 8327]
gi|193085711|gb|ACF10987.1| Beta-lactamase [Chlorobaculum parvum NCIB 8327]
Length = 262
Score = 36.9 bits (83), Expect = 4.2, Method: Composition-based stats.
Identities = 17/238 (7%), Positives = 49/238 (20%), Gaps = 31/238 (13%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAETNKLP----YYTLLD-TNTGHVIAENY--PDHPWNPA 54
+ F++ +A+ + ++ + G++ N + ++ A
Sbjct: 7 KLFILFLALLWSLPAVAEDKVLAGLFSQQRLNGTIVISSLHNGNIFIHNDLRANQRFSTA 66
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S K+M + K + P + + + + +
Sbjct: 67 STFKIMNTLIALEE---KAISEKDEVLKWDGHIYDFPDWNHDQTLESAFKVSCVWCFQEL 123
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
+ A + + L + + + L
Sbjct: 124 ARRVGAEK------------YRSYLRKTAYGELREPFDETTFWLDGSLQISAIEQVNFLK 171
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASA 232
+ + T KTG+ +
Sbjct: 172 KVYL---------RTLPFSTHSYETLRQVMLVEQTPSYTMWAKTGWATRVNPQVGWYV 220
>gi|295822197|gb|ADG36752.1| extended-spectrum class A beta-lactamase [Rahnella sp. 348-Celery]
Length = 218
Score = 36.9 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + + +L ++++K+ + + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKQSETQTELLNRRVSLTKSDLVNYNPITEKHLDTGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + S N + E L K ++ + + + + L + A
Sbjct: 65 VGELAAAALQYSDNTAMNKLIEQLGGPRKVTEYARTLGDKTFRLDRTEPTLNTAIPGDDR 124
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+ L Q+ + A G KTG
Sbjct: 125 DTTSPRAMALSLQHVTLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWVVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ LI +
Sbjct: 185 DYGTTNDIAVIWPDNKAPLILIT 207
>gi|158334994|ref|YP_001516166.1| D-alanyl-D-alanine carboxypeptidase [Acaryochloris marina
MBIC11017]
gi|158305235|gb|ABW26852.1| D-alanyl-D-alanine carboxypeptidase [Acaryochloris marina
MBIC11017]
Length = 488
Score = 36.9 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVF 66
+ + PAS TK+MT
Sbjct: 67 LYTKDAQRYFLPASTTKVMTTAAAL 91
>gi|194290819|ref|YP_002006726.1| division-specific transpeptidase, penicillin-binding protein 3
[Cupriavidus taiwanensis LMG 19424]
gi|193224654|emb|CAQ70665.1| division-specific transpeptidase, penicillin-binding protein 3
[Cupriavidus taiwanensis LMG 19424]
Length = 599
Score = 36.9 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 20/168 (11%), Positives = 42/168 (25%), Gaps = 25/168 (14%)
Query: 25 TNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTKLMTAY 63
K +LD TG V+A P+ + P S+ K +T
Sbjct: 266 KAKAASAVVLDAQTGEVLALANWPTYNPNDRTRLSGEQLRNRVLTDTFEPGSMMKPITVA 325
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ + +T I + + + + +T+ ++ IA+ +
Sbjct: 326 LALQLKR---VSPSTVIATTGKYNFEGATITDTHNYGALTVTGVIQKSSNIGTTKIAMMM 382
Query: 124 -AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ + G A T +
Sbjct: 383 KPQEMWDMYTSIGLGQAPKIGFPGAVAGRVRPYKSWRPIEQATMSYGY 430
>gi|326440342|ref|ZP_08215076.1| putative penicillin-binding protein [Streptomyces clavuligerus ATCC
27064]
Length = 482
Score = 36.9 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 7/130 (5%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
I + + + +IA + + L D + + P P S KL+ A
Sbjct: 166 ILSLVSTPSYDPSAIAGMDGADAWQALLADED--KPMVNRAIRQPLPPGSTFKLVVAAAA 223
Query: 66 FSFLKEKKAMLTT---PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ T + P++ ++ A++ +AV
Sbjct: 224 LEEGRYGSVDEPTDSPMPYVLPGTVRELPNDIASAPCENASIRTAMRWSCNNVFAKLAVD 283
Query: 123 IAESLCKTEK 132
+ + +
Sbjct: 284 LGQDTVRAMA 293
>gi|294811924|ref|ZP_06770567.1| Putative penicillin-binding protein [Streptomyces clavuligerus ATCC
27064]
gi|294324523|gb|EFG06166.1| Putative penicillin-binding protein [Streptomyces clavuligerus ATCC
27064]
Length = 502
Score = 36.9 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 7/130 (5%)
Query: 8 IAMAMLSNIFPFLSIAETNKLPYY--TLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
I + + + +IA + + L D + + P P S KL+ A
Sbjct: 186 ILSLVSTPSYDPSAIAGMDGADAWQALLADED--KPMVNRAIRQPLPPGSTFKLVVAAAA 243
Query: 66 FSFLKEKKAMLTT---PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
+ T + P++ ++ A++ +AV
Sbjct: 244 LEEGRYGSVDEPTDSPMPYVLPGTVRELPNDIASAPCENASIRTAMRWSCNNVFAKLAVD 303
Query: 123 IAESLCKTEK 132
+ + +
Sbjct: 304 LGQDTVRAMA 313
>gi|270269077|gb|ACZ66069.1| Beta-lactamase [Staphylococcus aureus]
Length = 281
Score = 36.9 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPW 51
M++ + +IA+A++ + P + Y LDT +G + D +
Sbjct: 1 MKKLIFLIAIALVLSACNSNSPHAKELNDLEKKYNAHIGVYALDTKSGKE-VKFNSDKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L I I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKIHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + + ++ + K LG T+ +
Sbjct: 118 MTYSDNTANNKIIKEI-----GGIKKVKQRLKGLGDKVTNPVRYE 157
>gi|239813920|ref|YP_002942830.1| peptidoglycan glycosyltransferase [Variovorax paradoxus S110]
gi|239800497|gb|ACS17564.1| Peptidoglycan glycosyltransferase [Variovorax paradoxus S110]
Length = 582
Score = 36.9 bits (83), Expect = 4.3, Method: Composition-based stats.
Identities = 25/174 (14%), Positives = 38/174 (21%), Gaps = 26/174 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIAENY-----PDHP----------------WNPASLTK 58
A K +LD TG V+A PD + P S K
Sbjct: 249 AVTARRAKAGSVVVLDAVTGEVLALANYPSYVPDKRQNLTGEQLRNRALTDTFEPGSTMK 308
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS--NSTFKKGSTMTLDNALKLLIVKSA 116
+T + + +T I S + + T G+ K V +
Sbjct: 309 PITVAMALEA---GRVKPSTLIETSPGRFQLGGFTISDTHNYGTLTVEGVIQKSSNVGAL 365
Query: 117 NDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+ T + G T A
Sbjct: 366 KIAQKMTPHEMWDTYTALGYGQKPQIQFPGAVTGRLRPWKTWKPVEQATMAYGY 419
>gi|159043145|ref|YP_001531939.1| division-specific transpeptidase [Dinoroseobacter shibae DFL 12]
gi|157910905|gb|ABV92338.1| division-specific transpeptidase [Dinoroseobacter shibae DFL 12]
Length = 647
Score = 36.9 bits (83), Expect = 4.4, Method: Composition-based stats.
Identities = 9/98 (9%), Positives = 20/98 (20%), Gaps = 4/98 (4%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+A+ + P S K++TA + + K
Sbjct: 314 LADKTVQGTYPPGSTFKMLTALAALEA---GVIDPGERVWC-PGHYKLGTRRFHCWKRGG 369
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
N + L + + +
Sbjct: 370 HGWMNLVDSLRESCDVYYYDISQKVGVDKIAEMARRFG 407
>gi|302383613|ref|YP_003819436.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Brevundimonas subvibrioides ATCC 15264]
gi|302194241|gb|ADL01813.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Brevundimonas subvibrioides ATCC 15264]
Length = 506
Score = 36.9 bits (83), Expect = 4.4, Method: Composition-based stats.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVF 66
G V+ + D ++PAS TK+ T F
Sbjct: 67 GQVLVDIRADDRFSPASNTKIFTTAAAF 94
>gi|146340992|ref|YP_001206040.1| putative beta-lactamase [Bradyrhizobium sp. ORS278]
gi|146193798|emb|CAL77815.1| putative Beta-lactamase [Bradyrhizobium sp. ORS278]
Length = 285
Score = 36.9 bits (83), Expect = 4.4, Method: Composition-based stats.
Identities = 38/254 (14%), Positives = 76/254 (29%), Gaps = 13/254 (5%)
Query: 2 RQFLVIIAMAMLSNIFPFLSIAET----NKLPYY-----TLLDTNTGHVIAENYPDHPWN 52
R+ + +A+A L + + + LLDT +G ++ + D +
Sbjct: 3 RRQVFPLALAPLFVKPALAADFQETIAGIEADSAGRLGVALLDTASGA-LSGHRLDERFP 61
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISK-NASEYPPSNSTFKKGSTMTLDNALKLL 111
S K + A + + + L+ + I++ + Y P S +++ +
Sbjct: 62 MCSTFKALLAAAILTKVDAGAEQLSRRLPITQGDILSYAPVTKLHVGTSGLSIGELCEAT 121
Query: 112 IVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+ S N A + +L + + + L + T A
Sbjct: 122 VTLSDNTAANLLLATLDGPAGLTRATRGFGDAITRLDRIEPALNESVPDDPRDTTTPAAM 181
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIV 229
L+ + + G I K A G KTG N V
Sbjct: 182 AQTLAKLTTGNALSTSSRDVLNGWLIGCKTGAARLRAGLPASWRVGDKTGSGENGSSNDV 241
Query: 230 ASAIQGDQSLIAVI 243
A ++ + V
Sbjct: 242 AVIWPAGRAPVIVT 255
>gi|24209729|gb|AAN41430.1| beta-lactamase [uncultured bacterium]
gi|29568945|gb|AAO84013.1| blaOXA-1-like [Salmonella enterica subsp. enterica]
gi|34014743|gb|AAQ56187.1| oxacillinase [Salmonella enterica subsp. enterica serovar Typhi]
Length = 276
Score = 36.9 bits (83), Expect = 4.4, Method: Composition-based stats.
Identities = 25/233 (10%), Positives = 60/233 (25%), Gaps = 16/233 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDH---PWN 52
F + + +A + S + + L D +T IA+
Sbjct: 9 FAIFLIIANIIYSSASASTDISTVASQLFEGTEGCFLLYDASTNAEIAQFNKAKCAAQMA 68
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
P S K+ + + F + + I K + +++ + + ++
Sbjct: 69 PDSTFKIALSLMAFDAEIIDQKTIFKWDKIPKGMEIWNSNHTPKTWMQFSVVWVSQEITQ 128
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-----NAHGVVQHGHYTTA 167
N I + + + N + + + ++
Sbjct: 129 KIGLNKIKNYLKDFDYGNQDFSGDKERNNGLTEAWLESSLKISPEEQIQFLRKIINHNLP 188
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+ + I + Q + + N G F G K+G
Sbjct: 189 VRNSAIENTIDNMYLQDLENSTKLYGKTGAGFTANRTLQNGWFEGFIISKSGH 241
>gi|16078896|ref|NP_389717.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
subtilis str. 168]
gi|221309727|ref|ZP_03591574.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
[Bacillus subtilis subsp. subtilis str. 168]
gi|221314048|ref|ZP_03595853.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
[Bacillus subtilis subsp. subtilis str. NCIB 3610]
gi|221318970|ref|ZP_03600264.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
[Bacillus subtilis subsp. subtilis str. JH642]
gi|221323244|ref|ZP_03604538.1| penicillin-binding protein (D-alanyl-D-alanine carboxypeptidase)
[Bacillus subtilis subsp. subtilis str. SMY]
gi|730277|sp|P39844|DACC_BACSU RecName: Full=D-alanyl-D-alanine carboxypeptidase dacC;
Short=DD-carboxypeptidase; Short=DD-peptidase; AltName:
Full=Penicillin-binding protein 4a; Short=PBP-4a;
Flags: Precursor
gi|509467|emb|CAA84366.1| putative penicillin binding protein [Bacillus subtilis subsp.
subtilis str. 168]
gi|2634218|emb|CAB13718.1| D-alanyl-D-alanine carboxypeptidase [Bacillus subtilis subsp.
subtilis str. 168]
Length = 491
Score = 36.9 bits (83), Expect = 4.4, Method: Composition-based stats.
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 22/77 (28%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY-------TLLD---------------TNT 38
++ ++ ++ + +++++ A + L D T
Sbjct: 5 IKLYVAVLLLFVVASVPYMHQAALAAEKQDALSGQIDKILADHPALEGAMAGITVRSAET 64
Query: 39 GHVIAENYPDHPWNPAS 55
G V+ E+ D PAS
Sbjct: 65 GAVLYEHSGDTRMRPAS 81
>gi|291298908|ref|YP_003510186.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Stackebrandtia
nassauensis DSM 44728]
gi|290568128|gb|ADD41093.1| D-alanyl-D-alaninecarboxypeptidase/
D-alanyl-D-alanine-endopeptidase [Stackebrandtia
nassauensis DSM 44728]
Length = 521
Score = 36.9 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + I ++ + PAS K++T+
Sbjct: 55 GVVVAEAEGNKTIYDHNGNMRAIPASNNKILTSAAAMDA 93
>gi|222153540|ref|YP_002562717.1| penicillin binding protein 2x [Streptococcus uberis 0140J]
gi|222114353|emb|CAR43075.1| putative penicillin binding protein 2x [Streptococcus uberis 0140J]
Length = 750
Score = 36.9 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 13/136 (9%), Positives = 35/136 (25%), Gaps = 26/136 (19%)
Query: 29 PYYTLLDTNTGHVIA-----ENYPDHP------------------WNPASLTKLMTAYVV 65
TL++ TG ++A D + P S K+MT
Sbjct: 290 SSATLINAKTGEILATSQRPSYNADTLEGLNNKNYNWKSALYQTNFEPGSTMKVMTLASA 349
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+ + + + + + ++ + S +
Sbjct: 350 ID---DGVFKPNDVYSNANGITIADATIQDWSINEGVSTGQYMTYAQGFSYSSNVGMTKL 406
Query: 126 SLCKTEKKFVQHMNNT 141
+K++ +++
Sbjct: 407 EQKMGNQKWLHYLSKF 422
>gi|160891415|ref|ZP_02072418.1| hypothetical protein BACUNI_03865 [Bacteroides uniformis ATCC 8492]
gi|270295454|ref|ZP_06201655.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|156858822|gb|EDO52253.1| hypothetical protein BACUNI_03865 [Bacteroides uniformis ATCC 8492]
gi|270274701|gb|EFA20562.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 712
Score = 36.9 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 34/130 (26%), Gaps = 21/130 (16%)
Query: 31 YTLLDTNTGHV-------------IAENYPDHP---WNPASLTKLMTAYVVFSFLKEKKA 74
L++ TG V E + P S K + V + K
Sbjct: 270 AVLMEVATGEVKAIVNMMKAGDGNYYEMNSNAISDMLEPGSTFKTASIMVALE---DGKI 326
Query: 75 MLTTPITISKNASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
T + S + ++L V S ++ I + +
Sbjct: 327 TPDTEVDTGNGIMNMYGSKMRDHNWHRGGYGKIDVTRILEVSSNVGVSYLIDKHYKDNPQ 386
Query: 133 KFVQHMNNTS 142
KFV + S
Sbjct: 387 KFVDGLKRMS 396
>gi|308922611|gb|ADO51656.1| class A beta-lactamase RAHN-2 [Rahnella sp. 42-Carrot]
Length = 295
Score = 36.9 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 9/230 (3%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + + +L ++++++ + + MT
Sbjct: 66 AYRADERFAMCSTSKFMAASAILKQSETQTELLNRRVSLTRSDLVNYNPITEKHLDTGMT 125
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + S N + E L +K ++ + + + + L + A
Sbjct: 126 VGELAAAALQYSDNTAMNKLIEQLGGPQKVTEYARTLGDKTFRLDRTEPTLNTAIPGDDR 185
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+ L Q+ + A G KTG
Sbjct: 186 DTTSPRAMALSLQHVTLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWVVGDKTGSG 245
Query: 222 CASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A ++ LI + A R +A +++ G+
Sbjct: 246 DYGTTNDIAVIWPDNKAPLILITYFTQPQKDAKSRRDVLASAAKIVTPGY 295
>gi|295822157|gb|ADG36732.1| extended-spectrum class A beta-lactamase [Rahnella sp. 16-Salad]
gi|295822165|gb|ADG36736.1| extended-spectrum class A beta-lactamase [Rahnella sp. 193-Celery]
gi|295822167|gb|ADG36737.1| extended-spectrum class A beta-lactamase [Rahnella sp. 207-Apple]
gi|295822185|gb|ADG36746.1| extended-spectrum class A beta-lactamase [Rahnella sp. 330-Salad]
Length = 218
Score = 36.9 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + + +L ++++K+ + + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKQSETQTELLNRRVSLTKSDLVNYNPITEKHLDTGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + S N + E L K ++ + + + + L + A
Sbjct: 65 VGELAAAALQYSDNTAMNKLIEQLGGPRKVTEYARTLGDKTFRLDRTEPTLNTAIPGDDR 124
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+ L Q+ + A G KTG
Sbjct: 125 DTTSPRAMALSLQHVTLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWVVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ LI +
Sbjct: 185 DYGTTNDIAVIWPDNKAPLILIT 207
>gi|296330647|ref|ZP_06873125.1| beta-lactamase precursor [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674695|ref|YP_003866367.1| beta-lactamase precursor [Bacillus subtilis subsp. spizizenii str.
W23]
gi|296152329|gb|EFG93200.1| beta-lactamase precursor [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412939|gb|ADM38058.1| beta-lactamase precursor [Bacillus subtilis subsp. spizizenii str.
W23]
Length = 304
Score = 36.9 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 32/210 (15%), Positives = 60/210 (28%), Gaps = 5/210 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT T IA P+ + AS K++ A V + L + SK+
Sbjct: 67 IDTGTNKTIAYR-PNERFAYASTYKVLAAAAVLKKNPIE--KLNEVMHYSKDDLVTYSPI 123
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ + M+L + I S N + + K +K ++ + + T
Sbjct: 124 TEKHVDTGMSLKEISEAAIRYSDNTAGNILLQQLGGPKGFEKSLKQIGDHVTKANRFETD 183
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+A T + L + + A
Sbjct: 184 LNSAIPGDIRDTSTAKALASDLKAFTVDNTLTTDQRTILTDWMRGNATGDELIRAGAPTG 243
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQSLIA 241
G K+G N +A +++ I
Sbjct: 244 WEVGDKSGAGSYGTRNDIAIVWPPNRAPIV 273
>gi|257465496|ref|ZP_05629867.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Actinobacillus
minor 202]
gi|257451156|gb|EEV25199.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Actinobacillus
minor 202]
Length = 479
Score = 36.9 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 24 ETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVV 65
+ + + +T +I ++ D PAS K+ TA
Sbjct: 37 PSGTSATFIAKNLDTNQIITQHQSDIFMLPASTQKVFTALAA 78
>gi|282860279|ref|ZP_06269349.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella bivia JCVIHMP010]
gi|282586953|gb|EFB92188.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Prevotella bivia JCVIHMP010]
Length = 446
Score = 36.9 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D ++ ++ PAS K +TA
Sbjct: 101 GVMIWDLTDDTLLFQHNEQLHLRPASTMKCVTAIAALDK 139
>gi|206562254|ref|YP_002233017.1| putative beta-lactamase [Burkholderia cenocepacia J2315]
gi|198038294|emb|CAR54249.1| putative beta-lactamase, class D [Burkholderia cenocepacia J2315]
Length = 268
Score = 36.9 bits (83), Expect = 4.5, Method: Composition-based stats.
