Query gi|254780436|ref|YP_003064849.1| hypothetical protein CLIBASIA_01605 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 298
No_of_seqs 553 out of 28459
Neff 12.7
Searched_HMMs 39220
Date Mon May 30 01:57:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780436.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 consensus 100.0 1.8E-37 4.6E-42 220.2 0.5 279 16-297 198-477 (966)
2 KOG4626 consensus 100.0 7.2E-34 1.8E-38 200.7 0.6 274 19-295 167-441 (966)
3 TIGR02917 PEP_TPR_lipo putativ 99.9 2.1E-26 5.5E-31 160.1 4.8 250 44-296 279-539 (924)
4 TIGR02917 PEP_TPR_lipo putativ 99.9 2.6E-25 6.7E-30 154.2 6.3 276 18-296 289-573 (924)
5 KOG1126 consensus 99.9 3.2E-23 8.2E-28 142.9 5.4 252 42-296 326-611 (638)
6 KOG0547 consensus 99.9 9E-24 2.3E-28 145.9 2.3 261 35-296 115-448 (606)
7 KOG1125 consensus 99.9 1.7E-23 4.3E-28 144.4 2.9 232 36-296 286-518 (579)
8 KOG0547 consensus 99.9 1.6E-23 4.1E-28 144.5 1.8 76 16-91 129-205 (606)
9 KOG1126 consensus 99.9 1E-22 2.6E-27 140.2 3.1 261 16-279 367-628 (638)
10 KOG2076 consensus 99.8 3.4E-21 8.8E-26 131.9 5.1 93 204-296 410-503 (895)
11 KOG1173 consensus 99.8 2.4E-21 6E-26 132.8 2.6 247 40-288 283-535 (611)
12 KOG1173 consensus 99.8 1.3E-19 3.3E-24 123.3 5.8 267 28-297 237-510 (611)
13 KOG0624 consensus 99.8 6.8E-20 1.7E-24 124.8 3.2 250 38-287 41-386 (504)
14 KOG1155 consensus 99.8 3E-19 7.7E-24 121.3 6.5 246 48-296 240-486 (559)
15 TIGR00990 3a0801s09 mitochondr 99.8 1.5E-19 3.8E-24 123.0 1.3 112 180-292 370-481 (649)
16 KOG0550 consensus 99.8 6.2E-19 1.6E-23 119.6 4.4 261 35-297 49-342 (486)
17 KOG2002 consensus 99.7 3E-19 7.6E-24 121.3 2.4 239 52-290 147-390 (1018)
18 KOG0548 consensus 99.7 3E-19 7.7E-24 121.3 1.0 281 14-296 14-446 (539)
19 KOG2002 consensus 99.7 6.5E-19 1.6E-23 119.5 0.3 258 28-287 157-425 (1018)
20 KOG1155 consensus 99.7 6.1E-18 1.6E-22 114.2 4.1 258 32-292 258-523 (559)
21 TIGR00990 3a0801s09 mitochondr 99.7 4.1E-18 1.1E-22 115.1 2.5 244 50-296 337-596 (649)
22 KOG1125 consensus 99.7 9.7E-17 2.5E-21 107.7 4.8 251 11-293 296-559 (579)
23 PRK11447 cellulose synthase su 99.6 1.9E-16 4.8E-21 106.2 4.1 257 37-296 272-550 (1158)
24 KOG1129 consensus 99.6 6.5E-17 1.7E-21 108.6 -0.0 245 41-288 229-475 (478)
25 TIGR02521 type_IV_pilW type IV 99.6 3.5E-15 8.8E-20 99.3 8.7 191 35-294 37-234 (247)
26 KOG4162 consensus 99.6 3.6E-16 9.1E-21 104.6 0.8 243 51-296 460-774 (799)
27 KOG0548 consensus 99.6 1.8E-16 4.7E-21 106.2 -0.8 260 37-297 4-413 (539)
28 KOG1174 consensus 99.5 4.9E-15 1.3E-19 98.4 4.8 285 2-290 196-519 (564)
29 PRK02603 photosystem I assembl 99.5 8.1E-15 2.1E-19 97.3 4.5 82 211-292 38-122 (172)
30 KOG2076 consensus 99.5 1.7E-14 4.4E-19 95.5 5.9 287 10-296 181-546 (895)
31 KOG1127 consensus 99.5 1.8E-15 4.5E-20 100.8 0.2 291 3-296 492-904 (1238)
32 PRK02603 photosystem I assembl 99.5 1.5E-14 3.8E-19 95.9 4.7 76 44-119 44-122 (172)
33 PRK11788 hypothetical protein; 99.5 1.4E-14 3.7E-19 95.9 4.3 221 41-294 41-267 (389)
34 KOG2003 consensus 99.5 1.1E-15 2.7E-20 102.1 -2.2 78 214-291 496-573 (840)
35 KOG0553 consensus 99.5 1.3E-14 3.3E-19 96.2 2.1 112 36-147 82-193 (304)
36 KOG0495 consensus 99.5 6.1E-14 1.5E-18 92.5 5.4 259 17-282 633-891 (913)
37 KOG0550 consensus 99.5 1.9E-14 5E-19 95.2 2.5 269 18-289 65-367 (486)
38 PRK11447 cellulose synthase su 99.5 6.9E-14 1.8E-18 92.2 5.2 70 218-287 362-431 (1158)
39 TIGR02521 type_IV_pilW type IV 99.5 1.6E-14 4.1E-19 95.6 1.6 159 69-296 37-199 (247)
40 PRK11189 lipoprotein NlpI; Pro 99.4 1E-13 2.5E-18 91.4 5.1 221 36-295 65-294 (297)
41 KOG1840 consensus 99.4 1.6E-14 4.2E-19 95.6 0.6 233 36-296 200-470 (508)
42 CHL00033 ycf3 photosystem I as 99.4 3.2E-13 8.1E-18 88.6 6.6 89 208-296 31-122 (165)
43 COG3063 PilF Tfp pilus assembl 99.4 1.8E-12 4.5E-17 84.6 10.3 190 36-294 36-225 (250)
44 KOG1129 consensus 99.4 7.8E-15 2E-19 97.4 -3.1 219 73-295 227-448 (478)
45 KOG1156 consensus 99.4 2.1E-14 5.3E-19 95.0 -1.5 121 12-132 51-172 (700)
46 KOG0553 consensus 99.4 8.1E-14 2.1E-18 91.9 1.4 110 180-290 88-197 (304)
47 KOG4648 consensus 99.4 1.1E-14 2.7E-19 96.6 -3.1 256 31-289 93-348 (536)
48 KOG2003 consensus 99.4 1.1E-14 2.7E-19 96.7 -3.3 239 51-292 472-710 (840)
49 KOG4162 consensus 99.4 2E-13 5.1E-18 89.7 3.0 253 22-277 464-789 (799)
50 cd00189 TPR Tetratricopeptide 99.4 4.1E-13 1.1E-17 88.0 3.6 95 40-134 5-99 (100)
51 KOG0495 consensus 99.3 8.5E-13 2.2E-17 86.3 4.2 212 76-294 658-869 (913)
52 KOG1127 consensus 99.3 8.3E-12 2.1E-16 80.9 8.4 82 214-295 568-649 (1238)
53 KOG0624 consensus 99.3 2.3E-13 5.7E-18 89.4 0.2 228 64-294 33-278 (504)
54 cd00189 TPR Tetratricopeptide 99.3 2E-12 5E-17 84.3 5.0 87 211-297 3-89 (100)
55 COG3063 PilF Tfp pilus assembl 99.3 9.4E-13 2.4E-17 86.1 3.1 156 69-295 35-192 (250)
56 PRK10747 putative protoheme IX 99.3 3.3E-12 8.5E-17 83.1 3.7 273 19-296 101-381 (398)
57 KOG1174 consensus 99.2 8E-13 2E-17 86.4 -0.2 244 49-295 212-457 (564)
58 PRK11788 hypothetical protein; 99.2 3.2E-12 8.3E-17 83.1 2.4 265 16-282 49-322 (389)
59 KOG1840 consensus 99.2 3E-11 7.6E-16 77.9 4.3 244 14-285 211-501 (508)
60 COG2956 Predicted N-acetylgluc 99.1 2.5E-11 6.3E-16 78.4 0.9 216 44-296 44-269 (389)
61 KOG1156 consensus 99.0 3.5E-11 8.8E-16 77.6 0.2 253 33-287 5-264 (700)
62 KOG0543 consensus 99.0 4.3E-10 1.1E-14 71.6 5.3 115 179-293 214-342 (397)
63 KOG1130 consensus 99.0 2.5E-10 6.5E-15 72.9 2.8 262 35-297 17-329 (639)
64 PRK10049 pgaA outer membrane p 99.0 3.3E-10 8.5E-15 72.2 3.1 261 33-294 97-498 (818)
65 PRK10747 putative protoheme IX 98.9 5.4E-10 1.4E-14 71.1 3.6 255 10-271 126-390 (398)
66 CHL00033 ycf3 photosystem I as 98.9 2.1E-10 5.4E-15 73.3 0.3 76 46-121 42-120 (165)
67 KOG0543 consensus 98.9 1.6E-09 4.2E-14 68.5 4.9 86 212-297 212-312 (397)
68 COG3071 HemY Uncharacterized e 98.9 2E-09 5E-14 68.0 5.0 258 33-295 116-380 (400)
69 KOG1128 consensus 98.9 1.5E-10 3.7E-15 74.2 -1.6 109 186-295 498-606 (777)
70 COG4785 NlpI Lipoprotein NlpI, 98.8 1.1E-09 2.7E-14 69.5 2.0 212 43-289 72-288 (297)
71 TIGR03302 OM_YfiO outer membra 98.8 2.1E-09 5.4E-14 67.9 3.5 192 33-270 31-231 (235)
72 PRK11189 lipoprotein NlpI; Pro 98.8 1.8E-09 4.5E-14 68.3 3.0 95 53-147 45-143 (297)
73 KOG3060 consensus 98.8 4.5E-08 1.2E-12 60.6 9.4 180 43-293 60-242 (289)
74 COG5010 TadD Flp pilus assembl 98.8 2.7E-09 7E-14 67.3 2.7 102 40-141 105-206 (257)
75 COG5010 TadD Flp pilus assembl 98.8 5.3E-09 1.3E-13 65.7 3.2 104 190-294 117-220 (257)
76 KOG2376 consensus 98.7 1.1E-09 2.8E-14 69.5 -0.8 89 38-127 15-103 (652)
77 COG4783 Putative Zn-dependent 98.7 9.2E-08 2.4E-12 59.0 8.5 125 171-296 304-428 (484)
78 PRK12370 invasion protein regu 98.7 1.6E-09 4E-14 68.6 -0.6 180 51-232 277-465 (553)
79 pfam04733 Coatomer_E Coatomer 98.7 6E-09 1.5E-13 65.4 1.7 244 41-296 7-255 (290)
80 TIGR02552 LcrH_SycD type III s 98.7 1.8E-08 4.6E-13 62.8 4.0 104 35-138 18-122 (137)
81 TIGR02552 LcrH_SycD type III s 98.7 1E-08 2.6E-13 64.2 2.3 87 210-296 20-106 (137)
82 KOG1128 consensus 98.7 1.2E-08 3E-13 63.8 2.6 84 212-295 489-572 (777)
83 COG2956 Predicted N-acetylgluc 98.6 9.4E-09 2.4E-13 64.4 1.2 236 16-285 49-291 (389)
84 KOG0376 consensus 98.6 3.1E-09 7.9E-14 67.0 -1.7 109 37-145 6-114 (476)
85 COG4235 Cytochrome c biogenesi 98.6 2.4E-07 6.2E-12 56.7 7.9 131 156-287 139-272 (287)
86 KOG4234 consensus 98.6 1.6E-08 4E-13 63.2 1.7 107 180-286 102-212 (271)
87 PRK10370 formate-dependent nit 98.6 6E-09 1.5E-13 65.4 -1.0 125 50-276 62-186 (206)
88 PRK12370 invasion protein regu 98.5 2.3E-08 5.8E-13 62.3 1.5 254 19-275 278-549 (553)
89 KOG4648 consensus 98.5 5.3E-08 1.4E-12 60.3 3.1 216 72-292 100-317 (536)
90 TIGR02795 tol_pal_ybgF tol-pal 98.5 8.9E-08 2.3E-12 59.1 4.2 102 38-139 5-112 (119)
91 TIGR02795 tol_pal_ybgF tol-pal 98.5 4E-08 1E-12 60.9 2.2 85 212-296 6-96 (119)
92 KOG4234 consensus 98.5 5.2E-08 1.3E-12 60.3 1.8 106 35-140 95-205 (271)
93 KOG4340 consensus 98.5 7.4E-08 1.9E-12 59.5 2.2 85 43-127 18-102 (459)
94 COG4783 Putative Zn-dependent 98.4 9.8E-07 2.5E-11 53.4 7.5 125 162-287 329-453 (484)
95 PRK10370 formate-dependent nit 98.4 4.6E-07 1.2E-11 55.2 5.7 119 21-139 66-188 (206)
96 PRK10803 hypothetical protein; 98.4 9.9E-08 2.5E-12 58.8 1.8 100 186-285 155-259 (262)
97 COG3071 HemY Uncharacterized e 98.4 2.9E-07 7.4E-12 56.3 3.7 252 12-271 128-390 (400)
98 KOG4642 consensus 98.4 7.2E-08 1.8E-12 59.5 0.4 99 34-132 9-107 (284)
99 TIGR03302 OM_YfiO outer membra 98.3 3.7E-07 9.4E-12 55.7 2.9 183 67-295 31-222 (235)
100 COG0457 NrfG FOG: TPR repeat [ 98.3 3.9E-06 9.9E-11 50.2 8.0 182 39-288 63-248 (291)
101 KOG3785 consensus 98.3 7.4E-08 1.9E-12 59.5 -1.5 54 42-95 64-117 (557)
102 KOG4642 consensus 98.3 8.9E-07 2.3E-11 53.6 3.9 81 19-99 27-108 (284)
103 PRK10803 hypothetical protein; 98.2 1.6E-06 4.2E-11 52.2 4.5 79 218-296 152-236 (262)
104 pfam00515 TPR_1 Tetratricopept 98.2 2.1E-06 5.3E-11 51.6 4.3 34 242-275 1-34 (34)
105 KOG3060 consensus 98.1 5.2E-07 1.3E-11 54.9 0.7 150 21-170 71-222 (289)
106 COG1729 Uncharacterized protei 98.1 1.8E-06 4.6E-11 51.9 3.2 83 213-295 146-234 (262)
107 COG4235 Cytochrome c biogenesi 98.1 5.2E-06 1.3E-10 49.5 5.4 100 196-296 145-247 (287)
108 KOG3785 consensus 98.1 1.3E-06 3.3E-11 52.8 2.2 249 38-291 154-443 (557)
109 PRK10866 outer membrane protei 98.1 2.3E-06 5.9E-11 51.4 3.1 203 33-272 30-241 (243)
110 pfam04733 Coatomer_E Coatomer 98.1 3.3E-06 8.5E-11 50.5 3.8 192 49-280 80-274 (290)
111 COG4105 ComL DNA uptake lipopr 98.1 7.9E-05 2E-09 43.1 10.6 201 33-277 32-238 (254)
112 KOG3081 consensus 98.0 2.5E-06 6.4E-11 51.2 2.4 240 40-293 13-258 (299)
113 COG1729 Uncharacterized protei 98.0 4.1E-06 1E-10 50.0 3.4 110 176-285 144-258 (262)
114 KOG1308 consensus 98.0 4E-07 1E-11 55.5 -1.9 98 39-136 118-215 (377)
115 COG0457 NrfG FOG: TPR repeat [ 98.0 2.7E-05 7E-10 45.5 7.5 171 34-274 93-268 (291)
116 KOG4555 consensus 98.0 4.9E-06 1.2E-10 49.6 3.1 97 41-137 49-149 (175)
117 PRK10049 pgaA outer membrane p 98.0 1E-05 2.6E-10 47.9 4.6 91 48-138 78-168 (818)
118 KOG4555 consensus 97.9 9.6E-06 2.4E-10 48.0 4.1 86 211-296 46-135 (175)
119 smart00028 TPR Tetratricopepti 97.9 1.5E-05 3.7E-10 47.0 4.1 34 242-275 1-34 (34)
120 pfam09295 ChAPs ChAPs (Chs5p-A 97.8 2.8E-05 7.2E-10 45.5 5.0 110 18-129 185-294 (395)
121 COG4785 NlpI Lipoprotein NlpI, 97.8 9.7E-06 2.5E-10 48.0 2.6 105 68-174 64-168 (297)
122 KOG0551 consensus 97.8 1.4E-05 3.7E-10 47.1 3.5 97 38-134 84-184 (390)
123 KOG2053 consensus 97.8 8.8E-06 2.2E-10 48.2 1.8 226 46-275 20-259 (932)
124 KOG2376 consensus 97.8 2.3E-06 5.8E-11 51.4 -1.2 102 36-137 111-258 (652)
125 KOG0376 consensus 97.8 7.7E-06 2E-10 48.5 1.4 100 17-116 19-119 (476)
126 pfam09295 ChAPs ChAPs (Chs5p-A 97.8 6.6E-05 1.7E-09 43.5 5.8 88 209-296 201-288 (395)
127 KOG0551 consensus 97.7 1.1E-05 2.8E-10 47.7 1.2 84 20-103 99-187 (390)
128 KOG1308 consensus 97.7 8.6E-06 2.2E-10 48.3 0.5 83 189-272 130-212 (377)
129 pfam07719 TPR_2 Tetratricopept 97.6 4.6E-05 1.2E-09 44.3 3.2 33 243-275 2-34 (34)
130 PRK10941 putative transcriptio 97.5 0.00022 5.5E-09 40.7 5.3 76 210-285 183-258 (269)
131 KOG1130 consensus 97.5 2.3E-05 5.9E-10 45.9 -0.0 280 16-297 31-376 (639)
132 KOG3824 consensus 97.4 0.00024 6.1E-09 40.5 4.9 80 34-113 115-194 (472)
133 KOG4507 consensus 97.4 6.2E-05 1.6E-09 43.6 1.9 94 10-103 221-317 (886)
134 KOG0545 consensus 97.4 7.5E-05 1.9E-09 43.2 1.5 104 176-279 181-301 (329)
135 KOG2796 consensus 97.3 0.0018 4.7E-08 35.6 8.6 117 170-286 209-333 (366)
136 KOG1070 consensus 97.3 7.4E-06 1.9E-10 48.6 -3.7 224 52-278 1441-1670(1710)
137 pfam00515 TPR_1 Tetratricopept 97.3 6.4E-05 1.6E-09 43.6 0.7 34 69-102 1-34 (34)
138 KOG3824 consensus 97.2 0.00014 3.5E-09 41.8 1.9 65 79-143 126-190 (472)
139 PRK10866 outer membrane protei 97.2 8E-05 2E-09 43.0 0.3 197 67-296 30-232 (243)
140 KOG0545 consensus 97.2 0.00081 2.1E-08 37.6 5.0 83 209-291 179-279 (329)
141 PRK10941 putative transcriptio 97.1 0.00092 2.3E-08 37.3 4.7 56 242-297 181-236 (269)
142 cd05804 StaR_like StaR_like; a 97.1 0.0026 6.7E-08 34.8 6.9 59 72-130 117-175 (355)
143 KOG1915 consensus 97.0 0.00018 4.7E-09 41.1 0.9 74 220-294 416-489 (677)
144 KOG1915 consensus 97.0 0.0002 5.2E-09 40.8 1.1 53 219-271 448-500 (677)
145 KOG4340 consensus 97.0 0.00029 7.4E-09 40.0 1.8 55 43-97 152-206 (459)
146 smart00028 TPR Tetratricopepti 96.9 0.00028 7.1E-09 40.1 0.5 34 69-102 1-34 (34)
147 PRK09782 bacteriophage N4 rece 96.7 0.0076 1.9E-07 32.3 6.8 69 220-289 588-656 (987)
148 KOG2796 consensus 96.6 0.00041 1E-08 39.2 -0.3 119 179-297 183-307 (366)
149 KOG1070 consensus 96.5 0.0076 1.9E-07 32.3 5.8 197 85-285 1440-1643(1710)
150 cd05804 StaR_like StaR_like; a 96.4 0.0045 1.1E-07 33.5 4.2 89 44-132 123-215 (355)
151 COG2912 Uncharacterized conser 96.4 0.012 3.1E-07 31.2 6.3 74 210-283 183-256 (269)
152 KOG3081 consensus 96.4 0.028 7.2E-07 29.2 8.0 172 68-279 107-279 (299)
153 PRK09782 bacteriophage N4 rece 96.2 0.0098 2.5E-07 31.7 5.1 52 44-95 53-104 (987)
154 COG4976 Predicted methyltransf 96.2 0.0028 7.1E-08 34.7 2.3 63 44-106 4-66 (287)
155 KOG2471 consensus 96.2 0.0025 6.4E-08 34.9 2.1 53 243-295 620-674 (696)
156 PRK11906 transcriptional regul 96.2 0.0028 7.1E-08 34.6 2.3 55 224-278 354-408 (458)
157 pfam07719 TPR_2 Tetratricopept 96.2 0.00091 2.3E-08 37.3 -0.3 33 70-102 2-34 (34)
158 KOG2053 consensus 96.1 0.016 4E-07 30.6 5.5 81 35-116 43-123 (932)
159 KOG1310 consensus 96.0 0.012 2.9E-07 31.3 4.5 72 31-102 404-478 (758)
160 pfam03704 BTAD Bacterial trans 95.9 0.033 8.5E-07 28.8 6.5 48 47-94 74-121 (146)
161 pfam06552 TOM20_plant Plant sp 95.9 0.0037 9.5E-08 34.0 1.6 57 51-107 51-118 (186)
162 KOG4814 consensus 95.8 0.0056 1.4E-07 33.0 2.4 93 35-127 354-452 (872)
163 COG4105 ComL DNA uptake lipopr 95.8 0.0042 1.1E-07 33.7 1.7 184 68-294 33-222 (254)
164 COG4700 Uncharacterized protei 95.8 0.03 7.6E-07 29.1 6.0 159 47-276 68-231 (251)
165 KOG2471 consensus 95.8 0.032 8.2E-07 28.9 6.1 108 40-147 245-379 (696)
166 COG4976 Predicted methyltransf 95.8 0.004 1E-07 33.8 1.5 65 19-86 12-77 (287)
167 KOG1941 consensus 95.7 0.014 3.6E-07 30.8 4.0 58 214-271 212-275 (518)
168 KOG0546 consensus 95.7 0.033 8.5E-07 28.8 5.8 83 209-291 276-358 (372)
169 COG3118 Thioredoxin domain-con 95.6 0.017 4.4E-07 30.4 4.2 63 230-292 224-288 (304)
170 KOG3617 consensus 95.6 0.011 2.8E-07 31.5 2.9 25 244-268 1147-1171(1416)
171 PRK06330 transcript cleavage f 95.5 0.0089 2.3E-07 31.9 2.3 47 49-96 131-177 (906)
172 pfam06552 TOM20_plant Plant sp 95.3 0.0042 1.1E-07 33.7 0.1 88 51-138 7-115 (186)
173 KOG0530 consensus 95.3 0.015 3.8E-07 30.7 2.8 127 18-144 59-188 (318)
174 KOG2396 consensus 95.1 0.077 2E-06 26.8 6.2 90 20-109 89-180 (568)
175 KOG1550 consensus 95.0 0.0038 9.8E-08 33.9 -0.8 82 48-131 262-356 (552)
176 KOG2610 consensus 95.0 0.073 1.9E-06 27.0 5.6 95 44-138 112-210 (491)
177 KOG4507 consensus 94.8 0.014 3.7E-07 30.8 1.8 99 31-129 208-309 (886)
178 COG4700 Uncharacterized protei 94.6 0.019 4.9E-07 30.1 2.0 124 15-138 69-195 (251)
179 KOG1310 consensus 94.6 0.015 3.7E-07 30.8 1.3 82 215-296 381-465 (758)
180 pfam03704 BTAD Bacterial trans 94.6 0.075 1.9E-06 26.9 5.0 59 71-129 64-122 (146)
181 KOG3364 consensus 94.6 0.1 2.6E-06 26.2 5.6 46 242-287 71-116 (149)
182 KOG1550 consensus 94.5 0.017 4.4E-07 30.4 1.6 225 39-276 291-543 (552)
183 KOG2047 consensus 94.2 0.037 9.5E-07 28.6 2.7 26 72-97 251-276 (835)
184 PRK11906 transcriptional regul 93.9 0.02 5.2E-07 30.0 0.9 63 225-287 275-349 (458)
185 COG3914 Spy Predicted O-linked 93.9 0.18 4.5E-06 24.9 5.7 88 49-136 81-175 (620)
186 KOG0530 consensus 93.7 0.035 8.9E-07 28.7 1.7 101 46-146 54-156 (318)
187 COG2912 Uncharacterized conser 93.6 0.072 1.8E-06 27.0 3.2 55 242-296 181-235 (269)
188 COG3898 Uncharacterized membra 93.6 0.069 1.8E-06 27.1 3.1 249 31-288 116-374 (531)
189 KOG3783 consensus 93.6 0.043 1.1E-06 28.2 2.1 81 52-132 250-332 (546)
190 KOG3783 consensus 93.6 0.019 4.8E-07 30.1 0.2 251 21-276 253-525 (546)
191 COG3947 Response regulator con 93.3 0.3 7.7E-06 23.6 6.1 51 244-294 281-331 (361)
192 pfam09986 DUF2225 Uncharacteri 93.1 0.086 2.2E-06 26.6 3.0 65 223-287 140-211 (214)
193 pfam11207 DUF2989 Protein of u 92.5 0.5 1.3E-05 22.4 7.3 56 239-295 138-197 (203)
194 pfam02259 FAT FAT domain. The 92.1 0.57 1.4E-05 22.1 11.4 48 242-289 252-305 (351)
195 KOG1941 consensus 91.7 0.069 1.8E-06 27.1 1.0 62 70-131 123-190 (518)
196 COG2976 Uncharacterized protei 91.5 0.28 7.2E-06 23.8 4.0 64 212-276 130-193 (207)
197 KOG2396 consensus 91.4 0.12 3.1E-06 25.8 2.0 85 56-140 92-177 (568)
198 PRK13184 pknD serine/threonine 91.1 0.7 1.8E-05 21.6 5.7 53 51-104 535-587 (933)
199 KOG0890 consensus 90.8 0.26 6.6E-06 24.0 3.3 56 240-297 1668-1723(2382)
200 pfam10300 IML2 Putative mitoch 90.8 0.31 7.8E-06 23.6 3.6 86 206-291 248-338 (446)
201 COG3629 DnrI DNA-binding trans 89.6 0.99 2.5E-05 20.8 5.9 59 212-270 157-215 (280)
202 pfam10516 SHNi-TPR SHNi-TPR. S 89.3 0.39 9.9E-06 23.0 3.1 31 243-273 2-32 (38)
203 COG5191 Uncharacterized conser 88.9 0.12 3.1E-06 25.7 0.4 77 33-109 104-182 (435)
204 pfam09613 HrpB1_HrpK Bacterial 88.4 1.2 3.1E-05 20.3 6.3 70 50-119 25-94 (156)
205 COG5107 RNA14 Pre-mRNA 3'-end 88.3 0.3 7.6E-06 23.6 2.0 55 217-271 441-495 (660)
206 COG5191 Uncharacterized conser 87.8 0.094 2.4E-06 26.4 -0.8 85 58-142 96-181 (435)
207 COG4455 ImpE Protein of avirul 87.6 0.62 1.6E-05 21.9 3.2 63 42-104 8-70 (273)
208 PRK10153 DNA-binding transcrip 87.5 0.38 9.6E-06 23.1 2.1 67 208-275 412-478 (512)
209 pfam10255 Paf67 RNA polymerase 87.2 0.56 1.4E-05 22.1 2.9 59 74-132 127-193 (402)
210 pfam07720 TPR_3 Tetratricopept 86.4 1.1 2.7E-05 20.7 3.9 33 243-275 2-34 (34)
211 pfam04781 DUF627 Protein of un 85.3 0.4 1E-05 23.0 1.3 24 44-67 5-28 (112)
212 KOG0529 consensus 83.5 1.7 4.4E-05 19.5 3.9 38 258-295 352-389 (421)
213 KOG0546 consensus 82.5 0.1 2.7E-06 26.1 -2.6 56 242-297 275-330 (372)
214 KOG1586 consensus 82.3 2.5 6.3E-05 18.7 5.8 67 35-102 33-106 (288)
215 TIGR02561 HrpB1_HrpK type III 82.2 2.5 6.4E-05 18.6 6.2 56 64-119 45-103 (190)
216 COG0790 FOG: TPR repeat, SEL1 82.1 2.5 6.4E-05 18.6 10.9 69 43-115 49-121 (292)
217 pfam04212 MIT MIT (microtubule 81.8 2.6 6.6E-05 18.5 4.6 29 243-271 6-34 (69)
218 KOG0985 consensus 80.8 0.97 2.5E-05 20.9 1.8 28 241-268 1103-1130(1666)
219 pfam10579 Rapsyn_N Rapsyn N-te 80.7 2.7 6.8E-05 18.5 4.0 58 39-96 10-70 (80)
220 cd02679 MIT_spastin MIT: domai 80.4 2.4 6.2E-05 18.7 3.8 56 242-297 8-73 (79)
221 smart00745 MIT Microtubule Int 79.9 3 7.7E-05 18.2 4.5 28 244-271 10-37 (77)
222 pfam07079 DUF1347 Protein of u 79.1 3.2 8.2E-05 18.0 4.3 75 215-291 469-545 (550)
223 KOG2581 consensus 78.0 2.7 6.8E-05 18.5 3.4 62 213-274 214-279 (493)
224 KOG4151 consensus 76.3 3.9 9.9E-05 17.6 4.5 60 46-105 104-163 (748)
225 KOG2709 consensus 75.3 3.4 8.7E-05 17.9 3.3 30 35-64 22-51 (560)
226 pfam12583 TPPII_N Tripeptidyl 71.1 5.3 0.00013 16.9 4.8 47 241-287 69-115 (134)
227 cd02682 MIT_AAA_Arch MIT: doma 69.8 5.7 0.00014 16.7 6.8 35 245-279 9-50 (75)
228 cd02656 MIT MIT: domain contai 69.2 5.8 0.00015 16.6 4.5 25 39-63 10-34 (75)
229 PRK04841 transcriptional regul 68.9 2.4 6E-05 18.7 1.3 58 215-272 698-761 (903)
230 cd02683 MIT_1 MIT: domain cont 66.9 6.5 0.00017 16.4 4.4 28 36-63 7-34 (77)
231 COG4941 Predicted RNA polymera 65.2 7.1 0.00018 16.2 5.4 44 242-285 365-408 (415)
232 smart00671 SEL1 Sel1-like repe 61.9 8.2 0.00021 15.8 3.9 30 243-272 2-35 (36)
233 cd02678 MIT_VPS4 MIT: domain c 59.3 9.1 0.00023 15.6 4.4 26 38-63 9-34 (75)
234 KOG2997 consensus 59.1 9.2 0.00023 15.5 4.9 39 35-73 19-57 (366)
235 pfam08631 SPO22 Meiosis protei 58.7 9.4 0.00024 15.5 7.0 27 244-270 250-276 (280)
236 pfam04910 DUF654 Protein of un 56.8 10 0.00026 15.3 4.3 43 56-98 27-69 (343)
237 KOG1585 consensus 55.7 11 0.00027 15.2 6.6 67 34-100 29-102 (308)
238 pfam10602 RPN7 26S proteasome 54.9 11 0.00028 15.1 7.1 28 70-97 37-64 (174)
239 KOG4459 consensus 54.5 11 0.00028 15.1 2.8 49 242-290 290-338 (471)
240 KOG0889 consensus 54.2 11 0.00029 15.1 5.1 48 241-288 2811-2858(3550)
241 pfam09797 NatB_MDM20 N-acetylt 51.7 12 0.00031 14.9 4.5 44 224-267 195-238 (365)
242 KOG1914 consensus 51.5 12 0.00032 14.8 4.8 69 29-97 13-81 (656)
243 pfam07721 TPR_4 Tetratricopept 51.3 13 0.00032 14.8 2.4 23 244-266 3-25 (26)
244 KOG1464 consensus 51.2 13 0.00032 14.8 2.5 47 50-96 42-92 (440)
245 pfam05843 Suf Suppressor of fo 49.4 13 0.00034 14.7 3.8 85 19-103 18-104 (275)
246 smart00386 HAT HAT (Half-A-TPR 49.3 14 0.00035 14.6 3.6 29 256-284 1-29 (33)
247 KOG1839 consensus 49.0 14 0.00035 14.6 2.4 58 238-295 1053-1118(1236)
248 cd02681 MIT_calpain7_1 MIT: do 48.3 14 0.00036 14.6 3.5 30 242-271 6-35 (76)
249 cd02684 MIT_2 MIT: domain cont 46.9 15 0.00038 14.4 4.4 24 40-63 11-34 (75)
250 cd02680 MIT_calpain7_2 MIT: do 45.1 16 0.0004 14.3 3.9 19 253-271 17-35 (75)
251 COG4649 Uncharacterized protei 44.1 16 0.00042 14.2 6.2 52 237-289 162-213 (221)
252 TIGR03504 FimV_Cterm FimV C-te 43.7 17 0.00043 14.1 3.8 29 246-274 3-31 (44)
253 KOG2063 consensus 43.1 17 0.00043 14.1 5.4 26 72-97 507-532 (877)
254 pfam11846 DUF3366 Domain of un 42.8 17 0.00044 14.1 5.1 43 233-276 136-178 (193)
255 pfam01239 PPTA Protein prenylt 40.4 19 0.00048 13.9 3.0 25 263-287 4-28 (31)
256 TIGR00985 3a0801s04tom mitocho 40.3 19 0.00048 13.9 3.4 32 246-277 97-130 (155)
257 TIGR02541 flagell_FlgJ flagell 39.3 15 0.00037 14.5 1.2 25 256-280 273-297 (332)
258 pfam08424 DUF1740 Protein of u 36.4 22 0.00056 13.5 5.3 37 242-278 157-193 (231)
259 COG2015 Alkyl sulfatase and re 34.0 24 0.00061 13.3 6.1 48 245-292 455-502 (655)
260 pfam04053 Coatomer_WDAD Coatom 31.1 27 0.00069 13.0 6.4 54 239-292 336-397 (435)
261 COG2909 MalT ATP-dependent tra 30.4 28 0.00071 12.9 3.3 28 73-100 462-489 (894)
262 pfam09670 Cas_Cas02710 CRISPR- 30.1 28 0.00072 12.9 5.0 60 39-98 135-198 (379)
263 COG5536 BET4 Protein prenyltra 29.6 27 0.00068 13.0 1.3 91 52-142 49-149 (328)
264 KOG1258 consensus 29.3 29 0.00074 12.8 6.8 75 222-296 345-420 (577)
265 KOG2518 consensus 26.4 33 0.00084 12.5 2.7 32 39-70 100-131 (556)
266 TIGR00756 PPR pentatricopeptid 22.3 40 0.001 12.1 3.7 27 244-270 2-28 (35)
267 KOG3677 consensus 22.0 40 0.001 12.1 1.7 21 247-267 277-297 (525)
No 1
>KOG4626 consensus
Probab=100.00 E-value=1.8e-37 Score=220.24 Aligned_cols=279 Identities=20% Similarity=0.311 Sum_probs=259.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 59799998999999972319999999999998-19989999999999981689989999999999972985222211111
Q gi|254780436|r 16 LRSSKRRGYYSLLSVLVVSVILLIEGCSSLFP-SMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQS 94 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 94 (298)
.+-.++...|..+....+...+.|...+.++. +|+...||..|.+|++++|+.+.+|.|+|.+|..++.|++|+.+|.+
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEHHCCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 36133689999998629750453120004776043699999999876537976527786588999987220378999999
Q ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111111211000000011222211111122221111111222222222221111111111121111222222222
Q gi|254780436|r 95 ALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGR 174 (298)
Q Consensus 95 al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (298)
++.+.|....++.+++.++...|..+.|+..+.+++...|....++.+++..... .+...++...+.+++...+....
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd--~G~V~ea~~cYnkaL~l~p~had 355 (966)
T KOG4626 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD--KGSVTEAVDCYNKALRLCPNHAD 355 (966)
T ss_pred HHHCCCCCHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 9742973031204347997314427888999999870399956777579999775--05467999999999875876377
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 22222221111111112221211111111222122222222222111111112221112232333888999999999998
Q gi|254780436|r 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEM 254 (298)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~ 254 (298)
....++..+...+..+.+...+..+....+.. ......++.++..+++.++|+.+++.++.+.|..++++.|+|.+|..
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~-aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEF-AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHH
T ss_conf 88879899988612218899999998638024-55642299999960547789999998871494078998750427788
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 4998999999999986179998999999999999742888743
Q gi|254780436|r 255 QGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVN 297 (298)
Q Consensus 255 ~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~n 297 (298)
+|+...|+.+|.+||.++|.+.+|+.|||.++++-|++..++.
T Consensus 435 ~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626 435 MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 6417889999999886390788987547888603688188999
No 2
>KOG4626 consensus
Probab=99.97 E-value=7.2e-34 Score=200.68 Aligned_cols=274 Identities=18% Similarity=0.236 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99998999999972319999999999998-19989999999999981689989999999999972985222211111111
Q gi|254780436|r 19 SKRRGYYSLLSVLVVSVILLIEGCSSLFP-SMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALD 97 (298)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 97 (298)
+.+.+.+..+..+.+........++.+.+ .|..++|-.+|.+||+.+|..+-+|.++|-++...|+...||..|+++++
T Consensus 167 ~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk 246 (966)
T KOG4626 167 ELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK 246 (966)
T ss_pred CCCHHHHHHHHHCCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEEEEHHCCHHHHHCCHHHHHHHHHHHHHC
T ss_conf 61379999888509504554224467887633613368999999862975045312000477604369999999987653
Q ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111211000000011222211111122221111111222222222221111111111121111222222222222
Q gi|254780436|r 98 LNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWY 177 (298)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (298)
++|....++.++|..+...+.++.|+..+.+++...|+...++.+++..+.. .+..+.++..+..++...|.....+.
T Consensus 247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye--qG~ldlAI~~Ykral~~~P~F~~Ay~ 324 (966)
T KOG4626 247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE--QGLLDLAIDTYKRALELQPNFPDAYN 324 (966)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHCCCEEEEEEC--CCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 7976527786588999987220378999999974297303120434799731--44278889999998703999567775
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 22221111111112221211111111222122222222222111111112221112232333888999999999998499
Q gi|254780436|r 178 GRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGS 257 (298)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 257 (298)
.++......+...++...+.+++...+. ..+....++.++..++..+.|...|.++++..|..+.++.|||.+|.++|+
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626 325 NLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCC
T ss_conf 7999977505467999999999875876-377888798999886122188999999986380245564229999996054
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999861799989999999999997428887
Q gi|254780436|r 258 YANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNE 295 (298)
Q Consensus 258 ~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~ 295 (298)
+++|+.+|+.||.|+|++.+|+.|+|.++..+|+...+
T Consensus 404 l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626 404 LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 77899999988714940789987504277886417889
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein; InterPro: IPR014266 This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system , analogous to the LPXTG/sortase system common in Gram-positive bacteria. The proteins in this entry occur in a species if, and only if, a transmembrane histidine kinase (IPR014265 from INTERPRO) and a DNA-binding response regulator (IPR014264 from INTERPRO) also occur. The present of tetratricopeptide repeats (TPR) suggests they may be involved in protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator..
Probab=99.93 E-value=2.1e-26 Score=160.11 Aligned_cols=250 Identities=20% Similarity=0.214 Sum_probs=132.7
Q ss_pred HHHHCCC---HHHHHHHH--------HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 9998199---89999999--------999981689989999999999972985222211111111111111112110000
Q gi|254780436|r 44 SLFPSMG---RRVNIDSL--------TAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALI 112 (298)
Q Consensus 44 ~~~~~~~---~~~Ai~~~--------~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (298)
.-|+.++ |+.|++.+ +.+++.+|++..+.+.-|.+.+.+|+++.|..++++.+...|++..+...++.+
T Consensus 279 v~~q~~~naG~~~A~~~~aqvlDhls~~~l~~~p~~~~a~~lAG~~~y~lg~~~~A~~yl~~~l~~~P~~~~A~rllA~i 358 (924)
T TIGR02917 279 VDFQKKNNAGYEDARETLAQVLDHLSQAALKSAPEYLPALLLAGASEYQLGNLEQAEQYLNQILKAAPNSHQARRLLAAI 358 (924)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99983357744899999999999999999961877425999999999996138999999999998668866899999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00011222211111122221111111222222222221111111111121111222222222222222211111111122
Q gi|254780436|r 113 RYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKS 192 (298)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (298)
....|+...+..........++.++......+..+. ..++...+..++.+.....|.+.......+......++...+
T Consensus 359 ~L~~g~~~~A~~~l~~~~~~~~~d~~~l~~lG~~~L--~~g~~~~A~~yl~ka~~~~P~~a~~~t~lG~~~L~~Gd~~~A 436 (924)
T TIGR02917 359 QLREGRVDEAIATLSPALGLDSDDSALLSLLGEAYL--AKGDFEKAAEYLAKASELDPENAAARTKLGISKLSQGDPSEA 436 (924)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 986289789999999886158877689999999998--638967899999876105898088999999886206883478
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 21211111111222122222222222111111112221112232333888999999999998499899999999998617
Q gi|254780436|r 193 IEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 (298)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~ 272 (298)
+..+..+...++.. ......+...+.+.+++++|+.......+..|++|..|+.+|.+|...|+..+|.+.|++|++|+
T Consensus 437 i~dL~~A~~l~~~~-~~a~~~L~~~yL~~~~~dKAla~~~~l~~~~pd~p~~~nl~G~i~l~~~~~~kA~~~f~~AL~i~ 515 (924)
T TIGR02917 437 IADLETAAQLDPEL-GRADLLLILSYLRSGEFDKALAAAKKLEKKQPDNPSLHNLLGAIYLGKKDLAKAREAFEKALKIE 515 (924)
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 99999999727775-34789999988742048999999999975288982689999999985178789999999875318
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999899999999999974288874
Q gi|254780436|r 273 SRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 273 P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
|++..|..+|+++-..-|+...+.
T Consensus 516 p~~~~A~~nLA~~d~~~~~~~~A~ 539 (924)
T TIGR02917 516 PDFFPAAANLARIDLQEGNPDDAK 539 (924)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 778478999999887428968999
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein; InterPro: IPR014266 This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system , analogous to the LPXTG/sortase system common in Gram-positive bacteria. The proteins in this entry occur in a species if, and only if, a transmembrane histidine kinase (IPR014265 from INTERPRO) and a DNA-binding response regulator (IPR014264 from INTERPRO) also occur. The present of tetratricopeptide repeats (TPR) suggests they may be involved in protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator..
Probab=99.92 E-value=2.6e-25 Score=154.21 Aligned_cols=276 Identities=19% Similarity=0.196 Sum_probs=197.6
Q ss_pred HHHHHHHH--------HHHHHHHHHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 79999899--------9999972319999-99999999819989999999999981689989999999999972985222
Q gi|254780436|r 18 SSKRRGYY--------SLLSVLVVSVILL-IEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKA 88 (298)
Q Consensus 18 ~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 88 (298)
...+.+.. ..+....++.... ...+...|+.++++.|-.+++++++..|+++.+...++.+..+.|++.+|
T Consensus 289 ~~~A~~~~aqvlDhls~~~l~~~p~~~~a~~lAG~~~y~lg~~~~A~~yl~~~l~~~P~~~~A~rllA~i~L~~g~~~~A 368 (924)
T TIGR02917 289 YEDARETLAQVLDHLSQAALKSAPEYLPALLLAGASEYQLGNLEQAEQYLNQILKAAPNSHQARRLLAAIQLREGRVDEA 368 (924)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 48999999999999999999618774259999999999961389999999999986688668999999999862897899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21111111111111111211000000011222211111122221111111222222222221111111111121111222
Q gi|254780436|r 89 LLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQL 168 (298)
Q Consensus 89 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (298)
+.....++..++.++......|..+...|+++++..++.++....|.+.......+.... ..++...++..+..+...
T Consensus 369 ~~~l~~~~~~~~~d~~~l~~lG~~~L~~g~~~~A~~yl~ka~~~~P~~a~~~t~lG~~~L--~~Gd~~~Ai~dL~~A~~l 446 (924)
T TIGR02917 369 IATLSPALGLDSDDSALLSLLGEAYLAKGDFEKAAEYLAKASELDPENAAARTKLGISKL--SQGDPSEAIADLETAAQL 446 (924)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHH
T ss_conf 999998861588776899999999986389678999998761058980889999998862--068834789999999972
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 22222222222221111111112221211111111222122222222222111111112221112232333888999999
Q gi|254780436|r 169 KTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNG 248 (298)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~l 248 (298)
.+........+...+.+.++..++...........|. .+..+..+|.++...++..+|...|+++++++|++..+..+|
T Consensus 447 ~~~~~~a~~~L~~~yL~~~~~dKAla~~~~l~~~~pd-~p~~~nl~G~i~l~~~~~~kA~~~f~~AL~i~p~~~~A~~nL 525 (924)
T TIGR02917 447 DPELGRADLLLILSYLRSGEFDKALAAAKKLEKKQPD-NPSLHNLLGAIYLGKKDLAKAREAFEKALKIEPDFFPAAANL 525 (924)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 7775347899999887420489999999999752889-826899999999851787899999998753187784789999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998499899999999998617999899999999999974288874
Q gi|254780436|r 249 GMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 249 g~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
+.+-.+.|+.+.|++-|+++|.++|+|..+...|+.+...-|+.-+.+
T Consensus 526 A~~d~~~~~~~~A~~r~~~~l~~~P~~~~a~~~La~L~~~~g~~~~~~ 573 (924)
T TIGR02917 526 ARIDLQEGNPDDAKQRFEKVLTIDPKNLRALLALAELAARTGNEEEAV 573 (924)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 998874289689999999998757433799999999998518968999
No 5
>KOG1126 consensus
Probab=99.88 E-value=3.2e-23 Score=142.89 Aligned_cols=252 Identities=19% Similarity=0.192 Sum_probs=171.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-----------------------
Q ss_conf 999998199899999999999816899899999999999729852222111111111-----------------------
Q gi|254780436|r 42 CSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDL----------------------- 98 (298)
Q Consensus 42 ~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------------- 98 (298)
+-....+-+.++|+..|.+.-...++-...+.++|.+|+.+++|++|...|+.+-++
T Consensus 326 ~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~ 405 (638)
T KOG1126 326 GYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA 405 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99998888799999999864775378447999988999989878999999999986145411324678888888775677
Q ss_pred -----------CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----------111111121100000001122221111112222111111122222222222111111111112111122
Q gi|254780436|r 99 -----------NPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQ 167 (298)
Q Consensus 99 -----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (298)
+|..+..|...|.++..+++.+.|+..+.+++.++|....++...+.-. ......+.+...+..++.
