HHsearch alignment for GI: 254780439 and conserved domain: PRK01438
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=93.32 E-value=0.61 Score=25.23 Aligned_cols=133 Identities=15% Similarity=0.127 Sum_probs=75.0
Q ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCC-----CCCCCEEECCCCHHHHHHHHHHHC
Q ss_conf 699997677542050546668889999999987978999748765010784-----513100433799999999998628
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDP-----DLADATYTEPITPEVVAKIIEKER 82 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~-----~~aD~vY~ePlt~e~v~~Ii~~E~ 82 (1162)
T Consensus 15 k~v~V~GlG~s-----------G~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~-~-----~~~ 77 (481)
T PRK01438 15 LRVVVAGLGVS-----------GFPAADALHELGASVTVVADGDDDRSRERAALLEVLGATVRLGDGETT-L-----PEG 77 (481)
T ss_pred CEEEEEEECHH-----------HHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHH-H-----HCC
T ss_conf 98999957588-----------999999999679989999799874486899988854988996887566-6-----248
Q ss_pred CCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98899758870268888998875962882875714998999860588999999998789888620002344333332333
Q gi|254780439|r 83 PDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLH 162 (1162)
Q Consensus 83 pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~ 162 (1162)
T Consensus 78 ~d~vV~SPGI~~~~p~~~~a~------~~gi~i~~----------eiel~~~~~~~~~~~~~------------------ 123 (481)
T PRK01438 78 TELVVTSPGWRPTHPLLAAAA------EAGIPVWG----------DVELAWRLRDPDGTPAP------------------ 123 (481)
T ss_pred CCEEEECCCCCCCCHHHHHHH------HCCCCEEC----------HHHHHHHHHHCCCCCCC------------------
T ss_conf 999998997899899999999------86993861----------89999987521368887------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE
Q ss_conf 3333444444443333222111111233444444455444899999999987199699
Q gi|254780439|r 163 EEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLI 220 (1162)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvi 220 (1162)
T Consensus 124 -----------------------------~IaVTGTnGKTTTtsli~~iL~~~g~~~~ 152 (481)
T PRK01438 124 -----------------------------WLAVTGTNGKTTTVQMLASILRAAGLRAA 152 (481)
T ss_pred -----------------------------EEEEECCCCCHHHHHHHHHHHHHCCCCEE
T ss_conf -----------------------------89993899746099999999996699707