HHsearch alignment for GI: 254780436 and conserved domain: COG3898
>COG3898 Uncharacterized membrane-bound protein [Function unknown].
Probab=93.60 E-value=0.069 Score=27.07 Aligned_cols=249 Identities=15% Similarity=-0.004 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 723199999999999981998999999999998168998999999999--997298522221111111111111111211
Q gi|254780436|r 31 LVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVV--YGMNGDFEKALLDFQSALDLNPRYYKVYAN 108 (298)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (298)
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~A 193 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAML-DDPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARA 193 (531)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-CCHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 46458999999889886476187999999873-68388-77767889999986021899999999987636677167999
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0000000112222111111222211111112222-----22222221111111111121111222222222222222211
Q gi|254780436|r 109 RALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG-----RGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVY 183 (298)
Q Consensus 109 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (298)
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAral 273 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARAL 273 (531)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999866786889999998888775261167789899998888877248867788999987503876336999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 11111112221211111111222122222222222111111112221---112232333888999999999998499899
Q gi|254780436|r 184 QMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALED---FKFAINLDPKKASFWFNGGMVYEMQGSYAN 260 (298)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 260 (298)
T Consensus 274 f~d~~~rKg~~ilE~aWK~ePHP~------ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ 347 (531)
T COG3898 274 FRDGNLRKGSKILETAWKAEPHPD------IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA 347 (531)
T ss_pred HHCCCHHHHHHHHHHHHHCCCCHH------HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 742462433248899873499848------99999880479748899999999985284206788999999872256487
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999999986179998999999999999
Q gi|254780436|r 261 AVKYYKKALSVDSRYYRAKNGILRISQD 288 (298)
Q Consensus 261 A~~~~~kAl~l~P~~~~a~~~la~i~~~ 288 (298)
T Consensus 348 ARa~Aeaa~r~~pre-s~~lLlAdIeeA 374 (531)
T COG3898 348 ARAKAEAAAREAPRE-SAYLLLADIEEA 374 (531)
T ss_pred HHHHHHHHHHHCCHH-HHHHHHHHHHHH
T ss_conf 888899875307234-689998778763