Identities = 12/104 (11%), Positives = 21/104 (20%), Gaps = 3/104 (2%)
Query: 32 TLLDTNTGHVIAEN-YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ D TG V+ + PAS K+ + F K TP
Sbjct: 28 VVADAATGKVLVQQGDCTTRVTPASTFKVAIGLMGFDAGVLK--DAHTPTLDFHAGYPDW 85
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKF 134
+ + + +
Sbjct: 86 GGAPWREPTDPARWMKLSIFWYSQQVTQALGQARFQQYTSAFGY 129
>gi|317478452|ref|ZP_07937612.1| penicillin binding transpeptidase domain-containing protein
[Bacteroides sp. 4_1_36]
gi|316905341|gb|EFV27135.1| penicillin binding transpeptidase domain-containing protein
[Bacteroides sp. 4_1_36]
Length = 712
Score = 36.9 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 20/130 (15%), Positives = 34/130 (26%), Gaps = 21/130 (16%)
Query: 31 YTLLDTNTGHV-------------IAENYPDHP---WNPASLTKLMTAYVVFSFLKEKKA 74
L++ TG V E + P S K + V + K
Sbjct: 270 AVLMEVATGEVKAIVNMMKAGDGNYYEMNSNAISDMLEPGSTFKTASIMVALE---DGKI 326
Query: 75 MLTTPITISKNASEYPPSNS--TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
T + S + ++L V S ++ I + +
Sbjct: 327 TPDTEVDTGNGIMNMYGSKMRDHNWHRGGYGKIDVTRILEVSSNVGVSYLIDKHYKDNPQ 386
Query: 133 KFVQHMNNTS 142
KFV + S
Sbjct: 387 KFVDGLKRMS 396
>gi|253564576|ref|ZP_04842033.1| D-alanyl-D-alanine carboxypeptidase [Bacteroides sp. 3_2_5]
gi|251948352|gb|EES88634.1| D-alanyl-D-alanine carboxypeptidase [Bacteroides sp. 3_2_5]
gi|301161103|emb|CBW20640.1| putative exported D-alanyl-D-alanine carboxypeptidase
penicillin-binding protein [Bacteroides fragilis 638R]
Length = 469
Score = 36.9 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 12/78 (15%)
Query: 1 MRQFLVIIAMAMLSNIFP-----FLSIAETNKLP-------YYTLLDTNTGHVIAENYPD 48
M++ + I + +I F +I K ++ D +
Sbjct: 1 MKKLNLFILFSFCFSIITWGQANFAAIDSLIKKELPQGSEVGISVYDLTARKTLYTYRDT 60
Query: 49 HPWNPASLTKLMTAYVVF 66
PAS KL+T
Sbjct: 61 KLSRPASTMKLLTTITAL 78
>gi|15838215|ref|NP_298903.1| penicillin binding protein [Xylella fastidiosa 9a5c]
gi|9106663|gb|AAF84423.1|AE003988_10 penicillin binding protein [Xylella fastidiosa 9a5c]
Length = 494
Score = 36.9 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
D G V+ PAS KL+T Y F
Sbjct: 65 DGKIGDVLYARNTGSRTFPASNLKLVTLYSAF 96
>gi|265764763|ref|ZP_06093038.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 2_1_16]
gi|263254147|gb|EEZ25581.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Bacteroides sp. 2_1_16]
Length = 469
Score = 36.9 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 12/78 (15%)
Query: 1 MRQFLVIIAMAMLSNIFP-----FLSIAETNKLP-------YYTLLDTNTGHVIAENYPD 48
M++ + I + +I F +I K ++ D +
Sbjct: 1 MKKLNLFILFSFCFSIITWGQANFAAIDSLIKKELPQGSEVGISVYDLTARKTLYTYRDT 60
Query: 49 HPWNPASLTKLMTAYVVF 66
PAS KL+T
Sbjct: 61 KLSRPASTMKLLTTITAL 78
>gi|60679621|ref|YP_209765.1| putative exported D-alanyl-D-alanine carboxypeptidase
penicillin-binding protein [Bacteroides fragilis NCTC
9343]
gi|60491055|emb|CAH05803.1| putative exported D-alanyl-D-alanine carboxypeptidase
penicillin-binding protein [Bacteroides fragilis NCTC
9343]
Length = 469
Score = 36.9 bits (83), Expect = 4.6, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 12/78 (15%)
Query: 1 MRQFLVIIAMAMLSNIFP-----FLSIAETNKLP-------YYTLLDTNTGHVIAENYPD 48
M++ + I + +I F +I K ++ D +
Sbjct: 1 MKKLNLFILFSFCFSIITWGQANFAAIDSLIKKELPQGSEVGISVYDLTARKTLYTYRDT 60
Query: 49 HPWNPASLTKLMTAYVVF 66
PAS KL+T
Sbjct: 61 KLSRPASTMKLLTTITAL 78
>gi|328883738|emb|CCA56977.1| Beta-lactamase [Streptomyces venezuelae ATCC 10712]
Length = 463
Score = 36.9 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + SLTK+ TA +V E + L P
Sbjct: 60 DTDTQFRIGSLTKVFTAVLVMRLRDEGRLALDDP 93
>gi|300869388|ref|ZP_07113975.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300332615|emb|CBN59173.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 433
Score = 36.9 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 37/226 (16%), Positives = 70/226 (30%), Gaps = 14/226 (6%)
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
P +PASL K+ A + + ++K + + ++ S + L ++
Sbjct: 213 PRSPASLIKVPVAVALMHKVTKEKININEEVYVNPGNYTEDAS--EIRSRKRYPLKILVE 270
Query: 110 LLIVKSANDIAVAIAESLCKTE------KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+I S+N + + L + Q SK +G F G +
Sbjct: 271 EMIDHSSNIATNELMDYLGTDYINQVLENRGYQVTRVHSKLMGERTMPFNVGSG----PN 326
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
T+ ++ + +I +K G KTG
Sbjct: 327 RMTSNELTEMMVQIYNHEMPGNSVLIDALSRQYDRKLGFAALEGTQAKW-LGEKTGENSL 385
Query: 224 SGFNIVASAIQGDQSLIAVILGALDRNTRNKV-SASLLSMGFYNKT 268
+A +I G+ +I VI R+ + + L NK
Sbjct: 386 VLGTTLAMSIDGEGYIITVIDNRSGRDLQIRQCITKLADYIVRNKQ 431
>gi|189189214|ref|XP_001930946.1| beta-lactamase family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972552|gb|EDU40051.1| beta-lactamase family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 402
Score = 36.9 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
+ AS TKLMTA ++ + L P+
Sbjct: 53 NTVMWIASCTKLMTAICAMQLVERGQLRLDDPVY 86
>gi|301015192|gb|ADK47391.1| extended spectrum beta-lactamase [Capnocytophaga sputigena]
Length = 293
Score = 36.9 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 9/90 (10%), Positives = 24/90 (26%), Gaps = 9/90 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPYYTL----LDTNTGHVIAENYPDHPWN 52
M+++ + + F ++ + +++ G +
Sbjct: 1 MKKYFSFCLLGIFIFCFSQQNLKRDITKIIQGKNALVAVSVMNSK-GKTEVNINGNKKVP 59
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
S+ K A V + L I +
Sbjct: 60 MLSVFKFHIALAVLDLVDRGILDLEQNIFV 89
>gi|218263706|ref|ZP_03477733.1| hypothetical protein PRABACTJOHN_03423 [Parabacteroides johnsonii
DSM 18315]
gi|218222563|gb|EEC95213.1| hypothetical protein PRABACTJOHN_03423 [Parabacteroides johnsonii
DSM 18315]
Length = 249
Score = 36.9 bits (83), Expect = 4.7, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 51/155 (32%), Gaps = 19/155 (12%)
Query: 1 MRQFLVIIA-MAMLSNIFPFLSIAETNKLP-----------YYTLLDTNTGHVIAENYPD 48
MR+ L II ++ +S F + A N L +++ G +
Sbjct: 1 MRKLLFIIIYLSFISPAFAGGNKAIENALQEYIKGKDARIGIAIIIN---GKDTVSVNGN 57
Query: 49 HPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
+ S+ K A V +++ L+ +T S + + + KK +
Sbjct: 58 RDFPMMSVVKFPLALTVANWVDTNNMSLSDTVTFSGKSLKEDTYSPMLKKYGKSRNAMTV 117
Query: 109 K----LLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ +V+S N+ A + + +
Sbjct: 118 RELLEWSLVESDNNAADILLNCVGGVSGATSKMRQ 152
>gi|322835549|ref|YP_004215575.1| beta-lactamase [Rahnella sp. Y9602]
gi|321170750|gb|ADW76448.1| Beta-lactamase [Rahnella sp. Y9602]
Length = 295
Score = 36.9 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 31/230 (13%), Positives = 66/230 (28%), Gaps = 9/230 (3%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + + +L +++ K+ + + MT
Sbjct: 66 AYRADERFAMCSTSKFMAASAILKQSETQTELLNRRVSLKKSDLVNYNPITEKHLDTGMT 125
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + S N + E L +K ++ + + + + L + A
Sbjct: 126 VGELAAAALQYSDNTAMNKLIEQLGGPQKVTEYARTLGDKTFRLDRTEPTLNTAIPGDDR 185
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+ L Q+ + A G KTG
Sbjct: 186 DTTSPRAMALSLQHVTLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWVVGDKTGSG 245
Query: 222 CASGFNIVASAIQGDQ-SLIAVIL------GALDRNTRNKVSASLLSMGF 264
N +A ++ LI + A R +A +++ G+
Sbjct: 246 DYGTTNDIAVIWPDNKAPLILITYFTQPQKDAKSRRDVLASAAKIVTQGY 295
>gi|313207058|ref|YP_004046235.1| beta-lactamase [Riemerella anatipestifer DSM 15868]
gi|312446374|gb|ADQ82729.1| beta-lactamase [Riemerella anatipestifer DSM 15868]
gi|315022548|gb|EFT35575.1| penicillin-binding protein 4* [Riemerella anatipestifer RA-YM]
gi|325335505|gb|ADZ11779.1| beta-lactamase [Riemerella anatipestifer RA-GD]
Length = 415
Score = 36.9 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
+ P + AS++K MTA + ++ KK L
Sbjct: 102 NQNTPLHIASISKTMTAMAIMKLIEAKKIKLDQ 134
>gi|332305219|ref|YP_004433070.1| penicillin-binding protein transpeptidase [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332172548|gb|AEE21802.1| penicillin-binding protein transpeptidase [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 585
Score = 36.9 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 25/143 (17%)
Query: 25 TNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTKLMTAY 63
++D TG ++A P++ + P S K
Sbjct: 257 KATSASAVVVDVQTGEILAMVNNPSYNPNNRSGVSGHRIRNRAITDAFEPGSSIK---PI 313
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
V S L+ + + I S + + L ++ + +A++
Sbjct: 314 AVLSALEFGSVEMDSVIDTSPGWMRVGGSMVRDSRNYGELDLTGIIRKSSNMGTSKLALS 373
Query: 123 IAESLCKTEKKFVQHMNNTSKNL 145
+ + + + M++T NL
Sbjct: 374 VPKQFLIDQYYNMGLMSDTGSNL 396
>gi|303251834|ref|ZP_07338005.1| penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307249135|ref|ZP_07531142.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|302649264|gb|EFL79449.1| penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|306854423|gb|EFM86619.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
Length = 675
Score = 36.9 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 20/172 (11%), Positives = 43/172 (25%), Gaps = 25/172 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTK 58
+A + L+D TG ++A P+ + P S K
Sbjct: 343 AVVANNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFKPELMRNRAITDTFEPGSTVK 402
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ A + ++ + +++L L+ +
Sbjct: 403 PLVVLTALQNG----ATYRDEVINTRPFVVNGHTIKDVAPRESLSLTGILQKSSNIGVSR 458
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+ + + V +T LG + T A
Sbjct: 459 LALRMPSTALVDTYSKVGFGKDTGLGLGEQKGTNGDRKRWSDIERATMAYGY 510
>gi|288871635|ref|ZP_06118326.2| cell division protein FtsI/penicillin-binding protein 2
[Clostridium hathewayi DSM 13479]
gi|288862704|gb|EFC95002.1| cell division protein FtsI/penicillin-binding protein 2
[Clostridium hathewayi DSM 13479]
Length = 482
Score = 36.9 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 15/183 (8%), Positives = 39/183 (21%), Gaps = 36/183 (19%)
Query: 30 YYTLLDTNTGHVIA-----ENYPDHP-------------------------WNPASLTKL 59
++ +TG ++A + P+ + P S K+
Sbjct: 169 AVVAMEPDTGKILAMVSKPDYNPNTLSTDWDALVAGDNGEGQLLNRAAQGLYPPGSTFKI 228
Query: 60 MTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDI 119
+TA +++E Y + + +
Sbjct: 229 VTA---LEYIRENPENFRDYRFDCSGFFHYEDYTIKCYHETAHGSQDFTRAFANSCNGAF 285
Query: 120 AVAIAESLCKTEKKFVQHMNNTSK---NLGLSATHFMNAHGVVQHGHYTTARDMAILSWR 176
A + + + + + S + + G T+
Sbjct: 286 ANLALTLDLGRLRNTAEQLLFNTPLPVAIPYSQSAYALTPGGDTWQILQTSIGQGQTQMT 345
Query: 177 IKT 179
Sbjct: 346 PIH 348
>gi|172040891|ref|YP_001800605.1| penicillin-binding protein [Corynebacterium urealyticum DSM 7109]
gi|171852195|emb|CAQ05171.1| penicillin-binding protein [Corynebacterium urealyticum DSM 7109]
Length = 631
Score = 36.9 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 24/70 (34%)
Query: 25 TNKLPYYTLLDTNTGHVIA------------------------ENYPDHPWNPASLTKLM 60
+ +LD + VIA + + P S+ K+M
Sbjct: 283 KAESASAVVLDAKSAEVIAMATSDTIDPNGDLQKQLRGNKAFGDRNTAETFEPGSIAKIM 342
Query: 61 TAYVVFSFLK 70
TA K
Sbjct: 343 TAAAAIEEKK 352
>gi|53711316|ref|YP_097308.1| D-alanyl-D-alanine carboxypeptidase [Bacteroides fragilis YCH46]
gi|52214181|dbj|BAD46774.1| D-alanyl-D-alanine carboxypeptidase [Bacteroides fragilis YCH46]
Length = 468
Score = 36.9 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 12/78 (15%)
Query: 1 MRQFLVIIAMAMLSNIFP-----FLSIAETNKLP-------YYTLLDTNTGHVIAENYPD 48
M++ + I + +I F +I K ++ D +
Sbjct: 1 MKKLNLFILFSFCFSIITWGQANFAAIDSLIKKELPQGSEVGISVYDLTARKTLYTYRDT 60
Query: 49 HPWNPASLTKLMTAYVVF 66
PAS KL+T
Sbjct: 61 KLSRPASTMKLLTTITAL 78
>gi|109899826|ref|YP_663081.1| peptidoglycan glycosyltransferase [Pseudoalteromonas atlantica T6c]
gi|109702107|gb|ABG42027.1| peptidoglycan synthetase FtsI [Pseudoalteromonas atlantica T6c]
Length = 586
Score = 36.9 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 19/143 (13%), Positives = 43/143 (30%), Gaps = 25/143 (17%)
Query: 25 TNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTKLMTAY 63
++D TG ++A P++ + P S K
Sbjct: 258 KATSASAVVVDVQTGEILAMVNNPSYNPNNRSGVSGHRIRNRAITDAFEPGSSIK---PI 314
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPP-SNSTFKKGSTMTLDNALKLLIVKSANDIAVA 122
V S L+ + + I S + + L ++ + +A++
Sbjct: 315 AVLSALEFGSVEMDSVIDTSPGWMRVGGSMVRDSRNYGELDLTGIIRKSSNMGTSKLALS 374
Query: 123 IAESLCKTEKKFVQHMNNTSKNL 145
+ + + + M++T NL
Sbjct: 375 VPKQFLIDQYYNMGLMSDTGSNL 397
>gi|325954294|ref|YP_004237954.1| beta-lactamase [Weeksella virosa DSM 16922]
gi|323436912|gb|ADX67376.1| beta-lactamase [Weeksella virosa DSM 16922]
Length = 419
Score = 36.9 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 32 TLLDTNTGHVIAENY----PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
L + G E + P + AS++K+MT+ + ++ KK L
Sbjct: 92 ILFEAYDGFADVEKNIPLTAETPIHIASVSKVMTSLAILKLVEHKKLTLDQT 143
>gi|260775436|ref|ZP_05884333.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608617|gb|EEX34782.1| D-alanyl-D-alanine carboxypeptidase [Vibrio coralliilyticus ATCC
BAA-450]
Length = 476
Score = 36.9 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 28 LPYYTLLDT--NTGHVIAENYPDHPWNPASLTKLMTAYVV 65
L+++ ++ + D + PAS KL+TA
Sbjct: 32 SRAALLVESLDQQNSLLDTHNSDQYFPPASTLKLVTALAA 71
>gi|255535675|ref|YP_003096046.1| D-alanyl-D-alanine carboxypeptidase [Flavobacteriaceae bacterium
3519-10]
gi|255341871|gb|ACU07984.1| D-alanyl-D-alanine carboxypeptidase [Flavobacteriaceae bacterium
3519-10]
Length = 475
Score = 36.9 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 14/80 (17%)
Query: 1 MRQFLVIIAMA------------MLSNIFPFLSIAETNKLP-YYTLLDTNTGHVIAENYP 47
M + +V+ MA + + L+ + D G + E
Sbjct: 19 MNRLIVVALMASNVAFAQNVGQKLRTATQNLLASTPAYSANLSVYVAD-ENGEFVYEYNG 77
Query: 48 DHPWNPASLTKLMTAYVVFS 67
+ + AS K+ TA
Sbjct: 78 NQGLSTASTQKIFTAAAALE 97
>gi|218777887|ref|YP_002429205.1| penicillin-binding protein transpeptidase [Desulfatibacillum
alkenivorans AK-01]
gi|218759271|gb|ACL01737.1| penicillin-binding protein transpeptidase [Desulfatibacillum
alkenivorans AK-01]
Length = 438
Score = 36.9 bits (83), Expect = 4.8, Method: Composition-based stats.
Identities = 19/151 (12%), Positives = 35/151 (23%), Gaps = 21/151 (13%)
Query: 22 IAETNKLPYYTLLDTNTGHVI----AENYP-------DHPWNPASLTKLMTAYVVFSFLK 70
E + + ++ TG V+ P + AS+ K++TA
Sbjct: 127 KPEYARAIAFVAMEPQTGKVLTMVGYHKDPKAGNPCTQVLFPAASVYKMVTAAAA----- 181
Query: 71 EKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT 130
+ + Y T K +DN I
Sbjct: 182 -----MDDKNFTPQTPVRYNGKKHTLYKSQLKDVDNKYTRHIDLEEAFSDSINPVFGKIG 236
Query: 131 EKKFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + SK +G +
Sbjct: 237 VLLGPEALTAKSKAMGFEQDLGVECDFNPSQ 267
>gi|309791993|ref|ZP_07686471.1| beta-lactamase [Oscillochloris trichoides DG6]
gi|308225987|gb|EFO79737.1| beta-lactamase [Oscillochloris trichoides DG6]
Length = 352
Score = 36.9 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
+ ASLTKL TA + + L
Sbjct: 51 ANALVPVASLTKLATALAILRLVDLGVLDLD 81
>gi|269101909|ref|ZP_06154606.1| glutaminase [Photobacterium damselae subsp. damselae CIP 102761]
gi|268161807|gb|EEZ40303.1| glutaminase [Photobacterium damselae subsp. damselae CIP 102761]
Length = 319
Score = 36.9 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
TG +I +P+ S++K+MT +
Sbjct: 50 TGEIIDLYDAHYPFAIESISKIMTMGLALEQ 80
>gi|91217767|ref|ZP_01254723.1| Beta-lactamase class C family protein [Psychroflexus torquis ATCC
700755]
gi|91184105|gb|EAS70492.1| Beta-lactamase class C family protein [Psychroflexus torquis ATCC
700755]
Length = 362
Score = 36.9 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 21/100 (21%)
Query: 38 TGHVIAENYP---------------------DHPWNPASLTKLMTAYVVFSFLKEKKAML 76
+G ++ D +N AS+TK TA + +E K L
Sbjct: 44 SGTILVAKNGNITQKRAYGLASKELDVKNKTDTKFNIASITKTFTAVAILQLHEEGKIDL 103
Query: 77 TTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
TPI ++ +T L V +
Sbjct: 104 NTPIGNYLKDYPNEKVKNSVTISQLLTHTAGLPNFYVTNF 143
>gi|56459541|ref|YP_154822.1| cell division protein FtsI [Idiomarina loihiensis L2TR]
gi|56178551|gb|AAV81273.1| Cell division protein FtsI [Idiomarina loihiensis L2TR]
Length = 577
Score = 36.9 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 24/90 (26%)
Query: 25 TNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTKLMTAY 63
+LD TG V+A P++ + P S K
Sbjct: 250 QATSGSAVVLDVETGEVLAMVNSPSYNPNNRTDLQSFRMRNRAITDSYEPGSTMK---PL 306
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSN 93
VV S L++ + I S
Sbjct: 307 VVLSALEKGRHKAGDTIDTSPGWLRIGGRR 336
>gi|327404610|ref|YP_004345448.1| beta-lactamase [Fluviicola taffensis DSM 16823]
gi|327320118|gb|AEA44610.1| beta-lactamase [Fluviicola taffensis DSM 16823]
Length = 441
Score = 36.9 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 45 NYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D + S+TK+ TA ++F +++ K L
Sbjct: 69 RDQDTKYQVGSITKIYTAVLIFQLVEKGKLSLDDK 103
>gi|312886467|ref|ZP_07746076.1| Beta-lactamase [Mucilaginibacter paludis DSM 18603]
gi|311301095|gb|EFQ78155.1| Beta-lactamase [Mucilaginibacter paludis DSM 18603]
Length = 264
Score = 36.9 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 24/244 (9%), Positives = 64/244 (26%), Gaps = 25/244 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPYYTLLDTNTGHVIAENYPDHPWN--PA 54
M + L+ A+ ++ S+ + K T+ + T + + D PA
Sbjct: 1 MHRCLLFCALFFPLSLKAQASLQQPFKECRINGSTTIYNYKTKKWLLSDSADAQVATLPA 60
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S K++ + I +++ + +T+ A ++
Sbjct: 61 STFKVINILIALE---TGTIKDENEIIKWPGSTDTTLYGYRPEIYHDITVKEAFRVSAGW 117
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILS 174
+ ++A I + G A + ++
Sbjct: 118 AFIEMAKKIDRKKYQYYLDACD--------YGNHNLAEKGADFWNFGVFAISPKNQVEFL 169
Query: 175 WRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQ 234
++ + ++ + N KTG+T + ++
Sbjct: 170 IKVYEE--------KLPFSKRNIAILKNVMVTDTAPDYVIRSKTGWTKTNNEDLGWWVGY 221
Query: 235 GDQS 238
+
Sbjct: 222 VQRK 225
>gi|195977167|ref|YP_002122411.1| beta-lactamase [Streptococcus equi subsp. zooepidemicus MGCS10565]
gi|225869499|ref|YP_002745446.1| exported protein [Streptococcus equi subsp. equi 4047]
gi|195973872|gb|ACG61398.1| beta-lactamase [Streptococcus equi subsp. zooepidemicus MGCS10565]
gi|225698903|emb|CAW91893.1| putative exported protein [Streptococcus equi subsp. equi 4047]
Length = 428
Score = 36.9 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 22/204 (10%), Positives = 44/204 (21%), Gaps = 13/204 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAM-------LTTPITISKNASEYPPSNSTFKK 98
D AS++KL T Y V LK + + +
Sbjct: 222 NADKQMYAASISKLATLYSVQKKLKSGSLSEGKSLKYIDEVNHFYGDYDPTGSGKISKTA 281
Query: 99 G-STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+ LK + +S N + LC + Q +
Sbjct: 282 DKKDYNVMELLKAVAQQSDNVATNILGYYLCNQYNQAFQSEIRALAGVDWDM-----EKR 336
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++ + + + + + + + +
Sbjct: 337 LLSSHAAANLMEAIYYQKGQIISYLSQTAFDDQRISKNISVPVAHKIGDAYDYKHDVAIV 396
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
G A D + IA
Sbjct: 397 YGDNPFILSVFTDKASYDDITAIA 420
>gi|167623981|ref|YP_001674275.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella halifaxensis HAW-EB4]
gi|167354003|gb|ABZ76616.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Shewanella halifaxensis HAW-EB4]
Length = 476
Score = 36.9 bits (83), Expect = 4.9, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 14/79 (17%)
Query: 1 MRQFLVIIAMAMLSNIFPF-------LSIAETNKLPYYTLLDT----NTGHV---IAENY 46
+++F+ + +++ + E ++ + GHV
Sbjct: 2 LKRFVAATTLCLIATSAVADDYLANMVKAIEPKTSQTAIVVSPLNLNDEGHVSSPAYRKD 61
Query: 47 PDHPWNPASLTKLMTAYVV 65
+ PAS KL+TA
Sbjct: 62 AQRLFVPASTMKLLTAVAA 80
>gi|330820061|ref|YP_004348923.1| Beta-lactamase [Burkholderia gladioli BSR3]
gi|327372056|gb|AEA63411.1| Beta-lactamase [Burkholderia gladioli BSR3]
Length = 268
Score = 36.9 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 30/222 (13%), Positives = 53/222 (23%), Gaps = 28/222 (12%)
Query: 32 TLLDTNTGHVIAENYP--DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ D +G +++E PAS K+ S + +L T
Sbjct: 18 VVADAASGSILSERGEGCATRVTPASTFKI-----ALSLMGYDAGVLKDEHT-------- 64
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
F+ G + + + S TE ++ LG
Sbjct: 65 --PLLPFRAGYPAWGGDVWRQPTDPARWIRYSVFWYSQRITEALGQARFARYTRELGFGN 122
Query: 150 THFMNAHGVVQ-HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
G A + I T +++ T
Sbjct: 123 ADVHAGPGEFSGMKGAWNAGTLRISPREQITFLRGIVNHRLPVSAHAIEMTGRITQLDEQ 182
Query: 209 TFLGADGMKTGFTCASGFN----------IVASAIQGDQSLI 240
KTG + V A +GD+S++
Sbjct: 183 RDGWTVHGKTGTSSPGEDGKFDRAHAYGWFVGWATRGDRSVV 224
>gi|188587636|ref|YP_001919710.1| N-acetylmuramoyl-L-alanine amidase CwlD [Clostridium botulinum E3
str. Alaska E43]
gi|251778316|ref|ZP_04821236.1| N-acetylmuramoyl-L-alanine amidase CwlD [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|188497917|gb|ACD51053.1| N-acetylmuramoyl-L-alanine amidase CwlD [Clostridium botulinum E3
str. Alaska E43]
gi|243082631|gb|EES48521.1| N-acetylmuramoyl-L-alanine amidase CwlD [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 220
Score = 36.9 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHV 41
M++ L I + L P +AE NK + ++D G +
Sbjct: 3 MKRVLSIFCIIFLILGIPTSVLAEENKSKHVIVIDPGHGGI 43
>gi|6685153|gb|AAF23817.1|AF217649_1 beta-lactamase [Vibrio harveyi]
Length = 283
Score = 36.9 bits (83), Expect = 5.1, Method: Composition-based stats.
