RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780438|ref|YP_003064851.1| pyridoxine 5'-phosphate
synthase [Candidatus Liberibacter asiaticus str. psy62]
(261 letters)
>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia
coli [TaxId: 562]}
Length = 242
Score = 181 bits (460), Expect = 6e-47
Identities = 80/240 (33%), Positives = 126/240 (52%), Gaps = 9/240 (3%)
Query: 6 SVNLNAVAVLRNRRNLPWPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLID 65
VN++ +A LRN R +P+ V IA Q+GA G+TVH R D+RHI D+ +R+ +D
Sbjct: 6 GVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLD 65
Query: 66 EQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVA 125
+ E E L + KP LVP+ ++T++ G D + +
Sbjct: 66 TRMNL-----EMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACK 120
Query: 126 RLHNLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQERIFLNKLAIT 185
RL + G ++SLF + +E ++AA GA IE++TG Y A ++ L ++A
Sbjct: 121 RLADAGIQVSLFI--DADEEQIKAAAEVGAPFIEIHTGCY-ADAKTDAEQAQELARIAKA 177
Query: 186 AQLAQKMDLQINAGHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCFRRA 245
A A + L++NAGH LT N+ I AIP + E+++GHA A+ G+K+AV +R
Sbjct: 178 ATFAASLGLKVNAGHGLTYHNVK-AIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRL 236
>d1sxda_ a.60.1.1 (A:) GABP-alpha subunit {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 91
Score = 29.4 bits (66), Expect = 0.35
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 87 CERYKPEQITL-VPDDPHQLTSDHGWDFLQ 115
E Y+ EQ L +P DP ++D ++
Sbjct: 7 LEGYRKEQERLGIPYDPIHWSTDQVLHWVV 36
>d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977
{Anabaena variabilis [TaxId: 1172]}
Length = 283
Score = 27.2 bits (59), Expect = 1.6
Identities = 14/122 (11%), Positives = 33/122 (27%), Gaps = 11/122 (9%)
Query: 50 RHIRYTDLPEIRRLIDEQFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDH 109
++ ++ ++++ F + + E Y + E ++ +
Sbjct: 5 TKASQENIQQLGNILEQCFVMSFGDSEIY--------VKGIGLENFRVIYREQKVAGGLA 56
Query: 110 GWDFLQNQALLTKTVARLHNLGSRISLFADGNGN---EHSLQAAKLTGADCIELYTGPYG 166
Q +A + +G DG +H+LQ LY
Sbjct: 57 ILPMGQWWGGQRVPMAGIAAVGIAPEYRGDGAAIALIQHTLQEISEQDIPISVLYPATQR 116
Query: 167 AC 168
Sbjct: 117 LY 118
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase
{Plasmodium falciparum [TaxId: 5833]}
Length = 409
Score = 26.8 bits (58), Expect = 1.9
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 87 CERYKPEQITLVPDDPHQLTSDHGWDFLQNQALL-TKTVARLHN-LGSRISLFADGNGNE 144
+ T +D + G + TK + ++N +I + A G G
Sbjct: 294 IDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASG-GIF 352
Query: 145 HSLQAAK--LTGADCIELYTG 163
L A + GA +LY+
Sbjct: 353 SGLDALEKIEAGASVCQLYSC 373
>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis
[TaxId: 1392]}
Length = 297
Score = 26.6 bits (58), Expect = 2.3
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 8/46 (17%)
Query: 129 NLGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQ 174
+GS +S + + + A GA +YTG PQ
Sbjct: 2 KIGSHVS-MSGKKMLLAASEEAVSYGATTFMIYTG-------APQN 39
>d2jv3a_ a.60.1.1 (A:) Ets-1 transcription factor pointed domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 26.3 bits (58), Expect = 2.6
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 88 ERYKPEQITL-VPDDPHQLTSDHGWDFLQ 115
+ EQ L +P DP Q T H D++
Sbjct: 26 SGFTKEQQRLGIPKDPRQWTETHVRDWVM 54
>d2i8da1 d.198.4.1 (A:2-122) Uncharacterized protein LSEI2283
{Lactobacillus casei [TaxId: 1582]}
Length = 121
Score = 26.0 bits (57), Expect = 3.0
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 45 PRPDQRHIRYTDLPEIRRLIDEQFPKAELNI 75
P PD T + + + QFP+ +L
Sbjct: 11 PTPDDL----TRVESLFANMQAQFPQLKLEF 37
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 26.1 bits (56), Expect = 3.3
Identities = 10/105 (9%), Positives = 29/105 (27%), Gaps = 8/105 (7%)