T Consensus 406 Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~--~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126 406 LSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHES--IATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHH--HHHHHHHHHHHHHHHHHC
T ss_conf 889989887508787077877402566656799999988776546876321235307734--545777767787776515
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 22222222222222111111111222121111111122212222222222211111111222111223233388899999
Q gi|254780436|r 168 LKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFN 247 (298)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~ 247 (298)
..+....+++.+|..+.++.+.+.+...+.++....|.+. ......|..+...++.++|+..+++|+..+|.++-..+.
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns-vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS-VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred CCCHHHHHHHHHHHHEECCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 7805667888620302204104678998876422796103-577652599998601327999999988168788156788
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998499899999999998617999899999999999974288874
Q gi|254780436|r 248 GGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 248 lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
+|.+++.++++++|+..+++.-++-|+..-++..+|++++.+|+...++
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 7788876223699999999999857505789999999999973305888
No 6
>KOG0547 consensus
Probab=99.88 E-value=9e-24 Score=145.87 Aligned_cols=261 Identities=23% Similarity=0.316 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 99999999999981998999999999998168998999999999997298522221111111111111111211000000
Q gi|254780436|r 35 VILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 (298)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (298)
...+-..+...|++++|++||++|++||++.|+.+..|.||+.||..+|++++-+++..++++++|+...++..++....
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99987530455302538889999999985089976133108999999850999999878776249088999999878877
Q ss_pred CCCCCCCCCCCCCCCCCCC--------------------------------CCCCCCCC---CCCCCCCC-----CCCCC
Q ss_conf 0112222111111222211--------------------------------11111222---22222222-----11111
Q gi|254780436|r 115 KMGDVPMAIRDYGTALKIN--------------------------------PDYDVAYI---GRGNIYRD-----ERYSD 154 (298)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~--------------------------------~~~~~~~~---~~~~~~~~-----~~~~~ 154 (298)
.+++..++........... |..+.... ..+..... .....
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 53238889886569998530123125899999999999999998622368988870779999985323564210268776
Q ss_pred -----CCCCCCCCCCC---------------C-------CCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----11111121111---------------2-------222------22222222222211111111122212111111
Q gi|254780436|r 155 -----LQKAFADFDRA---------------I-------QLK------TSDGRAWYGRALVYQMRGEYEKSIEDFSQAIS 201 (298)
Q Consensus 155 -----~~~~~~~~~~~---------------~-------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (298)
...+...+... . ..+ ..........+......+....+...+...+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 21055888999998407253788889998886533431112232126789999998761022314881011666999984
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 11222122222222222111111112221112232333888999999999998499899999999998617999899999
Q gi|254780436|r 202 LYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNG 281 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~ 281 (298)
..+.. ...+..++..+....+..+....|.++..++|.++.+|+.+|.+++-++++++|+.+|+||+.|+|++.-++..
T Consensus 355 l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547 355 LDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred CCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 57655-23899999998601130889999899874498898325767789999998999998799876058253379999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999974288874
Q gi|254780436|r 282 ILRISQDLSSTVNEV 296 (298)
Q Consensus 282 la~i~~~lg~~~~~~ 296 (298)
++.++.+++.+.+.+
T Consensus 434 l~~a~Yr~~k~~~~m 448 (606)
T KOG0547 434 LCCALYRQHKIAESM 448 (606)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999987899999
No 7
>KOG1125 consensus
Probab=99.87 E-value=1.7e-23 Score=144.41 Aligned_cols=232 Identities=18% Similarity=0.246 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 99999999999819989999999999981689989999999999972985222211111111111111112110000000
Q gi|254780436|r 36 ILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYK 115 (298)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (298)
.-.+..+-.+++.|...+|+-.|+.+++.+|.++++|..||.+....++-..||..++++++++|++..+...++..+..
T Consensus 286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytN 365 (579)
T KOG1125 286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTN 365 (579)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 87489999998638905999999999861928789999961576503420889999999984699519999998888861
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11222211111122221111111222222222221111111111121111222222222222222211111111122212
Q gi|254780436|r 116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED 195 (298)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (298)
.+....|...+...+...|............. .... ...... .....-...
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~-------~~~~---------~s~~~~-------------~~l~~i~~~ 416 (579)
T KOG1125 366 EGLQNQALKMLDKWIRNKPKYVHLVSAGENED-------FENT---------KSFLDS-------------SHLAHIQEL 416 (579)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCC-------CCCC---------CCCCCH-------------HHHHHHHHH
T ss_conf 46688899999999984862111146676656-------6677---------677887-------------899999999
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 111111112-2212222222222211111111222111223233388899999999999849989999999999861799
Q gi|254780436|r 196 FSQAISLYS-SISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR 274 (298)
Q Consensus 196 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~ 274 (298)
+..+....+ ..++++...+|..+...++++.++.+|+.|+...|++...|+.||.++..-.+.++||..|++|++|.|+
T Consensus 417 fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125 417 FLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999857788884277626789740147888999999997049841778988668860775539999999999841887
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9899999999999974288874
Q gi|254780436|r 275 YYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 275 ~~~a~~~la~i~~~lg~~~~~~ 296 (298)
|..+++|||..+..+|...+++
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125 497 YVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred EEEEEHHHHHHHHHHHHHHHHH
T ss_conf 2653010145662056699999
No 8
>KOG0547 consensus
Probab=99.87 E-value=1.6e-23 Score=144.53 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 597999989999999723199999-9999999819989999999999981689989999999999972985222211
Q gi|254780436|r 16 LRSSKRRGYYSLLSVLVVSVILLI-EGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLD 91 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~ 91 (298)
.+.+++..||..+..+.++..+.. +.+.++...++|++-++..+++++++|+++.+++.|+.++..+|++.+|+.+
T Consensus 129 kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547 129 KKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 53888999999998508997613310899999985099999987877624908899999987887753238889886
No 9
>KOG1126 consensus
Probab=99.86 E-value=1e-22 Score=140.15 Aligned_cols=261 Identities=19% Similarity=0.280 Sum_probs=219.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 5979999899999997231999999999999819989999999-999981689989999999999972985222211111
Q gi|254780436|r 16 LRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSL-TAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQS 94 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~~-~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 94 (298)
....+++.++..+-...+..+.-++-..+..-..+.+-++..+ +..+..+|+.|+.|.-+|.||..+++++.||++|++
T Consensus 367 ~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~R 446 (638)
T KOG1126 367 IEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKR 446 (638)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 87899999999998614541132467888888877567788998988750878707787740256665679999998877
Q ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111111211000000011222211111122221111111222222222221111111111121111222222222
Q gi|254780436|r 95 ALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGR 174 (298)
Q Consensus 95 al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (298)
|++++|....++..+|.-......++.|...|..++..+|....+++.++..+.. ....+.+...++++...+|.+..
T Consensus 447 AiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K--qek~e~Ae~~fqkA~~INP~nsv 524 (638)
T KOG1126 447 AIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK--QEKLEFAEFHFQKAVEINPSNSV 524 (638)
T ss_pred HHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHEEC--CCHHHHHHHHHHHHHCCCCCCHH
T ss_conf 6546876321235307734545777767787776515780566788862030220--41046789988764227961035
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 22222221111111112221211111111222122222222222111111112221112232333888999999999998
Q gi|254780436|r 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEM 254 (298)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~ 254 (298)
.....+..+...+..+++...+.++...++.+. -..+..+.++...+++.+|+..+++..+.-|+++.+++.+|.+|..
T Consensus 525 i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~-l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~ 603 (638)
T KOG1126 525 ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP-LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR 603 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 776525999986013279999999881687881-5678877888762236999999999998575057899999999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 4998999999999986179998999
Q gi|254780436|r 255 QGSYANAVKYYKKALSVDSRYYRAK 279 (298)
Q Consensus 255 ~g~~~~A~~~~~kAl~l~P~~~~a~ 279 (298)
+|+.+.|+..|.-|.++||.=..+.
T Consensus 604 ~~~~~~Al~~f~~A~~ldpkg~~i~ 628 (638)
T KOG1126 604 LGNTDLALLHFSWALDLDPKGAQIQ 628 (638)
T ss_pred HCCCHHHHHHHHHHHCCCCCCCHHH
T ss_conf 7330588876677860798500106
No 10
>KOG2076 consensus
Probab=99.83 E-value=3.4e-21 Score=131.86 Aligned_cols=93 Identities=20% Similarity=0.299 Sum_probs=79.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 222122222222222111111112221112232333-8889999999999984998999999999986179998999999
Q gi|254780436|r 204 SSISPDYYNGRGISYLATKNYDSALEDFKFAINLDP-KKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGI 282 (298)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~l 282 (298)
+......+..++..+...+.+.+|+..+.......+ ++...|+.+|.||..+|.+++|+++|+++|.++|++.+++..|
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~L 489 (895)
T KOG2076 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITL 489 (895)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 45557899999999983655888999999986483335513469899999987428999999999995289860166319
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999974288874
Q gi|254780436|r 283 LRISQDLSSTVNEV 296 (298)
Q Consensus 283 a~i~~~lg~~~~~~ 296 (298)
+.+++.+|+...++
T Consensus 490 asl~~~~g~~Ekal 503 (895)
T KOG2076 490 ASLYQQLGNHEKAL 503 (895)
T ss_pred HHHHHHCCCHHHHH
T ss_conf 99997638888999
No 11
>KOG1173 consensus
Probab=99.82 E-value=2.4e-21 Score=132.76 Aligned_cols=247 Identities=21% Similarity=0.254 Sum_probs=190.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 99999998199899999999999816899899999999999729852222111111111111111121100000001122
Q gi|254780436|r 40 EGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDV 119 (298)
Q Consensus 40 ~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 119 (298)
-.+++++..++..+-...-.+.++..|+.+-.|+..|.-|...|++.+|..+|.|+..++|....+|...|..+...+..
T Consensus 283 ~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh 362 (611)
T KOG1173 283 LHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH 362 (611)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHH
T ss_conf 99999998165216999888798728887731465778999814867999998887603765327999876776501057
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22111111222211111112222222222211111111111211112222222222222222111111111222121111
Q gi|254780436|r 120 PMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQA 199 (298)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (298)
+.+...+..+.+.-+.........+.-+. .......+...+..+....|.++......+........+.++...+...
T Consensus 363 dQAmaaY~tAarl~~G~hlP~LYlgmey~--~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173 363 DQAMAAYFTAARLMPGCHLPSLYLGMEYM--RTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHEEEHHHHHHHHHHHHHHH
T ss_conf 88999999999866677631789999998--7423989999999987118986044331442033275468899999999
Q ss_pred CCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 1111222------1222222222221111111122211122323338889999999999984998999999999986179
Q gi|254780436|r 200 ISLYSSI------SPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDS 273 (298)
Q Consensus 200 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P 273 (298)
....... ......++|..+.+.+.+.+|+..+++++...|+++.++..+|.+|..+|+++.|+++|.|||-++|
T Consensus 441 l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173 441 LEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 88766305432211577876789999976679999999999871877656888899999996580779999999871487
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 998999999999999
Q gi|254780436|r 274 RYYRAKNGILRISQD 288 (298)
Q Consensus 274 ~~~~a~~~la~i~~~ 288 (298)
++.-+..-|+...++
T Consensus 521 ~n~~~~~lL~~aie~ 535 (611)
T KOG1173 521 DNIFISELLKLAIED 535 (611)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 528999999999975
No 12
>KOG1173 consensus
Probab=99.79 E-value=1.3e-19 Score=123.28 Aligned_cols=267 Identities=19% Similarity=0.203 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99972319999999999998199899999999999816899899999999999729852222111111111111111121
Q gi|254780436|r 28 LSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYA 107 (298)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (298)
+..+..+..++...+..++....+++-.+..+..++.+|-++..+-..=.++..+|+..+=...-.+.++..|..+..|+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~ 316 (611)
T KOG1173 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWF 316 (611)
T ss_pred HHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHH
T ss_conf 54330147999999999997171999999859987327898513999999999816521699988879872888773146
Q ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10000000112222111111222211111112222222222211111111111211112222222222222222111111
Q gi|254780436|r 108 NRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRG 187 (298)
Q Consensus 108 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (298)
..|..+...+...+|...+.++...++....+|...+..+... +..+++...+..+....+........++..+....
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e--~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173 317 AVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE--GEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 5778999814867999998887603765327999876776501--05788999999999866677631789999998742
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCHHHHHHHHHHHHHCCCHHH
Q ss_conf 1112221211111111222122222222222111111112221112232333-------888999999999998499899
Q gi|254780436|r 188 EYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDP-------KKASFWFNGGMVYEMQGSYAN 260 (298)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p-------~~~~~~~~lg~~~~~~g~~~~ 260 (298)
....+...+..+....|. ++-....+|.+.+..+.+.+|...|..++...+ .-...+.|+|.++.+++++++
T Consensus 395 n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173 395 NLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred CHHHHHHHHHHHHHCCCC-CCHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 398999999998711898-6044331442033275468899999999887663054322115778767899999766799
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999986179998999999999999742888743
Q gi|254780436|r 261 AVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVN 297 (298)
Q Consensus 261 A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~n 297 (298)
||.+|++||.+.|++..++..+|.++.-+||+..++.
T Consensus 474 AI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173 474 AIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 9999999987187765688889999999658077999
No 13
>KOG0624 consensus
Probab=99.78 E-value=6.8e-20 Score=124.83 Aligned_cols=250 Identities=20% Similarity=0.308 Sum_probs=176.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 99999999981998999999999998168998999999999997298522221111111111111111211000000011
Q gi|254780436|r 38 LIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117 (298)
Q Consensus 38 ~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 117 (298)
-++.+..++..+++..|+..|..|++.+|++..+++.+|.+|..+|+-.-|+.++.+++++.|+...+....|.++...|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHCHHHHHCC
T ss_conf 99988999973467789999888870780669999987777765257740033089998618318888887220355325
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC---CCCC----------CCC----------------------------------C
Q ss_conf 2222111111222211111112222---2222----------222----------------------------------1
Q gi|254780436|r 118 DVPMAIRDYGTALKINPDYDVAYIG---RGNI----------YRD----------------------------------E 150 (298)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~----------~~~----------------------------------~ 150 (298)
..+.|...+...+...|........ +..+ ... .
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 28889879999972598730268899887768999999999998843874655999998888537133689999988888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------------------
Q ss_conf 111111111121111222222222222222211111111122212111111112--------------------------
Q gi|254780436|r 151 RYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYS-------------------------- 204 (298)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 204 (298)
..+....++...........++....+.....++..++...+.......+..+|
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53868888888999874046653888989989976611887899999998069533367788999999999999899998
Q ss_pred --------------------C---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf --------------------2---21222222222221111111122211122323338889999999999984998999
Q gi|254780436|r 205 --------------------S---ISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANA 261 (298)
Q Consensus 205 --------------------~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 261 (298)
. ........+..++..-+++.+|+..+..++..+|+++.++..++.+|..-..|++|
T Consensus 281 e~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~A 360 (504)
T KOG0624 281 EEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDA 360 (504)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62249999998789871598656142120000000005667778999999999715903789999999987626778889
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 99999998617999899999999999
Q gi|254780436|r 262 VKYYKKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 262 ~~~~~kAl~l~P~~~~a~~~la~i~~ 287 (298)
|.+|++|.+.+|++..++.++.+..+
T Consensus 361 I~dye~A~e~n~sn~~~reGle~Akr 386 (504)
T KOG0624 361 IHDYEKALELNESNTRAREGLERAKR 386 (504)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99899987448420788988999999
No 14
>KOG1155 consensus
Probab=99.78 E-value=3e-19 Score=121.30 Aligned_cols=246 Identities=18% Similarity=0.168 Sum_probs=186.7
Q ss_pred CCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
Q ss_conf 19989999999999981-68998999999999997298522221111111111111111211000000011222211111
Q gi|254780436|r 48 SMGRRVNIDSLTAVIRA-HPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDY 126 (298)
Q Consensus 48 ~~~~~~Ai~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 126 (298)
..+-++++..+...+.. -|+....-...|.+.....||++|+..|+...+.+|-...........++...+..+-.-..
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88888999999988751687417799999998861220788999999998549773215878767799972117899999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12222111111122222222222111111111112111122222222222222221111111112221211111111222
Q gi|254780436|r 127 GTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSI 206 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (298)
.....++...++..-..+..+. .....+.++..+..++..+|.....+...|..+........++..+..++...|.
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYS--lr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~- 396 (559)
T KOG1155 320 QNVSNIDKYRPETCCIIANYYS--LRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR- 396 (559)
T ss_pred HHHHHHCCCCCCCEEEEHHHHH--HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCH-
T ss_conf 9998751477523244313788--8776899999999998328431378998607989835618899999988814925-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 12222222222211111111222111223233388899999999999849989999999999861799989999999999
Q gi|254780436|r 207 SPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRIS 286 (298)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~ 286 (298)
+...++.+|..+..++-..-|+-.+++|....|+++..|..+|.||.++++.++||++|++|+.....+..++..||.++
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 67888520689998135699999999987249996689999999999855689999999888852464338999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9974288874
Q gi|254780436|r 287 QDLSSTVNEV 296 (298)
Q Consensus 287 ~~lg~~~~~~ 296 (298)
+++++...+.
T Consensus 477 e~l~d~~eAa 486 (559)
T KOG1155 477 EELKDLNEAA 486 (559)
T ss_pred HHHHHHHHHH
T ss_conf 9987479999
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor; InterPro: IPR005687 The mitochondrial protein translocase (MPT) family, which brings nuclearly encoded preproteins into mitochondria, is very complex with 19 currently identified protein constituents. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom70 proteins. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane.
Probab=99.75 E-value=1.5e-19 Score=122.96 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 22111111111222121111111122212222222222211111111222111223233388899999999999849989
Q gi|254780436|r 180 ALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYA 259 (298)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 259 (298)
|......+....+...+.+.+.+.|... ..|...+.+....+..+++...|++|+..+++++.+||.+|++.+-.|+|+
T Consensus 370 G~F~~L~~~~~~A~~Dl~K~IEL~P~~~-qSYI~~A~~~~~~~~~~~~~~~F~~Al~~~~~~~~~YYHRaQl~FI~~~f~ 448 (649)
T TIGR00990 370 GIFKCLKGKHLEALADLSKSIELDPRVT-QSYIKRASINLELGDPDKAEEDFDKALKKNSEDPDIYYHRAQLHFIKGEFA 448 (649)
T ss_pred CHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHH
T ss_conf 2223312881578998776542278731-789999999741578422588999998618898751101778998873077
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999861799989999999999997428
Q gi|254780436|r 260 NAVKYYKKALSVDSRYYRAKNGILRISQDLSST 292 (298)
Q Consensus 260 ~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~ 292 (298)
+|-++|+|+++|||++.-.+..||.+..++|.+
T Consensus 449 ~A~KDy~K~~~LDp~~IF~~IQL~~~~Y~~~~~ 481 (649)
T TIGR00990 449 QAGKDYQKSIDLDPDFIFSYIQLGVLQYKLGSI 481 (649)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCH
T ss_conf 675457766432711022689999988630344
No 16
>KOG0550 consensus
Probab=99.75 E-value=6.2e-19 Score=119.63 Aligned_cols=261 Identities=21% Similarity=0.255 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 99999999999981998999999999998168998999999999997298522221111111111111111211000000
Q gi|254780436|r 35 VILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 (298)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (298)
.......+...+.+..|.+|+..|+.||+..|+++..|.+++.+++..|+|++|+-+.++.+++.|.........+.+..
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHEECCCCCCCCCCCHHHHHH
T ss_conf 99987425217778668889988899998584003654416889998776752421166530057874101245224455
Q ss_pred CCCCCCCCCCCCCCCC------------CCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0112222111111222------------2111111------122222222222111111111112111122222222222
Q gi|254780436|r 115 KMGDVPMAIRDYGTAL------------KINPDYD------VAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAW 176 (298)
Q Consensus 115 ~~~~~~~a~~~~~~~~------------~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (298)
..+....+...+.... ...+... ........+. ...++...+.......+..++.+....
T Consensus 129 a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl--~~~~~~~~a~~ea~~ilkld~~n~~al 206 (486)
T KOG0550 129 ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECL--AFLGDYDEAQSEAIDILKLDATNAEAL 206 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHCCCCHHHHH
T ss_conf 567889899886210166776531222002423467732567887410565--430343167788888875163016788
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----
Q ss_conf 22222111111111222121111111122212-----------222222222211111111222111223233388----
Q gi|254780436|r 177 YGRALVYQMRGEYEKSIEDFSQAISLYSSISP-----------DYYNGRGISYLATKNYDSALEDFKFAINLDPKK---- 241 (298)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~---- 241 (298)
...+.+.........+...+.+.+...|.... ......|...+..|.+..|.+.+..++.++|.+
T Consensus 207 ~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550 207 YVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred HHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 86153310232068888887652026802566776764078999887505667634424678998877633793222246
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999999984998999999999986179998999999999999742888743
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVN 297 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~n 297 (298)
+..|.|+|.+...+|+..+|+.+.+.|++|||.+..|+...|+++..|+....+|-
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89998767664206771656654466663479888999998898889989999999
No 17
>KOG2002 consensus
Probab=99.75 E-value=3e-19 Score=121.34 Aligned_cols=239 Identities=17% Similarity=0.199 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999981689989999999999972985222211111111111111-112110000000112222111111222
Q gi|254780436|r 52 RVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYY-KVYANRALIRYKMGDVPMAIRDYGTAL 130 (298)
Q Consensus 52 ~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~ 130 (298)
+.|...|..+++.+|+++-++..+|.+.+..|+|..|+.+|.+++.++|... ......|.++..++..+.|...+..++
T Consensus 147 ~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ral 226 (1018)
T KOG2002 147 DDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERAL 226 (1018)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 77999999999608853588998999996121389999999999850866678763114667875034366799999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC
Q ss_conf 211111112222222222211-11111111121111222222222222222211111111122212111111112--221
Q gi|254780436|r 131 KINPDYDVAYIGRGNIYRDER-YSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYS--SIS 207 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 207 (298)
.++|....+...++....... ......+......+...++.++.....+...++..+++.........++.... ...
T Consensus 227 qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~ 306 (1018)
T KOG2002 227 QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIK 306 (1018)
T ss_pred HCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 50715599999999999870156778889999888876068995799999777741353789999999999861014777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 2222222222211111111222111223233388-899999999999849989999999999861799989999999999
Q gi|254780436|r 208 PDYYNGRGISYLATKNYDSALEDFKFAINLDPKK-ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRIS 286 (298)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~ 286 (298)
...++.+|.++..+|+++.|..+|..++..+|++ .-.++.+|++|...|+++.|+.+|++.++..|++.++..-||.++
T Consensus 307 aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002 307 AESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 78899999998862268999999999972488876200121257898713277889999999986765088999988678
Q ss_pred HHHH
Q ss_conf 9974
Q gi|254780436|r 287 QDLS 290 (298)
Q Consensus 287 ~~lg 290 (298)
...+
T Consensus 387 a~~~ 390 (1018)
T KOG2002 387 AHSA 390 (1018)
T ss_pred HHHH
T ss_conf 8640
No 18
>KOG0548 consensus
Probab=99.74 E-value=3e-19 Score=121.30 Aligned_cols=281 Identities=18% Similarity=0.230 Sum_probs=166.8
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 32597999989999999723199999-99999998199899999999999816899899999999999729852222111
Q gi|254780436|r 14 GFLRSSKRRGYYSLLSVLVVSVILLI-EGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDF 92 (298)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 92 (298)
.-...+.+...+..+..+.+..-++. +...++...+.|++|+++-++.++++|..+.+|..+|.++.-+|+|++|+..|
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 46667899999988870699752010106788887756999998898877608842367787578987205389999999
Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCC---------------------CCCCCCC---CCCCCCCCCCCCCCC-----
Q ss_conf 11111111111112110000000112222---------------------1111112---222111111122222-----
Q gi|254780436|r 93 QSALDLNPRYYKVYANRALIRYKMGDVPM---------------------AIRDYGT---ALKINPDYDVAYIGR----- 143 (298)
Q Consensus 93 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~---------------------a~~~~~~---~~~~~~~~~~~~~~~----- 143 (298)
.+.++.+|++......+............ ....+.. .+..+|.....+...
T Consensus 94 ~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548 94 SEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHCCCHHHHCCCCCHHHHH
T ss_conf 87753298459999748886567787531201829998761275555564157899999986038276502025279999
Q ss_pred --C--------------CCCC---------------------------------------CCCCCCCCCCCCCCCCCCCC
Q ss_conf --2--------------2222---------------------------------------21111111111121111222
Q gi|254780436|r 144 --G--------------NIYR---------------------------------------DERYSDLQKAFADFDRAIQL 168 (298)
Q Consensus 144 --~--------------~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~ 168 (298)
+ .... .....++..+...+...+..
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99887267400001134445789999665567877762046899999886457899889988745489999999999867
Q ss_pred CCCCCCCCC-----------------------------------------CCCCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf 222222222-----------------------------------------2222111111111222121111111-----
Q gi|254780436|r 169 KTSDGRAWY-----------------------------------------GRALVYQMRGEYEKSIEDFSQAISL----- 202 (298)
Q Consensus 169 ~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~----- 202 (298)
. ....... ..+..+........+...+.+.+..
T Consensus 254 ~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~ 332 (539)
T KOG0548 254 A-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPD 332 (539)
T ss_pred H-HHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 5-666788889889973137987442208899875789999999999999863113557767889999999866325888
Q ss_pred ---------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf ---------------------12221222222222221111111122211122323338889999999999984998999
Q gi|254780436|r 203 ---------------------YSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANA 261 (298)
Q Consensus 203 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 261 (298)
.+. ........|..++..+++..|+..+.+++..+|+++..|.|+|.||.++|.+..|
T Consensus 333 ~ls~lk~~Ek~~k~~e~~a~~~pe-~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~a 411 (539)
T KOG0548 333 LLSKLKEAEKALKEAERKAYINPE-KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEA 411 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 787778999999998888731846-7899998778877535889999999999842984157888899999987317989
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998617999899999999999974288874
Q gi|254780436|r 262 VKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 262 ~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
+.+.+++++++|++..++..-|.++..+-+..+++
T Consensus 412 L~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl 446 (539)
T KOG0548 412 LKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL 446 (539)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98899987509318999999999999999899999
No 19
>KOG2002 consensus
Probab=99.72 E-value=6.5e-19 Score=119.52 Aligned_cols=258 Identities=17% Similarity=0.184 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99972319999999999998199899999999999816899-89999999999972985222211111111111111112
Q gi|254780436|r 28 LSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSD-PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVY 106 (298)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (298)
+...+.+++.++..+...|..++|..|+..|..++.++|.. +.....+|.|+.++|+.+.|+..|+++++++|++..+.
T Consensus 157 l~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~al 236 (1018)
T KOG2002 157 LKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSAL 236 (1018)
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 96088535889989999961213899999999998508666787631146678750343667999999985071559999
Q ss_pred CCCCHHHCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCC
Q ss_conf 110000000112---2221111112222111111122222222222111111111112111122---2222222222222
Q gi|254780436|r 107 ANRALIRYKMGD---VPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQ---LKTSDGRAWYGRA 180 (298)
Q Consensus 107 ~~~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 180 (298)
..++.+.....+ +..+...+..+...++.++.+...+...+.... +............. ..+......+..+
T Consensus 237 v~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~--dy~~v~~la~~ai~~t~~~~~~aes~Y~~g 314 (1018)
T KOG2002 237 VALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK--DYERVWHLAEHAIKNTENKSIKAESFYQLG 314 (1018)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987015677888999988887606899579999977774135--378999999999986101477778899999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC----
Q ss_conf 2111111111222121111111122212222222222211111111222111223233388899999999999849----
Q gi|254780436|r 181 LVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQG---- 256 (298)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g---- 256 (298)
..+...+++..+...+..+....+.+..-.+..+|..+...++...+..+|.+.++..|++.+...-+|.+|...+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99886226899999999997248887620012125789871327788999999998676508899998867886401257
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9899999999998617999899999999999
Q gi|254780436|r 257 SYANAVKYYKKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 257 ~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~ 287 (298)
..++|.....++++..|.+.+|+..++.++.
T Consensus 395 ~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002 395 KRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 7899999998877505340888999999998
No 20
>KOG1155 consensus
Probab=99.71 E-value=6.1e-18 Score=114.23 Aligned_cols=258 Identities=17% Similarity=0.220 Sum_probs=150.5
Q ss_pred HHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 231999999-9999998199899999999999816899899999999999729852222111111111111111121100
Q gi|254780436|r 32 VVSVILLIE-GCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRA 110 (298)
Q Consensus 32 ~~~~~~~~~-~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 110 (298)
.+....+.. .+...+.+.++++|+..|+.+.+.+|-..+-+.....+++-..+-.+---.-+.+..++.-.+......|
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIa 337 (559)
T KOG1155 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIA 337 (559)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEH
T ss_conf 87417799999998861220788999999998549773215878767799972117899999999875147752324431
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000112222111111222211111112222222222211111111111211112222222222222222111111111
Q gi|254780436|r 111 LIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYE 190 (298)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (298)
..+...++.+.|+..|+++++++|....++..+|.-+... .+...++..+..++..+|.+..+++.+|..+.......
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm--KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155 338 NYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM--KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH
T ss_conf 3788877689999999999832843137899860798983--56188999999888149256788852068999813569
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 22212111111112221222222222221111111122211122323338889999999999984998999999999986
Q gi|254780436|r 191 KSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270 (298)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~ 270 (298)
.+...+.++....|. +...+..+|.++...++.++|+.+|..++.....+..++..+|.+|.++++.++|..+|++.++
T Consensus 416 YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155 416 YALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999998724999-6689999999999855689999999888852464338999999999998747999999999999
Q ss_pred -------HCCCCHHHHHHHHHHHHHHHHH
Q ss_conf -------1799989999999999997428
Q gi|254780436|r 271 -------VDSRYYRAKNGILRISQDLSST 292 (298)
Q Consensus 271 -------l~P~~~~a~~~la~i~~~lg~~ 292 (298)
++|+-..|..-|+.-....++.
T Consensus 495 ~~~~eg~~~~~t~ka~~fLA~~f~k~~~~ 523 (559)
T KOG1155 495 VSELEGEIDDETIKARLFLAEYFKKMKDF 523 (559)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHCCH
T ss_conf 98861456638999999999999850125
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor; InterPro: IPR005687 The mitochondrial protein translocase (MPT) family, which brings nuclearly encoded preproteins into mitochondria, is very complex with 19 currently identified protein constituents. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom70 proteins. ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane.
Probab=99.70 E-value=4.1e-18 Score=115.15 Aligned_cols=244 Identities=21% Similarity=0.307 Sum_probs=128.5
Q ss_pred CHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 98999999999998168-------99899999999999729852222111111111111111121100000001122221
Q gi|254780436|r 50 GRRVNIDSLTAVIRAHP-------SDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMA 122 (298)
Q Consensus 50 ~~~~Ai~~~~~al~~~P-------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (298)
.|++|-..|+++|..+- ..+.++..+|....-.|+..+|+.++.++++++|.....|...+.+....+...++
T Consensus 337 ~y~~aa~~F~~~Ld~~nede~L~e~~A~~~~~~G~F~~L~~~~~~A~~Dl~K~IEL~P~~~qSYI~~A~~~~~~~~~~~~ 416 (649)
T TIGR00990 337 SYEEAARAFEKALDLGNEDEKLGEKEAIALNLRGIFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASINLELGDPDKA 416 (649)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 27899999999840477511211455554412422233128815789987765422787317899999997415784225
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111222211111112222222222211111111111211112222222222222222111111111222121111111
Q gi|254780436|r 123 IRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISL 202 (298)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (298)
...|..++..++.+..++++++.+... .+.+..+...+.+....+|.....+..++...+..+........+.++...
T Consensus 417 ~~~F~~Al~~~~~~~~~YYHRaQl~FI--~~~f~~A~KDy~K~~~LDp~~IF~~IQL~~~~Y~~~~~~~~~~~F~~~~~~ 494 (649)
T TIGR00990 417 EEDFDKALKKNSEDPDIYYHRAQLHFI--KGEFAQAGKDYQKSIDLDPDFIFSYIQLGVLQYKLGSIASSMALFRRCKKN 494 (649)
T ss_pred HHHHHHHHHCCCCCCCCEEHHHHHHHH--HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 889999986188987511017789988--730776754577664327110226899999886303443478999999861
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCC
Q ss_conf 12221222222222221111111122211122323338------88999999999998---4998999999999986179
Q gi|254780436|r 203 YSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK------KASFWFNGGMVYEM---QGSYANAVKYYKKALSVDS 273 (298)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~------~~~~~~~lg~~~~~---~g~~~~A~~~~~kAl~l~P 273 (298)
.+. .+.+++..+.++..+.++++|++.|+.|+++... +.-.+.+.+.++.+ ..+|.||...++||+.|||
T Consensus 495 Fp~-~P~V~Nyy~ElL~D~~~F~~A~~~fD~AI~LE~~~~~~~~~v~PL~~Ka~~L~~nP~~~~f~EA~~L~EKA~~~DP 573 (649)
T TIGR00990 495 FPE-APDVYNYYGELLLDKNKFDEAIEKFDLAIELEKELKPIYVNVLPLINKALALFQNPWKQDFIEAENLLEKALIIDP 573 (649)
T ss_pred CCC-CCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 778-8885305788861436799999985689998750598076313367789997626521007899999888630488
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999999974288874
Q gi|254780436|r 274 RYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 274 ~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
....|..+||+++-..|+..+++
T Consensus 574 ~~~~A~~~lAQl~LQQ~~v~EAl 596 (649)
T TIGR00990 574 ECDIAVATLAQLLLQQGDVDEAL 596 (649)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 41478999999876234689999
No 22
>KOG1125 consensus
Probab=99.65 E-value=9.7e-17 Score=107.71 Aligned_cols=251 Identities=16% Similarity=0.150 Sum_probs=183.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 8663259799998999999972319999999999998-199899999999999816899899999999999729852222
Q gi|254780436|r 11 FGCGFLRSSKRRGYYSLLSVLVVSVILLIEGCSSLFP-SMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKAL 89 (298)
Q Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 89 (298)
+..|. -.++.-.+..+..-.|.....|...+.... ..+-..||..+.++++++|++-+++..||..|...|.-.+|+
T Consensus 296 m~nG~--L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125 296 MKNGD--LSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHCCC--CHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86389--0599999999986192878999996157650342088999999998469951999999888886146688899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111111111112110000000112222111111222211111112222222222211111111111211112222
Q gi|254780436|r 90 LDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLK 169 (298)
Q Consensus 90 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (298)
..+.+-+...|.........- .+..... ............ ...+.......
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~-----~~~~~~~---------~s~~~~~~l~~i---------------~~~fLeaa~~~ 424 (579)
T KOG1125 374 KMLDKWIRNKPKYVHLVSAGE-----NEDFENT---------KSFLDSSHLAHI---------------QELFLEAARQL 424 (579)
T ss_pred HHHHHHHHHCCCCHHCCCCCC-----CCCCCCC---------CCCCCHHHHHHH---------------HHHHHHHHHHC
T ss_conf 999999984862111146676-----6566677---------677887899999---------------99999999857
Q ss_pred C--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 2--22222222222111111111222121111111122212222222222211111111222111223233388899999
Q gi|254780436|r 170 T--SDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFN 247 (298)
Q Consensus 170 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~ 247 (298)
+ .++.....++..+...+.+..++.++..++...|. +...+..+|..+....+..+|+..|.+|+++.|.+..+++|
T Consensus 425 ~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN 503 (579)
T KOG1125 425 PTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN 503 (579)
T ss_pred CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEHH
T ss_conf 78888427762678974014788899999999704984-17789886688607755399999999998418872653010
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHHHHHHH
Q ss_conf 9999998499899999999998617999----------899999999999974288
Q gi|254780436|r 248 GGMVYEMQGSYANAVKYYKKALSVDSRY----------YRAKNGILRISQDLSSTV 293 (298)
Q Consensus 248 lg~~~~~~g~~~~A~~~~~kAl~l~P~~----------~~a~~~la~i~~~lg~~~ 293 (298)
+|.++..+|-|++|+++|-.||.+.++. ..+|..|-.++.-+++..
T Consensus 504 lgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125 504 LGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 14566205669999999999998653155544477525789999999999708816
No 23
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.63 E-value=1.9e-16 Score=106.15 Aligned_cols=257 Identities=17% Similarity=0.168 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------------
Q ss_conf 99999999998199899999999999816899899999999999729852222111111111111111------------
Q gi|254780436|r 37 LLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK------------ 104 (298)
Q Consensus 37 ~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------ 104 (298)
.....+-.....++...|...|+++++.+|++++++-.+|.++.+.|++.+|+.+|++|.+.+|+...
T Consensus 272 ~Ar~~Gl~aL~~G~l~aAe~~l~~AL~~~PnD~daLGgLG~v~lRqG~~~eA~~yf~rA~~~d~~~~~~~kW~sll~ta~ 351 (1158)
T PRK11447 272 RARQQGLAAVDSGMGGKAIAELQQAVRANPKDSEALGALGQAYSQRGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 351 (1158)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 89998999997799788999999999719998789988899999658889999999999970899854688999998878
Q ss_pred --CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --121100000001122221111112222111111122222222222111111111112111122222222222222221
Q gi|254780436|r 105 --VYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALV 182 (298)
Q Consensus 105 --~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (298)
.....+......++...|...+..+....|....+...++.... ..++...+...+...+...+.+......+...
T Consensus 352 yW~~l~qa~~A~~~g~~~~A~~l~~~A~~~~p~~~~A~l~LaD~~~--a~~d~~~AE~~Yr~~L~~~~~N~~AlrGL~~l 429 (1158)
T PRK11447 352 YWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM--ARKDYAAAERYYQQTLRMDSGNTNAVRGLANI 429 (1158)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999999998799899999999998559998559999999999--83997999999999997489987899999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 111111112221211111111--------222122222222222111111112221112232333888999999999998
Q gi|254780436|r 183 YQMRGEYEKSIEDFSQAISLY--------SSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEM 254 (298)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~ 254 (298)
+.... ..++...+....... ...........+......++...|+..++.++...|+++...+.++.+|..
T Consensus 430 ~~~q~-~~~A~~ll~~l~~~q~~~~~~~~~~l~~~~l~~qA~~~~~~Gd~~~A~~~l~qa~~~~P~dpWlR~~LAr~~~~ 508 (1158)
T PRK11447 430 YRQQS-PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWITYRLAQDLWQ 508 (1158)
T ss_pred HHHHC-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 98639-99999999837998887763144454679999999999978899999999999997189970499999999997
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 499899999999998617999899999999999974288874
Q gi|254780436|r 255 QGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 255 ~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
+|+..+|-..+...+...|+.++.++.-+..+.+.|+.-.++
T Consensus 509 ~G~~~~A~~lM~~l~~~~p~~pe~~yA~ALyls~~~~~~~A~ 550 (1158)
T PRK11447 509 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAAL 550 (1158)
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 799889999999998449999899999999987678879999
No 24
>KOG1129 consensus
Probab=99.61 E-value=6.5e-17 Score=108.64 Aligned_cols=245 Identities=18% Similarity=0.158 Sum_probs=211.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
Q ss_conf 99999981998999999999998168998999999999997298522221111111111111111211000000011222
Q gi|254780436|r 41 GCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP 120 (298)
Q Consensus 41 ~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 120 (298)
.+.++++.+.+.+|-..++.+++..|. ++.+..++.+|.+..+...|+..|...++..|.+.......+.++..+++.+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129 229 MGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 989999816826668999987643776-1699999999987235889999986465238832566663699999997078
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21111112222111111122222222222111111111112111122222222222222221111111112221211111
Q gi|254780436|r 121 MAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAI 200 (298)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (298)
.+...+...++..|.+.+.....+..+.. .++.+.+..++...+...-..+..+..++.+....++.+-....+.++.
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY--~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129 308 DALQLYKLVLKLHPINVEAIACIAVGYFY--DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCCC--CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 89999999984087650035665530013--8986899999999998327776777658889875400303178899998
Q ss_pred CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 11--1222122222222222111111112221112232333888999999999998499899999999998617999899
Q gi|254780436|r 201 SL--YSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRA 278 (298)
Q Consensus 201 ~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a 278 (298)
.. .+....+.+++++.+....|++..|..+|..++..++++.++++|+|..-...|+.++|...++.|-.+.|+-.+.
T Consensus 386 stat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~ 465 (478)
T KOG1129 386 STATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEV 465 (478)
T ss_pred HHCCCCCHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 63368641566664001167703424888888898750585238888768998851276387899998765418530035
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780436|r 279 KNGILRISQD 288 (298)
Q Consensus 279 ~~~la~i~~~ 288 (298)
..|++-+--.
T Consensus 466 ~~Nl~~~s~~ 475 (478)
T KOG1129 466 TTNLQFMSVH 475 (478)
T ss_pred CCCEEEEEEE
T ss_conf 2331577653
No 25
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=99.61 E-value=3.5e-15 Score=99.28 Aligned_cols=191 Identities=19% Similarity=0.260 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 9999999999998199899999999999816899899999999999729--85222211111111111111112110000
Q gi|254780436|r 35 VILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNG--DFEKALLDFQSALDLNPRYYKVYANRALI 112 (298)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (298)
.-.-...+..++++|+++.|.+.+++||+.+|++..+|..||..|...| +.++|...|++|+.+.|++...+.+.|..
T Consensus 37 a~~r~qLal~Yl~~G~~~~Ak~~l~~AL~~dp~~~~a~~~lA~~Yq~~grP~~~~A~~~f~~Al~~~p~~g~~~NNYG~F 116 (247)
T TIGR02521 37 AKIRVQLALGYLEQGDLEKAKENLDKALEHDPDDYDAYLALALYYQQLGRPELEKAEQSFRKALTLKPNNGDVLNNYGTF 116 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEECHHHHH
T ss_conf 99999999999860787899999999987376661289999999987179955789999999862489985232014577
Q ss_pred HCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00011--2222111111222211111112222222222211111111111211112222222222222222111111111
Q gi|254780436|r 113 RYKMG--DVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYE 190 (298)
Q Consensus 113 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (298)
+...+ .++.|...|..++...
T Consensus 117 LC~~g~~~~~~A~~~F~~A~~~p--------------------------------------------------------- 139 (247)
T TIGR02521 117 LCQQGNDKYEQAEQQFEAAIEDP--------------------------------------------------------- 139 (247)
T ss_pred HHHCCCCCHHHHHHHHHHHHHCC---------------------------------------------------------
T ss_conf 64048970689999999998668---------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 22212111111112221222222222221111111122211122323338889999999999984998999999999986
Q gi|254780436|r 191 KSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270 (298)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~ 270 (298)
.. ......+.+.|.|....++.+.|...|.+++..+|+.+.++..|+.+++..|++.+|...|++-.+
T Consensus 140 -----------~Y-~~~~~~~eN~G~C~~~~g~~~~A~~~l~~Al~~dp~~p~~lleLa~l~~~~g~~~~A~~~l~ry~~ 207 (247)
T TIGR02521 140 -----------LY-PQPARSYENAGLCALKAGDTEKAEKYLTRALKIDPQRPESLLELAELYYERGQYAQARALLERYQQ 207 (247)
T ss_pred -----------CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf -----------89-733024554999998617868899999999985878885579999998750772899999999998
Q ss_pred HC---CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 17---9998999999999999742888
Q gi|254780436|r 271 VD---SRYYRAKNGILRISQDLSSTVN 294 (298)
Q Consensus 271 l~---P~~~~a~~~la~i~~~lg~~~~ 294 (298)
.- +..++.+.--.+|-..+|+...
T Consensus 208 ~~G~~~~~a~sL~Lg~riA~~~Gd~~~ 234 (247)
T TIGR02521 208 TVGVKNQTAESLWLGIRIARALGDVAA 234 (247)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 736788887347899999998442999
No 26
>KOG4162 consensus
Probab=99.57 E-value=3.6e-16 Score=104.64 Aligned_cols=243 Identities=19% Similarity=0.168 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 899999999999816899899999999999729852222111111111-1111111211000000011222211111122
Q gi|254780436|r 51 RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDL-NPRYYKVYANRALIRYKMGDVPMAIRDYGTA 129 (298)
Q Consensus 51 ~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 129 (298)
..++++.++++++.+|+|+.+.+.++.-|...++.+.|.....+++++ .......|..++.+....+++..|......+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999861899824899999999999769999999999987157764889999999996224167789999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------------------------CCCCCCCCCCC
Q ss_conf 22111111122222222222111111-------------------------------------------11111211112
Q gi|254780436|r 130 LKINPDYDVAYIGRGNIYRDERYSDL-------------------------------------------QKAFADFDRAI 166 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~ 166 (298)
+...+.+.........+.. ..++. ..+........
T Consensus 540 l~E~~~N~~l~~~~~~i~~--~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162 540 LEEFGDNHVLMDGKIHIEL--TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHHHHHHCHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 9974122200101110122--11658888888999999987311676654134566541211437656545303468988
Q ss_pred C-------------------CCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2-------------------2222222-------2222222111111111222121111111122212222222222211
Q gi|254780436|r 167 Q-------------------LKTSDGR-------AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLA 220 (298)
Q Consensus 167 ~-------------------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (298)
. ..+.... .+...+......+....+..+..++....+ .....++..|..+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~ 696 (799)
T KOG4162 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEV 696 (799)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH
T ss_conf 9998655421561016741015788732789999999999998853883288999999875031-338999986489998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1111112221112232333888999999999998499899999--999998617999899999999999974288874
Q gi|254780436|r 221 TKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVK--YYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 221 ~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
.+...+|...|..++..+|+++.+...+|.++.+.|+..-|.. ....|+++||.+++||..||.+.+.+|+...++
T Consensus 697 ~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162 697 KGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 774689999999987328887477899999999718842077899999998608877799999999999746667899
No 27
>KOG0548 consensus
Probab=99.57 E-value=1.8e-16 Score=106.22 Aligned_cols=260 Identities=22% Similarity=0.291 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 99999999998199899999999999816899899999999999729852222111111111111111121100000001
Q gi|254780436|r 37 LLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKM 116 (298)
Q Consensus 37 ~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 116 (298)
.........+..+++..|+..|+.+|.++|.+...|.|+..+|..+|+|++|+.+-.+.+++.|..+..|...|......
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 78877775514666789999998887069975201010678888775699999889887760884236778757898720
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------------------CCCCCCCCCCCCCCCCCCC
Q ss_conf 122221111112222111111122222222222111111----------------------1111121111222222222
Q gi|254780436|r 117 GDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDL----------------------QKAFADFDRAIQLKTSDGR 174 (298)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 174 (298)
|+++.|+..+...+..+|.+......+............ ..........+..+|....
