HHsearch alignment for GI: 254780436 and conserved domain: COG4105
>COG4105 ComL DNA uptake lipoprotein [General function prediction only].
Probab=95.83 E-value=0.0042 Score=33.68 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9899999999999729852222111111111111111---1211000000011222211111122221111111222222
Q gi|254780436|r 68 DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK---VYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRG 144 (298)
Q Consensus 68 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (298)
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 89999999999986378899999999998709998112899999999988135589999999999987899987169999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222111111111112111122222222222222221111111112221211111111222122222222222111111
Q gi|254780436|r 145 NIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNY 224 (298)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (298)
T Consensus 113 lkgLs-------------------------~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~-----~~i--- 159 (254)
T COG4105 113 LKGLS-------------------------YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK-----ARI--- 159 (254)
T ss_pred HHHHH-------------------------HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH-----HHH---
T ss_conf 99998-------------------------752677544477999999999999998788970235599-----999---
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHHHH
Q ss_conf 11222111223233388899999999999849989999999999861799989999---99999999742888
Q gi|254780436|r 225 DSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKN---GILRISQDLSSTVN 294 (298)
Q Consensus 225 ~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~---~la~i~~~lg~~~~ 294 (298)
T Consensus 160 ----------~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~ 222 (254)
T COG4105 160 ----------VKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDE 222 (254)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf ----------999999889999999999990576999999999987145552047789999999998287278