HHsearch alignment for GI: 254780436 and conserved domain: COG4105

>COG4105 ComL DNA uptake lipoprotein [General function prediction only].
Probab=98.07  E-value=7.9e-05  Score=43.06  Aligned_cols=201  Identities=16%  Similarity=0.080  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             3199999999999981998999999999998168998---9999999999972985222211111111111111112110
Q gi|254780436|r   33 VSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDP---EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANR  109 (298)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  109 (298)
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf             88999999999998637889999999999870999811289999999998813558999999999998789998716999


Q ss_pred             CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00000011222211111122221111111222222222221111111111121111222222222222222211111111
Q gi|254780436|r  110 ALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEY  189 (298)
Q Consensus       110 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (298)
T Consensus       112 YlkgLs---------~~~~i~--~~~--------------rDq~~~~~A~~~f~~~i~ryPnS~Ya~d------------  154 (254)
T COG4105         112 YLKGLS---------YFFQID--DVT--------------RDQSAARAAFAAFKELVQRYPNSRYAPD------------  154 (254)
T ss_pred             HHHHHH---------HHCCCC--CCC--------------CCHHHHHHHHHHHHHHHHHCCCCCCHHH------------
T ss_conf             999998---------752677--544--------------4779999999999999987889702355------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             1222121111111122212222222222211111111222111223233388---8999999999998499899999999
Q gi|254780436|r  190 EKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKK---ASFWFNGGMVYEMQGSYANAVKYYK  266 (298)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~  266 (298)
T Consensus       155 --A~~~i~---~~~d-~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~-~~~  227 (254)
T COG4105         155 --AKARIV---KLND-ALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK-KTA  227 (254)
T ss_pred             --HHHHHH---HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHH-HHH
T ss_conf             --999999---9999-988999999999999057699999999998714555204778999999999828727899-999


Q ss_pred             HHHHHCCCCHH
Q ss_conf             99861799989
Q gi|254780436|r  267 KALSVDSRYYR  277 (298)
Q Consensus       267 kAl~l~P~~~~  277 (298)
T Consensus       228 ~vl~~N~p~s~  238 (254)
T COG4105         228 KVLGANYPDSQ  238 (254)
T ss_pred             HHHHHCCCCCC
T ss_conf             99973689882