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCHHHHHHHHHHHCCCHHHH
T ss_conf 53899999998775329845999974888656778753120182999876127555556415789999998603827650
Q ss_pred CC--------------------------------------------------------------CCCCCCCCCCCCCCCC
Q ss_conf 22--------------------------------------------------------------2222211111111122
Q gi|254780436|r 175 AW--------------------------------------------------------------YGRALVYQMRGEYEKS 192 (298)
Q Consensus 175 ~~--------------------------------------------------------------~~~~~~~~~~~~~~~~ 192 (298)
.. ..++...........+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 20252799999988726740000113444578999966556787776204689999988645789988998874548999
Q ss_pred CCCCCCCCCCCCCCC----------------------------------------CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 212111111112221----------------------------------------2222222222211111111222111
Q gi|254780436|r 193 IEDFSQAISLYSSIS----------------------------------------PDYYNGRGISYLATKNYDSALEDFK 232 (298)
Q Consensus 193 ~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~a~~~~~ 232 (298)
...+...+... ... ......+|..+...++++.++..+.
T Consensus 244 ~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548 244 IQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998675-66678888988997313798744220889987578999999999999986311355776788999999
Q ss_pred CCCCCC--------------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 223233--------------------------388899999999999849989999999999861799989999999999
Q gi|254780436|r 233 FAINLD--------------------------PKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRIS 286 (298)
Q Consensus 233 ~a~~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~ 286 (298)
+++... |.-+.--...|..++..|+|.+|+..|.+||..+|++...+.|.|.++
T Consensus 323 kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548 323 KALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 98663258887877789999999988887318467899998778877535889999999999842984157888899999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99742888743
Q gi|254780436|r 287 QDLSSTVNEVN 297 (298)
Q Consensus 287 ~~lg~~~~~~n 297 (298)
..||+.-.++.
T Consensus 403 ~kL~~~~~aL~ 413 (539)
T KOG0548 403 LKLGEYPEALK 413 (539)
T ss_pred HHHHHHHHHHH
T ss_conf 98731798998
No 28
>KOG1174 consensus
Probab=99.54 E-value=4.9e-15 Score=98.45 Aligned_cols=285 Identities=17% Similarity=0.169 Sum_probs=204.3
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 764889989866325979999899---99999723199999999999981998999999999998168998999999999
Q gi|254780436|r 2 YLPSWISDKFGCGFLRSSKRRGYY---SLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVV 78 (298)
Q Consensus 2 y~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~ 78 (298)
|+.-|+--.-.|...+.+.+...+ .....+..++-.+...+..++..|++.+|+..|+++.-+||...++.-.-|..
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L 275 (564)
T KOG1174 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 89999999999970353036658887876540676088998875565341675689999988750781555568999999
Q ss_pred HHHCC----------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 99729----------------------------------85222211111111111111112110000000112222111
Q gi|254780436|r 79 YGMNG----------------------------------DFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIR 124 (298)
Q Consensus 79 ~~~~g----------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (298)
+...| +++.|+.+-+++++.+|.+..++...|..+...++.+.|.-
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174 276 LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHCCCHHHHHH
T ss_conf 98604876789999999852202324023431014577668999999988761585533678861399885456288999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11122221111111222222222221111111111121111222222222222222--2111111111222121111111
Q gi|254780436|r 125 DYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRA--LVYQMRGEYEKSIEDFSQAISL 202 (298)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 202 (298)
.|..+..+.|.....+..+..+|... +...++...........+.........+ .........+++...+...+..
T Consensus 356 aFR~Aq~Lap~rL~~Y~GL~hsYLA~--~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174 356 AFRTAQMLAPYRLEIYRGLFHSYLAQ--KRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI 433 (564)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 99998742514578998899999961--4089999999999997653144676630001156850679999999842035
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 12221222222222221111111122211122323338889999999999984998999999999986179998999999
Q gi|254780436|r 203 YSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGI 282 (298)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~l 282 (298)
.|... .....++..+...+.+..++..+++.+...|+. ..+..+|.++...+.+.+|.++|.+|+.+||++..+..+|
T Consensus 434 ~P~Y~-~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174 434 NPIYT-PAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred CCCHH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 88608-999999999986276541899999987425620-8999999999986107999999999970596407788889
Q ss_pred HHHHHHHH
Q ss_conf 99999974
Q gi|254780436|r 283 LRISQDLS 290 (298)
Q Consensus 283 a~i~~~lg 290 (298)
-++-++..
T Consensus 512 ~~lEK~~~ 519 (564)
T KOG1174 512 RLLEKSDD 519 (564)
T ss_pred HHHHHCCC
T ss_conf 99874348
No 29
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.52 E-value=8.1e-15 Score=97.27 Aligned_cols=82 Identities=24% Similarity=0.413 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 222222221111111122211122323338--8-8999999999998499899999999998617999899999999999
Q gi|254780436|r 211 YNGRGISYLATKNYDSALEDFKFAINLDPK--K-ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 211 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~--~-~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~ 287 (298)
+...|......|++.+|++.+.+++++.|+ + +.+++|+|.+|...|++++|+++|++||+++|+++.|+.|||.++.
T Consensus 38 Yy~~G~~~q~~G~Y~EAle~Y~kAL~Le~dp~D~s~ilyNiGlIY~~~G~~~kAie~Y~kALeiNP~~~~AlNNlgvIY~ 117 (172)
T PRK02603 38 YYRDGMSAQNDGDYAEALENYEEALKLEEDPNDRSYILYNMAIIYASNGEHDKALETYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99722577745799999999999872778962089999779999998699889999999999868997899999999999
Q ss_pred HHHHH
Q ss_conf 97428
Q gi|254780436|r 288 DLSST 292 (298)
Q Consensus 288 ~lg~~ 292 (298)
..|..
T Consensus 118 k~G~~ 122 (172)
T PRK02603 118 KRGRK 122 (172)
T ss_pred HHHHH
T ss_conf 98599
No 30
>KOG2076 consensus
Probab=99.52 E-value=1.7e-14 Score=95.49 Aligned_cols=287 Identities=15% Similarity=0.110 Sum_probs=147.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98663259799998999999972319999999999998-19989999999999981689989999999999972985222
Q gi|254780436|r 10 KFGCGFLRSSKRRGYYSLLSVLVVSVILLIEGCSSLFP-SMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKA 88 (298)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 88 (298)
.+..-.....+.....-.++.+.+.....|.....+.. ++++.+|.-+|++||+.+|.+.+....+..+|.++|++..|
T Consensus 181 ~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~A 260 (895)
T KOG2076 181 EIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRA 260 (895)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHHHH
T ss_conf 99998032999999999999669988689999999998601299999999999860886228999999999984707888
Q ss_pred CCCCCCCCCCCCCCCC-----CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCC------------
Q ss_conf 2111111111111111-----121100000001122221111112222111111--122222222222------------
Q gi|254780436|r 89 LLDFQSALDLNPRYYK-----VYANRALIRYKMGDVPMAIRDYGTALKINPDYD--VAYIGRGNIYRD------------ 149 (298)
Q Consensus 89 ~~~~~~al~~~~~~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~------------ 149 (298)
...|.+.+...|.... .....+..+...+..+.+...+........... .........+..
T Consensus 261 m~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~ 340 (895)
T KOG2076 261 METFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIV 340 (895)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998628901589999999999999997107899999999777410340356278999999998678887669999
Q ss_pred -------------------------------------------------CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf -------------------------------------------------111111111112111122-222222222222
Q gi|254780436|r 150 -------------------------------------------------ERYSDLQKAFADFDRAIQ-LKTSDGRAWYGR 179 (298)
Q Consensus 150 -------------------------------------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 179 (298)
........+...+..... ........+...
T Consensus 341 ~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~ 420 (895)
T KOG2076 341 DDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDL 420 (895)
T ss_pred HHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 98601367871654002203455532014787777563057675432002443458889888888337845557899999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 22111111111222121111111122212222222222211111111222111223233388899999999999849989
Q gi|254780436|r 180 ALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYA 259 (298)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 259 (298)
...+...+.+..+...+..............+..+|.++...+.++.|++.+.+++...|++.++...|+.++.++|+.+
T Consensus 421 a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E 500 (895)
T KOG2076 421 ADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHE 500 (895)
T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHH
T ss_conf 99998365588899999998648333551346989999998742899999999999528986016631999997638888
Q ss_pred HHHHHHHHHHHHCCCCHH---------HHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999861799989---------9999999999974288874
Q gi|254780436|r 260 NAVKYYKKALSVDSRYYR---------AKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 260 ~A~~~~~kAl~l~P~~~~---------a~~~la~i~~~lg~~~~~~ 296 (298)
+|.+...+...-||.+.+ .......++...|+...-+
T Consensus 501 kalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076 501 KALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999871345899400222003677789999999999800199999
No 31
>KOG1127 consensus
Probab=99.51 E-value=1.8e-15 Score=100.84 Aligned_cols=291 Identities=14% Similarity=0.113 Sum_probs=180.8
Q ss_pred CHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------H-
Q ss_conf 6488998-9866325979999899999997231999999999------------------------------------9-
Q gi|254780436|r 3 LPSWISD-KFGCGFLRSSKRRGYYSLLSVLVVSVILLIEGCS------------------------------------S- 44 (298)
Q Consensus 3 ~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~- 44 (298)
-|+|... .+.+..-...++...|..+..++.+....+..+. .
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHCCCC
T ss_conf 38999988999878989999999988863791234467888887631541889999998874215477877523540434
Q ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCC
Q ss_conf 99819989999999999981689989999999999972985222211111111111111112110000000112222111
Q gi|254780436|r 45 LFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIR 124 (298)
Q Consensus 45 ~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 124 (298)
+...++...|+..|+.+++.+|++...|..+|.+|...|++..|++.|.++..++|......+..+.+....|.+..+..
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 36852155589999998638906578899877887743762007776424574482768999999999987666899999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCC--------------------------------
Q ss_conf 111222211111112222222222211------------111111111--------------------------------
Q gi|254780436|r 125 DYGTALKINPDYDVAYIGRGNIYRDER------------YSDLQKAFA-------------------------------- 160 (298)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-------------------------------- 160 (298)
.+...+............++....... ..-.+..+.
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~ 731 (1238)
T KOG1127 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEP 731 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999887777631189999999899998888640068999989999999887543257899997478899998514
Q ss_pred --------------------------------CCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCC
Q ss_conf --------------------------------2111122222222222222221111--------111112221211111
Q gi|254780436|r 161 --------------------------------DFDRAIQLKTSDGRAWYGRALVYQM--------RGEYEKSIEDFSQAI 200 (298)
Q Consensus 161 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 200 (298)
.....+. .......++.++..+.. ......+.....+.+
T Consensus 732 ~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127 732 SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 515899999999888750367631388888887467777-7633442888759999999980775213799999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 11122212222222222211111111222111223233388899999999999849989999999999861799989999
Q gi|254780436|r 201 SLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKN 280 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~ 280 (298)
....++ ...+..+|.. ...+++.-+..+|-+.+...|.+.-.|.|+|.++.+..+++-|-..|.++..++|.+...|.
T Consensus 811 ~L~ann-~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~Wl 888 (1238)
T KOG1127 811 SLCANN-EGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWL 888 (1238)
T ss_pred HHHHCC-HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCCHHHEECCCEEEEECCCHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 886231-8899998886-15431455535534455316430100003324677432277765788752414805457898
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999974288874
Q gi|254780436|r 281 GILRISQDLSSTVNEV 296 (298)
Q Consensus 281 ~la~i~~~lg~~~~~~ 296 (298)
+.+.+.+.+|+.++.+
T Consensus 889 G~Ali~eavG~ii~~~ 904 (1238)
T KOG1127 889 GEALIPEAVGRIIERL 904 (1238)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 8888699987799899
No 32
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.51 E-value=1.5e-14 Score=95.86 Aligned_cols=76 Identities=24% Similarity=0.310 Sum_probs=53.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCC--C-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 999819989999999999981689--9-899999999999729852222111111111111111121100000001122
Q gi|254780436|r 44 SLFPSMGRRVNIDSLTAVIRAHPS--D-PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDV 119 (298)
Q Consensus 44 ~~~~~~~~~~Ai~~~~~al~~~P~--~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 119 (298)
..-..|+|.+|++.|.++|++.|+ + +.+++++|.+|...|++++|+++|.+|++++|+.+.++.++|.++...|..
T Consensus 44 ~~q~~G~Y~EAle~Y~kAL~Le~dp~D~s~ilyNiGlIY~~~G~~~kAie~Y~kALeiNP~~~~AlNNlgvIY~k~G~~ 122 (172)
T PRK02603 44 SAQNDGDYAEALENYEEALKLEEDPNDRSYILYNMAIIYASNGEHDKALETYHQALELNPKQPSALNNIAVIYHKRGRK 122 (172)
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7774579999999999987277896208999977999999869988999999999986899789999999999998599
No 33
>PRK11788 hypothetical protein; Provisional
Probab=99.50 E-value=1.4e-14 Score=95.91 Aligned_cols=221 Identities=19% Similarity=0.150 Sum_probs=158.4
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCHHHCC
Q ss_conf 99999981998999999999998168998999999999997298522221111111111111-----1112110000000
Q gi|254780436|r 41 GCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY-----YKVYANRALIRYK 115 (298)
Q Consensus 41 ~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~ 115 (298)
.+-.+.-+.+.++||+.|.++++.||+..+.+..+|..+.+.|++++||..-+..+.. |+. ..+...+|.-+..
T Consensus 41 ~Gln~Ll~~q~dkAid~f~~~~~~~~~t~e~hlaLG~LfRrrGE~dRAIriHq~Ll~r-p~L~~~~r~~a~~ELa~Dy~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHH
T ss_conf 8998872589459999999998648114999999999999656088999999999728-798999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11222211111122221111111222222222221111111111121111222222222222222211111111122212
Q gi|254780436|r 116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED 195 (298)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (298)
.|-.+.|...+.......+....+...+..++. ...++..++..........
T Consensus 120 aGllDRAE~~f~~l~~~~~~~~~al~~Ll~iye--~~~dW~~Ai~~a~~L~~~~-------------------------- 171 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEDDFAEGALRQLLTIYQ--QEKDWQKAIEVAERLEKLG-------------------------- 171 (389)
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHCC--------------------------
T ss_conf 774999999999998285426999999999999--8645999999999998704--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 11111111222122222222222111111112221112232333888999999999998499899999999998617999
Q gi|254780436|r 196 FSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 (298)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~ 275 (298)
..........++..++......++...|...+.+|+..+|+.+.++..+|.++...|++++|+..++++.+.+|.+
T Consensus 172 ----~~~~~~~iAhy~CElA~~~~~~~~~~~A~~~L~kAL~~dp~cvRA~lllg~l~~~~g~~~~Ai~~l~~i~~q~p~~ 247 (389)
T PRK11788 172 ----GDSLRKEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHH
T ss_conf ----7650699999999999999874899999999999987482434189999999998799999999999999739577
Q ss_pred H-HHHHHHHHHHHHHHHHHH
Q ss_conf 8-999999999999742888
Q gi|254780436|r 276 Y-RAKNGILRISQDLSSTVN 294 (298)
Q Consensus 276 ~-~a~~~la~i~~~lg~~~~ 294 (298)
. .+...|..+++.+|+..+
T Consensus 248 l~~vl~~L~~~y~~l~~~~~ 267 (389)
T PRK11788 248 LPEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999998288889
No 34
>KOG2003 consensus
Probab=99.49 E-value=1.1e-15 Score=102.07 Aligned_cols=78 Identities=24% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 222221111111122211122323338889999999999984998999999999986179998999999999999742
Q gi|254780436|r 214 RGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSS 291 (298)
Q Consensus 214 ~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~ 291 (298)
.|...+..|+++.|...+..++..+....++++|+|..+..+|+.++|+++|-|.-.|--++.+.+..++.|+..+.+
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led 573 (840)
T KOG2003 496 KGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLED 573 (840)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 775444158689999999999717428899999711239874478999999999999997029999999999998548
No 35
>KOG0553 consensus
Probab=99.47 E-value=1.3e-14 Score=96.20 Aligned_cols=112 Identities=26% Similarity=0.377 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 99999999999819989999999999981689989999999999972985222211111111111111112110000000
Q gi|254780436|r 36 ILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYK 115 (298)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (298)
-.+-..+..+.+.++|++|+..|++||+++|+++..|.+|+.+|.++|.++.|+++.+.++.++|....+|..+|..+..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf 99999889999862599999999999845887626777899999986011789999999776290899999998799980
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11222211111122221111111222222222
Q gi|254780436|r 116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNIY 147 (298)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
++++..|+..|.+++.++|.+......+....
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 67379999999764316888489998899999
No 36
>KOG0495 consensus
Probab=99.47 E-value=6.1e-14 Score=92.53 Aligned_cols=259 Identities=14% Similarity=0.085 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 97999989999999723199999999999981998999999999998168998999999999997298522221111111
Q gi|254780436|r 17 RSSKRRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSAL 96 (298)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 96 (298)
+.++++.++..+-......-+.+..+.....+++.++|+..++++++..|..+..|..+|.++.++++.+.|-+.|...+
T Consensus 633 e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495 633 ELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 48999999999750288512678776899986407999999999988487558999998689999877999999997025
Q ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111121100000001122221111112222111111122222222222111111111112111122222222222
Q gi|254780436|r 97 DLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAW 176 (298)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (298)
+.-|.....|..++.+....+....|...+.++...+|.+...+.... ......+....+.....+++...|.....+
T Consensus 713 k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~I--r~ElR~Gn~~~a~~lmakALQecp~sg~LW 790 (913)
T KOG0495 713 KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESI--RMELRAGNKEQAELLMAKALQECPSSGLLW 790 (913)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 648898129999977888726526699998888734998626499999--999974889999999999998687522268
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 22222111111111222121111111122212222222222211111111222111223233388899999999999849
Q gi|254780436|r 177 YGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQG 256 (298)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g 256 (298)
..........+......... . ....++......+..+....+++.+...|.+++..+|++.++|...=..+...|
T Consensus 791 aEaI~le~~~~rkTks~DAL----k-kce~dphVLlaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495 791 AEAIWLEPRPQRKTKSIDAL----K-KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHCCCCCCCHHHHHHH----H-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 99987046766521778999----8-516895539999999998888999999999997028864129999999999837
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 98999999999986179998999999
Q gi|254780436|r 257 SYANAVKYYKKALSVDSRYYRAKNGI 282 (298)
Q Consensus 257 ~~~~A~~~~~kAl~l~P~~~~a~~~l 282 (298)
.-++-.+.|.+....+|.|.+-|...
T Consensus 866 ~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495 866 TEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 77779999998760599877078887
No 37
>KOG0550 consensus
Probab=99.46 E-value=1.9e-14 Score=95.21 Aligned_cols=269 Identities=16% Similarity=0.152 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-
Q ss_conf 7999989999999723199999-99999998199899999999999816899899999999999729852222111111-
Q gi|254780436|r 18 SSKRRGYYSLLSVLVVSVILLI-EGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSA- 95 (298)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a- 95 (298)
...+...+..+..+.+.....| +.+.++..-+.+++|+-+.++.++++|..+..+...|.++..+++..+|...++..
T Consensus 65 Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~ 144 (486)
T KOG0550 65 YGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQ 144 (486)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHCHHHHHHHHHHHHHHCCCCHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88899888999985840036544168899987767524211665300578741012452244555678898998862101
Q ss_pred --------------CCC---CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------------111---111111121100000001122221111112222111111122222222222111111111
Q gi|254780436|r 96 --------------LDL---NPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKA 158 (298)
Q Consensus 96 --------------l~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (298)
+.. .|....+....+.++...++...+.......++.++.+.......+.+... ..+...+
T Consensus 145 ~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy--~~~~~ka 222 (486)
T KOG0550 145 AYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY--NDNADKA 222 (486)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC--CCCHHHH
T ss_conf 66776531222002423467732567887410565430343167788888875163016788861533102--3206888
Q ss_pred CCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCC
Q ss_conf 11211112222222222------------22222211111111122212111111112221---2222222222211111
Q gi|254780436|r 159 FADFDRAIQLKTSDGRA------------WYGRALVYQMRGEYEKSIEDFSQAISLYSSIS---PDYYNGRGISYLATKN 223 (298)
Q Consensus 159 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 223 (298)
+..+.+.+...|..... ....+......+.+..+.+.+..++.++|.+. ...+..++.+....++
T Consensus 223 ~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr 302 (486)
T KOG0550 223 INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR 302 (486)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 88876520268025667767640789998875056676344246789988776337932222468999876766420677
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 111222111223233388899999999999849989999999999861799989999999999997
Q gi|254780436|r 224 YDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDL 289 (298)
Q Consensus 224 ~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~l 289 (298)
..+++..+..++.++|....++..+|.|+..+++|++|+++|++|++...+ .+.+..|......|
T Consensus 303 l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aL 367 (486)
T KOG0550 303 LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLAL 367 (486)
T ss_pred CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_conf 165665446666347988899999889888998999999999999863056-10678999999999
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.46 E-value=6.9e-14 Score=92.22 Aligned_cols=70 Identities=26% Similarity=0.299 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 2111111112221112232333888999999999998499899999999998617999899999999999
Q gi|254780436|r 218 YLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 218 ~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~ 287 (298)
....+++.+|...+..+...+|+++.+...||.++...|++.+|...|+++|..+|.|..|..+|..|++
T Consensus 362 A~~~g~~~~A~~l~~~A~~~~p~~~~A~l~LaD~~~a~~d~~~AE~~Yr~~L~~~~~N~~AlrGL~~l~~ 431 (1158)
T PRK11447 362 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQTLRMDSGNTNAVRGLANIYR 431 (1158)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9987998999999999985599985599999999998399799999999999748998789999999998
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW; InterPro: IPR013360 Proteins in this entry are designated PilF and PilW . This outer membrane protein is required both for pilus stability and for pilus functions such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain..
Probab=99.45 E-value=1.6e-14 Score=95.63 Aligned_cols=159 Identities=22% Similarity=0.322 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999999999997298522221111111111111111211000000011--22221111112222111111122222222
Q gi|254780436|r 69 PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG--DVPMAIRDYGTALKINPDYDVAYIGRGNI 146 (298)
Q Consensus 69 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 146 (298)
+.++..||..|++.|+++.|.+.+++||+.+|++..++..++..+...+ +.+.|...|.+++.+.|++..+.++.|..
T Consensus 37 a~~r~qLal~Yl~~G~~~~Ak~~l~~AL~~dp~~~~a~~~lA~~Yq~~grP~~~~A~~~f~~Al~~~p~~g~~~NNYG~F 116 (247)
T TIGR02521 37 AKIRVQLALGYLEQGDLEKAKENLDKALEHDPDDYDAYLALALYYQQLGRPELEKAEQSFRKALTLKPNNGDVLNNYGTF 116 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEECHHHHH
T ss_conf 99999999999860787899999999987376661289999999987179955789999999862489985232014577
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22211111111111211112222222222222222111111--1112221211111111222122222222222111111
Q gi|254780436|r 147 YRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRG--EYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNY 224 (298)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (298)
.. ..+ .++.+...+..+ ...+.
T Consensus 117 LC------------------------------------~~g~~~~~~A~~~F~~A--~~~p~------------------ 140 (247)
T TIGR02521 117 LC------------------------------------QQGNDKYEQAEQQFEAA--IEDPL------------------ 140 (247)
T ss_pred HH------------------------------------HCCCCCHHHHHHHHHHH--HHCCC------------------
T ss_conf 64------------------------------------04897068999999999--86688------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 112221112232333888999999999998499899999999998617999899999999999974288874
Q gi|254780436|r 225 DSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 225 ~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
.+.-+.+|-|+|.|..+.|+.++|..+|++|+++||+.+.+...|+++..+.|+...+.
T Consensus 141 -------------Y~~~~~~~eN~G~C~~~~g~~~~A~~~l~~Al~~dp~~p~~lleLa~l~~~~g~~~~A~ 199 (247)
T TIGR02521 141 -------------YPQPARSYENAGLCALKAGDTEKAEKYLTRALKIDPQRPESLLELAELYYERGQYAQAR 199 (247)
T ss_pred -------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf -------------97330245549999986178688999999999858788855799999987507728999
No 40
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=1e-13 Score=91.35 Aligned_cols=221 Identities=19% Similarity=0.226 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 999999999998-1998999999999998168998999999999997298522221111111111111111211000000
Q gi|254780436|r 36 ILLIEGCSSLFP-SMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 (298)
Q Consensus 36 ~~~~~~~~~~~~-~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (298)
..++..-+.++. .|-+.-|--+|+++++++|+.+++|+.+|.-+...|+|+.|.+.|+.+++++|+...++.++|..+.
T Consensus 65 A~l~yeRGvlyDSlGLr~LAR~DF~qAL~l~P~~adayN~LGiy~tq~~~fD~AyEAFDs~LEL~P~y~YA~lNRGIAlY 144 (297)
T PRK11189 65 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQEGEFDAAYEAFDSVLELDPTYDYAYLNRGIALY 144 (297)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99999831477641209999864998975399858999999999999711999999987777269873489983027887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 01122221111112222111111122222222222111111111112111122222222222222221111111112221
Q gi|254780436|r 115 KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIE 194 (298)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (298)
..++++.|...+......+|.++-....+.... ...+...+...+.............+.
T Consensus 145 Yg~R~~LA~~D~~~fy~~dp~DpYR~LWLYl~e---~~~d~~~A~~~L~~r~~~~~~~~W~~~----------------- 204 (297)
T PRK11189 145 YGGRYDLAQDDLLAFYQDDPNDPYRALWLYLIE---QKLDPKQAKENLKQRYEKLDKEQWGWN----------------- 204 (297)
T ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---CCCCHHHHHHHHHHHHHHCCCHHHHHH-----------------
T ss_conf 446378899999999960999827999999998---116999999999999983571226899-----------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 21111111122212222222222211111111222111223233----38889999999999984998999999999986
Q gi|254780436|r 195 DFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLD----PKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270 (298)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~ 270 (298)
+...+.......+.+......++.+ ..-.++|+.+|..+..+|++++|+..|+-|+.
T Consensus 205 -------------------iV~~ylg~ise~~~~~~~~~~~~~n~~lAErLcEaYFYLaK~~~~~G~~~~A~~~fKLAla 265 (297)
T PRK11189 205 -------------------IVDFYLGKISEEQLFERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAANLFKLALA 265 (297)
T ss_pred -------------------HHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf -------------------9999945899999999998727370999999999999999999987998999999999870
Q ss_pred HCCC----CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1799----989999999999997428887
Q gi|254780436|r 271 VDSR----YYRAKNGILRISQDLSSTVNE 295 (298)
Q Consensus 271 l~P~----~~~a~~~la~i~~~lg~~~~~ 295 (298)
-+.- |.-|...|+++.+.+....+.
T Consensus 266 ~NVyeFVEhRYA~lEL~~l~~~~~~~~~~ 294 (297)
T PRK11189 266 NNVYNFVEHRYALLELALLGQDLDDLAES 294 (297)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48258889999999999999999999872
No 41
>KOG1840 consensus
Probab=99.44 E-value=1.6e-14 Score=95.61 Aligned_cols=233 Identities=18% Similarity=0.114 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC--------C
Q ss_conf 99999999999819989999999999981--------6899899999999999729852222111111111--------1
Q gi|254780436|r 36 ILLIEGCSSLFPSMGRRVNIDSLTAVIRA--------HPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDL--------N 99 (298)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~Ai~~~~~al~~--------~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~ 99 (298)
..+...+..+..++++++|+..++.++++ +|.-......+|.+|..+++|.+|+..|++++.+ +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89999999999852077899999999999987037666899999999999999744289999999999999998538987
Q ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111121100000001122221111112222111111122222222222111111111112111122222222222222
Q gi|254780436|r 100 PRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGR 179 (298)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (298)
|.-..++.+++..+...+++.++...+..+..+........ .+.........
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~----------------------------~~~v~~~l~~~ 331 (508)
T KOG1840 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS----------------------------HPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC----------------------------HHHHHHHHHHH
T ss_conf 89999998899998604775778999999999999850368----------------------------58999999899
Q ss_pred CCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCHHH
Q ss_conf 2211111111122212-------1111111122212222222222211111111222111223233--------388899
Q gi|254780436|r 180 ALVYQMRGEYEKSIED-------FSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLD--------PKKASF 244 (298)
Q Consensus 180 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--------p~~~~~ 244 (298)
+.........+.+... +..............+..++..+..+|++.+|...+.++++.. +.....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 99998852056899999999999986146410578989989999999944656799999999999886156767145478
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999849989999999999861-------7999899999999999974288874
Q gi|254780436|r 245 WFNGGMVYEMQGSYANAVKYYKKALSV-------DSRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 245 ~~~lg~~~~~~g~~~~A~~~~~kAl~l-------~P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
+.++|..|.+++++.+|...|.+++.| .|+-...+.||+.+|..+|+...++
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999983460228999999988999858899746899988999999735688899
No 42
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.43 E-value=3.2e-13 Score=88.64 Aligned_cols=89 Identities=22% Similarity=0.309 Sum_probs=77.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 222222222221111111122211122323338---88999999999998499899999999998617999899999999
Q gi|254780436|r 208 PDYYNGRGISYLATKNYDSALEDFKFAINLDPK---KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILR 284 (298)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~ 284 (298)
...++.-|......|++.+|++.+.+++++.++ .+.+++|+|.+|...|++++|+++|.+||+++|+++.|+.|||.
T Consensus 31 af~yyr~GmsaQs~GeyaEALe~Y~eAL~Le~D~~Drs~iLYNIGlIy~~nGe~~kALeyY~qALeiNP~~pqA~NNlGv 110 (165)
T CHL00033 31 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 110 (165)
T ss_pred HHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999815101013538999999998623456851266899899999998588889999999999859996899978999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999974288874
Q gi|254780436|r 285 ISQDLSSTVNEV 296 (298)
Q Consensus 285 i~~~lg~~~~~~ 296 (298)
|+...|..-.+-
T Consensus 111 Iyh~qG~~a~~~ 122 (165)
T CHL00033 111 ICHYRGEQAIEQ 122 (165)
T ss_pred HHHHHHHHHHHC
T ss_conf 999987999984
No 43
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.42 E-value=1.8e-12 Score=84.60 Aligned_cols=190 Identities=21% Similarity=0.195 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 99999999999819989999999999981689989999999999972985222211111111111111112110000000
Q gi|254780436|r 36 ILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYK 115 (298)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (298)
...+..+-.+++++++..|...+++||+++|++..+|..++.+|...|+.+.|-+.|++++.++|++.....+.|..+..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99999999999778999999889999884952088999999999990775567999999985298864055210699970
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11222211111122221111111222222222221111111111121111222222222222222211111111122212
Q gi|254780436|r 116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED 195 (298)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (298)
.+.++++...+..++.. |...
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~---------------------------------------------------------- 136 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYG---------------------------------------------------------- 136 (250)
T ss_pred CCCHHHHHHHHHHHHHC-CCCC----------------------------------------------------------
T ss_conf 89868999999998718-8877----------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 11111111222122222222222111111112221112232333888999999999998499899999999998617999
Q gi|254780436|r 196 FSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 (298)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~ 275 (298)
.....+.++|.|....++++.+...+++++..+|+++...-.++..+++.|+|-.|...+++...--+-.
T Consensus 137 ----------~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~ 206 (250)
T COG3063 137 ----------EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQ 206 (250)
T ss_pred ----------CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf ----------7530454457888643770447999999988375787678998798875313018999999997025665
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999742888
Q gi|254780436|r 276 YRAKNGILRISQDLSSTVN 294 (298)
Q Consensus 276 ~~a~~~la~i~~~lg~~~~ 294 (298)
.+.+.-..+|-+.+|+...
T Consensus 207 A~sL~L~iriak~~gd~~~ 225 (250)
T COG3063 207 AESLLLGIRIAKRLGDRAA 225 (250)
T ss_pred HHHHHHHHHHHHHHCCHHH
T ss_conf 8999989999999654889
No 44
>KOG1129 consensus
Probab=99.40 E-value=7.8e-15 Score=97.35 Aligned_cols=219 Identities=19% Similarity=0.241 Sum_probs=187.3
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999729852222111111111111111121100000001122221111112222111111122222222222111
Q gi|254780436|r 73 NVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERY 152 (298)
Q Consensus 73 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (298)
..+|.||.++|-+.+|.+.++.+++..| .++.+..+...+....+...+...+...+...|.+.........+ ....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi--~eam 303 (478)
T KOG1129 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI--HEAM 303 (478)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH--HHHH
T ss_conf 9998999981682666899998764377-616999999999872358899999864652388325666636999--9999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111211112222222222222222111111111222121111111122212222222222211111111222111
Q gi|254780436|r 153 SDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFK 232 (298)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 232 (298)
+..+.+...+.......+.+.......+..+...++.+.+...+.+.+.... ..+..+.++|.+....++++-.+..|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 7078899999999840876500356655300138986899999999998327-776777658889875400303178899
Q ss_pred CCCCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2232333---88899999999999849989999999999861799989999999999997428887
Q gi|254780436|r 233 FAINLDP---KKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNE 295 (298)
Q Consensus 233 ~a~~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~ 295 (298)
+++..-. .-+++|||+|.+....|++.-|..+|+-|+.-||++.+|++|||.+...-|++..+
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred HHHHHCCCCCHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 998633686415666640011677034248888888987505852388887689988512763878
No 45
>KOG1156 consensus
Probab=99.39 E-value=2.1e-14 Score=95.04 Aligned_cols=121 Identities=12% Similarity=-0.013 Sum_probs=100.9
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 6632597999989999999723199999999999981-998999999999998168998999999999997298522221
Q gi|254780436|r 12 GCGFLRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPS-MGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALL 90 (298)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 90 (298)
-+++.+..++..+............++|...+-+.+. +.|.+||.+|+.|+.+.|+|-..|.-++..-..+++++....
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred HHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30246618899999877402766551078888887411758999999999983399729999999999999986161888
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 111111111111111211000000011222211111122221
Q gi|254780436|r 91 DFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKI 132 (298)
Q Consensus 91 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 132 (298)
.-.+.++..|.....|...+......+.+..+..........
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899997722453799999999999987788778999999986
No 46
>KOG0553 consensus
Probab=99.38 E-value=8.1e-14 Score=91.86 Aligned_cols=110 Identities=25% Similarity=0.440 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 22111111111222121111111122212222222222211111111222111223233388899999999999849989
Q gi|254780436|r 180 ALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYA 259 (298)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 259 (298)
+......+.+..++..+..++...|.+ .-++..++..+...+.++.|++.+..++.++|.+..+|..+|.+|..+|+++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~n-AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553 88 GNKLMKNKDYQEAVDKYTEAIELDPTN-AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf 899998625999999999998458876-2677789999998601178999999977629089999999879998067379
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999999998617999899999999999974
Q gi|254780436|r 260 NAVKYYKKALSVDSRYYRAKNGILRISQDLS 290 (298)
Q Consensus 260 ~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg 290 (298)
+|++.|+|||+|||++...+.+|..+...++
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9999997643168884899988999998724
No 47
>KOG4648 consensus
Probab=99.38 E-value=1.1e-14 Score=96.60 Aligned_cols=256 Identities=15% Similarity=0.075 Sum_probs=183.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 72319999999999998199899999999999816899899999999999729852222111111111111111121100
Q gi|254780436|r 31 LVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRA 110 (298)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 110 (298)
+......+-+.+..+|+++.|++||+||..++..+|.++..+.||+.+|++++.|..|..+.+.++.++.....++..++
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~ 172 (536)
T KOG4648 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRM 172 (536)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98777888876336764254135666653012457888642005889999888777543028898763288999987777
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000112222111111222211111112222222222211111111111211112222222222222222111111111
Q gi|254780436|r 111 LIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYE 190 (298)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (298)
.....++...+|...+...+.+.|...........+.......-...+..-+..+.. ...........+..+...+.+.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q-~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648 173 QARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQ-GMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHHHH-HHHHHCCCCCCCCHHHHHHCCC
T ss_conf 899987757877777889986085617899999986163654466525788566776-0555304257763132321214
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 22212111111112221222222222221111111122211122323338889999999999984998999999999986
Q gi|254780436|r 191 KSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270 (298)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~ 270 (298)
.+...+........... .+..-...+....++..++..+.+++..+|.........|.+-.-.|...++...++.++.
T Consensus 252 ~~i~~~~~~~A~~~~~~--~L~~~~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~ 329 (536)
T KOG4648 252 VPVVDVVSPRATIDDSN--QLRISDEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVK 329 (536)
T ss_pred CCEEEEECCCCCCCCCC--CCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHEEE
T ss_conf 43267514644468412--3766477899886212247888875078998682236995067887554422734121355
Q ss_pred HCCCCHHHHHHHHHHHHHH
Q ss_conf 1799989999999999997
Q gi|254780436|r 271 VDSRYYRAKNGILRISQDL 289 (298)
Q Consensus 271 l~P~~~~a~~~la~i~~~l 289 (298)
+.|.+..+...+.++-..+
T Consensus 330 ~~P~~~~~~~~~sr~~~~i 348 (536)
T KOG4648 330 VAPAVETPKETETRKDTKI 348 (536)
T ss_pred ECCCCCCCHHHHHHHCCCC
T ss_conf 1456556314554320002
No 48
>KOG2003 consensus
Probab=99.38 E-value=1.1e-14 Score=96.66 Aligned_cols=239 Identities=16% Similarity=0.172 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
Q ss_conf 89999999999981689989999999999972985222211111111111111112110000000112222111111222
Q gi|254780436|r 51 RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTAL 130 (298)
Q Consensus 51 ~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 130 (298)
+..|-..-..++.++.-++.++.+.|.+-+..|++++|.+.|..++.-+.....+.++.|..+...++.++++.++.+..
T Consensus 472 ~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003 472 FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHH
T ss_conf 66778777877420224777750677544415868999999999971742889999971123987447899999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21111111222222222221111111111121111222222222222222211111111122212111111112221222
Q gi|254780436|r 131 KINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDY 210 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (298)
.+..++..+......++. ...+...++..+.......|.++.....++..+...++...+..+........|.+. ..
T Consensus 552 ~il~nn~evl~qianiye--~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ni-e~ 628 (840)
T KOG2003 552 AILLNNAEVLVQIANIYE--LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNI-ET 628 (840)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCH-HH
T ss_conf 999702999999999999--854879999999985015889889999999886103644454566430102367623-79
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 22222222111111112221112232333888999999999998499899999999998617999899999999999974
Q gi|254780436|r 211 YNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLS 290 (298)
Q Consensus 211 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg 290 (298)
..+++..+......+.++.+|+++.-+.|+....-...+.|+...|+|.+|.+.|+..-.--|.+.+.+.-|-++..+||
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003 629 IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 99999888764778999999988873485378999999999875364888999999988758550199999999840026
Q ss_pred HH
Q ss_conf 28
Q gi|254780436|r 291 ST 292 (298)
Q Consensus 291 ~~ 292 (298)
-.
T Consensus 709 l~ 710 (840)
T KOG2003 709 LK 710 (840)
T ss_pred CH
T ss_conf 44
No 49
>KOG4162 consensus
Probab=99.38 E-value=2e-13 Score=89.72 Aligned_cols=253 Identities=14% Similarity=0.147 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 98999999972319-9999999999981998999999999998168-998999999999997298522221111111111
Q gi|254780436|r 22 RGYYSLLSVLVVSV-ILLIEGCSSLFPSMGRRVNIDSLTAVIRAHP-SDPEGYNVRGVVYGMNGDFEKALLDFQSALDLN 99 (298)
Q Consensus 22 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 99 (298)
.+.+.......++. ..+++.+-.+-.+.+...|++...++++.+| .++.+|..++.++...+++.+|+...+-+++-.
T Consensus 464 lqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~ 543 (799)
T KOG4162 464 LQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF 543 (799)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998618998248999999999997699999999999871577648899999999962241677899999999974
Q ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC-------------------------C---CCCCCCC------------
Q ss_conf 11111121100000001122221111112222-------------------------1---1111112------------
Q gi|254780436|r 100 PRYYKVYANRALIRYKMGDVPMAIRDYGTALK-------------------------I---NPDYDVA------------ 139 (298)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-------------------------~---~~~~~~~------------ 139 (298)
|.+.........+....++...+.......+. . .+.....
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred HHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 12220010111012211658888888999999987311676654134566541211437656545303468988999865
Q ss_pred -----------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----------------------------222222222211111111111211112222222222222222111111111
Q gi|254780436|r 140 -----------------------------YIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYE 190 (298)
Q Consensus 140 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (298)
+...+.. ....+....+...........+.....++..+......+...
T Consensus 624 ~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~--~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162 624 LKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADL--FLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 542156101674101578873278999999999999--885388328899999987503133899998648999877468
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 222121111111122212222222222211111111222--111223233388899999999999849989999999999
Q gi|254780436|r 191 KSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALE--DFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKA 268 (298)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kA 268 (298)
++...+..+...+|. ++.....++.++...|+..-+.. ....+++.+|.++++|+++|.++.++|+.++|.++|+-|
T Consensus 702 EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162 702 EAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999998732888-7477899999999718842077899999998608877799999999999746667899999999
Q ss_pred HHHCCCCHH
Q ss_conf 861799989
Q gi|254780436|r 269 LSVDSRYYR 277 (298)
Q Consensus 269 l~l~P~~~~ 277 (298)
+++++.++-
T Consensus 781 ~qLe~S~PV 789 (799)
T KOG4162 781 LQLEESNPV 789 (799)
T ss_pred HHHCCCCCC
T ss_conf 864447986
No 50
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.36 E-value=4.1e-13 Score=88.00 Aligned_cols=95 Identities=25% Similarity=0.433 Sum_probs=62.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 99999998199899999999999816899899999999999729852222111111111111111121100000001122
Q gi|254780436|r 40 EGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDV 119 (298)
Q Consensus 40 ~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 119 (298)
..+..++..+++++|+..|+++++++|+++.+|..+|.+|..+|++++|+..|+++++++|.++..+..++.++...++.
T Consensus 5 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 84 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH
T ss_conf 99999998499999999999999859998999999999999859858999999999986989899999999999994999
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 221111112222111
Q gi|254780436|r 120 PMAIRDYGTALKINP 134 (298)
Q Consensus 120 ~~a~~~~~~~~~~~~ 134 (298)
..|+..+..++...|
T Consensus 85 ~~A~~~~~~al~~~P 99 (100)
T cd00189 85 EEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999997490
No 51
>KOG0495 consensus
Probab=99.34 E-value=8.5e-13 Score=86.30 Aligned_cols=212 Identities=15% Similarity=0.113 Sum_probs=136.8
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999729852222111111111111111121100000001122221111112222111111122222222222111111
Q gi|254780436|r 76 GVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDL 155 (298)
Q Consensus 76 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (298)
+....-+|+.++|+..++.+++..|.....+..+|.++..+++.+.+...+.......|.....+..+.... ...+..
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle--Ek~~~~ 735 (913)
T KOG0495 658 ANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE--EKDGQL 735 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH--HHHCCH
T ss_conf 689998640799999999998848755899999868999987799999999702564889812999997788--872652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111211112222222222222222111111111222121111111122212222222222211111111222111223
Q gi|254780436|r 156 QKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAI 235 (298)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~ 235 (298)
..+...+......+|.+...+..........+....+.....+++...|.... .+. -+...... ..-......++
T Consensus 736 ~rAR~ildrarlkNPk~~~lwle~Ir~ElR~Gn~~~a~~lmakALQecp~sg~-LWa-EaI~le~~---~~rkTks~DAL 810 (913)
T KOG0495 736 VRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL-LWA-EAIWLEPR---PQRKTKSIDAL 810 (913)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH-HHH-HHHHHCCC---CCCCHHHHHHH
T ss_conf 66999988887349986264999999999748899999999999986875222-689-99870467---66521778999
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 23338889999999999984998999999999986179998999999999999742888
Q gi|254780436|r 236 NLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVN 294 (298)
Q Consensus 236 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~ 294 (298)
+....++.++...|..+....++++|.+.|.+|+.++|++.++|...=+.....|+-.+
T Consensus 811 kkce~dphVLlaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed 869 (913)
T KOG0495 811 KKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEED 869 (913)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHH
T ss_conf 85168955399999999988889999999999970288641299999999998377777
No 52
>KOG1127 consensus
Probab=99.32 E-value=8.3e-12 Score=80.93 Aligned_cols=82 Identities=26% Similarity=0.381 Sum_probs=34.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 22222111111112221112232333888999999999998499899999999998617999899999999999974288
Q gi|254780436|r 214 RGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTV 293 (298)
Q Consensus 214 ~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~ 293 (298)
+|..+...++...++..++.++..+|++...|..+|.+|-..|++..|++.|.||..++|.+.-+.+-.+.+..++|...
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 04343685215558999999863890657889987788774376200777642457448276899999999998766689
Q ss_pred HH
Q ss_conf 87
Q gi|254780436|r 294 NE 295 (298)
Q Consensus 294 ~~ 295 (298)
.+
T Consensus 648 ea 649 (1238)
T KOG1127 648 EA 649 (1238)
T ss_pred HH
T ss_conf 99
No 53
>KOG0624 consensus
Probab=99.31 E-value=2.3e-13 Score=89.44 Aligned_cols=228 Identities=22% Similarity=0.326 Sum_probs=150.4
Q ss_pred HCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 16899899999999999729852222111111111111111121100000001122221111112222111111122222
Q gi|254780436|r 64 AHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGR 143 (298)
Q Consensus 64 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (298)
.+|.+++-+..+|..++..|++..|+..|..+++.+|++..+.+..+..+..+|....++..+.+.+...|....+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999889999734677899998888707806699999877777652577400330899986183188888872
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222211111111111211112222222222222---------------222111111111222121111111122212
Q gi|254780436|r 144 GNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYG---------------RALVYQMRGEYEKSIEDFSQAISLYSSISP 208 (298)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (298)
+.... ..+..+.+...+...+...|........ ........++...++......+... +...
T Consensus 113 g~vll--K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624 113 GVVLL--KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred CHHHH--HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCHH
T ss_conf 20355--32528889879999972598730268899887768999999999998843874655999998888537-1336
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH---HHHHHH
Q ss_conf 22222222221111111122211122323338889999999999984998999999999986179998999---999999
Q gi|254780436|r 209 DYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAK---NGILRI 285 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~---~~la~i 285 (298)
..+..++.++...+....|+..+..+.++..++.+.++.+...++..|+.+.++...+.+|++||++...+ ..|-++
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv 269 (504)
T KOG0624 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 89999988888538688888889998740466538889899899766118878999999980695333677889999999
Q ss_pred HHHHHHHHH
Q ss_conf 999742888
Q gi|254780436|r 286 SQDLSSTVN 294 (298)
Q Consensus 286 ~~~lg~~~~ 294 (298)
-+.|.+...
T Consensus 270 ~K~les~e~ 278 (504)
T KOG0624 270 VKSLESAEQ 278 (504)
T ss_pred HHHHHHHHH
T ss_conf 999998999
No 54
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.31 E-value=2e-12 Score=84.32 Aligned_cols=87 Identities=28% Similarity=0.385 Sum_probs=78.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 22222222111111112221112232333888999999999998499899999999998617999899999999999974
Q gi|254780436|r 211 YNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLS 290 (298)
Q Consensus 211 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg 290 (298)
+..+|..+...+++.+|+..+.++++.+|+++.+|..+|.++..+|++++|+.+|+++++++|+++.++.++|.++..+|
T Consensus 3 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 99999999984999999999999998599989999999999998598589999999999869898999999999999949
Q ss_pred HHHHHHC
Q ss_conf 2888743
Q gi|254780436|r 291 STVNEVN 297 (298)
Q Consensus 291 ~~~~~~n 297 (298)
+...++.
