HHsearch alignment for GI: 254780438 and conserved domain: pfam01261
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=93.13 E-value=0.94 Score=26.67 Aligned_cols=150 Identities=17% Similarity=0.214 Sum_probs=86.2
Q ss_pred HHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCC
Q ss_conf 99997499899982478833488899999887400013674158883485689999985072128971016555333578
Q gi|254780438|r 31 KIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLIDEQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHG 110 (261)
Q Consensus 31 ~~~~~~GadgITvH~R~DrRHI~~~Dv~~l~~~~~~~~~~~elNiEg~p~~e~i~ia~~ikP~qvtLVPe~r~elTTegG 110 (261)
T Consensus 2 ~~a~~~G~~~vE~~~~~~~~~~~~~~~~~l~~~~~~------~gl~i~---------------~~~~----------~~~ 50 (201)
T pfam01261 2 ELAAELGFDGVELFFDDPRPASDKLEIEELKALLKE------YGLEIT---------------SLNP----------SLG 50 (201)
T ss_pred HHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH------CCCEEE---------------EEEC----------CCC
T ss_conf 789967999999736887644572589999999997------099799---------------9977----------865
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 22133378899999862026963899725444414799997406614651121110244435643366688999876654
Q gi|254780438|r 111 WDFLQNQALLTKTVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQ 190 (261)
Q Consensus 111 ldv~~~~~~L~~~i~~l~~~girvSLFIDpd~~q~~i~~a~~~Gad~VElhTG~Ya~a~~~~~~~~~el~~i~~aa~~A~ 190 (261)
T Consensus 51 ~~~-~~~~~r~~~~~~~~----------------~~l~~a~~lG~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~a~ 113 (201)
T pfam01261 51 LLE-PDEREREAALEALK----------------RAIELAAALGAKVVVVHPGGALPGEDREEALDRLAESLNELAELAE 113 (201)
T ss_pred CCC-CCHHHHHHHHHHHH----------------HHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 458-89899999999999----------------9999999739958998268878899999999999999999999887
Q ss_pred HCCCE----EEECCCC---CHHHHHHHHHHCCC---CEEEEEHHHHHH
Q ss_conf 15623----5207898---98779999973699---638842599999
Q gi|254780438|r 191 KMDLQ----INAGHDL---TIQNIPNLINAIPY---ISEISVGHAFAA 228 (261)
Q Consensus 191 ~lgL~----VnAGHgL---n~~Nl~~~i~~Ip~---I~EvsIGHaiIs 228 (261)
T Consensus 114 ~~gi~i~iE~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~D~~h~~~~ 161 (201)
T pfam01261 114 EYGVKLALENHPGTGVELGYFEEALRLIEEVDSPNVGLCLDTGHAFAA 161 (201)
T ss_pred HCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHC
T ss_conf 557389999879988678999999999986499865511056899981