HHsearch alignment for GI: 254780439 and conserved domain: COG0458
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=100.00 E-value=0 Score=1022.13 Aligned_cols=393 Identities=73% Similarity=1.156 Sum_probs=387.1
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 76775420505466688899999999879789997487650107845131004337999999999986289889975887
Q gi|254780439|r 13 IGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILPTTGG 92 (1162)
Q Consensus 13 iGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp~~GG 92 (1162)
T Consensus 1 igsg~i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~gg 80 (400)
T COG0458 1 IGSGPIVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGG 80 (400)
T ss_pred CCCCCEEEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCC
T ss_conf 99876066764111436789999998669759997288721247800053026624737889999975376626324687
Q ss_pred CHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02688889988759628828757149989998605889999999987898886200023443333323333333444444
Q gi|254780439|r 93 QTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKT 172 (1162)
Q Consensus 93 qtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1162)
T Consensus 81 qt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~----------------------- 136 (400)
T COG0458 81 QTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIA----------------------- 136 (400)
T ss_pred CCHHHHHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCC-----------------------
T ss_conf 4134688998772645644977994587895564209999999998399988-4123-----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 44333322211111123344444445544489999999998719969994132678664511169999999999899857
Q gi|254780439|r 173 LSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHAS 252 (1162)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s 252 (1162)
T Consensus 137 ------------------------------~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s 186 (400)
T COG0458 137 ------------------------------HSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS 186 (400)
T ss_pred ------------------------------CCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHCCCCC
T ss_conf ------------------------------56777765576369977980685788875168718999999987322447
Q ss_pred CCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99827986644997899999997289988999630000001000010134337322898899999999999998718345
Q gi|254780439|r 253 PTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVES 332 (1162)
Q Consensus 253 ~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~v 332 (1162)
T Consensus 187 ~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~- 265 (400)
T COG0458 187 PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIE- 265 (400)
T ss_pred CCCCCEEEEEECCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC-
T ss_conf 6420012442168569999999837998799986786565664443236521455654378899888777788874114-
Q ss_pred CCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 76468999955898499985044431035788876346147677764134461013577567777666577677689854
Q gi|254780439|r 333 GGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKI 412 (1162)
Q Consensus 333 G~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~~~~~~~~a~~Ep~ldyv~vK~ 412 (1162)
T Consensus 266 G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaakla~g~~l~Ei~n~it~-~t~a~fePsldyvv~k~ 344 (400)
T COG0458 266 GGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEIRNDITG-RTPASFEPSLDYVVTKI 344 (400)
T ss_pred CCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCC-CCCCCCCCCCCEEEEEC
T ss_conf 78731489869985599999568767640315544687699999975035670654476644-43444577666036634
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 4201211477666667731001002222676899999899750378767
Q gi|254780439|r 413 PRFTFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTG 461 (1162)
Q Consensus 413 p~f~f~kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KAlrsle~~~~g 461 (1162)
T Consensus 345 pr~~f~kf~~~~~~l~~~mks~gevm~igr~f~eal~ka~~~l~~~~~~ 393 (400)
T COG0458 345 PRFDFEKFPGADRRLGTQMKSVGEVMAIGRTFEEALQKALRSLEIGLAG 393 (400)
T ss_pred CCCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCC
T ss_conf 7787321345563310023001028996312999999999861146651