T Consensus 83 ~~~~A~~ 89 (100)
T cd00189 83 KYEEALE 89 (100)
T ss_pred CHHHHHH
T ss_conf 9999999
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=9.4e-13 Score=86.07 Aligned_cols=156 Identities=22% Similarity=0.289 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999999999972985222211111111111111112110000000112222111111222211111112222222222
Q gi|254780436|r 69 PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYR 148 (298)
Q Consensus 69 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
..+...+|.-|+..|++..|...++++++.+|+...++..++..+...+..+.+...+.+++.+.|.+.++..+.+..
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F-- 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF-- 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH--
T ss_conf 999999999999778999999889999884952088999999999990775567999999985298864055210699--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21111111111121111222222222222222211111111122212111111112221222222222221111111122
Q gi|254780436|r 149 DERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSAL 228 (298)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 228 (298)
+..++.++++.
T Consensus 113 ---------------------------------------------------------------------LC~qg~~~eA~ 123 (250)
T COG3063 113 ---------------------------------------------------------------------LCAQGRPEEAM 123 (250)
T ss_pred ---------------------------------------------------------------------HHHCCCHHHHH
T ss_conf ---------------------------------------------------------------------97089868999
Q ss_pred CCCCCCCCC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 211122323--3388899999999999849989999999999861799989999999999997428887
Q gi|254780436|r 229 EDFKFAINL--DPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNE 295 (298)
Q Consensus 229 ~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~ 295 (298)
..|.+++.. .+.-+..|-|+|.|-.++|+.+.|.++|+++|++||+++.+...+++...+-|+...+
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH
T ss_conf 999998718887775304544578886437704479999999883757876789987988753130189
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.26 E-value=3.3e-12 Score=83.09 Aligned_cols=273 Identities=9% Similarity=-0.052 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 999989999999-7231999999999999819989999999999981689989-99999999997298522221111111
Q gi|254780436|r 19 SKRRGYYSLLSV-LVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPE-GYNVRGVVYGMNGDFEKALLDFQSAL 96 (298)
Q Consensus 19 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al 96 (298)
.+++........ ......-....+....++++++.+-+.+.+|.+..|+... +-...+......|+++.|....++..
T Consensus 101 ~~AeK~l~k~a~~~~~pllnyL~AArAA~~~g~~~~rd~yL~~A~e~~p~a~lav~lt~Ael~l~~~q~e~Ala~L~~L~ 180 (398)
T PRK10747 101 QQVEKLMAKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITRVRLQLARNENHAARHGVDKLL 180 (398)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999998634356774889999999999888989999999998885898488999999999997799899999999998
Q ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111121100000001122221111112222111111122---22222222211---1111111112111122222
Q gi|254780436|r 97 DLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAY---IGRGNIYRDER---YSDLQKAFADFDRAIQLKT 170 (298)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 170 (298)
+..|.++........++...+++...........+..-...... ........... ....+.-...+........
T Consensus 181 ~~~p~~~~VL~Ll~~~y~~~~dW~aL~~LLp~L~K~~~l~~~e~~~L~~~a~~~ll~~~~~~~~~~~L~~~W~~lp~~~r 260 (398)
T PRK10747 181 EVTPRHPEVLRLAEQAYIRTGAWSSLLDIIPSMAKAHVGDEEHRAMLEQQAWIGLMDQARADNGSEGLRNWWKNQSRKTR 260 (398)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHH
T ss_conf 61999999999999999987459999999999987579999999999999999999998732347999999986899875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22222222222111111111222121111111122212222222222211111111222111223233388899999999
Q gi|254780436|r 171 SDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGM 250 (298)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~ 250 (298)
.++.............+....+.......+....+. ......+. ....+....+...+.-++.+|+++..+..+|.
T Consensus 261 ~~~~l~~~ya~~Li~~g~~~~A~~ll~~~Lkk~wd~--~Lv~ly~~--l~~~d~~~~l~~~e~wlk~~~~~~~Ll~aLGr 336 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIIIDGLKRQYDD--RLVLPIPR--LKTNNPEQLEKVLRQQIKQVGDRPLLWSTLGQ 336 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCH--HHHHHHHH--CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 699999999999986899689999999998618998--99999875--67799899999999987318999899999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998499899999999998617999899999999999974288874
Q gi|254780436|r 251 VYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 251 ~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
++.+.+.+.+|.++|++++++.|+ ++++.-||.++..+|+...+.
T Consensus 337 L~~~~~lwgkA~~yle~sl~l~p~-~~~~~~La~l~e~lg~~~~A~ 381 (398)
T PRK10747 337 SLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred HHHHHCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHH
T ss_conf 999735099999999999865999-999999999999859979999
No 57
>KOG1174 consensus
Probab=99.24 E-value=8e-13 Score=86.44 Aligned_cols=244 Identities=16% Similarity=0.091 Sum_probs=156.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 99899999999999816899899999999999729852222111111111111111121100000001122221111112
Q gi|254780436|r 49 MGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGT 128 (298)
Q Consensus 49 ~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 128 (298)
..+.-+..++-+-...-|++...+..+|.++...|++.+|+.-|+++.-++|.........+.++...++.+.-......
T Consensus 212 hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~ 291 (564)
T KOG1174 212 HSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDY 291 (564)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 30366588878765406760889988755653416756899999887507815555689999999860487678999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22211111112222222222211111111111211112222222222222222111111111222121111111122212
Q gi|254780436|r 129 ALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISP 208 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (298)
...........+...+.... ...+...+.....+.+..++.....+...+......+....+...+..+....|. ..
T Consensus 292 Lf~~~~~ta~~wfV~~~~l~--~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL 368 (564)
T KOG1174 292 LFAKVKYTASHWFVHAQLLY--DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RL 368 (564)
T ss_pred HHHHCCCCCCCEEEEEEHHH--HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCHH-HH
T ss_conf 98522023240234310145--7766899999998876158553367886139988545628899999998742514-57
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 22222222221111111122211122323338889999999--9999849989999999999861799989999999999
Q gi|254780436|r 209 DYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGG--MVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRIS 286 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg--~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~ 286 (298)
..+..+..+|...+.+.+|......++..-|.++.++.-+| .++..----++|.+.+++++.++|.+..|...++.+.
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174 369 EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 89988999999614089999999999997653144676630001156850679999999842035886089999999999
Q ss_pred HHHHHHHHH
Q ss_conf 997428887
Q gi|254780436|r 287 QDLSSTVNE 295 (298)
Q Consensus 287 ~~lg~~~~~ 295 (298)
..-|.+.+.
T Consensus 449 ~~Eg~~~D~ 457 (564)
T KOG1174 449 QVEGPTKDI 457 (564)
T ss_pred HHHCCCCCH
T ss_conf 862765418
No 58
>PRK11788 hypothetical protein; Provisional
Probab=99.23 E-value=3.2e-12 Score=83.14 Aligned_cols=265 Identities=15% Similarity=0.042 Sum_probs=212.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHCCCCCCCC
Q ss_conf 597999989999999723199999999999981-998999999999998168998-----99999999999729852222
Q gi|254780436|r 16 LRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPS-MGRRVNIDSLTAVIRAHPSDP-----EGYNVRGVVYGMNGDFEKAL 89 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ai~~~~~al~~~P~~~-----~~~~~lg~~~~~~g~~~~A~ 89 (298)
-+++++.+.+..+....+..+.+.-..+.+|+. |..+.||..=+..+ ..|+-+ .++..+|.-|++.|-++.|.
T Consensus 49 ~q~dkAid~f~~~~~~~~~t~e~hlaLG~LfRrrGE~dRAIriHq~Ll-~rp~L~~~~r~~a~~ELa~Dy~~aGllDRAE 127 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLL-SRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 894599999999986481149999999999996560889999999997-2879899999999999999998677499999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1111111111111111211000000011222211111122221111111222222---2222211111111111211112
Q gi|254780436|r 90 LDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRG---NIYRDERYSDLQKAFADFDRAI 166 (298)
Q Consensus 90 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 166 (298)
..|.+.++..+....+...+..++...+++..|+..................... ........++...+.....+++
T Consensus 128 ~~f~~l~~~~~~~~~al~~Ll~iye~~~dW~~Ai~~a~~L~~~~~~~~~~~iAhy~CElA~~~~~~~~~~~A~~~L~kAL 207 (389)
T PRK11788 128 ELFLQLVDEDDFAEGALRQLLTIYQQEKDWQKAIEVAERLEKLGGDSLRKEIAHFYCELAQQALARGDLDAARALLKKAL 207 (389)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999982854269999999999998645999999999998704765069999999999999987489999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 22222222222222211111111122212111111112221222222222221111111122211122323338889999
Q gi|254780436|r 167 QLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWF 246 (298)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~ 246 (298)
..+|.........+......+++..++..+.......|...+.....+..++...++..+....+.......|. +.+..
T Consensus 208 ~~dp~cvRA~lllg~l~~~~g~~~~Ai~~l~~i~~q~p~~l~~vl~~L~~~y~~l~~~~~~~~~L~~~~~~~~~-~~l~l 286 (389)
T PRK11788 208 AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLPEVLPKLMECYQALGDEAEGLEFLRRAVEEYPG-ADLLL 286 (389)
T ss_pred HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHH
T ss_conf 74824341899999999987999999999999997395779999999999999828888999999999985899-35999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 999999984998999999999986179998999999
Q gi|254780436|r 247 NGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGI 282 (298)
Q Consensus 247 ~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~l 282 (298)
.++......+..++|...+.+.++..|+......-+
T Consensus 287 ~l~~~l~~~~g~~~A~~~l~~~L~~~Psl~g~~~Ll 322 (389)
T PRK11788 287 ALAQLLEEREGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 999999976999999999999975299889999999
No 59
>KOG1840 consensus
Probab=99.15 E-value=3e-11 Score=77.93 Aligned_cols=244 Identities=19% Similarity=0.170 Sum_probs=146.1
Q ss_pred HCCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHH
Q ss_conf 325979999899999997--------231999999999999-819989999999999981--------689989999999
Q gi|254780436|r 14 GFLRSSKRRGYYSLLSVL--------VVSVILLIEGCSSLF-PSMGRRVNIDSLTAVIRA--------HPSDPEGYNVRG 76 (298)
Q Consensus 14 ~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~Ai~~~~~al~~--------~P~~~~~~~~lg 76 (298)
...+.+++...+..+... .+.+......++.++ ..+++.+|+..|++|+.+ +|..+.++.++|
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred HHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 85207789999999999998703766689999999999999974428999999999999999853898789999998899
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999729852222111111111111--------11112110000000112222111111222211111112222222222
Q gi|254780436|r 77 VVYGMNGDFEKALLDFQSALDLNPR--------YYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYR 148 (298)
Q Consensus 77 ~~~~~~g~~~~A~~~~~~al~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
.+|...|+|.+|..++++++++... -...+...+.++..++.++.+...+.....+.....
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~----------- 359 (508)
T KOG1840 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP----------- 359 (508)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC-----------
T ss_conf 998604775778999999999999850368589999998999999885205689999999999998614-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCCCCCCCCCC
Q ss_conf 211111111111211112222222222222222111111111222121111111122-------2122222222222111
Q gi|254780436|r 149 DERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSS-------ISPDYYNGRGISYLAT 221 (298)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 221 (298)
-..++........++..+...+.+.++...+..++..... ........++..+...
T Consensus 360 -----------------g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~ 422 (508)
T KOG1840 360 -----------------GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL 422 (508)
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -----------------641057898998999999994465679999999999988615676714547899999999983
Q ss_pred CCCCCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHH
Q ss_conf 111112221112232-------33388899999999999849989999999999861--------79998999999999
Q gi|254780436|r 222 KNYDSALEDFKFAIN-------LDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSV--------DSRYYRAKNGILRI 285 (298)
Q Consensus 222 ~~~~~a~~~~~~a~~-------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l--------~P~~~~a~~~la~i 285 (298)
+.+.++...|..+.. .+|+....+.|||.+|..+|++++|++.-++++.. +|........++.+
T Consensus 423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (508)
T KOG1840 423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLADL 501 (508)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 4602289999999889998588997468999889999997356888999999998999970788885212467640677
No 60
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=2.5e-11 Score=78.37 Aligned_cols=216 Identities=18% Similarity=0.182 Sum_probs=139.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCHHHCCCCC
Q ss_conf 999819989999999999981689989999999999972985222211111111111111-----112110000000112
Q gi|254780436|r 44 SLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYY-----KVYANRALIRYKMGD 118 (298)
Q Consensus 44 ~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~~~~ 118 (298)
.+.-..+-++|++.|-..++.+|+..++...+|..|.+.|..+.||...+..++ .|+.. .+...+|.-+...|-
T Consensus 44 NfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 44 NFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 898616963699999999835815678988988898863508899999998852-8998668999999999899998564
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22211111122221111111222222222221111111111121111222222222222222211111111122212111
Q gi|254780436|r 119 VPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQ 198 (298)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (298)
.+.|...+............+...+ ...+....++.+++....+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqL------------------------------------l~IYQ~treW~KAIe~A~~ 166 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQL------------------------------------LNIYQATREWEKAIDVAER 166 (389)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_conf 6689999999734634328999999------------------------------------9999983689999999999
Q ss_pred CCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 111112----2212222222222211111111222111223233388899999999999849989999999999861799
Q gi|254780436|r 199 AISLYS----SISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR 274 (298)
Q Consensus 199 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~ 274 (298)
.....+ .....++..++.......+.+.|...+.++++.+|+++.+-..+|.++...|+|+.|++.++.+++-||.
T Consensus 167 L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~~Qn~~ 246 (389)
T COG2956 167 LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHH
T ss_conf 99718852125899999999999740311899999999998628200103545438887526669999999999984957
Q ss_pred CH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 98-99999999999974288874
Q gi|254780436|r 275 YY-RAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 275 ~~-~a~~~la~i~~~lg~~~~~~ 296 (298)
+. ++...|..+|..+|..-+..
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~ 269 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGL 269 (389)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 79999999999999947877899
No 61
>KOG1156 consensus
Probab=99.03 E-value=3.5e-11 Score=77.57 Aligned_cols=253 Identities=16% Similarity=0.172 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 31999999999999819989999999999981689989999999999972985222211111111111111112110000
Q gi|254780436|r 33 VSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALI 112 (298)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (298)
+....++..+...|..++|...+...+++++..|++++.+..+|..+..+|+.++|......++..++.....|..+|.+
T Consensus 5 ~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156 5 PKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 67779999999998877888689999999873776422578604323024661889999987740276655107888888
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00011222211111122221111111222222222221111111111121111222222222222222211111111122
Q gi|254780436|r 113 RYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKS 192 (298)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (298)
+....++.+++.++..++...+++...+..+... +.+..+...............+.....+..........+.+..+
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL--Q~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A 162 (700)
T KOG1156 85 QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL--QIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMA 162 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7411758999999999983399729999999999--99998616188889999772245379999999999998778877
Q ss_pred CCCCCCCCCCCC--CCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 212111111112--221-----2222222222211111111222111223233388899999999999849989999999
Q gi|254780436|r 193 IEDFSQAISLYS--SIS-----PDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYY 265 (298)
Q Consensus 193 ~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 265 (298)
............ +.. ..............+..+.+.+....--...-+.....-..|..++++|+.++|+..|
T Consensus 163 ~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156 163 LEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999862049988889999998999999997246889999998520677777788642888999874187689999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9998617999899999999999
Q gi|254780436|r 266 KKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 266 ~kAl~l~P~~~~a~~~la~i~~ 287 (298)
..-+..+|++..-+.++-.++.
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156 243 RRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9998629336789999999999
No 62
>KOG0543 consensus
Probab=99.02 E-value=4.3e-10 Score=71.62 Aligned_cols=115 Identities=20% Similarity=0.342 Sum_probs=90.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 222111111111222121111111122--------------212222222222211111111222111223233388899
Q gi|254780436|r 179 RALVYQMRGEYEKSIEDFSQAISLYSS--------------ISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF 244 (298)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~ 244 (298)
.+..+...+.+..+...+.++...... .....+.+++.++.+++.+..|+..+.+++..+|+|+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KA 293 (397)
T KOG0543 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKA 293 (397)
T ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 51588751219999999999998751134699789999988887776479988874121889999999988458996267
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998499899999999998617999899999999999974288
Q gi|254780436|r 245 WFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTV 293 (298)
Q Consensus 245 ~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~ 293 (298)
+|.+|.++..+|+++.|+.+|++|++++|+|..+...|..+.+..-...
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~ 342 (397)
T KOG0543 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYE 342 (397)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7787889886420989999999999748886899999999999999999
No 63
>KOG1130 consensus
Probab=98.97 E-value=2.5e-10 Score=72.88 Aligned_cols=262 Identities=20% Similarity=0.248 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCCCCCCCCCCCCCCC------CCCCCC
Q ss_conf 999999999999819989999999999981689989----9999999999729852222111111111------111111
Q gi|254780436|r 35 VILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPE----GYNVRGVVYGMNGDFEKALLDFQSALDL------NPRYYK 104 (298)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~~~~ 104 (298)
...+-..+..+.+.+++..-+..|+.|++.-.++.. .|..+|.+|+-+++|++|+++...-+.+ .-....
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCC
T ss_conf 99999878788751462456899999998361278899999997411444676399997642235779987444201220
Q ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCC------------------CCCCCC
Q ss_conf 1211000000011222211111122221111------1112222222222211111------------------111111
Q gi|254780436|r 105 VYANRALIRYKMGDVPMAIRDYGTALKINPD------YDVAYIGRGNIYRDERYSD------------------LQKAFA 160 (298)
Q Consensus 105 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~------------------~~~~~~ 160 (298)
..-++|..+...|.+.+|+.+..+.+..... ...++++++..|....... ...+..
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~ 176 (639)
T KOG1130 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVK 176 (639)
T ss_pred CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHH
T ss_conf 04552014563023206889999886799997477766577741111122126415888814306554788999999999
Q ss_pred CCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21111222------2222222222222111111111222121111111122-----212222222222211111111222
Q gi|254780436|r 161 DFDRAIQL------KTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSS-----ISPDYYNGRGISYLATKNYDSALE 229 (298)
Q Consensus 161 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~ 229 (298)
.+..-+.. .......+..++..++..+.+..++......+.+... ..-..+..++.++...++++.|++
T Consensus 177 fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~e 256 (639)
T KOG1130 177 FYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIE 256 (639)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHH
T ss_conf 99998999987446776331102457635650457999999999999999863188887764043103555304276999
Q ss_pred CCCCCCCC----C--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 11122323----3--38889999999999984998999999999986179998999999999999742888743
Q gi|254780436|r 230 DFKFAINL----D--PKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVN 297 (298)
Q Consensus 230 ~~~~a~~~----~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~n 297 (298)
+|+.++.+ . ...+...|.+|.+|.-+.++++||.++.+-+.|-..- .-+.+-++.+.+||+.++++.
T Consensus 257 hYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL-~DriGe~RacwSLgna~~alg 329 (639)
T KOG1130 257 HYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL-EDRIGELRACWSLGNAFNALG 329 (639)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999963136888989876448999999999999999999999998-876414899999878887642
No 64
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.97 E-value=3.3e-10 Score=72.22 Aligned_cols=261 Identities=12% Similarity=0.032 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 31999999999999819989999999999981689989999999999972985222211111111111111112110000
Q gi|254780436|r 33 VSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALI 112 (298)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (298)
.....+...+.++-..++|..|++.|+++++..|+++..+..++.+....|++++|+....+.....|+... +..++.+
T Consensus 97 lp~~~l~~~Aka~Rn~kq~~~Al~ly~~~~~~~P~n~d~~lGlalt~Ada~~~~~Al~~~~~~~~~~p~~~~-~~~~aY~ 175 (818)
T PRK10049 97 LPARGLAAAARAYRNLKQWQNSLTLWQKALSLEPQNKDYQSGQILTLADAGHYDEALVKAKQLVAGAPDVAN-LLALAYI 175 (818)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH-HHHHHHH
T ss_conf 997999999999863554677999999985029999407899999998638869999999998762897678-9999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------------------------------
Q ss_conf 0001122221111112222111111122222222222-------------------------------------------
Q gi|254780436|r 113 RYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRD------------------------------------------- 149 (298)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 149 (298)
+...+....++.....++...|.+.............
T Consensus 176 ~~~~~~~~~aL~~~~~al~~~P~~~~~~~~y~~al~~~~i~~pA~~l~~~~p~l~~~~~~~~le~~~Aa~~vr~a~~~~~ 255 (818)
T PRK10049 176 YRLAGRHYDALRAMTEALRRAPSSQEVLTEYVQALQRNRIAAPALRLAKENPALDDAELTRQLEADAAAELVRLAFLPTR 255 (818)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98627429999999999976899989999999999866997189997652822078778878888899999762123342
Q ss_pred --------------------------------------------CCCCCCCCCCCCCCCCCCCC-CCCCCCCCC------
Q ss_conf --------------------------------------------11111111111211112222-222222222------
Q gi|254780436|r 150 --------------------------------------------ERYSDLQKAFADFDRAIQLK-TSDGRAWYG------ 178 (298)
Q Consensus 150 --------------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------ 178 (298)
.........+..+....... +-.......
T Consensus 256 s~~er~~~ad~AL~~y~~L~~~~~~~p~a~~~y~rar~Drl~aL~~r~r~~~vi~eYq~L~a~~~~~P~Ya~~avadayL 335 (818)
T PRK10049 256 SESERYAIADRALAQYDALLTLWHKDPDAQADYQRARIDRLGALLVRDRYADVISEYQRLKAEGQKIPDYARRWVASAYL 335 (818)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 10244778999999899999860579853678999999999999987659999999999974689885799999999998
Q ss_pred ---------------------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------------CCCC
Q ss_conf ---------------------------------22211111111122212111111112221--------------2222
Q gi|254780436|r 179 ---------------------------------RALVYQMRGEYEKSIEDFSQAISLYSSIS--------------PDYY 211 (298)
Q Consensus 179 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 211 (298)
+...+....++.++...........|... ....
T Consensus 336 ~~~qP~kA~~iy~~l~~~~~~~~~~~~~e~~~~LfYA~~e~e~~~eA~~l~~~~~~~~p~~~~~~g~~~~~PNddy~~~~ 415 (818)
T PRK10049 336 DRRQPEKAAPILTELFYHPETIAPDLSDEELADLFYSLLESEQYPGALQVAVHTIETTPYFVRLYGLPTSIPNDDWLQGQ 415 (818)
T ss_pred HCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
T ss_conf 63996899999999973485457653567887789998611118999999998653289604306888898882799999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 22222221111111122211122323338889999999999984998999999999986179998999999999999742
Q gi|254780436|r 212 NGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSS 291 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~ 291 (298)
...+......++...|...++.....-|.|......+|.++.-.|....|...+++|..++|.+..+..+.+.+..++++
T Consensus 416 ~l~a~~~~~~ndL~~Ae~~le~l~~~APgN~~L~~~~A~v~r~Rg~pr~Ae~~~~~a~~l~P~~~~~~~~qa~~aldl~e 495 (818)
T PRK10049 416 SLLVQSLKASNDLPQAEKRLEELAYTAPGNQGLRIDYASVYQARGWPRAAENELKAAESLEPRSLNLEVAQAWTALTLQE 495 (818)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999757849999999999863999879999999999854995999999999870086427999889999886556
Q ss_pred HHH
Q ss_conf 888
Q gi|254780436|r 292 TVN 294 (298)
Q Consensus 292 ~~~ 294 (298)
.-.
T Consensus 496 wrq 498 (818)
T PRK10049 496 WRQ 498 (818)
T ss_pred HHH
T ss_conf 877
No 65
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.95 E-value=5.4e-10 Score=71.09 Aligned_cols=255 Identities=11% Similarity=0.011 Sum_probs=155.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 98663259799998999999972319--9999999999981998999999999998168998999999999997298522
Q gi|254780436|r 10 KFGCGFLRSSKRRGYYSLLSVLVVSV--ILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEK 87 (298)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 87 (298)
+-........++..|...+....+.. .+....+.....++++++|+..+++..+..|+++.++..+..+|..+|+++.
T Consensus 126 rAA~~~g~~~~rd~yL~~A~e~~p~a~lav~lt~Ael~l~~~q~e~Ala~L~~L~~~~p~~~~VL~Ll~~~y~~~~dW~a 205 (398)
T PRK10747 126 EAAQQRGDEARANQHLERAAELAGNDTIPVEITRVRLQLARNENHAARHGVDKLLEVTPRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99998889899999999988858984889999999999977998999999999986199999999999999998745999
Q ss_pred CCCCCCCCCCC---CCCCCCCCCCCCH---HHCCCCC-CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22111111111---1111111211000---0000112-2221111112222-1111111222222222221111111111
Q gi|254780436|r 88 ALLDFQSALDL---NPRYYKVYANRAL---IRYKMGD-VPMAIRDYGTALK-INPDYDVAYIGRGNIYRDERYSDLQKAF 159 (298)
Q Consensus 88 A~~~~~~al~~---~~~~~~~~~~~~~---~~~~~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (298)
-+......-+. .+.........+. ......+ ...+...+-..+. ....++.. ....+......+....+.
T Consensus 206 L~~LLp~L~K~~~l~~~e~~~L~~~a~~~ll~~~~~~~~~~~L~~~W~~lp~~~r~~~~l--~~~ya~~Li~~g~~~~A~ 283 (398)
T PRK10747 206 LLDIIPSMAKAHVGDEEHRAMLEQQAWIGLMDQARADNGSEGLRNWWKNQSRKTRHQVAL--QVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHCCHHH--HHHHHHHHHHCCCHHHHH
T ss_conf 999999998757999999999999999999999873234799999998689987569999--999999998689968999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12111122222222222222221111111112221211111111222122222222222111111112221112232333
Q gi|254780436|r 160 ADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDP 239 (298)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p 239 (298)
......+...++...... .+.. ...+..........- ....+.++.....+|..+...+.+.+|..+++.+++..|
T Consensus 284 ~ll~~~Lkk~wd~~Lv~l-y~~l--~~~d~~~~l~~~e~w-lk~~~~~~~Ll~aLGrL~~~~~lwgkA~~yle~sl~l~p 359 (398)
T PRK10747 284 QIIIDGLKRQYDDRLVLP-IPRL--KTNNPEQLEKVLRQQ-IKQVGDRPLLWSTLGQSLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHHHHCCCHHHHHH-HHHC--CCCCHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCC
T ss_conf 999999861899899999-8756--779989999999998-731899989999999999973509999999999986599
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88899999999999849989999999999861
Q gi|254780436|r 240 KKASFWFNGGMVYEMQGSYANAVKYYKKALSV 271 (298)
Q Consensus 240 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l 271 (298)
+ ++.|..+|.++.++|+.++|.++|++++.+
T Consensus 360 ~-~~~~~~La~l~e~lg~~~~A~~~yr~gL~l 390 (398)
T PRK10747 360 D-AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9-999999999999859979999999999998
No 66
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.91 E-value=2.1e-10 Score=73.31 Aligned_cols=76 Identities=20% Similarity=0.158 Sum_probs=64.7
Q ss_pred HHCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 9819989999999999981689---989999999999972985222211111111111111112110000000112222
Q gi|254780436|r 46 FPSMGRRVNIDSLTAVIRAHPS---DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPM 121 (298)
Q Consensus 46 ~~~~~~~~Ai~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
-..|++.+|++.|.+|+++.++ ...+++|+|.+|...|++++|+++|.+|++++|+.+.++.++|.++...|....
T Consensus 42 Qs~GeyaEALe~Y~eAL~Le~D~~Drs~iLYNIGlIy~~nGe~~kALeyY~qALeiNP~~pqA~NNlGvIyh~qG~~a~ 120 (165)
T CHL00033 42 QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAI 120 (165)
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 0135389999999986234568512668998999999985888899999999998599968999789999999879999
No 67
>KOG0543 consensus
Probab=98.91 E-value=1.6e-09 Score=68.47 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 222222211111111222111223233388---------------89999999999984998999999999986179998
Q gi|254780436|r 212 NGRGISYLATKNYDSALEDFKFAINLDPKK---------------ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYY 276 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~ 276 (298)
...|..+++.+++..|...|.+++..-... ..++.|++.|+.++++|.+|+..+.++|+++|+|.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 77515887512199999999999987511346997899999888877764799888741218899999999884589962
Q ss_pred HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999742888743
Q gi|254780436|r 277 RAKNGILRISQDLSSTVNEVN 297 (298)
Q Consensus 277 ~a~~~la~i~~~lg~~~~~~n 297 (298)
.|++..|+++..+|....+.+
T Consensus 292 KALyRrG~A~l~~~e~~~A~~ 312 (397)
T KOG0543 292 KALYRRGQALLALGEYDLARD 312 (397)
T ss_pred HHHHHHHHHHHHHCCHHHHHH
T ss_conf 677787889886420989999
No 68
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.90 E-value=2e-09 Score=68.03 Aligned_cols=258 Identities=11% Similarity=-0.022 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 319999999999998199899999999999816899-8999999999997298522221111111111111111211000
Q gi|254780436|r 33 VSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSD-PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRAL 111 (298)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 111 (298)
.....+.-.+....+.+++..+=....++-+.-|+. -.....++.+....|+++.|.....+.++..|.++........
T Consensus 116 ~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r 195 (400)
T COG3071 116 QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALR 195 (400)
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 40899999999988630577898999998625899408899999999986788656898899998728688699999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00001122221111112222111111122222---2222221111111111---12111122222222222222221111
Q gi|254780436|r 112 IRYKMGDVPMAIRDYGTALKINPDYDVAYIGR---GNIYRDERYSDLQKAF---ADFDRAIQLKTSDGRAWYGRALVYQM 185 (298)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (298)
++...+.+...........+..-........+ ..........+..... ..+......-..++.........+..
T Consensus 196 ~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 196 AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHHHHH
T ss_conf 99985118999998899987357882999999999999999987362001478999986649760583489999999997
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 11111222121111111122212222222222211111111222111223233388899999999999849989999999
Q gi|254780436|r 186 RGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYY 265 (298)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 265 (298)
.+....+...........-... .....-....++...-++..++.+..+|+++..+..+|..+.+.+.|.+|-++|
T Consensus 276 l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~l 351 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEAL 351 (400)
T ss_pred CCCHHHHHHHHHHHHHHCCCHH----HHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5876889999999987445856----999886518899367999999999839998149999999999841789999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999861799989999999999997428887
Q gi|254780436|r 266 KKALSVDSRYYRAKNGILRISQDLSSTVNE 295 (298)
Q Consensus 266 ~kAl~l~P~~~~a~~~la~i~~~lg~~~~~ 295 (298)
+.|++..|. ...+.-+|.++..+|.+..+
T Consensus 352 eaAl~~~~s-~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 352 EAALKLRPS-ASDYAELADALDQLGEPEEA 380 (400)
T ss_pred HHHHHCCCC-HHHHHHHHHHHHHCCCHHHH
T ss_conf 999725897-43699999999981886889
No 69
>KOG1128 consensus
Probab=98.87 E-value=1.5e-10 Score=74.16 Aligned_cols=109 Identities=16% Similarity=0.271 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 11111222121111111122212222222222211111111222111223233388899999999999849989999999
Q gi|254780436|r 186 RGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYY 265 (298)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 265 (298)
..++..+...+.......+. ....++..|.+....+++..+.+.|..++..+|++.++|+|++.+|..+|+..+|...+
T Consensus 498 ~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l 576 (777)
T KOG1128 498 NKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKL 576 (777)
T ss_pred CCCHHHHHHHHHHHHHCCCC-CHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 21289999999987650663-25578741489998763678999999896248882055523668999975148889999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999861799989999999999997428887
Q gi|254780436|r 266 KKALSVDSRYYRAKNGILRISQDLSSTVNE 295 (298)
Q Consensus 266 ~kAl~l~P~~~~a~~~la~i~~~lg~~~~~ 295 (298)
++|++-+-.+...|.|--.+..++|...++
T Consensus 577 ~EAlKcn~~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128 577 KEALKCNYQHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred HHHHHCCCCCCEEEECHHHHHHHCCCHHHH
T ss_conf 998614778873220312345531408999
No 70
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.84 E-value=1.1e-09 Score=69.50 Aligned_cols=212 Identities=18% Similarity=0.228 Sum_probs=132.2
Q ss_pred HHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 99998-19989999999999981689989999999999972985222211111111111111112110000000112222
Q gi|254780436|r 43 SSLFP-SMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPM 121 (298)
Q Consensus 43 ~~~~~-~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
+.++. .|-+.-|--+|++++.++|.-+.+++.+|.-+..-|+|+.|.+.|+..++++|....++.++|......+++.-
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCCEEEEECCCCHH
T ss_conf 20342240799986014566634967589998999999860220579998666710477510777604402344475155
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111122221111111222222222221111111111121111222222222222222211111111122212111111
Q gi|254780436|r 122 AIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAIS 201 (298)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (298)
|...+.+.-..+|+++.....+. ......+...+.................+... ....++.... .......
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLY---l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV---~~yLgkiS~e--~l~~~~~ 223 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLY---LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIV---EFYLGKISEE--TLMERLK 223 (297)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH---HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHH---HHHHHHCCHH--HHHHHHH
T ss_conf 59999999844989807899999---87610786899999999987056765518799---9997040399--9999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----CHH
Q ss_conf 1122212222222222211111111222111223233388899999999999849989999999999861799----989
Q gi|254780436|r 202 LYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR----YYR 277 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~----~~~ 277 (298)
....+. ...-..-.+.++.+|.-+..+|+.++|...|+-|+.-+-- +.-
T Consensus 224 a~a~~n---------------------------~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~Ry 276 (297)
T COG4785 224 ADATDN---------------------------TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRY 276 (297)
T ss_pred HHHHHH---------------------------HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 631212---------------------------89999999999999999861311788999999999887999999999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999997
Q gi|254780436|r 278 AKNGILRISQDL 289 (298)
Q Consensus 278 a~~~la~i~~~l 289 (298)
|...|+++.++.
T Consensus 277 A~~EL~~l~q~~ 288 (297)
T COG4785 277 ALLELSLLGQDQ 288 (297)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999842311
No 71
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.84 E-value=2.1e-09 Score=67.89 Aligned_cols=192 Identities=18% Similarity=0.093 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---C
Q ss_conf 3199999999999981998999999999998168998---999999999997298522221111111111111111---2
Q gi|254780436|r 33 VSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDP---EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKV---Y 106 (298)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~ 106 (298)
.+...+...+...+..++|.+|+..|+++....|..+ .+...+|.++...|+|.+|+..+++-++..|+++.. .
T Consensus 31 ~~~~~lY~~a~~~~~~~~y~~A~~~fe~l~~~yp~s~~a~~A~l~~a~a~y~~~~y~~A~~~~~~Fi~~yP~~~~~~ya~ 110 (235)
T TIGR03302 31 RPAEELYNEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 89999999999999878999999999999986899313799999999999976439999999999999887743499999
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11000000011222211111122221111111222222222221111111111121111222222222222222211111
Q gi|254780436|r 107 ANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMR 186 (298)
Q Consensus 107 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (298)
+..|.++...... . .........+...+...+...|.......
T Consensus 111 y~~a~s~~~~~~~--------------------------~--~rDq~~~~~A~~~f~~~i~~yP~S~ya~d--------- 153 (235)
T TIGR03302 111 YLRGLSNYKQIDD--------------------------S--DRDQTAAREAFEAFQELIRRYPNSEYAPD--------- 153 (235)
T ss_pred HHHHHHHHHHCCC--------------------------C--CCCHHHHHHHHHHHHHHHHHCCCCHHHHH---------
T ss_conf 9987998873665--------------------------4--45808999999999999988899657999---------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 1111222121111111122212222222222211111111222111223233388---8999999999998499899999
Q gi|254780436|r 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKK---ASFWFNGGMVYEMQGSYANAVK 263 (298)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~ 263 (298)
+.... ..... .....-...|..+...+.+..|+..++.+++..|+. +++++.++.+|..+|..++|.+
T Consensus 154 -----A~~~i---~~l~~-~LA~~e~~ia~~Y~k~~~y~aAi~r~~~vl~~Yp~t~~~~eAl~~l~eay~~lg~~~~A~~ 224 (235)
T TIGR03302 154 -----AKKRM---DYLRN-RLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLALGLTDLAQD 224 (235)
T ss_pred -----HHHHH---HHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf -----99999---99999-9999999999999984170999999999998689985139999999999998699899999
Q ss_pred HHHHHHH
Q ss_conf 9999986
Q gi|254780436|r 264 YYKKALS 270 (298)
Q Consensus 264 ~~~kAl~ 270 (298)
..+..-.
T Consensus 225 ~~~~l~~ 231 (235)
T TIGR03302 225 AAAVLGA 231 (235)
T ss_pred HHHHHHH
T ss_conf 9999975
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.84 E-value=1.8e-09 Score=68.30 Aligned_cols=95 Identities=26% Similarity=0.411 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHCC----CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999998168----99899999999999729852222111111111111111121100000001122221111112
Q gi|254780436|r 53 VNIDSLTAVIRAHP----SDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGT 128 (298)
Q Consensus 53 ~Ai~~~~~al~~~P----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 128 (298)
-.|.-+++.+.... ..+..++.||.+|-++|-..-|.-+|.+++.++|+.+.++..+|..+...++++.|.+.+..
T Consensus 45 v~laRl~qlL~~~~Lt~e~rA~l~yeRGvlyDSlGLr~LAR~DF~qAL~l~P~~adayN~LGiy~tq~~~fD~AyEAFDs 124 (297)
T PRK11189 45 VILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQEGEFDAAYEAFDS 124 (297)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999974345898999999998314776412099998649989753998589999999999997119999999877
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 2221111111222222222
Q gi|254780436|r 129 ALKINPDYDVAYIGRGNIY 147 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~ 147 (298)
.++++|....+..+++...
T Consensus 125 ~LEL~P~y~YA~lNRGIAl 143 (297)
T PRK11189 125 VLELDPTYDYAYLNRGIAL 143 (297)
T ss_pred HHHCCCCCHHHHHHHHHHH
T ss_conf 7726987348998302788
No 73
>KOG3060 consensus
Probab=98.81 E-value=4.5e-08 Score=60.65 Aligned_cols=180 Identities=15% Similarity=0.242 Sum_probs=118.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 99998199899999999999816899899999999999729852222111111111111111121100000001122221
Q gi|254780436|r 43 SSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMA 122 (298)
Q Consensus 43 ~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (298)
.+....+...-|-.++++.-...|+........|..+...|.+++|+++|+..++-+|++...+.....+...+|+..
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l-- 137 (289)
T KOG3060 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL-- 137 (289)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCH--
T ss_conf 999983313789999999998678970679899999998613545999999984468631489999999999718857--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111222211111112222222222211111111111211112222222222222222111111111222121111111
Q gi|254780436|r 123 IRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISL 202 (298)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (298)
.++.........
T Consensus 138 --------------------------------------------------------------------~aIk~ln~YL~~ 149 (289)
T KOG3060 138 --------------------------------------------------------------------EAIKELNEYLDK 149 (289)
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
T ss_conf --------------------------------------------------------------------999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 122212222222222211111111222111223233388899999999999849---98999999999986179998999
Q gi|254780436|r 203 YSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQG---SYANAVKYYKKALSVDSRYYRAK 279 (298)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~kAl~l~P~~~~a~ 279 (298)
.. .+.+.+..++..+...+++..|.-+++..+-..|.++..+-.+|.+++-+| ++.-|.++|.+|++++|.+..++
T Consensus 150 F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060 150 FM-NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 35-76999999999997676899999999999975987189999999999998418889999999999987274738999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999974288
Q gi|254780436|r 280 NGILRISQDLSSTV 293 (298)
Q Consensus 280 ~~la~i~~~lg~~~ 293 (298)
.++-..-..+-++.
T Consensus 229 ~GI~lc~~~la~~s 242 (289)
T KOG3060 229 FGIYLCGSALAQIS 242 (289)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999899999875
No 74
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.79 E-value=2.7e-09 Score=67.26 Aligned_cols=102 Identities=19% Similarity=0.146 Sum_probs=61.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 99999998199899999999999816899899999999999729852222111111111111111121100000001122
Q gi|254780436|r 40 EGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDV 119 (298)
Q Consensus 40 ~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 119 (298)
..+...++.+++.+|+..+.++...+|+++++|..+|.+|.+.|+++.|-..|.+++++.|..+....+++..+...++.
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH
T ss_conf 99999998045688999999984369997466667789999736756778999999984258844666589999972779
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2211111122221111111222
Q gi|254780436|r 120 PMAIRDYGTALKINPDYDVAYI 141 (298)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~ 141 (298)
..+...+.......+.+..+..
T Consensus 185 ~~A~~lll~a~l~~~ad~~v~~ 206 (257)
T COG5010 185 EDAETLLLPAYLSPAADSRVRQ 206 (257)
T ss_pred HHHHHHHHHHHHCCCCCHHHHH
T ss_conf 8999999999867887638999
No 75
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=5.3e-09 Score=65.71 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 12221211111111222122222222222111111112221112232333888999999999998499899999999998
Q gi|254780436|r 190 EKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKAL 269 (298)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl 269 (298)
..+...+.+.....|+ +...+..+|.++...|+++.|...+.+++++.|+++.+..|+|..+.-.|+++.|...+..+.
T Consensus 117 ~~A~~~~rkA~~l~p~-d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 117 GEAVSVLRKAARLAPT-DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 8899999998436999-746666778999973675677899999998425884466658999997277989999999998
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6179998999999999999742888
Q gi|254780436|r 270 SVDSRYYRAKNGILRISQDLSSTVN 294 (298)
Q Consensus 270 ~l~P~~~~a~~~la~i~~~lg~~~~ 294 (298)
..-|.+..+..||+.+....|++-.
T Consensus 196 l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 196 LSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HCCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 6788763899989999840488677
No 76
>KOG2376 consensus
Probab=98.73 E-value=1.1e-09 Score=69.46 Aligned_cols=89 Identities=12% Similarity=0.149 Sum_probs=35.7
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 99999999981998999999999998168998999999999997298522221111111111111111211000000011
Q gi|254780436|r 38 LIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117 (298)
Q Consensus 38 ~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 117 (298)
++.........+.|++|+....+++...|++..+....-.+....++|++|+...++-......+ ...+..+.+.+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrln 93 (652)
T KOG2376 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC-HHHHHHHHHHHHCC
T ss_conf 99999873353379999999988872589947668666764203667999999998511143111-13578888998705
Q ss_pred CCCCCCCCCC
Q ss_conf 2222111111
Q gi|254780436|r 118 DVPMAIRDYG 127 (298)
Q Consensus 118 ~~~~a~~~~~ 127 (298)
..+++...+.
T Consensus 94 k~Dealk~~~ 103 (652)
T KOG2376 94 KLDEALKTLK 103 (652)
T ss_pred CHHHHHHHHH
T ss_conf 6788999875
No 77
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=9.2e-08 Score=58.97 Aligned_cols=125 Identities=21% Similarity=0.272 Sum_probs=104.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 22222222222111111111222121111111122212222222222211111111222111223233388899999999
Q gi|254780436|r 171 SDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGM 250 (298)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~ 250 (298)
......+.........++...+...+...+...|. +.......+.++...++..+|.+.+++++..+|+.+..+.++|.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 65377888999999832701578999999984899-87999999999987588677999999998408985079999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998499899999999998617999899999999999974288874
Q gi|254780436|r 251 VYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 251 ~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
+|.+.|++.+|+..++..+.-+|+++..|.-|++.+..+|+...+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 9995699789999999986448777369999999999847617799
No 78
>PRK12370 invasion protein regulator; Provisional
Probab=98.71 E-value=1.6e-09 Score=68.55 Aligned_cols=180 Identities=13% Similarity=0.007 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC
Q ss_conf 89999999999981689989999999999972985---------222211111111111111112110000000112222
Q gi|254780436|r 51 RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDF---------EKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPM 121 (298)
Q Consensus 51 ~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~---------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
...|+..|++++.++|+++.+|..++.||+.+... ..|...-+++++++|.++.+...+|.+....++...
T Consensus 277 n~~A~~LF~~Av~~dP~fA~AyA~la~cy~q~a~l~~~d~~~~~~~A~~~AeravEldp~dp~a~~~lg~~~~L~~d~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 99999999998733977446678789999976340368828899999999999874387887888999999872355224
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111122221111111222222222221111111111121111222222222222222211111111122212111111
Q gi|254780436|r 122 AIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAIS 201 (298)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (298)
+...++++..++|+.....+..+... ...+...++.......+..+|....................+++........
T Consensus 357 a~~~f~rA~~L~Pnsa~~~Y~~~W~~--~maGr~~ea~~~i~~a~~LdP~~~~~~~~~l~~~~~~~~~d~a~~l~~~~~~ 434 (553)
T PRK12370 357 GSLLFKQANLLSPISADIKYYYGWNL--FMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 47999876425998425799999999--9758689999999998835986520279999999984231079999998625
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1122212222222222211111111222111
Q gi|254780436|r 202 LYSSISPDYYNGRGISYLATKNYDSALEDFK 232 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 232 (298)
..+...+-.....+....-+|+.++|.....
T Consensus 435 q~~~~~~~~~s~~~m~~~~~g~~~~a~~~~~ 465 (553)
T PRK12370 435 QHLQDNPILLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 0778783699999999973383899999998
No 79
>pfam04733 Coatomer_E Coatomer epsilon subunit. This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.
Probab=98.68 E-value=6e-09 Score=65.43 Aligned_cols=244 Identities=8% Similarity=-0.030 Sum_probs=129.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 999999819989999999999981689989-9999999999729852222111111111111111121100000001122
Q gi|254780436|r 41 GCSSLFPSMGRRVNIDSLTAVIRAHPSDPE-GYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDV 119 (298)
Q Consensus 41 ~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 119 (298)
.+...|-.|+|+.+|...+ ....+|++.. .-..+.++|..+|+++..+......- .|... +...++.........
T Consensus 7 ~irn~Fy~G~Yq~~i~ea~-~~~~s~~~~~e~~~~~~Ra~IAlg~~~~vl~ei~~~~--~p~L~-av~~lA~y~~~~~~~ 82 (290)
T pfam04733 7 NVRNYFYLGNYQKAINESD-VTSLSEEALVERDVYMYRSYLALGSYQIVISEIKESA--ATPLQ-AVRLLAEYLNSPSRK 82 (290)
T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCC--CCHHH-HHHHHHHHHCCCCCH
T ss_conf 8999999669999999986-3689913579999999999997377037888626789--83179-999999987484114
Q ss_pred CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2211111122221--11111122222222222111111111112111122222222222222221111111112221211
Q gi|254780436|r 120 PMAIRDYGTALKI--NPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFS 197 (298)
Q Consensus 120 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (298)
..+.......+.. .+.+.......+.++. ..++...+...... ............++........+.....