Identities = 27/212 (12%), Positives = 65/212 (30%), Gaps = 3/212 (1%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
+ DT T + D + S K + + S + +K + +
Sbjct: 41 VWDTQTDE-HWDYRGDERFPMMSTFKTLACATMLSDMDNEKLDKNATAKVEERNMVVWSP 99
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAI--AESLCKTEKKFVQHMNNTSKNLGLSAT 150
T +++A + ++ S N A + + + F++ + + + L
Sbjct: 100 VMDRMASQTTRIEHACEAAMLMSDNTAANIVLRSIGGPRGVTTFLRSIGDKATRLDRFEP 159
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
A+ + T + L ++ D Y Q+K K + +V
Sbjct: 160 RLNEANPGDKRDTTTPNAMVNTLHTLLEGDALSYESRIQLKIWMQDNKVSDSLMRSVLPK 219
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAV 242
+ ++G I A + + + +
Sbjct: 220 GWSIADRSGAGGFGSRGITAMIWKENHKPVYI 251
>gi|238898851|ref|YP_002924533.1| division-specific transpeptidase, penicillin-binding protein 3
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466611|gb|ACQ68385.1| division-specific transpeptidase, penicillin-binding protein 3
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 583
Score = 36.5 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 36/137 (26%), Gaps = 24/137 (17%)
Query: 19 FLSIAETNKLPYYTLLDTNTGHVIA-----ENYPD----------------HPWNPASLT 57
IA + LLD NTG V+A P+ + P S
Sbjct: 246 QAVIAHKAESGTAVLLDVNTGEVLAMANSPSYNPNNLMNTPQKAMRNRAITDIFEPGSTV 305
Query: 58 KLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAN 117
K M VV + L+ + + + + + K V +
Sbjct: 306 KPM---VVMAALQHGVIEKDSVLNTTPYYINGHKIHDISFYPKLSITEILQKSSNVGVSK 362
Query: 118 DIAVAIAESLCKTEKKF 134
+ + KF
Sbjct: 363 LALAMPPLWVAEIYSKF 379
>gi|82548137|gb|ABB82608.1| beta-lactamase [Staphylococcus aureus]
Length = 281
Score = 36.5 bits (82), Expect = 5.2, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE----TNKLPY-----YTLLDTNTGHVIAENYPDHPW 51
M++ + +IA+A++ + S + Y LDT +G + D +
Sbjct: 1 MKKLIFLIAIALVLSACNSXSSHAKELNDLEKKYNAHIGVYALDTKSGKE-VKFNSDKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L I I K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKIHIXKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + + ++ + K LG T+ +
Sbjct: 118 MAYSDNTANNKIIKEI-----GGIKKVKQRLKELGDKVTNPVRYE 157
>gi|262197090|ref|YP_003268299.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Haliangium ochraceum
DSM 14365]
gi|262080437|gb|ACY16406.1| peptidase S13 D-Ala-D-Ala carboxypeptidase C [Haliangium ochraceum
DSM 14365]
Length = 627
Score = 36.5 bits (82), Expect = 5.3, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
++D TG + D NPAS KL++ L
Sbjct: 101 AIYIVDAKTGAPLFAAQEDELLNPASNVKLISTATALDALGPNW 144
>gi|150026218|ref|YP_001297044.1| penicillin-binding protein [Flavobacterium psychrophilum
JIP02/86]
gi|149772759|emb|CAL44243.1| Probable penicillin-binding protein [Flavobacterium psychrophilum
JIP02/86]
Length = 495
Score = 36.5 bits (82), Expect = 5.3, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 21/98 (21%)
Query: 2 RQFLVIIAMAMLSNIFP-------FLSIAETNKLPYYTLLDTNTGHVIAEN--------- 45
++F VI+ L+NI F ++++ N ++ + +G + N
Sbjct: 3 KRFFVILLTTFLANILSGQELNDFFSTLSKNNIFKGSVVI-SKSGKKVFSNSYGFSNIEK 61
Query: 46 ----YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ AS+TK TA + ++ K + P
Sbjct: 62 KEKINDKSQFPIASITKTFTATAILQLQQKGKLNINEP 99
>gi|307249211|ref|ZP_07531208.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307260463|ref|ZP_07542158.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307262592|ref|ZP_07544223.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|306858735|gb|EFM90794.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306869866|gb|EFN01648.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306872090|gb|EFN03803.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 675
Score = 36.5 bits (82), Expect = 5.3, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 43/172 (25%), Gaps = 25/172 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTK 58
IA + L+D TG ++A P+ + P S K
Sbjct: 343 AVIANNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFKPELMRNRAITDTFEPGSTVK 402
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ A + ++ + +++L L+ +
Sbjct: 403 PLVVLTALQNG----ATYRDEVINTRPFVVNGHTIKDVAPRESLSLTGILQKSSNIGVSR 458
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+ + + V +T LG + T A
Sbjct: 459 LALRMPSTALVDTYSKVGFGKDTGLGLGEQKGTNGDRKRWSDIERATMAYGY 510
>gi|307244813|ref|ZP_07526912.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307253767|ref|ZP_07535621.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307256033|ref|ZP_07537821.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307258224|ref|ZP_07539967.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306854258|gb|EFM86464.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306863251|gb|EFM95191.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306865455|gb|EFM97350.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306867684|gb|EFM99529.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 675
Score = 36.5 bits (82), Expect = 5.3, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 43/172 (25%), Gaps = 25/172 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTK 58
IA + L+D TG ++A P+ + P S K
Sbjct: 343 AVIANNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFKPELMRNRAITDTFEPGSTVK 402
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ A + ++ + +++L L+ +
Sbjct: 403 PLVVLTALQNG----ATYRDEVINTRPFVVNGHTIKDVAPRESLSLTGILQKSSNIGVSR 458
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+ + + V +T LG + T A
Sbjct: 459 LALRMPSTALVDTYSKVGFGKDTGLGLGEQKGTNGDRKRWSDIERATMAYGY 510
>gi|303250491|ref|ZP_07336688.1| peptidoglycan synthetase FtsI [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307251533|ref|ZP_07533440.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302650479|gb|EFL80638.1| peptidoglycan synthetase FtsI [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306860997|gb|EFM93003.1| Penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 675
Score = 36.5 bits (82), Expect = 5.3, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 43/172 (25%), Gaps = 25/172 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTK 58
IA + L+D TG ++A P+ + P S K
Sbjct: 343 AVIANNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFKPELMRNRAITDTFEPGSTVK 402
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ A + ++ + +++L L+ +
Sbjct: 403 PLVVLTALQNG----ATYRDEVINTRPFVVNGHTIKDVAPRESLSLTGILQKSSNIGVSR 458
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+ + + V +T LG + T A
Sbjct: 459 LALRMPSTALVDTYSKVGFGKDTGLGLGEQKGTNGDRKRWSDIERATMAYGY 510
>gi|282862164|ref|ZP_06271227.1| Peptidoglycan glycosyltransferase [Streptomyces sp. ACTE]
gi|282563189|gb|EFB68728.1| Peptidoglycan glycosyltransferase [Streptomyces sp. ACTE]
Length = 666
Score = 36.5 bits (82), Expect = 5.3, Method: Composition-based stats.
Identities = 25/163 (15%), Positives = 47/163 (28%), Gaps = 26/163 (15%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAENYP---------------------DHPWNPA 54
Y + +T TG V+A + P
Sbjct: 312 AIADQVEESKADRGYVIVQNTKTGEVLAMANAPGYDPNDLSQVDGAALGNAALQDVYEPG 371
Query: 55 SLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVK 114
S +K+M+ V A T + + T L ++ K
Sbjct: 372 STSKIMSMAAVLEE---GAATPATHVVVPNRLH--RGDRLFRDDIDHPTWYLTLNGVLAK 426
Query: 115 SANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
S+N + L KT+ + + + + + GL +T ++ G
Sbjct: 427 SSNIGTILATGQLGKTQAEANKVLYSYLRKFGLGSTTGLDYPG 469
>gi|300777087|ref|ZP_07086945.1| beta-lactamase [Chryseobacterium gleum ATCC 35910]
gi|18001151|gb|AAL55262.1|AF339733_1 extended-spectrum class A beta-lactamase [Chryseobacterium gleum]
gi|300502597|gb|EFK33737.1| beta-lactamase [Chryseobacterium gleum ATCC 35910]
Length = 292
Score = 36.5 bits (82), Expect = 5.3, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 1 MRQ----FLVIIAMAMLSNIFPFLSIAETNKLPYYTL----LDTNTGHVIAENYPDHPWN 52
M++ FL+I A ++ I K T+ L G + D
Sbjct: 1 MKKTTLLFLLISAFSLAQTSLLEQKINSIIKNKKATVGVSVLGFENG-FKYDKNGDKKLP 59
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPIT 81
S+ K A V + + + K L I
Sbjct: 60 MQSVFKFHIAAAVLNAVDQGKLSLDQKIM 88
>gi|332522951|ref|ZP_08399203.1| hypothetical protein STRPO_1973 [Streptococcus porcinus str.
Jelinkova 176]
gi|332314215|gb|EGJ27200.1| hypothetical protein STRPO_1973 [Streptococcus porcinus str.
Jelinkova 176]
Length = 348
Score = 36.5 bits (82), Expect = 5.4, Method: Composition-based stats.
Identities = 24/177 (13%), Positives = 46/177 (25%), Gaps = 7/177 (3%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D +G P S KL +V ++ K L I+ EY +
Sbjct: 113 DLESGKT-FSMNDRQPMTAGSTYKLPLNMLVVDETEKGKYSLEQRFDITNTTYEYDREHM 171
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
+ + + ++ A A + M+ K G
Sbjct: 172 AYVNQFAGAMSISEMQEYSLMYSENTPAYALADRLGG------MDKAYKKFGRYGKSKSE 225
Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+++ G+ TT + + +Y G G Y + +
Sbjct: 226 IKTILEEGNKTTTEYYIQVLDYLWRHKNKYKDILYYIGESFPGDYYKTYLPDIPIYQ 282
>gi|310815355|ref|YP_003963319.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Ketogulonicigenium vulgare Y25]
gi|308754090|gb|ADO42019.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Ketogulonicigenium vulgare Y25]
Length = 489
Score = 36.5 bits (82), Expect = 5.4, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
Y + G VI N P PAS K +TA
Sbjct: 57 SYLAARLSDGQVIEGNNPGMALAPASTAKAVTALYALD 94
>gi|304317847|ref|YP_003852992.1| beta-lactamase [Thermoanaerobacterium thermosaccharolyticum DSM
571]
gi|302779349|gb|ADL69908.1| beta-lactamase [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 259
Score = 36.5 bits (82), Expect = 5.5, Method: Composition-based stats.
Identities = 38/223 (17%), Positives = 77/223 (34%), Gaps = 15/223 (6%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY-PPSN 93
+ TG I + + + AS K++ ++ KE LT I +S
Sbjct: 24 NLKTGERI-DINEEMMFPSASTIKIVIMAQIYKMAKEGYIRLTDNIILSDFMKTNGSGIL 82
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
T++ + L+I+ S N A + + ++++N +++LG+ T
Sbjct: 83 YQLNSKHKFTIEELITLMIIISDNTAANVLI------DIADMKNINKMAEDLGMLHTKIQ 136
Query: 154 NAHGVVQ-----HGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVG 208
+ +YT +DM L + D + L+I K+ +
Sbjct: 137 RKMMDFEAAKSGKDNYTCPKDMTHL-LELIHDGKVVDEEYSNMMLDILKKQQDLGRLDLY 195
Query: 209 TFLGA-DGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRN 250
K G ++ ++ Q +I+V+ L N
Sbjct: 196 LPEDVLIAHKPGELKLLEHDVGIVFLENCQYIISVMTNNLSTN 238
>gi|190149281|ref|YP_001967806.1| peptidoglycan synthetase FtsI [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|189914412|gb|ACE60664.1| peptidoglycan synthetase FtsI [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
Length = 686
Score = 36.5 bits (82), Expect = 5.5, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 43/172 (25%), Gaps = 25/172 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTK 58
IA + L+D TG ++A P+ + P S K
Sbjct: 354 AVIANNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFKPELMRNRAITDTFEPGSTVK 413
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ A + ++ + +++L L+ +
Sbjct: 414 PLVVLTALQNG----ATYRDEVINTRPFVVNGHTIKDVAPRESLSLTGILQKSSNIGVSR 469
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+ + + V +T LG + T A
Sbjct: 470 LALRMPSTALVDTYSKVGFGKDTGLGLGEQKGTNGDRKRWSDIERATMAYGY 521
>gi|225563362|gb|EEH11641.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 582
Score = 36.5 bits (82), Expect = 5.6, Method: Composition-based stats.
Identities = 12/86 (13%), Positives = 24/86 (27%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + AS++K+MT Y K + + E
Sbjct: 105 NGDTMYRIASISKVMTLYTFLIEAGFKYFNEPVAKFVPEIEREIQRQWGNIDDTLVPQWR 164
Query: 106 NALKLLIVKSANDIAVAIAESLCKTE 131
+ ND+A + +++
Sbjct: 165 EITVGSLANYYNDMAGRVNQTVTTQF 190
>gi|165975470|ref|YP_001651063.1| penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165875571|gb|ABY68619.1| penicillin-binding protein 3 [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 686
Score = 36.5 bits (82), Expect = 5.6, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 43/172 (25%), Gaps = 25/172 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTK 58
IA + L+D TG ++A P+ + P S K
Sbjct: 354 AVIANNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFKPELMRNRAITDTFEPGSTVK 413
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ A + ++ + +++L L+ +
Sbjct: 414 PLVVLTALQNG----ATYRDEVINTRPFVVNGHTIKDVAPRESLSLTGILQKSSNIGVSR 469
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+ + + V +T LG + T A
Sbjct: 470 LALRMPSTALVDTYSKVGFGKDTGLGLGEQKGTNGDRKRWSDIERATMAYGY 521
>gi|59711081|ref|YP_203857.1| D-alanyl-D-alanine carboxypeptidase/endopeptidase [Vibrio
fischeri ES114]
gi|59479182|gb|AAW84969.1| D-alanyl-D-alanine carboxypeptidase [Vibrio fischeri ES114]
Length = 468
Score = 36.5 bits (82), Expect = 5.6, Method: Composition-based stats.
Identities = 11/55 (20%), Positives = 24/55 (43%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKL 59
L +I+ + +++I LS + T+ + + + + D PAS K+
Sbjct: 11 LSLISFSSIADIKETLSSLPSGSRTAITVENLQSNKIEFQQKQDELLPPASTLKI 65
>gi|53729125|ref|ZP_00134089.2| COG0768: Cell division protein FtsI/penicillin-binding protein 2
[Actinobacillus pleuropneumoniae serovar 1 str. 4074]
gi|126207500|ref|YP_001052725.1| peptidoglycan synthetase FtsI [Actinobacillus pleuropneumoniae L20]
gi|126096292|gb|ABN73120.1| peptidoglycan synthetase FtsI [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 686
Score = 36.5 bits (82), Expect = 5.6, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 43/172 (25%), Gaps = 25/172 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTK 58
IA + L+D TG ++A P+ + P S K
Sbjct: 354 AVIANNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFKPELMRNRAITDTFEPGSTVK 413
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ A + ++ + +++L L+ +
Sbjct: 414 PLVVLTALQNG----ATYRDEVINTRPFVVNGHTIKDVAPRESLSLTGILQKSSNIGVSR 469
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+ + + V +T LG + T A
Sbjct: 470 LALRMPSTALVDTYSKVGFGKDTGLGLGEQKGTNGDRKRWSDIERATMAYGY 521
>gi|332885962|gb|EGK06206.1| hypothetical protein HMPREF9456_00080 [Dysgonomonas mossii DSM
22836]
Length = 733
Score = 36.5 bits (82), Expect = 5.6, Method: Composition-based stats.
Identities = 25/210 (11%), Positives = 53/210 (25%), Gaps = 37/210 (17%)
Query: 25 TNKLPY--YTLLDTNTGH-------------VIAENYPDHPWN---PASLTKLMTAYVVF 66
+++ TG V AE P+ P S K ++ +
Sbjct: 284 ETNAESGCAIVMEVATGEIKAITNLDRLSPGVYAEGNPNAFSYMSEPGSTFKTVSLMIAL 343
Query: 67 SFLKEKKAMLTTPITISKNASEYPPS---NSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
+ I + EY + ++KG + + IA I
Sbjct: 344 E---DGVVTPDEEIFVGNGLFEYKGRIVKDHDWRKGQDKGYVTVARGMYSSLNVAIAKMI 400
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
+ +K+V +LGL+ + + + R D
Sbjct: 401 LKGYENNPQKYV----QRIHDLGLTKKIEWDVP-LQGKEGTSVIR--------FPDDKSN 447
Query: 184 YMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+ + + + + + G
Sbjct: 448 PWSKTTLPWMSFGYETQVPPIYMLMFYNGI 477
>gi|163736833|ref|ZP_02144251.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Phaeobacter gallaeciensis BS107]
gi|161389437|gb|EDQ13788.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Phaeobacter gallaeciensis BS107]
Length = 494
Score = 36.5 bits (82), Expect = 5.6, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D TG + PAS+ K +TA
Sbjct: 63 VADVKTGLRLEAEGAGAGLPPASVAKALTALYALDA 98
>gi|163743661|ref|ZP_02151036.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Phaeobacter gallaeciensis 2.10]
gi|161383028|gb|EDQ07422.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Phaeobacter gallaeciensis 2.10]
Length = 494
Score = 36.5 bits (82), Expect = 5.6, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ D TG + PAS+ K +TA
Sbjct: 63 VADVKTGLRLEAEGAGAGLPPASVAKALTALYALDA 98
>gi|300786998|ref|YP_003767289.1| beta-lactamase-like protein [Amycolatopsis mediterranei U32]
gi|299796512|gb|ADJ46887.1| beta-lactamase-like protein [Amycolatopsis mediterranei U32]
Length = 299
Score = 36.5 bits (82), Expect = 5.7, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ + D +G + PD + ASL K+ A V ++ + + + +
Sbjct: 21 SFLVRDLRSGAEL-GIDPDREYPIASLVKVPLAAVTLDRVRRGELDVAAQLEVPPGGVTT 79
Query: 90 PPS 92
P
Sbjct: 80 PGP 82
>gi|157151309|ref|YP_001451361.1| hypothetical protein SGO_2136 [Streptococcus gordonii str. Challis
substr. CH1]
gi|157076103|gb|ABV10786.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
substr. CH1]
Length = 426
Score = 36.5 bits (82), Expect = 5.7, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 1/85 (1%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
NTG A D AS+TKL Y L + K L + ++ ++Y + T
Sbjct: 211 LNTGKT-AGINQDTEMYSASVTKLPILYYAQEELNQGKITLAQGLKYIQDVNDYSGAYDT 269
Query: 96 FKKGSTMTLDNALKLLIVKSANDIA 120
GS + + + N IA
Sbjct: 270 EGSGSLPKEADNKEYSVQDLINHIA 294
>gi|254413032|ref|ZP_05026804.1| D-Ala-D-Ala carboxypeptidase 3 (S13) family [Microcoleus
chthonoplastes PCC 7420]
gi|196180196|gb|EDX75188.1| D-Ala-D-Ala carboxypeptidase 3 (S13) family [Microcoleus
chthonoplastes PCC 7420]
Length = 439
Score = 36.5 bits (82), Expect = 5.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 41 VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKK 73
V+AE+ P ASLTK+ T V S K
Sbjct: 88 VLAEHQGKIPRPAASLTKIATTLVTLSQWKPDH 120
>gi|307326692|ref|ZP_07605885.1| penicillin-binding protein transpeptidase [Streptomyces
violaceusniger Tu 4113]
gi|306887676|gb|EFN18669.1| penicillin-binding protein transpeptidase [Streptomyces
violaceusniger Tu 4113]
Length = 533
Score = 36.5 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 12/99 (12%)
Query: 27 KLPYYTLLDTNTGHVIAENYPDH---------PWNPASLTKLMTAYVVFSFLKEKKAMLT 77
L +TG ++A D P S K++TA + K
Sbjct: 254 DGASVVALKPSTGEILAVANSDQAEFNAALQGQTAPGSTFKIVTAATLLEA---GKVSPG 310
Query: 78 TPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSA 116
+ K A+ + S +
Sbjct: 311 HLVPCPKTAAYAQGMTFHNVEDSENPGATFAQDFAASCN 349
>gi|295822145|gb|ADG36726.1| extended-spectrum class A beta-lactamase [Rahnella sp. 120-Carrot]
Length = 218
Score = 36.5 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + + +L +++ K+ + + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKQSETQTELLNRRVSLKKSDLVNYNPITEKHLDTGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + S N + E L +K ++ + + + + L + A
Sbjct: 65 VGELAAAALQYSDNTAMNKLIEQLGGPQKVTEYARKLGDKTFRLDRTEPTLNTAIPGDDR 124
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+ L Q+ + A G KTG
Sbjct: 125 DTTSPRAMALSLQHVTLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWVVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ LI +
Sbjct: 185 DYGTTNDIAVIWPDNKAPLILIT 207
>gi|28883590|gb|AAO49767.1| beta-lactamase K1 [Klebsiella oxytoca]
Length = 223
Score = 36.5 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 2/91 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ ++ D + S +K+M A V + K ++ + I+ +
Sbjct: 55 ADNSQILY--RGDERFAMCSTSKVMAAAAVLKQSESNKEVVNKRLEINAADLVVWSPITE 112
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
S MTL + S N I
Sbjct: 113 KHLQSGMTLAELSAATLQYSDNTAMNLIIGY 143
>gi|300312666|ref|YP_003776758.1| D-alanyl-D-alanine carboxipeptidase 3 (S13) family signal peptide
protein [Herbaspirillum seropedicae SmR1]
gi|300075451|gb|ADJ64850.1| D-alanyl-D-alanine carboxipeptidase 3 (S13) family signal peptide
protein [Herbaspirillum seropedicae SmR1]
Length = 484
Score = 36.5 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 14 SNIFPFLSIAETNKLPYYTLLDTN-TGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + + ++DT + V+ N P+NPAS+ KL+T
Sbjct: 41 AVVGALRVAHIPQQNTGVLVIDTEGSKRVLVSNNIGQPFNPASVMKLVTTDAALEM 96
>gi|207722663|ref|YP_002253099.1| oxacillin hydrolase (class-d beta-lactamase) protein [Ralstonia
solanacearum MolK2]
gi|206587845|emb|CAQ18427.1| oxacillin hydrolase (class-d beta-lactamase) protein [Ralstonia
solanacearum MolK2]
Length = 272
Score = 36.5 bits (82), Expect = 5.8, Method: Composition-based stats.
Identities = 26/245 (10%), Positives = 53/245 (21%), Gaps = 21/245 (8%)
Query: 32 TLLDTNTGH-VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ D +G + E PAS K+ A + + K +
Sbjct: 28 IVADAASGKPIRYEGQCGERVTPASTFKIALAVMGYDAGFLKDEYAPVLSFRQGDPDWGG 87
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
S+ + + + A A + + + + +N GL +
Sbjct: 88 ADWHRPTDPSSWIQYSVVWYSQRITHALGADAFQSYVRRFGYGNMDVSGDAGRNNGLDRS 147
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNW----- 205
+++ + R + + G
Sbjct: 148 WIISSLKISPEEQVGFLRRLVNRQLPVSAHALDMTARITEAARLPGGWVVHGKMGTGAPG 207
Query: 206 ---------AVGTFLGADGMKTGFTCASGFNIVAS-----AIQGDQSLIAVILGA-LDRN 250
+ G T T F + A + +LGA
Sbjct: 208 TSSPDGTWDQAHAYGWFVGWATNGTKTYVFAHLLQDERIEARSAGRRARDAVLGALPAIL 267
Query: 251 TRNKV 255
R
Sbjct: 268 ARADD 272
>gi|229018755|ref|ZP_04175604.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
gi|229024997|ref|ZP_04181426.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
gi|228736332|gb|EEL86898.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1272]
gi|228742505|gb|EEL92656.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1273]
Length = 346
Score = 36.5 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 23/172 (13%), Positives = 45/172 (26%), Gaps = 4/172 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
L+ V+ PD AS KL+ A + E K ++ +S N
Sbjct: 28 SALLV-KRNDKVVYSVNPDVVLPVASTMKLIVALEYTKQVTEGKIDPSS--FVSINDVNR 84
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
ST K + +A+ + K L
Sbjct: 85 YYVPSTDGGAQDRWQSYLQKKEKITEGAVSLEEVAKGMVKFSSNANTEYLMEVLGLDNIN 144
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ + + H + + + + + K E+ ++Y
Sbjct: 145 RNL-QSLALPAHQPLFPIVSSLYIPGYLHKELHVPKYKIEKKLKEMSQEQYR 195
>gi|307701222|ref|ZP_07638244.1| putative D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Mobiluncus mulieris FB024-16]
gi|307613616|gb|EFN92863.1| putative D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Mobiluncus mulieris FB024-16]
Length = 505
Score = 36.5 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVF 66
+A PD PAS TKL TA
Sbjct: 104 LASANPDLALAPASTTKLFTAAATL 128
>gi|306819558|ref|ZP_07453264.1| serine-type D-Ala-D-Ala carboxypeptidase [Mobiluncus mulieris ATCC
35239]
gi|304647655|gb|EFM44974.1| serine-type D-Ala-D-Ala carboxypeptidase [Mobiluncus mulieris ATCC
35239]
Length = 505
Score = 36.5 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVF 66
+A PD PAS TKL TA
Sbjct: 104 LASANPDLALAPASTTKLFTAAATL 128
>gi|227876281|ref|ZP_03994397.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Mobiluncus mulieris ATCC 35243]
gi|269977964|ref|ZP_06184917.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Mobiluncus mulieris 28-1]
gi|227843242|gb|EEJ53435.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Mobiluncus mulieris ATCC 35243]
gi|269933811|gb|EEZ90392.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Mobiluncus mulieris 28-1]
Length = 505
Score = 36.5 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVF 66
+A PD PAS TKL TA
Sbjct: 104 LASANPDLALAPASTTKLFTAAATL 128
>gi|4493255|emb|CAA37699.1| beta-lactamase [Actinomadura sp. R39]
Length = 304
Score = 36.5 bits (82), Expect = 5.9, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 69/215 (32%), Gaps = 8/215 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT TG + D + AS K TA +V + L +T ++
Sbjct: 66 VDTGTGEEVFHR-ADERFGYASTHKAFTAALVL--GQNTPEELEEVVTYTEEDLVDYSPI 122
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ + MTL + S N A + E L + F + M ++ +
Sbjct: 123 TEQHVDTGMTLLEVADAAVRHSDNTAANLLFEEL-GGPEGFEEDMRELGDDVISADRIET 181
Query: 154 NAHGVV--QHGHYTTARDMA-ILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ V + +T R MA L + D + + + + A
Sbjct: 182 ELNEVPPGETRDTSTPRAMAGSLEAFVLGDVLEEGPRDVLTEMLLNNTTGDELIRAGVPE 241
Query: 211 LGADGMKT-GFTCASGFNIVASAIQGDQSLIAVIL 244
G KT G + S +I D ++ ++
Sbjct: 242 DWRVGDKTGGGSHGSRNDIAVVWPPEDDPIVIAVM 276
>gi|229029481|ref|ZP_04185563.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
gi|228731834|gb|EEL82734.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
Length = 363
Score = 36.5 bits (82), Expect = 6.0, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 20/65 (30%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTF 96
G V+ D AS+ K++ A + E K I++ + Y +
Sbjct: 56 KNGEVLTSINEDVKLPLASMAKIVIAVEFAKQVSEGKISRDEQISLQELEKYYVKNTDGG 115
Query: 97 KKGST 101
Sbjct: 116 MHPDW 120
>gi|229174210|ref|ZP_04301744.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
gi|228609228|gb|EEK66516.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus MM3]
Length = 359
Score = 36.5 bits (82), Expect = 6.0, Method: Composition-based stats.
