RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780438|ref|YP_003064851.1| pyridoxine 5'-phosphate synthase [Candidatus Liberibacter asiaticus str. psy62] (261 letters) >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} (A:) Length = 243 Score = 266 bits (682), Expect = 2e-72 Identities = 81/243 (33%), Positives = 129/243 (53%), Gaps = 9/243 (3%) Query: 6 SVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLID 65 VN++ +A LRN R +P+ V IA Q+GA G+TVH R D+RHI D+ +R+ + Sbjct: 7 GVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTL- 65 Query: 66 EQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVA 125 +N+E E L + KP LVP+ ++T++ G D + + Sbjct: 66 ----DTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACK 121 Query: 126 RLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAIT 185 RL + G ++SLF D +E ++AA GA IE++TG Y + +Q + L ++A Sbjct: 122 RLADAGIQVSLFID--ADEEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQE-LARIAKA 178 Query: 186 AQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCFRRA 245 A A + L++NAGH LT N+ I AIP + E+++GHA A+ G+K+AV +R Sbjct: 179 ATFAASLGLKVNAGHGLTYHNVK-AIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRL 237 Query: 246 CGQ 248 + Sbjct: 238 MLE 240 >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} (A:) Length = 278 Score = 265 bits (679), Expect = 4e-72 Identities = 76/246 (30%), Positives = 124/246 (50%), Gaps = 9/246 (3%) Query: 3 TSVSVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRR 62 + VN++ VA LRN R +P+ V A +GA +T+H R D+RHI D+ +R Sbjct: 32 IDLGVNIDHVATLRNARGTAYPDPVRAALAAEDAGADAITLHLREDRRHIVDADVRTLRP 91 Query: 63 LIDEQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTK 122 + K +N+E L++ +P LVP+ +LT++ G D + + + Sbjct: 92 RV-----KTRMNLECAVTPEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRA 146 Query: 123 TVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKL 182 +L + G R+SLF D +E ++AA TGA IEL+TG Y ++ +Q+R ++ Sbjct: 147 ACKQLADAGVRVSLFID--PDEAQIRAAHETGAPVIELHTGRYADAHDAAEQQRE-FERI 203 Query: 183 AITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCF 242 A + L++NAGH L N+ I A+P I+E+++GHA A A+ G AV Sbjct: 204 ATGVDAGIALGLKVNAGHGLHYTNVQ-AIAALPGIAELNIGHAIVAHAVFVGWDNAVREM 262 Query: 243 RRACGQ 248 + Sbjct: 263 KAIMVA 268 >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} (A:143-284) Length = 142 Score = 29.6 bits (66), Expect = 0.44 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%) Query: 77 GYPNETFLNLCERYKPEQITLVPDDPHQLTSD--HGWDFLQ-NQALLTKTVARLHNLGSR 133 G L + K E I + D+ Q+ + D + + +++ + + + Sbjct: 50 GSITLAIQRLRKNLKNEYIAIECDNISQVEESLSNNVDMILLDNMSISEIKKAVDIVNGK 109 Query: 134 ISLFADGNGNEHSLQAAKLTGADCI 158 L G N +++ LTG D I Sbjct: 110 SVLEVSGCVNIRNVRNIALTGVDYI 134 >1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} (A:) Length = 393 Score = 29.6 bits (65), Expect = 0.47 Identities = 10/118 (8%), Positives = 25/118 (21%), Gaps = 9/118 (7%) Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203 ++ GA I + ++ Q + + + L + Sbjct: 36 VEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGF---KKALDETGLIVPMVTTNL 92 Query: 204 I----QNIPNLINAIPYISEISVGH--AFAATALECGVKEAVFCFRRACGQHLDNTMR 255 + + ++ E G K V R ++ Sbjct: 93 FTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDV 150 >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} (A:122-286) Length = 165 Score = 28.8 bits (64), Expect = 0.84 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 3/85 (3%) Query: 77 GYPNETFLNLCERYKPEQITLVPDDPHQL--TSDHGWDFLQ-NQALLTKTVARLHNLGSR 133 G E + + + QL HG + + L + R Sbjct: 73 GGVGEALDAAFALNAEVPVQIEVETLDQLRTALAHGARSVLLDNFTLDMMRDAVRVTEGR 132 Query: 134 ISLFADGNGNEHSLQAAKLTGADCI 158 L G N +++A TG D I Sbjct: 133 AVLEVSGGVNFDTVRAIAETGVDRI 157 >1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} (A:) Length = 386 Score = 28.8 bits (63), Expect = 0.84 Identities = 10/118 (8%), Positives = 27/118 (22%), Gaps = 9/118 (7%) Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203 ++Q GA + + ++ + + + Q + + Sbjct: 36 VETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRF---RQALDATGMTVPMATTNL 