RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780435|ref|YP_003064848.1| peptidase S11,
D-alanyl-D-alanine carboxypeptidase 1 [Candidatus Liberibacter
asiaticus str. psy62]
(336 letters)
>gnl|CDD|183117 PRK11397, dacD, D-alanyl-D-alanine carboxypeptidase; Provisional.
Length = 388
Score = 158 bits (402), Expect = 2e-39
Identities = 89/285 (31%), Positives = 136/285 (47%), Gaps = 23/285 (8%)
Query: 1 MRQFLVIIAMAMLSNIFPFLSIAETNKLPY--------YTLLDTNTGHVIAENYPDHPWN 52
+++ L+I A N+ + P + L+D TG ++ N
Sbjct: 1 LKRRLIIAASLFAFNLSSAFAAENIPFSPQPPAIDAGSWVLMDYTTGQILTAGNEHQQRN 60
Query: 53 PASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDNALKL-- 110
PASLTKLMT YVV + + +T+ ++A + N F S M L ++
Sbjct: 61 PASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDA--WAKDNPVFVGSSLMFLKEGDRVSV 118
Query: 111 ------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHFMNAHGVVQHGHY 164
LIV S ND VA+A+ + +++FV+ MNN + L L THF HG+ G +
Sbjct: 119 RDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYVEKLHLKDTHFETVHGLDAPGQH 178
Query: 165 TTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPNTN---WAVGTFLGADGMKTGFT 221
++A D+A+LS I P++ H + K L G N N W + DG+KTG T
Sbjct: 179 SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLW--DKTMNVDGLKTGHT 236
Query: 222 CASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASLLSMGFYN 266
+GFN++ASA+ G + LIAV++GA R + + LL G N
Sbjct: 237 SGAGFNLIASAVDGQRRLIAVVMGADSAKGREEQARKLLRWGQQN 281
>gnl|CDD|182189 PRK10001, PRK10001, D-alanyl-D-alanine carboxypeptidase fraction C;
Provisional.
Length = 400
Score = 157 bits (397), Expect = 6e-39
Identities = 91/245 (37%), Positives = 134/245 (54%), Gaps = 15/245 (6%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
+ L+D +G V+AE D +PASLTK+MT+YVV LK K LT +T+ K+A +
Sbjct: 42 WILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDA--WA 99
Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
N + S M L ++ +I++S ND +A+A+ + +++ F+ MN +
Sbjct: 100 TGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYA 159
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
K LGL+ T F HG+ G ++TARDMA+L + D P+ + K + PN
Sbjct: 160 KKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQPN 219
Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N W+ + L DGMKTG T +G+N+VASA QGD LI+V+LGA R S L
Sbjct: 220 RNRLLWS--SNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKL 277
Query: 260 LSMGF 264
L+ GF
Sbjct: 278 LTWGF 282
>gnl|CDD|182736 PRK10793, PRK10793, D-alanyl-D-alanine carboxypeptidase fraction A;
Provisional.
Length = 403
Score = 148 bits (375), Expect = 2e-36
Identities = 85/245 (34%), Positives = 127/245 (51%), Gaps = 15/245 (6%)
Query: 31 YTLLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYP 90
Y L+D N+G V+AE D +PASLTK+MT+YV+ +K K T +T+ +A +
Sbjct: 49 YILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDA--WA 106
Query: 91 PSNSTFKKGSTMTLDNALKL--------LIVKSANDIAVAIAESLCKTEKKFVQHMNNTS 142
N FK S M L +++ + ++S ND VA+A+ + ++ FV MN+
Sbjct: 107 TGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADYVAGSQDAFVGLMNSYV 166
Query: 143 KNLGLSATHFMNAHGVVQHGHYTTARDMAILSWRIKTDFPQYMHYFQIKGLEIKGKKYPN 202
LGL THF HG+ G Y++ARDMA++ + D P ++ K G + N
Sbjct: 167 NALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAIYKEKEFTFNGIRQLN 226
Query: 203 TN---WAVGTFLGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGALDRNTRNKVSASL 259
N W L DG+KTG T +G+N+VASA +G LI+ ++G R S L
Sbjct: 227 RNGLLW--DNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKGRETESKKL 284
Query: 260 LSMGF 264
L+ GF
Sbjct: 285 LTWGF 289
>gnl|CDD|183269 PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional.
Length = 306
Score = 62.4 bits (152), Expect = 2e-10
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 33 LLDTNTGHVIAENYPDHPWNPASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPS 92
++D NT VI + PD AS+TKLMTA VV L + IS E
Sbjct: 46 VVDLNTNKVIYSSNPDLVVPIASITKLMTAMVVLDAKLPLDEKL--KVDIS-QTPEMKGV 102
Query: 93 NSTFKKGSTMTLDNALKLLIVKSANDIAVAIAESLCKTEKKFVQHMNNTSKNLGLSATHF 152
S + S ++ + L L ++ S N A ++A K F++ MN +K LG++ T +
Sbjct: 103 YSRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKALGMTNTRY 162
Query: 153 MNAHGVVQHGHYTTARDMAIL 173
+ G+ H + +TARD+ L
Sbjct: 163 VEPTGLSIH-NVSTARDLTKL 182
>gnl|CDD|182627 PRK10662, PRK10662, beta-lactam binding protein AmpH; Provisional.