T Consensus 83 ~~~~~~l~~~~~~~~~~~~~~~~~~aati~~--~~g~~e~AL~~l~~-----~~~lE~~al~VQi~L~~nR~DLA~ke~~ 155 (290)
T pfam04733 83 ESILASLKEWVADSHIGSNSTLRLLAAIIFI--HEGDFDDALKHLHK-----GENLEAMALNVQILLKMHRIDLAEQQLK 155 (290)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 5699999999874015667899999999999--77999999999855-----8966799999999997288367999999
Q ss_pred CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 11111122212222222222--2111111112221112232333888999999999998499899999999998617999
Q gi|254780436|r 198 QAISLYSSISPDYYNGRGIS--YLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~ 275 (298)
....... ...-.....+.+ ......+.+|...|+......+..+..++.++.|+..+|+|++|...+.+|++.+|++
T Consensus 156 ~~q~~~e-Ds~l~qLa~awv~l~~Ggek~q~A~yif~EL~~~~~~t~lllng~Av~~m~~~~~~eAe~~L~eAl~~d~~d 234 (290)
T pfam04733 156 KMQQIDE-DATLTQLANAWVKLAVGGEKIQDAYYIFQEFSEKYDSTPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKD 234 (290)
T ss_pred HHHHCCC-CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 9884351-059999999999997264778989999999985228978999999999987478799999999998728898
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999974288874
Q gi|254780436|r 276 YRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 276 ~~a~~~la~i~~~lg~~~~~~ 296 (298)
++...|+..+-..+|+..+..
T Consensus 235 ~dtlaNliv~s~~~gK~~e~~ 255 (290)
T pfam04733 235 PETLINLVVCALHLGKPAEVS 255 (290)
T ss_pred HHHHHHHHHHHHHHCCCHHHH
T ss_conf 899999999999809987899
No 80
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD; InterPro: IPR005415 The type III secretion system of Gram-negative bacteria is used to transport virulence factors from the pathogen directly into the host cell and is only triggered when the bacterium comes into close contact with the host. Effector proteins secreted by the type III system do not possess a secretion signal, and are considered unique because of this. Yersinia spp. secrete effector proteins called YopB and YopD that facilitate the spread of other translocated proteins through the type III needle and the host cell cytoplasm . Both are believed to act as pore translocases, forming apertures in the host cell membrane and allowing the bacterium easy access to its cytoplasm. YopD also acts as a negative regulator of the Yersinia low-calcium response, and in turn is controlled by a chaperone, SycD . This protein also regulates YopB secretion. SycD is located on the Yop pathogenicity island of Yersinia spp., and is speculated to prevent a premature interaction between YopB, YopD and the calcium-response LcrV protein . It has been speculated that a type III secretion mechanism also exists in Chlamydial species. With the sequencing of the Chlamydia trachomatis genome, several proteins similar to characterised type III proteins have emerged, including a SycD homologue . The Pseudomonas aeruginosa gene PcrH is also similar to the Yersinia chaperone, suggesting a comparable function. Proteins in this entry are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system ,. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role . In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent . ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array .; GO: 0006950 response to stress.
Probab=98.68 E-value=1.8e-08 Score=62.83 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 99999999999981998999999999998168998999999999997298522221111111111111111211000000
Q gi|254780436|r 35 VILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 (298)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (298)
...+...+-..+.+|+|.+|...|.-..-.||.+...+..||.|...+|+|++|+..|..+..++|++|..++..+.++.
T Consensus 18 L~~~Y~~AY~~y~~G~Y~~A~~~F~~L~~~~~~~~~Y~~gLa~c~q~~~~Y~~A~~~Y~~a~~l~~~~P~p~~~~a~C~l 97 (137)
T TIGR02552 18 LEAIYALAYNLYQQGRYDEALKLFQLLAAYDPWNADYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYYHAAECYL 97 (137)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99999999999853667999999999999743036899999999998616789999999997527686951269989998
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 01122221111112222111-1111
Q gi|254780436|r 115 KMGDVPMAIRDYGTALKINP-DYDV 138 (298)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~-~~~~ 138 (298)
.+++...|...+..++.... .+..
T Consensus 98 ~~g~~~~A~~aL~~a~~~~~~~~~~ 122 (137)
T TIGR02552 98 ALGEPESALKALDLAIEIAGGENPE 122 (137)
T ss_pred HHCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 7289789999999999984889963
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD; InterPro: IPR005415 The type III secretion system of Gram-negative bacteria is used to transport virulence factors from the pathogen directly into the host cell and is only triggered when the bacterium comes into close contact with the host. Effector proteins secreted by the type III system do not possess a secretion signal, and are considered unique because of this. Yersinia spp. secrete effector proteins called YopB and YopD that facilitate the spread of other translocated proteins through the type III needle and the host cell cytoplasm . Both are believed to act as pore translocases, forming apertures in the host cell membrane and allowing the bacterium easy access to its cytoplasm. YopD also acts as a negative regulator of the Yersinia low-calcium response, and in turn is controlled by a chaperone, SycD . This protein also regulates YopB secretion. SycD is located on the Yop pathogenicity island of Yersinia spp., and is speculated to prevent a premature interaction between YopB, YopD and the calcium-response LcrV protein . It has been speculated that a type III secretion mechanism also exists in Chlamydial species. With the sequencing of the Chlamydia trachomatis genome, several proteins similar to characterised type III proteins have emerged, including a SycD homologue . The Pseudomonas aeruginosa gene PcrH is also similar to the Yersinia chaperone, suggesting a comparable function. Proteins in this entry are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system ,. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role . In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent . ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array .; GO: 0006950 response to stress.
Probab=98.66 E-value=1e-08 Score=64.18 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=56.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 22222222211111111222111223233388899999999999849989999999999861799989999999999997
Q gi|254780436|r 210 YYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDL 289 (298)
Q Consensus 210 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~l 289 (298)
..+..+......|++.+|...|.-....+|.+...|..||.|+..+|+|++|+..|..|..++|++|.+....|.++..+
T Consensus 20 ~~Y~~AY~~y~~G~Y~~A~~~F~~L~~~~~~~~~Y~~gLa~c~q~~~~Y~~A~~~Y~~a~~l~~~~P~p~~~~a~C~l~~ 99 (137)
T TIGR02552 20 AIYALAYNLYQQGRYDEALKLFQLLAAYDPWNADYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYYHAAECYLAL 99 (137)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999985366799999999999974303689999999999861678999999999752768695126998999872
Q ss_pred HHHHHHH
Q ss_conf 4288874
Q gi|254780436|r 290 SSTVNEV 296 (298)
Q Consensus 290 g~~~~~~ 296 (298)
|+..++.
T Consensus 100 g~~~~A~ 106 (137)
T TIGR02552 100 GEPESAL 106 (137)
T ss_pred CCHHHHH
T ss_conf 8978999
No 82
>KOG1128 consensus
Probab=98.66 E-value=1.2e-08 Score=63.79 Aligned_cols=84 Identities=15% Similarity=0.252 Sum_probs=65.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 22222221111111122211122323338889999999999984998999999999986179998999999999999742
Q gi|254780436|r 212 NGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSS 291 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~ 291 (298)
...+......+++.++..+++..++++|-....|+++|.+..++++++.|.++|.+++.++|++.++|+|++..+..+|.
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~ 568 (777)
T KOG1128 489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK 568 (777)
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 75254333521289999999987650663255787414899987636789999998962488820555236689999751
Q ss_pred HHHH
Q ss_conf 8887
Q gi|254780436|r 292 TVNE 295 (298)
Q Consensus 292 ~~~~ 295 (298)
...+
T Consensus 569 k~ra 572 (777)
T KOG1128 569 KKRA 572 (777)
T ss_pred HHHH
T ss_conf 4888
No 83
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.62 E-value=9.4e-09 Score=64.35 Aligned_cols=236 Identities=14% Similarity=0.031 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHCCCCCCCC
Q ss_conf 597999989999999723199999999999981-998999999999998168998-----99999999999729852222
Q gi|254780436|r 16 LRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPS-MGRRVNIDSLTAVIRAHPSDP-----EGYNVRGVVYGMNGDFEKAL 89 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Ai~~~~~al~~~P~~~-----~~~~~lg~~~~~~g~~~~A~ 89 (298)
-+|+|+.+.+.-+....+....+.-..+.+|+. |.-+.||. ..+++-..|+.. .+...+|.-|+..|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIR-iHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIR-IHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 696369999999983581567898898889886350889999-9998852899866899999999989999856466899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111111111112110000000112222111111222211111112222222222211111111111211112222
Q gi|254780436|r 90 LDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLK 169 (298)
Q Consensus 90 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (298)
..|....+....-..+...+..++....++.+|+....+.....+...........+.
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAIe~A~~L~k~~~q~~~~eIAqfyCE---------------------- 185 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE---------------------- 185 (389)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----------------------
T ss_conf 9999973463432899999999999836899999999999971885212589999999----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-HHHHHHH
Q ss_conf 222222222222111111111222121111111122212222222222211111111222111223233388-8999999
Q gi|254780436|r 170 TSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKK-ASFWFNG 248 (298)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~-~~~~~~l 248 (298)
+........+...+.....++...++. .......+|.+....|++..|++.+..+++.+|.. +++.-.|
T Consensus 186 ---------LAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~~Qn~~yl~evl~~L 255 (389)
T COG2956 186 ---------LAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf ---------999974031189999999999862820-0103545438887526669999999999984957799999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999984998999999999986179998999999999
Q gi|254780436|r 249 GMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRI 285 (298)
Q Consensus 249 g~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i 285 (298)
-.||.++|+.++.+..+.++.+..|+-. +..-++.+
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~l 291 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADL 291 (389)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
T ss_conf 9999994787789999999986447851-99999999
No 84
>KOG0376 consensus
Probab=98.60 E-value=3.1e-09 Score=66.97 Aligned_cols=109 Identities=21% Similarity=0.234 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC
Q ss_conf 99999999998199899999999999816899899999999999729852222111111111111111121100000001
Q gi|254780436|r 37 LLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKM 116 (298)
Q Consensus 37 ~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 116 (298)
.+-..+...+....+..|+..|.+||+++|+++..+.+|+.++.+.++|..|+.++.++++.+|....++...|......
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHHHEEECHHHHHHHHHHHHHHCCCHHHHEEEECCHHHHHH
T ss_conf 41467765412001999999999998528863244230212343200033677877763540801233034311778757
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12222111111222211111112222222
Q gi|254780436|r 117 GDVPMAIRDYGTALKINPDYDVAYIGRGN 145 (298)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 145 (298)
+.+.++...+.......|+..........
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376 86 GEFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 77999999998766238676889987899
No 85
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.4e-07 Score=56.70 Aligned_cols=131 Identities=18% Similarity=0.172 Sum_probs=100.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCC
Q ss_conf 111112111122222222222222221111111112221211111111222122222222222111---11111222111
Q gi|254780436|r 156 QKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLAT---KNYDSALEDFK 232 (298)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~~~~ 232 (298)
...+...+..+..+|.+...+..++..+...+....+...+..+....+++ +.....++..+..+ ....++...+.
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n-~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN-PEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 999999999998498872449999999998444347999999998737998-8999999999999538844499999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 2232333888999999999998499899999999998617999899999999999
Q gi|254780436|r 233 FAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 233 ~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~ 287 (298)
+++..+|.+..+.+.+|..++..|+|.+|+..+++-++..|.+..-..-+.+...
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9984397328899999999998145999999999998518999823789999999
No 86
>KOG4234 consensus
Probab=98.59 E-value=1.6e-08 Score=63.17 Aligned_cols=107 Identities=26% Similarity=0.394 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 22111111111222121111111122212----22222222221111111122211122323338889999999999984
Q gi|254780436|r 180 ALVYQMRGEYEKSIEDFSQAISLYSSISP----DYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQ 255 (298)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~ 255 (298)
+..++..+.+..+...+..++...|+... -.+...+.+...++.+..++..+.+++++.|.+..++..++.+|.++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 77765134077899999999986866308889999720588998756689899998765750840679999999998855
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9989999999999861799989999999999
Q gi|254780436|r 256 GSYANAVKYYKKALSVDSRYYRAKNGILRIS 286 (298)
Q Consensus 256 g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~ 286 (298)
.++++|+++|++.++++|...+|+...+++-
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl~ 212 (271)
T KOG4234 182 EKYEEALEDYKKILESDPSRREAREAIARLP 212 (271)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 5178889999999871820689999998527
No 87
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=6e-09 Score=65.42 Aligned_cols=125 Identities=24% Similarity=0.327 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 98999999999998168998999999999997298522221111111111111111211000000011222211111122
Q gi|254780436|r 50 GRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTA 129 (298)
Q Consensus 50 ~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 129 (298)
.-++.+..++.-++.+|++++.|..+|.+|...|+|+.|+..|++++++.|+++......+.......+.
T Consensus 62 ~~e~~~~~L~~rL~~~Pdd~~gW~~LGr~y~~~~~~~~A~~Ay~kA~~L~p~~~~il~~yA~aL~~~~~~---------- 131 (206)
T PRK10370 62 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNAYDNALLAYRQALQLRGENAELYAALATVLYYQAGQ---------- 131 (206)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC----------
T ss_conf 1799999999999839988899999999999768989999999999975799878999999999987598----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22111111122222222222111111111112111122222222222222221111111112221211111111222122
Q gi|254780436|r 130 LKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPD 209 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (298)
T Consensus 132 -------------------------------------------------------------------------------- 131 (206)
T PRK10370 132 -------------------------------------------------------------------------------- 131 (206)
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 2222222221111111122211122323338889999999999984998999999999986179998
Q gi|254780436|r 210 YYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYY 276 (298)
Q Consensus 210 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~ 276 (298)
....++...+++++..+|++..++.-+|...+..|+|.+||.++++.++..|-+.
T Consensus 132 ------------~~t~~~~~lL~~AL~lDp~~~~AL~Lla~~AFe~~dY~~AI~~Wq~lL~~~~p~~ 186 (206)
T PRK10370 132 ------------HMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKLLDLNSPRV 186 (206)
T ss_pred ------------CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
T ss_conf ------------7768999999999874989788999999999982649999999999984579998
No 88
>PRK12370 invasion protein regulator; Provisional
Probab=98.55 E-value=2.3e-08 Score=62.27 Aligned_cols=254 Identities=12% Similarity=0.077 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCC---------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999899999997231999999999999-8199---------89999999999981689989999999999972985222
Q gi|254780436|r 19 SKRRGYYSLLSVLVVSVILLIEGCSSLF-PSMG---------RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKA 88 (298)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 88 (298)
..+...+.....+.++....+-.....+ +... ...|.....++++++|.+|.+...+|.++.-.|+.+-|
T Consensus 278 ~~A~~LF~~Av~~dP~fA~AyA~la~cy~q~a~l~~~d~~~~~~~A~~~AeravEldp~dp~a~~~lg~~~~L~~d~~~a 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999987339774466787899999763403688288999999999998743878878889999998723552244
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21111111111111111211000000011222211111122221111111222222222221111111111121111222
Q gi|254780436|r 89 LLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQL 168 (298)
Q Consensus 89 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (298)
...|+++..++|+....++..+..+...|+..++....+.++..+|...........+.... ...+.++.........
T Consensus 358 ~~~f~rA~~L~Pnsa~~~Y~~~W~~~maGr~~ea~~~i~~a~~LdP~~~~~~~~~l~~~~~~--~~~d~a~~l~~~~~~q 435 (553)
T PRK12370 358 SLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYH--TGIDDAIRLGDELRSQ 435 (553)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--CCCCHHHHHHHHHHCC
T ss_conf 79998764259984257999999999758689999999998835986520279999999984--2310799999986250
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC---CCCCCC-H
Q ss_conf 222222222-2222111111111222121111111122212222222222211111-111222111223---233388-8
Q gi|254780436|r 169 KTSDGRAWY-GRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKN-YDSALEDFKFAI---NLDPKK-A 242 (298)
Q Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~a~---~~~p~~-~ 242 (298)
.+.+..... ..+......++.+.+....... ........-..+.+...+...+. ....+..|-.-+ +.+|.- +
T Consensus 436 ~~~~~~~~~s~~~m~~~~~g~~~~a~~~~~~~-~~~~~~~~~~vn~~y~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lp 514 (553)
T PRK12370 436 HLQDNPILLSMQVMFLSLKGKHELARKLTKEI-STQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNPGLLP 514 (553)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-CHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 77878369999999997338389999999851-80311473245589999986005332689999976565214775011
Q ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf --999999999998499899999999998617999
Q gi|254780436|r 243 --SFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 (298)
Q Consensus 243 --~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~ 275 (298)
-+.+..+......|+++.--..+-++..-||.-
T Consensus 515 l~~~~~g~~~~~~~~~~~~~~~~~w~~~~~~dprl 549 (553)
T PRK12370 515 LVLVAHGEAIAEKMWNKFKNEDNIWFKRWKQDPRL 549 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 24765146689999998651004889887319433
No 89
>KOG4648 consensus
Probab=98.53 E-value=5.3e-08 Score=60.27 Aligned_cols=216 Identities=16% Similarity=0.078 Sum_probs=143.6
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999972985222211111111111111112110000000112222111111222211111112222222222211
Q gi|254780436|r 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDER 151 (298)
Q Consensus 72 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (298)
.-.+|.-|+++|+|++||.+|.+++...|.++..+.+++..+.....+..|...+..++.++.....++...+.... .
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~--~ 177 (536)
T KOG4648 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARE--S 177 (536)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_conf 88763367642541356666530124578886420058899998887775430288987632889999877778999--8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 111111111211112222222222222222111--111111222121111111122212222222222211111111222
Q gi|254780436|r 152 YSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQ--MRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALE 229 (298)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 229 (298)
.+...++.......+...|.............. ...-...+...+..+. ......-..-..|..+...+.+..++.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~--Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~ 255 (536)
T KOG4648 178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPAR--QGMIQILPIKKPGYKFSKKAMRSVPVV 255 (536)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHHH--HHHHHHCCCCCCCCHHHHHHCCCCCEE
T ss_conf 775787777788998608561789999998616365446652578856677--605553042577631323212144326
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 111223233388899999999999849989999999999861799989999999999997428
Q gi|254780436|r 230 DFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSST 292 (298)
Q Consensus 230 ~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~ 292 (298)
++..-+..+..+.....+ +..+.+..++++|+....+++-++|.+..+..+.+....-+|.+
T Consensus 256 ~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~ 317 (536)
T KOG4648 256 DVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTS 317 (536)
T ss_pred EEECCCCCCCCCCCCCCC-HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 751464446841237664-77899886212247888875078998682236995067887554
No 90
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.53 E-value=8.9e-08 Score=59.06 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=78.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCH
Q ss_conf 9999999998199899999999999816899---8999999999997298522221111111111111---111211000
Q gi|254780436|r 38 LIEGCSSLFPSMGRRVNIDSLTAVIRAHPSD---PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY---YKVYANRAL 111 (298)
Q Consensus 38 ~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~ 111 (298)
....+..+++.|+|..|++.|+.-++..|+. +.+++.||.+|+..|++++|+..|..++.-.|+. ++.+..+|.
T Consensus 5 ~y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKlg~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 89999999853887899999999988687987671054799999999733999999999998645899860689999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0000112222111111222211111112
Q gi|254780436|r 112 IRYKMGDVPMAIRDYGTALKINPDYDVA 139 (298)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (298)
+...+++...|...+..++...|.....
T Consensus 85 ~~~~~g~~~~A~~~l~~V~~~YP~s~aA 112 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCHHH
T ss_conf 9987289889999999998566998788
No 91
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=98.52 E-value=4e-08 Score=60.92 Aligned_cols=85 Identities=20% Similarity=0.222 Sum_probs=64.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHH
Q ss_conf 222222211111111222111223233388---8999999999998499899999999998617999---8999999999
Q gi|254780436|r 212 NGRGISYLATKNYDSALEDFKFAINLDPKK---ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY---YRAKNGILRI 285 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~la~i 285 (298)
...+...+..|++..|+..|..-++..|++ +.++|.||.+|+.+|++++|+..|..+++-.|++ ++|+..||.+
T Consensus 6 y~aa~~~lk~gdY~~A~~~F~~F~~~YP~S~y~pnA~YWLGe~~y~~~~~~~A~~~f~~v~~~yp~s~KaPdALLKlg~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 99999998538878999999999886879876710547999999997339999999999986458998606899999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99974288874
Q gi|254780436|r 286 SQDLSSTVNEV 296 (298)
Q Consensus 286 ~~~lg~~~~~~ 296 (298)
+..+|+...+.
T Consensus 86 ~~~~g~~~~A~ 96 (119)
T TIGR02795 86 LQELGDKEKAK 96 (119)
T ss_pred HHHHCCHHHHH
T ss_conf 98728988999
No 92
>KOG4234 consensus
Probab=98.48 E-value=5.2e-08 Score=60.34 Aligned_cols=106 Identities=25% Similarity=0.265 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999999819989999999999981689989-----999999999972985222211111111111111112110
Q gi|254780436|r 35 VILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPE-----GYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANR 109 (298)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (298)
+..+-..+..+|..+.|++|...|..||+.-|..+. .|.++|.++.+++.++.||....++++++|+...+...+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR 174 (271)
T KOG4234 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR 174 (271)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 88898877776513407789999999998686630888999972058899875668989999876575084067999999
Q ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0000001122221111112222111111122
Q gi|254780436|r 110 ALIRYKMGDVPMAIRDYGTALKINPDYDVAY 140 (298)
Q Consensus 110 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 140 (298)
+..+..+..++.++..+.+.+..+|....+.
T Consensus 175 Aeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234 175 AEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 9998855517888999999987182068999
No 93
>KOG4340 consensus
Probab=98.46 E-value=7.4e-08 Score=59.50 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=52.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC
Q ss_conf 99998199899999999999816899899999999999729852222111111111111111121100000001122221
Q gi|254780436|r 43 SSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMA 122 (298)
Q Consensus 43 ~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a 122 (298)
.++.+...|..+|+++..-.+.+|.+--.+..+|.||....+|..|-.+|++.-...|.........+..++..+.+..+
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99998766788999998887439600678889999999999998888999999863718888999999999970352889
Q ss_pred CCCCC
Q ss_conf 11111
Q gi|254780436|r 123 IRDYG 127 (298)
Q Consensus 123 ~~~~~ 127 (298)
.....
T Consensus 98 LrV~~ 102 (459)
T KOG4340 98 LRVAF 102 (459)
T ss_pred HHHHH
T ss_conf 99999
No 94
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=9.8e-07 Score=53.39 Aligned_cols=125 Identities=16% Similarity=0.110 Sum_probs=57.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11112222222222222222111111111222121111111122212222222222211111111222111223233388
Q gi|254780436|r 162 FDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKK 241 (298)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~ 241 (298)
+...+...|.+.......+..+...++..++...+.+.....|.. ......++..+...++..+++..++..+..+|++
T Consensus 329 l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 329 LQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 999998489987999999999987588677999999998408985-0799999999995699789999999986448777
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 8999999999998499899999999998617999899999999999
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~ 287 (298)
+..|..+|.+|..+|+..+|...+-....+.-+...|..-+-+..+
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 3699999999998476177999999999867887899999999998
No 95
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.43 E-value=4.6e-07 Score=55.16 Aligned_cols=119 Identities=10% Similarity=-0.057 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC---CCCCCCCCCCC
Q ss_conf 998999999972319999999999998-19989999999999981689989999999999972985---22221111111
Q gi|254780436|r 21 RRGYYSLLSVLVVSVILLIEGCSSLFP-SMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDF---EKALLDFQSAL 96 (298)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al 96 (298)
...-+.......++....|...+..+. .+++++|+.+|.+++++.|+++.++...+.+.+..++- .++...+++++
T Consensus 66 ~~~~L~~rL~~~Pdd~~gW~~LGr~y~~~~~~~~A~~Ay~kA~~L~p~~~~il~~yA~aL~~~~~~~~t~~~~~lL~~AL 145 (206)
T PRK10370 66 QLQALQDKIRANPQNSEQWALLGEYYLWRNAYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL 145 (206)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999999983998889999999999976898999999999997579987899999999998759877689999999998
Q ss_pred CCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1111111112110000000112222111111222211111112
Q gi|254780436|r 97 DLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVA 139 (298)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 139 (298)
+++|.+..+...+|...+..+++..|+..+.+.+...+.....
T Consensus 146 ~lDp~~~~AL~Lla~~AFe~~dY~~AI~~Wq~lL~~~~p~~~R 188 (206)
T PRK10370 146 ALDANEVTALMLLASDAFMQADYAQAIELWQKLLDLNSPRVNR 188 (206)
T ss_pred HHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCH
T ss_conf 7498978899999999998264999999999998457999889
No 96
>PRK10803 hypothetical protein; Provisional
Probab=98.41 E-value=9.9e-08 Score=58.82 Aligned_cols=100 Identities=21% Similarity=0.238 Sum_probs=76.9
Q ss_pred CCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCHHH
Q ss_conf 11111222121111111122--212222222222211111111222111223233388---8999999999998499899
Q gi|254780436|r 186 RGEYEKSIEDFSQAISLYSS--ISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKK---ASFWFNGGMVYEMQGSYAN 260 (298)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~ 260 (298)
.+++..++..+...+...|. ..+..++++|.+++..+++.+|+..|...+...|++ +++++.+|.++..+|+.++
T Consensus 155 ~k~y~~Ai~aF~~Fi~~yP~s~y~~nA~YWLGe~~y~~~~~~~A~~~F~~vv~~yP~s~K~pdAllklg~~~~~lg~~~~ 234 (262)
T PRK10803 155 KSRQDDAIVAFQNFIKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 234 (262)
T ss_pred HCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 35699999999999987879987743099999999974378999999999998677998678999999999998599999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 9999999986179998999999999
Q gi|254780436|r 261 AVKYYKKALSVDSRYYRAKNGILRI 285 (298)
Q Consensus 261 A~~~~~kAl~l~P~~~~a~~~la~i 285 (298)
|...|++.++..|+...|...-.++
T Consensus 235 Ak~~l~~vi~~YP~S~aA~lAk~~L 259 (262)
T PRK10803 235 AKAVYQQVIKKYPGTDGAKQAQKRL 259 (262)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999999885998999999998
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.38 E-value=2.9e-07 Score=56.28 Aligned_cols=252 Identities=14% Similarity=0.065 Sum_probs=155.0
Q ss_pred HHHCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 66325979999899999997--2319999999999998199899999999999816899899999999999729852222
Q gi|254780436|r 12 GCGFLRSSKRRGYYSLLSVL--VVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKAL 89 (298)
Q Consensus 12 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 89 (298)
.......+++..+...+... ..........+..+..++++..|.....++++..|.+++++...-.+|...|++....
T Consensus 128 A~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll 207 (400)
T COG3071 128 AQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALL 207 (400)
T ss_pred HHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHH
T ss_conf 88630577898999998625899408899999999986788656898899998728688699999999999851189999
Q ss_pred CCCCCCCCCCCCCCCC---CCC---CCHHHCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1111111111111111---211---0000000112222111---111222211111112222222222211111111111
Q gi|254780436|r 90 LDFQSALDLNPRYYKV---YAN---RALIRYKMGDVPMAIR---DYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFA 160 (298)
Q Consensus 90 ~~~~~al~~~~~~~~~---~~~---~~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (298)
....+.-+..--.... +.. .+.+.... ....+.. .+...-.....++..... ........+....+..
T Consensus 208 ~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~-~~~~~~gL~~~W~~~pr~lr~~p~l~~~--~a~~li~l~~~~~A~~ 284 (400)
T COG3071 208 AILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR-DDNGSEGLKTWWKNQPRKLRNDPELVVA--YAERLIRLGDHDEAQE 284 (400)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHCCHHHHCCHHHHHH--HHHHHHHCCCHHHHHH
T ss_conf 988999873578829999999999999999873-6200147899998664976058348999--9999997587688999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21111222222222222222211111111122212111111112221222222222221111111122211122323338
Q gi|254780436|r 161 DFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~ 240 (298)
..........+.... ...-....++...............+ ..+..+..+|..+...+.+.+|...++.++...|.
T Consensus 285 ~i~~~Lk~~~D~~L~---~~~~~l~~~d~~~l~k~~e~~l~~h~-~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 285 IIEDALKRQWDPRLC---RLIPRLRPGDPEPLIKAAEKWLKQHP-EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HHHHHHHHCCCHHHH---HHHHHCCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999998744585699---98865188993679999999998399-98149999999999841789999999999725897
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 8899999999999849989999999999861
Q gi|254780436|r 241 KASFWFNGGMVYEMQGSYANAVKYYKKALSV 271 (298)
Q Consensus 241 ~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l 271 (298)
+..|..+|.++.++|+..+|-+.+++++-+
T Consensus 361 -~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 361 -ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf -436999999999818868899999999987
No 98
>KOG4642 consensus
Probab=98.37 E-value=7.2e-08 Score=59.54 Aligned_cols=99 Identities=20% Similarity=0.116 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 19999999999998199899999999999816899899999999999729852222111111111111111121100000
Q gi|254780436|r 34 SVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIR 113 (298)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 113 (298)
....+.+.+..+|....|..||.+|.++|.++|..+..|.+++.+|+++.+++....+-.+++++.|+....++.+|...
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHHCCCCCCCHHHHCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 79999852460253011146899999988548973024454788888762002666617889860728789999988888
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 0011222211111122221
Q gi|254780436|r 114 YKMGDVPMAIRDYGTALKI 132 (298)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~ 132 (298)
.....+..++..+..+...
T Consensus 89 l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642 89 LQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHCCCCHHHHHHHHHHHH
T ss_conf 7523660789999999988
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.31 E-value=3.7e-07 Score=55.72 Aligned_cols=183 Identities=16% Similarity=0.103 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9989999999999972985222211111111111111---1121100000001122221111112222111111122222
Q gi|254780436|r 67 SDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYY---KVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGR 143 (298)
Q Consensus 67 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (298)
..+..++..|..++..|+|.+|+..|++.....|... .+...++.++...+++..|...+...+...|.+.......
T Consensus 31 ~~~~~lY~~a~~~~~~~~y~~A~~~fe~l~~~yp~s~~a~~A~l~~a~a~y~~~~y~~A~~~~~~Fi~~yP~~~~~~ya~ 110 (235)
T TIGR03302 31 RPAEELYNEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 89999999999999878999999999999986899313799999999999976439999999999999887743499999
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---22222211111111111211112222222222222222111111111222121111111122212222222222211
Q gi|254780436|r 144 ---GNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLA 220 (298)
Q Consensus 144 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (298)
+.++.. . .+. ....+.....+...+...+...|......
T Consensus 111 y~~a~s~~~--------------~----~~~----------~~rDq~~~~~A~~~f~~~i~~yP~S~ya~---------- 152 (235)
T TIGR03302 111 YLRGLSNYK--------------Q----IDD----------SDRDQTAAREAFEAFQELIRRYPNSEYAP---------- 152 (235)
T ss_pred HHHHHHHHH--------------H----CCC----------CCCCHHHHHHHHHHHHHHHHHCCCCHHHH----------
T ss_conf 998799887--------------3----665----------44580899999999999998889965799----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 111111222111223233388899999999999849989999999999861799---989999999999997428887
Q gi|254780436|r 221 TKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR---YYRAKNGILRISQDLSSTVNE 295 (298)
Q Consensus 221 ~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~---~~~a~~~la~i~~~lg~~~~~ 295 (298)
+|.. +.......-+.--+..|..|.+.|+|..|+.-|+.+++--|+ ..+|+..++..+..+|....+
T Consensus 153 -----dA~~---~i~~l~~~LA~~e~~ia~~Y~k~~~y~aAi~r~~~vl~~Yp~t~~~~eAl~~l~eay~~lg~~~~A 222 (235)
T TIGR03302 153 -----DAKK---RMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLALGLTDLA 222 (235)
T ss_pred -----HHHH---HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf -----9999---999999999999999999999841709999999999986899851399999999999986998999
No 100
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.30 E-value=3.9e-06 Score=50.16 Aligned_cols=182 Identities=26% Similarity=0.330 Sum_probs=98.9
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHCC
Q ss_conf 9999999981998999999999998--168998999999999997298522221111111111111111211000-0000
Q gi|254780436|r 39 IEGCSSLFPSMGRRVNIDSLTAVIR--AHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRAL-IRYK 115 (298)
Q Consensus 39 ~~~~~~~~~~~~~~~Ai~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-~~~~ 115 (298)
..........+.+..++..+...+. ..|.....+...|..+...+++..++..+.+++...+........... .+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99888999866379999989998877535235999999999999984399999999998733656426999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11222211111122221111111222222222221111111111121111222222222222222211111111122212
Q gi|254780436|r 116 MGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED 195 (298)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (298)
.+....+...+.......+.
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~------------------------------------------------------------ 162 (291)
T COG0457 143 LGDYEEALELYEKALELDPE------------------------------------------------------------ 162 (291)
T ss_pred HHHHHHHHHHHHHHHHHCHH------------------------------------------------------------
T ss_conf 64099999999999874944------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 111111112221222222222221111111122211122323338-8899999999999849989999999999861799
Q gi|254780436|r 196 FSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK-KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR 274 (298)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~ 274 (298)
...........+......+....++..+..++...+. ....+..++.++...+++++|+..+.+++...|.
T Consensus 163 --------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 163 --------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf --------467899999999898870339999999999986280122799999999998752599999999999872910
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 98999999999999
Q gi|254780436|r 275 YYRAKNGILRISQD 288 (298)
Q Consensus 275 ~~~a~~~la~i~~~ 288 (298)
.......++.++..
T Consensus 235 ~~~~~~~~~~~~~~ 248 (291)
T COG0457 235 NAEALYNLALLLLE 248 (291)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 17999999999883
No 101
>KOG3785 consensus
Probab=98.27 E-value=7.4e-08 Score=59.50 Aligned_cols=54 Identities=11% Similarity=-0.047 Sum_probs=26.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 999998199899999999999816899899999999999729852222111111
Q gi|254780436|r 42 CSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSA 95 (298)
Q Consensus 42 ~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 95 (298)
+-+.+..++|++|+..|+.+...+--+.+.+.+++.+++-+|.|.+|...-.++
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 998875213999999999885367997010252899999999899999998618
No 102
>KOG4642 consensus
Probab=98.26 E-value=8.9e-07 Score=53.62 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99998999999972319-99999999999819989999999999981689989999999999972985222211111111
Q gi|254780436|r 19 SKRRGYYSLLSVLVVSV-ILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALD 97 (298)
Q Consensus 19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 97 (298)
..+.+.|..+....+.. ....+.+-..++...++....+..++++++|+.+.+++.+|........|++||..+.++..
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 46899999988548973024454788888762002666617889860728789999988888752366078999999998
Q ss_pred CC
Q ss_conf 11
Q gi|254780436|r 98 LN 99 (298)
Q Consensus 98 ~~ 99 (298)
+.
T Consensus 107 l~ 108 (284)
T KOG4642 107 LL 108 (284)
T ss_pred HH
T ss_conf 87
No 103
>PRK10803 hypothetical protein; Provisional
Probab=98.21 E-value=1.6e-06 Score=52.18 Aligned_cols=79 Identities=18% Similarity=0.126 Sum_probs=69.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHH
Q ss_conf 211111111222111223233388---8999999999998499899999999998617999---8999999999999742
Q gi|254780436|r 218 YLATKNYDSALEDFKFAINLDPKK---ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY---YRAKNGILRISQDLSS 291 (298)
Q Consensus 218 ~~~~~~~~~a~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~la~i~~~lg~ 291 (298)
....+++++|+..|..-++..|+. +.++|.+|.+|+.+|++++|+..|.+.++..|++ ++|+..+|.++..+|+
T Consensus 152 vl~~k~y~~Ai~aF~~Fi~~yP~s~y~~nA~YWLGe~~y~~~~~~~A~~~F~~vv~~yP~s~K~pdAllklg~~~~~lg~ 231 (262)
T PRK10803 152 VQDKSRQDDAIVAFQNFIKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGD 231 (262)
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 99735699999999999987879987743099999999974378999999999998677998678999999999998599
Q ss_pred HHHHH
Q ss_conf 88874
Q gi|254780436|r 292 TVNEV 296 (298)
Q Consensus 292 ~~~~~ 296 (298)
...+.
T Consensus 232 ~~~Ak 236 (262)
T PRK10803 232 TAKAK 236 (262)
T ss_pred HHHHH
T ss_conf 99999
No 104
>pfam00515 TPR_1 Tetratricopeptide repeat.
Probab=98.17 E-value=2.1e-06 Score=51.64 Aligned_cols=34 Identities=35% Similarity=0.600 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 8999999999998499899999999998617999
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~ 275 (298)
+.+|+++|.+|..+|++++|+++|++||+++|++
T Consensus 1 ~~~~~~lG~~y~~~~~~~~A~~~~~~Al~l~p~~ 34 (34)
T pfam00515 1 AKALYNLGNAYFKLGKYDEAIEYYEKALELNPNN 34 (34)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9799998999999178999999999988439899
No 105
>KOG3060 consensus
Probab=98.14 E-value=5.2e-07 Score=54.89 Aligned_cols=150 Identities=15% Similarity=0.089 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 998999999972319999999-9999981998999999999998168998999999999997298522221111111111
Q gi|254780436|r 21 RRGYYSLLSVLVVSVILLIEG-CSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLN 99 (298)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 99 (298)
++..+..+..-+++..-.... +-.+-..++|++|++.|+..++-||.+...+-.+-.+...+|+--+||+....-++..
T Consensus 71 Aq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F 150 (289)
T KOG3060 71 AQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF 150 (289)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999999986789706798999999986135459999999844686314899999999997188579999999999983
Q ss_pred CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1111112110000000112222111111222211111112222222222-2111111111112111122222
Q gi|254780436|r 100 PRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYR-DERYSDLQKAFADFDRAIQLKT 170 (298)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (298)
+.+..+|..++.++...+.+..|.-++...+-..|.++..+..++.... .....+...+...+...+...+
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_conf 576999999999997676899999999999975987189999999999998418889999999999987274
No 106
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.13 E-value=1.8e-06 Score=51.94 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=39.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHH
Q ss_conf 22222211111111222111223233388---8999999999998499899999999998617999---89999999999
Q gi|254780436|r 213 GRGISYLATKNYDSALEDFKFAINLDPKK---ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY---YRAKNGILRIS 286 (298)
Q Consensus 213 ~~~~~~~~~~~~~~a~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~la~i~ 286 (298)
..+..+...+++..|...|..-++..|+. +.++|.||.+++.+|++++|...|..+++-.|++ ++++.-||.++
T Consensus 146 ~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~ 225 (262)
T COG1729 146 NAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSL 225 (262)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 99999998387889999999999709997556024999889998624616799999999983899998828999999999
Q ss_pred HHHHHHHHH
Q ss_conf 997428887
Q gi|254780436|r 287 QDLSSTVNE 295 (298)
Q Consensus 287 ~~lg~~~~~ 295 (298)
.++|++..+
T Consensus 226 ~~l~~~d~A 234 (262)
T COG1729 226 GRLGNTDEA 234 (262)
T ss_pred HHHCCHHHH
T ss_conf 982177999
No 107
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=5.2e-06 Score=49.46 Aligned_cols=100 Identities=15% Similarity=0.154 Sum_probs=80.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHC
Q ss_conf 1111111122212222222222211111111222111223233388899999999999849---9899999999998617
Q gi|254780436|r 196 FSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQG---SYANAVKYYKKALSVD 272 (298)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~kAl~l~ 272 (298)
....+..+|. +...+..+|..+...+++..|...|.+++++.|++++++..+|.++..+. ...++...+++|+.+|
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
T ss_conf 9999984988-724499999999984443479999999987379988999999999999538844499999999998439
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999899999999999974288874
Q gi|254780436|r 273 SRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 273 P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
|++..+..-||..+...|+...++
T Consensus 224 ~~~iral~lLA~~afe~g~~~~A~ 247 (287)
T COG4235 224 PANIRALSLLAFAAFEQGDYAEAA 247 (287)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 732889999999999814599999
No 108
>KOG3785 consensus
Probab=98.11 E-value=1.3e-06 Score=52.76 Aligned_cols=249 Identities=13% Similarity=0.055 Sum_probs=120.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 99999999981998999999999998168998999999999997298522221111111111111111211000000011
Q gi|254780436|r 38 LIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117 (298)
Q Consensus 38 ~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 117 (298)
-.+.++..+...-|++||+.|++++.-+|+....-..++.||.++.-|+-+-+...--+...|+.+.+....+.......
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ 233 (557)
T KOG3785 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI 233 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 77677779999989999999999970486364567889999985561666899999999968995888889988786543
Q ss_pred CCCCCCCCCCCC----------------------------CCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222211111122----------------------------221111----111222222222221111111111121111
Q gi|254780436|r 118 DVPMAIRDYGTA----------------------------LKINPD----YDVAYIGRGNIYRDERYSDLQKAFADFDRA 165 (298)
Q Consensus 118 ~~~~a~~~~~~~----------------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (298)
....+....... +..-|. .+++..++...+ ...++..++.....
T Consensus 234 ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy--L~q~dVqeA~~L~K-- 309 (557)
T KOG3785 234 NGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY--LNQNDVQEAISLCK-- 309 (557)
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEECCCCHHHHCHHHHHHCHHHHHHHEEEE--CCCCCHHHHHHHHH--
T ss_conf 25005999999985444335669999870769884784178766577743727454112322--14565899999986--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222222222222221111111112221211-------11111122-21222222222221111111122211122323
Q gi|254780436|r 166 IQLKTSDGRAWYGRALVYQMRGEYEKSIEDFS-------QAISLYSS-ISPDYYNGRGISYLATKNYDSALEDFKFAINL 237 (298)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 237 (298)
...|..+..+...+......++......... ........ .........+...+...++++.+..+...-.-
T Consensus 310 -dl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY 388 (557)
T KOG3785 310 -DLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY 388 (557)
T ss_pred -HCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -0699985899999999998631207588999999999985365410245666678899999999887999999989887
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHH
Q ss_conf 3388899999999999849989999999999861799989-99999999999742
Q gi|254780436|r 238 DPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYR-AKNGILRISQDLSS 291 (298)
Q Consensus 238 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~-a~~~la~i~~~lg~ 291 (298)
..++....+|++.++...|++.+|.+.|-+.-..+-++.. -..-|++++..-|.
T Consensus 389 F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785 389 FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 3376035347899998724747787787630682321258999999999871699
No 109
>PRK10866 outer membrane protein assembly complex subunit YfiO; Provisional
Probab=98.09 E-value=2.3e-06 Score=51.39 Aligned_cols=203 Identities=14% Similarity=0.079 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 3199999999999981998999999999998168998---999999999997298522221111111111111111211-
Q gi|254780436|r 33 VSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDP---EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYAN- 108 (298)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~- 108 (298)
.+...+...+...+..++|.+|++.|+++....|..+ .+...++.+|++.|++++|+..+++-+++.|.++..-+.
T Consensus 30 ~~~~~~Y~~A~~~~~~~~y~~A~~~fe~l~~~yP~s~~A~qA~L~~ayayy~~~~y~~A~~~~~rFi~lyP~~~~v~Ya~ 109 (243)
T PRK10866 30 NPPNEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFMRLNPTHPNIDYVM 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999999878999999999999986899767899999999998730778999999999998678999738999
Q ss_pred --CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --000000011222211111122221111111222222222221111111111121111222222222222222211111
Q gi|254780436|r 109 --RALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMR 186 (298)
Q Consensus 109 --~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (298)
.|.+....... . +......++.. ........+...+...+...|......
T Consensus 110 Yl~gl~~~~~~~~--~---~~~~~~~~~~~-------------rD~~~~~~A~~~f~~li~~yP~S~Ya~---------- 161 (243)
T PRK10866 110 YMRGLTNMALDDS--A---LQGFFGVDRSD-------------RDPQHARAAFSDFSKLVRGYPNSQYTT---------- 161 (243)
T ss_pred HHHHHHHHHCCHH--H---HHHHHCCCHHH-------------CCHHHHHHHHHHHHHHHHHCCCCHHHH----------
T ss_conf 9988987740135--8---88874325643-------------076999999999999998789984589----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 111122212111111112221222222222221111111122211122323338---88999999999998499899999
Q gi|254780436|r 187 GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK---KASFWFNGGMVYEMQGSYANAVK 263 (298)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~ 263 (298)
++. .+...... .....-...|..+...+.+..|+.-++.+++..|+ .++++..+..+|..+|..++|.+
T Consensus 162 ----dA~---~r~~~lrn-~LA~~El~Va~fY~kr~~y~AAi~R~~~vi~~Yp~t~~~~eAL~~l~eaY~~Lgl~~~A~~ 233 (243)
T PRK10866 162 ----DAT---KRLVFLKD-RLAKYEYSVAEYYTKRGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQADK 233 (243)
T ss_pred ----HHH---HHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf ----999---99999999-9999999999999992656999999999997689996339999999999998699789999
Q ss_pred HHHHHHHHC
Q ss_conf 999998617
Q gi|254780436|r 264 YYKKALSVD 272 (298)
Q Consensus 264 ~~~kAl~l~ 272 (298)
. .+.|..|
T Consensus 234 ~-~~vL~~N 241 (243)
T PRK10866 234 V-AKIIAAN 241 (243)
T ss_pred H-HHHHHHH
T ss_conf 9-9999612
No 110
>pfam04733 Coatomer_E Coatomer epsilon subunit. This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.
Probab=98.08 E-value=3.3e-06 Score=50.51 Aligned_cols=192 Identities=16% Similarity=0.143 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
Q ss_conf 99899999999999--8168998999999999997298522221111111111111111211000000011222211111
Q gi|254780436|r 49 MGRRVNIDSLTAVI--RAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDY 126 (298)
Q Consensus 49 ~~~~~Ai~~~~~al--~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 126 (298)
.+.+.++..+.+-+ ...+.++.....-|.+|...|++++|+....+. .+.........++..+++.+.|....
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~aati~~~~g~~e~AL~~l~~~-----~~lE~~al~VQi~L~~nR~DLA~ke~ 154 (290)
T pfam04733 80 SRKESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDALKHLHKG-----ENLEAMALNVQILLKMHRIDLAEQQL 154 (290)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 1145699999999874015667899999999999779999999998558-----96679999999999728836799999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12222111111122222222222111111111112111122222222222222221111111112221211111111222
Q gi|254780436|r 127 GTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSI 206 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (298)
......+..... ..+...+.....+ ......+...+... ......
T Consensus 155 ~~~q~~~eDs~l--~qLa~awv~l~~G--------------------------------gek~q~A~yif~EL-~~~~~~ 199 (290)
T pfam04733 155 KKMQQIDEDATL--TQLANAWVKLAVG--------------------------------GEKIQDAYYIFQEF-SEKYDS 199 (290)
T ss_pred HHHHHCCCCHHH--HHHHHHHHHHHHC--------------------------------CHHHHHHHHHHHHH-HHHCCC
T ss_conf 998843510599--9999999999726--------------------------------47789899999999-852289
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHCCCCHHHHH
Q ss_conf 122222222222111111112221112232333888999999999998499899999-99999861799989999
Q gi|254780436|r 207 SPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVK-YYKKALSVDSRYYRAKN 280 (298)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~kAl~l~P~~~~a~~ 280 (298)
.+......+.+...++++++|...+..++..+|++++...|+..+-..+|+-.+... +..+.-..+|+|+-...