Identities = 24/212 (11%), Positives = 56/212 (26%), Gaps = 15/212 (7%)
Query: 1 MRQFLVIIAMAML-----------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M F+++I+ L + ++ L+ ++ P+
Sbjct: 1 MGIFVLLISGNFLVKKVWSSNNDDAQYIASFIEEHKDEKNSALLV-KRNDKIVYSVNPNV 59
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS KL+ A + E K ++ +S N +T K
Sbjct: 60 VLPVASTMKLIVALEYTKQVTEGKIDPSS--FVSINDINRYYVPNTDGGAQDRWQRYLQK 117
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+ +A+ + K L + + + H
Sbjct: 118 TDKITEGAVSLEEVAKGMVKFSSNANAEYLMEVLGLDNINRNL-QSLSLPAHQPLFPIVS 176
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ + + + + K E+ ++Y
Sbjct: 177 SLYIPGYLHKELHVPKYKIEKKLKEMSQEQYR 208
>gi|37595775|ref|NP_932193.1| BlaZ [Staphylococcus aureus]
gi|57854755|ref|YP_187532.1| beta-lactamase [Staphylococcus epidermidis RP62A]
gi|258445835|ref|ZP_05694012.1| beta-lactamase [Staphylococcus aureus A6300]
gi|282875039|ref|ZP_06283913.1| beta-lactamase [Staphylococcus epidermidis SK135]
gi|537341|gb|AAA26647.1| beta-lactamase [Staphylococcus aureus]
gi|11230703|emb|CAC16665.1| beta-lactamase [Staphylococcus haemolyticus]
gi|35186913|gb|AAQ84127.1| BlaZ [Staphylococcus aureus]
gi|57635988|gb|AAW52777.1| beta-lactamase [Staphylococcus epidermidis RP62A]
gi|257855411|gb|EEV78349.1| beta-lactamase [Staphylococcus aureus A6300]
gi|281296178|gb|EFA88698.1| beta-lactamase [Staphylococcus epidermidis SK135]
gi|281334356|gb|ADA61440.1| Beta-lactamase [Staphylococcus epidermidis]
Length = 281
Score = 36.5 bits (82), Expect = 6.0, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE----TNKLPY-----YTLLDTNTGHVIAENYPDHPW 51
M++ + +IA+A++ + S + Y LDT +G + D +
Sbjct: 1 MKKLIFLIAIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKE-VKFNSDKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L I I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKIHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + + ++ + K LG T+ +
Sbjct: 118 MAYSDNTANNKIIKEI-----GGIKKVKQRLKELGDKVTNPVRYE 157
>gi|189203237|ref|XP_001937954.1| beta-lactamase family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985053|gb|EDU50541.1| beta-lactamase family protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 442
Score = 36.5 bits (82), Expect = 6.0, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 12/144 (8%)
Query: 18 PFLSIAETNKLPYYTL--LDTNTGHVIAENYPDHPWNP-A-------SLTKLMTAYVVFS 67
+ LP + +D V+ + P A SLTK++ A
Sbjct: 21 ATKPGTDNIILPAAIVHIVDEQNN-VLFSHGASANKPPTAESMTIIQSLTKIVGAMAYMK 79
Query: 68 FLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESL 127
++ L P TI+K E N + A +
Sbjct: 80 LVERDLTTLDDPATITKWLPELTAKNVLTGYTMDGETGQKQYQFEDRKGEITARMLMNHT 139
Query: 128 CKTEKK-FVQHMNNTSKNLGLSAT 150
F + + + ++LG+ T
Sbjct: 140 YGGGHTFFNKLLFDYVQDLGVWET 163
>gi|157368881|ref|YP_001476870.1| beta-lactam binding protein AmpH [Serratia proteamaculans 568]
gi|157320645|gb|ABV39742.1| beta-lactamase [Serratia proteamaculans 568]
Length = 380
Score = 36.5 bits (82), Expect = 6.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD AS+TKLMT+ V+ E + L P
Sbjct: 77 PDSLIRIASITKLMTSEVMVKMAAEGRVKLNDP 109
>gi|270269208|gb|ACZ66200.1| Beta-lactamase [Staphylococcus aureus]
Length = 281
Score = 36.5 bits (82), Expect = 6.1, Method: Composition-based stats.
Identities = 27/165 (16%), Positives = 58/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET---------NKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ +++IA+A++ + S N LDT +G + D +
Sbjct: 1 MKKLILLIAIALVLSACNSTSSHAKELNNLEKKYNANIGVYALDTKSGKE-VKFNADKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L + I+K+ G + L ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKVHINKDDIVAYSPILEKYVGKDIALKELIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + ++ + KNLG T+ +
Sbjct: 118 MKYSDNTANNKIINEI-----GGIKKIKKRLKNLGDKVTNPVRYE 157
>gi|332527255|ref|ZP_08403323.1| beta-lactamase [Rubrivivax benzoatilyticus JA2]
gi|332111675|gb|EGJ11656.1| beta-lactamase [Rubrivivax benzoatilyticus JA2]
Length = 289
Score = 36.5 bits (82), Expect = 6.1, Method: Composition-based stats.
Identities = 36/254 (14%), Positives = 68/254 (26%), Gaps = 18/254 (7%)
Query: 1 MRQ--FLVIIAMAMLSNIFPFLS-IAETNKLPYYT-----------LLDTNTGHVIAENY 46
M++ F A+ + P L+ A D TG + +
Sbjct: 1 MKRRSFHAWAALTLAVAGRPALALEAGDADAFGAIERSVAGRLGVCAYDLETGRSL-GHR 59
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGS-TMTLD 105
D + S K + A V + + + L I + A ++ G MT+
Sbjct: 60 QDERFAMCSTFKWLLAAAVLARVDRGQERLERRIVFGREALLEYAPTTSRHAGGAGMTVA 119
Query: 106 NALKLLIVKSANDIAVAIAESLCKTE--KKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ + S N A + ++L +V+ + + + L A +
Sbjct: 120 ELCEAALTLSDNTAANLLLDTLGGPGGLTAWVRTLGDRTTRLDRREPDLNEARPGDERDT 179
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
T A + L + + A KTG
Sbjct: 180 TTPAAMVLALRQAVFGGALSRRGGDLLLQWMTASTTGLKRLRAGFPPDWRVADKTGTGAQ 239
Query: 224 SGFNIVASAIQGDQ 237
+ VA +
Sbjct: 240 GTTHDVAVVWAPGR 253
>gi|322385870|ref|ZP_08059513.1| peptidase family S11 [Streptococcus cristatus ATCC 51100]
gi|321270155|gb|EFX53072.1| peptidase family S11 [Streptococcus cristatus ATCC 51100]
Length = 350
Score = 36.5 bits (82), Expect = 6.1, Method: Composition-based stats.
Identities = 35/223 (15%), Positives = 67/223 (30%), Gaps = 23/223 (10%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D +G P S KL +V + K L I+ + EY +
Sbjct: 118 DLTSGQT-YAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSLEERFDITNTSYEYKGEHD 176
Query: 95 TFKKGST--MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ M++ + + +V S N A A+AE L +K + + G S
Sbjct: 177 NYVAAFNGAMSIPDMQEYSLVYSENTPAYALAERLGGMDKAYS-----MFERYGRSKAKI 231
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ TT + + + +Y G +P + +
Sbjct: 232 KTI----SRENKTTTDYYIQVLEYLWNNQEKYKDILY-----FIGVSFPGEYYKRYLYDL 282
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIAVI----LGALDRNT 251
K G+ + V + + ++ I + LG +
Sbjct: 283 TIYQKPGYVREALN--VDAIVMEEKPYIVALYTAYLGGSTEAS 323
>gi|327468966|gb|EGF14438.1| peptidase family S11 [Streptococcus sanguinis SK330]
Length = 386
Score = 36.5 bits (82), Expect = 6.2, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 153 DLTTGKT-FAINDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 211
Query: 95 TF 96
+
Sbjct: 212 NY 213
>gi|47565473|ref|ZP_00236514.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
gi|47557463|gb|EAL15790.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
Length = 339
Score = 36.5 bits (82), Expect = 6.2, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + AS+ K++ A + E K
Sbjct: 33 NGEVLTSINENKKLPLASMAKIVIAVEFAKQVSEGKISRDE 73
>gi|255264412|ref|ZP_05343754.1| penicillin-binding protein 2 [Thalassiobium sp. R2A62]
gi|255106747|gb|EET49421.1| penicillin-binding protein 2 [Thalassiobium sp. R2A62]
Length = 652
Score = 36.5 bits (82), Expect = 6.2, Method: Composition-based stats.
Identities = 15/152 (9%), Positives = 26/152 (17%), Gaps = 43/152 (28%)
Query: 27 KLPYYTLLDTNTGHV---------------------------------------IAENYP 47
++D TG V +A
Sbjct: 266 DSASAVVIDVETGDVRAIASAPAFDPNMFVRGISVANWDALNERDTPRNQQKRPLAAKAV 325
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ P S K++TA + E K S N
Sbjct: 326 QGLYPPGSTFKMVTALAALEA---GVVDPEETVRC-PGHLEVADVKFHCWKRSGHGNINL 381
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
+ L + + +
Sbjct: 382 HESLKQSCDVYYYDIAQRVGIDKISEMAKRLG 413
>gi|225907432|gb|ACO36249.1| beta-lactamase Pen-B2 [Burkholderia cenocepacia]
Length = 312
Score = 36.5 bits (82), Expect = 6.2, Method: Composition-based stats.
Identities = 41/226 (18%), Positives = 67/226 (29%), Gaps = 5/226 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT +G +I E+ + S K M + V + E+ +L +T +K
Sbjct: 73 IDTASGRII-EHRAGERFPFCSTFKAMLSAAVLAQSVERPGLLQQRVTYTKADLVNYSPV 131
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
S GS MT+ + I S N A + + + + + + + L T
Sbjct: 132 SEKHVGSGMTVAALCEAAIQYSDNSAANLLMKLIGGPSAVTVYARSIGDDTFRLDRWETE 191
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T A A L D Q+ K A
Sbjct: 192 LNTALPGDPRDTTTPAAMAASLRVLTLGDALPAAQRAQLVAWLRGNKVGDKRIRAGVPAG 251
Query: 212 GADGMKTGFTCASGFNIVASAIQGDQ-SLIAVILGALDR-NTRNKV 255
G KTG N + ++ + R + R K
Sbjct: 252 WTVGDKTGTGDYGTTNDAGVIWPTSRAPIVLAVYYTQTRADARAKD 297
>gi|254441050|ref|ZP_05054543.1| Penicillin-binding Protein dimerisation domain family
[Octadecabacter antarcticus 307]
gi|198251128|gb|EDY75443.1| Penicillin-binding Protein dimerisation domain family
[Octadecabacter antarcticus 307]
Length = 654
Score = 36.5 bits (82), Expect = 6.2, Method: Composition-based stats.
Identities = 10/98 (10%), Positives = 21/98 (21%), Gaps = 4/98 (4%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGST 101
+A + P S K++TA + + ++ K S
Sbjct: 320 LAAKTVQGTYPPGSTFKMVTALAALE---DGAIGPDETVRC-VGHADVSDVRFHCWKRSG 375
Query: 102 MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMN 139
N + L + +
Sbjct: 376 HGNMNLNESLKQSCDVYYYDICQRVGIDKIAAMGRKLG 413
>gi|197104456|ref|YP_002129833.1| beta-lactamase [Phenylobacterium zucineum HLK1]
gi|196477876|gb|ACG77404.1| beta-lactamase [Phenylobacterium zucineum HLK1]
Length = 352
Score = 36.5 bits (82), Expect = 6.2, Method: Composition-based stats.
Identities = 19/165 (11%), Positives = 43/165 (26%), Gaps = 10/165 (6%)
Query: 33 LLDTNTGH--VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNA--SE 88
L++ +G +A D + S+ K++ V S + L ++++
Sbjct: 70 LMNLESGEAFTLA---GDRRFPMQSVFKMLLGAAVLSEADAGRLPLDERHSLTEEQLSPP 126
Query: 89 YPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKT---EKKFVQHMNNTSKNL 145
Y P + T L + S N A + + + + +
Sbjct: 127 YSPIAEAWPARRDYTARELLTAAVSVSDNTAADVLMKRIGGPGAVDAWLQARRIEEIRVD 186
Query: 146 GLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
AHG+ + + +
Sbjct: 187 RYERQLQTEAHGLPSFRPSWRTEAAFSTALAARPQTARMSAMRAY 231
>gi|169665625|gb|ACA63497.1| beta-lactamase TEM [Escherichia coli]
Length = 163
Score = 36.5 bits (82), Expect = 6.2, Method: Composition-based stats.
Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 2/123 (1%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
P+ + S K++ V S + + L I S+N + MT+
Sbjct: 1 PEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRE 60
Query: 107 ALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
I S N A + ++ ++ F+ +M + L A +
Sbjct: 61 LCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTT 120
Query: 165 TTA 167
A
Sbjct: 121 MPA 123
>gi|119714296|ref|YP_921261.1| peptidoglycan glycosyltransferase [Nocardioides sp. JS614]
gi|119534957|gb|ABL79574.1| cell elongation-specific peptidoglycan D,D-transpeptidase
[Nocardioides sp. JS614]
Length = 490
Score = 36.5 bits (82), Expect = 6.2, Method: Composition-based stats.
Identities = 14/119 (11%), Positives = 31/119 (26%), Gaps = 3/119 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LD + + P S K++TA K P + +
Sbjct: 199 LDADPTQPLLNRAIQTRLPPGSTFKILTAAAAIDNGLYKADDP-VPGGATFQLPQTSGPT 257
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
N ++ ++ + + M T++ G ++ +F
Sbjct: 258 GEIDNEGRSCGANNARIPFTQALAQSCNTSF--AQIAIEVGAEDMAKTAEGFGFNSHYF 314
>gi|289641088|ref|ZP_06473256.1| beta-lactamase [Frankia symbiont of Datisca glomerata]
gi|289509029|gb|EFD29960.1| beta-lactamase [Frankia symbiont of Datisca glomerata]
Length = 299
Score = 36.5 bits (82), Expect = 6.3, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 12/78 (15%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAEN-------YPDHPWNPASLTKLMT 61
A+A+L + TG + D + AS++KL++
Sbjct: 16 AVAVLLSGGSADPGGPAGSSTAA-----GTGDALGAVTVAGSVGDADRLFRLASVSKLLS 70
Query: 62 AYVVFSFLKEKKAMLTTP 79
AY V ++E L P
Sbjct: 71 AYAVLIAVEEGVFALDDP 88
>gi|238753036|ref|ZP_04614493.1| Penicillin-binding protein ampH [Yersinia rohdei ATCC 43380]
gi|238708757|gb|EEQ01018.1| Penicillin-binding protein ampH [Yersinia rohdei ATCC 43380]
Length = 380
Score = 36.5 bits (82), Expect = 6.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD AS+TKLMT+ V+ ++ LT P
Sbjct: 81 PDSLIRIASITKLMTSEVMVKMAEDGTVKLTDP 113
>gi|370769|prf||1616230A beta lactamase
Length = 304
Score = 36.5 bits (82), Expect = 6.3, Method: Composition-based stats.
Identities = 35/215 (16%), Positives = 64/215 (29%), Gaps = 8/215 (3%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+DT TG + D + AS K TA +V + L +T ++
Sbjct: 66 VDTGTGEEVFHR-ADERFGYASTHKAFTAALVL--GQNTPEELEEVVTYTEEDLVDYSPI 122
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ + MTL + S N A + E L + F + M ++ +
Sbjct: 123 TEQHVDTGMTLLEVADAAVRHSDNTAANLLFEEL-GGPEGFEEDMRELGDDVISADRIET 181
Query: 154 NAHGVV---QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ V T L + D + + + + A
Sbjct: 182 ELNEVPPGGTRDTSTPRAMAGSLEAFVLGDVLEEGPRDVLTEMLLNNTTGDELIRAGVPE 241
Query: 211 LGADGMKT-GFTCASGFNIVASAIQGDQSLIAVIL 244
G KT G + S +I D ++ ++
Sbjct: 242 DWRVGDKTGGGSHGSRNDIAVVWPPEDDPIVIAVM 276
>gi|229155374|ref|ZP_04283484.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
gi|228628089|gb|EEK84806.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
Length = 370
Score = 36.5 bits (82), Expect = 6.4, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + AS+ K++ A + E K
Sbjct: 64 NGEVLTSINENKKLPLASMAKIVIAVEFAKQVSEGKISRDE 104
>gi|258654695|ref|YP_003203851.1| beta-lactamase [Nakamurella multipartita DSM 44233]
gi|258557920|gb|ACV80862.1| beta-lactamase [Nakamurella multipartita DSM 44233]
Length = 268
Score = 36.5 bits (82), Expect = 6.4, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTP 79
ASLTK++TA V E L
Sbjct: 38 ASLTKVITALTVLDASVEGVISLDDE 63
>gi|187934516|ref|YP_001884511.1| N-acetylmuramoyl-L-alanine amidase CwlD [Clostridium botulinum B
str. Eklund 17B]
gi|187722669|gb|ACD23890.1| N-acetylmuramoyl-L-alanine amidase CwlD [Clostridium botulinum B
str. Eklund 17B]
Length = 220
Score = 36.5 bits (82), Expect = 6.4, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHV 41
M++ L I + L P +AE NK + ++D G +
Sbjct: 3 MKRVLSIFCIIFLILGIPTRVLAEENKSKHVIVIDPGHGGI 43
>gi|38155781|gb|AAR12671.1| beta-lactamase [Staphylococcus aureus]
Length = 179
Score = 36.5 bits (82), Expect = 6.4, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNI----FPFLSIAETNKLPY-----YTLLDTNTGHVIAENYPDHPW 51
M++ + +IA+A++ + P + Y LDT +G + D +
Sbjct: 1 MKKLIFLIAIALVLSACNSNSPHAKKLNDLEKKYNAHIGVYALDTKSGKE-VKFNSDKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L I I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQIPYN--KLNKKIHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + + ++ + K LG T+ +
Sbjct: 118 MTYSDNTANNKIIKEI-----GGIKKVKQRLKELGDKVTNPVRYE 157
>gi|189502343|ref|YP_001958060.1| hypothetical protein Aasi_0975 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497784|gb|ACE06331.1| hypothetical protein Aasi_0975 [Candidatus Amoebophilus asiaticus
5a2]
Length = 532
Score = 36.5 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 20/86 (23%)
Query: 2 RQFLVI-IAMAMLSNIFPFLSIAETNKLPYYT-------------------LLDTNTGHV 41
++ L + I+ +++ + + E KL ++T T V
Sbjct: 5 KKILYLGISFSLVFVSYSSKANNEQLKLSSIVEIQGITDESVLKNASVSLYAVNTATREV 64
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFS 67
I P PAS KL T
Sbjct: 65 IHSINPHISLVPASSLKLFTTATALE 90
>gi|218896729|ref|YP_002445140.1| hypothetical protein BCG9842_B3583 [Bacillus cereus G9842]
gi|218544366|gb|ACK96760.1| conserved domain protein [Bacillus cereus G9842]
Length = 363
Score = 36.5 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + AS+ K++ A + E K
Sbjct: 57 NGEVLTSINENKKLPLASMAKIVIAVEFAKQVSEGKISRDE 97
>gi|56476696|ref|YP_158285.1| D-alanyl-D-alanine carboxypeptidase [Aromatoleum aromaticum EbN1]
gi|56312739|emb|CAI07384.1| D-Ala-D-Ala carboxypeptidase 3 (S13) family [Aromatoleum
aromaticum EbN1]
Length = 482
Score = 36.5 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 11 AMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
A+ + P ++A + ++G + P NPAS+ KL+TA+
Sbjct: 40 ALAAAHIPQSAVALWVQA-------VDSGEPQLRVNAERPMNPASVMKLVTAFAALE 89
>gi|228984887|ref|ZP_04145057.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228774837|gb|EEM23233.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 370
Score = 36.5 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + AS+ K++ A + E K
Sbjct: 64 NGEVLTSINENKKLPLASMAKIVIAVEFAKQVSEGKISRDE 104
>gi|157884145|pdb|2UWX|A Chain A, Active Site Restructuring Regulates Ligand Recognition In
Class A Penicillin-Binding Proteins
Length = 494
Score = 36.5 bits (82), Expect = 6.5, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 38/145 (26%), Gaps = 15/145 (10%)
Query: 32 TLLDTNTGHVI-------AENYP-----DHPWNPASLTKLMTAY-VVFSFLKEKKAMLTT 78
L+D TG ++ + D +PA TK + AY + + +
Sbjct: 128 VLMDNQTGAILGFVGGRNYQENQNNHAFDTKRSPAXTTKPLLAYGIAIDQGLMGSETILS 187
Query: 79 PITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHM 138
+ ++ G + + + + K +++ M
Sbjct: 188 NYPTNFANGNPIMYANSKGTGMMTLGEALNYSWNIPAYW--TYRMLRENGVDVKGYMEKM 245
Query: 139 NNTSKNLGLSATHFMNAHGVVQHGH 163
G+ + V H
Sbjct: 246 GYEIPEYGIESLPMGGGIEVTVAQH 270
>gi|330859129|emb|CBX69483.1| hypothetical protein YEW_JC39970 [Yersinia enterocolitica W22703]
Length = 161
Score = 36.5 bits (82), Expect = 6.6, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD AS+TKLMT+ V+ ++ LT P
Sbjct: 77 PDSLIRIASITKLMTSEVMVKLAEDGTVKLTDP 109
>gi|294630438|ref|ZP_06708998.1| beta-lactamase [Streptomyces sp. e14]
gi|292833771|gb|EFF92120.1| beta-lactamase [Streptomyces sp. e14]
Length = 392
Score = 36.5 bits (82), Expect = 6.6, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ D TG + D S++K TA V ++ K L P
Sbjct: 33 VADVATGRPV---RADMRQRVGSISKTFTAVAVLQQVERGKVRLDDP 76
>gi|38155773|gb|AAR12666.1| beta-lactamase [Staphylococcus aureus]
Length = 179
Score = 36.5 bits (82), Expect = 6.6, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 12/134 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET---------NKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ +++IA+A++ + S N LDT +G + D +
Sbjct: 1 MKKLILLIAIALVLSACNSTSSHAKELNNLEKKYNANIGVYALDTKSGKE-VKFNADKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L + I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKVHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAE 125
+ S N I
Sbjct: 118 MKYSDNTANNKIIN 131
>gi|76786907|ref|YP_328739.1| hypothetical protein SAK_0012 [Streptococcus agalactiae A909]
gi|77405633|ref|ZP_00782722.1| protein of unknown function [Streptococcus agalactiae H36B]
gi|76561964|gb|ABA44548.1| conserved hypothetical protein [Streptococcus agalactiae A909]
gi|77175777|gb|EAO78557.1| protein of unknown function [Streptococcus agalactiae H36B]
Length = 428
Score = 36.5 bits (82), Expect = 6.6, Method: Composition-based stats.
