HHsearch alignment for GI: 254780439 and conserved domain: PRK05294
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed.
Probab=100.00 E-value=0 Score=1013.16 Aligned_cols=389 Identities=35% Similarity=0.595 Sum_probs=358.7
Q ss_pred CCCCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCC
Q ss_conf 77741899727630201476653189999999996598069960686521123245863798416788999999874856
Q gi|254780439|r 616 SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQK 695 (1162)
Q Consensus 616 ~~~kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEplt~E~V~~I~~~E~p~ 695 (1162)
T Consensus 5 ~~ikkvLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~NpaTv~Td~~~ad~vY~ePlt~e~v~~Ii~~E~Pd 84 (1063)
T PRK05294 5 TDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEFVEKIIEKERPD 84 (1063)
T ss_pred CCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCC
T ss_conf 78788999898825103723326569999999998699899987985441078776643787279899999999975999
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC------CEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 78227998445124668988888759------838612752033102867899988870986685421121566555655
Q gi|254780439|r 696 GELVGIIVQFGGQTPLKLSKILEKNQ------IPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIAC 769 (1162)
Q Consensus 696 g~~~~vi~q~gGqt~~~la~~L~~~g------v~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~ 769 (1162)
T Consensus 85 ~----il~~~GGQtaLnla~~L~~~GiL~~~~v~lLGt~~~~I~~aedR~~F~~~l~~i~~p~~~s~~~~s~~ea~~~a~ 160 (1063)
T PRK05294 85 A----ILPTMGGQTALNLALELAESGVLEKYGVELIGAKLEAIDKAEDRELFKEAMKKIGLPVPRSGIAHTMEEALEVAE 160 (1063)
T ss_pred E----EEECCCCHHHHHHHHHHHHCCCHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHH
T ss_conf 7----886677805999999999759677649727569999999777899999999976999997253099999999998
Q ss_pred HCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 36971675134444565412554899999999975210132211112233333333455777745670220120100101
Q gi|254780439|r 770 EIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVD 849 (1162)
Q Consensus 770 ~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVD 849 (1162)
T Consensus 161 ~igyPvivRps~~LGG~g~~i~~n~~eL~~~~~~~~~---------------------~S~~~qvLie~sl~gwkEie~e 219 (1063)
T PRK05294 161 EIGYPVIIRPSFTLGGTGGGIAYNREELEEIVERGLD---------------------LSPTTEVLIEESLLGWKEYEME 219 (1063)
T ss_pred HCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHH---------------------HCCCCCEEEEHHCCCCEEEEEE
T ss_conf 6599889984421678764043499999999999996---------------------1999868966111798899999
Q ss_pred EEEECC-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC-CCCEEEEEE--CCCEEEEEE
Q ss_conf 023079-8499985201102152457627981686689999999999999998741335-762478851--288599985
Q gi|254780439|r 850 ALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVI-GLINVQYAI--KDGKIYILE 925 (1162)
Q Consensus 850 ai~Dg~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~-G~~NIQfa~--kd~~iYVIE 925 (1162)
T Consensus 220 v~rD~~~n~i~v~~mEnidp~GIHtGDSi~vaP~qTL~d~e~q~lR~~a~kI~~~L~iv~G~~NiQfA~~p~~~~~~VIE 299 (1063)
T PRK05294 220 VMRDKADNCIIVCSIENIDPMGVHTGDSITVAPAQTLTDKEYQMLRDASIAILREIGVETGGSNVQFAVNPKDGRYVVIE 299 (1063)
T ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEEEE
T ss_conf 99818999899954113545645666725356886589899999999999999982957364479998748998489996
Q ss_pred ECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCEEEEEEECCCHHHCCCCCCCCCCCCCC
Q ss_conf 24444563045677739889999999985972100246666777---766687389972038834459998670775631
Q gi|254780439|r 926 VNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRP---DLSQIKHFAVKESVFPFNKFPGVDILLGPEMRS 1002 (1162)
Q Consensus 926 vNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~---~~~~~~~~aVK~pvFsF~k~~g~D~~LGpEMkS 1002 (1162)
T Consensus 300 vNPR~SRssalaSKaTGyPiA~vaaklalG~~L~ei~n~vT~~t~A~fEP~ldyv~vK~p~~~f~kf~~~~~~Lg~~mks 379 (1063)
T PRK05294 300 MNPRVSRSSALASKATGYPIAKVAAKLAVGYTLDEIKNDITGKTPASFEPSIDYVVTKIPRFAFEKFPGADRRLTTQMKS 379 (1063)
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHCCCCCC
T ss_conf 37750010688888738878999999871797578367644663144477566599970477710035854432430113
Q ss_pred CEEEEEEECCHHHHHHHHHHHCCCCCC
Q ss_conf 013777419999999999998388798
Q gi|254780439|r 1003 TGEVIGIDQDFPLAFAKSQLGIGVDLP 1029 (1162)
Q Consensus 1003 TGEVmgig~~~~eA~~Ka~~a~g~~lP 1029 (1162)
T Consensus 380 ~Gevm~igr~feea~~KAirSle~~~~ 406 (1063)
T PRK05294 380 VGEVMAIGRTFEESLQKALRSLEIGLT 406 (1063)
T ss_pred CCHHHHHCCHHHHHHHHHHHHHCCCCC
T ss_conf 410222223289999999984425866