HHsearch alignment for GI: 254780436 and conserved domain: TIGR02917
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein; InterPro: IPR014266 This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system , analogous to the LPXTG/sortase system common in Gram-positive bacteria. The proteins in this entry occur in a species if, and only if, a transmembrane histidine kinase (IPR014265 from INTERPRO) and a DNA-binding response regulator (IPR014264 from INTERPRO) also occur. The present of tetratricopeptide repeats (TPR) suggests they may be involved in protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator..
Probab=99.93 E-value=2.1e-26 Score=160.11 Aligned_cols=250 Identities=20% Similarity=0.214 Sum_probs=132.7
Q ss_pred HHHHCCC---HHHHHHHH--------HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 9998199---89999999--------999981689989999999999972985222211111111111111112110000
Q gi|254780436|r 44 SLFPSMG---RRVNIDSL--------TAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALI 112 (298)
Q Consensus 44 ~~~~~~~---~~~Ai~~~--------~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (298)
T Consensus 279 v~~q~~~naG~~~A~~~~aqvlDhls~~~l~~~p~~~~a~~lAG~~~y~lg~~~~A~~yl~~~l~~~P~~~~A~rllA~i 358 (924)
T TIGR02917 279 VDFQKKNNAGYEDARETLAQVLDHLSQAALKSAPEYLPALLLAGASEYQLGNLEQAEQYLNQILKAAPNSHQARRLLAAI 358 (924)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99983357744899999999999999999961877425999999999996138999999999998668866899999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00011222211111122221111111222222222221111111111121111222222222222222211111111122
Q gi|254780436|r 113 RYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKS 192 (298)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (298)
T Consensus 359 ~L~~g~~~~A~~~l~~~~~~~~~d~~~l~~lG~~~L--~~g~~~~A~~yl~ka~~~~P~~a~~~t~lG~~~L~~Gd~~~A 436 (924)
T TIGR02917 359 QLREGRVDEAIATLSPALGLDSDDSALLSLLGEAYL--AKGDFEKAAEYLAKASELDPENAAARTKLGISKLSQGDPSEA 436 (924)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 986289789999999886158877689999999998--638967899999876105898088999999886206883478
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 21211111111222122222222222111111112221112232333888999999999998499899999999998617
Q gi|254780436|r 193 IEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 (298)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~ 272 (298)
T Consensus 437 i~dL~~A~~l~~~~-~~a~~~L~~~yL~~~~~dKAla~~~~l~~~~pd~p~~~nl~G~i~l~~~~~~kA~~~f~~AL~i~ 515 (924)
T TIGR02917 437 IADLETAAQLDPEL-GRADLLLILSYLRSGEFDKALAAAKKLEKKQPDNPSLHNLLGAIYLGKKDLAKAREAFEKALKIE 515 (924)
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999999727775-34789999988742048999999999975288982689999999985178789999999875318
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999899999999999974288874
Q gi|254780436|r 273 SRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 273 P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
T Consensus 516 p~~~~A~~nLA~~d~~~~~~~~A~ 539 (924)
T TIGR02917 516 PDFFPAAANLARIDLQEGNPDDAK 539 (924)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 778478999999887428968999