HHsearch alignment for GI: 254780439 and conserved domain: PRK01372

>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed.
Probab=99.94  E-value=3.7e-23  Score=201.15  Aligned_cols=284  Identities=21%  Similarity=0.302  Sum_probs=222.6

Q ss_pred             CCEEEEECCCCCCCCCHHHHHH---HHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCC
Q ss_conf             5699997677542050546668---8899999999879789997487650107845131004337999999999986289
Q gi|254780439|r    7 LKTLLIIGAGPIVIGQACEFDY---SGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERP   83 (1162)
Q Consensus         7 ikkvLviGsGpi~IGqa~EfDy---s~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~p   83 (1162)
T Consensus         4 ~~kI~vl~GG~S-----~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~---------------------~~~~~l~~~~~   57 (304)
T PRK01372          4 FGKVAVLMGGTS-----AEREVSLNSGAAVLAALREAGYDAHPIDPGE---------------------DPAAELKELGF   57 (304)
T ss_pred             CCCEEEEECCCC-----HHHHHHHHHHHHHHHHHHHCCCEEEEECCCC---------------------CHHHHHHHCCC
T ss_conf             771899936787-----1289999999999998837599799982896---------------------46778753399


Q ss_pred             CEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             88997588702688889988759628828757149989998605889999999987898886200023443333323333
Q gi|254780439|r   84 DAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHE  163 (1162)
Q Consensus        84 DaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~  163 (1162)
T Consensus        58 D~vf~~lHG~~GEDG~i----QglLe~~~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~-------------  120 (304)
T PRK01372         58 DRVFNALHGRGGEDGTI----QGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLT-------------  120 (304)
T ss_pred             CEEEEECCCCCCCCHHH----HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC-------------
T ss_conf             99999068999856499----9999985998357998998776538999999998699989849986-------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf             33344444444333322211111123344444445544489999999998719969994132678664511169999999
Q gi|254780439|r  164 EERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLE  243 (1162)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~  243 (1162)
T Consensus       121 ----------------------------------------~~~~~~~~~~~l~~P~iVKP~~~GSSiGv~~V~~~~el~~  160 (304)
T PRK01372        121 ----------------------------------------RAEDLLAAIDKLGLPLVVKPAREGSSVGVTKVKEADELPA  160 (304)
T ss_pred             ----------------------------------------CCHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCHHHHHH
T ss_conf             ----------------------------------------5313999987618987997668886665389669889999


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEE-EECCCCC-CCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             99989985799827986644997899999997289988999-6300000-010000101343373228988999999999
Q gi|254780439|r  244 IVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVV-CSIENLD-PMGVHTGDSITVAPALTLTDKEYQLMRNAA  321 (1162)
Q Consensus       244 ~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v-~~~En~d-p~GiHtGDSi~vaP~qTL~d~~~q~LR~~a  321 (1162)
T Consensus       161 ai~~a~~~~--~~vLvE~~I~G-rEitv~Vlg~~~lp~~eI~~~~~fyDy~aKY~~~~s~~~~Pa~-l~~~~~~~i~~~a  236 (304)
T PRK01372        161 ALELAFKYD--DEVLVEKYIKG-RELTVAVLGGKALPVIRIVPPGEFYDYEAKYLAGDTQYLCPAG-LPAELEAELQALA  236 (304)
T ss_pred             HHHHHHHCC--CCCEEEEEECC-EEEEEEEECCCCCCEEEEECCCCCCCHHHCCCCCCCCEECCCC-CCHHHHHHHHHHH
T ss_conf             999987448--86254502565-6999999899777538994599875776612557741100689-9999999999999


Q ss_pred             HHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECC--CCCHHHHH--HHHHHCCCHHHHHHHH
Q ss_conf             9999871834576468999955898499985044--43103578--8876346147677764
Q gi|254780439|r  322 IAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNP--RVSRSSAL--ASKATGFPIAKIAAKL  379 (1162)
Q Consensus       322 ~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNp--R~sRssal--askatgypia~vaakl  379 (1162)
T Consensus       237 ~~~~~aLg~~-g~aRvDf~~~-~~g~~~~lEiNt~PGmT~~Sl~P~~a~~~G~s~~~li~~i  296 (304)
T PRK01372        237 LRAYKALGCR-GWGRVDFMLD-EDGKPYLLEVNTSPGMTSHSLVPMAARAAGISFSELVVWI  296 (304)
T ss_pred             HHHHHHHCCC-CEEEEEEEEE-CCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf             9999984997-3698899990-7997899983399998741589999998199999999999