HHsearch alignment for GI: 254780436 and conserved domain: PRK06330
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated.
Probab=95.50 E-value=0.0089 Score=31.90 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 998999999999998168998999999999997298522221111111
Q gi|254780436|r 49 MGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSAL 96 (298)
Q Consensus 49 ~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 96 (298)
T Consensus 131 ~~n~el~~iwerlv~~D~~~~e~~~~~a~~~e~~-d~~kai~y~k~A~ 177 (906)
T PRK06330 131 KKNKELKVIWERLVKADRDNPEIVKKLATSYEEE-DKEKSITYLKKAI 177 (906)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_conf 5774389999999971344668999998888740-2688999999999