RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780436|ref|YP_003064849.1| hypothetical protein
CLIBASIA_01605 [Candidatus Liberibacter asiaticus str. psy62]
(298 letters)
>gnl|CDD|163072 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 77.0 bits (190), Expect = 5e-15
Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 13/225 (5%)
Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRD 125
P + +N+ G +Y GD KA F+ AL + P ++ AN A I + G+ AI+
Sbjct: 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521
Query: 126 YGTALKINPDYDVAYIGRGNIY-RDERYSD----LQKAFADFDRAIQLKTSDGRAWYGRA 180
+ L I+P A + +Y R + L+KA + I+ + +
Sbjct: 522 FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQY----- 576
Query: 181 LVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240
Y +G+ +K++ ++A SP+ + G + LA + + A+ FK + L P
Sbjct: 577 --YLGKGQLKKALAILNEAADAAPD-SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633
Query: 241 KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRI 285
A Y + +YA A+ K+AL + A+ G+ ++
Sbjct: 634 SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678
Score = 69.0 bits (169), Expect = 1e-12
Identities = 47/207 (22%), Positives = 77/207 (37%), Gaps = 6/207 (2%)
Query: 64 AHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAI 123
A P PE + + G GD KA+ F+ L L P A M + AI
Sbjct: 596 AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAI 655
Query: 124 RDYGTALKINPDYDVAYIGRGNIYRDE-RYSDLQKAFADFDRAIQLKTSDGRAWYGRALV 182
AL++ PD A IG + R +K + K + G G +
Sbjct: 656 TSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGD--L 712
Query: 183 YQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKA 242
Y + +Y +I+ + +A+ S R + LA+ N A++ + + P A
Sbjct: 713 YLRQKDYPAAIQAYRKALKRAPSSQNAIKLHR--ALLASGNTAEAVKTLEAWLKTHPNDA 770
Query: 243 SFWFNGGMVYEMQGSYANAVKYYKKAL 269
+Y Q Y A+K+Y+ +
Sbjct: 771 VLRTALAELYLAQKDYDKAIKHYRTVV 797
Score = 66.6 bits (163), Expect = 7e-12
Identities = 62/267 (23%), Positives = 99/267 (37%), Gaps = 47/267 (17%)
Query: 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK------------- 104
A+++ P+ P + ++ +V ++E A Q AL P Y
Sbjct: 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLG 309
Query: 105 -------------------VYANR--ALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGR 143
A R A I+ ++G V AI AL ++PD A
Sbjct: 310 NLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLL 369
Query: 144 GNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLY 203
G Y D +KA +A +L + A + +G+ ++I D A L
Sbjct: 370 GEAYLALG--DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQL- 426
Query: 204 SSISPDYYNGRG-----ISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSY 258
D GR +SYL + +D AL K P AS G +Y +G
Sbjct: 427 -----DPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDL 481
Query: 259 ANAVKYYKKALSVDSRYYRAKNGILRI 285
A A + ++KALS++ ++ A + RI
Sbjct: 482 AKAREAFEKALSIEPDFFPAAANLARI 508
Score = 63.9 bits (156), Expect = 4e-11
Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 37/248 (14%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
I +L+ + P DP ++ G Y GDFEKA A +L+P + +
Sbjct: 349 IATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL 408
Query: 115 KMGDVPMAIRDYGTALKINPDYDVA-------YIGRGNIYRDERYSDLQKAFADFDRAIQ 167
GD AI D TA +++P+ A Y+ G KA A + +
Sbjct: 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG---------QFDKALAAAKKLEK 459
Query: 168 LKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLA-----TK 222
+ + +Y +G+ K+ E F +A+ SI PD++ + LA
Sbjct: 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKAL----SIEPDFF--PAAANLARIDIQEG 513
Query: 223 NYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD---------- 272
N D A++ F+ + +DPK +Y G+ AV + +KA ++
Sbjct: 514 NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALAL 573
Query: 273 SRYYRAKN 280
++YY K
Sbjct: 574 AQYYLGKG 581
Score = 61.6 bits (150), Expect = 2e-10
Identities = 51/267 (19%), Positives = 95/267 (35%), Gaps = 39/267 (14%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANR--ALI 112
++L +++ P + G G+ E+A L P A R A I
Sbjct: 281 RETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPN--SHQARRLLASI 338
Query: 113 RYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSD 172
+ ++G V AI AL ++PD A G Y D +KA +A +L +
Sbjct: 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALG--DFEKAAEYLAKATELDPEN 396
Query: 173 GRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSI-------------------------- 206
A + +G+ ++I D A L +
Sbjct: 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKK 456
Query: 207 -------SPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYA 259
+ +N G YL + A E F+ A++++P N + +G+
Sbjct: 457 LEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516
Query: 260 NAVKYYKKALSVDSRYYRAKNGILRIS 286
+A++ ++K L++D + RA + +
Sbjct: 517 DAIQRFEKVLTIDPKNLRAILALAGLY 543
Score = 55.1 bits (133), Expect = 2e-08
Identities = 45/245 (18%), Positives = 81/245 (33%), Gaps = 45/245 (18%)
Query: 82 NGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYI 141
F++A L +P + + +G++ +A+ Y A+ + P+ +