Query: 72 ELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQALLTKTVARLHNLG 131
E +G ++ K + + T+ G + + + V +
Sbjct: 194 EGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARAL 253
Query: 132 SRISLFADGNGNEHSLQAAK---LTGADCIELYTGPYGACYNNPQ 173
+ G S ++ +GA +++ + +
Sbjct: 254 PGFPIL--ATGGIDSAESGLQFLHSGASVLQVCS---AVQNQDFT 293
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 348
Score = 25.8 bits (55), Expect = 3.7
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 78 YPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQAL---LTKTVARLHNLGSRI 134
Y N F +L + LV D + + D + + + RL N S +
Sbjct: 70 YENNLFYDLADENG----ILVWQDFMFACTPYPSDPTFLKRVEAEAVYNIRRLRNHAS-L 124
Query: 135 SLFADGNGNEHSLQAAKLTGADCIELYTGPY 165
+++ N +L+ E+Y G
Sbjct: 125 AMWCGNNEILEALKYWGFEKKFTPEVYQGLM 155
>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III
{Thermus aquaticus [TaxId: 271]}
Length = 275
Score = 25.2 bits (54), Expect = 5.0
Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 5/136 (3%)
Query: 101 DPHQLTSDHGWDFLQNQALLTKTVARLHNLGSRISLFADGNGN--EHSLQAAKLTGADCI 158
D + G + L + + + + G E + + +
Sbjct: 143 DALRAAHREGVAYFLE---LEERERERTGIPTLKVGYNAVFGYYLEVTRPYYERVPKEYR 199
Query: 159 ELYTGPYGACYNNPQQERIFLNKLAITAQLAQKMDLQINAGHDLTIQNIPNLINAIPYIS 218
+ T Y P+ + + A + ++ + + + L A ++
Sbjct: 200 PVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARILA 259
Query: 219 EISVGHAFAATALECG 234
E+ V A A A+ G
Sbjct: 260 ELDVYAALAEVAVRYG 275
>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella
pneumoniae [TaxId: 573]}
Length = 179
Score = 25.2 bits (55), Expect = 6.4
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%)
Query: 39 SGLTVHP--RPDQRHIRYTDLPEIRRLIDEQ---FPKAELNIEGYPNETFLNLCERYKPE 93
S LT+ P T+ EI++ ++ + F + + + + T + Y+
Sbjct: 1 SALTIFSVKDPQNSLWHSTNAEEIQQQLNAKGVRFERWQADRDLGAAPTAETVIAAYQHA 60
>d1jeya1 b.131.1.1 (A:254-534) Ku70 subunit middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 281
Score = 24.9 bits (54), Expect = 7.2
Identities = 17/110 (15%), Positives = 27/110 (24%), Gaps = 19/110 (17%)
Query: 14 VLRNRRNLP----WPNLVHIGKIALQSGASGLTVHPRPDQRHIRYTDLPEIRRLIDEQFP 69
R P + +Q G + P R E EQ
Sbjct: 148 TPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTEKIMATPEQVG 207
Query: 70 KAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTSDHGWDFLQNQAL 119
K + +E L Y+ + +P + L+ AL
Sbjct: 208 KMKAIVE--------KLRFTYRSDSFE----NPVL---QQHFRNLEALAL 242
>d2euia1 d.108.1.1 (A:1-153) Probable acetyltransferase PA4026
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 153
Score = 24.6 bits (52), Expect = 7.8
Identities = 7/70 (10%), Positives = 16/70 (22%), Gaps = 3/70 (4%)
Query: 50 RHIRYTDLPEIRRLIDE--QFPKAELNIEGYPNETFLNLCERYKPEQITLVPDDPHQLTS 107
L + L + +F E + R + + D+ +L
Sbjct: 4 VQATLEHLDLLAPLFVKYREFYGMLSYPESSR-KFLEKRLRRKESVIYLALADEEDRLLG 62
Query: 108 DHGWDFLQNQ 117
+
Sbjct: 63 FCQLYPSFSS 72
>d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId:
562]}
Length = 285
Score = 24.5 bits (52), Expect = 9.3
Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 16/125 (12%)
Query: 130 LGSRISLFADGNGNEHSLQAAKLTGADCIELYTGPYGACYNNPQQ-ERIFLNKLAITA-- 186
+G+ +S G ++ A A L+T N +Q L I
Sbjct: 4 IGAHVSA---AGGLANAAIRAAEIDATAFALFTK-------NQRQWRAAPLTTQTIDEFK 53
Query: 187 QLAQKMDLQINA--GHDLTIQNIPNLINAIPYISEISVGHAFAATALECGVKEAVFCFRR 244
+K HD + N+ + + S + + G+ F
Sbjct: 54 AACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCE-QLGLSLLNFHPGS 112
Query: 245 ACGQH 249
Q
Sbjct: 113 HLMQI 117
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.412
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 956,764
Number of extensions: 43078
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 20
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.5 bits)