HHsearch alignment for GI: 254780439 and conserved domain: TIGR02068
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=99.00 E-value=4.9e-09 Score=89.31 Aligned_cols=279 Identities=20% Similarity=0.300 Sum_probs=186.7
Q ss_pred CCCCEEECCCCHHHHHHHHHHHCCC-----EEEECCCCCHHHHHHHHHHHCCCHHHHCCE---E-----ECCCHHHHHHH
Q ss_conf 1310043379999999999862898-----899758870268888998875962882875---7-----14998999860
Q gi|254780439|r 60 LADATYTEPITPEVVAKIIEKERPD-----AILPTTGGQTALNTALSLKRMGVLDRYGVE---M-----IGAKPETIDKA 126 (1162)
Q Consensus 60 ~aD~vY~ePlt~e~v~~Ii~~E~pD-----aIlp~~GGqtalnl~~~L~e~gil~~~~v~---~-----lG~~~~~I~~~ 126 (1162)
T Consensus 156 L~~~~~LGPST~~Iv~eA~~R~IP~~rL~~g~~vqlG-------------------YG~~qkri~at~td~Ts~iav~iA 216 (876)
T TIGR02068 156 LVADASLGPSTAAIVKEAEKRGIPYMRLSAGSLVQLG-------------------YGSKQKRIQATETDRTSAIAVEIA 216 (876)
T ss_pred HHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCEEECC-------------------CCCCCEEEEEECCCCCCEEEHHHH
T ss_conf 9973367987789999997378986873376445605-------------------775430343200257650101222
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 58899999999878988862000234433333233333334444444433332221111112334444444554448999
Q gi|254780439|r 127 EDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMA 206 (1162)
Q Consensus 127 edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 206 (1162)
T Consensus 217 ~DK~lTK~iL~~~GvPVP~G~~~-----------------------------------------------------~~~~ 243 (876)
T TIGR02068 217 CDKDLTKKILKAAGVPVPEGTVV-----------------------------------------------------QSAE 243 (876)
T ss_pred CCHHHHHHHHHHCCCCCCCCCHH-----------------------------------------------------HHHH
T ss_conf 36378999998478988887366-----------------------------------------------------7789
Q ss_pred HHHHHHHHCC-CCEEEEECCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEE-----------
Q ss_conf 9999998719-969994132678664511-169999999999899857998279866449978999999-----------
Q gi|254780439|r 207 VAVQALDEIG-LPLIIRPSFTLGGTGGGI-AYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEM----------- 273 (1162)
Q Consensus 207 ea~~~a~~iG-yPvivRps~~lGG~G~~i-v~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eV----------- 273 (1162)
T Consensus 244 ~a~~aa~~~GG~PvViKP~DGn~GrGv~~ni~~r~e~e~AY~~A~~~Sk~~~ViVEr~i~G-~dhRlLVVg~k~VAvA~R 322 (876)
T TIGR02068 244 EAWEAAEDLGGYPVVIKPYDGNHGRGVTINIETRDEIESAYEAAKEESKTSEVIVERYIKG-RDHRLLVVGGKLVAVAER 322 (876)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEEEECC-CCEEEEEECCEEEEEECC
T ss_conf 9999999718996899517799874378407774889999999986078660689876427-623899998968998618
Q ss_pred -----EEECCCCEEE-EEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH------------HCCCCCCC
Q ss_conf -----9728998899-96300000010000101343373228988999999999999987------------18345764
Q gi|254780439|r 274 -----MRDIKGNCIV-VCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKE------------IGVESGGA 335 (1162)
Q Consensus 274 -----irD~~gn~i~-v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~------------lgi~vG~~ 335 (1162)
T Consensus 323 ~PA~ViGDG~hTi~eLiG~~~N~DP~RG~Gh~~~L--tki~~D~~~~~~L~kqG~~ldsVp~kG~~V~Lr~~ANLSTGG- 399 (876)
T TIGR02068 323 VPAHVIGDGVHTIEELIGEQINKDPLRGDGHDKPL--TKIRLDSVAKLVLAKQGLTLDSVPAKGRIVYLRATANLSTGG- 399 (876)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCC--CCEEHHHHHHHHHHHCCCCCCCHHHCCCEEEEECCCCCCCCC-
T ss_conf 88868838720076640576467778888667788--834330799999985497511545409788863247744587-
Q ss_pred EEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 68999955898499985044431035788876346147677764134461013577567777666577677689854420
Q gi|254780439|r 336 NVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRF 415 (1162)
Q Consensus 336 nVQFAv~p~~~~~yvIEvNpR~sRssalaskatgypia~vaakl~~G~~L~ei~~~~~~~~~~a~~Ep~ldyv~vK~p~f 415 (1162)
T Consensus 400 ---~A~DrTD------eiHP~~~~~a~~aAk~iGLDiaG~------D~v~~di~~PL~~----------~~G~iVEVNA- 453 (876)
T TIGR02068 400 ---VAIDRTD------EIHPENIAIAVRAAKIIGLDIAGV------DVVTEDISKPLRD----------TDGAIVEVNA- 453 (876)
T ss_pred ---EEEECCC------CCCHHHHHHHHHHHHEEEEEECCE------EECCCCCCCCHHH----------CCCEEEEEEC-
T ss_conf ---3162257------538458999987520000012122------2003100037454----------5972999856-
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHH
Q ss_conf 121147766666773100100222267689999989
Q gi|254780439|r 416 TFEKFPGSDVTLTTSMKSVGEVMAIGRTFAESLQKA 451 (1162)
Q Consensus 416 ~f~kf~~~~~~Lgt~MkS~GEvm~iGr~f~eA~~KA 451 (1162)
T Consensus 454 ----aPGlrMH~~PS-------~G~pR~Va~Ai~d~ 478 (876)
T TIGR02068 454 ----APGLRMHLAPS-------QGKPRNVAKAIVDM 478 (876)
T ss_pred ----CCCHHHCCCCC-------CCCCCCCCHHHHHH
T ss_conf ----76634446777-------74698710268752