Sbjct: 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLL 231
Query: 142 GRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAIS 201
I + + ++A D ++ + A Y +ALV + YE + E A+
Sbjct: 232 ALATILIEAG--EFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDAL- 288
Query: 202 LYSSISPDYYNGR---GISY----------------------------------LATKNY 224
+P+Y G S L
Sbjct: 289 ---KSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRV 345
Query: 225 DSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR--YYRAKNGI 282
D A+ A+ LDP + G Y G + A +Y KA +D R + GI
Sbjct: 346 DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGI 405
Query: 283 LRISQ 287
++SQ
Sbjct: 406 SKLSQ 410
Score = 51.2 bits (123), Expect = 3e-07
Identities = 36/203 (17%), Positives = 74/203 (36%), Gaps = 6/203 (2%)
Query: 79 YGMNGDFEKALLDF--QSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDY 136
Y + G F++ L + ++ LD + ++ A R L +G + +A + Y AL I+P
Sbjct: 100 YLLQGKFQQVLDELPGKTLLD-DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRS 158
Query: 137 DVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDF 196
Y G + +A A D + + A + + G E ++ +
Sbjct: 159 --LYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216
Query: 197 SQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQG 256
+AI+L + + ++ A + + P + +V +
Sbjct: 217 RKAIALRPNNPAVLLA-LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKK 275
Query: 257 SYANAVKYYKKALSVDSRYYRAK 279
+Y +A + + AL Y A
Sbjct: 276 NYEDARETLQDALKSAPEYLPAL 298
Score = 49.3 bits (118), Expect = 1e-06
Identities = 41/203 (20%), Positives = 79/203 (38%), Gaps = 11/203 (5%)
Query: 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKM--GDVPMAIRDYGTA 129
+RG+ Y G E A ++ AL ++PR +YA L + + A
Sbjct: 128 LALRGLAYLGLGQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAENRFDEARALIDEV 185
Query: 130 LKINPDYDVAYIGRGNIYRDERYS-DLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGE 188
L +P A + +G++ +++ A A + +AI L+ ++ A + GE
Sbjct: 186 LTADPGNVDALLLKGDL---LLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGE 242
Query: 189 YEKSIEDFSQAISLY-SSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFN 247
+E++ + + +S Y + + KNY+ A E + A+ P+
Sbjct: 243 FEEAEKHADALLKKAPNSPLAHYLKAL-VDFQK-KNYEDARETLQDALKSAPEYLPALLL 300
Query: 248 GGMVYEMQGSYANAVKYYKKALS 270
G G+ A +Y + L
Sbjct: 301 AGASEYQLGNLEQAYQYLNQILK 323
Score = 42.4 bits (100), Expect = 1e-04
Identities = 26/72 (36%), Positives = 33/72 (45%)
Query: 199 AISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSY 258
A+S SP+ SYL Y +A+ K A+ DP A F G +Y G Y
Sbjct: 13 ALSACGDQSPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDY 72
Query: 259 ANAVKYYKKALS 270
A A K +KALS
Sbjct: 73 AAAEKELRKALS 84
Score = 42.4 bits (100), Expect = 1e-04
Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
Query: 117 GDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAW 176
AI AL+ +P+ A G IY D A + +A+ L +
Sbjct: 36 NKYKAAIIQLKNALQKDPNDAEARFLLGKIYLAL--GDYAAAEKELRKALSLGYPKNQVL 93
Query: 177 YGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAIN 236
A Y ++G++++ +++ L + + RG++YL + A + ++ A+
Sbjct: 94 PLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALA 153
Query: 237 LDPKKAS 243
+DP+
Sbjct: 154 IDPRSLY 160
Score = 38.9 bits (91), Expect = 0.002
Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 36/224 (16%)
Query: 68 DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNP-----RYY--KVYANRALIRYKMGDVP 120
PE Y ++ A++ ++AL +P R+ K+Y +GD
Sbjct: 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYL-------ALGDYA 73
Query: 121 MAIRDYGTAL-------KINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDG 173
A ++ AL ++ P AY+ +G + + D A L
Sbjct: 74 AAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLAL--- 130
Query: 174 RAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDY-YNGRGISYLAT--KNYDSALED 230
R L Y G+ E + + + QA++ I P Y G++ LA +D A
Sbjct: 131 -----RGLAYLGLGQLELAQKSYEQALA----IDPRSLYAKLGLAQLALAENRFDEARAL 181
Query: 231 FKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR 274
+ DP G + G+ A+ Y+KA+++
Sbjct: 182 IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225
Score = 37.0 bits (86), Expect = 0.006
Identities = 41/223 (18%), Positives = 79/223 (35%), Gaps = 48/223 (21%)
Query: 64 AHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYK-VYANRALIRYKMGDVPMA 122
HP G+ + G +Y D+ A+ ++ AL P + +RAL+ G+ A
Sbjct: 698 QHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLA--SGNTAEA 755
Query: 123 IRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALV 182
++ LK +P+ D A +
Sbjct: 756 VKTLEAWLKTHPN------------------------------------DAVLRTALAEL 779
Query: 183 YQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDS-ALEDFKFAINLDPKK 241
Y + +Y+K+I+ + + + N +++L + D ALE + A+ L P
Sbjct: 780 YLAQKDYDKAIKHYRTVVKKAPDNAVVLNN---LAWLYLELKDPRALEYAEKALKLAPNI 836
Query: 242 ASFWFNGGMVYEMQGSYANAVKYYKKALS-----VDSRYYRAK 279
+ G + +G A+ +KA++ RY+ A
Sbjct: 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL 879
>gnl|CDD|162147 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70).
