HHsearch alignment for GI: 254780436 and conserved domain: COG4785
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only].
Probab=97.84 E-value=9.7e-06 Score=47.99 Aligned_cols=105 Identities=23% Similarity=0.268 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98999999999997298522221111111111111111211000000011222211111122221111111222222222
Q gi|254780436|r 68 DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIY 147 (298)
Q Consensus 68 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCCEEE
T ss_conf 88998861203422407999860145666349675899989999998602205799986667104775107776044023
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 221111111111121111222222222
Q gi|254780436|r 148 RDERYSDLQKAFADFDRAIQLKTSDGR 174 (298)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (298)
T Consensus 144 YY~--gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 144 YYG--GRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred EEC--CCCHHHHHHHHHHHHCCCCCHH
T ss_conf 444--7515559999999844989807