HHsearch alignment for GI: 254780436 and conserved domain: COG3898

>COG3898 Uncharacterized membrane-bound protein [Function unknown].
Probab=93.60  E-value=0.069  Score=27.07  Aligned_cols=249  Identities=15%  Similarity=-0.004  Sum_probs=142.4

Q ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             723199999999999981998999999999998168998999999999--997298522221111111111111111211
Q gi|254780436|r   31 LVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVV--YGMNGDFEKALLDFQSALDLNPRYYKVYAN  108 (298)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  108 (298)
T Consensus       116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~A  193 (531)
T COG3898         116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAML-DDPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARA  193 (531)
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-CCHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             46458999999889886476187999999873-68388-77767889999986021899999999987636677167999


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0000000112222111111222211111112222-----22222221111111111121111222222222222222211
Q gi|254780436|r  109 RALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG-----RGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVY  183 (298)
Q Consensus       109 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (298)
T Consensus       194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAral  273 (531)
T COG3898         194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARAL  273 (531)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             99999866786889999998888775261167789899998888877248867788999987503876336999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             11111112221211111111222122222222222111111112221---112232333888999999999998499899
Q gi|254780436|r  184 QMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALED---FKFAINLDPKKASFWFNGGMVYEMQGSYAN  260 (298)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~  260 (298)
T Consensus       274 f~d~~~rKg~~ilE~aWK~ePHP~------ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~  347 (531)
T COG3898         274 FRDGNLRKGSKILETAWKAEPHPD------IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA  347 (531)
T ss_pred             HHCCCHHHHHHHHHHHHHCCCCHH------HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf             742462433248899873499848------99999880479748899999999985284206788999999872256487


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             9999999986179998999999999999
Q gi|254780436|r  261 AVKYYKKALSVDSRYYRAKNGILRISQD  288 (298)
Q Consensus       261 A~~~~~kAl~l~P~~~~a~~~la~i~~~  288 (298)
T Consensus       348 ARa~Aeaa~r~~pre-s~~lLlAdIeeA  374 (531)
T COG3898         348 ARAKAEAAAREAPRE-SAYLLLADIEEA  374 (531)
T ss_pred             HHHHHHHHHHHCCHH-HHHHHHHHHHHH
T ss_conf             888899875307234-689998778763