HHsearch alignment for GI: 254780438 and conserved domain: pfam01207
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=92.67 E-value=0.41 Score=29.15 Aligned_cols=195 Identities=11% Similarity=0.134 Sum_probs=100.3
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCC--HHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHH---CCCEEEE---EE
Q ss_conf 99999997499899982478833488--8999998874000136741588834856899999850---7212897---10
Q gi|254780438|r 28 HIGKIALQSGASGLTVHPRPDQRHIR--YTDLPEIRRLIDEQFPKAELNIEGYPNETFLNLCERY---KPEQITL---VP 99 (261)
Q Consensus 28 ~~a~~~~~~GadgITvH~R~DrRHI~--~~Dv~~l~~~~~~~~~~~elNiEg~p~~e~i~ia~~i---kP~qvtL---VP 99 (261)
T Consensus 12 ~fR~l~~~~g~~~l~~TEmv~a~~l~~~~~~~~~~~~~~~~e~-P~~~Ql~G~dp~~~~~aa~~~~~~g~d~IDlN~GCP 90 (309)
T pfam01207 12 PFRRLVREYGAGDLVVTEMVTAKAQLRPEKQRELMLPELEEPT-PLAVQLGGSDPALLAEAAKLVADLGADIIDINMGCP 90 (309)
T ss_pred HHHHHHHHHCCCCEEEECCEEEHHHHCCCHHHHHHCCCCCCCC-CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9999999979592999798997135438875887420076789-728999369999999999998863999896518999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEE----ECCCCC--CHHHHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf 1655533357822133378899999862026-9638997----254444--14799997406614651121110244435
Q gi|254780438|r 100 DDPHQLTSDHGWDFLQNQALLTKTVARLHNL-GSRISLF----ADGNGN--EHSLQAAKLTGADCIELYTGPYGACYNNP 172 (261)
Q Consensus 100 e~r~elTTegGldv~~~~~~L~~~i~~l~~~-girvSLF----IDpd~~--q~~i~~a~~~Gad~VElhTG~Ya~a~~~~ 172 (261)
T Consensus 91 ~~~v-~~~g~GsaLl~~p~~~~~iv~a~~~~~~~PVtvK~RlG~d~~~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~g~ 169 (309)
T pfam01207 91 AKKV-TRGGAGAALLRDPDLVAQIVKAVVKAVDIPVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHGRTRAQNYEGP 169 (309)
T ss_pred HHHH-CCCCCCEEHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCC
T ss_conf 9998-789977625417789999999999755885467543378876388999999998468887999676324026786
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHH
Q ss_conf 64336668899987665415623520789898779999973699638842599999999
Q gi|254780438|r 173 QQERIFLNKLAITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATAL 231 (261)
Q Consensus 173 ~~~~~el~~i~~aa~~A~~lgL~VnAGHgLn~~Nl~~~i~~Ip~I~EvsIGHaiIseAl 231 (261)
T Consensus 170 a~w~-~i~~~k~----~~~ipvi~N-Gdi~~~~d~~~~l~-~tg~dgvMigRga~~nPw 221 (309)
T pfam01207 170 ADWD-AIKQVKQ----AVSIPVIAN-GDITDAEDAQRCLS-YTGADGVMIGRGALGNPW 221 (309)
T ss_pred CCHH-HHHHHHH----HCCCCEEEE-CCCCCHHHHHHHHH-HHCCCEEEECHHHHHCCH
T ss_conf 5418-9999998----589828980-89488999999986-109999998489774988