T Consensus 200 t~lllng~Av~~m~~~~~~eAe~~L~eAl~~d~~d~dtlaNliv~s~~~gK~~e~~~ryl~qL~~~~p~H~~v~~ 274 (290)
T pfam04733 200 TPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLINLVVCALHLGKPAEVSNRNLSQLKLSHPTHPLVKD 274 (290)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 789999999999874787999999999987288988999999999998099878999999999862999859999
No 111
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.07 E-value=7.9e-05 Score=43.06 Aligned_cols=201 Identities=16% Similarity=0.080 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3199999999999981998999999999998168998---9999999999972985222211111111111111112110
Q gi|254780436|r 33 VSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDP---EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANR 109 (298)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (298)
.....+.+.+....+.|+|.+|+..|+.+...+|..+ ++...++.++++.++++.|+...++-+.+.|+++..-+..
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 88999999999998637889999999999870999811289999999998813558999999999998789998716999
Q ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000011222211111122221111111222222222221111111111121111222222222222222211111111
Q gi|254780436|r 110 ALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEY 189 (298)
Q Consensus 110 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (298)
-..... .+.... .+. ........+...+...+..-|.......
T Consensus 112 YlkgLs---------~~~~i~--~~~--------------rDq~~~~~A~~~f~~~i~ryPnS~Ya~d------------ 154 (254)
T COG4105 112 YLKGLS---------YFFQID--DVT--------------RDQSAARAAFAAFKELVQRYPNSRYAPD------------ 154 (254)
T ss_pred HHHHHH---------HHCCCC--CCC--------------CCHHHHHHHHHHHHHHHHHCCCCCCHHH------------
T ss_conf 999998---------752677--544--------------4779999999999999987889702355------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 1222121111111122212222222222211111111222111223233388---8999999999998499899999999
Q gi|254780436|r 190 EKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKK---ASFWFNGGMVYEMQGSYANAVKYYK 266 (298)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~ 266 (298)
+..... .... .....-...+..+.+.+.+..++..++..++..|+. .+++..+..+|..+|-.++|- ...
T Consensus 155 --A~~~i~---~~~d-~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~-~~~ 227 (254)
T COG4105 155 --AKARIV---KLND-ALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAK-KTA 227 (254)
T ss_pred --HHHHHH---HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHH-HHH
T ss_conf --999999---9999-988999999999999057699999999998714555204778999999999828727899-999
Q ss_pred HHHHHCCCCHH
Q ss_conf 99861799989
Q gi|254780436|r 267 KALSVDSRYYR 277 (298)
Q Consensus 267 kAl~l~P~~~~ 277 (298)
+.|..|+-+.+
T Consensus 228 ~vl~~N~p~s~ 238 (254)
T COG4105 228 KVLGANYPDSQ 238 (254)
T ss_pred HHHHHCCCCCC
T ss_conf 99973689882
No 112
>KOG3081 consensus
Probab=98.03 E-value=2.5e-06 Score=51.20 Aligned_cols=240 Identities=10% Similarity=0.037 Sum_probs=128.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 99999998199899999999999816899899999999999729852222111111111111111121100000001122
Q gi|254780436|r 40 EGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDV 119 (298)
Q Consensus 40 ~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 119 (298)
-.+...|-.|+|..+|..-...-..+ ..++....+...|..+|++..-+.....+- ..| ..+....+.....-+..
T Consensus 13 F~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~-~~~--lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081 13 FNIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK-ATP--LQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCH--HHHHHHHHHHHHCCCHH
T ss_conf 88887887668999988887520456-406899999999997155334353123356-876--89999999886080026
Q ss_pred CCCCCCCCCCCC-C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 221111112222-1-11111122222222222111111111112111122222222222222221111111112221211
Q gi|254780436|r 120 PMAIRDYGTALK-I-NPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFS 197 (298)
Q Consensus 120 ~~a~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (298)
+.-+........ . ...+.......+..+ ...++...+....... ...........+..+....+.+.....
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~--~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk 161 (299)
T KOG3081 89 KSILASLYELVADSTDGSNLIDLLLAAIIY--MHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELK 161 (299)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 778887999987501441389999766875--4278868999998521-----248899987799998789999999999
Q ss_pred CCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 1111112221222222222----221111111122211122323338889999999999984998999999999986179
Q gi|254780436|r 198 QAISLYSSISPDYYNGRGI----SYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDS 273 (298)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P 273 (298)
+....+.... ...++. ..........|.-.|+..-+..|..+......+.|...+|++++|....+.||.-+|
T Consensus 162 ~mq~ided~t---LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081 162 KMQQIDEDAT---LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHHCCCHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 9971135789---9999999999960632454689999998353599768870699998971699999999999985347
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999999974288
Q gi|254780436|r 274 RYYRAKNGILRISQDLSSTV 293 (298)
Q Consensus 274 ~~~~a~~~la~i~~~lg~~~ 293 (298)
+++++..|+-.+-..+|.-.
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081 239 KDPETLANLIVLALHLGKDA 258 (299)
T ss_pred CCHHHHHHHHHHHHHHCCCH
T ss_conf 87899999999999818991
No 113
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.02 E-value=4.1e-06 Score=50.04 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=87.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---HHHHHHHHH
Q ss_conf 222222111111111222121111111122--212222222222211111111222111223233388---899999999
Q gi|254780436|r 176 WYGRALVYQMRGEYEKSIEDFSQAISLYSS--ISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKK---ASFWFNGGM 250 (298)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~---~~~~~~lg~ 250 (298)
.+..+......+++..+...+...+...|. .....++++|.+++.++++..|...|..+.+..|++ +++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99999999983878899999999997099975560249998899986246167999999999838999988289999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99984998999999999986179998999999999
Q gi|254780436|r 251 VYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRI 285 (298)
Q Consensus 251 ~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i 285 (298)
+...+|+.++|...|+++++-.|+...|...-..+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99982177999999999998789977999999987
No 114
>KOG1308 consensus
Probab=98.02 E-value=4e-07 Score=55.50 Aligned_cols=98 Identities=22% Similarity=0.193 Sum_probs=88.4
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf 99999999819989999999999981689989999999999972985222211111111111111112110000000112
Q gi|254780436|r 39 IEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGD 118 (298)
Q Consensus 39 ~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 118 (298)
.-.+...+..+.+.+||+.|+.+|+++|..+..|..+|.++.++++...||.++..+++++|+....+...+.....++.
T Consensus 118 k~~A~ealn~G~~~~ai~~~t~ai~lnp~~A~l~~kR~sv~lkl~kp~aairD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 78889873276433331155312036994344105534100223687346540245541683102355303489987202
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 222111111222211111
Q gi|254780436|r 119 VPMAIRDYGTALKINPDY 136 (298)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~ 136 (298)
+..+...+..+..++...
T Consensus 198 ~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308 198 WEEAAHDLALACKLDYDE 215 (377)
T ss_pred HHHHHHHHHHHHHCCCCH
T ss_conf 287777999998616547
No 115
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.02 E-value=2.7e-05 Score=45.54 Aligned_cols=171 Identities=23% Similarity=0.299 Sum_probs=111.9
Q ss_pred HHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHHHCCCCCCCCCCCCCCCCCCCC---CCCCCCC
Q ss_conf 1999999-9999998199899999999999816899899999999-999729852222111111111111---1111211
Q gi|254780436|r 34 SVILLIE-GCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGV-VYGMNGDFEKALLDFQSALDLNPR---YYKVYAN 108 (298)
Q Consensus 34 ~~~~~~~-~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~ 108 (298)
.....+. .+......+.+..++..+.+++...+.........+. ++...|+++.|+..+.+++...|. .......
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 172 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLA 172 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_conf 35999999999999984399999999998733656426999999999998640999999999998749444678999999
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00000001122221111112222111111122222222222111111111112111122222222222222221111111
Q gi|254780436|r 109 RALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGE 188 (298)
Q Consensus 109 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (298)
.+......+....+...+.......+..
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------------------------------- 200 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLNPDD---------------------------------------------------- 200 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------------------------
T ss_conf 9989887033999999999998628012----------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 11222121111111122212222222222211111111222111223233388899999999999849989999999999
Q gi|254780436|r 189 YEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKA 268 (298)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kA 268 (298)
........+..+...+.+..+...+..++...|.....+..++..+...|.++++...+.++
T Consensus 201 ------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (291)
T COG0457 201 ------------------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKA 262 (291)
T ss_pred ------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf ------------------27999999999987525999999999998729101799999999988388699999999999
Q ss_pred HHHCCC
Q ss_conf 861799
Q gi|254780436|r 269 LSVDSR 274 (298)
Q Consensus 269 l~l~P~ 274 (298)
++.+|.
T Consensus 263 ~~~~~~ 268 (291)
T COG0457 263 LELDPD 268 (291)
T ss_pred HHHCHH
T ss_conf 987988
No 116
>KOG4555 consensus
Probab=97.98 E-value=4.9e-06 Score=49.61 Aligned_cols=97 Identities=21% Similarity=0.307 Sum_probs=77.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCHHHCCC
Q ss_conf 999999819989999999999981689989999999999972985222211111111111111----1121100000001
Q gi|254780436|r 41 GCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYY----KVYANRALIRYKM 116 (298)
Q Consensus 41 ~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~~~~~~~~~ 116 (298)
.+..+-..+....|++.|.+++.+-|..+.+|+|++.++.-.|+.++|++++++++++..... ..+...|.++...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98898850456789999999998543353866139999987288187899899999862862069999999999999993
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 122221111112222111111
Q gi|254780436|r 117 GDVPMAIRDYGTALKINPDYD 137 (298)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~ 137 (298)
++.+.+...|..+..+.....
T Consensus 129 g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555 129 GNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred CCHHHHHHHHHHHHHHCCHHH
T ss_conf 761888886999998678789
No 117
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.97 E-value=1e-05 Score=47.88 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
Q ss_conf 19989999999999981689989999999999972985222211111111111111112110000000112222111111
Q gi|254780436|r 48 SMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYG 127 (298)
Q Consensus 48 ~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 127 (298)
.|+-.+++..|+.....-|-...++..+|.+|...++|+.|++.|++++...|+++.....+.......++...|.....
T Consensus 78 ag~d~~v~~~~~~~~~~~~lp~~~l~~~Aka~Rn~kq~~~Al~ly~~~~~~~P~n~d~~lGlalt~Ada~~~~~Al~~~~ 157 (818)
T PRK10049 78 AGQDQEVITVYERYQSHMQLPARGLAAAARAYRNLKQWQNSLTLWQKALSLEPQNKDYQSGQILTLADAGHYDEALVKAK 157 (818)
T ss_pred CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 47777999999961888889979999999998635546779999999850299994078999999986388699999999
Q ss_pred CCCCCCCCCCC
Q ss_conf 22221111111
Q gi|254780436|r 128 TALKINPDYDV 138 (298)
Q Consensus 128 ~~~~~~~~~~~ 138 (298)
......|....
T Consensus 158 ~~~~~~p~~~~ 168 (818)
T PRK10049 158 QLVAGAPDVAN 168 (818)
T ss_pred HHHHHCCCHHH
T ss_conf 98762897678
No 118
>KOG4555 consensus
Probab=97.94 E-value=9.6e-06 Score=48.02 Aligned_cols=86 Identities=23% Similarity=0.211 Sum_probs=73.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHH
Q ss_conf 22222222111111112221112232333888999999999998499899999999998617999----89999999999
Q gi|254780436|r 211 YNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY----YRAKNGILRIS 286 (298)
Q Consensus 211 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~----~~a~~~la~i~ 286 (298)
....+......++.+.|++.|.+++..-|..+.+|+|++.++.-+|+.++|++++++|+++.-.- ..++...|.++
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 99998898850456789999999998543353866139999987288187899899999862862069999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9974288874
Q gi|254780436|r 287 QDLSSTVNEV 296 (298)
Q Consensus 287 ~~lg~~~~~~ 296 (298)
+-+|+...+-
T Consensus 126 Rl~g~dd~AR 135 (175)
T KOG4555 126 RLLGNDDAAR 135 (175)
T ss_pred HHHCCHHHHH
T ss_conf 9937618888
No 119
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.88 E-value=1.5e-05 Score=47.04 Aligned_cols=34 Identities=38% Similarity=0.627 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 8999999999998499899999999998617999
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~ 275 (298)
+.+|+++|.+|..+|++++|+++|++|++++|++
T Consensus 1 ~~~~~~lg~~y~~~~~~~~Ai~~~~~al~~~p~~ 34 (34)
T smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf 9289998999998236999999999977359999
No 120
>pfam09295 ChAPs ChAPs (Chs5p-Arf1p-binding proteins). ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialized cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they form also interactions with each other.
Probab=97.84 E-value=2.8e-05 Score=45.47 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 79999899999997231999999999999819989999999999981689989999999999972985222211111111
Q gi|254780436|r 18 SSKRRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALD 97 (298)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 97 (298)
.+.+...+..+....+.+..+. +..+....+--+|+....+++..+|.++..+...+..+...|+++-|+..-++++.
T Consensus 185 ~~~~~~~le~L~~~~p~v~~ll--akv~~~~~~E~~av~~i~~~L~~~p~d~~LL~~Qa~FLl~K~~yelAL~~A~~av~ 262 (395)
T pfam09295 185 YDRALNLLEKLREEEPEVVSLL--ARVLLLMDEEIDAVKLMHDALQENPMDYELLCLQAEFLLSKKKDELALECAKRAVN 262 (395)
T ss_pred HHHHHHHHHHHHHCCCHHHHHH--HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 8989999999875184499999--99999656089999999999861887678999999999817988999999999873
Q ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 11111111211000000011222211111122
Q gi|254780436|r 98 LNPRYYKVYANRALIRYKMGDVPMAIRDYGTA 129 (298)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 129 (298)
+.|.....|..++.++...++++.|.-.....
T Consensus 263 ~~P~~F~~W~~La~~Yi~l~d~e~ALl~LNS~ 294 (395)
T pfam09295 263 SAPSEFKTWALLVKVYIKLEDWENALLTLNSC 294 (395)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 17866188999999999863299999999568
No 121
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.84 E-value=9.7e-06 Score=47.99 Aligned_cols=105 Identities=23% Similarity=0.268 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98999999999997298522221111111111111111211000000011222211111122221111111222222222
Q gi|254780436|r 68 DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIY 147 (298)
Q Consensus 68 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
-+..++.||..|.++|-..-|.-+|.+++.+.|+.+..+..+|..+...++++.+.+.+......+|...-+..+.+...
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHCCCEEE
T ss_conf 88998861203422407999860145666349675899989999998602205799986667104775107776044023
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 221111111111121111222222222
Q gi|254780436|r 148 RDERYSDLQKAFADFDRAIQLKTSDGR 174 (298)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (298)
... +....+...+......+|.++.
T Consensus 144 YY~--gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 144 YYG--GRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred EEC--CCCHHHHHHHHHHHHCCCCCHH
T ss_conf 444--7515559999999844989807
No 122
>KOG0551 consensus
Probab=97.84 E-value=1.4e-05 Score=47.06 Aligned_cols=97 Identities=22% Similarity=0.249 Sum_probs=81.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 9999999998199899999999999816899----899999999999729852222111111111111111121100000
Q gi|254780436|r 38 LIEGCSSLFPSMGRRVNIDSLTAVIRAHPSD----PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIR 113 (298)
Q Consensus 38 ~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 113 (298)
.-+.+..+++.+.|..|+.+|++.|+..-.+ +..|.||+.+...+|+|..|+.+..+++.++|++..+++.-+.+.
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 88876898777567689999988876418992378998842999999999899999999998614873044343566899
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 001122221111112222111
Q gi|254780436|r 114 YKMGDVPMAIRDYGTALKINP 134 (298)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~ 134 (298)
..+..+..+.......+..+.
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551 164 LELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999888887777765311017
No 123
>KOG2053 consensus
Probab=97.80 E-value=8.8e-06 Score=48.23 Aligned_cols=226 Identities=12% Similarity=0.017 Sum_probs=119.4
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 98199899999999999816899899999999999729852222111111111111111121100000001122221111
Q gi|254780436|r 46 FPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRD 125 (298)
Q Consensus 46 ~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 125 (298)
...+++.+|+....+.++.+|+-..+....|.+..++|+.++|...++..-...+++......+..++...++.+++...
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 52677999999999999878991799999999999815864678887513047998568999999999987425689999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC---------
Q ss_conf 112222111111122222222222111111-1111121111222222222222222211111-11112221---------
Q gi|254780436|r 126 YGTALKINPDYDVAYIGRGNIYRDERYSDL-QKAFADFDRAIQLKTSDGRAWYGRALVYQMR-GEYEKSIE--------- 194 (298)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------- 194 (298)
+.++....|. ......+..++........ ..+..... ...|......+......... ........
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~Ly---K~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLY---KNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 9998710884-8899999999999888999999999999---85876640589999999982258863211032788999
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 211111111-222122222222222111111112221112--23233388899999999999849989999999999861
Q gi|254780436|r 195 DFSQAISLY-SSISPDYYNGRGISYLATKNYDSALEDFKF--AINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSV 271 (298)
Q Consensus 195 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~--a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l 271 (298)
......... .-....-....-.+...++.+.+|...+.. +-...+.+...-...+..+..++++.+-.+.-.+.++-
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 99998614775103899999999998624678899999788887426544689998889999846768899999999984
Q ss_pred CCCC
Q ss_conf 7999
Q gi|254780436|r 272 DSRY 275 (298)
Q Consensus 272 ~P~~ 275 (298)
+|++
T Consensus 256 ~~Dd 259 (932)
T KOG2053 256 GNDD 259 (932)
T ss_pred CCCC
T ss_conf 7841
No 124
>KOG2376 consensus
Probab=97.79 E-value=2.3e-06 Score=51.40 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------------------------CC----CHHHHHHHHHHHHHCCC
Q ss_conf 999999999998199899999999999816---------------------------89----98999999999997298
Q gi|254780436|r 36 ILLIEGCSSLFPSMGRRVNIDSLTAVIRAH---------------------------PS----DPEGYNVRGVVYGMNGD 84 (298)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~---------------------------P~----~~~~~~~lg~~~~~~g~ 84 (298)
..+.-.+..+|+.+.|++|++.|+..++-+ |. ..+.++|.+.++...|+
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 88999999999875389999999999855870578999978999887404779874558885429999999999985034
Q ss_pred CCCCCCCCCCCCCCC--------C-------CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 522221111111111--------1-------1111121100000001122221111112222111111
Q gi|254780436|r 85 FEKALLDFQSALDLN--------P-------RYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYD 137 (298)
Q Consensus 85 ~~~A~~~~~~al~~~--------~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (298)
|.+|++.+++++.+. . ........++.++...|+..++...+...+..++.+.
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC
T ss_conf 89999999999998887631466530668888778999999999994330878999999987268882
No 125
>KOG0376 consensus
Probab=97.79 E-value=7.7e-06 Score=48.53 Aligned_cols=100 Identities=17% Similarity=0.121 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 979999899999997231999999-9999998199899999999999816899899999999999729852222111111
Q gi|254780436|r 17 RSSKRRGYYSLLSVLVVSVILLIE-GCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSA 95 (298)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 95 (298)
.-+.+...++.+..+.++...++. .+....+..++..|+.++.++|+.+|....+|..+|.+.+.++.+.+|+..|++.
T Consensus 19 ~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376 19 VFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECHHHHHHEEECHHHHHHHHHHHHHHCCCHHHHEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 19999999999985288632442302123432000336778777635408012330343117787577799999999876
Q ss_pred CCCCCCCCCCCCCCCHHHCCC
Q ss_conf 111111111121100000001
Q gi|254780436|r 96 LDLNPRYYKVYANRALIRYKM 116 (298)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~~ 116 (298)
..+.|+.+.+......+....
T Consensus 99 ~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376 99 KKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHCCCCCHHHHHHHHHHHHHH
T ss_conf 623867688998789999999
No 126
>pfam09295 ChAPs ChAPs (Chs5p-Arf1p-binding proteins). ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialized cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they form also interactions with each other.
Probab=97.76 E-value=6.6e-05 Score=43.48 Aligned_cols=88 Identities=10% Similarity=0.026 Sum_probs=74.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 22222222221111111122211122323338889999999999984998999999999986179998999999999999
Q gi|254780436|r 209 DYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQD 288 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~ 288 (298)
.....++..+...++..+++....+++...|.++..+.-.+..+...|+++-|+..-++|+.+-|.....|..|+.++..
T Consensus 201 ~v~~llakv~~~~~~E~~av~~i~~~L~~~p~d~~LL~~Qa~FLl~K~~yelAL~~A~~av~~~P~~F~~W~~La~~Yi~ 280 (395)
T pfam09295 201 EVVSLLARVLLLMDEEIDAVKLMHDALQENPMDYELLCLQAEFLLSKKKDELALECAKRAVNSAPSEFKTWALLVKVYIK 280 (395)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 49999999999656089999999999861887678999999999817988999999999873178661889999999998
Q ss_pred HHHHHHHH
Q ss_conf 74288874
Q gi|254780436|r 289 LSSTVNEV 296 (298)
Q Consensus 289 lg~~~~~~ 296 (298)
+|+..+++
T Consensus 281 l~d~e~AL 288 (395)
T pfam09295 281 LEDWENAL 288 (395)
T ss_pred HHHHHHHH
T ss_conf 63299999
No 127
>KOG0551 consensus
Probab=97.71 E-value=1.1e-05 Score=47.73 Aligned_cols=84 Identities=11% Similarity=0.076 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9998999999972-----31999999999999819989999999999981689989999999999972985222211111
Q gi|254780436|r 20 KRRGYYSLLSVLV-----VSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQS 94 (298)
Q Consensus 20 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 94 (298)
.|...|+....-. .+..+..+.+++.+..++|..+|.++++++.++|.+..++..-+.|++.+..+.+|+...+.
T Consensus 99 ~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551 99 DAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999988876418992378998842999999999899999999998614873044343566899999888887777765
Q ss_pred CCCCCCCCC
Q ss_conf 111111111
Q gi|254780436|r 95 ALDLNPRYY 103 (298)
Q Consensus 95 al~~~~~~~ 103 (298)
.+.++....
T Consensus 179 ~~~~d~e~K 187 (390)
T KOG0551 179 GLQIDDEAK 187 (390)
T ss_pred HHHHHHHHH
T ss_conf 311017789
No 128
>KOG1308 consensus
Probab=97.70 E-value=8.6e-06 Score=48.28 Aligned_cols=83 Identities=27% Similarity=0.406 Sum_probs=34.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 11222121111111122212222222222211111111222111223233388899999999999849989999999999
Q gi|254780436|r 189 YEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKA 268 (298)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kA 268 (298)
...++..+..++...+. ....+..++.++...+....++..+..+++++|+.+..|-.+|.+...+|++++|..++..|
T Consensus 130 ~~~ai~~~t~ai~lnp~-~A~l~~kR~sv~lkl~kp~aairD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a 208 (377)
T KOG1308 130 FDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALA 208 (377)
T ss_pred HHHHHCCCCCCCCCCCC-HHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 33331155312036994-34410553410022368734654024554168310235530348998720228777799999
Q ss_pred HHHC
Q ss_conf 8617
Q gi|254780436|r 269 LSVD 272 (298)
Q Consensus 269 l~l~ 272 (298)
.+++
T Consensus 209 ~kld 212 (377)
T KOG1308 209 CKLD 212 (377)
T ss_pred HHCC
T ss_conf 8616
No 129
>pfam07719 TPR_2 Tetratricopeptide repeat. This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Probab=97.62 E-value=4.6e-05 Score=44.35 Aligned_cols=33 Identities=33% Similarity=0.575 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999998499899999999998617999
Q gi|254780436|r 243 SFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 (298)
Q Consensus 243 ~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~ 275 (298)
.+|+++|.++..+|++++|+++|++|++++|++
T Consensus 2 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 34 (34)
T pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34 (34)
T ss_pred HHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCC
T ss_conf 168750148762166999999999977269999
No 130
>PRK10941 putative transcriptional regulator; Provisional
Probab=97.49 E-value=0.00022 Score=40.68 Aligned_cols=76 Identities=11% Similarity=0.050 Sum_probs=67.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 2222222221111111122211122323338889999999999984998999999999986179998999999999
Q gi|254780436|r 210 YYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRI 285 (298)
Q Consensus 210 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i 285 (298)
....+...+...++++.|+.+.+..+...|+++.-+-.+|.+|.++|.+..|+.+++.-++..|+.+.+-.-...+
T Consensus 183 mL~nLK~~~~~e~~~~~AL~~~e~lL~l~Pddp~EiRDRGli~~qL~c~~~Al~DLe~fle~~P~dp~ae~ik~qi 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFNPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999999998511499999999999862969979999999999984994899999999999785972899999999
No 131
>KOG1130 consensus
Probab=97.46 E-value=2.3e-05 Score=45.94 Aligned_cols=280 Identities=14% Similarity=0.138 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCC
Q ss_conf 5979999899999997231999999-----999999819989999999999981------68998999999999997298
Q gi|254780436|r 16 LRSSKRRGYYSLLSVLVVSVILLIE-----GCSSLFPSMGRRVNIDSLTAVIRA------HPSDPEGYNVRGVVYGMNGD 84 (298)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~Ai~~~~~al~~------~P~~~~~~~~lg~~~~~~g~ 84 (298)
.+-.+-.+++..+...-.......+ .+.+++..++|++|++.-+.-|.+ .-..+.+--++|.++.-+|.
T Consensus 31 gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~ 110 (639)
T KOG1130 31 GDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGA 110 (639)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCHHHHHCC
T ss_conf 46245689999999836127889999999741144467639999764223577998744420122004552014563023
Q ss_pred CCCCCCCCCCCCCCCCC------CCCCCCCCCHHHCCCCCCCCCCCCC-------------CCCCCCCCC----------
Q ss_conf 52222111111111111------1111211000000011222211111-------------122221111----------
Q gi|254780436|r 85 FEKALLDFQSALDLNPR------YYKVYANRALIRYKMGDVPMAIRDY-------------GTALKINPD---------- 135 (298)
Q Consensus 85 ~~~A~~~~~~al~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~~-------------~~~~~~~~~---------- 135 (298)
|++|+.+..+-+.+... ...+++++|.++...|......... ..+......
T Consensus 111 fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgD 190 (639)
T KOG1130 111 FDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGD 190 (639)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 20688999988679999747776657774111112212641588881430655478899999999999998999987446
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf ---11122222222222111111111112111122222------2222222222211111111122212111111112--
Q gi|254780436|r 136 ---YDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKT------SDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYS-- 204 (298)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 204 (298)
....+..++..+. ..+++..++......+.... ........++......+....+...+........
T Consensus 191 r~aqGRa~GnLGNTyY--lLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel 268 (639)
T KOG1130 191 RLAQGRAYGNLGNTYY--LLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL 268 (639)
T ss_pred HHHHCCHHCCCCCEEE--EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 7763311024576356--50457999999999999999863188887764043103555304276999999999999996
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----
Q ss_conf ---2212222222222211111111222111223233------388899999999999849989999999999861----
Q gi|254780436|r 205 ---SISPDYYNGRGISYLATKNYDSALEDFKFAINLD------PKKASFWFNGGMVYEMQGSYANAVKYYKKALSV---- 271 (298)
Q Consensus 205 ---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l---- 271 (298)
.......+.++..+....++..|+.++.+-+.+- .....+++.+|.++..+|..++|+.+.++.+++
T Consensus 269 g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev 348 (639)
T KOG1130 269 GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEV 348 (639)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 31368889898764489999999999999999999999988764148999998788876421788899999999998873
Q ss_pred -CCC-CHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -799-98999999999999742888743
Q gi|254780436|r 272 -DSR-YYRAKNGILRISQDLSSTVNEVN 297 (298)
Q Consensus 272 -~P~-~~~a~~~la~i~~~lg~~~~~~n 297 (298)
||. -..|+.||..+...+|-....|.
T Consensus 349 ~D~sgelTar~Nlsdl~~~lG~~ds~~~ 376 (639)
T KOG1130 349 NDTSGELTARDNLSDLILELGQEDSLVD 376 (639)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 7862023443206789998288745678
No 132
>KOG3824 consensus
Probab=97.44 E-value=0.00024 Score=40.45 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 19999999999998199899999999999816899899999999999729852222111111111111111121100000
Q gi|254780436|r 34 SVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIR 113 (298)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 113 (298)
........++...++|+.++|...|..|+.+.|.+++++...|......++.-+|-.+|-+++.+.|.+..+..+.....
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHCCC
T ss_conf 99999999889886434688999999998308997799999768888514467665564202321798558775031154
No 133
>KOG4507 consensus
Probab=97.43 E-value=6.2e-05 Score=43.64 Aligned_cols=94 Identities=15% Similarity=0.076 Sum_probs=59.2
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 986632597999989999999723---19999999999998199899999999999816899899999999999729852
Q gi|254780436|r 10 KFGCGFLRSSKRRGYYSLLSVLVV---SVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFE 86 (298)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 86 (298)
.++..-.++.++...+..+..+.+ ..+.+.+.+..+++.|..-+|--.+..|+.--|.....++-+|.++..+|++.
T Consensus 221 ~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N 300 (886)
T KOG4507 221 FYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYN 300 (886)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99997388544457899876517830010057679999987124211133311340577533566201899999986620
Q ss_pred CCCCCCCCCCCCCCCCC
Q ss_conf 22211111111111111
Q gi|254780436|r 87 KALLDFQSALDLNPRYY 103 (298)
Q Consensus 87 ~A~~~~~~al~~~~~~~ 103 (298)
..+..|..+.+..|...
T Consensus 301 ~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507 301 HSVLCYDHALQARPGFE 317 (886)
T ss_pred HHHHHHHHHHCCCCCCH
T ss_conf 26653566640385301
No 134
>KOG0545 consensus
Probab=97.35 E-value=7.5e-05 Score=43.16 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=76.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCCC----------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222222111111111222121111111-------1222----------12222222222211111111222111223233
Q gi|254780436|r 176 WYGRALVYQMRGEYEKSIEDFSQAISL-------YSSI----------SPDYYNGRGISYLATKNYDSALEDFKFAINLD 238 (298)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~ 238 (298)
....+...+..+.+.++...+..++.. ..+. ....+.+...++...+++-+.++.....+..+
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98750146662217789999999999999887404899818999987633778867778744878999999889998508
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 38889999999999984998999999999986179998999
Q gi|254780436|r 239 PKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAK 279 (298)
Q Consensus 239 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~ 279 (298)
|.|..+|+.+|.+....=+..+|..+|.++|+++|.-..+.
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 85089999987787753688888889999986195667899
No 135
>KOG2796 consensus
Probab=97.35 E-value=0.0018 Score=35.65 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=78.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 2222222222221111111112221211111111-----22212222222222211111111222111223233388899
Q gi|254780436|r 170 TSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLY-----SSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF 244 (298)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~ 244 (298)
+..+.....++......++...+...+....... ...........+..+...+++..+...+.+.+..+|.++.+
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a 288 (366)
T KOG2796 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA 288 (366)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEECCCCHHHHHHHHHHCCCCCCCCHHH
T ss_conf 30679999987888860438889989999998761432340467887634420221333599999885042248987022
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH---HHHHHHHHH
Q ss_conf 999999999849989999999999861799989---999999999
Q gi|254780436|r 245 WFNGGMVYEMQGSYANAVKYYKKALSVDSRYYR---AKNGILRIS 286 (298)
Q Consensus 245 ~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~---a~~~la~i~ 286 (298)
-++.+.|+..+|+..+|++..+.+++++|...- ...||..++
T Consensus 289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy 333 (366)
T KOG2796 289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY 333 (366)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 051999999987788999999987611886210145888789899
No 136
>KOG1070 consensus
Probab=97.34 E-value=7.4e-06 Score=48.63 Aligned_cols=224 Identities=12% Similarity=0.077 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCC----CCCCCHHHCCCCCCCCCCCCC
Q ss_conf 9999999999981689989999999999972985222211111111-11111111----211000000011222211111
Q gi|254780436|r 52 RVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALD-LNPRYYKV----YANRALIRYKMGDVPMAIRDY 126 (298)
Q Consensus 52 ~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~----~~~~~~~~~~~~~~~~a~~~~ 126 (298)
.+..++|.+.+..+|+.+-.|..-=.....+++.++|.+.+++|+. +++....- |...-.+....|........+
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 76778899998609984028999999885024567789999998611786416777778999986787527689999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-
Q ss_conf 1222211111112222222222211111111111211112222222222222222111111111222121111111122-
Q gi|254780436|r 127 GTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSS- 205 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 205 (298)
.++.+...... .+..+..+| ........+...+.............+...+.......+...+.....+++...|.
T Consensus 1521 eRAcqycd~~~-V~~~L~~iy--~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070 1521 ERACQYCDAYT-VHLKLLGIY--EKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred HHHHHHCCHHH-HHHHHHHHH--HHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHH
T ss_conf 99987433688-999988799--876231048999999999865325689999999851447889999999998646502
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 2122222222222111111112221112232333888999999999998499899999999998617999899
Q gi|254780436|r 206 ISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRA 278 (298)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a 278 (298)
.+.......+...+..++.+.+...|...+..+|.-.+.|.-....-.+.|+.+.+...|++++.+.=.-..+
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 3688999999987651884356789887776385430279999998870477799999999998647786676
No 137
>pfam00515 TPR_1 Tetratricopeptide repeat.
Probab=97.30 E-value=6.4e-05 Score=43.56 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999999999997298522221111111111111
Q gi|254780436|r 69 PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY 102 (298)
Q Consensus 69 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (298)
+.+|+++|.+|..+|++++|+++|+++++++|++
T Consensus 1 ~~~~~~lG~~y~~~~~~~~A~~~~~~Al~l~p~~ 34 (34)
T pfam00515 1 AKALYNLGNAYFKLGKYDEAIEYYEKALELNPNN 34 (34)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9799998999999178999999999988439899
No 138
>KOG3824 consensus
Probab=97.25 E-value=0.00014 Score=41.77 Aligned_cols=65 Identities=28% Similarity=0.350 Sum_probs=38.6
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99729852222111111111111111121100000001122221111112222111111122222
Q gi|254780436|r 79 YGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGR 143 (298)
Q Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (298)
..+.|+.++|...|+.++.+.|+++......|.......+.-.|..++.+++.+.|.+..+..+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR 190 (472)
T KOG3824 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNR 190 (472)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHH
T ss_conf 88643468899999999830899779999976888851446766556420232179855877503
No 139
>PRK10866 outer membrane protein assembly complex subunit YfiO; Provisional
Probab=97.20 E-value=8e-05 Score=43.02 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=122.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998999999999997298522221111111111111111---21100000001122221111112222111111122222
Q gi|254780436|r 67 SDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKV---YANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGR 143 (298)
Q Consensus 67 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (298)
..+..++..|...+..|+|.+|++.|++.....|....+ ...++..+...+++..|...+.+.+...|.++.+....
T Consensus 30 ~~~~~~Y~~A~~~~~~~~y~~A~~~fe~l~~~yP~s~~A~qA~L~~ayayy~~~~y~~A~~~~~rFi~lyP~~~~v~Ya~ 109 (243)
T PRK10866 30 NPPNEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFMRLNPTHPNIDYVM 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 99999999999999878999999999999986899767899999999998730778999999999998678999738999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222211111111111211112222222222222222111111111222121111111122212222222222211111
Q gi|254780436|r 144 GNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKN 223 (298)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (298)
....... ... .......................+...+...+...|......- +.
T Consensus 110 Yl~gl~~----~~~-----------~~~~~~~~~~~~~~~rD~~~~~~A~~~f~~li~~yP~S~Ya~d---A~------- 164 (243)
T PRK10866 110 YMRGLTN----MAL-----------DDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYTTD---AT------- 164 (243)
T ss_pred HHHHHHH----HHC-----------CHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHH---HH-------
T ss_conf 9988987----740-----------1358888743256430769999999999999987899845899---99-------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 111222111223233388899999999999849989999999999861799---9899999999999974288874
Q gi|254780436|r 224 YDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR---YYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 224 ~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~---~~~a~~~la~i~~~lg~~~~~~ 296 (298)
.+.......-+.--...|.-|.+.|.|..|+.-++.+|+-.|+ .++|+.-|...+..||-...+-
T Consensus 165 --------~r~~~lrn~LA~~El~Va~fY~kr~~y~AAi~R~~~vi~~Yp~t~~~~eAL~~l~eaY~~Lgl~~~A~ 232 (243)
T PRK10866 165 --------KRLVFLKDRLAKYEYSVAEYYTKRGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAD 232 (243)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHH
T ss_conf --------99999999999999999999999265699999999999768999633999999999999869978999
No 140
>KOG0545 consensus
Probab=97.15 E-value=0.00081 Score=37.56 Aligned_cols=83 Identities=12% Similarity=0.099 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 2222222222111111112221112232--------333888----------9999999999984998999999999986
Q gi|254780436|r 209 DYYNGRGISYLATKNYDSALEDFKFAIN--------LDPKKA----------SFWFNGGMVYEMQGSYANAVKYYKKALS 270 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~--------~~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~kAl~ 270 (298)
......|..++..+++.+|...|..|+. ..|..+ ..+.|...|+...|+|-++++.....|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88987501466622177899999999999998874048998189999876337788677787448789999998899985
Q ss_pred HCCCCHHHHHHHHHHHHHHHH
Q ss_conf 179998999999999999742
Q gi|254780436|r 271 VDSRYYRAKNGILRISQDLSS 291 (298)
Q Consensus 271 l~P~~~~a~~~la~i~~~lg~ 291 (298)
.+|.|..|++..|+.....=|
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn 279 (329)
T KOG0545 259 HHPGNVKAYFRRAKAHAAVWN 279 (329)
T ss_pred CCCCHHHHHHHHHHHHHHHCC
T ss_conf 088508999998778775368
No 141
>PRK10941 putative transcriptional regulator; Provisional
Probab=97.08 E-value=0.00092 Score=37.27 Aligned_cols=56 Identities=7% Similarity=-0.108 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999999984998999999999986179998999999999999742888743
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVN 297 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~n 297 (298)
...+.|+=.+|...++++.|+.+-+..+.++|+++.-+.-.|.++..||..-.++.
T Consensus 181 ~RmL~nLK~~~~~e~~~~~AL~~~e~lL~l~Pddp~EiRDRGli~~qL~c~~~Al~ 236 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFNPEDPYEIRDRGLIYAQLDCEHVALS 236 (269)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999999851149999999999986296997999999999998499489999
No 142
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.06 E-value=0.0026 Score=34.79 Aligned_cols=59 Identities=17% Similarity=0.077 Sum_probs=38.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999999972985222211111111111111112110000000112222111111222
Q gi|254780436|r 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTAL 130 (298)
Q Consensus 72 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 130 (298)
+-..+..+...|++++|.+.-+++++++|.+..+...++.++...++..+.+.......
T Consensus 117 ~gm~AF~leE~g~~~~Ae~~a~~al~~np~d~wa~HAvAHv~~~~g~~~eG~~~l~~~~ 175 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWR 175 (355)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999985889999999999996399993799999999998388788999998517
No 143
>KOG1915 consensus
Probab=97.04 E-value=0.00018 Score=41.08 Aligned_cols=74 Identities=18% Similarity=0.086 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 111111122211122323338889999999999984998999999999986179998999999999999742888
Q gi|254780436|r 220 ATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVN 294 (298)
Q Consensus 220 ~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~ 294 (298)
.+.+...|...+-.++...|.+- .+-..-.+-.++++++.....|++-|+-.|.+..+|..-|.+-..||++.-
T Consensus 416 Rq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdR 489 (677)
T KOG1915 416 RQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDR 489 (677)
T ss_pred HHCCCHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87032789999888743497166-777787899987657899999999981692765899989999987400788
No 144
>KOG1915 consensus
Probab=97.04 E-value=0.0002 Score=40.84 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 11111111222111223233388899999999999849989999999999861
Q gi|254780436|r 219 LATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSV 271 (298)
Q Consensus 219 ~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l 271 (298)
...++++.+...+.+-++-.|.+..+|...|..-..+|+.+.|...|+-|++-
T Consensus 448 lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915 448 LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98765789999999998169276589998999998740078888999998338
No 145
>KOG4340 consensus
Probab=97.03 E-value=0.00029 Score=39.98 Aligned_cols=55 Identities=9% Similarity=0.092 Sum_probs=35.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 9999819989999999999981689989999999999972985222211111111
Q gi|254780436|r 43 SSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALD 97 (298)
Q Consensus 43 ~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 97 (298)
-.+++.+++++|++.|+.+++..--++..-++++.++++.|++..|+++....++
T Consensus 152 CllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIie 206 (459)
T KOG4340 152 CLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIE 206 (459)
T ss_pred HHEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2000165489999999998730576727899999998731207789999999997
No 146
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.86 E-value=0.00028 Score=40.09 Aligned_cols=34 Identities=32% Similarity=0.510 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8999999999997298522221111111111111
Q gi|254780436|r 69 PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY 102 (298)
Q Consensus 69 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (298)
+.+|.++|.+|..+|++++|+.+|+++++++|++
T Consensus 1 ~~~~~~lg~~y~~~~~~~~Ai~~~~~al~~~p~~ 34 (34)
T smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf 9289998999998236999999999977359999
No 147
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.69 E-value=0.0076 Score=32.29 Aligned_cols=69 Identities=17% Similarity=0.226 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 1111111222111223233388899999999999849989999999999861799989999999999997
Q gi|254780436|r 220 ATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDL 289 (298)
Q Consensus 220 ~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~l 289 (298)
..++...+......++...|. +..++..+.++.+.|+..+|+..+..|+.+.|+++.+...+|..+-+-
T Consensus 588 ~~g~~~~Al~~~r~al~~ap~-a~~~~A~~~~~~Q~~d~~qa~~~LAeAv~lepd~~~y~A~lGy~la~~ 656 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred CCCCCHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
T ss_conf 038738788889999860800-466899999999736807899999999817999854115677786139
No 148
>KOG2796 consensus
Probab=96.58 E-value=0.00041 Score=39.17 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=94.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCCCHHHHHHHHHHH
Q ss_conf 2221111111112221211111111222122222222222111111112221112232------3338889999999999
Q gi|254780436|r 179 RALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAIN------LDPKKASFWFNGGMVY 252 (298)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~------~~p~~~~~~~~lg~~~ 252 (298)
........+.+..........+...++..+.....++.+....|+...+...++..-+ ....+..+..+.+.++
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHHCCHHHHEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEE
T ss_conf 99998363045110999999986387306799999878888604388899899999987614323404678876344202
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 984998999999999986179998999999999999742888743
Q gi|254780436|r 253 EMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVN 297 (298)
Q Consensus 253 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~n 297 (298)
...+++.+|...|.+.+..||.++.|.++.|.++.-+|++.+++.
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796 263 LGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred ECCCCHHHHHHHHHHCCCCCCCCHHHHCHHHHHHHHHHHHHHHHH
T ss_conf 213335999998850422489870220519999999877889999
No 149
>KOG1070 consensus
Probab=96.51 E-value=0.0076 Score=32.27 Aligned_cols=197 Identities=13% Similarity=0.088 Sum_probs=89.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCC-CCC----CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 52222111111111111111121100000001122221111112222111-111----1222222222221111111111
Q gi|254780436|r 85 FEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINP-DYD----VAYIGRGNIYRDERYSDLQKAF 159 (298)
Q Consensus 85 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~ 159 (298)
-.+..++|++.+..+|+....|...........+.+.|.....+++.... ... ..|..+ .......+..+...
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~--lNlEn~yG~eesl~ 1517 (1710)
T KOG1070 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAY--LNLENAYGTEESLK 1517 (1710)
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHHHHHHCCHHHHH
T ss_conf 7767788999986099840289999998850245677899999986117864167777789999--86787527689999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12111122222222222222221111111112221211111111222122222222222111111112221112232333
Q gi|254780436|r 160 ADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDP 239 (298)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p 239 (298)
..+..+..... ....+..+...+........+.+.+........ .....+...+..+....+.+.|...+.+|++.-|
T Consensus 1518 kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070 1518 KVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHCC-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999987433-688999988799876231048999999999865-3256899999998514478899999999986465
Q ss_pred C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 8--889999999999984998999999999986179998999999999
Q gi|254780436|r 240 K--KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRI 285 (298)
Q Consensus 240 ~--~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i 285 (298)
. +.+....-+..-++.|+-+.+...|+-.+.-+|+-.+.|.-....
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 023688999999987651884356789887776385430279999998
No 150
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.41 E-value=0.0045 Score=33.54 Aligned_cols=89 Identities=18% Similarity=0.131 Sum_probs=57.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCHHHCCCCCC
Q ss_conf 9998199899999999999816899899999999999729852222111111111111----111121100000001122
Q gi|254780436|r 44 SLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPR----YYKVYANRALIRYKMGDV 119 (298)
Q Consensus 44 ~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~~~~~~~~ 119 (298)
.+...+.+.+|.+.-+++++++|+++.+..-++.++...|+.++++..++....-... ....+...+..+...++.
T Consensus 123 ~leE~g~~~~Ae~~a~~al~~np~d~wa~HAvAHv~~~~g~~~eG~~~l~~~~~~w~~~~~l~~H~wWH~AL~~Le~g~~ 202 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCH
T ss_conf 99985889999999999996399993799999999998388788999998517525778858989999999998877898
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 2211111122221
Q gi|254780436|r 120 PMAIRDYGTALKI 132 (298)
Q Consensus 120 ~~a~~~~~~~~~~ 132 (298)
+.+...+...+..
T Consensus 203 ~~~l~iyD~~i~~ 215 (355)
T cd05804 203 EAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHHCC
T ss_conf 8999998887445
No 151
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.012 Score=31.16 Aligned_cols=74 Identities=15% Similarity=0.107 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 22222222211111111222111223233388899999999999849989999999999861799989999999
Q gi|254780436|r 210 YYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGIL 283 (298)
Q Consensus 210 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la 283 (298)
....+...+...++.+.|.......+..+|.++.-+.-+|.+|.++|-+.-|+++++..++.-|+.+.+-.-.+
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999998405699999999987518998443167089998648844569999999984999357899999
No 152
>KOG3081 consensus
Probab=96.36 E-value=0.028 Score=29.21 Aligned_cols=172 Identities=16% Similarity=0.133 Sum_probs=98.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98999999999997298522221111111111111111211000000011222211111122221111111222222222
Q gi|254780436|r 68 DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIY 147 (298)
Q Consensus 68 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
+......-|.+|..-|++++|+....+... .........+...+.+.+.+.....+....+....- ..++..+
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~~~-----lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tL--tQLA~aw 179 (299)
T KOG3081 107 NLIDLLLAAIIYMHDGDFDEALKALHLGEN-----LEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATL--TQLAQAW 179 (299)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHH
T ss_conf 389999766875427886899999852124-----889998779999878999999999999711357899--9999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22111111111112111122222222222222221111111112221211111111222122222222222111111112
Q gi|254780436|r 148 RDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSA 227 (298)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 227 (298)
............+...+.......++ .+......+.+...++++++|
T Consensus 180 --------------------------------v~la~ggek~qdAfyifeE~s~k~~~-T~~llnG~Av~~l~~~~~eeA 226 (299)
T KOG3081 180 --------------------------------VKLATGGEKIQDAFYIFEELSEKTPP-TPLLLNGQAVCHLQLGRYEEA 226 (299)
T ss_pred --------------------------------HHHHCCCHHHHHHHHHHHHHHCCCCC-CHHHHCCHHHHHHHHCCHHHH
T ss_conf --------------------------------99960632454689999998353599-768870699998971699999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHHCCCCHHHH
Q ss_conf 2211122323338889999999999984998999999999-986179998999
Q gi|254780436|r 228 LEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKK-ALSVDSRYYRAK 279 (298)
Q Consensus 228 ~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k-Al~l~P~~~~a~ 279 (298)
...+..++..++++++.+.|+-.+-..+|+-.++.+-+-. ....+|+++-..