92 Query: 204 IQNIP----NLINAIPYISEISVGH--AFAATALECGVKEAVFCFRRACGQHLDNTMR 255 + + ++ A+E G K V R + Sbjct: 93 FTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDV 150 >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus HB8} PDB: 2iss_A* (A:) Length = 297 Score = 28.0 bits (61), Expect = 1.1 Identities = 7/58 (12%), Positives = 15/58 (25%) Query: 24 PNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLIDEQFPKAELNIEGYPNE 81 IA ++GA + R + + + A ++I Sbjct: 28 VTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKV 85 >1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} (A:) Length = 387 Score = 28.0 bits (61), Expect = 1.3 Identities = 11/118 (9%), Positives = 31/118 (26%), Gaps = 9/118 (7%) Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203 + + GA + L+ PQ+ + + + + L++ Sbjct: 36 VYVVHKLAELGAYGVNLHDEDLIPRGTPPQERDQIVRRF---KKALDETGLKVPMVTANL 92 Query: 204 IQNIP----NLINAIPYISEISVGHAFAA--TALECGVKEAVFCFRRACGQHLDNTMR 255 + + P++ ++ + E G + V R + Sbjct: 93 FSDPAFKDGAFTSPDPWVRAYALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKA 150 >1xp3_A Endonuclease IV; NFO, DNA replication, DNA recombination, DNA repair, spine, structural genomics, structural proteomics in europe, hydrolase; 2.57A {Bacillus anthracis} (A:) Length = 307 Score = 27.7 bits (60), Expect = 1.5 Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 4/99 (4%) Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203 + + A GA +YTG P +E + + ++ ++ H Sbjct: 26 LAASEEAVSYGATTFMIYTGAPQNTRRKPIEEL----NIEAGRKHMEQNGIEEIIIHAPY 81 Query: 204 IQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCF 242 I N+ N + + GV + + Sbjct: 82 IINVGNTTKPETFQLGVDFLRMEIERTSALGVAKQIVLH 120 >3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043} (A:1-275) Length = 275 Score = 27.6 bits (60), Expect = 1.7 Identities = 12/134 (8%), Positives = 28/134 (20%), Gaps = 14/134 (10%) Query: 127 LHNLGSRISLFADGNGN---EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLA 183 N R ++ G + A ++ ++L + ++ + L Sbjct: 17 FANYIDRYAVDGYGPALSTIDQINAAKEVGELSYVDLPYPFTPGVTLSEVKDALKDAGLK 76 Query: 184 ITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAA--TALECGVKEAVFC 241 I L + N P + + E G Sbjct: 77 AIG---------ITPEIYLQKWSRGAFTNPDPAARAAAFELXHESAGIVRELGANYVKVW 127 Query: 242 FRRACGQHLDNTMR 255 + + Sbjct: 128 PGQDGWDYPFQVSH 141 >1o4u_A Type II quinolic acid phosphoribosyltransferase; TM1645, structural genomics, JCSG, PSI, protein structure initiative; 2.50A {Thermotoga maritima} (A:160-272) Length = 113 Score = 27.5 bits (61), Expect = 1.8 Identities = 8/78 (10%), Positives = 22/78 (28%), Gaps = 7/78 (8%) Query: 88 ERYKPEQITLVP-DDPHQLTS--DHGWDFLQ----NQALLTKTVARLHNLGSRISLFADG 140 + V ++ + G D + + + R+ ++ + + G Sbjct: 29 KIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKDINPNVIVEVSG 88 Query: 141 NGNEHSLQAAKLTGADCI 158 E ++ D I Sbjct: 89 GITEENVSLYDFETVDVI 106 >3itv_A L-rhamnose isomerase; beta/alpha barrel, HOMO-tetramer, metal-binding protein, TIM barrel; HET: PSJ; 1.60A {Pseudomonas stutzeri} PDB: 3itt_A* 3itx_A 2hcv_A* 2i57_A* 2i56_A 3ity_A 3iud_A 3iuh_A 3iui_A 3itl_A* 3ito_A* (A:51-331) Length = 281 Score = 27.3 bits (59), Expect = 2.1 Identities = 15/119 (12%), Positives = 30/119 (25%), Gaps = 13/119 (10%) Query: 127 LHNLGSRISLFADGNGNEHSL----QAAKLTGADCIELYTGPYGACYNNPQQERIFLNKL 182 + G+R + F A + + +E Sbjct: 9 VGTGGTRFARFPGTGEPRGIFDKLDDCAVIQQLTRATPNVSLHIPWDKADPKEL------ 62 Query: 183 AITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFC 241 + L +A + T + P ++ Y S A A A+E ++ Sbjct: 63 ---KARGDALGLGFDAMNSNTFSDAPGQAHSYKYGSLSHTNAATRAQAVEHNLECIEIG 118 >1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} (A:) Length = 285 Score = 27.3 bits (59), Expect = 2.1 Identities = 13/114 (11%), Positives = 24/114 (21%), Gaps = 7/114 (6%) Query: 144 EHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203 ++ A A L+T P + +K Sbjct: 15 ANAAIRAAEIDATAFALFTKNQRQWRAAPLTT----QTIDEFKAACEKYHYTSAQILPHD 70 Query: 204 IQNIPNLINAIPYISEISVGHAF--AATALECGVKEAVFCFRRACGQHLDNTMR 