HHsearch alignment for GI: 254780439 and conserved domain: pfam08443
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=99.80 E-value=1.2e-17 Score=157.57 Aligned_cols=178 Identities=21% Similarity=0.309 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 0286789998887098668542112156655565536-971675134444565412554899999999975210132211
Q gi|254780439|r 735 AEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEI-GFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEI 813 (1162)
Q Consensus 735 aEDR~~F~~ll~~l~i~~p~~~~a~s~eea~~~a~~i-GyPVLVRPSyVLGG~~M~Iv~~~~eL~~yl~~a~~~~~~~~~ 813 (1162)
T Consensus 1 a~DK~~tk~ll~~~Gip~P~~~~~~~~~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~~~el~~~~~~~~~------- 73 (190)
T pfam08443 1 ARDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEAFKW------- 73 (190)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHHH-------
T ss_conf 9788999999998797979989988999999999980898389967889998455886063777788888863-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCC--EEEEEEEEEECCCEEEEEEECCCC-----HHCCCCCCEEEEECCCCCC
Q ss_conf 112233333333455777745670220120--100101023079849998520110-----2152457627981686689
Q gi|254780439|r 814 KRQYPNDKTGQINTLLGTHPLLFDSYLSDA--MEIDVDALCQNDQVIVVGIIEHIE-----EAGIHSGDSACSLPSRSLS 886 (1162)
Q Consensus 814 ~~~~~~~~~~~~~~vs~~~pVlIdkfl~~a--~EiEVDai~Dg~~v~I~gimEHiE-----~aGVHSGDS~~v~PpqsLs 886 (1162)
T Consensus 74 ----------------~~~~vlvqefI~~~~~~dirv~vi--~~~~~-~~-~~~~~~~~~~~~n~~~g~~~---~~~~l~ 130 (190)
T pfam08443 74 ----------------LKNQILVQEFIAEAGNRDIRCLVV--GGEVV-GA-IHRQSNEGDFRTNLHRGGVA---EPYQLS 130 (190)
T ss_pred ----------------CCCCEEEEEEEECCCCCEEEEEEE--CCCEE-EE-EEEECCCCCCCCCCCCCCEE---CCCCCC
T ss_conf ----------------487377555660478854899996--06336-78-99974667621432468624---587668
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHCCCHHHHH
Q ss_conf 999999999999998741335762478851288599985244445630456777398899999
Q gi|254780439|r 887 QQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVA 949 (1162)
Q Consensus 887 ~~~~~~i~~~t~~ia~~L~v~G~~NIQfa~kd~~iYVIEvNpRaSRtvPfvSKatG~pl~~iA 949 (1162)
T Consensus 131 ~e----~~e~a~~a~~algl-~~~gVD~~~~~~g~~vlEvN~--~Pg~~~~~~~~g~~i~~~i 186 (190)
T pfam08443 131 QE----EEEIAIKAAQAMGL-DVLGVDIFRSKRGLLVCEVNS--SPGLKGIERTTGINIAIKL 186 (190)
T ss_pred HH----HHHHHHHHHHHHCC-CEEEEEEEEECCCEEEEEECC--CCCCHHHHHHHCCCHHHHH
T ss_conf 89----99999999997389-979999999799679999669--8460478988794999999