HHsearch alignment for GI: 254780439 and conserved domain: pfam07478
>pfam07478 Dala_Dala_lig_C D-ala D-ala ligase C-terminus. This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Probab=99.91 E-value=2.4e-22 Score=194.73 Aligned_cols=188 Identities=20% Similarity=0.305 Sum_probs=154.4
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99987898886200023443333323333333444444443333222111111233444444455444899999999987
Q gi|254780439|r 135 AMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAMAVAVQALDE 214 (1162)
Q Consensus 135 ~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ea~~~a~~ 214 (1162)
T Consensus 1 ll~~~Giptp~~~~v~~~~-------------------------------------------------~~~~~~~~i~~~ 31 (201)
T pfam07478 1 LLKAAGIPVAPFIVLTRED-------------------------------------------------WVLATIEKVEEK 31 (201)
T ss_pred CHHHCCCCCCCEEEEECCC-------------------------------------------------CCHHHHHHHHHH
T ss_conf 9556599999908982532-------------------------------------------------343579999986
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCCCCC
Q ss_conf 19969994132678664511169999999999899857998279866449978999999972899889996300000010
Q gi|254780439|r 215 IGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMG 294 (1162)
Q Consensus 215 iGyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g~kEiE~eVirD~~gn~i~v~~~En~dp~G 294 (1162)
T Consensus 32 lg~P~vvKP~~~gss~Gv~~v~~~~el~~~i~~~~~~~--~~vlVEefi~G-~E~~v~vl~~~--~~~~~~~~e~~~~~~ 106 (201)
T pfam07478 32 LGYPVFVKPANLGSSVGISKVTSREELQSAIEEAFQYD--NKVLIEEAIEG-REIECAVLGNE--DLEVSPVGEIRLSGG 106 (201)
T ss_pred CCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHCC--CCEEEEECCCC-CEEEEEEEECC--CEEEEEEEEEECCCC
T ss_conf 59988999899998668799958468799999987459--80799985669-67999997089--808987589943775
Q ss_pred CC-------CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECC--CCCHHHHH--
Q ss_conf 00-------01013433732289889999999999999871834576468999955898499985044--43103578--
Q gi|254780439|r 295 VH-------TGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNP--RVSRSSAL-- 363 (1162)
Q Consensus 295 iH-------tGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNp--R~sRssal-- 363 (1162)
T Consensus 107 ~~~~~~k~~~~~~~~~~Pa-~l~~~~~~~i~~~A~~~~~aLg~-~g~~rvD~~~d-~~g~~~vlEvN~~Pg~~~~s~~~~ 183 (201)
T pfam07478 107 FYDYEAKYILSSAQIIVPA-DLPEEVEEQIQELALKAYKALGC-RGLARIDFFLT-EDGEIYLNEVNTMPGFTSISLYPR 183 (201)
T ss_pred EEEHHHEECCCCCEEEECC-CCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEEEC-CCCCEEEEEECCCCCCCCCCHHHH
T ss_conf 0267680136872376156-68599999999999999998488-76057999996-899499999549799986769999
Q ss_pred HHHHHCCCHHHHHHHH
Q ss_conf 8876346147677764
Q gi|254780439|r 364 ASKATGFPIAKIAAKL 379 (1162)
Q Consensus 364 askatgypia~vaakl 379 (1162)
T Consensus 184 ~a~~~G~sy~~l~~~i 199 (201)
T pfam07478 184 MWAAAGLSYPDLIDQL 199 (201)
T ss_pred HHHHCCCCHHHHHHHH
T ss_conf 9998199999999998