HHsearch alignment for GI: 254780439 and conserved domain: PRK01966
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed.
Probab=99.90 E-value=9.3e-20 Score=174.24 Aligned_cols=306 Identities=17% Similarity=0.259 Sum_probs=217.7
Q ss_pred CEEEEECCCCCCCCCHHHHHH---HHHHHHHHHHHCCCEEEEECCCCCE--EEC--CCCC---CCCEEECC--CC-----
Q ss_conf 699997677542050546668---8899999999879789997487650--107--8451---31004337--99-----
Q gi|254780439|r 8 KTLLIIGAGPIVIGQACEFDY---SGTQACKALKEEGYRIILVNSNPAT--IMT--DPDL---ADATYTEP--IT----- 70 (1162)
Q Consensus 8 kkvLviGsGpi~IGqa~EfDy---s~~qa~~alke~Gi~vVlVNsNpaT--i~T--D~~~---aD~vY~eP--lt----- 70 (1162)
T Consensus 4 ~kI~Vl~GG~S-----~EreVSl~Sg~~v~~~L~~~~y~v~~i~i~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (344)
T PRK01966 4 IRVALLFGGRS-----AEHEVSLVSAKNILKALDKDKFEVIPIGIDKDGRWYLIDGSNMELNSDDPLRIEEKKSAELLLA 78 (344)
T ss_pred CEEEEEECCCC-----CCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCEEECCCCHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 68999958788-----2189999999999997615088599999837988772564111102454210123444322234
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999862898899758870268888998875962882875714998999860588999999998789888620002
Q gi|254780439|r 71 PEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLATPKSILAN 150 (1162)
Q Consensus 71 ~e~v~~Ii~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gip~~~s~~~~ 150 (1162)
T Consensus 79 ~~~~~~~~~~~~~D~vf~alHG~~GEDG~i----QglLe~l~IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~ 154 (344)
T PRK01966 79 LPGFYEGQLIIEVDVVFPVLHGPPGEDGTI----QGLLELLNIPYVGCGVLASAVSMDKILTKRLLAAAGIPQAPYVVLT 154 (344)
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCHHH----HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 553221000356789999068999767099----9999975999368848999987669999999998799989839981
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 34433333233333334444444433332221111112334444444554448999999999871996999413267866
Q gi|254780439|r 151 ATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGT 230 (1162)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~iGyPvivRps~~lGG~ 230 (1162)
T Consensus 155 ~~~--------------------------------------------------~~~~~~~~~~~l~~P~iVKP~~~GSSi 184 (344)
T PRK01966 155 RSR--------------------------------------------------REEAIAEVEEKLGLPVFVKPANLGSSV 184 (344)
T ss_pred CCC--------------------------------------------------CHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 666--------------------------------------------------234589999861898799328996343
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCC--------CCCCEEEE
Q ss_conf 4511169999999999899857998279866449978999999972899889996300000010--------00010134
Q gi|254780439|r 231 GGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMG--------VHTGDSIT 302 (1162)
Q Consensus 231 G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~G--------iHtGDSi~ 302 (1162)
T Consensus 185 Gvs~v~~~~el~~ai~~a~~~~--~~vlvEefI~G-rE~tv~vl~~-~~~~~~l~~~Ei~~~~~fydy~~KY~~~~~~~~ 260 (344)
T PRK01966 185 GISKVKNEEELEAALDLAFEYD--RKVLVEQGIKG-REIECAVLGY-NDEPVASVPGEIVKDNDFYDYEAKYIDDSGATL 260 (344)
T ss_pred CEEEECCHHHHHHHHHHHHHCC--CCCEEECCCCC-EEEEEEEECC-CCCEEEECCEEECCCCCCCCHHHCCCCCCCCEE
T ss_conf 2599689999999999998639--75057512444-8999999748-994677311587179875148881046897169
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECC--CCCHHHHH--HHHHHCCCHHHHHHH
Q ss_conf 33732289889999999999999871834576468999955898499985044--43103578--887634614767776
Q gi|254780439|r 303 VAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNP--RVSRSSAL--ASKATGFPIAKIAAK 378 (1162)
Q Consensus 303 vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNp--R~sRssal--askatgypia~vaak 378 (1162)
T Consensus 261 ~~Pa-~l~~~~~~~i~~~a~~~~~~lg~r-g~~RiDf~~d-~~g~~y~lEvNt~PGmT~~Sl~p~~a~~~G~s~~~li~~ 337 (344)
T PRK01966 261 VIPA-DLSEELTEQIRELAIKAFKALGCS-GLARVDFFLT-EDGEIYLNEINTLPGFTPISMYPKLWEASGLSYPELIDR 337 (344)
T ss_pred ECCC-CCCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEEEE-CCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHH
T ss_conf 6678-899999999999999999981997-2798989990-899889998208999875478999999809999999999
Q ss_pred H
Q ss_conf 4
Q gi|254780439|r 379 L 379 (1162)
Q Consensus 379 l 379 (1162)
T Consensus 338 i 338 (344)
T PRK01966 338 L 338 (344)
T ss_pred H
T ss_conf 9