Length = 615
Score = 71.6 bits (175), Expect = 2e-13
Identities = 50/219 (22%), Positives = 89/219 (40%), Gaps = 12/219 (5%)
Query: 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALK 131
N+RG + G +AL D +++L+PR + Y RA + ++GD A D+ ALK
Sbjct: 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALK 393
Query: 132 INPDYDVAYIGRGNI-YRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYE 190
+N + Y R + + ++ K D+ ++I L + + G
Sbjct: 394 LNSEDPDIYYHRAQLHFIKGEFAQAGK---DYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450
Query: 191 KSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASFWFN--- 247
S+ F + + PD YN G L +D A+E F AI L+ + + N
Sbjct: 451 SSMATFRRCKKNFPEA-PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509
Query: 248 ----GGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGI 282
+++ + + A +KAL +D A +
Sbjct: 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATM 548
Score = 55.8 bits (134), Expect = 1e-08
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 14/220 (6%)
Query: 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMG 117
L+ I P + Y R + GD +KA DF AL LN +Y +RA + + G
Sbjct: 354 LSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG 413
Query: 118 DVPMAIRDYGTALKINPDYDVAYIGRGNI-YRDERYSDLQKAFADFDRAIQL--KTSDGR 174
+ A +DY ++ ++PD+ ++I G Y++ + + A F R + + D
Sbjct: 414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIAS---SMATFRRCKKNFPEAPDVY 470
Query: 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYN-----GRGISYLATK-NYDSAL 228
+YG L+ Q +++++IE F AI L P Y N + ++ K ++ A
Sbjct: 471 NYYGELLLDQ--NKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528
Query: 229 EDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKA 268
+ A+ +DP+ + QG A+K +++A
Sbjct: 529 NLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568
Score = 45.0 bits (106), Expect = 2e-05
Identities = 57/255 (22%), Positives = 93/255 (36%), Gaps = 49/255 (19%)
Query: 68 DPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYG 127
DP Y+ R + GD+EK + D +AL+L+P Y K RA +G A+ D
Sbjct: 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL- 217
Query: 128 TALKINPDYDVAYIGRGNIYRDERYSDLQKA----------------------------- 158
TA I + + + R + KA
Sbjct: 218 TASCIIDGFRNEQSAQA-VERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR 276
Query: 159 FADFDRAIQLKTSDGRAW---YGRALVYQMRGEYEKSIEDFSQAISL-----YSSISPDY 210
A + + +L G ++ + YE++ F +A+ L +I+
Sbjct: 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIA--- 333
Query: 211 YNGRGISYLATKNYDSALEDFKFAINLDPK-KASFWFNGGMVYEMQGSYANAVKYYKKAL 269
N RG + AL D +I LDP+ S+ M E+ G A + + KAL
Sbjct: 334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLEL-GDPDKAEEDFDKAL 392
Query: 270 SVDSR-----YYRAK 279
++S Y+RA+
Sbjct: 393 KLNSEDPDIYYHRAQ 407
Score = 33.8 bits (77), Expect = 0.057
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 82 NGDFEKALLDFQSALDL--NPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVA 139
N DF KA+ + A++ +P YY +NRA +GD + D AL+++PDY A
Sbjct: 140 NKDFNKAIKLYSKAIECKPDPVYY---SNRAACHNALGDWEKVVEDTTAALELDPDYSKA 196
Query: 140 YIGRGNIYRDERYSDLQKAFADF 162
R N Y + A D
Sbjct: 197 LNRRANAY--DGLGKYADALLDL 217
Score = 33.0 bits (75), Expect = 0.11
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 161 DFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSI-----SPDYYNGRG 215
D L + + + A + +G +DF++AI LYS P YY+ R
Sbjct: 111 DESSVANLSEEERKKY---AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRA 167
Query: 216 ISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAV 262
+ A +++ +ED A+ LDP + Y+ G YA+A+
Sbjct: 168 ACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214
Score = 31.5 bits (71), Expect = 0.27
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 90 LDFQSALDLNPRYYKVYA-------NRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIG 142
+D S +L+ K YA N+A Y+ D AI+ Y A++ PD V Y
Sbjct: 110 IDESSVANLSEEERKKYAAKLKEKGNKA---YRNKDFNKAIKLYSKAIECKPD-PVYYSN 165
Query: 143 RGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFS 197
R + D +K D A++L +A RA Y G+Y ++ D +
Sbjct: 166 RAACH--NALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT 218
>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein
PilW. Members of this family are designated PilF in ref
(PubMed:8973346) and PilW in ref (PubMed:15612916). This
outer membrane protein is required both for pilus
stability and for pilus function such as adherence to
human cells. Members of this family contain copies of
the TPR (tetratricopeptide repeat) domain.
