HHsearch alignment for GI: 254780436 and conserved domain: TIGR02917

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein; InterPro: IPR014266 This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system , analogous to the LPXTG/sortase system common in Gram-positive bacteria. The proteins in this entry occur in a species if, and only if, a transmembrane histidine kinase (IPR014265 from INTERPRO) and a DNA-binding response regulator (IPR014264 from INTERPRO) also occur. The present of tetratricopeptide repeats (TPR) suggests they may be involved in protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator..
Probab=99.93  E-value=2.1e-26  Score=160.11  Aligned_cols=250  Identities=20%  Similarity=0.214  Sum_probs=132.7

Q ss_pred             HHHHCCC---HHHHHHHH--------HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             9998199---89999999--------999981689989999999999972985222211111111111111112110000
Q gi|254780436|r   44 SLFPSMG---RRVNIDSL--------TAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALI  112 (298)
Q Consensus        44 ~~~~~~~---~~~Ai~~~--------~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  112 (298)
T Consensus       279 v~~q~~~naG~~~A~~~~aqvlDhls~~~l~~~p~~~~a~~lAG~~~y~lg~~~~A~~yl~~~l~~~P~~~~A~rllA~i  358 (924)
T TIGR02917       279 VDFQKKNNAGYEDARETLAQVLDHLSQAALKSAPEYLPALLLAGASEYQLGNLEQAEQYLNQILKAAPNSHQARRLLAAI  358 (924)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             99983357744899999999999999999961877425999999999996138999999999998668866899999999


Q ss_pred             HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00011222211111122221111111222222222221111111111121111222222222222222211111111122
Q gi|254780436|r  113 RYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKS  192 (298)
Q Consensus       113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (298)
T Consensus       359 ~L~~g~~~~A~~~l~~~~~~~~~d~~~l~~lG~~~L--~~g~~~~A~~yl~ka~~~~P~~a~~~t~lG~~~L~~Gd~~~A  436 (924)
T TIGR02917       359 QLREGRVDEAIATLSPALGLDSDDSALLSLLGEAYL--AKGDFEKAAEYLAKASELDPENAAARTKLGISKLSQGDPSEA  436 (924)
T ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf             986289789999999886158877689999999998--638967899999876105898088999999886206883478


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             21211111111222122222222222111111112221112232333888999999999998499899999999998617
Q gi|254780436|r  193 IEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD  272 (298)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~  272 (298)
T Consensus       437 i~dL~~A~~l~~~~-~~a~~~L~~~yL~~~~~dKAla~~~~l~~~~pd~p~~~nl~G~i~l~~~~~~kA~~~f~~AL~i~  515 (924)
T TIGR02917       437 IADLETAAQLDPEL-GRADLLLILSYLRSGEFDKALAAAKKLEKKQPDNPSLHNLLGAIYLGKKDLAKAREAFEKALKIE  515 (924)
T ss_pred             HHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             99999999727775-34789999988742048999999999975288982689999999985178789999999875318


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999899999999999974288874
Q gi|254780436|r  273 SRYYRAKNGILRISQDLSSTVNEV  296 (298)
Q Consensus       273 P~~~~a~~~la~i~~~lg~~~~~~  296 (298)
T Consensus       516 p~~~~A~~nLA~~d~~~~~~~~A~  539 (924)
T TIGR02917       516 PDFFPAAANLARIDLQEGNPDDAK  539 (924)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf             778478999999887428968999