Identities = 26/222 (11%), Positives = 53/222 (23%), Gaps = 16/222 (7%)
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99
+A D AS+ KL T Y +K K L + N +++P S G
Sbjct: 216 QTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSG 275
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ + + A +V N H +
Sbjct: 276 KLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVN--NQYDSMFQTQVDTISGMHWDM 333
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ + ++ + + + + K A
Sbjct: 334 KKRQISPQAAGKMMEAIYYQNGDIVNYLSKTDFDNTRIPKNIPVKVAHKIGD-------- 385
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
A + A+ + +Q I +I + +
Sbjct: 386 ---AYDYKHDAAIVYAEQPFIMIIF---TDKSSYDDITKIAD 421
>gi|300785357|ref|YP_003765648.1| beta-lactamase class C [Amycolatopsis mediterranei U32]
gi|299794871|gb|ADJ45246.1| beta-lactamase class C [Amycolatopsis mediterranei U32]
Length = 461
Score = 36.5 bits (82), Expect = 6.6, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+L+T TG E D + S+TK+ TA + + + L P
Sbjct: 36 EIIDRAAGVLNTGTG---VEADVDSLFQIGSITKVWTATLAMQLVDDGVLDLDQP 87
>gi|312140262|ref|YP_004007598.1| beta-lactamase [Rhodococcus equi 103S]
gi|311889601|emb|CBH48918.1| putative beta-lactamase [Rhodococcus equi 103S]
Length = 273
Score = 36.5 bits (82), Expect = 6.7, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++D + G + AS+TKL+ AY ++E L P
Sbjct: 11 PVDNASAAVVDGSRGVAHFG-DGQRIYPLASVTKLLCAYATLVAVEEGAVELDQP 64
>gi|325676991|ref|ZP_08156662.1| beta-lactamase [Rhodococcus equi ATCC 33707]
gi|325552153|gb|EGD21844.1| beta-lactamase [Rhodococcus equi ATCC 33707]
Length = 273
Score = 36.5 bits (82), Expect = 6.7, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
++D + G + AS+TKL+ AY ++E L P
Sbjct: 11 PVDNASAAVVDGSRGVAHFG-DGQRIYPLASVTKLLCAYATLVAVEEGAVELDQP 64
>gi|153825682|ref|ZP_01978349.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio cholerae MZO-2]
gi|149740619|gb|EDM54728.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio cholerae MZO-2]
Length = 487
Score = 36.5 bits (82), Expect = 6.7, Method: Composition-based stats.
Identities = 24/185 (12%), Positives = 52/185 (28%), Gaps = 7/185 (3%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+I + + Y L+ D E + PAS K++TA
Sbjct: 22 FLIASPIYAQTPLTAATTKLPQGARYSLLIEDAALQQNTLELNTHLYYPPASTQKILTAL 81
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
L ++ T + + ++ + T TL A+K +
Sbjct: 82 AAKLELGDEFRFHTDLMHLGQDWIIRFSGDPTLTTADLTTLLKAMK----AQSGGSIEGD 137
Query: 124 AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQ 183
+ + + LG+ + +A + G+ A + + P+
Sbjct: 138 LWLDNSVFNGYERAVGWPWDILGVCYSAPASAINLD--GNCIQASIYTEPQGKTRVYVPE 195
Query: 184 YMHYF 188
+
Sbjct: 196 HYPVH 200
>gi|75758994|ref|ZP_00739103.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74493529|gb|EAO56636.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 339
Score = 36.1 bits (81), Expect = 6.8, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + AS K++ A + E K
Sbjct: 32 KNGEVLTSINENKKLPLASTAKIVIAVEFAKQVSEGKISRDE 73
>gi|329851458|ref|ZP_08266215.1| beta-lactamase [Asticcacaulis biprosthecum C19]
gi|328840304|gb|EGF89876.1| beta-lactamase [Asticcacaulis biprosthecum C19]
Length = 157
Score = 36.1 bits (81), Expect = 6.8, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 20/95 (21%)
Query: 3 QFLVIIAMAMLSNIFPFLS--------IAETNKLPYYTLLDTNTGHVIAE-----NY--- 46
Q A+LS+ P + + + G V
Sbjct: 2 QLTAFALYALLSSAIPASADIDAAIHKAMADTGAKGLAIAVIDNGQVAYAQAYGIRNTNN 61
Query: 47 ----PDHPWNPASLTKLMTAYVVFSFLKEKKAMLT 77
PD ASLTK + AY + + K L
Sbjct: 62 DPLTPDTIMYGASLTKTVMAYTALQLVDQGKLNLD 96
>gi|124008037|ref|ZP_01692736.1| beta-lactamase [Microscilla marina ATCC 23134]
gi|123986451|gb|EAY26257.1| beta-lactamase [Microscilla marina ATCC 23134]
Length = 301
Score = 36.1 bits (81), Expect = 6.8, Method: Composition-based stats.
Identities = 15/153 (9%), Positives = 41/153 (26%), Gaps = 6/153 (3%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
+ S+ K A V + + K L I I++ + +
Sbjct: 56 SINGNKRLPMQSVFKYHLALAVLHQVDQGKFSLNEKIAITQKMVNAYSHLWSPLRKKYPN 115
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN------AHG 157
I++ + + + + + + +G+ ++ A
Sbjct: 116 GAKLTLAEILRYTVAWSDNLGCDVLFKLIGGTKVVESYVHKIGVKDIAIVHNEIVMQAKW 175
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQI 190
Q+ ++TTA + + +
Sbjct: 176 KHQYENWTTANAANQVLQLFFENNDNLLSTKSY 208
>gi|239816205|ref|YP_002945115.1| beta-lactamase [Variovorax paradoxus S110]
gi|239802782|gb|ACS19849.1| Beta-lactamase [Variovorax paradoxus S110]
Length = 299
Score = 36.1 bits (81), Expect = 6.9, Method: Composition-based stats.
Identities = 33/235 (14%), Positives = 68/235 (28%), Gaps = 10/235 (4%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
DT TG ++ + S K+M + + + + +L ++ +++
Sbjct: 59 FDTATGAR-VQHRATERFPMCSTFKMMASAAILARSSREPGLLEQRVSYARSDILPNSPI 117
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ G M + I S N A + + +F + + + L T
Sbjct: 118 TEKNLGQGMAVSALCAATIQYSDNAAANLLMKILGGPSAVTEFARSIGDAVFRLDRWETE 177
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+A + A L + D Q++ + A
Sbjct: 178 LNSAIPGDPRDTTSPEAMAASLQRLVLGDGLAAAQRSQLEAWLLGNTTGATRIRAGVPAD 237
Query: 212 GADGMKTGF-TCASGFNIVASAIQGDQSLIAVIL------GALDRNTRNKVSASL 259
G KTG + + +I L+ + A RN +A +
Sbjct: 238 WKVGDKTGAGSYGTVNDIGVLWPPAGAPLVMAVYLTFPTPDAPGRNDVIASAARI 292
>gi|171692625|ref|XP_001911237.1| hypothetical protein [Podospora anserina S mat+]
gi|170946261|emb|CAP73062.1| unnamed protein product [Podospora anserina S mat+]
Length = 408
Score = 36.1 bits (81), Expect = 6.9, Method: Composition-based stats.
Identities = 12/90 (13%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
+ + AS TKL+T + + L +P TIS+ + +
Sbjct: 55 NDIFYLASATKLITTIAALQAIDDGHLSLDSPDTISQ-FAPELVNRPILSPDGATLTPPT 113
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQH 137
++ + + + + L + +
Sbjct: 114 NRITLRQLLSHTSGLAYHFLHPYLSAWREK 143
>gi|325697130|gb|EGD39017.1| peptidase family S11 [Streptococcus sanguinis SK160]
Length = 359
Score = 36.1 bits (81), Expect = 6.9, Method: Composition-based stats.
Identities = 39/222 (17%), Positives = 67/222 (30%), Gaps = 20/222 (9%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 126 DLTTGKT-FAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 184
Query: 95 TFKKGST--MTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
+ M + + + +V S N A A+AE L EK + + G S
Sbjct: 185 NYVGAFNGAMRISDMQEYSLVYSENTPAYALAERLGGMEKAY-----DMFSRYGQSKADI 239
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ TT + + + +Y G G+ Y + +
Sbjct: 240 KTISR---ENNKTTTDYYIQVLEYLSKNQEKYKDILYYIGESFPGEYYKRYLRDITIY-- 294
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIA---VILGALDRNT 251
K G+ + N+ A ++ +IA LG +
Sbjct: 295 ---QKPGYVREAL-NVDALVMEEKHYIIALYTAYLGGSTEAS 332
>gi|289449407|ref|YP_003475640.1| putative lipoprotein [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289183954|gb|ADC90379.1| putative lipoprotein [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 382
Score = 36.1 bits (81), Expect = 6.9, Method: Composition-based stats.
Identities = 21/183 (11%), Positives = 48/183 (26%), Gaps = 3/183 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP-ITISKNASEYPPSN 93
D +G E P+ + AS KL A ++ + +N
Sbjct: 164 DIRSGER-YEYNPEQRYMAASCMKLGMAMACAQLVERGILNWNMLIPCVPDEVDYIYQAN 222
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
G +L + L + S N + ++ +++ + + T
Sbjct: 223 ELAALGEKCSLRDLLSKALRYSNNSATSVLFHFFKINGRQLHHYIDEATGMHYAADTTMS 282
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
G+ +R+ + + E+ N + +
Sbjct: 283 AREGI-NLLAGLVQNPNGCTGYRLIINEIHQSTWNNYLTRELPRNICANKYGEMNGYTNE 341
Query: 214 DGM 216
G+
Sbjct: 342 LGI 344
>gi|229046728|ref|ZP_04192372.1| D-stereospecific peptide hydrolase [Bacillus cereus AH676]
gi|229110470|ref|ZP_04240040.1| D-stereospecific peptide hydrolase [Bacillus cereus Rock1-15]
gi|296503539|ref|YP_003665239.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
gi|228672954|gb|EEL28228.1| D-stereospecific peptide hydrolase [Bacillus cereus Rock1-15]
gi|228724606|gb|EEL75919.1| D-stereospecific peptide hydrolase [Bacillus cereus AH676]
gi|296324591|gb|ADH07519.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis BMB171]
Length = 388
Score = 36.1 bits (81), Expect = 6.9, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEK 72
I S + D +T + D+ + S+TK TA V + E
Sbjct: 63 AVGILAKASNNGKTSSFTAGVADLSTKKPV---NSDYRFRIGSVTKTFTATTVLQLVGEN 119
Query: 73 KAMLTTP 79
+ L P
Sbjct: 120 RLQLDDP 126
>gi|295822171|gb|ADG36739.1| extended-spectrum class A beta-lactamase [Rahnella sp. 285-Celery]
Length = 218
Score = 36.1 bits (81), Expect = 7.0, Method: Composition-based stats.
Identities = 33/203 (16%), Positives = 55/203 (27%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + KK +LT + + K+ + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKESEVKKNLLTQHVGLKKSDLVNYNPITEKHLNEGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ + S N + E L K L T +
Sbjct: 65 IGELAAAALQYSDNTAMNKLIEHLGGPHKVTDYARTLGDNTFRLDRTEPTLNTAIPGDER 124
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGFT 221
TT+ LS + T + + +E G KTG
Sbjct: 125 DTTSPRAMALSLQHATLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWIVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ L+ V
Sbjct: 185 DYGTTNDIAVIWPENKAPLVLVT 207
>gi|317049065|ref|YP_004116713.1| beta-lactamase [Pantoea sp. At-9b]
gi|316950682|gb|ADU70157.1| beta-lactamase [Pantoea sp. At-9b]
Length = 389
Score = 36.1 bits (81), Expect = 7.0, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D ASL+KLMT+ V+ + + L P
Sbjct: 80 DSLIRIASLSKLMTSEVMVKMAERGQIRLDDP 111
>gi|226944008|ref|YP_002799081.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Azotobacter vinelandii DJ]
gi|226718935|gb|ACO78106.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Azotobacter vinelandii DJ]
Length = 486
Score = 36.1 bits (81), Expect = 7.0, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 46 YPDHPWNPASLTKLMTAYVVFS 67
D P NPAS KL+T Y
Sbjct: 65 NADVPLNPASTMKLVTTYAALE 86
>gi|229031204|ref|ZP_04187212.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
gi|228730100|gb|EEL81072.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH1271]
Length = 343
Score = 36.1 bits (81), Expect = 7.1, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 45/172 (26%), Gaps = 4/172 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
L+ V+ P+ AS KL+ A + E K ++ +S N
Sbjct: 25 SALLV-KRNDKVVYSVNPNVVLPVASTMKLIVALEYTKQVTEGKIDPSS--FVSINDINR 81
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+T K + +A+ + K L
Sbjct: 82 YYVPNTDGGAQDRWQRYLQKTDKITEGAVSLEEVAKGMVKFSSNANAEYLMEVLGLDNIN 141
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ + + H + + + + + K E+ ++Y
Sbjct: 142 RNL-QSLSLPAHQPLFPIVSSLYIPGYLHKELHVPKYKIEKKLKEMSQEQYR 192
>gi|238788607|ref|ZP_04632399.1| Penicillin-binding protein ampH [Yersinia frederiksenii ATCC 33641]
gi|238723202|gb|EEQ14850.1| Penicillin-binding protein ampH [Yersinia frederiksenii ATCC 33641]
Length = 380
Score = 36.1 bits (81), Expect = 7.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD AS+TKLMT+ V+ ++ LT P
Sbjct: 81 PDSLIRIASITKLMTSEVMVKLAEDGTVKLTDP 113
>gi|296393398|ref|YP_003658282.1| hypothetical protein Srot_0978 [Segniliparus rotundus DSM 44985]
gi|296180545|gb|ADG97451.1| hypothetical protein Srot_0978 [Segniliparus rotundus DSM 44985]
Length = 300
Score = 36.1 bits (81), Expect = 7.2, Method: Composition-based stats.
Identities = 35/238 (14%), Positives = 60/238 (25%), Gaps = 38/238 (15%)
Query: 15 NIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH--PWNPASLTKLMTAYVVFSFLKEK 72
+ +A Y L D TG V P AS KL A +F+ +
Sbjct: 69 VVQANALVAAQAPGAGYVLRDRATGGVY--RNPHAGDSVYAASTIKLAMAVDLFTRDRAG 126
Query: 73 KAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK 132
L+ + ++ ++ S + A +
Sbjct: 127 LVTLSAAD------------------------RSLIQNMLHSSDDGAADTLWMKYW---- 158
Query: 133 KFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKG 192
HM + T + G Y A + F
Sbjct: 159 -GEDHMAFLNDFPNYGMTDLRSQGGYDGIDVYWGAMSCSPNDLDRLMQFVLEKMDPADTA 217
Query: 193 LEIKGKKYPNTNWAVGT---FLGAD-GMKTGFTCASGFNIVASAIQG-DQSLIAVILG 245
+ + + N G A G K G++ G+ + + G Q I I+
Sbjct: 218 YIVNEMQNVDPNQQWGVWGAGPSAHPGDKNGWSGIGGWVLHSVGFAGLGQRYILAIMN 275
>gi|83590885|ref|YP_430894.1| peptidoglycan-binding LysM [Moorella thermoacetica ATCC 39073]
gi|83573799|gb|ABC20351.1| Peptidoglycan-binding LysM [Moorella thermoacetica ATCC 39073]
Length = 333
Score = 36.1 bits (81), Expect = 7.2, Method: Composition-based stats.
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPP 91
D +G D P AS KL + S + + +T +
Sbjct: 107 DLASGQS-FGINADTPLPAASTVKLPAVLFINSLVDQGVLDWQQKLTYNSATDYQGG 162
>gi|238786269|ref|ZP_04630212.1| Penicillin-binding protein ampH [Yersinia bercovieri ATCC 43970]
gi|238712813|gb|EEQ04882.1| Penicillin-binding protein ampH [Yersinia bercovieri ATCC 43970]
Length = 380
Score = 36.1 bits (81), Expect = 7.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD AS+TKLMT+ V+ + LT P
Sbjct: 81 PDSLIRIASITKLMTSEVMVKLADDGTVKLTDP 113
>gi|322386422|ref|ZP_08060051.1| beta-lactamase [Streptococcus cristatus ATCC 51100]
gi|321269508|gb|EFX52439.1| beta-lactamase [Streptococcus cristatus ATCC 51100]
Length = 427
Score = 36.1 bits (81), Expect = 7.2, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
TG A PD AS+TK+ Y L L
Sbjct: 212 LETGKE-AGINPDQQMYSASVTKIPYLYYAQEQLNNHSLSLDKK 254
>gi|268592244|ref|ZP_06126465.1| beta-lactamase [Providencia rettgeri DSM 1131]
gi|291312293|gb|EFE52746.1| beta-lactamase [Providencia rettgeri DSM 1131]
Length = 332
Score = 36.1 bits (81), Expect = 7.2, Method: Composition-based stats.
Identities = 15/115 (13%), Positives = 32/115 (27%), Gaps = 5/115 (4%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTT--PITISKNASEYPPSNSTFKKGSTMTLD 105
D P AS TK TA + + +K + I + + + L
Sbjct: 45 DTPLRIASNTKTFTAAAILRLAEMEKLSIDDAISEYIDPQYNTLLSTQYNTHAITIRHLL 104
Query: 106 NALKLLIVKSAND---IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
L+ + D + + ++ +M + + + G
Sbjct: 105 EHSSGLLDHADGDYLKAVLKQPNYVWSRTEQIEMYMRKQFPTFSPAKSFIYSDTG 159
>gi|254512293|ref|ZP_05124360.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacteraceae bacterium KLH11]
gi|221536004|gb|EEE38992.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Rhodobacteraceae bacterium KLH11]
Length = 492
Score = 36.1 bits (81), Expect = 7.2, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
+ D TG + PAS+ K +TA
Sbjct: 61 VADAETGTPLEVFGEGRSLPPASVAKALTALYALD 95
>gi|254422643|ref|ZP_05036361.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Synechococcus sp. PCC 7335]
gi|196190132|gb|EDX85096.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Synechococcus sp. PCC 7335]
Length = 504
Score = 36.1 bits (81), Expect = 7.2, Method: Composition-based stats.
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 42 IAENYPDHPWNPASLTKLMTAYVVFSF 68
+ PAS KL+T
Sbjct: 90 LYARNAQEKLVPASNVKLLTTAAALQA 116
>gi|125973684|ref|YP_001037594.1| Beta-lactamase class A-like protein [Clostridium thermocellum ATCC
27405]
gi|256005767|ref|ZP_05430720.1| Beta-lactamase class A-like protein [Clostridium thermocellum DSM
2360]
gi|281417840|ref|ZP_06248860.1| Beta-lactamase class A-like protein [Clostridium thermocellum JW20]
gi|125713909|gb|ABN52401.1| Beta-lactamase class A-like protein [Clostridium thermocellum ATCC
27405]
gi|255990267|gb|EEU00396.1| Beta-lactamase class A-like protein [Clostridium thermocellum DSM
2360]
gi|281409242|gb|EFB39500.1| Beta-lactamase class A-like protein [Clostridium thermocellum JW20]
gi|316940121|gb|ADU74155.1| hypothetical protein Clo1313_1091 [Clostridium thermocellum DSM
1313]
Length = 383
Score = 36.1 bits (81), Expect = 7.2, Method: Composition-based stats.
Identities = 28/236 (11%), Positives = 62/236 (26%), Gaps = 23/236 (9%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
+D +G + AS K+ V+ +++ T + ++
Sbjct: 154 VDLESGKE-FGINDTEEFFAASTFKIPLNLYVYDMIRKGMLDPMTSLEYTEEDF--EGGT 210
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM 153
+ +K L+ S L + K + + LG
Sbjct: 211 GIIWNNESFGKTFTIKELLRLSIVYSDNVAVNMLLRCVGKAN--VKEYMRRLGGVVV--- 265
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+ + RDMA+ + + + + K+ + +
Sbjct: 266 -----DDGKNVSCPRDMAMYLKEVYELSENGDPWGRELVQNMINTKFYDRLPVLLPKNLK 320
Query: 214 DGMKTG-FTCASGFNIVASAIQGDQSLIAVIL------GALDRNTRNKVSASLLSM 262
KTG +T + A + I V++ G +S +
Sbjct: 321 IAHKTGNYTGVVHDVGIVYAEK---PYIVVVMTKNVKNGQSANKAIANISKMIYDY 373
>gi|22536198|ref|NP_687049.1| hypothetical protein SAG0013 [Streptococcus agalactiae 2603V/R]
gi|25010087|ref|NP_734482.1| hypothetical protein gbs0012 [Streptococcus agalactiae NEM316]
gi|76797981|ref|ZP_00780240.1| conserved hypothetical protein [Streptococcus agalactiae 18RS21]
gi|77414472|ref|ZP_00790622.1| protein of unknown function [Streptococcus agalactiae 515]
gi|22533015|gb|AAM98921.1|AE014191_13 protein of unknown function [Streptococcus agalactiae 2603V/R]
gi|23094438|emb|CAD45657.1| unknown [Streptococcus agalactiae NEM316]
gi|76586661|gb|EAO63160.1| conserved hypothetical protein [Streptococcus agalactiae 18RS21]
gi|77159482|gb|EAO70643.1| protein of unknown function [Streptococcus agalactiae 515]
gi|319746209|gb|EFV98478.1| beta-lactamase [Streptococcus agalactiae ATCC 13813]
Length = 428
Score = 36.1 bits (81), Expect = 7.2, Method: Composition-based stats.
Identities = 26/222 (11%), Positives = 53/222 (23%), Gaps = 16/222 (7%)
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99
+A D AS+ KL T Y +K K L + N +++P S G
Sbjct: 216 QTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSG 275
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ + + A +V N H +
Sbjct: 276 KLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVN--NQYDSMFQTQVDTISGMHWDM 333
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ + ++ + + + + K A
Sbjct: 334 KKRQISPQAAGKMMEAIYYQNGDIVNYLSKTDFDNTRIPKNIPVKVAHKIGD-------- 385
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
A + A+ + +Q I +I + +
Sbjct: 386 ---AYDYKHDAAIVYAEQPFIMIIF---TDKSSYDDITKIAD 421
>gi|289449673|ref|YP_003475286.1| hypothetical protein HMPREF0868_0983 [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184220|gb|ADC90645.1| conserved hypothetical protein [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 394
Score = 36.1 bits (81), Expect = 7.3, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP-ITISKNASEYPPSNSTFKKGSTMTL 104
PD+ AS KL A ++ + E + L T S + + G +L
Sbjct: 177 NPDYARTAASTIKLPLALILLDQIAEGEFSLQTVLTYESDDYEGGSGTLQYSPIGGHYSL 236
Query: 105 DNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNL 145
L LIV+S N A + L + + L
Sbjct: 237 KQLLDFLIVESDNVAARMLMRWLHTYTGHQAMPLIQHTYGL 277
>gi|318606407|emb|CBY27905.1| penicillin-binding protein AmpH [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 376
Score = 36.1 bits (81), Expect = 7.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD AS+TKLMT+ V+ ++ LT P
Sbjct: 77 PDSLIRIASITKLMTSEVMVKLAEDGTVKLTDP 109
>gi|300693088|ref|YP_003749061.1| oxacillin hydrolase (class-d beta-lactamase) signal peptide protein
[Ralstonia solanacearum PSI07]
gi|299075125|emb|CBJ34407.1| putative oxacillin hydrolase (Class-d beta-lactamase) signal
peptide protein [Ralstonia solanacearum PSI07]
Length = 272
Score = 36.1 bits (81), Expect = 7.3, Method: Composition-based stats.
Identities = 14/122 (11%), Positives = 32/122 (26%), Gaps = 1/122 (0%)
Query: 32 TLLDTNTGH-VIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ D TG ++ E PAS K+ + + + K T +
Sbjct: 28 LVADAATGQPIVQEGQCGERVTPASTFKIALSLMGYDAGFLKDEHAPTLAFKPGDPDWGG 87
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ + + + + A + + + +N GL +
Sbjct: 88 AAWHEPTDPARWLQYSVVWYSQRIAHALGAERFQSYVRQFGYGNQDVAGDPGRNNGLDRS 147
Query: 151 HF 152
Sbjct: 148 WI 149
>gi|268324167|emb|CBH37755.1| conserved hypothetical protein, beta lactamase family [uncultured
archaeon]
Length = 463
Score = 36.1 bits (81), Expect = 7.3, Method: Composition-based stats.
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + S TK+ T+ ++ ++E + L P
Sbjct: 81 NENTIYEIGSTTKVFTSLILADMVEEGEISLDDP 114
>gi|300771771|ref|ZP_07081642.1| possible beta-lactamase [Sphingobacterium spiritivorum ATCC 33861]
gi|300761157|gb|EFK57982.1| possible beta-lactamase [Sphingobacterium spiritivorum ATCC 33861]
Length = 300
Score = 36.1 bits (81), Expect = 7.4, Method: Composition-based stats.
