HHsearch alignment for GI: 254780439 and conserved domain: COG1181
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane].
Probab=99.65 E-value=1e-13 Score=126.32 Aligned_cols=282 Identities=20% Similarity=0.314 Sum_probs=206.4
Q ss_pred CHHHHHH---HHHHHHHHHHHCCCEEEEECCCCCEEE-CCCCCCCCEEECCCCHHHHHHHHHHHCCCEEEECCCCCHHHH
Q ss_conf 0546668---889999999987978999748765010-784513100433799999999998628988997588702688
Q gi|254780439|r 22 QACEFDY---SGTQACKALKEEGYRIILVNSNPATIM-TDPDLADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALN 97 (1162)
Q Consensus 22 qa~EfDy---s~~qa~~alke~Gi~vVlVNsNpaTi~-TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaIlp~~GGqtaln 97 (1162)
T Consensus 12 ~s~e~eVsl~sa~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~vvfp~lhG~~gE- 75 (317)
T COG1181 12 RSAEREVSLLSAKAVLRALKGFGYDVTPVDITEAGLWMLDKEVTK---------------RVLQKADVVFPVLHGPYGE- 75 (317)
T ss_pred CCCCEEEEEECHHHHHHHHHCCCCEEEEEECCCCCEEEECCCHHH---------------HHHCCCCEEEEECCCCCCC-
T ss_conf 537306999658999998761487158873246632785031012---------------2202698778715588888-
Q ss_pred HHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88998875962882875714998999860588999999998789888620002344333332333333344444444333
Q gi|254780439|r 98 TALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEE 177 (1162)
Q Consensus 98 l~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1162)
T Consensus 76 ---Dg~iqg~le~~giPyvg~gv~~Sa~~mdk~~~K~~~~~~g~~~a~~~~~~~~~------------------------ 128 (317)
T COG1181 76 ---DGTIQGLLELLGIPYVGKGVLASAGAMDKIVTKRLFKAEGLPVAPYVALTRDE------------------------ 128 (317)
T ss_pred ---CCHHHHHHHHHCCCEEECCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCC------------------------
T ss_conf ---70699999970998760764453323509999889986786512356753345------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 32221111112334444444554448999999999871996999413267866451116999999999989985799827
Q gi|254780439|r 178 LDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEV 257 (1162)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~v 257 (1162)
T Consensus 129 ---------------------~----~~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a~~~d--~~v 181 (317)
T COG1181 129 ---------------------Y----SSVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELAFKYD--RDV 181 (317)
T ss_pred ---------------------C----HHHHHHHHHCCCCCCEEEECCCCEEEEEEEECCEECCHHHHHHHHHHHC--CCC
T ss_conf ---------------------2----0478887741468878998587311367998835043699999999847--851
Q ss_pred EEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCC----------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9866449978999999972899889996300000010----------000101343373228988999999999999987
Q gi|254780439|r 258 LIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMG----------VHTGDSITVAPALTLTDKEYQLMRNAAIAVLKE 327 (1162)
Q Consensus 258 lIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~G----------iHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~ 327 (1162)
T Consensus 182 l~e~~~~-~rei~v~vl~~~~-~~~~l-~~~eI~~~~~~fydye~Ky~~~gg~~~~~pa-~lt~~~~~~i~~lA~~a~~a 257 (317)
T COG1181 182 LREQGIT-GREIEVGVLGNDY-EEQAL-PLGEIPPKGEEFYDYEAKYLSTGGAQYDIPA-GLTDEIHEEIKELALRAYKA 257 (317)
T ss_pred EECCCCC-CCEEEEEECCCCC-CCEEC-CCCEEECCCCEEEEEECCCCCCCCCEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_conf 2003776-6558986358865-52444-7616816998698600014578984353788-99988999999999999986
Q ss_pred HCCCCCCCEEEEEEECCCCEEEEEEECCCCC--HHH--HHHHHHHCCCHHHHHHH
Q ss_conf 1834576468999955898499985044431--035--78887634614767776
Q gi|254780439|r 328 IGVESGGANVQFAVNPKNGKMVVIEMNPRVS--RSS--ALASKATGFPIAKIAAK 378 (1162)
Q Consensus 328 lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~s--Rss--alaskatgypia~vaak 378 (1162)
T Consensus 258 lg~~-g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~~~~~gi~~~~L~~~ 311 (317)
T COG1181 258 LGCL-GLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKAAAAAGISFAILVLR 311 (317)
T ss_pred CCCC-CEEEEEEEEECCCCCEEEEEEECCCCCCCCCCCHHHHHHCCCCHHHHHHH
T ss_conf 0888-75888799987899899998708998765353767798759988999999