HHsearch alignment for GI: 254780436 and conserved domain: COG1729
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=98.13 E-value=1.8e-06 Score=51.94 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=39.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHH
Q ss_conf 22222211111111222111223233388---8999999999998499899999999998617999---89999999999
Q gi|254780436|r 213 GRGISYLATKNYDSALEDFKFAINLDPKK---ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY---YRAKNGILRIS 286 (298)
Q Consensus 213 ~~~~~~~~~~~~~~a~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~la~i~ 286 (298)
T Consensus 146 ~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 146 NAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99999998387889999999999709997556024999889998624616799999999983899998828999999999
Q ss_pred HHHHHHHHH
Q ss_conf 997428887
Q gi|254780436|r 287 QDLSSTVNE 295 (298)
Q Consensus 287 ~~lg~~~~~ 295 (298)
T Consensus 226 ~~l~~~d~A 234 (262)
T COG1729 226 GRLGNTDEA 234 (262)
T ss_pred HHHCCHHHH
T ss_conf 982177999