Identities = 14/142 (9%), Positives = 32/142 (22%), Gaps = 16/142 (11%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + AS+ K+ VF+ + + + + L
Sbjct: 59 NADSIFPTASIIKVPILAGVFNKIGKGELKYNDKF-----------VYRQSRVYGGSGLM 107
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
K I + +A + + Q + G M+ G+ +
Sbjct: 108 QFFKDSIETDLSTMAALMIGYSDNVTSIWCQELAE-----GTKINELMDELGLPNTRVNS 162
Query: 166 TARDMAILSWRIKTDFPQYMHY 187
+ +
Sbjct: 163 RTAGREAIWKKYGWGHTTPREM 184
>gi|238796811|ref|ZP_04640316.1| Penicillin-binding protein ampH [Yersinia mollaretii ATCC 43969]
gi|238719299|gb|EEQ11110.1| Penicillin-binding protein ampH [Yersinia mollaretii ATCC 43969]
Length = 380
Score = 36.1 bits (81), Expect = 7.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD AS+TKLMT+ V+ + LT P
Sbjct: 81 PDSLIRIASITKLMTSEVMVKLADDGTVKLTDP 113
>gi|77407719|ref|ZP_00784474.1| protein of unknown function [Streptococcus agalactiae COH1]
gi|77173718|gb|EAO76832.1| protein of unknown function [Streptococcus agalactiae COH1]
Length = 428
Score = 36.1 bits (81), Expect = 7.4, Method: Composition-based stats.
Identities = 26/222 (11%), Positives = 53/222 (23%), Gaps = 16/222 (7%)
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99
+A D AS+ KL T Y +K K L + N +++P S G
Sbjct: 216 QTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYDPSGSG 275
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ + + A +V N H +
Sbjct: 276 KLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVN--NQYDSMFQTQVDTISGMHWDM 333
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ + ++ + + + + K A
Sbjct: 334 KKRQISPQAAGKMMEAIYYQNGDIVNYLSKTDFDNTRIPKNIPVKVAHKIGD-------- 385
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
A + A+ + +Q I +I + +
Sbjct: 386 ---AYDYKHDAAIVYAEQPFIMIIF---TDKSSYDDITKIAD 421
>gi|325694052|gb|EGD35970.1| peptidase family S11 [Streptococcus sanguinis SK150]
Length = 386
Score = 36.1 bits (81), Expect = 7.5, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 153 DLTTGKT-FAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 211
Query: 95 TF 96
+
Sbjct: 212 NY 213
>gi|315649054|ref|ZP_07902147.1| hypothetical protein PVOR_27759 [Paenibacillus vortex V453]
gi|315275489|gb|EFU38844.1| hypothetical protein PVOR_27759 [Paenibacillus vortex V453]
Length = 676
Score = 36.1 bits (81), Expect = 7.5, Method: Composition-based stats.
Identities = 10/83 (12%), Positives = 21/83 (25%), Gaps = 15/83 (18%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAEN-------------YPDHPWNPAS 55
+ +F + ++ G V+ + AS
Sbjct: 63 LLTFADPLFADKMKKFNVAGSNFVVV--KDGKVLVSKGYGYADKKKQIPVDSQTVFQIAS 120
Query: 56 LTKLMTAYVVFSFLKEKKAMLTT 78
++K TA + + K L
Sbjct: 121 ISKTFTALAAMQLVDQGKIQLDH 143
>gi|228964786|ref|ZP_04125892.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228794859|gb|EEM42359.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 363
Score = 36.1 bits (81), Expect = 7.5, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + AS K++ A + E K
Sbjct: 56 KNGEVLTSINENKKLPLASTAKIVIAVEFAKQVSEGKISRDE 97
>gi|325690135|gb|EGD32139.1| peptidase family S11 [Streptococcus sanguinis SK115]
Length = 386
Score = 36.1 bits (81), Expect = 7.5, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 153 DLTTGKT-FAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 211
Query: 95 TF 96
+
Sbjct: 212 NY 213
>gi|297192906|ref|ZP_06910304.1| penicillin binding protein [Streptomyces pristinaespiralis ATCC
25486]
gi|297151550|gb|EFH31228.1| penicillin binding protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 528
Score = 36.1 bits (81), Expect = 7.5, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 19/75 (25%), Gaps = 17/75 (22%)
Query: 9 AMAMLSNIFPFLSIAETNKLPYY---TLLD--------------TNTGHVIAENYPDHPW 51
LS P + L L D TG + +
Sbjct: 21 LACTLSWSSPAGAGPSDTGLKGALDKVLADPRMDGGAVSVVVADAATGERLYQRDSGDRL 80
Query: 52 NPASLTKLMTAYVVF 66
PAS TKL T+
Sbjct: 81 MPASNTKLATSAAAM 95
>gi|312130821|ref|YP_003998161.1| beta-lactamase [Leadbetterella byssophila DSM 17132]
gi|311907367|gb|ADQ17808.1| beta-lactamase [Leadbetterella byssophila DSM 17132]
Length = 433
Score = 36.1 bits (81), Expect = 7.6, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 39 GHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISK 84
G + + +N ASLTK +TA V + + + L TP+
Sbjct: 159 GKFYNNSNAESRFNVASLTKPITALAVLKLVDKGEWDLDTPLYTYW 204
>gi|228900377|ref|ZP_04064606.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
4222]
gi|228859264|gb|EEN03695.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis IBL
4222]
Length = 363
Score = 36.1 bits (81), Expect = 7.6, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + AS K++ A + E K
Sbjct: 56 KNGEVLTSINENKKLPLASTAKIVIAVEFAKQVSEGKISRDE 97
>gi|55794120|gb|AAV65950.1| penicillinase Cad-1 [Carnobacterium divergens]
Length = 304
Score = 36.1 bits (81), Expect = 7.6, Method: Composition-based stats.
Identities = 33/214 (15%), Positives = 56/214 (26%), Gaps = 6/214 (2%)
Query: 34 LDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN 93
LDT T V D + AS K + +V + + L I I K
Sbjct: 66 LDTETNKV-VAYNEDQRFAFASTYKALAGGLVLNESSWDE--LNQTIMIKKEDLVTYSPI 122
Query: 94 STFKKGSTMTLDNALKLLIVKSANDIAVAIAE--SLCKTEKKFVQHMNNTSKNLGLSATH 151
+ M L + I S N + + K + + + + + + T
Sbjct: 123 TEKYVDIGMPLKELISAAIQYSDNTAGNFLFKQLGGPKGFQTKLAELGDYTTDSSRFETE 182
Query: 152 FMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
A T L K I+ A
Sbjct: 183 LNEATPGDIRDTSTPKEIALDLKKLAIDHKLPTDKLEFYKKQLIENTTGSKLIRAGIPSD 242
Query: 212 GADGMKTGF-TCASGFNIVASAIQGDQSLIAVIL 244
G K+G + + +I + ++ VI
Sbjct: 243 VIVGDKSGAGSYGTRNDIAVLYPPNRKPIVLVIF 276
>gi|319953544|ref|YP_004164811.1| hypothetical protein Celal_2016 [Cellulophaga algicola DSM 14237]
gi|319422204|gb|ADV49313.1| hypothetical protein Celal_2016 [Cellulophaga algicola DSM 14237]
Length = 514
Score = 36.1 bits (81), Expect = 7.7, Method: Composition-based stats.
Identities = 22/174 (12%), Positives = 55/174 (31%), Gaps = 3/174 (1%)
Query: 138 MNNTSKNLGLSATHFMNAHGVVQHGHYT-TARDMAILSWRIKTDFPQYMHYFQIKGLEIK 196
M + S + A G+ H + L + +K +I+
Sbjct: 338 MADVLVQSMNSGFDAVIAWGLDDAMHTNGDTGEKNQLKKWGMWNILGKELTGDVKEEDIR 397
Query: 197 GKKYPNTNWAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVS 256
Y + +KT + +VA + +V+ + T +
Sbjct: 398 PWFYTWSILTRYFTNDMKIVKTTGLDINKVRMVAGWSASNDVTFSVVNNSDKEATFYLET 457
Query: 257 ASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEV--PNISEEVCTTQKEIINYNT 308
+L + F + + + + + + + N + + +E++ K ++ Y T
Sbjct: 458 ENLKNKSFKKYSYSENNRPVDSNNFPKAVQNNLSFTSGTEQITIPAKSVLLYTT 511
>gi|313890785|ref|ZP_07824410.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
20026]
gi|313120886|gb|EFR44000.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
20026]
Length = 348
Score = 36.1 bits (81), Expect = 7.7, Method: Composition-based stats.
Identities = 20/177 (11%), Positives = 42/177 (23%), Gaps = 7/177 (3%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D +G P S KL +V +++ K L I+ EY +
Sbjct: 113 DLESGET-FSMNDRQPMTAGSTYKLPLNMLVVDEVEKGKYNLEQRFDITDTTYEYDREHM 171
Query: 95 TFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMN 154
+ + + ++ + + G S +
Sbjct: 172 AYVNQFAGAMSISEMQEYSLLYSE---NTPAYALADRLGGMDKAYKKFRRYGKSKSEIKT 228
Query: 155 AHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL 211
+ G+ TT + + +Y G Y + +
Sbjct: 229 IL---EKGNKTTTDYYIQVLDYLWKHKNKYKDILYYIRESFPGDYYKTYLPDITIYQ 282
>gi|229512894|ref|ZP_04402361.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
gi|229350143|gb|EEO15096.1| D-alanyl-D-alanine carboxypeptidase [Vibrio cholerae TMA 21]
Length = 487
Score = 36.1 bits (81), Expect = 7.7, Method: Composition-based stats.
Identities = 23/190 (12%), Positives = 44/190 (23%), Gaps = 13/190 (6%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+I + + Y L+ D E + PAS K++TA
Sbjct: 22 FLIASPIYAQTPLTAATTKLPQGARYSLLIEDAALQQNTLELNTHLYYPPASTQKILTAL 81
Query: 64 VVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAI 123
K L + G L L+ I
Sbjct: 82 AA-------KLELGDEFRFHTDLMHSGQDWIIRFSGDPTLTTADLTTLLKAMKAQSGGRI 134
Query: 124 ---AESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTD 180
+ + + LG+ + +A + G+ A + +
Sbjct: 135 EGDLWLDNSVFSGYERAVGWPWDILGVCYSAPASAINLD--GNCIQASIYTEPQGKTRVY 192
Query: 181 FPQYMHYFQI 190
P++
Sbjct: 193 VPEHYPVHAQ 202
>gi|228938908|ref|ZP_04101508.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228971790|ref|ZP_04132411.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228978398|ref|ZP_04138775.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
Bt407]
gi|228781415|gb|EEM29616.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
Bt407]
gi|228787880|gb|EEM35838.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228820757|gb|EEM66782.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326939409|gb|AEA15305.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 363
Score = 36.1 bits (81), Expect = 7.7, Method: Composition-based stats.
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 37 NTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G ++ + AS K++ A + E K
Sbjct: 56 KNGEILTSINENKKLPLASTAKIVIAVEFAKQVSEGKISRDE 97
>gi|270300475|gb|ACZ69281.1| Beta-lactamase [Staphylococcus aureus]
Length = 281
Score = 36.1 bits (81), Expect = 7.8, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 17/165 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAE----TNKLPY-----YTLLDTNTGHVIAENYPDHPW 51
M++ + +IA+A++ + S + Y LDT +G + D +
Sbjct: 1 MKKLIFLIAIALVLSACNSNSTHAKKLNDLEKKYNAHIGVYALDTKSGKE-VKFNSDKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L I I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQIPYN--KLNKKIHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAH 156
+ S N I + + ++ + K LG T+ +
Sbjct: 118 MTYSDNTANNKIIKEI-----GGIKKVKQRLKELGDKVTNPVRYE 157
>gi|22298918|ref|NP_682165.1| D-alanyl-D-alanine carboxypeptidase [Thermosynechococcus
elongatus BP-1]
gi|22295099|dbj|BAC08927.1| D-alanyl-D-alanine carboxypeptidase [Thermosynechococcus
elongatus BP-1]
Length = 465
Score = 36.1 bits (81), Expect = 7.8, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 19 FLSIAETNKLPYY------TLL-DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+IA+ + P + ++ D +G V+ + + + AS KL T +
Sbjct: 31 ARAIAQEIQNPQWQRGQWGIVVEDLRSGEVLYNHQGEKLFLVASNVKLTTVAAALDY 87
>gi|300777713|ref|ZP_07087571.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Chryseobacterium gleum ATCC 35910]
gi|300503223|gb|EFK34363.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Chryseobacterium gleum ATCC 35910]
Length = 457
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 14/80 (17%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLP-------------YYTLLDTNTGHVIAENYP 47
M++ L ++ +++ ++ + + D G++I E
Sbjct: 1 MKKTLAVLTLSVQIVAAQNIAQKLDKATKDLMDSSGAISSGLSFYVSD-ENGNLIYEYQG 59
Query: 48 DHPWNPASLTKLMTAYVVFS 67
+ + AS K+ TA
Sbjct: 60 NKGLSTASTQKIFTAGAALE 79
>gi|332366017|gb|EGJ43773.1| peptidase family S11 [Streptococcus sanguinis SK1059]
Length = 279
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 46 DLTTGKT-FAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 104
Query: 95 TF 96
+
Sbjct: 105 NY 106
>gi|332363479|gb|EGJ41262.1| peptidase family S11 [Streptococcus sanguinis SK355]
Length = 386
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 153 DLTTGKT-FAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 211
Query: 95 TF 96
+
Sbjct: 212 NY 213
>gi|328945518|gb|EGG39669.1| peptidase family S11 [Streptococcus sanguinis SK1087]
Length = 386
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 153 DLTTGKT-FAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 211
Query: 95 TF 96
+
Sbjct: 212 NY 213
>gi|324995346|gb|EGC27258.1| peptidase family S11 [Streptococcus sanguinis SK678]
Length = 386
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 153 DLTTGKT-FAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 211
Query: 95 TF 96
+
Sbjct: 212 NY 213
>gi|324993343|gb|EGC25263.1| peptidase family S11 [Streptococcus sanguinis SK405]
gi|327461616|gb|EGF07947.1| peptidase family S11 [Streptococcus sanguinis SK1]
gi|327473336|gb|EGF18756.1| peptidase family S11 [Streptococcus sanguinis SK408]
gi|327489474|gb|EGF21267.1| peptidase family S11 [Streptococcus sanguinis SK1058]
Length = 386
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 153 DLTTGKT-FAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 211
Query: 95 TF 96
+
Sbjct: 212 NY 213
>gi|324990605|gb|EGC22541.1| peptidase family S11 [Streptococcus sanguinis SK353]
Length = 359
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 126 DLTTGKT-FAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 184
Query: 95 TF 96
+
Sbjct: 185 NY 186
>gi|323352676|ref|ZP_08087646.1| peptidase family S11 [Streptococcus sanguinis VMC66]
gi|322121712|gb|EFX93458.1| peptidase family S11 [Streptococcus sanguinis VMC66]
gi|327458702|gb|EGF05050.1| peptidase family S11 [Streptococcus sanguinis SK1057]
gi|332361701|gb|EGJ39505.1| peptidase family S11 [Streptococcus sanguinis SK1056]
Length = 386
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 153 DLTTGKT-FAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 211
Query: 95 TF 96
+
Sbjct: 212 NY 213
>gi|295822239|gb|ADG36773.1| extended-spectrum class A beta-lactamase [Rahnella sp. 91-Salad]
gi|295822243|gb|ADG36775.1| extended-spectrum class A beta-lactamase [Rahnella genomosp. 2]
Length = 218
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 33/203 (16%), Positives = 55/203 (27%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + KK +LT + + K+ + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKESEVKKNLLTQHVALKKSDLVNYNPITEKHLNEGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ + S N + E L K L T +
Sbjct: 65 IGELAAAALQYSDNTAMNKLIEHLGGPHKVTDYARTLGDNTFRLDRTEPTLNTAIPGDER 124
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGFT 221
TT+ LS + T + + +E G KTG
Sbjct: 125 DTTSPRAMALSLQHATLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWIVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ L+ V
Sbjct: 185 DYGTTNDIAVIWPENKAPLVLVT 207
>gi|229069344|ref|ZP_04202634.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
gi|228713831|gb|EEL65716.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus F65185]
Length = 363
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G V+ + AS+ K++ A + E K
Sbjct: 57 NGEVLTSINENKKLPLASMAKIIIAVEFAKQVSEGKINRDE 97
>gi|146299863|ref|YP_001194454.1| beta-lactamase [Flavobacterium johnsoniae UW101]
gi|146154281|gb|ABQ05135.1| beta-lactamase [Flavobacterium johnsoniae UW101]
Length = 347
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ ++ AS+TK++TA +VF ++ K L T
Sbjct: 67 NKNTEYHIASVTKMVTAILVFKLIENDKLKLDTK 100
>gi|89890708|ref|ZP_01202217.1| glycoside hydrolase [Flavobacteria bacterium BBFL7]
gi|89516853|gb|EAS19511.1| glycoside hydrolase [Flavobacteria bacterium BBFL7]
Length = 983
Score = 36.1 bits (81), Expect = 7.9, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 15/61 (24%)
Query: 32 TLLDTNTGHVIAENY------------PDHPWN-PASLTKLM-TAYVVFSFLKEKKAMLT 77
L+ G V+ + D ASLTK+M T +V +E L
Sbjct: 619 ILI-ARKGKVVYQKNFGYHTYSKEKPVEDQDVYDIASLTKIMGTLPLVMELEEEGVISLE 677
Query: 78 T 78
Sbjct: 678 D 678
>gi|123441730|ref|YP_001005714.1| beta-lactam binding protein AmpH [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|332162340|ref|YP_004298917.1| beta-lactam binding protein AmpH [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|122088691|emb|CAL11494.1| putative penicillin-binding protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|325666570|gb|ADZ43214.1| beta-lactam binding protein AmpH [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
Length = 380
Score = 36.1 bits (81), Expect = 8.0, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD AS+TKLMT+ V+ ++ LT P
Sbjct: 81 PDSLIRIASITKLMTSEVMVKLAEDGTVKLTDP 113
>gi|119512333|ref|ZP_01631418.1| hypothetical protein N9414_13712 [Nodularia spumigena CCY9414]
gi|119462984|gb|EAW43936.1| hypothetical protein N9414_13712 [Nodularia spumigena CCY9414]
Length = 441
Score = 36.1 bits (81), Expect = 8.0, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 16 IFPFLSIAETNKLPYYTLLDTNTGHVIAE-NYPDHPWNPASLTKLMTAYVVFS 67
+ +AE + +G ++ + P ASLTK+ T+ V
Sbjct: 59 LISSKLVAENLAESQGIWM--QSGPMLMANHQGTTPLPAASLTKIATSLVALK 109
>gi|325688282|gb|EGD30301.1| peptidase family S11 [Streptococcus sanguinis SK72]
Length = 386
Score = 36.1 bits (81), Expect = 8.1, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 153 DLTTGKT-FAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 211
Query: 95 TF 96
+
Sbjct: 212 NY 213
>gi|311280737|ref|YP_003942968.1| beta-lactamase [Enterobacter cloacae SCF1]
gi|308749932|gb|ADO49684.1| beta-lactamase [Enterobacter cloacae SCF1]
Length = 385
Score = 36.1 bits (81), Expect = 8.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D ASLTKLMT+ ++ L + L P
Sbjct: 80 DSVIRIASLTKLMTSEMLVKLLDQGVVKLNDP 111
>gi|291191863|gb|ADD82978.1| class A extended-spectrum beta-lactamase CSP-1 [Capnocytophaga
sputigena]
Length = 305
Score = 36.1 bits (81), Expect = 8.1, Method: Composition-based stats.
Identities = 9/90 (10%), Positives = 24/90 (26%), Gaps = 9/90 (10%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNK----LPYYTL----LDTNTGHVIAENYPDHPWN 52
M+++ + + F ++ + +++ G +
Sbjct: 13 MKKYFSFCLLGIFIFCFSQQNLKRDITKIIQGKNALVAVSVMNSK-GKTEVNINGNKKVP 71
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITI 82
S+ K A V + L I +
Sbjct: 72 MLSVFKFHIALAVLDLVDRGILDLEQNIFV 101
>gi|163787063|ref|ZP_02181510.1| Beta-lactamase [Flavobacteriales bacterium ALC-1]
gi|159876951|gb|EDP71008.1| Beta-lactamase [Flavobacteriales bacterium ALC-1]
Length = 703
Score = 36.1 bits (81), Expect = 8.1, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 28/103 (27%)
Query: 1 MRQFLVIIAMAMLSNIFPF---LSIAETNKLPY---------YTLLDTNTGHVIAEN--- 45
M++ + ++ + + + F I + D G +I E
Sbjct: 1 MKKIITLLTLFISVSSFAQDKIQIIDSIVNSKIEGNDPGLMIGIVKD---GTIIYEKYRG 57
Query: 46 ----------YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
N AS+ K TA ++ + + L
Sbjct: 58 LAYLPYQIKMDEKTKSNIASVAKQYTALMILDLALKGQLSLED 100
>gi|229157120|ref|ZP_04285200.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
gi|228626184|gb|EEK82931.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 4342]
Length = 359
Score = 36.1 bits (81), Expect = 8.1, Method: Composition-based stats.
Identities = 25/214 (11%), Positives = 55/214 (25%), Gaps = 15/214 (7%)
Query: 1 MRQFLVIIAMAML-----------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M F+++I+ L + ++ L+ V+ P+
Sbjct: 1 MGIFVLLISGNFLVKKVWSSNNDDAQYIASFIEEHKDEKNSALLV-KRNDKVVYSVNPNV 59
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS KL+ A + E K + +S N +T K
Sbjct: 60 VLPVASTMKLIVALEFTKQVTEGKI--DSSSFVSINDVNRYYVPNTDGGAQDRWQRYLEK 117
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+ +A+ + K L + + + H
Sbjct: 118 TGKITEGAISLEEVAKGMVKFSSNANAEYLMEVLGLDNINRNL-QSLSLPAHQPLFPIVS 176
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ + + + + K E+ ++Y
Sbjct: 177 SLYIPGYLHKELHVPKYKIEKKLKEMSQEQYRQY 210
>gi|227540040|ref|ZP_03970089.1| beta-lactamase [Sphingobacterium spiritivorum ATCC 33300]
gi|227240115|gb|EEI90130.1| beta-lactamase [Sphingobacterium spiritivorum ATCC 33300]
Length = 300
Score = 36.1 bits (81), Expect = 8.2, Method: Composition-based stats.
Identities = 15/142 (10%), Positives = 37/142 (26%), Gaps = 16/142 (11%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLD 105
D + AS+ K+ VF+ + + + I + + Y S ++ D
Sbjct: 59 NADSIFPTASIIKVPILAGVFNKIGKGELKYNDK-FIYRQSRAYGGSGLMQFFKDSVETD 117
Query: 106 NALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYT 165
+ ++ +D +I K + M+ G+ +
Sbjct: 118 LSTMAALMIGYSDNVTSIWCQELAEGTKINELMDE---------------LGLPNTRVNS 162
Query: 166 TARDMAILSWRIKTDFPQYMHY 187
+ +
Sbjct: 163 RTAGREAIWKKYGWGHTTPREM 184
>gi|217960943|ref|YP_002339511.1| hypothetical protein BCAH187_A3568 [Bacillus cereus AH187]
gi|222097004|ref|YP_002531061.1| d-alanyl-d-alanine carboxypeptidase [Bacillus cereus Q1]
gi|229140154|ref|ZP_04268712.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
gi|217064601|gb|ACJ78851.1| hypothetical protein BCAH187_A3568 [Bacillus cereus AH187]
gi|221241062|gb|ACM13772.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Q1]
gi|228643240|gb|EEK99513.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST26]
Length = 359
Score = 36.1 bits (81), Expect = 8.2, Method: Composition-based stats.
