RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780438|ref|YP_003064851.1| pyridoxine 5'-phosphate
synthase [Candidatus Liberibacter asiaticus str. psy62]
         (261 letters)



>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel,
           protein-substrate complex, multi-binding states; HET:
           DXP; 1.96A {Escherichia coli} (A:)
          Length = 243

 Score =  266 bits (682), Expect = 2e-72
 Identities = 81/243 (33%), Positives = 129/243 (53%), Gaps = 9/243 (3%)

Query: 6   SVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLID 65
            VN++ +A LRN R   +P+ V    IA Q+GA G+TVH R D+RHI   D+  +R+ + 
Sbjct: 7   GVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTL- 65

Query: 66  EQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVA 125
                  +N+E    E  L +    KP    LVP+   ++T++ G D    +  +     
Sbjct: 66  ----DTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACK 121

Query: 126 RLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAIT 185
           RL + G ++SLF D   +E  ++AA   GA  IE++TG Y     + +Q +  L ++A  
Sbjct: 122 RLADAGIQVSLFID--ADEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQE-LARIAKA 178

Query: 186 AQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCFRRA 245
           A  A  + L++NAGH LT  N+   I AIP + E+++GHA    A+  G+K+AV   +R 
Sbjct: 179 ATFAASLGLKVNAGHGLTYHNVK-AIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRL 237

Query: 246 CGQ 248
             +
Sbjct: 238 MLE 240


>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode,
           ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis,
           transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
           (A:)
          Length = 278

 Score =  265 bits (679), Expect = 4e-72
 Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 9/246 (3%)

Query: 3   TSVSVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRR 62
             + VN++ VA LRN R   +P+ V     A  +GA  +T+H R D+RHI   D+  +R 
Sbjct: 32  IDLGVNIDHVATLRNARGTAYPDPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRP 91

Query: 63  LIDEQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTK 122
            +     K  +N+E       L++    +P    LVP+   +LT++ G D + +   +  
Sbjct: 92  RV-----KTRMNLECAVTPEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRA 146

Query: 123 TVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKL 182
              +L + G R+SLF D   +E  ++AA  TGA  IEL+TG Y   ++  +Q+R    ++
Sbjct: 147 ACKQLADAGVRVSLFID--PDEAQIRAAHETGAPVIELHTGRYADAHDAAEQQRE-FERI 203

Query: 183 AITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCF 242
           A        + L++NAGH L   N+   I A+P I+E+++GHA  A A+  G   AV   
Sbjct: 204 ATGVDAGIALGLKVNAGHGLHYTNVQ-AIAALPGIAELNIGHAIVAHAVFVGWDNAVREM 262

Query: 243 RRACGQ 248
           +     
Sbjct: 263 KAIMVA 268


>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid,
           SBRI, UW, emerald biostructures, ALS collaborative
           crystallography; 2.05A {Ehrlichia chaffeensis}
           (A:143-284)
          Length = 142

 Score = 29.6 bits (66), Expect = 0.44
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 77  GYPNETFLNLCERYKPEQITLVPDDPHQLTSD--HGWDFLQ-NQALLTKTVARLHNLGSR 133
           G        L +  K E I +  D+  Q+     +  D +  +   +++    +  +  +
Sbjct: 50  GSITLAIQRLRKNLKNEYIAIECDNISQVEESLSNNVDMILLDNMSISEIKKAVDIVNGK 109

Query: 134 ISLFADGNGNEHSLQAAKLTGADCI 158
             L   G  N  +++   LTG D I
Sbjct: 110 SVLEVSGCVNIRNVRNIALTGVDYI 134


>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse);
           HET: XYL; 2.20A {Actinoplanes missouriensis} (A:)
          Length = 393

 Score = 29.6 bits (65), Expect = 0.47
 Identities = 10/118 (8%), Positives = 25/118 (21%), Gaps = 9/118 (7%)

Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203
             ++      GA  I  +        ++ Q     +       +   +  L +       
Sbjct: 36  VEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGF---KKALDETGLIVPMVTTNL 92

