RPSBLAST alignment for GI: 254780439 and conserved domain: TIGR01369

>gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. Length = 1050
 Score = 1495 bits (3872), Expect = 0.0
 Identities = 608/1144 (53%), Positives = 792/1144 (69%), Gaps = 96/1144 (8%)

Query: 2    PKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLA 61
            PKR D+K +L+IG+GPIVIGQA EFDYSG+QACKALKEEGYR+ILVNSNPATIMTDP++A
Sbjct: 1    PKRTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMA 60

Query: 62   DATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPE 121
            D  Y EP+TPE V KIIEKERPDAILPT GGQTALN A+ L+  GVL++YGVE++G   E
Sbjct: 61   DKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVE 120

Query: 122  TIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAA 181
             I KAEDR LF +AM+ I    P+S                                   
Sbjct: 121  AIKKAEDRELFREAMKEIGEPVPES----------------------------------- 145

Query: 182  LYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEF 241
                               I H++  A+ A  EIG P+I+RP+FTLGGTGGGIAYNR E 
Sbjct: 146  ------------------EIAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREEL 187

Query: 242  LEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSI 301
             EI E  L ASP  +VL+E+S+ GWKE E E+MRD   NCI VC++EN DPMGVHTGDSI
Sbjct: 188  KEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMENFDPMGVHTGDSI 247

Query: 302  TVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSS 361
             VAP+ TLTDKEYQ++R+A+I +++E+G+E GG NVQFA+NP +G+  VIE+NPRVSRSS
Sbjct: 248  VVAPSQTLTDKEYQMLRDASIKIIRELGIE-GGCNVQFALNPDSGRYYVIEVNPRVSRSS 306

Query: 362  ALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKFP 421
            ALASKATG+PIAK+AAKLAVGY LDEL N +T G TPASFEPS+DY+V KIPR+ F+KF 
Sbjct: 307  ALASKATGYPIAKVAAKLAVGYGLDELKNPVT-GTTPASFEPSLDYVVVKIPRWDFDKFA 365

Query: 422  GSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALRS 481
            G D  L T MKSVGEVMAIGRTF E+LQKALR LE G TG D +    +E D D   L  
Sbjct: 366  GVDRKLGTQMKSVGEVMAIGRTFEEALQKALRSLEIGATGFD-LPDREVEPDED---LWR 421

Query: 482  AISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGL-PKDF 540
            A+  P   R+  +A+ALR GVSV+E H+ + ID WF+ +IK IVD+E  + E  L   D 
Sbjct: 422  ALKKPTDRRIFAIAEALRRGVSVDEIHELTKIDRWFLHKIKNIVDLEEELEEVKLTELDP 481

Query: 541  QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600
            + L+  K +GFSDA+++ L G+   E+RK+R ++G+ PV+K VDTCA EF + T Y+YST
Sbjct: 482  ELLRRAKKLGFSDAQIARLIGVTEAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYST 541

Query: 601  YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC 660
            YE    + P      +D+KK+++LG GPNRIGQG+EFDYCC HA  +L+E G+ETIMIN 
Sbjct: 542  YEGERDDVP-----FTDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINY 596

Query: 661  NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN 720
            NPETVSTDYD +DRLYFE LT ED++ I+ +E+ +    G+IVQFGGQTPL L+K LE+ 
Sbjct: 597  NPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPE----GVIVQFGGQTPLNLAKALEEA 652

Query: 721  QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPS 780
             +PILGT P+SID AEDR++F +LL EL + QP+   + SVE A   A EIG+P+L+RPS
Sbjct: 653  GVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIGYPVLVRPS 712

Query: 781  YVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL 840
            YVLGGRAM+IVY+E  L+ YL + +   VS E                   HP+L D YL
Sbjct: 713  YVLGGRAMEIVYNEEELRRYLEEAVE--VSPE-------------------HPVLIDKYL 751

Query: 841  SDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKAL 900
             DA+E+DVDA+   ++V++ GI+EHIEEAG+HSGDS C LP ++LS ++ D +    + +
Sbjct: 752  EDAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKI 811

Query: 901  AGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960
            A  LNV GL+N+Q+A+KDG++Y++EVNPRASRTVPF++KA G P+ K+A R++ G+ L+ 
Sbjct: 812  AKELNVKGLMNIQFAVKDGEVYVIEVNPRASRTVPFVSKATGVPLIKLATRVMLGKKLEE 871

Query: 961  SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKS 1020
                 GK  +    K+ AVKE VF F+K  GVD +LGPEM+STGEV+GI +D   AF K+
Sbjct: 872  --LGVGKEKEP---KYVAVKEPVFSFSKLAGVDPVLGPEMKSTGEVMGIGRDLAEAFLKA 926

Query: 1021 QLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKI 1080
            QL  G  +P +G+V +SVRD DK+ ++ + +   + G+K+ ATEGTA+FL   G++ + +
Sbjct: 927  QLSSGNRIPKKGSVLLSVRDKDKEELLDLARKLAEKGYKLYATEGTAKFLGEAGIKPELV 986

Query: 1081 NKVLEGRPHIEDAISNRQVHLVINTTE-GKKAIEDSKSLRRATLIRKIPYYTTIAGADAV 1139
             KV EGRP+I D I N ++ LVINTT  G     D   +RR  L   +P  TT+  A+A 
Sbjct: 987  LKVSEGRPNILDLIKNGEIELVINTTSKGAGTATDGYKIRREALDYGVPLITTLNTAEAF 1046

Query: 1140 FQAI 1143
             +A+
Sbjct: 1047 AEAL 1050