HHsearch alignment for GI: 254780436 and conserved domain: COG4105
>COG4105 ComL DNA uptake lipoprotein [General function prediction only].
Probab=98.07 E-value=7.9e-05 Score=43.06 Aligned_cols=201 Identities=16% Similarity=0.080 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3199999999999981998999999999998168998---9999999999972985222211111111111111112110
Q gi|254780436|r 33 VSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDP---EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANR 109 (298)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (298)
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 88999999999998637889999999999870999811289999999998813558999999999998789998716999
Q ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000011222211111122221111111222222222221111111111121111222222222222222211111111
Q gi|254780436|r 110 ALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEY 189 (298)
Q Consensus 110 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (298)
T Consensus 112 YlkgLs---------~~~~i~--~~~--------------rDq~~~~~A~~~f~~~i~ryPnS~Ya~d------------ 154 (254)
T COG4105 112 YLKGLS---------YFFQID--DVT--------------RDQSAARAAFAAFKELVQRYPNSRYAPD------------ 154 (254)
T ss_pred HHHHHH---------HHCCCC--CCC--------------CCHHHHHHHHHHHHHHHHHCCCCCCHHH------------
T ss_conf 999998---------752677--544--------------4779999999999999987889702355------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 1222121111111122212222222222211111111222111223233388---8999999999998499899999999
Q gi|254780436|r 190 EKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKK---ASFWFNGGMVYEMQGSYANAVKYYK 266 (298)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~ 266 (298)
T Consensus 155 --A~~~i~---~~~d-~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~-~~~ 227 (254)
T COG4105 155 --AKARIV---KLND-ALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK-KTA 227 (254)
T ss_pred --HHHHHH---HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHH-HHH
T ss_conf --999999---9999-988999999999999057699999999998714555204778999999999828727899-999
Q ss_pred HHHHHCCCCHH
Q ss_conf 99861799989
Q gi|254780436|r 267 KALSVDSRYYR 277 (298)
Q Consensus 267 kAl~l~P~~~~ 277 (298)
T Consensus 228 ~vl~~N~p~s~ 238 (254)
T COG4105 228 KVLGANYPDSQ 238 (254)
T ss_pred HHHHHCCCCCC
T ss_conf 99973689882