255 + NL + + E S + G+ F Q + Sbjct: 71 -SYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCL 123 >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomics, NPPSFA; 2.30A {Methanocaldococcus jannaschii DSM2661} (A:) Length = 330 Score = 26.8 bits (57), Expect = 2.8 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 6/47 (12%) Query: 26 LVHIGKIALQSGASGLTVHPR------PDQRHIRYTDLPEIRRLIDE 66 V +IA ++GA + R R +D I ++D Sbjct: 26 NVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDA 72 >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* (A:117-261) Length = 145 Score = 26.6 bits (58), Expect = 3.7 Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 6/66 (9%) Query: 99 PDDPHQLTS--DHGWDFLQ----NQALLTKTVARLHNLGSRISLFADGNGNEHSLQAAKL 152 + + + + G D + + + A + L A GN + S+ A Sbjct: 73 CESFEEAKNAMNAGADIVMCDNLSVLETKEIAAYRDAHYPFVLLEASGNISLESINAYAK 132 Query: 153 TGADCI 158 +G D I Sbjct: 133 SGVDAI 138 >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, quinolinic acid; 2.40A {Mycobacterium tuberculosis H37RV} (A:130-274) Length = 145 Score = 26.2 bits (57), Expect = 4.8 Identities = 9/88 (10%), Positives = 20/88 (22%), Gaps = 6/88 (6%) Query: 77 GYPNETFLNLCERYKPEQITLVPDDP--HQLTSDHGWDFLQ----NQALLTKTVARLHNL 130 G + + + D + + V R + Sbjct: 50 GSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSR 109 Query: 131 GSRISLFADGNGNEHSLQAAKLTGADCI 158 + L + G + + TG D + Sbjct: 110 APTVMLESSGGLSLQTAATYAETGVDYL 137 >2qwu_A Intracellular growth locus, subunit C; structure, IGLC, cell invasion; 1.65A {Francisella tularensis subsp} (A:) Length = 211 Score = 25.9 bits (56), Expect = 5.5 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Query: 151 KLTGADCIELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLT 203 ++T + I + T P AC + R F++ L I + K + I+ G D+T Sbjct: 11 QVTSGETIHVRTDP-TACIGSHPNCRXFIDSLTIAGEKLDKNIVAIDGGEDVT 62 >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} (A:143-285) Length = 143 Score = 25.8 bits (56), Expect = 5.7 Identities = 8/29 (27%), Positives = 12/29 (41%) Query: 130 LGSRISLFADGNGNEHSLQAAKLTGADCI 158 + + L GN +L+ TG D I Sbjct: 107 VNGQARLEVSGNVTAETLREFAETGVDFI 135 >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} (A:) Length = 205 Score = 26.0 bits (56), Expect = 6.0 Identities = 4/54 (7%), Positives = 15/54 (27%) Query: 121 TKTVARLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQ 174 + V + + G N ++ G + + + + ++ Sbjct: 138 PQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVRE 191 >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus HB8} (A:131-273) Length = 143 Score = 25.7 bits (56), Expect = 6.5 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 4/86 (4%) Query: 77 GYPNETFLNLCERYKPEQITLVP-DDPHQL--TSDHGWDFLQ-NQALLTKTVARLHNLGS 132 G E R V +L + G D + + L + +G Sbjct: 50 GGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEAGADLILLDNFPLEALREAVRRVGG 109 Query: 133 RISLFADGNGNEHSLQAAKLTGADCI 158 R+ L A GN +AA G D + Sbjct: 110 RVPLEASGNMTLERAKAAAEAGVDYV 135 >2f6s_A Cell filamentation protein, putative; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.50A {Helicobacter pylori 26695} (A:) Length = 201 Score = 25.6 bits (55), Expect = 6.5 Identities = 7/64 (10%), Positives = 12/64 (18%) Query: 89 RYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVARLHNLGSRISLFADGNGNEHSLQ 148 R K + + + F +GNG + Sbjct: 72 RDKNIAKGNFRFANCLYLDLILPRIESXPQNNFNQIVEKYVEXNIAHPFLEGNGRATRIW 131 Query: 149 AAKL 152 L Sbjct: 132 LDLL 135 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.320 0.136 0.412 Gapped Lambda K H 0.267 0.0565 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,964,202 Number of extensions: 84997 Number of successful extensions: 289 Number of sequences better than 10.0: 1 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 27 Length of query: 261 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 174 Effective length of database: 2,015,014 Effective search space: 350612436 Effective search space used: 350612436 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (24.9 bits)