Length = 234
Score = 67.0 bits (164), Expect = 5e-12
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 9/168 (5%)
Query: 104 KVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFD 163
K+ AL + GD+ +A + AL+ +PD +AY+ Y ++ +L+KA F
Sbjct: 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYY--QQLGELEKAEDSFR 89
Query: 164 RAIQLKTSDGRAW--YGRALVYQMRGEYEKSIEDFSQAIS--LYSSISPDYYNGRGISYL 219
RA+ L ++G YG L Q G+YE++++ F QAI LY + N G+ L
Sbjct: 90 RALTLNPNNGDVLNNYGTFLCQQ--GKYEQAMQQFEQAIEDPLYPQPARSLEN-AGLCAL 146
Query: 220 ATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKK 267
++D A + A+ +DP++ +Y ++G Y +A Y ++
Sbjct: 147 KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194
Score = 63.9 bits (156), Expect = 4e-11
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 117 GDVPMAIRDYG--TALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGR 174
DVP + R A KI + Y+ +G DL+ A + D+A++ D
Sbjct: 16 PDVPRSSRTTDRNKAAKIRVQLALGYLEQG---------DLEVAKENLDKALEHDPDDYL 66
Query: 175 AWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFA 234
A+ AL YQ GE EK+ + F +A++L + + D N G Y+ A++ F+ A
Sbjct: 67 AYLALALYYQQLGELEKAEDSFRRALTL-NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA 125
Query: 235 IN--LDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRA 278
I L P+ A N G+ G + A KY +AL +D + +
Sbjct: 126 IEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPES 171
Score = 39.2 bits (92), Expect = 0.001
Identities = 35/142 (24%), Positives = 54/142 (38%), Gaps = 6/142 (4%)
Query: 51 RRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRA 110
V ++L + P D Y + Y G+ EKA F+ AL LNP V N
Sbjct: 47 LEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYG 106
Query: 111 LIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNI---YRDERYSDLQKAFADFDRAIQ 167
+ G A++ + A++ +P Y N D KA RA+Q
Sbjct: 107 TFLCQQGKYEQAMQQFEQAIE-DPLYPQPARSLENAGLCALKA--GDFDKAEKYLTRALQ 163
Query: 168 LKTSDGRAWYGRALVYQMRGEY 189
+ + A +Y +RG+Y
Sbjct: 164 IDPQRPESLLELAELYYLRGQY 185
Score = 38.1 bits (89), Expect = 0.002
Identities = 13/66 (19%), Positives = 27/66 (40%)
Query: 215 GISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSR 274
+ YL + + A E+ A+ DP + + Y+ G A +++AL+++
Sbjct: 38 ALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN 97
Query: 275 YYRAKN 280
N
Sbjct: 98 NGDVLN 103
Score = 26.9 bits (60), Expect = 5.9
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 65 HPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMA 122
P+ G+ GDF+KA AL ++P+ + A + Y G A
Sbjct: 133 QPARS--LENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188
>gnl|CDD|162919 TIGR02552, LcrH_SycD, type III secretion low calcium response
chaperone LcrH/SycD. ScyD/LcrH contains three central
tetratricopeptide-like repeats that are predicted to
fold into an all-alpha-helical array.
Length = 135
Score = 48.4 bits (116), Expect = 2e-06
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 136 YDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIED 195
Y +AY N+Y+ RY + K F + R W G A QM EYE++I+
Sbjct: 21 YALAY----NLYQQGRYDEALKLFQLL---AAYDPYNSRYWLGLAACCQMLKEYEEAIDA 73
Query: 196 FSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF 244
++ A +L P Y LA +SAL+ AI + + +
Sbjct: 74 YALAAALDPD-DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121
Score = 33.8 bits (78), Expect = 0.059
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 220 ATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272
YD AL+ F+ DP + +W +M Y A+ Y A ++D
Sbjct: 29 QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81
Score = 31.1 bits (71), Expect = 0.33
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 183 YQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKA 242
YQ +G Y+++++ F Q ++ Y + Y+ G K Y+ A++ + A LDP
Sbjct: 28 YQ-QGRYDEALKLF-QLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP 85
Query: 243 SFWFNGGMVYEMQGSYANAVKYYKKAL 269
+F+ G +A+K A+
Sbjct: 86 RPYFHAAECLLALGEPESALKALDLAI 112
>gnl|CDD|183140 PRK11447, PRK11447, cellulose synthase subunit BcsC; Provisional.
