HHsearch alignment for GI: 254780439 and conserved domain: pfam02254
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=96.10 E-value=0.012 Score=38.85 Aligned_cols=107 Identities=19% Similarity=0.384 Sum_probs=71.0
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEECCCCCCCCEEEC-CCCHHHHHHHHHHHCCCEEEE
Q ss_conf 9997677542050546668889999999987978999748765010784513100433-799999999998628988997
Q gi|254780439|r 10 LLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTE-PITPEVVAKIIEKERPDAILP 88 (1162)
Q Consensus 10 vLviGsGpi~IGqa~EfDys~~qa~~alke~Gi~vVlVNsNpaTi~TD~~~aD~vY~e-Plt~e~v~~Ii~~E~pDaIlp 88 (1162)
T Consensus 1 viI~G~g~~-----------G~~la~~L~~~~-~v~vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~-a~i~~a~~vi~ 67 (115)
T pfam02254 1 IIIIGYGRV-----------GRSLAEELREGG-PVVVIDKDPERVEELREEGVPVVVGDATDEEVLEE-AGIEDADAVVA 67 (115)
T ss_pred CEEECCCHH-----------HHHHHHHHHHCC-CEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHH-HCCCCCCEEEE
T ss_conf 999878889-----------999999998089-99999998799877886698699995688667876-19202879999
Q ss_pred CCCC-CHHHHHHHHHHHCCCHHHHCCEEECCCHHHHHHHCCHHHHHHHHHHCCC
Q ss_conf 5887-0268888998875962882875714998999860588999999998789
Q gi|254780439|r 89 TTGG-QTALNTALSLKRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPL 141 (1162)
Q Consensus 89 ~~GG-qtalnl~~~L~e~gil~~~~v~~lG~~~~~I~~~edR~~F~~~l~~~gi 141 (1162)
T Consensus 68 ~~~~d~~n~~~~~~~r~-----------~~~~~~iiar~~~~~-~~~~l~~~Ga 109 (115)
T pfam02254 68 ATGDDEANILIVLLARE-----------LNPAKKIIARANDPE-HAELLRRLGA 109 (115)
T ss_pred ECCCHHHHHHHHHHHHH-----------HCCCCEEEEEECCHH-HHHHHHHCCC
T ss_conf 62984999999999999-----------789980999987899-9999997698