T Consensus 227 e~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081 227 ESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999998534787899999999999818991778889999874087653778
No 153
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.23 E-value=0.0098 Score=31.68 Aligned_cols=52 Identities=12% Similarity=0.038 Sum_probs=24.5
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9998199899999999999816899899999999999729852222111111
Q gi|254780436|r 44 SLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSA 95 (298)
Q Consensus 44 ~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 95 (298)
..-+.+++.+|+..++.++.+-|++..+...++.+|.+.|++.+|....++.
T Consensus 53 ~e~k~~~~~~a~re~~h~l~~vP~n~~~~~~Laea~~h~g~~~eA~all~~~ 104 (987)
T PRK09782 53 KAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQ 104 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHC
T ss_conf 9987154888999999999868896199999999999838938999999861
No 154
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.23 E-value=0.0028 Score=34.66 Aligned_cols=63 Identities=17% Similarity=0.212 Sum_probs=56.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999819989999999999981689989999999999972985222211111111111111112
Q gi|254780436|r 44 SLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVY 106 (298)
Q Consensus 44 ~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (298)
.....++.+.+.+.|.+++++-|+....|+.+|....+.|+++.|...|++.++++|......
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ga 66 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGA 66 (287)
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCCH
T ss_conf 010367848999999877504704443455402366630418999999998870796212223
No 155
>KOG2471 consensus
Probab=96.23 E-value=0.0025 Score=34.89 Aligned_cols=53 Identities=15% Similarity=0.077 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999984998999999999986179--9989999999999997428887
Q gi|254780436|r 243 SFWFNGGMVYEMQGSYANAVKYYKKALSVDS--RYYRAKNGILRISQDLSSTVNE 295 (298)
Q Consensus 243 ~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P--~~~~a~~~la~i~~~lg~~~~~ 295 (298)
..++++|.++--+|++++|...+..|..+-| .+.+|..---.+--.+|++-.+
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~a 674 (696)
T KOG2471 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDA 674 (696)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH
T ss_conf 7999899999872441789999998887631023377899999999862887106
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=96.22 E-value=0.0028 Score=34.64 Aligned_cols=55 Identities=18% Similarity=0.124 Sum_probs=27.5
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 1112221112232333888999999999998499899999999998617999899
Q gi|254780436|r 224 YDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRA 278 (298)
Q Consensus 224 ~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a 278 (298)
..-+-..|++|--..|+.+..++..|+.++..|+.++|..+.++.++++|+-..|
T Consensus 354 ~~Vs~~LFeQA~ll~p~s~di~yy~~~~~F~~g~leea~~~I~ksL~leP~r~~a 408 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHCC
T ss_conf 6698999987414699863312133353563374088999999986149401002
No 157
>pfam07719 TPR_2 Tetratricopeptide repeat. This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Probab=96.20 E-value=0.00091 Score=37.28 Aligned_cols=33 Identities=36% Similarity=0.600 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999999999997298522221111111111111
Q gi|254780436|r 70 EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY 102 (298)
Q Consensus 70 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (298)
.+|..+|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 34 (34)
T pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34 (34)
T ss_pred HHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCC
T ss_conf 168750148762166999999999977269999
No 158
>KOG2053 consensus
Probab=96.08 E-value=0.016 Score=30.55 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 99999999999981998999999999998168998999999999997298522221111111111111111211000000
Q gi|254780436|r 35 VILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114 (298)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (298)
.......+-.+++.+...+|..+++..-..-|++...+..+-.+|..+|++++|...|++++..+|. ......+...+.
T Consensus 43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayv 121 (932)
T KOG2053 43 LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYV 121 (932)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_conf 7999999999998158646788875130479985689999999999874256899999998710884-889999999999
Q ss_pred CC
Q ss_conf 01
Q gi|254780436|r 115 KM 116 (298)
Q Consensus 115 ~~ 116 (298)
..
T Consensus 122 R~ 123 (932)
T KOG2053 122 RE 123 (932)
T ss_pred HH
T ss_conf 98
No 159
>KOG1310 consensus
Probab=95.99 E-value=0.012 Score=31.31 Aligned_cols=72 Identities=13% Similarity=0.037 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7231999999999999819---98999999999998168998999999999997298522221111111111111
Q gi|254780436|r 31 LVVSVILLIEGCSSLFPSM---GRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY 102 (298)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~---~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (298)
.......+.+.+..+.+.+ .-..|+.+...++++||....+++.++.++..++++.+|+.+...+....|.+
T Consensus 404 ~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310 404 VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 550267887689999864114307899876776256783888889999999999766877531289875169356
No 160
>pfam03704 BTAD Bacterial transcriptional activator domain. Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Probab=95.89 E-value=0.033 Score=28.81 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=21.0
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 819989999999999981689989999999999972985222211111
Q gi|254780436|r 47 PSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQS 94 (298)
Q Consensus 47 ~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 94 (298)
..+++.+|+..+.+++..+|-+-.+|..+-.+|...|+-.+|+..|++
T Consensus 74 ~~g~~~~a~~~~~~~l~~dPl~E~~~~~Lm~a~~~~G~~~~Al~~Y~~ 121 (146)
T pfam03704 74 RLGRHEEALAELRALVALHPLRERLHRQLMRALYRSGRQAEALRVYRR 121 (146)
T ss_pred HCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 859830219999999986887429999999999988999999999999
No 161
>pfam06552 TOM20_plant Plant specific mitochondrial import receptor subunit TOM20. This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesized in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria.
Probab=95.89 E-value=0.0037 Score=33.96 Aligned_cols=57 Identities=23% Similarity=0.271 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-----------CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999999999816899899999999999729-----------852222111111111111111121
Q gi|254780436|r 51 RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNG-----------DFEKALLDFQSALDLNPRYYKVYA 107 (298)
Q Consensus 51 ~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~ 107 (298)
.++||..+++||.+||.-.+++--+|.++...| .|++|..+|+++++-+|.+.....
T Consensus 51 i~dAisKlEeAL~InP~khdalWclGNA~TS~~Fl~pD~~~A~~~F~kA~~~Fq~AvdeeP~NelYrK 118 (186)
T pfam06552 51 IQDAISKLEEALVINPKKHDALWCIGNAYTSHAFLTPDQTEAKDNFDKATQFFQQAVDEQPDNDLYRK 118 (186)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999999998713988753333005411015131787899998899999999998634986189999
No 162
>KOG4814 consensus
Probab=95.84 E-value=0.0056 Score=33.01 Aligned_cols=93 Identities=15% Similarity=0.015 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999998199899999999999816899------8999999999997298522221111111111111111211
Q gi|254780436|r 35 VILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSD------PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYAN 108 (298)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (298)
..++|+.+...|+.++|..+++.|...++.-|.+ +....++..||..+.+.++|.++++.|-+.+|..+.....
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 99999888877537768999999999887447504657899999999999825998877999999998607323889999
Q ss_pred CCHHHCCCCCCCCCCCCCC
Q ss_conf 0000000112222111111
Q gi|254780436|r 109 RALIRYKMGDVPMAIRDYG 127 (298)
Q Consensus 109 ~~~~~~~~~~~~~a~~~~~ 127 (298)
........+.-.+|.....
T Consensus 434 ~~~~~~~E~~Se~AL~~~~ 452 (872)
T KOG4814 434 MLQSFLAEDKSEEALTCLQ 452 (872)
T ss_pred HHHHHHHHCCHHHHHHHHH
T ss_conf 9999998322177899999
No 163
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.83 E-value=0.0042 Score=33.68 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=111.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9899999999999729852222111111111111111---1211000000011222211111122221111111222222
Q gi|254780436|r 68 DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK---VYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRG 144 (298)
Q Consensus 68 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (298)
-+..+++-|..-+..|++++|+..|+......|..+. +...++......+++..|+......+...|.+..+-....
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~~~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 89999999999986378899999999998709998112899999999988135589999999999987899987169999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222111111111112111122222222222222221111111112221211111111222122222222222111111
Q gi|254780436|r 145 NIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNY 224 (298)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (298)
..... .................+...+...+...|+........ ..+
T Consensus 113 lkgLs-------------------------~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~-----~~i--- 159 (254)
T COG4105 113 LKGLS-------------------------YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK-----ARI--- 159 (254)
T ss_pred HHHHH-------------------------HHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHH-----HHH---
T ss_conf 99998-------------------------752677544477999999999999998788970235599-----999---
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHHHHH
Q ss_conf 11222111223233388899999999999849989999999999861799989999---99999999742888
Q gi|254780436|r 225 DSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKN---GILRISQDLSSTVN 294 (298)
Q Consensus 225 ~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~---~la~i~~~lg~~~~ 294 (298)
......-+.-=...|..|.+.|.+..|+.-++..++--|+...... -|...+..+|-+..
T Consensus 160 ----------~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~ 222 (254)
T COG4105 160 ----------VKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDE 222 (254)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf ----------999999889999999999990576999999999987145552047789999999998287278
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.82 E-value=0.03 Score=29.05 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=80.8
Q ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 819989999999999981689989999999999972985222211111111-1111111121100000001122221111
Q gi|254780436|r 47 PSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALD-LNPRYYKVYANRALIRYKMGDVPMAIRD 125 (298)
Q Consensus 47 ~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 125 (298)
+..+-+.++....+.++.-|.... ...+|....++|++.+|...|++++. +.-.++.....++......++...+...
T Consensus 68 q~ldP~R~~Rea~~~~~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 68 QKLDPERHLREATEELAIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HHCCHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 862915899999988764613788-9999999998410566688999985465679889998889888861658888889
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11222211111112222222222211111111111211112222222222222222111111111222121111111122
Q gi|254780436|r 126 YGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSS 205 (298)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (298)
.+..... +| ..
T Consensus 147 Le~l~e~------------------------------------~p---------------------------------a~ 157 (251)
T COG4700 147 LEDLMEY------------------------------------NP---------------------------------AF 157 (251)
T ss_pred HHHHHHC------------------------------------CC---------------------------------CC
T ss_conf 9998605------------------------------------97---------------------------------65
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH----HHHHHHCCCCH
Q ss_conf 212222222222211111111222111223233388899999999999849989999999----99986179998
Q gi|254780436|r 206 ISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYY----KKALSVDSRYY 276 (298)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~----~kAl~l~P~~~ 276 (298)
..+......+..+...+.+.++...|+.++...|. +.+....|..+.++|+.++|..-+ +.+..-.|.+.
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r 231 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR 231 (251)
T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 89972589999998458805589999999985887-778989999999712216788879999999976046678
No 165
>KOG2471 consensus
Probab=95.79 E-value=0.032 Score=28.90 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=55.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHH-HHHCCC--------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-C--------CC-
Q ss_conf 9999999819989999999999-981689--------989999999999972985222211111111-1--------11-
Q gi|254780436|r 40 EGCSSLFPSMGRRVNIDSLTAV-IRAHPS--------DPEGYNVRGVVYGMNGDFEKALLDFQSALD-L--------NP- 100 (298)
Q Consensus 40 ~~~~~~~~~~~~~~Ai~~~~~a-l~~~P~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~--------~~- 100 (298)
-.....|..+++.+|.+.+... |...|. ....|+|+|.+++.+|.|.-++.+|.++++ . .|
T Consensus 245 LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~ 324 (696)
T KOG2471 245 LKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPA 324 (696)
T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 98779988535499999997445312567655600423102157334752012578889999999999999996457888
Q ss_pred --------CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------11111211000000011222211111122221111111222222222
Q gi|254780436|r 101 --------RYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIY 147 (298)
Q Consensus 101 --------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
......++.|..+...++...|..++..+......++..|..++.+.
T Consensus 325 ~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471 325 KTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred CCEEHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 6033210530246774237998638907999999999999821838999999999
No 166
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.79 E-value=0.004 Score=33.78 Aligned_cols=65 Identities=12% Similarity=0.007 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 999989999999723199999999999-98199899999999999816899899999999999729852
Q gi|254780436|r 19 SKRRGYYSLLSVLVVSVILLIEGCSSL-FPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFE 86 (298)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 86 (298)
..+.+.+..+..+.+.-..-|-..+.+ .+.+....|...|.++++++|.+... .+.-+..+|+-+
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g---aa~kLa~lg~~e 77 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG---AALKLAVLGRGE 77 (287)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCCCCCCCCC---HHHHHHHHCCCC
T ss_conf 899999987750470444345540236663041899999999887079621222---356577516888
No 167
>KOG1941 consensus
Probab=95.73 E-value=0.014 Score=30.82 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 222221111111122211122323------3388899999999999849989999999999861
Q gi|254780436|r 214 RGISYLATKNYDSALEDFKFAINL------DPKKASFWFNGGMVYEMQGSYANAVKYYKKALSV 271 (298)
Q Consensus 214 ~~~~~~~~~~~~~a~~~~~~a~~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l 271 (298)
++..+..+|....|.+.++++.++ .+-.+.....+|.+|...|+.+.|..-|++|...
T Consensus 212 maValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941 212 MAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999998412113999999999999984777988999999999988613076689999999989
No 168
>KOG0546 consensus
Probab=95.68 E-value=0.033 Score=28.81 Aligned_cols=83 Identities=16% Similarity=0.116 Sum_probs=70.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 22222222221111111122211122323338889999999999984998999999999986179998999999999999
Q gi|254780436|r 209 DYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQD 288 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~ 288 (298)
......+.+....+.+..+......++..++....+++.+|..+..+.++++|+++++.+....|++......+..+.+.
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred CCCCCHHHHCCCCCCCCCCEECCCCCCCCCHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 00023677512136777623216400236811182888877688764345666778887542285449999999986657
Q ss_pred HHH
Q ss_conf 742
Q gi|254780436|r 289 LSS 291 (298)
Q Consensus 289 lg~ 291 (298)
...
T Consensus 356 ~~~ 358 (372)
T KOG0546 356 KKQ 358 (372)
T ss_pred HHH
T ss_conf 887
No 169
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.017 Score=30.37 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHH
Q ss_conf 111223233388899999999999849989999999999861799--989999999999997428
Q gi|254780436|r 230 DFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR--YYRAKNGILRISQDLSST 292 (298)
Q Consensus 230 ~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~--~~~a~~~la~i~~~lg~~ 292 (298)
.+......+|++.++-+.++..+...|+.++|.+.+-.-+..|-+ +..++..|-.+..-+|..
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99999870999889999999999973887999999999987503443768999999999963889
No 170
>KOG3617 consensus
Probab=95.56 E-value=0.011 Score=31.46 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9999999999849989999999999
Q gi|254780436|r 244 FWFNGGMVYEMQGSYANAVKYYKKA 268 (298)
Q Consensus 244 ~~~~lg~~~~~~g~~~~A~~~~~kA 268 (298)
++..+|.++.++|.|..|-+-|.+|
T Consensus 1147 vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617 1147 VLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999646067788887651
No 171
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=95.50 E-value=0.0089 Score=31.90 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 998999999999998168998999999999997298522221111111
Q gi|254780436|r 49 MGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSAL 96 (298)
Q Consensus 49 ~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 96 (298)
..-+++...+++.++.+-++|+....+|..|..- +.++|+.+|.+|+
T Consensus 131 ~~n~el~~iwerlv~~D~~~~e~~~~~a~~~e~~-d~~kai~y~k~A~ 177 (906)
T PRK06330 131 KKNKELKVIWERLVKADRDNPEIVKKLATSYEEE-DKEKSITYLKKAI 177 (906)
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CHHHHHHHHHHHH
T ss_conf 5774389999999971344668999998888740-2688999999999
No 172
>pfam06552 TOM20_plant Plant specific mitochondrial import receptor subunit TOM20. This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesized in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria.
Probab=95.28 E-value=0.0042 Score=33.67 Aligned_cols=88 Identities=18% Similarity=0.176 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC----------CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC---
Q ss_conf 899999999999816899899999999999729852----------2221111111111111111211000000011---
Q gi|254780436|r 51 RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFE----------KALLDFQSALDLNPRYYKVYANRALIRYKMG--- 117 (298)
Q Consensus 51 ~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~----------~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~--- 117 (298)
++.|-+.-+..-+.||.+++.+..-|-++..+-+|+ +|+.-++.++.++|....+...+|..+...+
T Consensus 7 FE~aRk~AE~~y~~nP~DadnLtRWGGALLELsqFq~~~ds~~Mi~dAisKlEeAL~InP~khdalWclGNA~TS~~Fl~ 86 (186)
T pfam06552 7 FEHARKSAEATYKKNPLDADNLTRWGGALLELSQFQSVPDAKKMIQDAISKLEEALVINPKKHDALWCIGNAYTSHAFLT 86 (186)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCCCCCCC
T ss_conf 99999999998852984588898888999999861264479999999999999987139887533330054110151317
Q ss_pred --------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------222211111122221111111
Q gi|254780436|r 118 --------DVPMAIRDYGTALKINPDYDV 138 (298)
Q Consensus 118 --------~~~~a~~~~~~~~~~~~~~~~ 138 (298)
.+++|..+++++....|.+..
T Consensus 87 pD~~~A~~~F~kA~~~Fq~AvdeeP~Nel 115 (186)
T pfam06552 87 PDQTEAKDNFDKATQFFQQAVDEQPDNDL 115 (186)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 87899998899999999998634986189
No 173
>KOG0530 consensus
Probab=95.26 E-value=0.015 Score=30.71 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CCCCCCCC
Q ss_conf 79999899999997231999999999999819--9899999999999816899899999999999729852-22211111
Q gi|254780436|r 18 SSKRRGYYSLLSVLVVSVILLIEGCSSLFPSM--GRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFE-KALLDFQS 94 (298)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~-~A~~~~~~ 94 (298)
+.++......+..+.+.....|.--..+.+.. ...+.++.++++++-+|.+-..|..|-.+...+|+.. .-++....
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~ 138 (318)
T KOG0530 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKL 138 (318)
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 87899989999972854214899999999986888999999999998738652147799999999806941103789999
Q ss_pred CCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111111211000000011222211111122221111111222222
Q gi|254780436|r 95 ALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRG 144 (298)
Q Consensus 95 al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 144 (298)
++..+.++..++..+..+....+.++.........+..+..+..++....
T Consensus 139 ~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ry 188 (318)
T KOG0530 139 MLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRY 188 (318)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHEEE
T ss_conf 97111110026689999999875078899999999987620220222025
No 174
>KOG2396 consensus
Probab=95.13 E-value=0.077 Score=26.83 Aligned_cols=90 Identities=14% Similarity=0.050 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCC
Q ss_conf 9998999999972319999999999998199-8999999999998168998999999999997298-5222211111111
Q gi|254780436|r 20 KRRGYYSLLSVLVVSVILLIEGCSSLFPSMG-RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGD-FEKALLDFQSALD 97 (298)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~ 97 (298)
+-...|..+..-..+..-+|..-..+-+..+ +.+--..|.+++..+|+++..|..-+.-.+..+. .+.|-..|.+++.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999997567777899999999998422468999999999858998306886655687503235899999997764
Q ss_pred CCCCCCCCCCCC
Q ss_conf 111111112110
Q gi|254780436|r 98 LNPRYYKVYANR 109 (298)
Q Consensus 98 ~~~~~~~~~~~~ 109 (298)
.+|+.+..+...
T Consensus 169 ~npdsp~Lw~ey 180 (568)
T KOG2396 169 FNPDSPKLWKEY 180 (568)
T ss_pred CCCCCHHHHHHH
T ss_conf 189976899999
No 175
>KOG1550 consensus
Probab=95.02 E-value=0.0038 Score=33.90 Aligned_cols=82 Identities=22% Similarity=0.138 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHH-----HCCCCHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 1998999999999998-----16899899999999999729-----8522221111111111111111211000000011
Q gi|254780436|r 48 SMGRRVNIDSLTAVIR-----AHPSDPEGYNVRGVVYGMNG-----DFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117 (298)
Q Consensus 48 ~~~~~~Ai~~~~~al~-----~~P~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 117 (298)
.++.+.|+..+..+.+ ..-.++.+.+.+|.+|.+-. +.+.|+..|.++-+.. ++...+.+|.++....
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT 339 (552)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHCCC
T ss_conf 66899999999999886256665047422479999998189875124999999999998559--9048999889876276
Q ss_pred ---CCCCCCCCCCCCCC
Q ss_conf ---22221111112222
Q gi|254780436|r 118 ---DVPMAIRDYGTALK 131 (298)
Q Consensus 118 ---~~~~a~~~~~~~~~ 131 (298)
+...|...+..+..
T Consensus 340 ~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550 340 KERDYRRAFEYYSLAAK 356 (552)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 32138899999999997
No 176
>KOG2610 consensus
Probab=94.96 E-value=0.073 Score=26.96 Aligned_cols=95 Identities=15% Similarity=-0.045 Sum_probs=47.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCC---CCCCCCCHHHCCCCCC
Q ss_conf 9998199899999999999816899899999999999729852222111111111-11111---1121100000001122
Q gi|254780436|r 44 SLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDL-NPRYY---KVYANRALIRYKMGDV 119 (298)
Q Consensus 44 ~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~---~~~~~~~~~~~~~~~~ 119 (298)
.++-.|+..+|.....+.++-.|.+.-++..--.+++-+|+...-...+++.+-. +++.+ ...-..+..+...|.+
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 76335664177888999987585035544544467874141442145799843345899857899888998667872550
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q ss_conf 2211111122221111111
Q gi|254780436|r 120 PMAIRDYGTALKINPDYDV 138 (298)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~ 138 (298)
..|.....+++.+++.+..
T Consensus 192 ~dAEk~A~ralqiN~~D~W 210 (491)
T KOG2610 192 DDAEKQADRALQINRFDCW 210 (491)
T ss_pred HHHHHHHHHHCCCCCCCHH
T ss_conf 2699999863147874168
No 177
>KOG4507 consensus
Probab=94.85 E-value=0.014 Score=30.79 Aligned_cols=99 Identities=14% Similarity=0.053 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 72319999999999998-19989999999999981689989--9999999999729852222111111111111111121
Q gi|254780436|r 31 LVVSVILLIEGCSSLFP-SMGRRVNIDSLTAVIRAHPSDPE--GYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYA 107 (298)
Q Consensus 31 ~~~~~~~~~~~~~~~~~-~~~~~~Ai~~~~~al~~~P~~~~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (298)
-.+....+...+..+.+ +|+-.+|+.|+..++-..|...+ ++..+|.++.+.|..-+|--.+..|++-.|.....++
T Consensus 208 ~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y 287 (886)
T KOG4507 208 KNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYY 287 (886)
T ss_pred CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCC
T ss_conf 18436889988999999738854445789987651783001005767999998712421113331134057753356620
Q ss_pred CCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 1000000011222211111122
Q gi|254780436|r 108 NRALIRYKMGDVPMAIRDYGTA 129 (298)
Q Consensus 108 ~~~~~~~~~~~~~~a~~~~~~~ 129 (298)
.++.++...+.+......+..+
T Consensus 288 ~l~~i~aml~~~N~S~~~ydha 309 (886)
T KOG4507 288 TLGNIYAMLGEYNHSVLCYDHA 309 (886)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1899999986620266535666
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.64 E-value=0.019 Score=30.09 Aligned_cols=124 Identities=10% Similarity=-0.026 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 2597999989999999723199999999999981998999999999998-168998999999999997298522221111
Q gi|254780436|r 15 FLRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIR-AHPSDPEGYNVRGVVYGMNGDFEKALLDFQ 93 (298)
Q Consensus 15 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~-~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 93 (298)
.+.|++...-.......-+.+.--.-.+..+...|.+.||...|.+++. +--.++..+..++.+.+.++++..|...++
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 69 KLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred HCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 62915899999988764613788999999999841056668899998546567988999888988886165888888999
Q ss_pred CCCCCCCCC--CCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 111111111--111211000000011222211111122221111111
Q gi|254780436|r 94 SALDLNPRY--YKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDV 138 (298)
Q Consensus 94 ~al~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 138 (298)
+..+.+|.. +......+..+...+.+..+...+..++...|....
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~a 195 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQA 195 (251)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 98605976589972589999998458805589999999985887778
No 179
>KOG1310 consensus
Probab=94.61 E-value=0.015 Score=30.76 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 22221111111122211122323338889999999999984---998999999999986179998999999999999742
Q gi|254780436|r 215 GISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQ---GSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSS 291 (298)
Q Consensus 215 ~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~ 291 (298)
+.-.+.......++..+..++...|.....+.+++.++++. |+.-.|+.+...|+++||....|+..|++.+..|+.
T Consensus 381 gnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310 381 GNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 65310368887789998877664550267887689999864114307899876776256783888889999999999766
Q ss_pred HHHHH
Q ss_conf 88874
Q gi|254780436|r 292 TVNEV 296 (298)
Q Consensus 292 ~~~~~ 296 (298)
-.+++
T Consensus 461 ~~eal 465 (758)
T KOG1310 461 YLEAL 465 (758)
T ss_pred HHHHH
T ss_conf 87753
No 180
>pfam03704 BTAD Bacterial transcriptional activator domain. Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Probab=94.59 E-value=0.075 Score=26.89 Aligned_cols=59 Identities=20% Similarity=0.198 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999999997298522221111111111111111211000000011222211111122
Q gi|254780436|r 71 GYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTA 129 (298)
Q Consensus 71 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 129 (298)
++..++..+...|++++|+...++++..+|.....+..+..++...|+...+...+...
T Consensus 64 a~~~l~~~~~~~g~~~~a~~~~~~~l~~dPl~E~~~~~Lm~a~~~~G~~~~Al~~Y~~~ 122 (146)
T pfam03704 64 ALERRIEADLRLGRHEEALAELRALVALHPLRERLHRQLMRALYRSGRQAEALRVYRRL 122 (146)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999988598302199999999868874299999999999889999999999999
No 181
>KOG3364 consensus
Probab=94.56 E-value=0.1 Score=26.16 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 8999999999998499899999999998617999899999999999
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~ 287 (298)
-+..|.++..+.++|+|++|+.+.+..++.+|+|.+|..--..|..
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~ied 116 (149)
T KOG3364 71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETIED 116 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 1321356777888865899999999999608770789999999999
No 182
>KOG1550 consensus
Probab=94.54 E-value=0.017 Score=30.37 Aligned_cols=225 Identities=19% Similarity=0.151 Sum_probs=94.3
Q ss_pred HHHHHHHHHCC------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999819------9899999999999816899899999999999729---85222211111111111111112110
Q gi|254780436|r 39 IEGCSSLFPSM------GRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNG---DFEKALLDFQSALDLNPRYYKVYANR 109 (298)
Q Consensus 39 ~~~~~~~~~~~------~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (298)
....+..+..+ ++..|+..|.++-+. .++.+.+.+|.+|..-. ++..|..+|..|... .+..+...+
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~l 366 (552)
T KOG1550 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRL 366 (552)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
T ss_conf 47999999818987512499999999999855--99048999889876276321388999999999975--998999999
Q ss_pred CHHHCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCC
Q ss_conf 0000001----12222111111222211111112222222222211111111111211112222222----222222222
Q gi|254780436|r 110 ALIRYKM----GDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSD----GRAWYGRAL 181 (298)
Q Consensus 110 ~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 181 (298)
+.++... .+...+...+.++..... ..+...++..+.... .....+.............. .........
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~ 443 (552)
T KOG1550 367 ALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSE 443 (552)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 99997477868877899999999998278--867999999998535-652278999999999661056665999997501
Q ss_pred CCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 11111----1111222121111111122212222222222211----111111222111223233388899999999999
Q gi|254780436|r 182 VYQMR----GEYEKSIEDFSQAISLYSSISPDYYNGRGISYLA----TKNYDSALEDFKFAINLDPKKASFWFNGGMVYE 253 (298)
Q Consensus 182 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~ 253 (298)
..... .....+....... ...........++..+.. ..++..+...+..+.... +...+++|.++.
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~a---~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e 517 (552)
T KOG1550 444 EDLFSRGVISTLERAFSLYSRA---AAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHE 517 (552)
T ss_pred CCCCCCCCCCHHHHHHHHHHHH---HHCCCHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHH---HHHHHCCHHHHH
T ss_conf 3445666421078999989887---6425715665205555546887999648999999986652---586733023876
Q ss_pred H---CCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 8---4998999999999986179998
Q gi|254780436|r 254 M---QGSYANAVKYYKKALSVDSRYY 276 (298)
Q Consensus 254 ~---~g~~~~A~~~~~kAl~l~P~~~ 276 (298)
. ..+...|..+|.++.+.++...
T Consensus 518 ~g~g~~~~~~a~~~~~~~~~~~~~~~ 543 (552)
T KOG1550 518 HGEGIKVLHLAKRYYDQASEEDSRAY 543 (552)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 27585347899999998752160667
No 183
>KOG2047 consensus
Probab=94.20 E-value=0.037 Score=28.55 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=11.3
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999999972985222211111111
Q gi|254780436|r 72 YNVRGVVYGMNGDFEKALLDFQSALD 97 (298)
Q Consensus 72 ~~~lg~~~~~~g~~~~A~~~~~~al~ 97 (298)
|..+|.-|.+.|.+++|-..|++++.
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047 251 WCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999873116777899999987
No 184
>PRK11906 transcriptional regulator; Provisional
Probab=93.94 E-value=0.02 Score=29.98 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=44.4
Q ss_pred CCCCCCC---CCCCCCCCCCHHHHHHHHHHHHH---CCCH------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 1122211---12232333888999999999998---4998------99999999998617999899999999999
Q gi|254780436|r 225 DSALEDF---KFAINLDPKKASFWFNGGMVYEM---QGSY------ANAVKYYKKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 225 ~~a~~~~---~~a~~~~p~~~~~~~~lg~~~~~---~g~~------~~A~~~~~kAl~l~P~~~~a~~~la~i~~ 287 (298)
..|+..| .......|.+...|+.+|.||.. +|.+ .+|.+...+|.+++|.++.|..-||.+-.
T Consensus 275 ~rAl~if~~~~n~s~~q~~~t~~Yc~LAEChlSlAl~G~se~e~A~~kA~e~~d~a~~i~~~n~qaLgllgLIsg 349 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999999998741678875666650119999999998462278899999999999988367777678899999861
No 185
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.18 Score=24.86 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCCCC------CHHHCCCCCCCC
Q ss_conf 9989999999999981689989999999999972985222211111-111111111112110------000000112222
Q gi|254780436|r 49 MGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQS-ALDLNPRYYKVYANR------ALIRYKMGDVPM 121 (298)
Q Consensus 49 ~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~~~~~~~------~~~~~~~~~~~~ 121 (298)
.....++.....++..||+++.++.++|.+....|....++..+.. +....|.+......+ +......+...+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (620)
T COG3914 81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAE 160 (620)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 66266899876567549552669998888899842478889999988876074007787667778999899998524899
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 111111222211111
Q gi|254780436|r 122 AIRDYGTALKINPDY 136 (298)
Q Consensus 122 a~~~~~~~~~~~~~~ 136 (298)
+.....+.....|..
T Consensus 161 ~~~~l~~~~d~~p~~ 175 (620)
T COG3914 161 AELALERAVDLLPKY 175 (620)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999998854330
No 186
>KOG0530 consensus
Probab=93.65 E-value=0.035 Score=28.70 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=79.0
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC-CCC
Q ss_conf 98199899999999999816899899999999999729-8522221111111111111111211000000011222-211
Q gi|254780436|r 46 FPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNG-DFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP-MAI 123 (298)
Q Consensus 46 ~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~-~a~ 123 (298)
.+...-..|+..-..+|.+||-+-..|..|-.+...++ +..+-+++....++-+|++...+..+..+....+... ...
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred HCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 62656878999899999728542148999999999868889999999999987386521477999999998069411037
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11112222111111122222222
Q gi|254780436|r 124 RDYGTALKINPDYDVAYIGRGNI 146 (298)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~ 146 (298)
......+..+..+..++....-+
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~ 156 (318)
T KOG0530 134 EFTKLMLDDDAKNYHAWSHRQWV 156 (318)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 89999971111100266899999
No 187
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=0.072 Score=27.00 Aligned_cols=55 Identities=9% Similarity=-0.052 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999998499899999999998617999899999999999974288874
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
.....++=..+...++++.|..+-++.+.++|+.+..+.-.|.++..+|-.--++
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl 235 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVAL 235 (269)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHCCCCHHHH
T ss_conf 9999999999998405699999999987518998443167089998648844569
No 188
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.60 E-value=0.069 Score=27.07 Aligned_cols=249 Identities=15% Similarity=-0.004 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 723199999999999981998999999999998168998999999999--997298522221111111111111111211
Q gi|254780436|r 31 LVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVV--YGMNGDFEKALLDFQSALDLNPRYYKVYAN 108 (298)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (298)
..+..++-...++...-.|+++.|-..|+.-+ -+|+- ..+-.+|.. -...|+.+.|+.+-+.+-+.-|..+.....
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl-~dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~A 193 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAML-DDPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARA 193 (531)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-CCHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 46458999999889886476187999999873-68388-77767889999986021899999999987636677167999
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0000000112222111111222211111112222-----22222221111111111121111222222222222222211
Q gi|254780436|r 109 RALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG-----RGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVY 183 (298)
Q Consensus 109 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (298)
........|++..++................... +.-........+...+...........|........-...+
T Consensus 194 tLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAral 273 (531)
T COG3898 194 TLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARAL 273 (531)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 99999866786889999998888775261167789899998888877248867788999987503876336999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 11111112221211111111222122222222222111111112221---112232333888999999999998499899
Q gi|254780436|r 184 QMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALED---FKFAINLDPKKASFWFNGGMVYEMQGSYAN 260 (298)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 260 (298)
...++..+....+...-...|... +...|.....-+.++.- ..+.....|++.+....++..-..-|++..
T Consensus 274 f~d~~~rKg~~ilE~aWK~ePHP~------ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ 347 (531)
T COG3898 274 FRDGNLRKGSKILETAWKAEPHPD------IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSA 347 (531)
T ss_pred HHCCCHHHHHHHHHHHHHCCCCHH------HHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 742462433248899873499848------99999880479748899999999985284206788999999872256487
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 9999999986179998999999999999
Q gi|254780436|r 261 AVKYYKKALSVDSRYYRAKNGILRISQD 288 (298)
Q Consensus 261 A~~~~~kAl~l~P~~~~a~~~la~i~~~ 288 (298)
|...-+.+..+.|.- .++.-|+.|-..
T Consensus 348 ARa~Aeaa~r~~pre-s~~lLlAdIeeA 374 (531)
T COG3898 348 ARAKAEAAAREAPRE-SAYLLLADIEEA 374 (531)
T ss_pred HHHHHHHHHHHCCHH-HHHHHHHHHHHH
T ss_conf 888899875307234-689998778763
No 189
>KOG3783 consensus
Probab=93.58 E-value=0.043 Score=28.21 Aligned_cols=81 Identities=10% Similarity=0.025 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999999999816899899999999999729852222111111111111--1111211000000011222211111122
Q gi|254780436|r 52 RVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPR--YYKVYANRALIRYKMGDVPMAIRDYGTA 129 (298)
Q Consensus 52 ~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 129 (298)
+...+.+....+..|+.+.-....+..+...|+.+.|+..++.+++..-. ....++.++.......++..+...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999868899748998509999988999706479899999821628999999999999999999999988776189998
Q ss_pred CCC
Q ss_conf 221
Q gi|254780436|r 130 LKI 132 (298)
Q Consensus 130 ~~~ 132 (298)
...
T Consensus 330 ~de 332 (546)
T KOG3783 330 RDE 332 (546)
T ss_pred HHH
T ss_conf 755
No 190
>KOG3783 consensus
Probab=93.55 E-value=0.019 Score=30.13 Aligned_cols=251 Identities=12% Similarity=0.002 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC----HHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 998999999972319999999999998199899999999999816899----8999999999997298522221111111
Q gi|254780436|r 21 RRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSD----PEGYNVRGVVYGMNGDFEKALLDFQSAL 96 (298)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al 96 (298)
++.........+++...+...+..+...++.+.|+..++..++ +.. .-.++.+|.++.-+.+|..|-.++....
T Consensus 253 ~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~ 330 (546)
T KOG3783 253 EKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLR 330 (546)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9986889974899850999998899970647989999982162--89999999999999999999999887761899987
Q ss_pred CCCCCCCCCCCCCC-HHHCCC--------CCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11111111121100-000001--------122221111112222111111-12222222222211111111111211112
Q gi|254780436|r 97 DLNPRYYKVYANRA-LIRYKM--------GDVPMAIRDYGTALKINPDYD-VAYIGRGNIYRDERYSDLQKAFADFDRAI 166 (298)
Q Consensus 97 ~~~~~~~~~~~~~~-~~~~~~--------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (298)
+...-..-.+.... .++... ++.+.+....+.......... .......... ....+...........
T Consensus 331 desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~R---Kverf~~~~~~~~~~~ 407 (546)
T KOG3783 331 DESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVR---KVERFVKRGPLNASIL 407 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHHCCCCCCCCCC
T ss_conf 5544558889999998972409998721255167789887779999854556752688899---9999860365331102
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---C----
Q ss_conf 222222222222222111111111222121111111122212222222222211111111222111223233---3----
Q gi|254780436|r 167 QLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLD---P---- 239 (298)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~---p---- 239 (298)
...|.....+...+..........+...........+.....-.+...|.++...++...+...+..+++.. .
T Consensus 408 la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w 487 (546)
T KOG3783 408 LASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLW 487 (546)
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 23169999999862456784668999999856577981389999999999998728888889999999888875225645
Q ss_pred CCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCH
Q ss_conf 888999999999998499-8999999999986179998
Q gi|254780436|r 240 KKASFWFNGGMVYEMQGS-YANAVKYYKKALSVDSRYY 276 (298)
Q Consensus 240 ~~~~~~~~lg~~~~~~g~-~~~A~~~~~kAl~l~P~~~ 276 (298)
-.|-++|-+|..+..+|. ..++...+.||-+-..+|.
T Consensus 488 ~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783 488 AVPFALYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 36289999999999615675789999999886255644
No 191
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.33 E-value=0.3 Score=23.62 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999984998999999999986179998999999999999742888
Q gi|254780436|r 244 FWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVN 294 (298)
Q Consensus 244 ~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~ 294 (298)
.+.-.+..|...|.+.+|++..++++.+||-+...+..|-+++..+|+-.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is 331 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEIS 331 (361)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 999999999975992789999987720270446789999999998065043
No 192
>pfam09986 DUF2225 Uncharacterized protein conserved in bacteria (DUF2225). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=93.09 E-value=0.086 Score=26.56 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCCCCCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHH
Q ss_conf 11112221112232333------8889999999999984998999999999986179998-99999999999
Q gi|254780436|r 223 NYDSALEDFKFAINLDP------KKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYY-RAKNGILRISQ 287 (298)
Q Consensus 223 ~~~~a~~~~~~a~~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~-~a~~~la~i~~ 287 (298)
-...|...|..+.+... +...+.+.+|.+...+|++++|+..|.+++.-..... .-...+|+-+.
T Consensus 140 fl~~Al~~y~~ay~~e~~~~~~~~e~~l~YLigeL~rRlG~~~eA~~wfs~vi~~~~~s~~~~i~~~aRe~w 211 (214)
T pfam09986 140 FLKKALELYKEAYEKEDFPIEGIDEATLMYLIGELSRRLGNKEEALRWFSKVIGSPKASKPSKLKDLAREQW 211 (214)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 999999999999960668877711889999999999994999999999999963966663188999989888
No 193
>pfam11207 DUF2989 Protein of unknown function (DUF2989). Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.49 E-value=0.5 Score=22.42 Aligned_cols=56 Identities=9% Similarity=0.061 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 38889999999999984998999999999986179----9989999999999997428887
Q gi|254780436|r 239 PKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDS----RYYRAKNGILRISQDLSSTVNE 295 (298)
Q Consensus 239 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P----~~~~a~~~la~i~~~lg~~~~~ 295 (298)
-++++..+.+|..| ...+.++++..+.+|+++.. =+++...+|+.++..+|+...+
T Consensus 138 l~t~elq~aLAtyY-~k~d~~Kt~~Ll~~aL~l~~~~d~~n~eil~sLas~~~~~~~~~~A 197 (203)
T pfam11207 138 LETPELQYALATYY-IKRDPDKTIQLLYRALELYTPGDKFNPEILLSLASIYQKQKNYEQA 197 (203)
T ss_pred CCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHH
T ss_conf 89899999999999-8048899999999999805876757979999999999871421343
No 194
>pfam02259 FAT FAT domain. The FAT domain is named after FRAP, ATM and TRRAP.
Probab=92.07 E-value=0.57 Score=22.13 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 89999999999984------9989999999999861799989999999999997
Q gi|254780436|r 242 ASFWFNGGMVYEMQ------GSYANAVKYYKKALSVDSRYYRAKNGILRISQDL 289 (298)
Q Consensus 242 ~~~~~~lg~~~~~~------g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~l 289 (298)
+.++..+|.-...+ ++.++++..|..|++++|+...++..+|....++
T Consensus 252 Ar~~l~lg~W~~~~~~~~~~~~~~~il~~y~~A~~~~~~w~Kaw~~wa~~~~~~ 305 (351)
T pfam02259 252 ARCFLKLGEWLDKLQMNWGQGKKDEILKAYRTATQFDDQWYKAWHSWALANFEV 305 (351)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999989999856543645799999999999987866489999999999999
No 195
>KOG1941 consensus
Probab=91.67 E-value=0.069 Score=27.10 Aligned_cols=62 Identities=19% Similarity=0.019 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC------CCCCCCHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999729852222111111111111111------121100000001122221111112222
Q gi|254780436|r 70 EGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK------VYANRALIRYKMGDVPMAIRDYGTALK 131 (298)
Q Consensus 70 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~~~~~~~ 131 (298)
.+...+|.++..++.|+++++.|+++++......+ ....++..+....+++++..+..++..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~ 190 (518)
T KOG1941 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAE 190 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35657777751378899999999999987650698403541353388999998744677761476999
No 196
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.52 E-value=0.28 Score=23.77 Aligned_cols=64 Identities=22% Similarity=0.085 Sum_probs=42.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 22222221111111122211122323338889999999999984998999999999986179998
Q gi|254780436|r 212 NGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYY 276 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~ 276 (298)
..++.+....+.+++++..+....... -.+..--.+|.++...|+.++|+..|++|++.++...
T Consensus 130 lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 130 LRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 999999998603888999872301110-7889999742699972865999999999987157748
No 197
>KOG2396 consensus
Probab=91.35 E-value=0.12 Score=25.77 Aligned_cols=85 Identities=12% Similarity=0.082 Sum_probs=42.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC-CCCCCCCCCCCCCCCC
Q ss_conf 999999981689989999999999972985222211111111111111112110000000112-2221111112222111
Q gi|254780436|r 56 DSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGD-VPMAIRDYGTALKINP 134 (298)
Q Consensus 56 ~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~ 134 (298)
..|..|+..-|.++..|.+-.....+.+.+.+--..|.+++..+|+++..|...+...+..+. .+.+...+.+.+..+|
T Consensus 92 ~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~np 171 (568)
T KOG2396 92 FLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNP 171 (568)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999997567777899999999998422468999999999858998306886655687503235899999997764189
Q ss_pred CCCCCC
Q ss_conf 111122
Q gi|254780436|r 135 DYDVAY 140 (298)
Q Consensus 135 ~~~~~~ 140 (298)
..+..+
T Consensus 172 dsp~Lw 177 (568)
T KOG2396 172 DSPKLW 177 (568)
T ss_pred CCHHHH
T ss_conf 976899
No 198
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.09 E-value=0.7 Score=21.63 Aligned_cols=53 Identities=13% Similarity=0.217 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999999999816899899999999999729852222111111111111111
Q gi|254780436|r 51 RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK 104 (298)
Q Consensus 51 ~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (298)
+.+|+..|+. +.-.|.-|--|...+.+|.++|+|++-++++.-|++..|..+.
T Consensus 535 ~~~al~~f~~-lh~~~~apleylgkalvyq~~~~~~eeik~~~la~kry~~hp~ 587 (933)
T PRK13184 535 FTQALSEFSY-LHGGVAAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (933)
T ss_pred HHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999988-5389887578888899998730078999999999975679987
No 199
>KOG0890 consensus
Probab=90.80 E-value=0.26 Score=23.96 Aligned_cols=56 Identities=9% Similarity=0.128 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8889999999999984998999999999986179998999999999999742888743
Q gi|254780436|r 240 KKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVN 297 (298)
Q Consensus 240 ~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~n 297 (298)
.-.++|...|.+-...|+++-|-.+.-+|.+.. -+++....|+.+-..|+-.++++
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~ 1723 (2382)
T KOG0890 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALS 1723 (2382)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCHHHHHH
T ss_conf 268999999999986233899999987644315--41679999999986230887999
No 200
>pfam10300 IML2 Putative mitochondrial outer membrane protein. This is a family of proteins conserved from fungi to humans. Members of this family also carry a TPR_2 domain pfam07719 at their C-terminus. Many of them are annotated as being mitochondrial outer membrane protein IML2.
Probab=90.75 E-value=0.31 Score=23.57 Aligned_cols=86 Identities=13% Similarity=-0.041 Sum_probs=55.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH-
Q ss_conf 212222222222211111111222111223233388----899999999999849989999999999861799989999-
Q gi|254780436|r 206 ISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKK----ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKN- 280 (298)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~- 280 (298)
+..-+....|......++.++|+..++.++.....- .-.++.+|.++.-+.+|++|..+|.+..+.+.-....+.
T Consensus 248 ~s~l~l~~~gR~~~~~g~l~~Ai~~~~~~~~~~~~~kQ~~~lc~~El~w~~~~~~~w~~A~~~~~~L~~~s~WSka~Y~Y 327 (446)
T pfam10300 248 NSALWLFFEARIESLKGNLDEALELFEECIESQSEWKQIHHLCYWELAWCHVFLHRWKQAANYFLLLSDESKWSKALYAY 327 (446)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 94689999999999737999999999986744654499999999999999999978999999999999845418999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999742
Q gi|254780436|r 281 GILRISQDLSS 291 (298)
Q Consensus 281 ~la~i~~~lg~ 291 (298)
..|.++..+|+
T Consensus 328 ~~a~c~~~~~~ 338 (446)
T pfam10300 328 LAAACLLMLGR 338 (446)
T ss_pred HHHHHHHHHCC
T ss_conf 99999986533
No 201
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.61 E-value=0.99 Score=20.82 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 22222221111111122211122323338889999999999984998999999999986
Q gi|254780436|r 212 NGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALS 270 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~ 270 (298)
..+...+...++++.+...++..+..+|-+-.+|..+=..|...|+...|+..|++.-+
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999987312188999999999862964649999999999975880689999999999
No 202
>pfam10516 SHNi-TPR SHNi-TPR. SHNi-TPR family members contain a reiterated sequence motif that is an interrupted form of TPR repeat.
