HHsearch alignment for GI: 254780439 and conserved domain: pfam00289
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=99.68 E-value=5.6e-17 Score=152.22 Aligned_cols=97 Identities=37% Similarity=0.540 Sum_probs=92.2
Q ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEECC--------CCHHHHHHHH
Q ss_conf 56999976775420505466688899999999879789997487650107845131004337--------9999999999
Q gi|254780439|r 7 LKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTEP--------ITPEVVAKII 78 (1162)
Q Consensus 7 ikkvLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~eP--------lt~e~v~~Ii 78 (1162)
T Consensus 1 i~kvLIanrGei-----------A~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~~~Yl~~~~Ii~ia 69 (109)
T pfam00289 1 IKKVLVANRGEI-----------AVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIA 69 (109)
T ss_pred CCEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 948999888799-----------999999999869979999633441522566505765347998321113799999999
Q ss_pred HHHCCCEEEECCCCCHHHHHHHHHHHCCCHHH----HCCEEECCCHHHH
Q ss_conf 86289889975887026888899887596288----2875714998999
Q gi|254780439|r 79 EKERPDAILPTTGGQTALNTALSLKRMGVLDR----YGVEMIGAKPETI 123 (1162)
Q Consensus 79 ~~E~pDaIlp~~GGqtalnl~~~L~e~gil~~----~~v~~lG~~~~~I 123 (1162)
T Consensus 70 ~~~~~~aihpGyG---------flsEn~~fa~~~~~~Gi~fiGPs~~~i 109 (109)
T pfam00289 70 EKEGADAIHPGYG---------FLSENAEFAEACEKAGITFIGPSPEAI 109 (109)
T ss_pred HHHCCCEEECCCC---------CCCCCHHHHHHHHHCCCEEECCCHHHC
T ss_conf 9818896877976---------233599999999988898999583549