HHsearch alignment for GI: 254780439 and conserved domain: COG0458

>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=100.00  E-value=0  Score=1022.13  Aligned_cols=393  Identities=73%  Similarity=1.156  Sum_probs=387.1

Q ss_pred             ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEECCCC
Q ss_conf             76775420505466688899999999879789997487650107845131004337999999999986289889975887
Q gi|254780439|r   13 IGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAILPTTGG   92 (1162)
Q Consensus        13 iGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp~~GG   92 (1162)
T Consensus         1 igsg~i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~gg   80 (400)
T COG0458           1 IGSGPIVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGG   80 (400)
T ss_pred             CCCCCEEEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCC
T ss_conf             99876066764111436789999998669759997288721247800053026624737889999975376626324687


Q ss_pred             CHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             02688889988759628828757149989998605889999999987898886200023443333323333333444444
Q gi|254780439|r   93 QTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKT  172 (1162)
Q Consensus        93 qtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (1162)
T Consensus        81 qt~Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~-----------------------  136 (400)
T COG0458          81 QTALNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIA-----------------------  136 (400)
T ss_pred             CCHHHHHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCC-----------------------
T ss_conf             4134688998772645644977994587895564209999999998399988-4123-----------------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf             44333322211111123344444445544489999999998719969994132678664511169999999999899857
Q gi|254780439|r  173 LSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHAS  252 (1162)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s  252 (1162)
T Consensus       137 ------------------------------~~~~e~~~~~~~ig~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s  186 (400)
T COG0458         137 ------------------------------HSVEEADEIADEIGYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS  186 (400)
T ss_pred             ------------------------------CCHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHCCCCC
T ss_conf             ------------------------------56777765576369977980685788875168718999999987322447


Q ss_pred             CCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             99827986644997899999997289988999630000001000010134337322898899999999999998718345
Q gi|254780439|r  253 PTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVES  332 (1162)
Q Consensus       253 ~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~v  332 (1162)
T Consensus       187 ~~~~vl~eesi~G~ke~e~ev~rd~~~n~ivvc~men~dp~gvhtgdsi~vapaqtl~d~eyq~~r~~~~~iir~igi~-  265 (400)
T COG0458         187 PVEEVLIEESIIGWKEFEYEVVRDGKDNCIVVCNMENLDPMGVHTGDSITVAPAQTLTDKEYQMLRDAAIKVIREIGIE-  265 (400)
T ss_pred             CCCCCEEEEEECCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCC-
T ss_conf             6420012442168569999999837998799986786565664443236521455654378899888777788874114-


Q ss_pred             CCCEEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             76468999955898499985044431035788876346147677764134461013577567777666577677689854
Q gi|254780439|r  333 GGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKI  412 (1162)
Q Consensus       333 G~~nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~~~~~~~~a~~Ep~ldyv~vK~  412 (1162)
T Consensus       266 G~~niQ~av~~~~~~~~viEvNpRvSrssaLaskAtgypia~vaakla~g~~l~Ei~n~it~-~t~a~fePsldyvv~k~  344 (400)
T COG0458         266 GGCNIQFAVDPGGGELYVIEINPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEIRNDITG-RTPASFEPSLDYVVTKI  344 (400)
T ss_pred             CCCCEEEEECCCCCEEEEEEECCCCCCCCHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCC-CCCCCCCCCCCEEEEEC
T ss_conf             78731489869985599999568767640315544687699999975035670654476644-43444577666036634


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCCC
Q ss_conf             4201211477666667731001002222676899999899750378767
Q gi|254780439|r  413 PRFTFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTG  461 (1162)
Q Consensus       413 p~f~f~kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KAlrsle~~~~g  461 (1162)
T Consensus       345 pr~~f~kf~~~~~~l~~~mks~gevm~igr~f~eal~ka~~~l~~~~~~  393 (400)
T COG0458         345 PRFDFEKFPGADRRLGTQMKSVGEVMAIGRTFEEALQKALRSLEIGLAG  393 (400)
T ss_pred             CCCCCCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCC
T ss_conf             7787321345563310023001028996312999999999861146651