HHsearch alignment for GI: 254780436 and conserved domain: COG0457
>COG0457 NrfG FOG: TPR repeat [General function prediction only].
Probab=98.02 E-value=2.7e-05 Score=45.54 Aligned_cols=171 Identities=23% Similarity=0.299 Sum_probs=111.9
Q ss_pred HHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCC---CCCCCCC
Q ss_conf 1999999-9999998199899999999999816899899999999-999729852222111111111111---1111211
Q gi|254780436|r 34 SVILLIE-GCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGV-VYGMNGDFEKALLDFQSALDLNPR---YYKVYAN 108 (298)
Q Consensus 34 ~~~~~~~-~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~ 108 (298)
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 172 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 35999999999999984399999999998733656426999999999998640999999999998749444678999999
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000001122221111112222111111122222222222111111111112111122222222222222221111111
Q gi|254780436|r 109 RALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGE 188 (298)
Q Consensus 109 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (298)
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------------------------- 200 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLNPDD---------------------------------------------------- 200 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------------------------
T ss_conf 9989887033999999999998628012----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 11222121111111122212222222222211111111222111223233388899999999999849989999999999
Q gi|254780436|r 189 YEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKA 268 (298)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kA 268 (298)
T Consensus 201 ------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 201 ------------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred ------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ------------------27999999999987525999999999998729101799999999988388699999999999
Q ss_pred HHHCCC
Q ss_conf 861799
Q gi|254780436|r 269 LSVDSR 274 (298)
Q Consensus 269 l~l~P~ 274 (298)
T Consensus 263 ~~~~~~ 268 (291)
T COG0457 263 LELDPD 268 (291)
T ss_pred HHHCHH
T ss_conf 987988