HHsearch alignment for GI: 254780439 and conserved domain: pfam02787
>pfam02787 CPSase_L_D3 Carbamoyl-phosphate synthetase large chain, oligomerisation domain. Carbamoyl-phosphate synthase catalyses the ATP-dependent synthesis of carbamyl-phosphate from glutamine or ammonia and bicarbonate. The carbamoyl-phosphate synthase (CPS) enzyme in prokaryotes is a heterodimer of a small and large chain.
Probab=100.00 E-value=1.2e-39 Score=331.66 Aligned_cols=122 Identities=44% Similarity=0.800 Sum_probs=116.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99976079824899999999738978899877188989999999999999987530376027999986533799889998
Q gi|254780439|r 479 LRSAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDFQNLQAIKAMGFSDARLSI 558 (1162)
Q Consensus 479 l~~~L~~p~~~Rl~~i~eAlr~G~sv~ei~elT~Id~wFl~~i~~iv~~e~~l~~~~~~~~~~~l~~aK~~GFSD~~IA~ 558 (1162)
T Consensus 1 l~~~L~~p~~~Rl~~i~eAlr~G~sveeI~~~TkID~wFL~~i~~Iv~~e~~l~~~~-~~~~~~l~~aK~~GFSD~~IA~ 79 (122)
T pfam02787 1 LLEKLRHPTDERIFAIAEALRRGYSVEEIHELTKIDPWFLEKIKEIVELEKELKKGD-PLSDDLLLKAKKLGFSDAQIAK 79 (122)
T ss_pred CHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHCCCHHHHHH
T ss_conf 957775899359999999999599999999988968999999999999999998548-9999999999994999899998
Q ss_pred HHCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEEC
Q ss_conf 8589999999889863984799862143244366585589720
Q gi|254780439|r 559 LSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYSTY 601 (1162)
Q Consensus 559 l~~~~e~~Vr~~R~~~~i~P~yK~VDtcAgEF~a~T~Y~YsTY 601 (1162)
T Consensus 80 l~~~~e~~Ir~~R~~~~i~P~yk~VDTcAaEF~a~TpY~YSTY 122 (122)
T pfam02787 80 LLGVTEEEVRKLRKELGIRPVYKMVDTCAAEFEAKTPYYYSTY 122 (122)
T ss_pred HHCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 8398699999999987991226210385205577998555259