Probab=89.25 E-value=0.39 Score=23.01 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999999984998999999999986179
Q gi|254780436|r 243 SFWFNGGMVYEMQGSYANAVKYYKKALSVDS 273 (298)
Q Consensus 243 ~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P 273 (298)
++|..+|.+-....+|.+|+.+|+++|++.-
T Consensus 2 d~~~~LgEislE~e~F~qA~~D~~~~L~l~~ 32 (38)
T pfam10516 2 DVYDLLGEISLENENFPQAVEDLRKALELRE 32 (38)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 1888777865401560778999999999999
No 203
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=88.92 E-value=0.12 Score=25.73 Aligned_cols=77 Identities=9% Similarity=0.036 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 319999999999998-199899999999999816899899999-99999972985222211111111111111112110
Q gi|254780436|r 33 VSVILLIEGCSSLFP-SMGRRVNIDSLTAVIRAHPSDPEGYNV-RGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANR 109 (298)
Q Consensus 33 ~~~~~~~~~~~~~~~-~~~~~~Ai~~~~~al~~~P~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (298)
++...+|..-..+.. .+.|.+--..|.++++.+|.+++.|.. -+.-+...++++.+...|.+++.++|..+..|...
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 8870899999999999878989999999999619987405656300035441567989999986531488984299999
No 204
>pfam09613 HrpB1_HrpK Bacterial type III secretion protein (HrpB1_HrpK). This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.42 E-value=1.2 Score=20.34 Aligned_cols=70 Identities=16% Similarity=0.013 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
Q ss_conf 9899999999999816899899999999999729852222111111111111111121100000001122
Q gi|254780436|r 50 GRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDV 119 (298)
Q Consensus 50 ~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 119 (298)
...++-..+...--+.|+.++.=..-|.++...|++.+|+..|....+-.+..+.....++.++...++.
T Consensus 25 ~~~D~e~lL~AlRvLRP~~~e~d~~dg~l~i~rg~w~dA~r~lr~v~~~~~~~~~~kAL~A~CL~a~~D~ 94 (156)
T pfam09613 25 DIADAEELLEALRILRPRLAELDLFDGWLYIGRGQWDDAARLLRELEGRASHLPLCKALMAQCLFALQDP 94 (156)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
T ss_conf 8778999999999858983266587877877606589999999998626778489999999999874796
No 205
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=88.27 E-value=0.3 Score=23.62 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 2211111111222111223233388899999999999849989999999999861
Q gi|254780436|r 217 SYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSV 271 (298)
Q Consensus 217 ~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l 271 (298)
.+...++...|...|...+...|+.+..-+..=..+...++-+.|...|+++++-
T Consensus 441 E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r 495 (660)
T COG5107 441 EYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVER 495 (660)
T ss_pred HHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 9886189531789998777737995389999999998708477789999876888
No 206
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=87.83 E-value=0.094 Score=26.37 Aligned_cols=85 Identities=12% Similarity=0.126 Sum_probs=64.7
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999998168998999999999997298522221111111111111111211-0000000112222111111222211111
Q gi|254780436|r 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYAN-RALIRYKMGDVPMAIRDYGTALKINPDY 136 (298)
Q Consensus 58 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 136 (298)
|.++....|+++..|..-+.--.+.|-|.+--..|.+++...|.+...|.. ...-+...++...+...+.+.+..++..
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred EEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCC
T ss_conf 65512027887089999999999987898999999999961998740565630003544156798999998653148898
Q ss_pred CCCCCC
Q ss_conf 112222
Q gi|254780436|r 137 DVAYIG 142 (298)
Q Consensus 137 ~~~~~~ 142 (298)
+..+..
T Consensus 176 p~iw~e 181 (435)
T COG5191 176 PRIWIE 181 (435)
T ss_pred CHHHHH
T ss_conf 429999
No 207
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.56 E-value=0.62 Score=21.92 Aligned_cols=63 Identities=25% Similarity=0.307 Sum_probs=53.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999998199899999999999816899899999999999729852222111111111111111
Q gi|254780436|r 42 CSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK 104 (298)
Q Consensus 42 ~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (298)
+..+.+.....++|.....-++.+|.+......+-..+.-.|++++|..-.+-+-++.|....
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCH
T ss_conf 999987313999999999998649866630567787886466499999998888652901026
No 208
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=87.54 E-value=0.38 Score=23.09 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 22222222222111111112221112232333888999999999998499899999999998617999
Q gi|254780436|r 208 PDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 (298)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~ 275 (298)
+..+..++......++.++|...+..+.... ...-.|.-+|.+++..|+.+.|-+.|-+|.-++|..
T Consensus 412 ~riyeAlAl~al~~~~~~~A~~~L~~~~~~~-~Svl~YILlgK~aEl~G~~~~A~e~Y~~Af~~~~s~ 478 (512)
T PRK10153 412 SRIYEALAVQALVKGDTDEAYQALNKAIELE-MSWLNYVLLGKVAELKGDNRLAADAYSTAFNLRPGE 478 (512)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
T ss_conf 2889999999984799999999998675645-569999999999996499668899999998038838
No 209
>pfam10255 Paf67 RNA polymerase I-associated factor PAF67. RNA polymerase I is a multisubunit enzyme and its transcription competence is dependent on the presence of PAF67. This family of proteins is conserved from worms to humans.
Probab=87.17 E-value=0.56 Score=22.15 Aligned_cols=59 Identities=19% Similarity=0.127 Sum_probs=33.8
Q ss_pred HHHHHHHHCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999729852222111111--------1111111111211000000011222211111122221
Q gi|254780436|r 74 VRGVVYGMNGDFEKALLDFQSA--------LDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKI 132 (298)
Q Consensus 74 ~lg~~~~~~g~~~~A~~~~~~a--------l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 132 (298)
.+-.++.-+|||..|++..+-. -+..+-....++..|..+..++++..|+..+...+..
T Consensus 127 gLlRlhvLLGDY~~Alk~L~~Idl~~~~l~~kV~~~~vs~~YyvGFaYlMlrRY~DAir~f~~iL~y 193 (402)
T pfam10255 127 GLLRVHVLLGDYYLALKVLEPIDLSKKGLYSKVPAAYVSLYYYVGFAYLMLRRYADAIRVFSQILIY 193 (402)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCHHHCCCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999987005689999975241446320102474040212458899999986589999999999999
No 210
>pfam07720 TPR_3 Tetratricopeptide repeat. This Pfam entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones.
Probab=86.38 E-value=1.1 Score=20.66 Aligned_cols=33 Identities=18% Similarity=0.396 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999999998499899999999998617999
Q gi|254780436|r 243 SFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275 (298)
Q Consensus 243 ~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~ 275 (298)
+-++.+|..+..+|++++|+..|.-+..++|.+
T Consensus 2 e~l~~~Aa~~~~k~ky~~A~~~y~~l~~l~~~n 34 (34)
T pfam07720 2 EYLYSLAAVFYLKGKYQEAEHLYALLAILDKEN 34 (34)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
T ss_conf 489998999987021347999999999870479
No 211
>pfam04781 DUF627 Protein of unknown function (DUF627). This family represents the N-terminal region of several plant proteins of unknown function.
Probab=85.29 E-value=0.4 Score=22.97 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=10.0
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 999819989999999999981689
Q gi|254780436|r 44 SLFPSMGRRVNIDSLTAVIRAHPS 67 (298)
Q Consensus 44 ~~~~~~~~~~Ai~~~~~al~~~P~ 67 (298)
.+++.|++-+|++..+..+..+++
T Consensus 5 ~~~~~GnhiKAL~iied~is~h~~ 28 (112)
T pfam04781 5 DLFAKGDYIKALEIIEDSISDHGK 28 (112)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 998765759999999999987267
No 212
>KOG0529 consensus
Probab=83.47 E-value=1.7 Score=19.50 Aligned_cols=38 Identities=5% Similarity=-0.101 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999861799989999999999997428887
Q gi|254780436|r 258 YANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNE 295 (298)
Q Consensus 258 ~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~ 295 (298)
..++++.+.++.++-|++.-.....+.++..++.....
T Consensus 352 lqe~ie~c~~l~~~~P~~k~~~l~~~~l~~a~e~~~~~ 389 (421)
T KOG0529 352 LQEQIESCVELQELLPDSKWGLLTSALLLRALEPMDSE 389 (421)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCH
T ss_conf 99999999999852886402689999988633531002
No 213
>KOG0546 consensus
Probab=82.51 E-value=0.1 Score=26.10 Aligned_cols=56 Identities=14% Similarity=-0.110 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999999984998999999999986179998999999999999742888743
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVN 297 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~n 297 (298)
...+.+++.+-.+++.+..|+..-..++..+|....|+...+..+..+-+...+.+
T Consensus 275 ~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~ 330 (372)
T KOG0546 275 FSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALE 330 (372)
T ss_pred CCCCCCHHHHCCCCCCCCCCEECCCCCCCCCHHHCCHHHHHHHHHHHHHCHHHHHH
T ss_conf 00002367751213677762321640023681118288887768876434566677
No 214
>KOG1586 consensus
Probab=82.34 E-value=2.5 Score=18.66 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999999998-19989999999999981689------98999999999997298522221111111111111
Q gi|254780436|r 35 VILLIEGCSSLFP-SMGRRVNIDSLTAVIRAHPS------DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY 102 (298)
Q Consensus 35 ~~~~~~~~~~~~~-~~~~~~Ai~~~~~al~~~P~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (298)
...+...++..|+ .++|..|-..|.++-+.+-. -+..|..-+.+|.+. +.++|+.++++++++..+.
T Consensus 33 Aadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~ 106 (288)
T KOG1586 33 AAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM 106 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHH
T ss_conf 9999999878999888688878999999999886088113788999998876215-8488999999999999852
No 215
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK; InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia..
Probab=82.19 E-value=2.5 Score=18.63 Aligned_cols=56 Identities=20% Similarity=0.028 Sum_probs=26.3
Q ss_pred HCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCHHHCCCCCC
Q ss_conf 168998999999999997298522221111111111111---11121100000001122
Q gi|254780436|r 64 AHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY---YKVYANRALIRYKMGDV 119 (298)
Q Consensus 64 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~~~~~~~ 119 (298)
+-|+..++=..=|.++...|+|.+|+..|.....-.+.. +.....++.++..+++.
T Consensus 45 LrP~l~~~d~~dG~L~i~~G~y~dAaR~L~E~~~~~~~~svm~yg~ALlAlcL~~~~D~ 103 (190)
T TIGR02561 45 LRPNLKELDMFDGWLLIARGNYDDAARILRELLASAGAASVMPYGKALLALCLSAKGDD 103 (190)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 27650688999999986158758999999987248997204378999999987432888
No 216
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=82.07 E-value=2.5 Score=18.61 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=33.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf 9999819989999999999981689989999999999972----985222211111111111111112110000000
Q gi|254780436|r 43 SSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMN----GDFEKALLDFQSALDLNPRYYKVYANRALIRYK 115 (298)
Q Consensus 43 ~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (298)
........+..++..+..+-.. .++.+...+|.+|..- .+..+|+..|..+.+ ...+.....++.++..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~ 121 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYAN 121 (292)
T ss_pred HHHCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHC
T ss_conf 0000221489889999988643--54767899999986355520138999999999873--6979999999999855
No 217
>pfam04212 MIT MIT (microtubule interacting and transport) domain. The MIT domain forms an asymmetric three-helix bundle and binds ESCRT-III (endosomal sorting complexes required for transport) substrates.
Probab=81.80 E-value=2.6 Score=18.55 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999999849989999999999861
Q gi|254780436|r 243 SFWFNGGMVYEMQGSYANAVKYYKKALSV 271 (298)
Q Consensus 243 ~~~~~lg~~~~~~g~~~~A~~~~~kAl~l 271 (298)
..+...|.-....|++++|+.+|.+|++.
T Consensus 6 ~~~~~~Av~~D~~g~y~~A~~~Y~~ai~~ 34 (69)
T pfam04212 6 LELVKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999988869999999999999999
No 218
>KOG0985 consensus
Probab=80.84 E-value=0.97 Score=20.86 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8899999999999849989999999999
Q gi|254780436|r 241 KASFWFNGGMVYEMQGSYANAVKYYKKA 268 (298)
Q Consensus 241 ~~~~~~~lg~~~~~~g~~~~A~~~~~kA 268 (298)
.+..|..+|.+-.+.|...+||+.|-||
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika 1130 (1666)
T KOG0985 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA 1130 (1666)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 8579999999988458407899978615
No 219
>pfam10579 Rapsyn_N Rapsyn N-terminal myristoylation and linker region. Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane.
Probab=80.69 E-value=2.7 Score=18.46 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=42.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999999819989999999999981689---98999999999997298522221111111
Q gi|254780436|r 39 IEGCSSLFPSMGRRVNIDSLTAVIRAHPS---DPEGYNVRGVVYGMNGDFEKALLDFQSAL 96 (298)
Q Consensus 39 ~~~~~~~~~~~~~~~Ai~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al 96 (298)
.+.+-.+|.+.+.+.|+..+.++++.-.+ -...+-.+..+|...|+|.+.+++--+-+
T Consensus 10 ie~GlkLY~~~~~~~Av~~W~~~L~k~~~~~~rF~~LGyL~qA~~e~GkYr~ml~fa~~Q~ 70 (80)
T pfam10579 10 IEKGLRLYQSNNTEKALEIWRKVLEKTTDREGRFRVLGCLITAHSEMGKYKEMLEFAVAQI 70 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999997128999999999998724700147899899999989888999999999999
No 220
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=80.38 E-value=2.4 Score=18.68 Aligned_cols=56 Identities=18% Similarity=0.120 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------CCC----CHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 899999999999849989999999999861------799----98999999999999742888743
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSV------DSR----YYRAKNGILRISQDLSSTVNEVN 297 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l------~P~----~~~a~~~la~i~~~lg~~~~~~n 297 (298)
+..+.+.|..+...|+.++|+.+|++++.. =|. -...|...-++..++..+.+.|.
T Consensus 8 Af~~I~kaL~~dE~g~~~~Al~~Y~~gi~~L~~g~ai~~~~~~~g~~we~ar~lq~KM~~~l~~v~ 73 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVK 73 (79)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999986111158999999999999999997618888888883889999999999999999999
No 221
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=79.93 E-value=3 Score=18.19 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999999849989999999999861
Q gi|254780436|r 244 FWFNGGMVYEMQGSYANAVKYYKKALSV 271 (298)
Q Consensus 244 ~~~~lg~~~~~~g~~~~A~~~~~kAl~l 271 (298)
.+...|......|++++|+..|.++++.
T Consensus 10 ~~v~~Av~~D~~g~y~eA~~~Y~~ai~~ 37 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999987818899999999999999
No 222
>pfam07079 DUF1347 Protein of unknown function (DUF1347). This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=79.09 E-value=3.2 Score=18.04 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 222211111111222111223233388899999999999849989999999999861799--98999999999999742
Q gi|254780436|r 215 GISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR--YYRAKNGILRISQDLSS 291 (298)
Q Consensus 215 ~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~--~~~a~~~la~i~~~lg~ 291 (298)
+...+..|++..+.-.-.-..+..| .+.+|.-+|.|+...+.|.||.+++.+ +..+.+ +......+..+++.+.+
T Consensus 469 AeyLfa~gdY~kCy~YS~WLtkvaP-S~~~yrLlGLcL~enK~Y~EAwe~l~~-Lp~n~~~~dskvqKAl~lCqKh~~k 545 (550)
T pfam07079 469 AEYLFAQGDYHKCYLYSLWLTKVAP-SPLAYRLLGLCLLENKEYLEAWEYLHS-LPLNERTYDSKVQKALLLCQKHLPK 545 (550)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 8999753770043656988876189-788999998888401658999999974-8998641168999999999974605
No 223
>KOG2581 consensus
Probab=78.03 E-value=2.7 Score=18.47 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=35.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 222222111111112221112232----33388899999999999849989999999999861799
Q gi|254780436|r 213 GRGISYLATKNYDSALEDFKFAIN----LDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR 274 (298)
Q Consensus 213 ~~~~~~~~~~~~~~a~~~~~~a~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~ 274 (298)
.+-..+...+.++.|.....++.- .+...+...+.+|.+..-+++|..|.++|-+|+...|+
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581 214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 999998616788789877650458654532799999999876888740177899999999984852
No 224
>KOG4151 consensus
Probab=76.33 E-value=3.9 Score=17.59 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=46.5
Q ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 981998999999999998168998999999999997298522221111111111111111
Q gi|254780436|r 46 FPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKV 105 (298)
Q Consensus 46 ~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (298)
...++|..++...+-++...|....++..++.+|.-.++++-|+.+..-.....|.+...
T Consensus 104 ~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151 104 LGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred CCCCCHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 485430222374245655163177877345567787877888999999873478775218
No 225
>KOG2709 consensus
Probab=75.29 E-value=3.4 Score=17.89 Aligned_cols=30 Identities=3% Similarity=-0.161 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999999999819989999999999981
Q gi|254780436|r 35 VILLIEGCSSLFPSMGRRVNIDSLTAVIRA 64 (298)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~ 64 (298)
.....+.+-+....+++++|+..|++.|..
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709 22 AYASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHHHHHCCHHHHCCHHHHHHHHHHHHHH
T ss_conf 999998622656433988899999998778
No 226
>pfam12583 TPPII_N Tripeptidyl peptidase II N terminal. This domain family is found in bacteria and eukaryotes, and is approximately 190 amino acids in length. The family is found in association with pfam00082. Tripeptidyl peptidase II (TPPII) is a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides.
Probab=71.08 E-value=5.3 Score=16.86 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 88999999999998499899999999998617999899999999999
Q gi|254780436|r 241 KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 241 ~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~ 287 (298)
..+.+..+-..+....+++.|.+.|+..+...|++..++..|..-+.
T Consensus 69 Y~EsLRDfQ~s~i~K~e~E~AE~iY~ev~~~~P~hL~aHl~liqnle 115 (134)
T pfam12583 69 YAESLRDFQCSHIVKCDLENAEKIYNEVVAAHPKHLQAHLLLIQNIE 115 (134)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 99999888889997307888999999999878115999999998327
No 227
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=69.79 E-value=5.7 Score=16.70 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=16.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-------HCCCCHHHH
Q ss_conf 99999999984998999999999986-------179998999
Q gi|254780436|r 245 WFNGGMVYEMQGSYANAVKYYKKALS-------VDSRYYRAK 279 (298)
Q Consensus 245 ~~~lg~~~~~~g~~~~A~~~~~kAl~-------l~P~~~~a~ 279 (298)
|-..+.-....|+++.||.+|++|++ +.|+.+-..
T Consensus 9 YA~~AVkaD~~G~~~~AI~~Y~kAie~L~kl~~LYPds~l~~ 50 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 999987375347788899999999999999998789817999
No 228
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=69.19 E-value=5.8 Score=16.63 Aligned_cols=25 Identities=4% Similarity=-0.052 Sum_probs=11.1
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999981998999999999998
Q gi|254780436|r 39 IEGCSSLFPSMGRRVNIDSLTAVIR 63 (298)
Q Consensus 39 ~~~~~~~~~~~~~~~Ai~~~~~al~ 63 (298)
...+......++|++|+..|..+++
T Consensus 10 ~~~Av~~D~~g~y~eA~~lY~~ai~ 34 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999998884889999999999999
No 229
>PRK04841 transcriptional regulator MalT; Provisional
Probab=68.89 E-value=2.4 Score=18.75 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 222211111111222111223233------3888999999999998499899999999998617
Q gi|254780436|r 215 GISYLATKNYDSALEDFKFAINLD------PKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272 (298)
Q Consensus 215 ~~~~~~~~~~~~a~~~~~~a~~~~------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~ 272 (298)
+......++++.|...+....... .....++.-.+.++..+|+.++|...+.+|+.+-
T Consensus 698 ar~~l~~g~~~~A~~~l~~l~~~a~~~~~~~~~~~~~ll~A~a~~~~g~~~~A~~~l~~AL~lA 761 (903)
T PRK04841 698 ARAQILLGQFDEAEIVLEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSDAQRALLEALKLA 761 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999982997999999999999998727534699999999999998799999999999999976
No 230
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=66.93 E-value=6.5 Score=16.36 Aligned_cols=28 Identities=7% Similarity=-0.103 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999999981998999999999998
Q gi|254780436|r 36 ILLIEGCSSLFPSMGRRVNIDSLTAVIR 63 (298)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~Ai~~~~~al~ 63 (298)
..+...+....+.++|++|+.+|..+|+
T Consensus 7 ~~lv~rAve~D~~~~y~eAl~~Y~~gi~ 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999998871569999999999999
No 231
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=65.18 E-value=7.1 Score=16.17 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 89999999999984998999999999986179998999999999
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRI 285 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i 285 (298)
-..+.-+|..+.++|+.++|-..|++|+.+-++-.+...-+.++
T Consensus 365 ~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 365 HLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 22087778999981870778999999998668869999999999
No 232
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=61.86 E-value=8.2 Score=15.82 Aligned_cols=30 Identities=33% Similarity=0.562 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHH----CCCHHHHHHHHHHHHHHC
Q ss_conf 999999999998----499899999999998617
Q gi|254780436|r 243 SFWFNGGMVYEM----QGSYANAVKYYKKALSVD 272 (298)
Q Consensus 243 ~~~~~lg~~~~~----~g~~~~A~~~~~kAl~l~ 272 (298)
.+.+.+|.+|.. ..+.++|+..|++|.+..
T Consensus 2 ~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~~ 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 7899999998769988849999999999998866
No 233
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=59.30 E-value=9.1 Score=15.57 Aligned_cols=26 Identities=4% Similarity=-0.059 Sum_probs=12.5
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999981998999999999998
Q gi|254780436|r 38 LIEGCSSLFPSMGRRVNIDSLTAVIR 63 (298)
Q Consensus 38 ~~~~~~~~~~~~~~~~Ai~~~~~al~ 63 (298)
+...+......++|++|+..|.++|+
T Consensus 9 lv~~Av~~D~~~~Y~eA~~lY~~al~ 34 (75)
T cd02678 9 LVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99999997873779999999999999
No 234
>KOG2997 consensus
Probab=59.10 E-value=9.2 Score=15.55 Aligned_cols=39 Identities=15% Similarity=0.050 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 999999999999819989999999999981689989999
Q gi|254780436|r 35 VILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYN 73 (298)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~ 73 (298)
...++..+....+.|+.-+||..|..|+++.|+.-..+.
T Consensus 19 A~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997 19 AIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 999999998776347487778887765538800999999
No 235
>pfam08631 SPO22 Meiosis protein SPO22/ZIP4 like. SPO22/ZIP4 in yeast is a meiosis specific protein involved in sporulation. It has been shown to regulate crossover distribution by promoting synaptonemal complex formation.
Probab=58.67 E-value=9.4 Score=15.51 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999984998999999999986
Q gi|254780436|r 244 FWFNGGMVYEMQGSYANAVKYYKKALS 270 (298)
Q Consensus 244 ~~~~lg~~~~~~g~~~~A~~~~~kAl~ 270 (298)
.+-+.|...++.++|++|+..|+-++.
T Consensus 250 LLW~~~~~~~~~k~Y~~A~~W~~~al~ 276 (280)
T pfam08631 250 LLWNKGKKNYKTKNYDEALEWYKLALH 276 (280)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999998999987279999999999987
No 236
>pfam04910 DUF654 Protein of unknown function, DUF654. This family includes a number of poorly characterized eukaryotic proteins.
Probab=56.85 E-value=10 Score=15.33 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 9999999816899899999999999729852222111111111
Q gi|254780436|r 56 DSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDL 98 (298)
Q Consensus 56 ~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 98 (298)
+..-..+..+|-+...+..++.++..+|+.+.|-+..++|+-.
T Consensus 27 ~~l~~lL~~~PYHvdtLLq~s~v~~~qgd~~~a~dlieRALf~ 69 (343)
T pfam04910 27 EALISLLQKYPYHVDTLLQVSEIFRRQGDHSLANDLIERALFA 69 (343)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999999859983789999999999847788899999999999
No 237
>KOG1585 consensus
Probab=55.73 E-value=11 Score=15.23 Aligned_cols=67 Identities=12% Similarity=0.115 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 19999999999998-199899999999999816899------89999999999972985222211111111111
Q gi|254780436|r 34 SVILLIEGCSSLFP-SMGRRVNIDSLTAVIRAHPSD------PEGYNVRGVVYGMNGDFEKALLDFQSALDLNP 100 (298)
Q Consensus 34 ~~~~~~~~~~~~~~-~~~~~~Ai~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 100 (298)
+.......+...|+ .+++++|-.++.++++-..++ +.+|-..|.....+..+.++...|+++..+.-
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~ 102 (308)
T KOG1585 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 35789999999998513578889999999999883213878888899999999998872799999999999999
No 238
>pfam10602 RPN7 26S proteasome subunit RPN7. RPN7 (known as the non ATPase regulatory subunit 6 in higher eukaryotes) is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae to be required for structural integrity. The 26S proteasome is is involved in the ATP-dependent degradation of ubiquitinated proteins.
Probab=54.87 E-value=11 Score=15.15 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 9999999999972985222211111111
Q gi|254780436|r 70 EGYNVRGVVYGMNGDFEKALLDFQSALD 97 (298)
Q Consensus 70 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 97 (298)
.++..+|..|.+.|+.+.|++.|.++.+
T Consensus 37 ~~~~~l~~~y~~iGd~~~A~k~y~~~~~ 64 (174)
T pfam10602 37 MANLDLGEHYAKIGDLENALKAYSRARE 64 (174)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 9999989999996679999999999883
No 239
>KOG4459 consensus
Probab=54.50 E-value=11 Score=15.12 Aligned_cols=49 Identities=12% Similarity=0.018 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 8999999999998499899999999998617999899999999999974
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLS 290 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg 290 (298)
+..|..+--+|+++++..+|..+-..-+-.+|++..-..+++.=...++
T Consensus 290 as~y~ylQFa~ykise~tqA~~~~~syLlf~~sh~v~r~~l~y~q~~r~ 338 (471)
T KOG4459 290 ASHYHYLQFAYYKISEVTQAAECAASYLLFDPSHSVMRQNLAYYQVHRL 338 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHC
T ss_conf 9898888889854987888760544200017768999999999999852
No 240
>KOG0889 consensus
Probab=54.19 E-value=11 Score=15.09 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 889999999999984998999999999986179998999999999999
Q gi|254780436|r 241 KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQD 288 (298)
Q Consensus 241 ~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~ 288 (298)
.++.+..+|....++|+.++|-..|..|++++-.-..||...|.-...
T Consensus 2811 ~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~ 2858 (3550)
T KOG0889 2811 KAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDN 2858 (3550)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998655999984674414799999999986568899999999999
No 241
>pfam09797 NatB_MDM20 N-acetyltransferase B complex (NatB) non catalytic subunit. This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae this subunit is called MDM20 and in Schizosaccharomyces pombe it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1.
Probab=51.75 E-value=12 Score=14.86 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 11122211122323338889999999999984998999999999
Q gi|254780436|r 224 YDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKK 267 (298)
Q Consensus 224 ~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k 267 (298)
.-+|+..++..+...|.|......+-.+|..+|-...|.+.|.+
T Consensus 195 l~~ai~lLE~~l~~sp~n~~~kLlLvrlY~~LG~~~~A~~~~~~ 238 (365)
T pfam09797 195 LLEAIALLENGLKKSPHNYDLKLLLIRLYLLLGAASLAYEHYEK 238 (365)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999857985689999999999986991799999986
No 242
>KOG1914 consensus
Probab=51.48 E-value=12 Score=14.84 Aligned_cols=69 Identities=13% Similarity=-0.033 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 997231999999999999819989999999999981689989999999999972985222211111111
Q gi|254780436|r 29 SVLVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALD 97 (298)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 97 (298)
....+..+..|.......+.+.+++.-+.|++.+...|..+.+|..-...-...++|+.-...|.+++.
T Consensus 13 ie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914 13 IEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 743986578999999997258778999999998614889847899999999876128899999999988
No 243
>pfam07721 TPR_4 Tetratricopeptide repeat. This Pfam entry includes tetratricopeptide-like repeats not detected by the pfam00515, pfam07719 and pfam07720 models.
Probab=51.28 E-value=13 Score=14.82 Aligned_cols=23 Identities=9% Similarity=-0.041 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999999998499899999999
Q gi|254780436|r 244 FWFNGGMVYEMQGSYANAVKYYK 266 (298)
Q Consensus 244 ~~~~lg~~~~~~g~~~~A~~~~~ 266 (298)
+...+|.++...|++++|...++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~l~ 25 (26)
T pfam07721 3 ALLALARALLALGDLDEARALLE 25 (26)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHC
T ss_conf 69999999998067788998861
No 244
>KOG1464 consensus
Probab=51.21 E-value=13 Score=14.82 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 98999999999998168998----999999999997298522221111111
Q gi|254780436|r 50 GRRVNIDSLTAVIRAHPSDP----EGYNVRGVVYGMNGDFEKALLDFQSAL 96 (298)
Q Consensus 50 ~~~~Ai~~~~~al~~~P~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al 96 (298)
.-++|+..|.+++++.|+-. .++-..-.+++++|+|++-.+.|.+.+
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 879999999999941664342679999988877750466799999999999
No 245
>pfam05843 Suf Suppressor of forked protein (Suf). This family consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster Suppressor of forked [Su(f)] protein shares homology with the yeast RNA14 protein and the 77-kDa subunit of human cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and an important role of the GU-rich sequence for this regulation to occur.
Probab=49.43 E-value=13 Score=14.66 Aligned_cols=85 Identities=9% Similarity=-0.064 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 999989999999723-19999999999998-1998999999999998168998999999999997298522221111111
Q gi|254780436|r 19 SKRRGYYSLLSVLVV-SVILLIEGCSSLFP-SMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSAL 96 (298)
Q Consensus 19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 96 (298)
..++..+..+-.... ..-+....+-..+. .++..-|...|+..++.-|+++.....--..+..+++...+-..|++++
T Consensus 18 ~~aR~vF~~aRk~~~~t~~vyva~Al~E~~~~~d~~~a~kIFelGlK~f~~~~~y~~~Yld~Li~~nd~~n~R~lFE~~~ 97 (275)
T pfam05843 18 KAARKVFKKARKKGRITYHVYVASALMEYYCSKDPKTAFKIFELGLKLFPEDGEFVLKYLDFLISLNDDTNARVLFETVV 97 (275)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 88999999986078985599999999999873780799999999987658978999999999987177501899999998
Q ss_pred CCCCCCC
Q ss_conf 1111111
Q gi|254780436|r 97 DLNPRYY 103 (298)
Q Consensus 97 ~~~~~~~ 103 (298)
...+...
T Consensus 98 ~~l~~~~ 104 (275)
T pfam05843 98 TKLTPEP 104 (275)
T ss_pred HHCCCCH
T ss_conf 5048737
No 246
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=49.28 E-value=14 Score=14.64 Aligned_cols=29 Identities=21% Similarity=0.139 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99899999999998617999899999999
Q gi|254780436|r 256 GSYANAVKYYKKALSVDSRYYRAKNGILR 284 (298)
Q Consensus 256 g~~~~A~~~~~kAl~l~P~~~~a~~~la~ 284 (298)
|+.+.|...|++++...|.+...+...+.
T Consensus 1 ~~~~~~r~iyer~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 92889999999999977147999999987
No 247
>KOG1839 consensus
Probab=48.96 E-value=14 Score=14.62 Aligned_cols=58 Identities=16% Similarity=0.208 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 33888999999999998499899999999998617999--------89999999999997428887
Q gi|254780436|r 238 DPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY--------YRAKNGILRISQDLSSTVNE 295 (298)
Q Consensus 238 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~--------~~a~~~la~i~~~lg~~~~~ 295 (298)
.|.-+....+++.++..+++++.|+.+.+.|+.++-+. ...+..++++....|..-++
T Consensus 1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~a 1118 (1236)
T KOG1839 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNA 1118 (1236)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 996223264799998558888778999999998776624852103456788999987526889999
No 248
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.34 E-value=14 Score=14.56 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 899999999999849989999999999861
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSV 271 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l 271 (298)
+-.+-.+|.-+.+.|+|.+|+-+|+.|-++
T Consensus 6 Av~fAr~aV~~Dq~G~y~eAvfyYkEAaqa 35 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 999999998540278717999999999999
No 249
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=46.94 E-value=15 Score=14.44 Aligned_cols=24 Identities=0% Similarity=-0.121 Sum_probs=10.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999981998999999999998
Q gi|254780436|r 40 EGCSSLFPSMGRRVNIDSLTAVIR 63 (298)
Q Consensus 40 ~~~~~~~~~~~~~~Ai~~~~~al~ 63 (298)
..+......++|.+|+..|..+++
T Consensus 11 ~~Av~~D~~~~y~eA~~lY~~ale 34 (75)
T cd02684 11 VQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999998872679999999999999
No 250
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=45.08 E-value=16 Score=14.27 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=8.9
Q ss_pred HHCCCHHHHHHHHHHHHHH
Q ss_conf 9849989999999999861
Q gi|254780436|r 253 EMQGSYANAVKYYKKALSV 271 (298)
Q Consensus 253 ~~~g~~~~A~~~~~kAl~l 271 (298)
...|+.++|++.|..|+++
T Consensus 17 DE~g~~~eAieLYt~AvEl 35 (75)
T cd02680 17 DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHCCCHHHHHHHHHHHHHH
T ss_conf 4346888889999999999
No 251
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.13 E-value=16 Score=14.19 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 33388899999999999849989999999999861799989999999999997
Q gi|254780436|r 237 LDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDL 289 (298)
Q Consensus 237 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~l 289 (298)
.+|--..+.-.||.+-.+-|++.+|.+.|.+... |.+-+....+.+.+..++
T Consensus 162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH
T ss_conf 9701788999876888732246779999999970-146967799999999999
No 252
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.65 E-value=17 Score=14.15 Aligned_cols=29 Identities=10% Similarity=0.169 Sum_probs=23.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99999999849989999999999861799
Q gi|254780436|r 246 FNGGMVYEMQGSYANAVKYYKKALSVDSR 274 (298)
Q Consensus 246 ~~lg~~~~~~g~~~~A~~~~~kAl~l~P~ 274 (298)
..++.+|..+|+.+.|...++.++.-...
T Consensus 3 LDLA~aYiemGD~egAr~lL~EVi~eg~~ 31 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGDE 31 (44)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCH
T ss_conf 78999999829889899999999984999
No 253
>KOG2063 consensus
Probab=43.12 E-value=17 Score=14.10 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=13.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999999972985222211111111
Q gi|254780436|r 72 YNVRGVVYGMNGDFEKALLDFQSALD 97 (298)
Q Consensus 72 ~~~lg~~~~~~g~~~~A~~~~~~al~ 97 (298)
|..++..|...|++++|+..+.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99999999862655999999999723
No 254
>pfam11846 DUF3366 Domain of unknown function (DUF3366). This domain is functionally uncharacterized. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.78 E-value=17 Score=14.07 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=33.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Q ss_conf 22323338889999999999984998999999999986179998
Q gi|254780436|r 233 FAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYY 276 (298)
Q Consensus 233 ~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~ 276 (298)
+.++..| .+..+.+++.++..+|+.++|.+...++.-+-|...
T Consensus 136 ~~l~~~P-~p~~y~~la~~~~~~G~~~~A~~~~~~a~~lyP~~~ 178 (193)
T pfam11846 136 KLLRYKP-RPAVYRRLALALALLGKPAEARDWMAQARYLYPLAD 178 (193)
T ss_pred HHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 9987499-759999999999986999999999999998399723
No 255
>pfam01239 PPTA Protein prenyltransferase alpha subunit repeat. Both farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) recognize a CaaX motif on their substrates where 'a' stands for preferably aliphatic residues, whereas GGT2 recognizes a completely different motif. Important substrates for FT include, amongst others, many members of the Ras superfamily. GGT1 substrates include some of the other small GTPases and GGT2 substrates include the Rab family.
Probab=40.42 E-value=19 Score=13.86 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=10.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999998617999899999999999
Q gi|254780436|r 263 KYYKKALSVDSRYYRAKNGILRISQ 287 (298)
Q Consensus 263 ~~~~kAl~l~P~~~~a~~~la~i~~ 287 (298)
....+++..+|++..++...-.+++
T Consensus 4 ~~~~~~i~~~p~n~s~W~yR~~ll~ 28 (31)
T pfam01239 4 ELTEKLLELDPKNYSAWNYRRWLLE 28 (31)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 5899988119513678889999999
No 256
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit; InterPro: IPR016043 Virtually all mitochondrial precursors are imported via the same mechanism : precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 ..
Probab=40.29 E-value=19 Score=13.85 Aligned_cols=32 Identities=22% Similarity=0.055 Sum_probs=22.1
Q ss_pred HHHHHHHHHCC--CHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99999999849--989999999999861799989
Q gi|254780436|r 246 FNGGMVYEMQG--SYANAVKYYKKALSVDSRYYR 277 (298)
Q Consensus 246 ~~lg~~~~~~g--~~~~A~~~~~kAl~l~P~~~~ 277 (298)
..+|..+...| +.++|-.+|-+||.+.|.-.+
T Consensus 97 V~~GE~L~~q~P~~~~e~a~~fy~Al~Vyp~P~~ 130 (155)
T TIGR00985 97 VQLGEELLAQQPDKVKEAALHFYKALKVYPQPQD 130 (155)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9987785048995178999999988762799248
No 257
>TIGR02541 flagell_FlgJ flagellar rod assembly protein/muramidase FlgJ; InterPro: IPR013377 The N-terminal region of this protein acts directly in flagellar rod assembly, while the C-terminal region is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring .; GO: 0016798 hydrolase activity acting on glycosyl bonds, 0001539 ciliary or flagellar motility, 0009296 flagellum biogenesis, 0009288 flagellin-based flagellum.
Probab=39.33 E-value=15 Score=14.47 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 9989999999999861799989999
Q gi|254780436|r 256 GSYANAVKYYKKALSVDSRYYRAKN 280 (298)
Q Consensus 256 g~~~~A~~~~~kAl~l~P~~~~a~~ 280 (298)
+.|+||..+|-+.|.-+|.|..+..
T Consensus 273 sSY~eaF~DYa~lL~~nPRY~aVl~ 297 (332)
T TIGR02541 273 SSYEEAFSDYAKLLKNNPRYEAVLQ 297 (332)
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 4478999999987258845799973
No 258
>pfam08424 DUF1740 Protein of unknown function (DUF1740). This is a family of eukaryotic proteins of unknown function.
Probab=36.36 E-value=22 Score=13.50 Aligned_cols=37 Identities=11% Similarity=-0.004 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 8999999999998499899999999998617999899
Q gi|254780436|r 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRA 278 (298)
Q Consensus 242 ~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a 278 (298)
..++.++.....+.|-.+.|+..++-.++++=-.+..
T Consensus 157 l~lflr~~~flrqaG~~E~Aval~QA~lE~n~f~P~~ 193 (231)
T pfam08424 157 LYLFLRLCRFLRQAGYTELAVALWQALLEFNFFRPDL 193 (231)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHH
T ss_conf 9999999999998596899999999999882688366
No 259
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.97 E-value=24 Score=13.28 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=37.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999999849989999999999861799989999999999997428
Q gi|254780436|r 245 WFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSST 292 (298)
Q Consensus 245 ~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~ 292 (298)
...+|.--+..|+|.=+.+..++++--||++..|+.-.+.++..||=.
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYq 502 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQ 502 (655)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999887546601899997467716976188998877389885002
No 260
>pfam04053 Coatomer_WDAD Coatomer WD associated region. This region is composed of WD40 repeats.
Probab=31.10 E-value=27 Score=13.01 Aligned_cols=54 Identities=19% Similarity=0.176 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHH
Q ss_conf 3888999999999998499899999999998617--------99989999999999997428
Q gi|254780436|r 239 PKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD--------SRYYRAKNGILRISQDLSST 292 (298)
Q Consensus 239 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~--------P~~~~a~~~la~i~~~lg~~ 292 (298)
-++...|..||.....+|+++-|.++|+++-..+ ..+.+-...|+.+-...|+.
T Consensus 336 ~~~~~~Wk~Lg~~AL~~g~~~lAe~~~~k~~d~~~LllLy~~tG~~~~L~kl~~~a~~~g~~ 397 (435)
T pfam04053 336 LDDEHKWKRLGDAALSQGNIKLAEEAYQKAKDFDKLLLLYLSTGNKEKLKKLAKIAEERGDY 397 (435)
T ss_pred HCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 36799999999999974995899999997425345599999849999999999999984762
No 261
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=30.43 E-value=28 Score=12.95 Aligned_cols=28 Identities=32% Similarity=0.093 Sum_probs=12.4
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999972985222211111111111
Q gi|254780436|r 73 NVRGVVYGMNGDFEKALLDFQSALDLNP 100 (298)
Q Consensus 73 ~~lg~~~~~~g~~~~A~~~~~~al~~~~ 100 (298)
..+|.+....|++++|++..+.++..-|
T Consensus 462 aL~a~val~~~~~e~a~~lar~al~~L~ 489 (894)
T COG2909 462 ALRAQVALNRGDPEEAEDLARLALVQLP 489 (894)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 9999999845877899999999998661
No 262
>pfam09670 Cas_Cas02710 CRISPR-associated protein (Cas_Cas02710). Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=30.08 E-value=28 Score=12.91 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--HHHHH--HHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999999819989999999999981689989--99999--99999729852222111111111
Q gi|254780436|r 39 IEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPE--GYNVR--GVVYGMNGDFEKALLDFQSALDL 98 (298)
Q Consensus 39 ~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~--~~~~l--g~~~~~~g~~~~A~~~~~~al~~ 98 (298)
+..+..++..++|..|...++..+..-|.... .+..+ |......-++.+|.+.+++.+..
T Consensus 135 ~~~a~~lfn~~~y~~A~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f~~~~A~~~L~~~~~~ 198 (379)
T pfam09670 135 RRQAIRLFNKGDYGSALRILEDLARRLPGRKDYAAYKLLSEGYLAWDSFDHEEAADYLSKVLAL 198 (379)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999998845688999999999987379745799999999999998655899999999998875
No 263
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.57 E-value=27 Score=13.03 Aligned_cols=91 Identities=13% Similarity=0.070 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH--------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC--CCCCC
Q ss_conf 999999999998168998999999999997--------29852222111111111111111121100000001--12222
Q gi|254780436|r 52 RVNIDSLTAVIRAHPSDPEGYNVRGVVYGM--------NGDFEKALLDFQSALDLNPRYYKVYANRALIRYKM--GDVPM 121 (298)
Q Consensus 52 ~~Ai~~~~~al~~~P~~~~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~--~~~~~ 121 (298)
..|++.-+..+..+|..-..|+.+-.+... ..-.+.-+.....+++-+|++...+.....++... ..+..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 88887768998628899999863999996155411343033305789999998518841222689999997388865002
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 111111222211111112222
Q gi|254780436|r 122 AIRDYGTALKINPDYDVAYIG 142 (298)
Q Consensus 122 a~~~~~~~~~~~~~~~~~~~~ 142 (298)
......+.+..++.+...+..
T Consensus 129 El~itkklld~DsrNyH~W~Y 149 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSY 149 (328)
T ss_pred HHHHHHHHHCCCCCCCCEEEE
T ss_conf 699999986026654540445
No 264
>KOG1258 consensus
Probab=29.30 E-value=29 Score=12.84 Aligned_cols=75 Identities=9% Similarity=-0.017 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1111122211122323-33888999999999998499899999999998617999899999999999974288874
Q gi|254780436|r 222 KNYDSALEDFKFAINL-DPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296 (298)
Q Consensus 222 ~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kAl~l~P~~~~a~~~la~i~~~lg~~~~~~ 296 (298)
++..-+-.....+.+. .|..+.+...-+..-...|++..|...+++..+--|+...+-..-..+...+|++....
T Consensus 345 ~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258 345 GDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 7626777999743211077870799999999996246999999999988657763556778876999834245566
No 265
>KOG2518 consensus
Probab=26.41 E-value=33 Score=12.55 Aligned_cols=32 Identities=6% Similarity=0.163 Sum_probs=21.6
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99999999819989999999999981689989
Q gi|254780436|r 39 IEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPE 70 (298)
Q Consensus 39 ~~~~~~~~~~~~~~~Ai~~~~~al~~~P~~~~ 70 (298)
...+..+...|+-.+|.++|++++.+.|+-+.
T Consensus 100 ~~~a~~ll~~G~~~~A~~~fqr~VdIT~~ma~ 131 (556)
T KOG2518 100 LDAAEQLLAEGKESNARECFQRCVDITPEMAH 131 (556)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999768988899999876117699999
No 266
>TIGR00756 PPR pentatricopeptide repeat domain; InterPro: IPR002885 Pentatricopeptide repeat proteins are characterised by the presence of a tandem array of repeats, where the number of PPR motifs controls the affinity and specificity of the PPR protein for RNA. These proteins occur predominantly in plants, where they appear to play essential roles in RNA/DNA metabolism in mitochondria and chloroplasts . It has been suggested that each of the highly variable PPR proteins is a gene-specific regulator of plant organellar RNA metabolism. PPR proteins may also play a role in organelle biogenesis, probably via binding to organellar transcripts . Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation , and crp1, which is involved in RNA processing . The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organization similar to the human BRCA1 protein..
Probab=22.33 E-value=40 Score=12.10 Aligned_cols=27 Identities=7% Similarity=-0.055 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999984998999999999986
Q gi|254780436|r 244 FWFNGGMVYEMQGSYANAVKYYKKALS 270 (298)
Q Consensus 244 ~~~~lg~~~~~~g~~~~A~~~~~kAl~ 270 (298)
+|..+=.+|-+.|++++|++.|++-.+
T Consensus 2 ~yn~li~~~~~~g~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFDEMKE 28 (35)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 389889998628987899999999987
No 267
>KOG3677 consensus
Probab=22.03 E-value=40 Score=12.07 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=8.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999999984998999999999
Q gi|254780436|r 247 NGGMVYEMQGSYANAVKYYKK 267 (298)
Q Consensus 247 ~lg~~~~~~g~~~~A~~~~~k 267 (298)
..|.+|..+++|.+|+..|-+
T Consensus 277 ~VGFayLmmrryadai~~F~n 297 (525)
T KOG3677 277 QVGFAYLMMRRYADAIRVFLN 297 (525)
T ss_pred EHHHHHHHHHHHHHHHHHHHH
T ss_conf 045899999989999999999
Done!