Identities = 25/214 (11%), Positives = 55/214 (25%), Gaps = 15/214 (7%)
Query: 1 MRQFLVIIAMAML-----------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M F+++I+ L + ++ L+ V+ P+
Sbjct: 1 MGIFVLLISGNFLVKKVWSSNNDDAQYIASFIEEHKDEKNSALLV-KRNDKVVYSVNPNV 59
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS KL+ A + E K + +S N +T K
Sbjct: 60 VLPVASTMKLIVALEFTKQVTEGKI--DSSSFVSINDVNRYYVPNTDGGAQDRWQRYLEK 117
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+ +A+ + K L + + + H
Sbjct: 118 TGKITEGAISLEEVAKGMVKFSSNANAEYLMEVLGLDNINRNL-QSLSLPAHQPLFPIVS 176
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ + + + + K E+ ++Y
Sbjct: 177 SLYIPGYLHKELHVPKYKIEKKLKEMSQEQYRQY 210
>gi|306834612|ref|ZP_07467724.1| beta-lactamase [Streptococcus bovis ATCC 700338]
gi|304423248|gb|EFM26402.1| beta-lactamase [Streptococcus bovis ATCC 700338]
Length = 428
Score = 36.1 bits (81), Expect = 8.3, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
D AS+ KL T Y V L++
Sbjct: 222 NADTVMYSASIAKLATLYYVEGKLQDGTISANDT 255
>gi|74316119|ref|YP_313859.1| D-alanyl-D-alanine carboxypeptidase PBP3 [Thiobacillus
denitrificans ATCC 25259]
gi|74055614|gb|AAZ96054.1| peptidase S13, D-Ala-D-Ala carboxypeptidase C [Thiobacillus
denitrificans ATCC 25259]
Length = 488
Score = 36.1 bits (81), Expect = 8.3, Method: Composition-based stats.
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 31 YTLL---DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
++ D + + + NPAS+ KL+T++ L T
Sbjct: 56 AVVVQKLDAE--QPLLSHNAEAALNPASVMKLVTSFAALDQLGPGYRWTTELW 106
>gi|332362765|gb|EGJ40561.1| peptidase family S11 [Streptococcus sanguinis SK49]
Length = 359
Score = 36.1 bits (81), Expect = 8.3, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 35 DTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNS 94
D TG P S KL +V + K + I+ EY +
Sbjct: 126 DLTTGKT-FAMNDTQPMTAGSTYKLPLNMLVVDEVAAGKLSMDERFDITNTNYEYRGEHD 184
Query: 95 TF 96
+
Sbjct: 185 NY 186
>gi|261493509|ref|ZP_05990031.1| cell division protein FtsI [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261495862|ref|ZP_05992294.1| cell division protein FtsI [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261308489|gb|EEY09760.1| cell division protein FtsI [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310842|gb|EEY12023.1| cell division protein FtsI [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 686
Score = 36.1 bits (81), Expect = 8.3, Method: Composition-based stats.
Identities = 19/172 (11%), Positives = 40/172 (23%), Gaps = 25/172 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTK 58
+ L+D TG ++A P+ + P S K
Sbjct: 353 AVQENNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFKPELMRNRAITDTFEPGSTVK 412
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
T + ++ + ++TL L+ +
Sbjct: 413 PFTVLTALQNG----VTYRDEVIGTRPFVVNGHTIKDVAPRDSLTLTGILQKSSNIGVSK 468
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+ + + V +T LG + T +
Sbjct: 469 LALRMPANALVDTYTKVGFGKDTGLGLGEQRGTNGDRKRWADIERATLSYGY 520
>gi|295822213|gb|ADG36760.1| extended-spectrum class A beta-lactamase [Rahnella sp. 381-Salad]
Length = 218
Score = 36.1 bits (81), Expect = 8.4, Method: Composition-based stats.
Identities = 33/203 (16%), Positives = 55/203 (27%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + KK +LT + + K+ + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKESEVKKNLLTQHVGLKKSDLVNYNPITEKHLKEGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ + S N + E L K L T +
Sbjct: 65 IGELAAAALQYSDNTAMNKLIEHLGGPHKVTDYARTLGDNTFRLDRTEPTLNTAIPGDER 124
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGFT 221
TT+ LS + T + + +E G KTG
Sbjct: 125 DTTSPRAMALSLQHATLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWIVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ L+ V
Sbjct: 185 DYGTTNDIAVIWPENKAPLVLVT 207
>gi|295822173|gb|ADG36740.1| extended-spectrum class A beta-lactamase [Rahnella sp. 296-Salad]
gi|295822179|gb|ADG36743.1| extended-spectrum class A beta-lactamase [Rahnella sp. 311-Carrot]
gi|295822183|gb|ADG36745.1| extended-spectrum class A beta-lactamase [Rahnella sp. 326-Celery]
Length = 218
Score = 36.1 bits (81), Expect = 8.4, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + + +L +++ K+ + + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKHSETQTELLNRRVSLKKSDLVNYNPITEKHLDTGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + S N + E L +K ++ + + + + L + A
Sbjct: 65 VGELAAAALQYSDNTAMNKLIEQLGGPQKVTEYARTLGDKTFRLDRTEPTLNTAIPGDDR 124
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+ L Q+ + A G KTG
Sbjct: 125 DTTSPRAMALSLQHVTLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWVVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ LI +
Sbjct: 185 DYGTTNDIAVIWPDNKAPLILIT 207
>gi|238761961|ref|ZP_04622934.1| Penicillin-binding protein ampH [Yersinia kristensenii ATCC 33638]
gi|238699689|gb|EEP92433.1| Penicillin-binding protein ampH [Yersinia kristensenii ATCC 33638]
Length = 382
Score = 36.1 bits (81), Expect = 8.4, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD AS+TKLMT+ V+ ++ LT P
Sbjct: 83 PDSLIRIASITKLMTSEVMVKLAEDGTVKLTDP 115
>gi|254362467|ref|ZP_04978575.1| cell division protein FtsI [Mannheimia haemolytica PHL213]
gi|153094059|gb|EDN74971.1| cell division protein FtsI [Mannheimia haemolytica PHL213]
Length = 686
Score = 36.1 bits (81), Expect = 8.4, Method: Composition-based stats.
Identities = 19/172 (11%), Positives = 40/172 (23%), Gaps = 25/172 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTK 58
+ L+D TG ++A P+ + P S K
Sbjct: 353 AVQENNAESGTAVLVDVQTGEILAMANAPSFNPNKRDSFKPELMRNRAITDTFEPGSTVK 412
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
T + ++ + ++TL L+ +
Sbjct: 413 PFTVLTALQNG----VTYRDEVIGTRPFVVNGHTIKDVAPRDSLTLTGILQKSSNIGVSK 468
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+ + + V +T LG + T +
Sbjct: 469 LALRMPANALVDTYTKVGFGKDTGLGLGEQRGTNGDRKRWADIERATLSYGY 520
>gi|54297538|ref|YP_123907.1| hypothetical protein lpp1588 [Legionella pneumophila str. Paris]
gi|53751323|emb|CAH12739.1| hypothetical protein lpp1588 [Legionella pneumophila str. Paris]
Length = 266
Score = 36.1 bits (81), Expect = 8.4, Method: Composition-based stats.
Identities = 21/203 (10%), Positives = 49/203 (24%), Gaps = 11/203 (5%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVI--AENYPDHPWNPASLTK 58
M++ ++ + +L + + V+ N D ++PAS K
Sbjct: 1 MKKIIIFLYTGLLFCV-STWAQDTCFLAK-------ENQTVLKREGNDCDQRYSPASTFK 52
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ + + F K L K Y + T D+ + +
Sbjct: 53 IALSLMGFDSGILKD-ELHPEWPYKKEYELYLNVWKYPQNPHTWIRDSCVWYSQALTRQL 111
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIK 178
+ + +N GL+ ++ + + + +
Sbjct: 112 GMKRFKGYVDAFHYGNQDVSGDKGQNNGLTHAWLSSSLSISPTEQIQFLQKIIYKKLPVS 171
Query: 179 TDFPQYMHYFQIKGLEIKGKKYP 201
G K
Sbjct: 172 QKAYTMTKNIMYIQELPGGWKLY 194
>gi|311334636|dbj|BAJ24845.1| S12 family peptidase [Streptomyces sp. 82F2]
Length = 382
Score = 36.1 bits (81), Expect = 8.5, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
E D + S+TK TA V+ E + L P
Sbjct: 75 ERGGDDRYRVGSITKTFTATVLLQLQAEGRIDLDDP 110
>gi|146299215|ref|YP_001193806.1| peptidoglycan glycosyltransferase [Flavobacterium johnsoniae UW101]
gi|146153633|gb|ABQ04487.1| peptidoglycan glycosyltransferase [Flavobacterium johnsoniae UW101]
Length = 657
Score = 36.1 bits (81), Expect = 8.5, Method: Composition-based stats.
Identities = 17/145 (11%), Positives = 34/145 (23%), Gaps = 4/145 (2%)
Query: 7 IIAMAMLSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVF 66
I+A+ + P + + Y L + + + + P S K++T V
Sbjct: 260 ILALVTAPSYDPGILVGRQKSKNYTLLYHDSIAKPLYDRGLLAEYPPGSPFKILTGLVAL 319
Query: 67 SFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAES 126
T S L N + +
Sbjct: 320 QE---GVINEQTTFMCHHGFSYGGGRFMKCHGFGPHQLHNGIYNSCNTYFGQAYMLTINK 376
Query: 127 LCKTEKKFVQHMNNTSKNLGLSATH 151
+ ++ K+ GL
Sbjct: 377 YKDPGQAV-DVWSSHVKSFGLGQFM 400
>gi|327490348|gb|EGF22135.1| beta-lactamase [Streptococcus sanguinis SK1058]
Length = 427
Score = 36.1 bits (81), Expect = 8.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+TG A D AS+TKL Y V L +KK L
Sbjct: 212 LDTGKE-AGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKF 255
>gi|30263498|ref|NP_845875.1| hypothetical protein BA_3605 [Bacillus anthracis str. Ames]
gi|47778183|ref|YP_020240.2| hypothetical protein GBAA_3605 [Bacillus anthracis str. 'Ames
Ancestor']
gi|228916179|ref|ZP_04079749.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228934824|ref|ZP_04097655.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229092514|ref|ZP_04223670.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
gi|30258133|gb|AAP27361.1| hypothetical protein BA_3605 [Bacillus anthracis str. Ames]
gi|47551888|gb|AAT32715.2| hypothetical protein GBAA_3605 [Bacillus anthracis str. 'Ames
Ancestor']
gi|228690801|gb|EEL44576.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock3-42]
gi|228824724|gb|EEM70525.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228843377|gb|EEM88455.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 359
Score = 36.1 bits (81), Expect = 8.7, Method: Composition-based stats.
Identities = 22/213 (10%), Positives = 55/213 (25%), Gaps = 17/213 (7%)
Query: 1 MRQFLVIIAMAML-----------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M F+++I+ L + ++ L+ V+ P+
Sbjct: 1 MGIFVLLISGNFLVKKVWSSNNDDAQYIASFIEEHKDEKNSALLV-KRNDKVVYSVNPNV 59
Query: 50 PWNPASLTKLMTAYVVFSFLKE-KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS KL V + K+ + + + +S N +T
Sbjct: 60 VLPVASTMKL---IVALEYTKQVTEGKIDSSRFVSINDVNRYYVPNTDGGAQDRWQSYLE 116
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
K + +A + + L + + + H
Sbjct: 117 KKGKITEGAVSLEEVARGMVRFSSNANAEYLMEVLGLDNINRNL-QSLSLPAHQPIFPIV 175
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ + + + + + E+ ++Y
Sbjct: 176 SSLYIPGYLHKELHVPKYKIEKRLKEMSQEQYR 208
>gi|223041549|ref|ZP_03611750.1| peptidoglycan synthetase FtsI [Actinobacillus minor 202]
gi|223017644|gb|EEF16054.1| peptidoglycan synthetase FtsI [Actinobacillus minor 202]
Length = 681
Score = 36.1 bits (81), Expect = 8.8, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 42/172 (24%), Gaps = 25/172 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTK 58
+ L+D TG V+A P+ + P S K
Sbjct: 362 AVKENDAESGTAVLVDVTTGEVLAMANAPSFNPNKRDTFKPELMRNRAITDTFEPGSTVK 421
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ A I ++ + + +++L L+ +
Sbjct: 422 PLVVLTALQNG----ATYRDEIINTRPFTVNGHTIKDVSPRESLSLTGILQKSSNVGVSR 477
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+ + + V +T LG + T A
Sbjct: 478 LALRMPSTALVDTYSKVGFGKDTGLGLGEQRGTNGDRKRWADIERATMAYGY 529
>gi|67973196|gb|AAY84135.1| beta-lactamase [Staphylococcus aureus]
Length = 160
Score = 36.1 bits (81), Expect = 8.8, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 12/134 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET---------NKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ +++IA+A++ + S N LDT +G + D +
Sbjct: 1 MKKLILLIAIALVLSACNSTSSHAKELNNLEKKYNANIGVYALDTKSGKE-VKFNADKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L + I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKVHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAE 125
+ S N I
Sbjct: 118 MKYSDNTANNKIIN 131
>gi|332365104|gb|EGJ42869.1| beta-lactamase [Streptococcus sanguinis SK355]
Length = 427
Score = 35.7 bits (80), Expect = 8.8, Method: Composition-based stats.
Identities = 27/209 (12%), Positives = 56/209 (26%), Gaps = 4/209 (1%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+TG A D AS+TKL Y V L +KK L +++ +
Sbjct: 212 LDTGKE-AGINQDQEMYSASVTKLPYLYYVQEQLNQKKISLDQKFKYVGAVNDFAGAYEP 270
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT---HF 152
GS + + + N +A + + ++ + ++ +
Sbjct: 271 EGSGSIEKSADDKEYSVHDLINRVAKESDNVAHNILGYYATNQSDKNFQQTINKIAGKKW 330
Query: 153 MNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLG 212
+ + D +Y + + K + F
Sbjct: 331 DVEERQASSRMAGNVLEAIYEQNGMIIDALSQTNYDNQRISKNIDAKVAHKIGDAYDFKH 390
Query: 213 ADGMKTGFTCASGFNIVASAIQGDQSLIA 241
+ + +A + S IA
Sbjct: 391 DAAIVYADSPFIIVIFTNNANYDNISQIA 419
>gi|313889519|ref|ZP_07823165.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
20026]
gi|313122131|gb|EFR45224.1| conserved hypothetical protein [Streptococcus pseudoporcinus SPIN
20026]
Length = 428
Score = 35.7 bits (80), Expect = 8.8, Method: Composition-based stats.
Identities = 20/204 (9%), Positives = 48/204 (23%), Gaps = 13/204 (6%)
Query: 46 YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSN--------STFK 97
D AS+ KL T Y V + L + P+ + + +
Sbjct: 222 NADKMMYSASIAKLATLYYVQNQLNTGQIKPDKPLRYIDQVNHFDGAYGPSGSGHIDKEA 281
Query: 98 KGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHG 157
+D+ LK + S N + + + +S +
Sbjct: 282 DNKEYRVDSLLKAIAQHSDNVATNILGYYIANKYDH-----KFYLQVNAISGIDWNMESR 336
Query: 158 VVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMK 217
++ + + + + + + + +
Sbjct: 337 MISSHAAANIMESIYYQKGEIISYLSQTDFDDTRISKNIQVPVAHKIGDAYDYKHDVAIV 396
Query: 218 TGFTCASGFNIVASAIQGDQSLIA 241
G + + D + IA
Sbjct: 397 YGNSPFILSIFTDKSSYDDITNIA 420
>gi|238794256|ref|ZP_04637870.1| Penicillin-binding protein ampH [Yersinia intermedia ATCC 29909]
gi|238726438|gb|EEQ17978.1| Penicillin-binding protein ampH [Yersinia intermedia ATCC 29909]
Length = 380
Score = 35.7 bits (80), Expect = 8.8, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 47 PDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
PD AS+TKLMT+ V+ + LT P
Sbjct: 81 PDSLIRIASITKLMTSEVMVKLADDGTVKLTDP 113
>gi|206975500|ref|ZP_03236413.1| hypothetical protein BCH308197_3492 [Bacillus cereus H3081.97]
gi|206746402|gb|EDZ57796.1| hypothetical protein BCH308197_3492 [Bacillus cereus H3081.97]
gi|324327447|gb|ADY22707.1| hypothetical protein YBT020_17385 [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 369
Score = 35.7 bits (80), Expect = 8.9, Method: Composition-based stats.
Identities = 21/174 (12%), Positives = 44/174 (25%), Gaps = 4/174 (2%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
L+ V+ P+ AS KL+ A + E K + +S N
Sbjct: 51 SALLV-KRNDKVVYSVNPNVVLPVASTMKLIVALEFTKQVTEGKI--DSSSFVSINDVNR 107
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSA 149
+T K + +A+ + K L
Sbjct: 108 YYVPNTDGGAQDRWQRYLEKTGKITEGAISLEEVAKGMVKFSSNANAEYLMEVLGLDNIN 167
Query: 150 THFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ + + H + + + + + K E+ ++Y
Sbjct: 168 RNL-QSLSLPAHQPLFPIVSSLYIPGYLHKELHVPKYKIEKKLKEMSQEQYRQY 220
>gi|77411316|ref|ZP_00787665.1| protein of unknown function [Streptococcus agalactiae CJB111]
gi|77162652|gb|EAO73614.1| protein of unknown function [Streptococcus agalactiae CJB111]
Length = 428
Score = 35.7 bits (80), Expect = 8.9, Method: Composition-based stats.
Identities = 26/222 (11%), Positives = 54/222 (24%), Gaps = 16/222 (7%)
Query: 40 HVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKG 99
+A D AS+ KL T Y +K K L + N +++P S + G
Sbjct: 216 QTVAGINIDRSMYSASIAKLATLYASQEQVKLGKLSLDSKFEYKDNVNQFPNSYAPSGSG 275
Query: 100 STMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVV 159
+ + + A +V N H +
Sbjct: 276 KLEKKADHKLYTVKELLEATAKESDNVATNMLGYYVN--NQYDSMFQTQVDTISGMHWDM 333
Query: 160 QHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTG 219
+ + ++ + + + + K A
Sbjct: 334 KKRQISPQAAGKMMEAIYYQNGDIVNYLSKTDFDNTRIPKNIPVKVAHKIGD-------- 385
Query: 220 FTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLS 261
A + A+ + +Q I +I + +
Sbjct: 386 ---AYDYKHDAAIVYAEQPFIMIIF---TDKSSYDDITKIAD 421
>gi|297580758|ref|ZP_06942684.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio cholerae RC385]
gi|297535174|gb|EFH74009.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio cholerae RC385]
Length = 487
Score = 35.7 bits (80), Expect = 9.0, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+I + + Y L+ D E + PAS K++TA
Sbjct: 22 FLIASPIYAQTPLTAATTKLPQGARYSLLIEDAALQQNTLELNTHLYYPPASTQKILTAL 81
Query: 64 VV 65
Sbjct: 82 AA 83
>gi|228986635|ref|ZP_04146766.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773120|gb|EEM21555.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 359
Score = 35.7 bits (80), Expect = 9.0, Method: Composition-based stats.
Identities = 25/214 (11%), Positives = 55/214 (25%), Gaps = 15/214 (7%)
Query: 1 MRQFLVIIAMAML-----------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M F+++I+ L + ++ L+ V+ P+
Sbjct: 1 MGIFVLLISGNFLVKKVWSSNNDDAQYIASFIEEHKDEKNSALLV-KRNDKVVYSVNPNV 59
Query: 50 PWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALK 109
AS KL+ A + E K + +S N +T K
Sbjct: 60 VLPVASTMKLIVALEFTKQVTEGKI--DSSSFVSINDVNRYYVPNTDGGAQDRWQRYLEK 117
Query: 110 LLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARD 169
+ +A+ + K L + + + H
Sbjct: 118 AGKITEGAISLEEVAKGMVKFSSNANAEYLMEVLGLDNINRNL-QSLSLPAHQPLFPIVS 176
Query: 170 MAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ + + + + K E+ ++Y
Sbjct: 177 SLYIPGYLHKELHVPKYKIEKKLKEMSQEQYRQY 210
>gi|153830954|ref|ZP_01983621.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio cholerae 623-39]
gi|148873567|gb|EDL71702.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio cholerae 623-39]
Length = 487
Score = 35.7 bits (80), Expect = 9.0, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+I + + Y L+ D E + PAS K++TA
Sbjct: 22 FLIASPIYAQTPLTAATTKLPQGARYSLLIEDAALQQNTLELNTHLYYPPASTQKILTAL 81
Query: 64 VV 65
Sbjct: 82 AA 83
>gi|153217143|ref|ZP_01950907.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio cholerae 1587]
gi|124113836|gb|EAY32656.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Vibrio cholerae 1587]
Length = 487
Score = 35.7 bits (80), Expect = 9.0, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 5 LVIIAMAMLSNIFPFLSIAETNKLPYYTLL-DTNTGHVIAENYPDHPWNPASLTKLMTAY 63
+I + + Y L+ D E + PAS K++TA
Sbjct: 22 FLIASPIYAQTPLTAATTKLPQGARYSLLIEDAALQQNTLELNTHLYYPPASTQKILTAL 81
Query: 64 VV 65
Sbjct: 82 AA 83
>gi|92115047|ref|YP_574975.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Chromohalobacter salexigens DSM 3043]
gi|91798137|gb|ABE60276.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Chromohalobacter salexigens DSM 3043]
Length = 492
Score = 35.7 bits (80), Expect = 9.0, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFS 67
SN+ L +G + P +PAS+TKL TA
Sbjct: 39 FSNLATLADKGFVIGAQAQLL---GSGENLGSIQPTRRLSPASVTKLYTAAASLD 90
>gi|67973132|gb|AAY84093.1| beta-lactamase [Staphylococcus epidermidis]
Length = 178
Score = 35.7 bits (80), Expect = 9.0, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 12/134 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET---------NKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ +++IA+A++ + S N LDT +G + D +
Sbjct: 1 MKKLILLIAIALVLSACNSTSSHAKELNNLEKKYNANIGVYALDTKSGKE-VKFNADKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L + I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKVHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAE 125
+ S N I
Sbjct: 118 MKYSDNTANNKIIN 131
>gi|297568514|ref|YP_003689858.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Desulfurivibrio alkaliphilus AHT2]
gi|296924429|gb|ADH85239.1| D-alanyl-D-alanine
carboxypeptidase/D-alanyl-D-alanine-endopeptidase
[Desulfurivibrio alkaliphilus AHT2]
Length = 405
Score = 35.7 bits (80), Expect = 9.0, Method: Composition-based stats.
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 18 PFLSIAETNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSF 68
+ + LL + G ++ + + PAS K+ T +
Sbjct: 20 AAAGLPPSVFSDGGYLL-SKDGRLLLAHNHEQALVPASTWKIATGLMALEQ 69
>gi|167589614|ref|ZP_02382002.1| Beta-lactamase [Burkholderia ubonensis Bu]
Length = 270
Score = 35.7 bits (80), Expect = 9.0, Method: Composition-based stats.
Identities = 28/231 (12%), Positives = 52/231 (22%), Gaps = 25/231 (10%)
Query: 32 TLLDTNTGHVIAENYP-DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ D TGHV+ AS K+ + + + K TP ++
Sbjct: 30 IVADAATGHVLVRQGECATRVTSASTFKVAISLMGYDAGFLK--DEHTPTLPYRDGYPDW 87
Query: 91 PSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSAT 150
+ + + + G
Sbjct: 88 GGAAWREPTDPARWMRISIFWYSQQVAQAI-------------GQTRFQQYTTAFGYGNA 134
Query: 151 HFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTF 210
+ G + A +S + DF + + +
Sbjct: 135 DVTSNEGELNGVMGAWANGSLQISPLEQIDFMRKIVNRTLPVSAHAYDMTARLMRLDAQP 194
Query: 211 LGAD-GMKTGFTCASGFN--------IVASAIQGDQSLIAVILGALDRNTR 252
G KTG V A +G ++L+ L D+ R
Sbjct: 195 DGWTVHGKTGTGSPGAQYDAAHAYGWFVGWATKGPRTLVFANLIQDDKPQR 245
>gi|328945184|gb|EGG39339.1| beta-lactamase [Streptococcus sanguinis SK1087]
Length = 427
Score = 35.7 bits (80), Expect = 9.1, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+TG A D AS+TKL Y V L +KK L
Sbjct: 212 LDTGKE-AGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKF 255
>gi|322513877|ref|ZP_08066956.1| cell division protein FtsI/penicillin-binding protein
[Actinobacillus ureae ATCC 25976]
gi|322120276|gb|EFX92223.1| cell division protein FtsI/penicillin-binding protein
[Actinobacillus ureae ATCC 25976]
Length = 686
Score = 35.7 bits (80), Expect = 9.3, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 43/172 (25%), Gaps = 25/172 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTK 58
IA + L+D TG ++A P+ + P S K
Sbjct: 354 AVIANNAESGTAVLVDVQTGEILAMANAPSFNPNKRNSFKPELMRNRAITDTFEPGSTVK 413
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ A + ++ + +++L L+ +
Sbjct: 414 PLVVLTALQNG----ATYRDEVISTRPFVVNGHTIKDVAPRESLSLTGILQKSSNIGVSR 469
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+ + + V +T LG + T A
Sbjct: 470 LALRMPSTALVDTYSKVGFGKDTGLGLGEQRGTNGDRKRWSDIERATMAYGY 521
>gi|302525844|ref|ZP_07278186.1| beta-lactamase [Streptomyces sp. AA4]
gi|302434739|gb|EFL06555.1| beta-lactamase [Streptomyces sp. AA4]
Length = 271
Score = 35.7 bits (80), Expect = 9.3, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 24 ETNKLPYYTLLDTNTGHVIAEN-YPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ + + +G V + P P+ AS+TKL+TAY ++E L TP
Sbjct: 11 PVDNAAAGVV--SASGEVRGRHGDPARPFRLASVTKLLTAYAAHIAIEEGVVELDTP 65
>gi|240948413|ref|ZP_04752791.1| penicillin-binding protein 3 [Actinobacillus minor NM305]
gi|240297239|gb|EER47797.1| penicillin-binding protein 3 [Actinobacillus minor NM305]
Length = 681
Score = 35.7 bits (80), Expect = 9.3, Method: Composition-based stats.
