HHsearch alignment for GI: 254780436 and conserved domain: COG3063
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=99.42 E-value=1.8e-12 Score=84.60 Aligned_cols=190 Identities=21% Similarity=0.195 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 99999999999819989999999999981689989999999999972985222211111111111111112110000000
Q gi|254780436|r 36 ILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYK 115 (298)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (298)
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999778999999889999884952088999999999990775567999999985298864055210699970
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11222211111122221111111222222222221111111111121111222222222222222211111111122212
Q gi|254780436|r 116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED 195 (298)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (298)
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~---------------------------------------------------------- 136 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYG---------------------------------------------------------- 136 (250)
T ss_pred CCCHHHHHHHHHHHHHC-CCCC----------------------------------------------------------
T ss_conf 89868999999998718-8877----------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 11111111222122222222222111111112221112232333888999999999998499899999999998617999
Q gi|254780436|r 196 FSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 (298)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~ 275 (298)
T Consensus 137 ----------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~ 206 (250)
T COG3063 137 ----------EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ 206 (250)
T ss_pred ----------CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf ----------7530454457888643770447999999988375787678998798875313018999999997025665
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999742888
Q gi|254780436|r 276 YRAKNGILRISQDLSSTVN 294 (298)
Q Consensus 276 ~~a~~~la~i~~~lg~~~~ 294 (298)
T Consensus 207 A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 207 AESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HHHHHHHHHHHHHHCCHHH
T ss_conf 8999989999999654889