HHsearch alignment for GI: 254780436 and conserved domain: pfam04733
>pfam04733 Coatomer_E Coatomer epsilon subunit. This family represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex.
Probab=98.08 E-value=3.3e-06 Score=50.51 Aligned_cols=192 Identities=16% Similarity=0.143 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
Q ss_conf 99899999999999--8168998999999999997298522221111111111111111211000000011222211111
Q gi|254780436|r 49 MGRRVNIDSLTAVI--RAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDY 126 (298)
Q Consensus 49 ~~~~~Ai~~~~~al--~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 126 (298)
T Consensus 80 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~aati~~~~g~~e~AL~~l~~~-----~~lE~~al~VQi~L~~nR~DLA~ke~ 154 (290)
T pfam04733 80 SRKESILASLKEWVADSHIGSNSTLRLLAAIIFIHEGDFDDALKHLHKG-----ENLEAMALNVQILLKMHRIDLAEQQL 154 (290)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC-----CCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 1145699999999874015667899999999999779999999998558-----96679999999999728836799999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12222111111122222222222111111111112111122222222222222221111111112221211111111222
Q gi|254780436|r 127 GTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSI 206 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (298)
T Consensus 155 ~~~q~~~eDs~l--~qLa~awv~l~~G--------------------------------gek~q~A~yif~EL-~~~~~~ 199 (290)
T pfam04733 155 KKMQQIDEDATL--TQLANAWVKLAVG--------------------------------GEKIQDAYYIFQEF-SEKYDS 199 (290)
T ss_pred HHHHHCCCCHHH--HHHHHHHHHHHHC--------------------------------CHHHHHHHHHHHHH-HHHCCC
T ss_conf 998843510599--9999999999726--------------------------------47789899999999-852289
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHCCCCHHHHH
Q ss_conf 122222222222111111112221112232333888999999999998499899999-99999861799989999
Q gi|254780436|r 207 SPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVK-YYKKALSVDSRYYRAKN 280 (298)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~~~kAl~l~P~~~~a~~ 280 (298)
T Consensus 200 t~lllng~Av~~m~~~~~~eAe~~L~eAl~~d~~d~dtlaNliv~s~~~gK~~e~~~ryl~qL~~~~p~H~~v~~ 274 (290)
T pfam04733 200 TPLLLNGQAVCCMCLGRYEEAESLLKEALDKDAKDPETLINLVVCALHLGKPAEVSNRNLSQLKLSHPTHPLVKD 274 (290)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 789999999999874787999999999987288988999999999998099878999999999862999859999