HHsearch alignment for GI: 254780439 and conserved domain: pfam02786
>pfam02786 CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. This important enzyme initiates both the urea cycle and the biosynthesis of arginine and/or pyrimidines. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain. The small chain promotes the hydrolysis of glutamine to ammonia, which is used by the large chain to synthesize carbamoyl phosphate. See pfam00988. The small chain has a GATase domain in the carboxyl terminus. See pfam00117. The ATP binding domain (this one) has an ATP-grasp fold.
Probab=100.00 E-value=5.7e-37 Score=310.53 Aligned_cols=206 Identities=25% Similarity=0.333 Sum_probs=188.4
Q ss_pred CHHHHHHHHHHCCCCCCCCC--CCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 86789998887098668542--1121566555655369716751344445654125548999999999752101322111
Q gi|254780439|r 737 DRDRFQKLLMELDLNQPRNG--ISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIK 814 (1162)
Q Consensus 737 DR~~F~~ll~~l~i~~p~~~--~a~s~eea~~~a~~iGyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~~ 814 (1162)
T Consensus 1 Dk~~~k~~l~~~GvP~~~~~~~~~~s~ee~~~~a~~iG~PvvvKp~~~g~g~G~~~v~~~~eL~~a~~~a~~~a~----- 75 (211)
T pfam02786 1 DKVLFKAAMKEAGVPTVPGTAGPVETEEEALAAAKEIGYPVIIKAAFGGGGLGMGIARNEEELAELFALALAEAP----- 75 (211)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEHHHHHHHHHHHHHHHHHH-----
T ss_conf 989999999986989199878887999999999998599789973777899875124127789999999987514-----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCC-EEEEEEECCCCHHCCCCCCEEEEECCCCCCHHHHHHH
Q ss_conf 122333333334557777456702201201001010230798-4999852011021524576279816866899999999
Q gi|254780439|r 815 RQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQ-VIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDEL 893 (1162)
Q Consensus 815 ~~~~~~~~~~~~~vs~~~pVlIdkfl~~a~EiEVDai~Dg~~-v~I~gimEHiE~aGVHSGDS~~v~PpqsLs~~~~~~i 893 (1162)
T Consensus 76 ------------~~~~~~~vlvEe~i~g~~ei~v~v~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~Pa~~l~~~~~e~i 141 (211)
T pfam02786 76 ------------AAFGNPQVLVEKSLKGPKHIEYQVLRDAHGNCITVCNRECSD--QRRTQKSIEVAPSQTLTDEERQML 141 (211)
T ss_pred ------------HCCCCCCEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEEEE--ECCCCCEEEEECCCCCCHHHHHHH
T ss_conf ------------316998389974047765899999982799899999633225--033584446817999999999999
Q ss_pred HHHHHHHHHHCCCCCCCEEEEEE--CCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCC
Q ss_conf 99999998741335762478851--288599985244445630456777398899999999859721002
Q gi|254780439|r 894 ISQTKALAGALNVIGLINVQYAI--KDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDAS 961 (1162)
Q Consensus 894 ~~~t~~ia~~L~v~G~~NIQfa~--kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iAt~v~lG~~L~~~ 961 (1162)
T Consensus 142 ~~~a~~~~~~lg~~G~~~vef~~~~~~~~~~~iEvNpR~~~~~~~t~~~tg~~l~~~~~~~a~G~~l~e~ 211 (211)
T pfam02786 142 REAAVKIARHLGYVGAGTVEFALDPFSGEYYFIEMNTRLQVSHALAEKATGYDLAKEAAKIALGYPLPEL 211 (211)
T ss_pred HHHHHHHHHHCCEECCCEEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 9999998752644233247899967999599996708968347788998794899999999779997869