HHsearch alignment for GI: 254780439 and conserved domain: TIGR00514

>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=100.00  E-value=4.5e-44  Score=366.75  Aligned_cols=362  Identities=20%  Similarity=0.326  Sum_probs=328.1

Q ss_pred             HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCE---------------------EEEEECCHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999996598069960686521123245863---------------------7984167889999998748567822
Q gi|254780439|r  641 CCHASFSLKEAGFETIMINCNPETVSTDYDIADR---------------------LYFESLTEEDILEILRVEQQKGELV  699 (1162)
Q Consensus       641 ~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDr---------------------LYFEplt~E~V~~I~~~E~p~g~~~  699 (1162)
T Consensus        14 A~RIiRAC~ElGi~TVAV----------yS~aD~dalHV~LADEavCIGea~S~kSY---L~IpnI~aAA~~tG~~AiHP   80 (451)
T TIGR00514        14 ALRIIRACKELGIATVAV----------YSTADRDALHVLLADEAVCIGEAPSAKSY---LNIPNIIAAAEITGADAIHP   80 (451)
T ss_pred             HHHHHHHHHHCCCCEEEE----------CCHHHHHHHHHHHHCCCCCCCCCHHHCCC---CHHHHHHHHHHHCCCCEECC
T ss_conf             889999888649863986----------00441332343430253006862211244---11588999887748807628


Q ss_pred             EEEEECCCHHHHH--HHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCC--C-CCCCHHHHHHHHHHCCCC
Q ss_conf             7998445124668--9888887598386127520331028678999888709866854--2-112156655565536971
Q gi|254780439|r  700 GIIVQFGGQTPLK--LSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRN--G-ISHSVEHARLIACEIGFP  774 (1162)
Q Consensus       700 ~vi~q~gGqt~~~--la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~--~-~a~s~eea~~~a~~iGyP  774 (1162)
T Consensus        81 GY-----GFLSENA~FAe~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS~GP~~~~~~e~~~~A~~IGyP  155 (451)
T TIGR00514        81 GY-----GFLSENADFAEICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGSDGPLVEDEEEAVRIAKEIGYP  155 (451)
T ss_pred             CC-----CHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf             87-----7344312478898738826667871201126886899999974887662388886310278899999747896


Q ss_pred             EEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEEC
Q ss_conf             67513444456541255489999999997521013221111223333333345577774567022012010010102307
Q gi|254780439|r  775 LLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQN  854 (1162)
Q Consensus       775 VLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg  854 (1162)
T Consensus       156 v~IKA~AGGGGRGmR~vR~~~El~~~~~~a-----------------~~EA~AAF~N~~VYiEKfienPRH~E~QVLAD~  218 (451)
T TIGR00514       156 VIIKATAGGGGRGMRVVREEDELVKLIKAA-----------------RAEAAAAFNNDGVYIEKFIENPRHVEIQVLADK  218 (451)
T ss_pred             EEEEEECCCCCCEEEEECCHHHHHHHHHHH-----------------HHHHHHCCCCCCEEEEEEECCCCEEEEEEEECC
T ss_conf             899962589972258862868999999999-----------------999974028796278633369940799987517


Q ss_pred             C-CEEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC-CCE-EEEEEECCCCC
Q ss_conf             9-84999852011021524576279816866899999999999999987413357624788512-885-99985244445
Q gi|254780439|r  855 D-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIK-DGK-IYILEVNPRAS  931 (1162)
Q Consensus       855 ~-~v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~k-d~~-iYVIEvNpRaS  931 (1162)
T Consensus       219 ~GN~vyLg--ERDCSiQRR~QKllEEaPsP~Lt~ElR~~~G~~Av~aA~~iGY~GaGTvEFLld~~~~rFYFmEMNTRIQ  296 (451)
T TIGR00514       219 YGNVVYLG--ERDCSIQRRNQKLLEEAPSPALTSELREKMGDAAVKAAKSIGYTGAGTVEFLLDKNGQRFYFMEMNTRIQ  296 (451)
T ss_pred             CCCEEEEC--CCCCCHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEECCEEEEEEECCCCEEEEEEECCEEE
T ss_conf             88878971--2146200046544654688877889999998999999986498003516888625887357765176021


Q ss_pred             CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHHHCCCC-CCCCCCCCCCCEEEEEEE
Q ss_conf             6304567773988999999998597210024666677776668738997203883445999-867077563101377741
Q gi|254780439|r  932 RTVPFIAKAIGFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGV-DILLGPEMRSTGEVIGID 1010 (1162)
Q Consensus       932 RtvPfvSKatG~pl~~iAt~v~lG~~L~~~~~~~~~~~~~~~~~~~aVK~pvFsF~k~~g~-D~~LGpEMkSTGEVmgig 1010 (1162)
T Consensus       297 VEHPVTEmvtGvDL~keQirvA~G~~L~~kQe~v~~~GHaieCRINA-EDP~~~F~PsPG~i~~ylpP--------GG~g  367 (451)
T TIGR00514       297 VEHPVTEMVTGVDLIKEQIRVAAGEKLSLKQEDVKLRGHAIECRINA-EDPIKNFLPSPGRITSYLPP--------GGPG  367 (451)
T ss_pred             EEECCEEEEECHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEEECC-CCCCCCCCCCCCCCCCCCCC--------CCCC
T ss_conf             11032014600257888998737895664311479998899865145-58787786888501554687--------9752


Q ss_pred             CCHHHHHHHHHHHCCCCCCCC-----CEEEEEECCHHHHHHHHHH-HHHHH
Q ss_conf             999999999999838879887-----2599996441289999999-99998
Q gi|254780439|r 1011 QDFPLAFAKSQLGIGVDLPHE-----GTVFVSVRDADKKRIVPII-QNFKK 1055 (1162)
Q Consensus      1011 ~~~~eA~~Ka~~a~g~~lP~~-----g~vfisv~d~dK~~~~~~a-~~l~~ 1055 (1162)
T Consensus       368 VR~DSh~Y-----~gY~iPPyYDSmIaKlI--~~G~~R~~AI~rMKrAL~E  411 (451)
T TIGR00514       368 VRVDSHVY-----SGYTIPPYYDSMIAKLI--TYGKTREEAIARMKRALSE  411 (451)
T ss_pred             EECCCEEC-----CCCCCCCCCHHCCEEEE--ECCCCHHHHHHHHHHHHHH
T ss_conf             20100344-----87876984020201246--4058988999999887542