HHsearch alignment for GI: 254780439 and conserved domain: TIGR00768

>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family; InterPro: IPR004666 Escherichia coli RimK adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6. Mutation of the Glu-Glu terminus to Lys-Glu blocked addition. S6 has the C-terminal sequence Glu-Glu in few species, suggesting the homolog of rimK may have a function other than S6 modification in those species. However, most species having a member of this protein subfamily do not have an S6 homolog ending in Glu-Glu.; GO: 0006464 protein modification process.
Probab=99.25  E-value=2.6e-09  Score=91.58  Aligned_cols=271  Identities=21%  Similarity=0.257  Sum_probs=194.4

Q ss_pred             HHHHHHHHHHHHCCC--CEEEEECCCCCCCCCCCCCCEEEEEEC-CHHHHHHHHHHHCCCCCCCEEEEEC-----CCHHH
Q ss_conf             189999999996598--069960686521123245863798416-7889999998748567822799844-----51246
Q gi|254780439|r  639 YCCCHASFSLKEAGF--ETIMINCNPETVSTDYDIADRLYFESL-TEEDILEILRVEQQKGELVGIIVQF-----GGQTP  710 (1162)
Q Consensus       639 y~~v~a~~aLr~~G~--~tImIN~NPETVSTDyd~sDrLYFEpl-t~E~V~~I~~~E~p~g~~~~vi~q~-----gGqt~  710 (1162)
T Consensus        18 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-P~~~~I~~~~~~~~~~~~-----~~~~d~----~~~R~~TPWv~~~~~   87 (321)
T TIGR00768        18 YDEKMLKEAAEERGIDYKVVTPPEIVLTFNQ-PAAFSIFYKEPRKNKELA-----LAELDV----VIVRIGTPWVSSFRG   87 (321)
T ss_pred             HHHHHHHHHHHHHCCCEEEECCHHHEECCCC-CCCCEEECCCCCCCCHHH-----HCCCCE----EEECCCCCCCCHHHH
T ss_conf             8999999999971795367604122003688-851001114541001023-----117888----998389975110268


Q ss_pred             HHHHHHHHHCCCEEEECCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCC--------CHHHHHHHHHHCC---CCEEEEC
Q ss_conf             6898888875983861275203310286789998887098668542112--------1566555655369---7167513
Q gi|254780439|r  711 LKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISH--------SVEHARLIACEIG---FPLLIRP  779 (1162)
Q Consensus       711 ~~la~~L~~~gv~ilGts~~~Id~aEDR~~F~~ll~~l~i~~p~~~~a~--------s~eea~~~a~~iG---yPVLVRP  779 (1162)
T Consensus        88 ~~~~r~lE~~G~~~~N~s-~aI~~a~dK~~s~~~L~~~G~P~P~~~~~~PqnfDReW~~~~a~~~ie~~g~lEfP~V~Kp  166 (321)
T TIGR00768        88 LAVLRALESLGVPVINSS-QAILNAGDKVLSHQLLAKAGVPLPRTGVAGPQNFDREWSPEEALKLIEEIGQLEFPVVLKP  166 (321)
T ss_pred             HHHHHHHHHCCCEECCCH-HHHHHCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             899999985896310706-9986214658999999958689873357366322435898899999987317642458717


Q ss_pred             CCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC--CCEEEEEEEEEECCCE
Q ss_conf             44445654125548999999999752101322111122333333334557777456702201--2010010102307984
Q gi|254780439|r  780 SYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLS--DAMEIDVDALCQNDQV  857 (1162)
Q Consensus       780 SyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~~~~~~~~~~~~~~vs~~~pVlIdkfl~--~a~EiEVDai~Dg~~v  857 (1162)
T Consensus       167 ~~GS~G~~V~l~~D~~~~~~~~e~-~~~~~------------------~~~~~~~~~QeyI~Pv~~~grDIR~fVvGd~v  227 (321)
T TIGR00768       167 VFGSWGRLVSLARDKQAAETLLEH-FEQLN------------------GPQYKVFLVQEYIKPVKPGGRDIRVFVVGDEV  227 (321)
T ss_pred             CCCCCCCEEEEEECHHHHHHHHHH-HHHHC------------------CCCCCEEEEEEEECCCCCCCCEEEEEEECCCE
T ss_conf             856354268985067899999999-97218------------------83323578872011325789318999988920


Q ss_pred             EEEEEECC-CCH----HCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC-----EEEEEEEC
Q ss_conf             99985201-102----152457627981686689999999999999998741335762478851288-----59998524
Q gi|254780439|r  858 IVVGIIEH-IEE----AGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDG-----KIYILEVN  927 (1162)
Q Consensus       858 ~I~gimEH-iE~----aGVHSGDS~~v~PpqsLs~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~-----~iYVIEvN  927 (1162)
T Consensus       228 ~-aA-~~R~~~~~~w~~N~a~GG~a~~~---~l~~----e~~~LA~ka~~a~g~-~v~giDlle~~~r~dw~GL~V~EVN  297 (321)
T TIGR00768       228 V-AA-IYRIITSGHWRTNLARGGKAEPC---SLTE----EIEELAIKAAKALGL-DVAGIDLLESKDRDDWGGLLVLEVN  297 (321)
T ss_pred             E-EE-EEECCCCCCHHHHHHCCCCCCCC---CCCH----HHHHHHHHHHHHHCC-CEEEEEEEECCCCCCCCCCEEEEEC
T ss_conf             1-33-35417883024355438821245---2588----999999999999768-3489977662685425783799984


Q ss_pred             CCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf             444563045677739889999999
Q gi|254780439|r  928 PRASRTVPFIAKAIGFPVAKVAAR  951 (1162)
Q Consensus       928 pRaSRtvPfvSKatG~pl~~iAt~  951 (1162)
T Consensus       298 ~--~~~f~~~~~~tgvniA~~l~~  319 (321)
T TIGR00768       298 A--NPEFKNSVKTTGVNIAGKLLD  319 (321)
T ss_pred             C--CCCCCCCEEECCCCHHHHHHH
T ss_conf             9--977001111116776899997