Length = 1157
Score = 44.3 bits (105), Expect = 3e-05
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 16/141 (11%)
Query: 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALI---RY 114
L +RA+P D E G Y GD +A+ F+ AL L+P +L+ RY
Sbjct: 292 LQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351
Query: 115 -----------KMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFD 163
K ++ A R Y A +++ A +G G++ + D A +
Sbjct: 352 WLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK--DYAAAERYYQ 409
Query: 164 RAIQLKTSDGRAWYGRALVYQ 184
+A+++ + A G A +Y+
Sbjct: 410 QALRMDPGNTNAVRGLANLYR 430
Score = 28.1 bits (63), Expect = 2.9
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 214 RGISYLATKNYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVD 272
+G++ + + A+ + + A+ +PK + G Y QG A AV ++KAL++D
Sbjct: 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD 333
>gnl|CDD|183026 PRK11189, PRK11189, lipoprotein NlpI; Provisional.
Length = 296
Score = 44.1 bits (105), Expect = 4e-05
Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 19/179 (10%)
Query: 66 PSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRD 125
P + YN G+ G+F+ A F S L+L+P Y Y NR + Y G +A D
Sbjct: 95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD 154
Query: 126 YGTALKINPD--YDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVY 183
+ +P+ Y + +Y E D ++A + + + D W G +V
Sbjct: 155 LLAFYQDDPNDPYRALW-----LYLAESKLDPKQAKENL--KQRYEKLDKEQW-GWNIVE 206
Query: 184 QMRGEYEKSIEDFSQAISLYSSISPDY-------YNGRGISYLATKNYDSALEDFKFAI 235
G + S E + + ++ + + Y YL+ + D A FK A+
Sbjct: 207 FYLG--KISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263
Score = 40.6 bits (96), Expect = 4e-04
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 195 DFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDP 239
DFSQA++L + D YN GI N+D+A E F + LDP
Sbjct: 86 DFSQALALRPDM-ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP 129
Score = 40.3 bits (95), Expect = 7e-04
Identities = 45/172 (26%), Positives = 66/172 (38%), Gaps = 34/172 (19%)
Query: 27 LLSVLVVSVILLIEGCSS--------------LFPS---------MGRRVNIDSLTAVIR 63
L V+ LL+ GCSS L P+ + + + LT R
Sbjct: 4 FLRWCFVATALLLAGCSSSNSSWRKNEVLAVPLQPTLQQEVILARLNQILASRDLTDEER 63
Query: 64 AHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY-KMGDVPMA 122
A + + RGV+Y G A DF AL L P Y N I + G+ A
Sbjct: 64 A-----QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAY-NYLGIYLTQAGNFDAA 117
Query: 123 IRDYGTALKINPDYDVAYIGRG-NIYRDERYSDLQKAFADFDRAIQLKTSDG 173
+ + L+++P Y+ AY+ RG +Y RY + A D Q +D
Sbjct: 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRY---ELAQDDLLAFYQDDPNDP 166
>gnl|CDD|178637 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1;
Provisional.
Length = 356
Score = 40.5 bits (95), Expect = 6e-04
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 84 DFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGR 143
DF A+ + A+DL+P ++YA+RA K+G+ A+ D A++++P AY+ +
Sbjct: 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76
Query: 144 GN-IYRDERYSDLQKAFADFDRAIQLKTSDGR 174
G + E Y Q A A ++ L D R
Sbjct: 77 GTACMKLEEY---QTAKAALEKGASLAPGDSR 105
Score = 31.7 bits (72), Expect = 0.22
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 55 IDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
+D T I P++ E Y R G+F +A+ D A++L+P K Y
Sbjct: 22 VDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAY-------L 74
Query: 115 KMGDVPMAIRDYGTA 129
+ G M + +Y TA
Sbjct: 75 RKGTACMKLEEYQTA 89
Score = 29.0 bits (65), Expect = 1.5
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 156 QKAFAD--FDRAIQLKT-------SDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSI 206
++AF D F A+ L T ++ + RA G + +++ D ++AI L S+
Sbjct: 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL 69
Query: 207 SPDYYNGRGISYLATKNYDSALEDFKFAINLDPKKASF 244
+ Y +G + + + Y +A + +L P + F
Sbjct: 70 AKAYLR-KGTACMKLEEYQTAKAALEKGASLAPGDSRF 106
Score = 26.3 bits (58), Expect = 8.9
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 223 NYDSALEDFKFAINLDPKKASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRA 278
++ A++ + AI+LDP A + + G++ AV KA+ +D +A
Sbjct: 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA 72
>gnl|CDD|179448 PRK02603, PRK02603, photosystem I assembly protein Ycf3;
Provisional.