Query: 204 I----QNIPNLINAIPYISEISVGH--AFAATALECGVKEAVFCFRRACGQHLDNTMR 255
                       +    +   ++           E G K  V    R   ++      
Sbjct: 93  FTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDV 150


>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode
           biostructures, ssgcid, niaid, SBRI, UWPPG,
           glycosyltransferase, transferase, structural genomics;
           2.25A {Burkholderia pseudomallei} (A:122-286)
          Length = 165

 Score = 28.8 bits (64), Expect = 0.84
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 3/85 (3%)

Query: 77  GYPNETFLNLCERYKPEQITLVPDDPHQL--TSDHGWDFLQ-NQALLTKTVARLHNLGSR 133
           G   E             + +  +   QL     HG   +  +   L      +     R
Sbjct: 73  GGVGEALDAAFALNAEVPVQIEVETLDQLRTALAHGARSVLLDNFTLDMMRDAVRVTEGR 132

Query: 134 ISLFADGNGNEHSLQAAKLTGADCI 158
             L   G  N  +++A   TG D I
Sbjct: 133 AVLEVSGGVNFDTVRAIAETGVDRI 157


>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A
           {Streptomyces olivochromogenes} (A:)
          Length = 386

 Score = 28.8 bits (63), Expect = 0.84
 Identities = 10/118 (8%), Positives = 27/118 (22%), Gaps = 9/118 (7%)

Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203
             ++Q     GA  +  +        ++  +    + +     Q      + +       
Sbjct: 36  VETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRF---RQALDATGMTVPMATTNL 92

Query: 204 IQNIP----NLINAIPYISEISVGH--AFAATALECGVKEAVFCFRRACGQHLDNTMR 255
             +              +   ++         A+E G K  V    R   +       
Sbjct: 93  FTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDV 150


>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine
          biosynthesis, structural genomics, NPPSFA; 1.65A
          {Thermus thermophilus HB8} PDB: 2iss_A* (A:)
          Length = 297

 Score = 28.0 bits (61), Expect = 1.1
 Identities = 7/58 (12%), Positives = 15/58 (25%)

Query: 24 PNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLIDEQFPKAELNIEGYPNE 81
                  IA ++GA  +    R          +  +      +   A ++I      
Sbjct: 28 VTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKV 85


>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus
           thermophilus} (A:)
          Length = 387

 Score = 28.0 bits (61), Expect = 1.3
 Identities = 11/118 (9%), Positives = 31/118 (26%), Gaps = 9/118 (7%)

Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203
            + +      GA  + L+          PQ+    + +     +   +  L++       
Sbjct: 36  VYVVHKLAELGAYGVNLHDEDLIPRGTPPQERDQIVRRF---KKALDETGLKVPMVTANL 92

Query: 204 IQNIP----NLINAIPYISEISVGHAFAA--TALECGVKEAVFCFRRACGQHLDNTMR 255
             +         +  P++   ++  +        E G +  V    R   +       
Sbjct: 93  FSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKA 150


>1xp3_A Endonuclease IV; NFO, DNA replication, DNA recombination,
           DNA repair, spine, structural genomics, structural
           proteomics in europe, hydrolase; 2.57A {Bacillus
           anthracis} (A:)
          Length = 307

 Score = 27.7 bits (60), Expect = 1.5
 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 4/99 (4%)

Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203
             + + A   GA    +YTG        P +E      +    +  ++  ++    H   
Sbjct: 26  LAASEEAVSYGATTFMIYTGAPQNTRRKPIEEL----NIEAGRKHMEQNGIEEIIIHAPY 81

Query: 204 IQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCF 242
           I N+ N      +   +             GV + +   
Sbjct: 82  IINVGNTTKPETFQLGVDFLRMEIERTSALGVAKQIVLH 120


>3ktc_A Xylose isomerase; putative sugar isomerase, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
           (A:1-275)
          Length = 275

 Score = 27.6 bits (60), Expect = 1.7
 Identities = 12/134 (8%), Positives = 28/134 (20%), Gaps = 14/134 (10%)

