HHsearch alignment for GI: 254780436 and conserved domain: TIGR02795
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.53 E-value=8.9e-08 Score=59.06 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=78.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCH
Q ss_conf 9999999998199899999999999816899---8999999999997298522221111111111111---111211000
Q gi|254780436|r 38 LIEGCSSLFPSMGRRVNIDSLTAVIRAHPSD---PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY---YKVYANRAL 111 (298)
Q Consensus 38 ~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~ 111 (298)
T Consensus 5 ~y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKlg~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 89999999853887899999999988687987671054799999999733999999999998645899860689999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0000112222111111222211111112
Q gi|254780436|r 112 IRYKMGDVPMAIRDYGTALKINPDYDVA 139 (298)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (298)
T Consensus 85 ~~~~~g~~~~A~~~l~~V~~~YP~s~aA 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9987289889999999998566998788