HHsearch alignment for GI: 254780438 and conserved domain: pfam01207

>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=92.67  E-value=0.41  Score=29.15  Aligned_cols=195  Identities=11%  Similarity=0.134  Sum_probs=100.3

Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCC--HHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHH---CCCEEEE---EE
Q ss_conf             99999997499899982478833488--8999998874000136741588834856899999850---7212897---10
Q gi|254780438|r   28 HIGKIALQSGASGLTVHPRPDQRHIR--YTDLPEIRRLIDEQFPKAELNIEGYPNETFLNLCERY---KPEQITL---VP   99 (261)
Q Consensus        28 ~~a~~~~~~GadgITvH~R~DrRHI~--~~Dv~~l~~~~~~~~~~~elNiEg~p~~e~i~ia~~i---kP~qvtL---VP   99 (261)
T Consensus        12 ~fR~l~~~~g~~~l~~TEmv~a~~l~~~~~~~~~~~~~~~~e~-P~~~Ql~G~dp~~~~~aa~~~~~~g~d~IDlN~GCP   90 (309)
T pfam01207        12 PFRRLVREYGAGDLVVTEMVTAKAQLRPEKQRELMLPELEEPT-PLAVQLGGSDPALLAEAAKLVADLGADIIDINMGCP   90 (309)
T ss_pred             HHHHHHHHHCCCCEEEECCEEEHHHHCCCHHHHHHCCCCCCCC-CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             9999999979592999798997135438875887420076789-728999369999999999998863999896518999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-CCEEEEE----ECCCCC--CHHHHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf             1655533357822133378899999862026-9638997----254444--14799997406614651121110244435
Q gi|254780438|r  100 DDPHQLTSDHGWDFLQNQALLTKTVARLHNL-GSRISLF----ADGNGN--EHSLQAAKLTGADCIELYTGPYGACYNNP  172 (261)
Q Consensus       100 e~r~elTTegGldv~~~~~~L~~~i~~l~~~-girvSLF----IDpd~~--q~~i~~a~~~Gad~VElhTG~Ya~a~~~~  172 (261)
T Consensus        91 ~~~v-~~~g~GsaLl~~p~~~~~iv~a~~~~~~~PVtvK~RlG~d~~~~~~~~~~~~l~~~G~~~itvH~Rt~~q~~~g~  169 (309)
T pfam01207        91 AKKV-TRGGAGAALLRDPDLVAQIVKAVVKAVDIPVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHGRTRAQNYEGP  169 (309)
T ss_pred             HHHH-CCCCCCEEHHHCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHCCCCC
T ss_conf             9998-789977625417789999999999755885467543378876388999999998468887999676324026786


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEHHHHHHHHH
Q ss_conf             64336668899987665415623520789898779999973699638842599999999
Q gi|254780438|r  173 QQERIFLNKLAITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATAL  231 (261)
Q Consensus       173 ~~~~~el~~i~~aa~~A~~lgL~VnAGHgLn~~Nl~~~i~~Ip~I~EvsIGHaiIseAl  231 (261)
T Consensus       170 a~w~-~i~~~k~----~~~ipvi~N-Gdi~~~~d~~~~l~-~tg~dgvMigRga~~nPw  221 (309)
T pfam01207       170 ADWD-AIKQVKQ----AVSIPVIAN-GDITDAEDAQRCLS-YTGADGVMIGRGALGNPW  221 (309)
T ss_pred             CCHH-HHHHHHH----HCCCCEEEE-CCCCCHHHHHHHHH-HHCCCEEEECHHHHHCCH
T ss_conf             5418-9999998----589828980-89488999999986-109999998489774988