HHsearch alignment for GI: 254780436 and conserved domain: TIGR02795

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.53  E-value=8.9e-08  Score=59.06  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCH
Q ss_conf             9999999998199899999999999816899---8999999999997298522221111111111111---111211000
Q gi|254780436|r   38 LIEGCSSLFPSMGRRVNIDSLTAVIRAHPSD---PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY---YKVYANRAL  111 (298)
Q Consensus        38 ~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~  111 (298)
T Consensus         5 ~y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKlg~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             89999999853887899999999988687987671054799999999733999999999998645899860689999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0000112222111111222211111112
Q gi|254780436|r  112 IRYKMGDVPMAIRDYGTALKINPDYDVA  139 (298)
Q Consensus       112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~  139 (298)
T Consensus        85 ~~~~~g~~~~A~~~l~~V~~~YP~s~aA  112 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf             9987289889999999998566998788