BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780436|ref|YP_003064849.1| hypothetical protein CLIBASIA_01605 [Candidatus Liberibacter asiaticus str. psy62] (298 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780436|ref|YP_003064849.1| hypothetical protein CLIBASIA_01605 [Candidatus Liberibacter asiaticus str. psy62] Length = 298 Score = 604 bits (1557), Expect = e-175, Method: Compositional matrix adjust. Identities = 298/298 (100%), Positives = 298/298 (100%) Query: 1 MYLPSWISDKFGCGFLRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTA 60 MYLPSWISDKFGCGFLRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTA Sbjct: 1 MYLPSWISDKFGCGFLRSSKRRGYYSLLSVLVVSVILLIEGCSSLFPSMGRRVNIDSLTA 60 Query: 61 VIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP 120 VIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP Sbjct: 61 VIRAHPSDPEGYNVRGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALIRYKMGDVP 120 Query: 121 MAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRA 180 MAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRA Sbjct: 121 MAIRDYGTALKINPDYDVAYIGRGNIYRDERYSDLQKAFADFDRAIQLKTSDGRAWYGRA 180 Query: 181 LVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240 LVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK Sbjct: 181 LVYQMRGEYEKSIEDFSQAISLYSSISPDYYNGRGISYLATKNYDSALEDFKFAINLDPK 240 Query: 241 KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVNE 298 KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVNE Sbjct: 241 KASFWFNGGMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRISQDLSSTVNEVNE 298 >gi|254780592|ref|YP_003065005.1| TPR repeat-containing protein [Candidatus Liberibacter asiaticus str. psy62] Length = 271 Score = 33.9 bits (76), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 56 DSLTAVIRAHPSDPEGYNV---RGVVYGMNGDFEKALLDFQSALDLNPRYYKVYANRALI 112 + L A+ RA D + + +G V G +AL++++ AL+L+P + +N A+ Sbjct: 122 EGLDAINRAQRPDIPDWQLISAKGSVLAQMGKHSEALIEYERALELSPNESSIVSNIAMS 181 Query: 113 RYKMGDVPMA 122 MGD+ A Sbjct: 182 YLLMGDLKTA 191 >gi|254780700|ref|YP_003065113.1| serine protease DO-like protease [Candidatus Liberibacter asiaticus str. psy62] Length = 489 Score = 26.6 bits (57), Expect = 0.56, Method: Compositional matrix adjust. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 58 LTAVIRAHPSDPEGYNVRGVVYGMNGDFEKALLDF 92 +TAV++ P+D G V V+ ++G K+ DF Sbjct: 310 ITAVVKESPADKAGMKVGDVICMLDGRIIKSHQDF 344 >gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62] Length = 750 Score = 23.1 bits (48), Expect = 5.7, Method: Compositional matrix adjust. Identities = 8/17 (47%), Positives = 12/17 (70%) Query: 56 DSLTAVIRAHPSDPEGY 72 D L V+ ++PSDP+ Y Sbjct: 410 DQLRNVLTSNPSDPDSY 426 >gi|255764514|ref|YP_003065586.2| DNA repair protein RecN [Candidatus Liberibacter asiaticus str. psy62] Length = 554 Score = 22.7 bits (47), Expect = 7.3, Method: Compositional matrix adjust. Identities = 15/66 (22%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 228 LEDFKFAINLDPKKASFWFNG--GMVYEMQGSYANAVKYYKKALSVDSRYYRAKNGILRI 285 +E+ FA+ +K S + + +M+ A+ + +K +S++ Y A+ R+ Sbjct: 298 IEERLFALRAMSRKYSVSIDQLPELAKKMEEDLADISEGNEKVVSLERVLYEARQAYDRV 357 Query: 286 SQDLSS 291 +QD+S+ Sbjct: 358 AQDIST 363 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.137 0.404 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 195,070 Number of Sequences: 1233 Number of extensions: 8157 Number of successful extensions: 38 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 14 Number of HSP's gapped (non-prelim): 8 length of query: 298 length of database: 328,796 effective HSP length: 73 effective length of query: 225 effective length of database: 238,787 effective search space: 53727075 effective search space used: 53727075 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)