Length = 378
Score = 30.0 bits (68), Expect = 0.78
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 54 ASLTKLMTAYVVFSFLKEKKAMLTTPITISKNASEYPPSNSTFKKGSTMTLDN 106
AS+TKLMT+ V+ + LT P++ P+ + G +TL N
Sbjct: 86 ASITKLMTSEVLVKLADDGTVKLTDPLSKYAPPGARVPTYN----GQPITLLN 134
>gnl|CDD|182504 PRK10507, PRK10507, bifunctional glutathionylspermidine
amidase/glutathionylspermidine synthetase; Provisional.
Length = 619
Score = 30.0 bits (68), Expect = 0.99
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 158 VVQHGHYT---TARDMAILSWRIKTDFPQYM--------HYFQIKGLEIKGKKYPNTNW 205
VV++G YT T D IL W I+TD +Y +I G ++ K + W
Sbjct: 168 VVENGCYTLKDTFDDTTILGWMIQTDDTEYSLPQPEIAGELLKISGARLENKGQFDGKW 226
>gnl|CDD|180000 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 29.2 bits (67), Expect = 1.5
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 19/78 (24%)
Query: 265 YN-------KTDRKKINYIIKDFYQQNLSNEVPNISEEVCTTQKEIINYNTQMKEAKDKE 317
YN KT +KKI I+ Y+++ ++ +E+ +K I QMKEA
Sbjct: 578 YNEEHGITPKTIKKKIRDILDSVYKKDKLSK-----KEL---EKLIKELEKQMKEAAKNL 629
Query: 318 SHFIDFEKITLLKNKITK 335
+FE+ L+++I +
Sbjct: 630 ----EFEEAARLRDEIKE 643
>gnl|CDD|168614 PRK06567, PRK06567, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase; Validated.
Length = 1028
Score = 27.9 bits (62), Expect = 3.5
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 240 IAVILGALDRNTRNKVSASLLSMGFYNKTDRKKINYIIKDFYQQNLSNEVPNISEEVCTT 299
IAVI G L + A+ S+ +Y +K++ KD+ +++L+ E I+E
Sbjct: 553 IAVIGGGL-----TSLDAATESLYYY----KKQVEEFAKDYIEKDLTEEDKEIAE----- 598
Query: 300 QKEIINYNTQMKEAKDKESHFIDFEKI 326
E I + KEAK+ E F K+
Sbjct: 599 --EFIAHAKLFKEAKNNEELRKVFNKL 623
>gnl|CDD|162324 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 985
Score = 27.4 bits (61), Expect = 5.0
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 246 ALDRNTRNKVSASLLSMGFYNKT 268
A D N + A LLS GFY KT
Sbjct: 101 AFDIGAFNDLFAPLLSAGFYYKT 123
>gnl|CDD|178081 PLN02462, PLN02462, sedoheptulose-1,7-bisphosphatase.
Length = 304
Score = 27.0 bits (60), Expect = 6.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 7/35 (20%)
Query: 202 NTNWAVGTFLG---ADGMKTGFTCASGFNIVASAI 233
+TN+AVGT G D + T +G + VA+A+
Sbjct: 108 DTNFAVGTIFGVWPGDKL----TGVTGRDQVAAAM 138
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 26.9 bits (59), Expect = 7.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 17 FPFLSIAETNKLPYYTLLDTNTGHVIAENY 46
P + +A+ LP+Y L TN+G + Y
Sbjct: 126 LPMIDVAKDVSLPFYVFLTTNSGFLAMMQY 155
>gnl|CDD|178016 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein.
Length = 362
Score = 26.9 bits (60), Expect = 7.9
Identities = 9/20 (45%), Positives = 9/20 (45%)
Query: 138 MNNTSKNLGLSATHFMNAHG 157
M S NLGL NA G
Sbjct: 187 MKVLSVNLGLEEDRLQNAFG 206
>gnl|CDD|178699 PLN03154, PLN03154, putative allyl alcohol dehydrogenase;
Provisional.
Length = 348
Score = 26.7 bits (59), Expect = 8.6
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 211 LGADGMKTGFTCASGFNIVASAIQGDQSLIAVILGAL 247
LG GM GFT +GF V S +GD ++ GA+
Sbjct: 136 LGLLGM-AGFTAYAGFYEVCSPKKGDSVFVSAASGAV 171
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.131 0.377
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,191,773
Number of extensions: 315990
Number of successful extensions: 652
Number of sequences better than 10.0: 1
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 23
Length of query: 336
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 242
Effective length of database: 3,963,321
Effective search space: 959123682
Effective search space used: 959123682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)