HHsearch alignment for GI: 254780436 and conserved domain: COG3063

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=99.42  E-value=1.8e-12  Score=84.60  Aligned_cols=190  Identities=21%  Similarity=0.195  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf             99999999999819989999999999981689989999999999972985222211111111111111112110000000
Q gi|254780436|r   36 ILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYK  115 (298)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  115 (298)
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~  115 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             99999999999778999999889999884952088999999999990775567999999985298864055210699970


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             11222211111122221111111222222222221111111111121111222222222222222211111111122212
Q gi|254780436|r  116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED  195 (298)
Q Consensus       116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (298)
T Consensus       116 qg~~~eA~q~F~~Al~~-P~Y~----------------------------------------------------------  136 (250)
T COG3063         116 QGRPEEAMQQFERALAD-PAYG----------------------------------------------------------  136 (250)
T ss_pred             CCCHHHHHHHHHHHHHC-CCCC----------------------------------------------------------
T ss_conf             89868999999998718-8877----------------------------------------------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             11111111222122222222222111111112221112232333888999999999998499899999999998617999
Q gi|254780436|r  196 FSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY  275 (298)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~  275 (298)
T Consensus       137 ----------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~  206 (250)
T COG3063         137 ----------EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ  206 (250)
T ss_pred             ----------CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf             ----------7530454457888643770447999999988375787678998798875313018999999997025665


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             8999999999999742888
Q gi|254780436|r  276 YRAKNGILRISQDLSSTVN  294 (298)
Q Consensus       276 ~~a~~~la~i~~~lg~~~~  294 (298)
T Consensus       207 A~sL~L~iriak~~gd~~~  225 (250)
T COG3063         207 AESLLLGIRIAKRLGDRAA  225 (250)
T ss_pred             HHHHHHHHHHHHHHCCHHH
T ss_conf             8999989999999654889