HHsearch alignment for GI: 254780439 and conserved domain: TIGR00514
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=100.00 E-value=4.5e-44 Score=366.75 Aligned_cols=362 Identities=20% Similarity=0.326 Sum_probs=328.1
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCE---------------------EEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999996598069960686521123245863---------------------7984167889999998748567822
Q gi|254780439|r 641 CCHASFSLKEAGFETIMINCNPETVSTDYDIADR---------------------LYFESLTEEDILEILRVEQQKGELV 699 (1162)
Q Consensus 641 ~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDr---------------------LYFEplt~E~V~~I~~~E~p~g~~~ 699 (1162)
T Consensus 14 A~RIiRAC~ElGi~TVAV----------yS~aD~dalHV~LADEavCIGea~S~kSY---L~IpnI~aAA~~tG~~AiHP 80 (451)
T TIGR00514 14 ALRIIRACKELGIATVAV----------YSTADRDALHVLLADEAVCIGEAPSAKSY---LNIPNIIAAAEITGADAIHP 80 (451)
T ss_pred HHHHHHHHHHCCCCEEEE----------CCHHHHHHHHHHHHCCCCCCCCCHHHCCC---CHHHHHHHHHHHCCCCEECC
T ss_conf 889999888649863986----------00441332343430253006862211244---11588999887748807628
Q ss_pred EEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCC--C-CCCCHHHHHHHHHHCCCC
Q ss_conf 7998445124668--9888887598386127520331028678999888709866854--2-112156655565536971
Q gi|254780439|r 700 GIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRN--G-ISHSVEHARLIACEIGFP 774 (1162)
Q Consensus 700 ~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~--~-~a~s~eea~~~a~~iGyP 774 (1162)
T Consensus 81 GY-----GFLSENA~FAe~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS~GP~~~~~~e~~~~A~~IGyP 155 (451)
T TIGR00514 81 GY-----GFLSENADFAEICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGSDGPLVEDEEEAVRIAKEIGYP 155 (451)
T ss_pred CC-----CHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 87-----7344312478898738826667871201126886899999974887662388886310278899999747896
Q ss_pred EEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEC
Q ss_conf 67513444456541255489999999997521013221111223333333345577774567022012010010102307
Q gi|254780439|r 775 LLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQN 854 (1162)
Q Consensus 775 VLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg 854 (1162)
T Consensus 156 v~IKA~AGGGGRGmR~vR~~~El~~~~~~a-----------------~~EA~AAF~N~~VYiEKfienPRH~E~QVLAD~ 218 (451)
T TIGR00514 156 VIIKATAGGGGRGMRVVREEDELVKLIKAA-----------------RAEAAAAFNNDGVYIEKFIENPRHVEIQVLADK 218 (451)
T ss_pred EEEEEECCCCCCEEEEECCHHHHHHHHHHH-----------------HHHHHHCCCCCCEEEEEEECCCCEEEEEEEECC
T ss_conf 899962589972258862868999999999-----------------999974028796278633369940799987517
Q ss_pred C-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC-CCE-EEEEEECCCCC
Q ss_conf 9-84999852011021524576279816866899999999999999987413357624788512-885-99985244445
Q gi|254780439|r 855 D-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK-DGK-IYILEVNPRAS 931 (1162)
Q Consensus 855 ~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k-d~~-iYVIEvNpRaS 931 (1162)
T Consensus 219 ~GN~vyLg--ERDCSiQRR~QKllEEaPsP~Lt~ElR~~~G~~Av~aA~~iGY~GaGTvEFLld~~~~rFYFmEMNTRIQ 296 (451)
T TIGR00514 219 YGNVVYLG--ERDCSIQRRNQKLLEEAPSPALTSELREKMGDAAVKAAKSIGYTGAGTVEFLLDKNGQRFYFMEMNTRIQ 296 (451)
T ss_pred CCCEEEEC--CCCCCHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEECCEEEEEEECCCCEEEEEEECCEEE
T ss_conf 88878971--2146200046544654688877889999998999999986498003516888625887357765176021
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCC-CCCCCCCCCCCEEEEEEE
Q ss_conf 6304567773988999999998597210024666677776668738997203883445999-867077563101377741
Q gi|254780439|r 932 RTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGV-DILLGPEMRSTGEVIGID 1010 (1162)
Q Consensus 932 RtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~-D~~LGpEMkSTGEVmgig 1010 (1162)
T Consensus 297 VEHPVTEmvtGvDL~keQirvA~G~~L~~kQe~v~~~GHaieCRINA-EDP~~~F~PsPG~i~~ylpP--------GG~g 367 (451)
T TIGR00514 297 VEHPVTEMVTGVDLIKEQIRVAAGEKLSLKQEDVKLRGHAIECRINA-EDPIKNFLPSPGRITSYLPP--------GGPG 367 (451)
T ss_pred EEECCEEEEECHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCC--------CCCC
T ss_conf 11032014600257888998737895664311479998899865145-58787786888501554687--------9752
Q ss_pred CCHHHHHHHHHHHCCCCCCCC-----CEEEEEECCHHHHHHHHHH-HHHHH
Q ss_conf 999999999999838879887-----2599996441289999999-99998
Q gi|254780439|r 1011 QDFPLAFAKSQLGIGVDLPHE-----GTVFVSVRDADKKRIVPII-QNFKK 1055 (1162)
Q Consensus 1011 ~~~~eA~~Ka~~a~g~~lP~~-----g~vfisv~d~dK~~~~~~a-~~l~~ 1055 (1162)
T Consensus 368 VR~DSh~Y-----~gY~iPPyYDSmIaKlI--~~G~~R~~AI~rMKrAL~E 411 (451)
T TIGR00514 368 VRVDSHVY-----SGYTIPPYYDSMIAKLI--TYGKTREEAIARMKRALSE 411 (451)
T ss_pred EECCCEEC-----CCCCCCCCCHHCCEEEE--ECCCCHHHHHHHHHHHHHH
T ss_conf 20100344-----87876984020201246--4058988999999887542