HHsearch alignment for GI: 254780439 and conserved domain: TIGR03169
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=91.23 E-value=0.58 Score=25.40 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=48.0
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHC---CCEEEEECCCCCEEECCCCCCCCEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 9997677542050546668889999999987---9789997487650107845131004337999999999986289889
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEE---GYRIILVNSNPATIMTDPDLADATYTEPITPEVVAKIIEKERPDAI 86 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~---Gi~vVlVNsNpaTi~TD~~~aD~vY~ePlt~e~v~~Ii~~E~pDaI 86 (1162)
T Consensus 2 iVIvGgG-----------~aG~~~a~~L~~~~~~~~~ItLId~~~~-----------~~y~~~lp~~~~g~~~~---~~i 56 (364)
T TIGR03169 2 LVLIGGG-----------HTHALVLRRWAMKPLPGVRVTLINPSST-----------TPYSGMLPGMIAGHYSL---DEI 56 (364)
T ss_pred EEEECCH-----------HHHHHHHHHHCCCCCCCCEEEEECCCCC-----------CEECCHHHHHHHCCCCH---HHE
T ss_conf 9999960-----------9999999997041789983999999886-----------51625169997404779---992
Q ss_pred EECCCCCHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHC
Q ss_conf 97588702688889988759628828757149989998605
Q gi|254780439|r 87 LPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAE 127 (1162)
Q Consensus 87 lp~~GGqtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~e 127 (1162)
T Consensus 57 ~~--------~~~~------~~~~~gv~~i~~~V~~ID~~~ 83 (364)
T TIGR03169 57 RI--------DLRR------LARQAGARFVIAEATGIDPDR 83 (364)
T ss_pred EC--------CHHH------HHHHCCCEEEEEEEEEEECCC
T ss_conf 21--------6899------997779499963789997688