HHsearch alignment for GI: 254780436 and conserved domain: COG4105

>COG4105 ComL DNA uptake lipoprotein [General function prediction only].
Probab=95.83  E-value=0.0042  Score=33.68  Aligned_cols=184  Identities=14%  Similarity=0.103  Sum_probs=111.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9899999999999729852222111111111111111---1211000000011222211111122221111111222222
Q gi|254780436|r   68 DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK---VYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRG  144 (298)
Q Consensus        68 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  144 (298)
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf             89999999999986378899999999998709998112899999999988135589999999999987899987169999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22222111111111112111122222222222222221111111112221211111111222122222222222111111
Q gi|254780436|r  145 NIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNY  224 (298)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (298)
T Consensus       113 lkgLs-------------------------~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~-----~~i---  159 (254)
T COG4105         113 LKGLS-------------------------YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK-----ARI---  159 (254)
T ss_pred             HHHHH-------------------------HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH-----HHH---
T ss_conf             99998-------------------------752677544477999999999999998788970235599-----999---


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHHHH
Q ss_conf             11222111223233388899999999999849989999999999861799989999---99999999742888
Q gi|254780436|r  225 DSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKN---GILRISQDLSSTVN  294 (298)
Q Consensus       225 ~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~---~la~i~~~lg~~~~  294 (298)
T Consensus       160 ----------~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~  222 (254)
T COG4105         160 ----------VKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDE  222 (254)
T ss_pred             ----------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf             ----------999999889999999999990576999999999987145552047789999999998287278