Length = 172
Score = 39.3 bits (92), Expect = 0.001
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 72 YNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGD 118
YN+ G++Y NG+ +KAL + AL+LNP+ N A+I +K G+
Sbjct: 76 YNM-GIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121
Score = 37.0 bits (86), Expect = 0.007
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 169 KTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSI---SPDYYNGRGISYLATKNYD 225
K + +Y + Q GEY +++E++ +A+ L S YN GI Y + +D
Sbjct: 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYN-MGIIYASNGEHD 89
Query: 226 SALEDFKFAINLDPKKASFWFNGGMVYEMQGSYA-------NAVKYYKKALSVDSRYYR- 277
ALE + A+ L+PK+ S N ++Y +G A A + KA + R
Sbjct: 90 KALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149
Query: 278 AKNGILRISQDLSST 292
A N + L +T
Sbjct: 150 APNNYIEAQNWLKTT 164
Score = 30.8 bits (70), Expect = 0.42
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 10/93 (10%)
Query: 82 NGDFEKALLDFQSALDL----NPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYD 137
+G++ +AL +++ AL L N R Y +Y N +I G+ A+ Y AL++NP
Sbjct: 48 DGEYAEALENYEEALKLEEDPNDRSYILY-NMGIIYASNGEHDKALEYYHQALELNPKQP 106
Query: 138 VAYIGRGNIY-----RDERYSDLQKAFADFDRA 165
A IY + E D +A A FD+A
Sbjct: 107 SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKA 139
Score = 26.9 bits (60), Expect = 6.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 235 INLDPKKASFWFNGGMVYEMQGSYANAVKYYKKAL 269
IN K+A ++ GM + G YA A++ Y++AL
Sbjct: 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEAL 62
>gnl|CDD|163209 TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO.
Members of this protein family include YfiO, a
near-essential protein of the outer membrane, part of a
complex involved in protein insertion into the bacterial
outer membrane. Many proteins in this family are
annotated as ComL, based on the involvement of this
protein in natural transformation with exogenous DNA in
Neisseria gonorrhoeae. This protein family shows
sequence similarity to, but is distinct from, the
tol-pal system protein YbgF (TIGR02795).
Length = 235
Score = 38.3 bits (90), Expect = 0.003
Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 31/157 (19%)
Query: 27 LLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTAVIRAHPSDPEGYNVRGVVYGMNGDFE 86
LL +L+++++LL+ GCSS V E +GD+
Sbjct: 2 LLLILLLALLLLLAGCSSKKKKEADPVEEWP-----------AEELYEEAKEALDSGDYT 50
Query: 87 KALLDFQSALDLNPRYYKVYANRALIR-----YKMGDVPMAIRDYGTALKINP---DYDV 138
+A+ F++ P + YA +A + YK GD AI ++++P D D
Sbjct: 51 EAIKYFEALESRYP--FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108
Query: 139 AYIGRGNIY--------RDERYSDLQKAFADFDRAIQ 167
AY RG RD+ + ++AF F I+
Sbjct: 109 AYYLRGLSNYNQIDRVDRDQTAA--REAFEAFQELIR 143
>gnl|CDD|128343 smart00028, TPR, Tetratricopeptide repeats. Repeats present in 4
or more copies in proteins. Contain a minimum of 34
amino acids each and self-associate via a "knobs and
holes" mechanism.
Length = 34
Score = 37.0 bits (87), Expect = 0.006
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 174 RAWYGRALVYQMRGEYEKSIEDFSQAISL 202
A Y Y G+Y++++E + +A+ L
Sbjct: 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30
Score = 37.0 bits (87), Expect = 0.006
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 208 PDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240
+ G +YL +YD ALE ++ A+ LDP
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
Score = 35.9 bits (84), Expect = 0.013
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 69 PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY 102
E G Y GD+++AL ++ AL+L+P
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 35.9 bits (84), Expect = 0.014
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 103 YKVYANRALIRYKMGDVPMAIRDYGTALKINPDY 136
+ N K+GD A+ Y AL+++P+
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
Score = 32.4 bits (75), Expect = 0.13
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275
A +N G Y G Y A++YY+KAL +D
Sbjct: 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
>gnl|CDD|182072 PRK09782, PRK09782, bacteriophage N4 receptor, outer membrane
subunit; Provisional.
Length = 987
Score = 37.2 bits (86), Expect = 0.006
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 24/142 (16%)
Query: 93 QSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERY 152
Q L N Y+ ++A R Y G +A+ D +L I P + AY+ R IYR
Sbjct: 570 QRGLGDNALYWWLHAQR----YIPGQPELALNDLTRSLNIAPSAN-AYVARATIYRQRH- 623
Query: 153 SDLQKAFADFDRAIQLK--TSDGRAWYGRAL-----VYQMRGEYEKSIEDFSQAISLYSS 205
++ A +D A++L+ S+ +A G AL + Q R E++ +
Sbjct: 624 -NVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD------- 675
Query: 206 ISPDYYNGRGISYLATKNYDSA 227
D R ++Y+ + D A
Sbjct: 676 ---DPALIRQLAYVNQRLDDMA 694
Score = 34.9 bits (80), Expect = 0.028
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 83 GDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVPMAIRDYGTALKINPD------- 135
G E AL D +L++ P A RA I + +VP A+ D AL++ P+
Sbjct: 590 GQPELALNDLTRSLNIAPSANAYVA-RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAA 648
Query: 136 YDVAYIGRGNIYRDERYSDLQKAFADF 162
A G+I + L++A
Sbjct: 649 LGYALWDSGDIAQSREM--LERAHKGL 673
>gnl|CDD|149015 pfam07719, TPR_2, Tetratricopeptide repeat. This Pfam entry
includes outlying Tetratricopeptide-like repeats (TPR)
that are not matched by pfam00515.
