HHsearch alignment for GI: 254780439 and conserved domain: pfam00289
>pfam00289 CPSase_L_chain Carbamoyl-phosphate synthase L chain, N-terminal domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117.
Probab=99.49 E-value=5.6e-14 Score=128.49 Aligned_cols=96 Identities=34% Similarity=0.498 Sum_probs=89.8
Q ss_pred CEEEEECCCCEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEE--------CCHHHHHHHHH
Q ss_conf 4189972763020147665318999999999659806996068652112324586379841--------67889999998
Q gi|254780439|r 619 KKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINCNPETVSTDYDIADRLYFES--------LTEEDILEILR 690 (1162)
Q Consensus 619 kkviVlGsGp~RIGqgiEFDy~~v~a~~aLr~~G~~tImIN~NPETVSTDyd~sDrLYFEp--------lt~E~V~~I~~ 690 (1162)
T Consensus 2 ~kvLIanrGei-----------A~ri~rt~re~gi~~v~i~s~~d~~s~~~~~ad~~~~~~~~~~~~~Yl~~~~Ii~ia~ 70 (109)
T pfam00289 2 KKVLVANRGEI-----------AVRIIRALRELGIETVAVNSNPDTVSTHVRLADEAYFLGPGPASESYLNIERILDIAE 70 (109)
T ss_pred CEEEEECCCHH-----------HHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 48999888799-----------9999999998699799996334415225665057653479983211137999999999
Q ss_pred HHCCCCCCCEEEEECCCHHHHH----HHHHHHHCCCEEEECCCCHH
Q ss_conf 7485678227998445124668----98888875983861275203
Q gi|254780439|r 691 VEQQKGELVGIIVQFGGQTPLK----LSKILEKNQIPILGTQPDSI 732 (1162)
Q Consensus 691 ~E~p~g~~~~vi~q~gGqt~~~----la~~L~~~gv~ilGts~~~I 732 (1162)
T Consensus 71 ~~~-------~~aihpGyGflsEn~~fa~~~~~~Gi~fiGPs~~~i 109 (109)
T pfam00289 71 KEG-------ADAIHPGYGFLSENAEFAEACEKAGITFIGPSPEAI 109 (109)
T ss_pred HHC-------CCEEECCCCCCCCCHHHHHHHHHCCCEEECCCHHHC
T ss_conf 818-------896877976233599999999988898999583549