Query: 127 LHNLGSRISLFADGNGN---EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLA 183
             N   R ++   G      +    A ++     ++L          +  ++ +    L 
Sbjct: 17  FANYIDRYAVDGYGPALSTIDQINAAKEVGELSYVDLPYPFTPGVTLSEVKDALKDAGLK 76

Query: 184 ITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAA--TALECGVKEAVFC 241
                       I     L   +     N  P     +      +     E G       
Sbjct: 77  AIG---------ITPEIYLQKWSRGAFTNPDPAARAAAFELXHESAGIVRELGANYVKVW 127

Query: 242 FRRACGQHLDNTMR 255
             +    +      
Sbjct: 128 PGQDGWDYPFQVSH 141


>1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645,
           structural genomics, JCSG, PSI, protein structure
           initiative; 2.50A {Thermotoga maritima} (A:160-272)
          Length = 113

 Score = 27.5 bits (61), Expect = 1.8
 Identities = 8/78 (10%), Positives = 22/78 (28%), Gaps = 7/78 (8%)

Query: 88  ERYKPEQITLVP-DDPHQLTS--DHGWDFLQ----NQALLTKTVARLHNLGSRISLFADG 140
           +         V  ++        + G D +     +   +     R+ ++   + +   G
Sbjct: 29  KIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKDINPNVIVEVSG 88

Query: 141 NGNEHSLQAAKLTGADCI 158
              E ++        D I
Sbjct: 89  GITEENVSLYDFETVDVI 106


>3itv_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer,
           metal-binding protein, TIM barrel; HET: PSJ; 1.60A
           {Pseudomonas stutzeri} PDB: 3itt_A* 3itx_A 2hcv_A*
           2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itl_A*
           3ito_A* (A:51-331)
          Length = 281

 Score = 27.3 bits (59), Expect = 2.1
 Identities = 15/119 (12%), Positives = 30/119 (25%), Gaps = 13/119 (10%)

Query: 127 LHNLGSRISLFADGNGNEHSL----QAAKLTGADCIELYTGPYGACYNNPQQERIFLNKL 182
           +   G+R + F                A +            +        +E       
Sbjct: 9   VGTGGTRFARFPGTGEPRGIFDKLDDCAVIQQLTRATPNVSLHIPWDKADPKEL------ 62

Query: 183 AITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFC 241
                    + L  +A +  T  + P   ++  Y S      A  A A+E  ++     
Sbjct: 63  ---KARGDALGLGFDAMNSNTFSDAPGQAHSYKYGSLSHTNAATRAQAVEHNLECIEIG 118


>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear
           Zn cluster, hydrolase; 1.02A {Escherichia coli} (A:)
          Length = 285

 Score = 27.3 bits (59), Expect = 2.1
 Identities = 13/114 (11%), Positives = 24/114 (21%), Gaps = 7/114 (6%)

Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203
            ++   A    A    L+T         P         +       +K            
Sbjct: 15  ANAAIRAAEIDATAFALFTKNQRQWRAAPLTT----QTIDEFKAACEKYHYTSAQILPHD 70

Query: 204 IQNIPNLINAIPYISEISVGHAF--AATALECGVKEAVFCFRRACGQHLDNTMR 255
              + NL + +    E S            + G+    F       Q  +    
Sbjct: 71  -SYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCL 123


>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein,
          pyridoxal phosphate, structural genomics, NPPSFA; 2.30A
          {Methanocaldococcus jannaschii DSM2661} (A:)
          Length = 330

 Score = 26.8 bits (57), Expect = 2.8
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 6/47 (12%)

Query: 26 LVHIGKIALQSGASGLTVHPR------PDQRHIRYTDLPEIRRLIDE 66
           V   +IA ++GA  +    R            R +D   I  ++D 
Sbjct: 26 NVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDA 72


>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase;
           quinolinate phosphoribosyltransferase, quinolinic acid;
           HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A*
           2b7q_A* (A:117-261)
          Length = 145

 Score = 26.6 bits (58), Expect = 3.7
 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 99  PDDPHQLTS--DHGWDFLQ----NQALLTKTVARLHNLGSRISLFADGNGNEHSLQAAKL 152
            +   +  +  + G D +     +     +  A        + L A GN +  S+ A   
Sbjct: 73  CESFEEAKNAMNAGADIVMCDNLSVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAK 132