Length = 34
Score = 34.8 bits (81), Expect = 0.027
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 69 PEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRY 102
E G+ Y GD+E+AL ++ AL+L+P
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
Score = 34.8 bits (81), Expect = 0.030
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 174 RAWYGRALVYQMRGEYEKSIEDFSQAISLY 203
A Y L Y G+YE+++E + +A+ L
Sbjct: 2 EALYNLGLAYYKLGDYEEALEAYEKALELD 31
Score = 32.9 bits (76), Expect = 0.091
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 104 KVYANRALIRYKMGDVPMAIRDYGTALKINPDY 136
+ N L YK+GD A+ Y AL+++P+
Sbjct: 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
Score = 31.3 bits (72), Expect = 0.31
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 208 PDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240
+ G++Y +Y+ ALE ++ A+ LDP
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
Score = 29.8 bits (68), Expect = 1.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 242 ASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRY 275
A +N G+ Y G Y A++ Y+KAL +D
Sbjct: 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34
>gnl|CDD|138914 PRK12370, PRK12370, invasion protein regulator; Provisional.
Length = 553
Score = 33.3 bits (76), Expect = 0.072
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 155 LQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGR 214
+ KA +A +L ++ +A L+ + EY F QA +L S IS D
Sbjct: 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQA-NLLSPISADIKYYY 378
Query: 215 GISYLATKNYDSALEDFKFAINLDPKKAS 243
G + + AL+ + LDP +A+
Sbjct: 379 GWNLFMAGQLEEALQTINECLKLDPTRAA 407
>gnl|CDD|182415 PRK10370, PRK10370, formate-dependent nitrite reductase complex
subunit NrfG; Provisional.
Length = 198
Score = 31.0 bits (70), Expect = 0.36
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 57 SLTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRY 114
+L IRA+P + E + + G Y D++ ALL ++ AL L ++YA A + Y
Sbjct: 61 ALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLY 118
>gnl|CDD|179207 PRK01024, PRK01024, Na(+)-translocating NADH-quinone reductase
subunit B; Provisional.
Length = 503
Score = 29.7 bits (67), Expect = 0.93
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 15 FLRSSKRRGYYSLLS--VLVVSVILLIEGCSSLFP------SMGRRVNIDSLTAVIRAHP 66
FL S + Y+S +S + + S+ L GC P ++G + L A+IR H
Sbjct: 91 FLHISGFKSYFSFVSKEIGIGSI--LWAGCKIFLPLLFISYAVGGTCEV--LFAIIRKH- 145
Query: 67 SDPEGYNVRGVVY 79
EG V G++Y
Sbjct: 146 KIAEGLLVTGILY 158
>gnl|CDD|131842 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF. Members of
this protein family are the product of one of seven
genes regularly clustered in operons to encode the
proteins of the tol-pal system, which is critical for
maintaining the integrity of the bacterial outer
membrane. The gene for this periplasmic protein has been
designated orf2 and ybgF. All members of the seed
alignment were from unique tol-pal gene regions from
completed bacterial genomes. The architecture of this
protein is a signal sequence, a low-complexity region
usually rich in Asn and Gln, a well-conserved region
with tandem repeats that resemble the tetratricopeptide
(TPR) repeat, involved in protein-protein interaction.
Length = 119
Score = 28.8 bits (65), Expect = 1.7
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 135 DYDVAYIGRGNIYRDERYSDLQKAFADFDRAI--QLKTSDGRAWYGRALVYQMRGEYEKS 192
YD A + + Y+D +AF F + + W G A Y +G+Y +
Sbjct: 5 YYDAAL----LVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEA--YYAQGKYADA 58
Query: 193 IEDFSQAISLY--SSISPDYYNGRGISYLATKNYDSA 227
+ F + Y S +PD G+S + + A
Sbjct: 59 AKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKA 95
>gnl|CDD|149655 pfam08670, MEKHLA, MEKHLA domain. The MEKHLA domain shares
similarity with the PAS domain and is found in the 3'
end of plant HD-ZIP III homeobox genes, and bacterial
proteins.
Length = 148
Score = 28.4 bits (64), Expect = 2.1
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 148 RDERYSDLQKA----FADFDRAIQLKTSDGRAWYGRALVYQMRGE 188
R ER S+L K FA +++ + R +A+ +++ E
Sbjct: 87 RKERCSELAKVMQQGFACLYSGVRISSMGRRFSIEQAVAWKLLDE 131
>gnl|CDD|100814 PRK01207, PRK01207, methionine synthase; Provisional.
Length = 343
Score = 28.3 bits (63), Expect = 2.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 251 VYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEV 296
+YE + +Y S D+RYYR + I R+ + S ++EV
Sbjct: 65 MYEHPAERIKGIIFYGMVRSFDNRYYRKGSIIDRMERRSSFHLDEV 110
>gnl|CDD|183823 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 28.1 bits (63), Expect = 3.0
Identities = 11/50 (22%), Positives = 27/50 (54%)
Query: 183 YQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFK 232
++ +Y+ + + +++ S I+ + +N L K YD+ALE+++
Sbjct: 841 NKVANDYKGFKFELIRTLAMESPITEEEFNKLKKDELTDKLYDAALENYQ 890
>gnl|CDD|182884 PRK10987, PRK10987, regulatory protein AmpE; Provisional.
