HHsearch alignment for GI: 254780439 and conserved domain: pfam08443
>pfam08443 RimK RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK.
Probab=99.79 E-value=4.5e-17 Score=152.96 Aligned_cols=184 Identities=19% Similarity=0.232 Sum_probs=144.3
Q ss_pred HCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 05889999999987898886200023443333323333333444444443333222111111233444444455444899
Q gi|254780439|r 126 AEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHRYICHAM 205 (1162)
Q Consensus 126 ~edR~~F~~~l~~~gip~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 205 (1162)
T Consensus 1 a~DK~~tk~ll~~~Gip~P~~~~~-----------------------------------------------------~~~ 27 (190)
T pfam08443 1 ARDKAKSHQLLAKHGIPVPNTGLA-----------------------------------------------------WSP 27 (190)
T ss_pred CCCHHHHHHHHHHCCCCCCCEEEE-----------------------------------------------------CCH
T ss_conf 978899999999879797998998-----------------------------------------------------899
Q ss_pred HHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CEEEEEEEEEECCCCEE
Q ss_conf 9999999871-99699941326786645111699999999998998579982798664499--78999999972899889
Q gi|254780439|r 206 AVAVQALDEI-GLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTTEVLIEESVLG--WKEYELEMMRDIKGNCI 282 (1162)
Q Consensus 206 ~ea~~~a~~i-GyPvivRps~~lGG~G~~iv~n~eeL~~~~~~al~~s~~~~vlIeksl~g--~kEiE~eVirD~~gn~i 282 (1162)
T Consensus 28 ~~~~~~~~~~~g~PvVvKP~~g~~g~gV~~v~~~~el~~~~~~~~~~~--~~vlvqefI~~~~~~dirv~vi~~~~~~~~ 105 (190)
T pfam08443 28 EDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAEDEQSLEQLLEAFKWLK--NQILVQEFIAEAGNRDIRCLVVGGEVVGAI 105 (190)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHCC--CCEEEEEEEECCCCCEEEEEEECCCEEEEE
T ss_conf 999999998089838996788999845588606377778888886348--737755566047885489999606336789
Q ss_pred EEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCEEEEEEECCCCCHHHH
Q ss_conf 99630000001000010134337322898899999999999998718345764689999558984999850444310357
Q gi|254780439|r 283 VVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSA 362 (1162)
Q Consensus 283 ~v~~~En~dp~GiHtGDSi~vaP~qTL~d~~~q~LR~~a~kI~r~lgi~vG~~nVQFAv~p~~~~~yvIEvNpR~sRssa 362 (1162)
T Consensus 106 ~~~~~~~~~~~n~~~g~~~~--~-~~l~~e----~~e~a~~a~~algl--~~~gVD~~~~~--~g~~vlEvN~--~Pg~~ 172 (190)
T pfam08443 106 HRQSNEGDFRTNLHRGGVAE--P-YQLSQE----EEEIAIKAAQAMGL--DVLGVDIFRSK--RGLLVCEVNS--SPGLK 172 (190)
T ss_pred EEECCCCCCCCCCCCCCEEC--C-CCCCHH----HHHHHHHHHHHHCC--CEEEEEEEEEC--CCEEEEEECC--CCCCH
T ss_conf 99746676214324686245--8-766889----99999999997389--97999999979--9679999669--84604
Q ss_pred HHHHHHCCCHHHHHH
Q ss_conf 888763461476777
Q gi|254780439|r 363 LASKATGFPIAKIAA 377 (1162)
Q Consensus 363 laskatgypia~vaa 377 (1162)
T Consensus 173 ~~~~~~g~~i~~~i~ 187 (190)
T pfam08443 173 GIERTTGINIAIKLI 187 (190)
T ss_pred HHHHHHCCCHHHHHH
T ss_conf 789887949999998