Query: 153 TGADCI 158
           +G D I
Sbjct: 133 SGVDAI 138


>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase,
           de novo NAD biosynthesis, PRPP, quinolinic acid; 2.40A
           {Mycobacterium tuberculosis H37RV} (A:130-274)
          Length = 145

 Score = 26.2 bits (57), Expect = 4.8
 Identities = 9/88 (10%), Positives = 20/88 (22%), Gaps = 6/88 (6%)

Query: 77  GYPNETFLNLCERYKPEQITLVPDDP--HQLTSDHGWDFLQ----NQALLTKTVARLHNL 130
           G   +    +          +  D             + +             V R  + 
Sbjct: 50  GSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSR 109

Query: 131 GSRISLFADGNGNEHSLQAAKLTGADCI 158
              + L + G  +  +      TG D +
Sbjct: 110 APTVMLESSGGLSLQTAATYAETGVDYL 137


>2qwu_A Intracellular growth locus, subunit C; structure, IGLC, cell
           invasion; 1.65A {Francisella tularensis subsp} (A:)
          Length = 211

 Score = 25.9 bits (56), Expect = 5.5
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 151 KLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203
           ++T  + I + T P  AC  +    R F++ L I  +   K  + I+ G D+T
Sbjct: 11  QVTSGETIHVRTDP-TACIGSHPNCRXFIDSLTIAGEKLDKNIVAIDGGEDVT 62


>1qap_A Quinolinic acid phosphoribosyltransferase;
           glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A
           {Salmonella typhimurium} (A:143-285)
          Length = 143

 Score = 25.8 bits (56), Expect = 5.7
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 130 LGSRISLFADGNGNEHSLQAAKLTGADCI 158
           +  +  L   GN    +L+    TG D I
Sbjct: 107 VNGQARLEVSGNVTAETLREFAETGVDFI 135


>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate,
           lyase; 1.9A {Thermotoga maritima} (A:)
          Length = 205

 Score = 26.0 bits (56), Expect = 6.0
 Identities = 4/54 (7%), Positives = 15/54 (27%)

Query: 121 TKTVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQ 174
            + V  +      +     G  N  ++      G   + + +       +  ++
Sbjct: 138 PQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVRE 191


>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase,
           structural genomics, NPPSFA; 1.90A {Thermus thermophilus
           HB8} (A:131-273)
          Length = 143

 Score = 25.7 bits (56), Expect = 6.5
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 4/86 (4%)

Query: 77  GYPNETFLNLCERYKPEQITLVP-DDPHQL--TSDHGWDFLQ-NQALLTKTVARLHNLGS 132
           G   E       R        V      +L    + G D +  +   L      +  +G 
Sbjct: 50  GGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEAGADLILLDNFPLEALREAVRRVGG 109

Query: 133 RISLFADGNGNEHSLQAAKLTGADCI 158
           R+ L A GN      +AA   G D +
Sbjct: 110 RVPLEASGNMTLERAKAAAEAGVDYV 135


>2f6s_A Cell filamentation protein, putative; structural genomics,
           PSI, protein structure initiative, midwest center for
           structural genomics; 2.50A {Helicobacter pylori 26695}
           (A:)
          Length = 201

 Score = 25.6 bits (55), Expect = 6.5
 Identities = 7/64 (10%), Positives = 12/64 (18%)

Query: 89  RYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVARLHNLGSRISLFADGNGNEHSLQ 148
           R K                                +   +   +    F +GNG    + 
Sbjct: 72  RDKNIAKGNFRFANCLYLDLILPRIESXPQNNFNQIVEKYVEXNIAHPFLEGNGRATRIW 131

Query: 149 AAKL 152
              L
Sbjct: 132 LDLL 135


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0565    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,964,202
Number of extensions: 84997
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 27
Length of query: 261
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 174
Effective length of database: 2,015,014
Effective search space: 350612436
Effective search space used: 350612436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)