Identities = 21/172 (12%), Positives = 42/172 (24%), Gaps = 25/172 (14%)
Query: 20 LSIAETNKLPYYTLLDTNTGHVIA-----ENYPDHP----------------WNPASLTK 58
+ L+D TG V+A P+ + P S K
Sbjct: 362 AVKENDAESGTAVLVDVTTGEVLAMANAPSFNPNKRDTFKPELMRNRAITDTFEPGSTVK 421
Query: 59 LMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSAND 118
+ A I ++ + + +++L L+ +
Sbjct: 422 PLVVLTALQNG----ATYRDEIINTRPFTVNGHTIKDVSPRESLSLTGILQKSSNVGVSR 477
Query: 119 IAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTARDM 170
+A+ + + V +T LG + T A
Sbjct: 478 LALRMPSTALVDTYSKVGFGKDTGLGLGEQRGTNGDRKRWADIERATMAYGY 529
>gi|332363616|gb|EGJ41397.1| beta-lactamase [Streptococcus sanguinis SK1059]
Length = 427
Score = 35.7 bits (80), Expect = 9.4, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+TG A D AS+TKL Y V L +KK L
Sbjct: 212 LDTGKE-AGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKF 255
>gi|327463844|gb|EGF10160.1| beta-lactamase [Streptococcus sanguinis SK1057]
gi|327471618|gb|EGF17061.1| beta-lactamase [Streptococcus sanguinis SK408]
Length = 427
Score = 35.7 bits (80), Expect = 9.4, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+TG A D AS+TKL Y V L +KK L
Sbjct: 212 LDTGKE-AGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKF 255
>gi|261278042|dbj|BAI44618.1| penicillin-binding protein 2X [Streptococcus agalactiae]
Length = 752
Score = 35.7 bits (80), Expect = 9.4, Method: Composition-based stats.
Identities = 16/162 (9%), Positives = 44/162 (27%), Gaps = 28/162 (17%)
Query: 30 YYTLLDTNTGHVIA----------------ENYP--------DHPWNPASLTKLMTAYVV 65
T+++ TG ++A + D+ + P S K+MT
Sbjct: 295 SATVVNAKTGEILATSQRPTYNPSTLKGYDKKNLVTYNTLLYDNFFEPGSTMKVMTLASA 354
Query: 66 FSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAE 125
+T + S + ++ + + + + A +
Sbjct: 355 IDSKHFN----STEVYNSAQYKIADAIIRDWDVNEGLSSGSYMTFPQAFAHSSNAGMVTL 410
Query: 126 SLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
K++ +++ + + G+ + T
Sbjct: 411 EQKMGRDKWLNYLSKFKFDYPTRFGMLHESGGLFPSDNEVTI 452
>gi|25028009|ref|NP_738063.1| hypothetical protein CE1453 [Corynebacterium efficiens YS-314]
gi|259506400|ref|ZP_05749302.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|23493292|dbj|BAC18263.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166007|gb|EEW50561.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 342
Score = 35.7 bits (80), Expect = 9.4, Method: Composition-based stats.
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 13 LSNIFPFLSIAETNKLPYYTLLDTNTGHVIAE---NYPDHPWNPASLTKLMTAYVVFSFL 69
L+ I + + + + L D G + + S+TK TA ++ +
Sbjct: 47 LATILAEHAPPGSRNISAFILRD---GQATFAGLGSDEHTEFEIGSITKTFTADLLTRAV 103
Query: 70 KEKKAMLTTP 79
+ L T
Sbjct: 104 DRGELTLDTT 113
>gi|328869084|gb|EGG17462.1| beta-lactamase-type transpeptidase fold containing protein
[Dictyostelium fasciculatum]
Length = 342
Score = 35.7 bits (80), Expect = 9.4, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 17/62 (27%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ D T I ++ AS KL V ++ L T I S
Sbjct: 76 WAFSDFITEPFIESYNANNSQQTASTIKLWVLIAVLQDVQNGLYSLDTVIECSGQNLTIN 135
Query: 91 PS 92
Sbjct: 136 GC 137
>gi|332364174|gb|EGJ41951.1| beta-lactamase [Streptococcus sanguinis SK49]
Length = 427
Score = 35.7 bits (80), Expect = 9.5, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+TG A D AS+TKL Y V L +KK L
Sbjct: 212 LDTGKE-AGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKF 255
>gi|328870172|gb|EGG18547.1| beta-lactamase family protein [Dictyostelium fasciculatum]
Length = 547
Score = 35.7 bits (80), Expect = 9.5, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 2/111 (1%)
Query: 48 DHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNA 107
D+ AS+TK T ++F + L P ISK + +S K + A
Sbjct: 108 DNTVRIASITKTFTDLMMFQLRDKGVIALDDP--ISKYYPNFSIRDSYHTKRDITFRELA 165
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGV 158
+ + + TE ++ + L T + G+
Sbjct: 166 SHQSGLPREVPCNFDLLPTDNCTESIILERLQEHFLILPQYTTTHYSNLGM 216
>gi|148666676|gb|EDK99092.1| C-type lectin domain family 4, member f, isoform CRA_a [Mus
musculus]
Length = 203
Score = 35.7 bits (80), Expect = 9.5, Method: Composition-based stats.
Identities = 13/116 (11%), Positives = 34/116 (29%), Gaps = 3/116 (2%)
Query: 108 LKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTA 167
+ + A + + + + VQ ++ +GL+ V + A
Sbjct: 89 WREAEKFCTSQGAHLASVTSQEEQAFLVQTTSSGDHWIGLTDQGTEGIWRWVDGTPFNNA 148
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFTCA 223
+ K + H + + ++ N ++ TG++ A
Sbjct: 149 QSKGF---WGKNQPDNWRHRNGEREDCVHVRQQWNDMACGSSYPWVCKKSTGWSAA 201
>gi|308069170|ref|YP_003870775.1| beta-lactamase precursor (Penicillinase) [Paenibacillus polymyxa
E681]
gi|305858449|gb|ADM70237.1| Beta-lactamase precursor (Penicillinase) [Paenibacillus polymyxa
E681]
Length = 303
Score = 35.7 bits (80), Expect = 9.6, Method: Composition-based stats.
Identities = 41/270 (15%), Positives = 73/270 (27%), Gaps = 25/270 (9%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPYY-----------------TLLDTNTGH-VI 42
M FLV++ + E ++DT TG V
Sbjct: 16 MTLFLVLLVGCTKQGASTPSTEKEPPNSNAANVVFKQLETKFDARLGVYVIDTGTGKEVT 75
Query: 43 AENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTM 102
D + AS K + A V + L I +K+ + + M
Sbjct: 76 Y--RADERFAYASTYKALAAGAVLQQKSNDE--LGKVIKFAKDDLVTYSPITEQHVDTGM 131
Query: 103 TLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHG 162
L I S N + ++L E +N + + +
Sbjct: 132 NLKEISDAAIRYSDNTAGNLLLKALGGPEGFEKAMRDNGDTVVMANRYETELNEAIPGDH 191
Query: 163 HYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGF 220
T+ + S+++ T + Q + + G KTG
Sbjct: 192 RDTSTPNALANSFKVLTIDDSMPNDKQELLIGWLKENTTGDELIRAAVPEGWVVGDKTGA 251
Query: 221 TCASGFNIVASAIQGDQ-SLIAVILGALDR 249
N VA D+ +I ++ + D
Sbjct: 252 GSYGTRNDVAIVWPPDRKPIIIAVMSSRDT 281
>gi|306823938|ref|ZP_07457312.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
gi|309802389|ref|ZP_07696496.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
gi|304552936|gb|EFM40849.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679]
gi|308220989|gb|EFO77294.1| conserved hypothetical protein [Bifidobacterium dentium JCVIHMP022]
Length = 334
Score = 35.7 bits (80), Expect = 9.6, Method: Composition-based stats.
Identities = 17/137 (12%), Positives = 29/137 (21%), Gaps = 11/137 (8%)
Query: 30 YYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEY 89
+ L+D NTG I D AS K A + + L +
Sbjct: 111 SFVLVDINTGRAI-SYNADAQVYSASAIK---APFIMALASTGTIDLNAVYQAGDTQNAT 166
Query: 90 PPSNSTFKKGSTMTLDNALKLLIVKSA------NDIAVAIAESLCKTEKKFVQHMNNTSK 143
N + + + + A+ + + M
Sbjct: 167 TKQNIDQVLTVSDNTAYSWLVDTYGTDAFDSWAAQAGTAVQMAGYGYVTTCARDM-AKLW 225
Query: 144 NLGLSATHFMNAHGVVQ 160
G G
Sbjct: 226 TQGYGFLFAQQTSGAAD 242
>gi|228945397|ref|ZP_04107752.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228814369|gb|EEM60635.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 202
Score = 35.7 bits (80), Expect = 9.6, Method: Composition-based stats.
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 38 TGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTT 78
G VI + AS+ K++ A + E K
Sbjct: 57 NGEVITSINENKKLPLASMAKIVIAVEFAKQVSEGKISRDE 97
>gi|327467728|gb|EGF13222.1| beta-lactamase [Streptococcus sanguinis SK330]
Length = 427
Score = 35.7 bits (80), Expect = 9.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+TG A D AS+TKL Y V L +KK L
Sbjct: 212 LDTGKE-AGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKF 255
>gi|325695770|gb|EGD37669.1| beta-lactamase [Streptococcus sanguinis SK150]
Length = 427
Score = 35.7 bits (80), Expect = 9.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+TG A D AS+TKL Y V L +KK L
Sbjct: 212 LDTGKE-AGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKF 255
>gi|324991856|gb|EGC23779.1| beta-lactamase [Streptococcus sanguinis SK405]
gi|324996254|gb|EGC28164.1| beta-lactamase [Streptococcus sanguinis SK678]
gi|325698022|gb|EGD39903.1| beta-lactamase [Streptococcus sanguinis SK160]
gi|327458480|gb|EGF04830.1| beta-lactamase [Streptococcus sanguinis SK1]
Length = 427
Score = 35.7 bits (80), Expect = 9.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+TG A D AS+TKL Y V L +KK L
Sbjct: 212 LDTGKE-AGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKF 255
>gi|324989588|gb|EGC21534.1| beta-lactamase [Streptococcus sanguinis SK353]
gi|325686487|gb|EGD28516.1| beta-lactamase [Streptococcus sanguinis SK72]
Length = 427
Score = 35.7 bits (80), Expect = 9.7, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPI 80
+TG A D AS+TKL Y V L +KK L
Sbjct: 212 LDTGKE-AGINQDQEMYSASVTKLPYLYYVQEQLDQKKLSLDQKF 255
>gi|295822151|gb|ADG36729.1| extended-spectrum class A beta-lactamase [Rahnella sp. 142-Salad]
Length = 218
Score = 35.7 bits (80), Expect = 9.7, Method: Composition-based stats.
Identities = 33/203 (16%), Positives = 55/203 (27%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + KK +LT + + K+ + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKESEVKKNLLTQHVGLKKSDLVNYNPITEKHLNEGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGH 163
+ + S N + E L K L T +
Sbjct: 65 IGELAAAALQYSDNTAMNKLIEHLGGPNKVTDYARTLGDNTFRLDRTEPTLNTAIPGDER 124
Query: 164 YTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFL--GADGMKTGFT 221
TT+ LS + T + + +E G KTG
Sbjct: 125 DTTSPRAMALSLQHATLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWIVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ L+ V
Sbjct: 185 DYGTTNDIAVIWPENKAPLVLVT 207
>gi|229018329|ref|ZP_04175199.1| D-stereospecific peptide hydrolase [Bacillus cereus AH1273]
gi|229024557|ref|ZP_04181002.1| D-stereospecific peptide hydrolase [Bacillus cereus AH1272]
gi|228736622|gb|EEL87172.1| D-stereospecific peptide hydrolase [Bacillus cereus AH1272]
gi|228742918|gb|EEL93048.1| D-stereospecific peptide hydrolase [Bacillus cereus AH1273]
Length = 388
Score = 35.7 bits (80), Expect = 9.7, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 25 TNKLPYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTP 79
+ D +T D+ + AS+TK TA V + E + L P
Sbjct: 75 KISSYNAGVADLSTKK---SMKSDYRFRIASVTKTFTATTVLQLVGENRVQLDDP 126
>gi|42782615|ref|NP_979862.1| hypothetical protein BCE_3565 [Bacillus cereus ATCC 10987]
gi|42738541|gb|AAS42470.1| hypothetical protein BCE_3565 [Bacillus cereus ATCC 10987]
Length = 359
Score = 35.7 bits (80), Expect = 9.7, Method: Composition-based stats.
Identities = 24/213 (11%), Positives = 56/213 (26%), Gaps = 17/213 (7%)
Query: 1 MRQFLVIIAMAML-----------SNIFPFLSIAETNKLPYYTLLDTNTGHVIAENYPDH 49
M F+++I+ L + ++ L+ V+ P+
Sbjct: 1 MGIFVLLISGNFLVKKVWSSNNDDAQYIASFIEEHKDEKNSALLV-KRNDKVVYSVNPNV 59
Query: 50 PWNPASLTKLMTAYVVFSFLKE-KKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNAL 108
AS KL V + K+ + + + +S N +T
Sbjct: 60 VLPVASTMKL---IVALEYTKQVTEGKIDSSSFVSINDVNRYYVPNTDGGAQDRWQRYLE 116
Query: 109 KLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHYTTAR 168
K + +A+ + K L + + + H
Sbjct: 117 KTGKITEGAVSLEEVAKGMVKFSSNANAEYLMEVLGLDNINRNL-QSLSLPAHQPLFPIV 175
Query: 169 DMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYP 201
+ + + + + K E+ ++Y
Sbjct: 176 SSLYIPGYLHKELHVPKYKIEKKLKEMSQEQYR 208
>gi|47568908|ref|ZP_00239600.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
gi|47554392|gb|EAL12751.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus G9241]
Length = 369
Score = 35.7 bits (80), Expect = 9.7, Method: Composition-based stats.
Identities = 20/176 (11%), Positives = 45/176 (25%), Gaps = 6/176 (3%)
Query: 29 PYYTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKE-KKAMLTTPITISKNAS 87
L+ ++ P+ AS KL V + K+ + + + +S N
Sbjct: 50 SSALLV-KRNDKIVYSVNPNVVLPVASTMKL---IVALEYTKQVTEGKIDSSSFVSINDV 105
Query: 88 EYPPSNSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGL 147
+T K V +A+ + K L
Sbjct: 106 NRYYVPNTDGGAQDRWQRYLEKTGKVTEGAVSLEEVAKGMVKFSSNANAEYLMELLGLDN 165
Query: 148 SATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNT 203
+ + + H + + + + + K E+ ++Y
Sbjct: 166 INRNL-QSLSLPAHQPLFPIVSSLYIPGYLHKELHVPKYKIEKKLKEMSQEQYRQY 220
>gi|303239872|ref|ZP_07326395.1| ErfK/YbiS/YcfS/YnhG family protein [Acetivibrio cellulolyticus CD2]
gi|302592582|gb|EFL62307.1| ErfK/YbiS/YcfS/YnhG family protein [Acetivibrio cellulolyticus CD2]
Length = 611
Score = 35.7 bits (80), Expect = 9.8, Method: Composition-based stats.
Identities = 7/68 (10%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETN--------KLPYYTLLDTNTGHVIAENYPDHPWN 52
M++ + + ++ I P + + ++++++G + +
Sbjct: 102 MKKIVTLASLIFCLLISPLNIVYASVDNLEDALNSADSSVVIESSSGEIPLGKDENQKNA 161
Query: 53 PASLTKLM 60
P K+M
Sbjct: 162 P---YKVM 166
>gi|3603441|gb|AAC35853.1| type b beta-lactamase [Staphylococcus aureus]
Length = 244
Score = 35.7 bits (80), Expect = 9.8, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 48/134 (35%), Gaps = 12/134 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAET---------NKLPYYTLLDTNTGHVIAENYPDHPW 51
M++ +++IA+A++ + S N LDT +G + D +
Sbjct: 1 MKKLILLIAIALVLSACNSTSSHAKELNNLEKKYNANIGVYALDTKSGKE-VKFNADKRF 59
Query: 52 NPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLL 111
AS +K + + ++ + L + I+K+ G +TL ++
Sbjct: 60 AYASTSKAINSAILLEQVPYN--KLNKKVHINKDDIVAYSPILEKYVGKDITLKELIEAS 117
Query: 112 IVKSANDIAVAIAE 125
+ S N I
Sbjct: 118 MKYSDNTANNKIIN 131
>gi|295822147|gb|ADG36727.1| extended-spectrum class A beta-lactamase [Rahnella sp. 121-Celery]
gi|295822149|gb|ADG36728.1| extended-spectrum class A beta-lactamase [Rahnella sp. 136-Carrot]
gi|295822181|gb|ADG36744.1| extended-spectrum class A beta-lactamase [Rahnella sp. 320-Radish]
gi|295822195|gb|ADG36751.1| extended-spectrum class A beta-lactamase [Rahnella sp. 346-Carrot]
gi|295822199|gb|ADG36753.1| extended-spectrum class A beta-lactamase [Rahnella sp. 36-Radish]
gi|295822205|gb|ADG36756.1| extended-spectrum class A beta-lactamase [Rahnella sp. 370-Salad]
gi|295822209|gb|ADG36758.1| extended-spectrum class A beta-lactamase [Rahnella sp. 376-Carrot]
gi|295822221|gb|ADG36764.1| extended-spectrum class A beta-lactamase [Rahnella sp. 401-Salad]
gi|295822223|gb|ADG36765.1| extended-spectrum class A beta-lactamase [Rahnella sp. 51-Carrot]
gi|295822233|gb|ADG36770.1| extended-spectrum class A beta-lactamase [Rahnella sp. 71-Salad]
gi|295822235|gb|ADG36771.1| extended-spectrum class A beta-lactamase [Rahnella sp. 73-Celery]
gi|295822237|gb|ADG36772.1| extended-spectrum class A beta-lactamase [Rahnella sp. 75-Radish]
gi|295822245|gb|ADG36776.1| extended-spectrum class A beta-lactamase [Rahnella genomosp. 1]
Length = 218
Score = 35.7 bits (80), Expect = 9.8, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + + +L +++ K+ + + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKQSETQTELLNRRVSLKKSDLVNYNPITEKHLDTGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + S N + E L +K ++ + + + + L + A
Sbjct: 65 VGELAAAALQYSDNTAMNKLIEQLGGPQKVTEYARTLGDKTFRLDRTEPTLNTAIPGDDR 124
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+ L Q+ + A G KTG
Sbjct: 125 DTTSPRAMALSLQHVTLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWVVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ LI +
Sbjct: 185 DYGTTNDIAVIWPDNKAPLILIT 207
>gi|295822161|gb|ADG36734.1| extended-spectrum class A beta-lactamase [Rahnella sp. 171-Carrot]
gi|295822169|gb|ADG36738.1| extended-spectrum class A beta-lactamase [Rahnella sp. 214-Radish]
gi|295822189|gb|ADG36748.1| extended-spectrum class A beta-lactamase [Rahnella sp. 339-Carrot]
gi|295822229|gb|ADG36768.1| extended-spectrum class A beta-lactamase [Rahnella sp. 57-Carrot]
Length = 218
Score = 35.7 bits (80), Expect = 9.9, Method: Composition-based stats.
Identities = 27/203 (13%), Positives = 57/203 (28%), Gaps = 3/203 (1%)
Query: 44 ENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMT 103
D + S +K M A + + + +L +++ K+ + + MT
Sbjct: 5 AYRADERFAMCSTSKFMAASAILKQSETQTELLNRRVSLKKSDLVNYNPITEKHLDTGMT 64
Query: 104 LDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFMNAHGVVQH 161
+ + S N + E L +K ++ + + + + L + A
Sbjct: 65 VGELAAAALQYSDNTAMNKLIEQLGGPQKVTEYARTLGDKTFRLDRTEPTLNTAIPGDDR 124
Query: 162 GHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGFT 221
+ L Q+ + A G KTG
Sbjct: 125 DTTSPRAMALSLQHVTLGSALAEPQRAQLVEWMKGNTTGAMSIRAGLPATWVVGDKTGSG 184
Query: 222 CASGFNIVASAIQGDQ-SLIAVI 243
N +A ++ LI +
Sbjct: 185 DYGTTNDIAVIWPDNKAPLILIT 207
>gi|219920941|emb|CAQ76648.1| beta-lactamase [Klebsiella oxytoca]
Length = 256
Score = 35.7 bits (80), Expect = 9.9, Method: Composition-based stats.
Identities = 32/203 (15%), Positives = 55/203 (27%), Gaps = 4/203 (1%)
Query: 36 TNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNST 95
+ + D + S K+M A V + ++ + I K+ +
Sbjct: 56 ADDSQTLY--RGDERFAMCSTGKVMAAAAVLKQSESNPEVVNKRLEIKKSDLVVWSPITE 113
Query: 96 FKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEK--KFVQHMNNTSKNLGLSATHFM 153
S MTL + S N + L EK F Q + + + L +
Sbjct: 114 KHLQSGMTLAELSAAALQYSDNTAMNKMISYLGGPEKVTAFAQSIGDVTFRLDRTEPALN 173
Query: 154 NAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGA 213
+A + T L + Q+ + A A
Sbjct: 174 SAIPGDKRDTTTPLAMAESLRKLTLGNALGEQQRAQLVTWLKGNTTGGQSIRAGLPASWA 233
Query: 214 DGMKTGFTCASGFNIVASAIQGD 236
G KTG N +A +
Sbjct: 234 VGDKTGGGDYGTTNDIAVIWPEN 256
>gi|14029259|gb|AAK52604.1|AF294653_2 OXA-31 [Pseudomonas aeruginosa]
gi|118132663|gb|ABK60184.1| oxacillinase [Serratia marcescens]
Length = 276
Score = 35.7 bits (80), Expect = 9.9, Method: Composition-based stats.
Identities = 24/233 (10%), Positives = 60/233 (25%), Gaps = 16/233 (6%)
Query: 4 FLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENY---PDHPWN 52
F + + +A + S + + L D +T IA+
Sbjct: 9 FAIFLIIANIIYSSASASTDISTVASPLFEGTEGCFLLYDVSTNAEIAQFNKAKCATQMP 68
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKLLI 112
P S K+ + + F + + K + +++ + + ++
Sbjct: 69 PDSTFKIALSLMAFDAEIIDQKTIFKWDKTPKGMEIWNSNHTPKTWMQFSVVWVSQEITQ 128
Query: 113 VKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFM-----NAHGVVQHGHYTTA 167
N I + + + N + + + ++
Sbjct: 129 KIGLNKIKNYLKDFDYGNQDFSGDKERNNGLTEAWLESSLKISPEEQIQFLRKIINHNLP 188
Query: 168 RDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTNWAVGTFLGADGMKTGF 220
+ + I+ + Q + + N G F G K+G
Sbjct: 189 VKNSAIENTIENMYLQDLENSTKLYGKTGAGFTANRTLQNGWFEGFIISKSGH 241
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.312 0.109 0.266
Lambda K H
0.267 0.0333 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,561,293,382
Number of Sequences: 14124377
Number of extensions: 55917196
Number of successful extensions: 253312
Number of sequences better than 10.0: 7746
Number of HSP's better than 10.0 without gapping: 6045
Number of HSP's successfully gapped in prelim test: 1701
Number of HSP's that attempted gapping in prelim test: 240832
Number of HSP's gapped (non-prelim): 8106
length of query: 336
length of database: 4,842,793,630
effective HSP length: 139
effective length of query: 197
effective length of database: 2,879,505,227
effective search space: 567262529719
effective search space used: 567262529719
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.7 bits)