Length = 284
Score = 28.0 bits (63), Expect = 3.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 76 GVVYGMNGDFEKALLD-FQSALDLNPRYYKV 105
G Y + G FEKAL F S LD + Y+V
Sbjct: 205 GFGYALLGHFEKALPAWFASLLDFHTSQYQV 235
>gnl|CDD|179427 PRK02471, PRK02471, bifunctional glutamate--cysteine
ligase/glutathione synthetase; Provisional.
Length = 752
Score = 28.0 bits (63), Expect = 3.5
Identities = 31/144 (21%), Positives = 54/144 (37%), Gaps = 22/144 (15%)
Query: 86 EKALLDFQSALDLNPRYYKVYAN----RALIRYKMGDVPMAIRDYGTALKINPDYDVAYI 141
++ DF++ L Y KV N R L+ Y G P+A D+ K + DV +
Sbjct: 164 QQDYKDFKNDL-----YLKVARNFLRYRWLLTYLFGASPVAEADFFKQNKEYLNQDVRSL 218
Query: 142 GRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQMRGEYEKSIEDFSQAIS 201
R + Y D+ ++ + + S V + EK +F +
Sbjct: 219 -RNSKYGYVNKEDVYVSYNSLEDYV----SSLENA-----VESGQLISEK---EFYSPVR 265
Query: 202 LYSSISPDYYNGRGISYLATKNYD 225
L + +GI+YL + +D
Sbjct: 266 LRGAKQDRSLLEKGITYLEFRLFD 289
>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional.
Length = 391
Score = 27.4 bits (61), Expect = 4.4
Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 73 NVRGVVYGMNGDFEKALLDFQSALDL---NPRYYKVYANRALIRYKMGDVPMAIRDYGTA 129
+VR +V+G DFE L +A + PR + Y + ++ V + R T
Sbjct: 159 HVRRLVFGPERDFEHYLGCKVAACVVDGYRPRDERTYVLYNEVGRQVARVAL--RGDRTL 216
Query: 130 LKINPDYDVAYIGRGNIYRDERYSDLQKAFADF 162
+ + E L+ F D
Sbjct: 217 FLFIFRAEHDNPP---LTPAEEKQLLRDQFGDV 246
>gnl|CDD|165303 PHA03002, PHA03002, Hypothetical protein; Provisional.
Length = 679
Score = 27.0 bits (60), Expect = 5.8
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 98 LNPRYYKVYANRALI-RYKMGDVPMAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQ 156
LN Y V + LI Y + V M +Y T L D D +I Y D R
Sbjct: 249 LNDFLYSVVSKEELIKEYGIKSVAMFSLNYETDLDTLTDDDKIFIEVNISYYDSRCRQFA 308
Query: 157 KAFAD 161
F D
Sbjct: 309 NEFRD 313
>gnl|CDD|115731 pfam07096, DUF1358, Protein of unknown function (DUF1358). This
family consists of several hypothetical eukaryotic
proteins of around 125 residues in length. The function
of this family is unknown.
Length = 123
Score = 26.8 bits (59), Expect = 7.0
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 214 RGISYLATKNYDSALEDFKFAINLDPKKASFWFNGG 249
G ++LAT AL F + K +GG
Sbjct: 28 FGAAFLATVAGAGALAGFSSTLKSAKKYDPKGLHGG 63
>gnl|CDD|129868 TIGR00786, dctM, TRAP transporter, DctM subunit. force-dependent
uptake of dicarboxylates into R. capsulatus.
Length = 405
Score = 26.5 bits (59), Expect = 8.1
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 29 SVLVVSVILLIEGCSSLFPSMGRRVNIDS-LTAVIRAHPSDP 69
S+ S+++LI +++F + I L ++ S P
Sbjct: 255 SLRTTSMVMLIIAGATVFSWLLTHAQIPQRLADLLANAISSP 296
>gnl|CDD|148845 pfam07470, Glyco_hydro_88, Glycosyl Hydrolase Family 88.
Unsaturated glucuronyl hydrolase catalyses the
hydrolytic release of unsaturated glucuronic acids from
oligosaccharides (EC:3.2.1.-) produced by the reactions
of polysaccharide lyases.
Length = 350
Score = 26.6 bits (59), Expect = 8.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 140 YIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRALVYQM 185
+ + +DERY AD+ A +TS+G W+ + YQM
Sbjct: 81 LLDLYELTKDERYRKAALELADWVLATPPRTSEGGFWHKKKYPYQM 126
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.137 0.404
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,013,945
Number of extensions: 327296
Number of successful extensions: 803
Number of sequences better than 10.0: 1
Number of HSP's gapped: 756
Number of HSP's successfully gapped: 92
Length of query: 298
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 205
Effective length of database: 3,984,929
Effective search space: 816910445
Effective search space used: 816910445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)