HHsearch alignment for GI: 254780439 and conserved domain: PRK01372
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed.
Probab=99.94 E-value=3.7e-23 Score=201.15 Aligned_cols=284 Identities=21% Similarity=0.302 Sum_probs=222.6
Q ss_pred CCEEEEECCCCCCCCCHHHHHH---HHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCC
Q ss_conf 5699997677542050546668---8899999999879789997487650107845131004337999999999986289
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDY---SGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERP 83 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDy---s~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~p 83 (1162)
T Consensus 4 ~~kI~vl~GG~S-----~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~---------------------~~~~~l~~~~~ 57 (304)
T PRK01372 4 FGKVAVLMGGTS-----AEREVSLNSGAAVLAALREAGYDAHPIDPGE---------------------DPAAELKELGF 57 (304)
T ss_pred CCCEEEEECCCC-----HHHHHHHHHHHHHHHHHHHCCCEEEEECCCC---------------------CHHHHHHHCCC
T ss_conf 771899936787-----1289999999999998837599799982896---------------------46778753399
Q ss_pred CEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88997588702688889988759628828757149989998605889999999987898886200023443333323333
Q gi|254780439|r 84 DAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHE 163 (1162)
Q Consensus 84 DaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~ 163 (1162)
T Consensus 58 D~vf~~lHG~~GEDG~i----QglLe~~~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~------------- 120 (304)
T PRK01372 58 DRVFNALHGRGGEDGTI----QGLLELLGIPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLT------------- 120 (304)
T ss_pred CEEEEECCCCCCCCHHH----HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC-------------
T ss_conf 99999068999856499----9999985998357998998776538999999998699989849986-------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHH
Q ss_conf 33344444444333322211111123344444445544489999999998719969994132678664511169999999
Q gi|254780439|r 164 EERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLE 243 (1162)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~G~~iv~n~eeL~~ 243 (1162)
T Consensus 121 ----------------------------------------~~~~~~~~~~~l~~P~iVKP~~~GSSiGv~~V~~~~el~~ 160 (304)
T PRK01372 121 ----------------------------------------RAEDLLAAIDKLGLPLVVKPAREGSSVGVTKVKEADELPA 160 (304)
T ss_pred ----------------------------------------CCHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCHHHHHH
T ss_conf ----------------------------------------5313999987618987997668886665389669889999
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEE-EECCCCC-CCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 99989985799827986644997899999997289988999-6300000-010000101343373228988999999999
Q gi|254780439|r 244 IVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVV-CSIENLD-PMGVHTGDSITVAPALTLTDKEYQLMRNAA 321 (1162)
Q Consensus 244 ~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v-~~~En~d-p~GiHtGDSi~vaP~qTL~d~~~q~LR~~a 321 (1162)
T Consensus 161 ai~~a~~~~--~~vLvE~~I~G-rEitv~Vlg~~~lp~~eI~~~~~fyDy~aKY~~~~s~~~~Pa~-l~~~~~~~i~~~a 236 (304)
T PRK01372 161 ALELAFKYD--DEVLVEKYIKG-RELTVAVLGGKALPVIRIVPPGEFYDYEAKYLAGDTQYLCPAG-LPAELEAELQALA 236 (304)
T ss_pred HHHHHHHCC--CCCEEEEEECC-EEEEEEEECCCCCCEEEEECCCCCCCHHHCCCCCCCCEECCCC-CCHHHHHHHHHHH
T ss_conf 999987448--86254502565-6999999899777538994599875776612557741100689-9999999999999
Q ss_pred HHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECC--CCCHHHHH--HHHHHCCCHHHHHHHH
Q ss_conf 9999871834576468999955898499985044--43103578--8876346147677764
Q gi|254780439|r 322 IAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNP--RVSRSSAL--ASKATGFPIAKIAAKL 379 (1162)
Q Consensus 322 ~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNp--R~sRssal--askatgypia~vaakl 379 (1162)
T Consensus 237 ~~~~~aLg~~-g~aRvDf~~~-~~g~~~~lEiNt~PGmT~~Sl~P~~a~~~G~s~~~li~~i 296 (304)
T PRK01372 237 LRAYKALGCR-GWGRVDFMLD-EDGKPYLLEVNTSPGMTSHSLVPMAARAAGISFSELVVWI 296 (304)
T ss_pred HHHHHHHCCC-CEEEEEEEEE-CCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHH
T ss_conf 9999984997-3698899990-7997899983399998741589999998199999999999