HHsearch alignment for GI: 254780436 and conserved domain: pfam04733

>pfam04733 Coatomer_E Coatomer epsilon subunit. This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.
Probab=98.08  E-value=3.3e-06  Score=50.51  Aligned_cols=192  Identities=16%  Similarity=0.143  Sum_probs=122.9

Q ss_pred             CCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
Q ss_conf             99899999999999--8168998999999999997298522221111111111111111211000000011222211111
Q gi|254780436|r   49 MGRRVNIDSLTAVI--RAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDY  126 (298)
Q Consensus        49 ~~~~~Ai~~~~~al--~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  126 (298)
T Consensus        80 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~aati~~~~g~~e~AL~~l~~~-----~~lE~~al~VQi~L~~nR~DLA~ke~  154 (290)
T pfam04733        80 SRKESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDALKHLHKG-----ENLEAMALNVQILLKMHRIDLAEQQL  154 (290)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             1145699999999874015667899999999999779999999998558-----96679999999999728836799999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             12222111111122222222222111111111112111122222222222222221111111112221211111111222
Q gi|254780436|r  127 GTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSI  206 (298)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (298)
T Consensus       155 ~~~q~~~eDs~l--~qLa~awv~l~~G--------------------------------gek~q~A~yif~EL-~~~~~~  199 (290)
T pfam04733       155 KKMQQIDEDATL--TQLANAWVKLAVG--------------------------------GEKIQDAYYIFQEF-SEKYDS  199 (290)
T ss_pred             HHHHHCCCCHHH--HHHHHHHHHHHHC--------------------------------CHHHHHHHHHHHHH-HHHCCC
T ss_conf             998843510599--9999999999726--------------------------------47789899999999-852289


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHCCCCHHHHH
Q ss_conf             122222222222111111112221112232333888999999999998499899999-99999861799989999
Q gi|254780436|r  207 SPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVK-YYKKALSVDSRYYRAKN  280 (298)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~kAl~l~P~~~~a~~  280 (298)
T Consensus       200 t~lllng~Av~~m~~~~~~eAe~~L~eAl~~d~~d~dtlaNliv~s~~~gK~~e~~~ryl~qL~~~~p~H~~v~~  274 (290)
T pfam04733       200 TPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLINLVVCALHLGKPAEVSNRNLSQLKLSHPTHPLVKD  274 (290)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf             789999999999874787999999999987288988999999999998099878999999999862999859999