RPSBLAST alignment for GI: 254780439 and conserved domain: TIGR01369
>gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. Length = 1050
Score = 1495 bits (3872), Expect = 0.0
Identities = 608/1144 (53%), Positives = 792/1144 (69%), Gaps = 96/1144 (8%)
Query: 2 PKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLA 61
PKR D+K +L+IG+GPIVIGQA EFDYSG+QACKALKEEGYR+ILVNSNPATIMTDP++A
Sbjct: 1 PKRTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMA 60
Query: 62 DATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPE 121
D Y EP+TPE V KIIEKERPDAILPT GGQTALN A+ L+ GVL++YGVE++G E
Sbjct: 61 DKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVE 120
Query: 122 TIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAA 181
I KAEDR LF +AM+ I P+S
Sbjct: 121 AIKKAEDRELFREAMKEIGEPVPES----------------------------------- 145
Query: 182 LYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEF 241
I H++ A+ A EIG P+I+RP+FTLGGTGGGIAYNR E
Sbjct: 146 ------------------EIAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREEL 187
Query: 242 LEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSI 301
EI E L ASP +VL+E+S+ GWKE E E+MRD NCI VC++EN DPMGVHTGDSI
Sbjct: 188 KEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMENFDPMGVHTGDSI 247
Query: 302 TVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSS 361
VAP+ TLTDKEYQ++R+A+I +++E+G+E GG NVQFA+NP +G+ VIE+NPRVSRSS
Sbjct: 248 VVAPSQTLTDKEYQMLRDASIKIIRELGIE-GGCNVQFALNPDSGRYYVIEVNPRVSRSS 306
Query: 362 ALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKFP 421
ALASKATG+PIAK+AAKLAVGY LDEL N +T G TPASFEPS+DY+V KIPR+ F+KF
Sbjct: 307 ALASKATGYPIAKVAAKLAVGYGLDELKNPVT-GTTPASFEPSLDYVVVKIPRWDFDKFA 365
Query: 422 GSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALRS 481
G D L T MKSVGEVMAIGRTF E+LQKALR LE G TG D + +E D D L
Sbjct: 366 GVDRKLGTQMKSVGEVMAIGRTFEEALQKALRSLEIGATGFD-LPDREVEPDED---LWR 421
Query: 482 AISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGL-PKDF 540
A+ P R+ +A+ALR GVSV+E H+ + ID WF+ +IK IVD+E + E L D
Sbjct: 422 ALKKPTDRRIFAIAEALRRGVSVDEIHELTKIDRWFLHKIKNIVDLEEELEEVKLTELDP 481
Query: 541 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600
+ L+ K +GFSDA+++ L G+ E+RK+R ++G+ PV+K VDTCA EF + T Y+YST
Sbjct: 482 ELLRRAKKLGFSDAQIARLIGVTEAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYST 541
Query: 601 YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC 660
YE + P +D+KK+++LG GPNRIGQG+EFDYCC HA +L+E G+ETIMIN
Sbjct: 542 YEGERDDVP-----FTDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINY 596
Query: 661 NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN 720
NPETVSTDYD +DRLYFE LT ED++ I+ +E+ + G+IVQFGGQTPL L+K LE+
Sbjct: 597 NPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPE----GVIVQFGGQTPLNLAKALEEA 652
Query: 721 QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPS 780
+PILGT P+SID AEDR++F +LL EL + QP+ + SVE A A EIG+P+L+RPS
Sbjct: 653 GVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIGYPVLVRPS 712
Query: 781 YVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL 840
YVLGGRAM+IVY+E L+ YL + + VS E HP+L D YL
Sbjct: 713 YVLGGRAMEIVYNEEELRRYLEEAVE--VSPE-------------------HPVLIDKYL 751
Query: 841 SDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKAL 900
DA+E+DVDA+ ++V++ GI+EHIEEAG+HSGDS C LP ++LS ++ D + + +
Sbjct: 752 EDAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKI 811
Query: 901 AGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960
A LNV GL+N+Q+A+KDG++Y++EVNPRASRTVPF++KA G P+ K+A R++ G+ L+
Sbjct: 812 AKELNVKGLMNIQFAVKDGEVYVIEVNPRASRTVPFVSKATGVPLIKLATRVMLGKKLEE 871
Query: 961 SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKS 1020
GK + K+ AVKE VF F+K GVD +LGPEM+STGEV+GI +D AF K+
Sbjct: 872 --LGVGKEKEP---KYVAVKEPVFSFSKLAGVDPVLGPEMKSTGEVMGIGRDLAEAFLKA 926
Query: 1021 QLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKI 1080
QL G +P +G+V +SVRD DK+ ++ + + + G+K+ ATEGTA+FL G++ + +
Sbjct: 927 QLSSGNRIPKKGSVLLSVRDKDKEELLDLARKLAEKGYKLYATEGTAKFLGEAGIKPELV 986
Query: 1081 NKVLEGRPHIEDAISNRQVHLVINTTE-GKKAIEDSKSLRRATLIRKIPYYTTIAGADAV 1139
KV EGRP+I D I N ++ LVINTT G D +RR L +P TT+ A+A
Sbjct: 987 LKVSEGRPNILDLIKNGEIELVINTTSKGAGTATDGYKIRREALDYGVPLITTLNTAEAF 1046
Query: 1140 FQAI 1143
+A+
Sbjct: 1047 AEAL 1050