RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase
large subunit [Candidatus Liberibacter asiaticus str. psy62]
(1162 letters)
>gnl|CDD|179998 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed.
Length = 1066
Score = 1953 bits (5063), Expect = 0.0
Identities = 694/1159 (59%), Positives = 853/1159 (73%), Gaps = 94/1159 (8%)
Query: 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDL 60
MPKR D+K +LIIG+GPIVIGQACEFDYSGTQACKAL+EEGYR++LVNSNPATIMTDP++
Sbjct: 1 MPKRTDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEM 60
Query: 61 ADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKP 120
ADATY EPITPE V KIIEKERPDAILPT GGQTALN A+ L GVL++YGVE+IGAK
Sbjct: 61 ADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKL 120
Query: 121 ETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDA 180
E IDKAEDR LF +AM+ I L P+S
Sbjct: 121 EAIDKAEDRELFKEAMKKIGLPVPRS---------------------------------- 146
Query: 181 ALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE 240
I H+M A++ +EIG P+IIRPSFTLGGTGGGIAYN E
Sbjct: 147 -------------------GIAHSMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEE 187
Query: 241 FLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDS 300
EIVE GL SP TEVLIEES+LGWKEYE E+MRD NCI+VCSIEN+DPMGVHTGDS
Sbjct: 188 LEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVCSIENIDPMGVHTGDS 247
Query: 301 ITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS 360
ITVAPA TLTDKEYQ++R+A+IA+++EIGVE+GG NVQFA+NPK+G+ +VIEMNPRVSRS
Sbjct: 248 ITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSRS 307
Query: 361 SALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKF 420
SALASKATG+PIAK+AAKLAVGYTLDE+ NDIT GKTPASFEPS+DY+VTKIPRF FEKF
Sbjct: 308 SALASKATGYPIAKVAAKLAVGYTLDEIKNDIT-GKTPASFEPSLDYVVTKIPRFAFEKF 366
Query: 421 PGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALR 480
PG+D L T MKSVGEVMAIGRTF ESLQKALR LE G+TGLDE + + LR
Sbjct: 367 PGADRRLGTQMKSVGEVMAIGRTFEESLQKALRSLEIGVTGLDE----DLFEEESLEELR 422
Query: 481 SAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDF 540
+ P P+RL +A+A R G SVEE H+ + IDPWF++QI+ IV++E ++E+GLP D
Sbjct: 423 EELKEPTPERLFYIAEAFRRGASVEEIHELTKIDPWFLEQIEEIVELEEELKENGLPLDA 482
Query: 541 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600
+ L+ K +GFSDAR++ L G+ +E+RK+R +G+HPV+K VDTCA EF + T Y YST
Sbjct: 483 ELLREAKRLGFSDARIAKLLGVTEDEVRKLRKALGIHPVYKRVDTCAAEFEADTPYYYST 542
Query: 601 YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC 660
YE E SDRKK+++LG GPNRIGQGIEFDYCC HA +L+EAG+ETIM+NC
Sbjct: 543 YEEE------CESNPSDRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNC 596
Query: 661 NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN 720
NPETVSTDYD +DRLYFE LT ED+LEI+ E+ K G+IVQFGGQTPLKL+K LE
Sbjct: 597 NPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPK----GVIVQFGGQTPLKLAKALEAA 652
Query: 721 QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPS 780
+PILGT PD+IDLAEDR+RF KLL +L + QP NG + SVE A +A EIG+P+L+RPS
Sbjct: 653 GVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIGYPVLVRPS 712
Query: 781 YVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL 840
YVLGGRAM+IVY E L+ Y+ + + + HP+L D +L
Sbjct: 713 YVLGGRAMEIVYDEEELERYMREAV---------------------KVSPDHPVLIDKFL 751
Query: 841 SDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKAL 900
A+E+DVDA+C + V++ GI+EHIEEAG+HSGDSACSLP ++LS+++ +E+ TK L
Sbjct: 752 EGAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKL 811
Query: 901 AGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960
A LNV+GL+NVQ+A+KD ++Y++EVNPRASRTVPF++KA G P+AK+AAR++ G+ L
Sbjct: 812 ALELNVVGLMNVQFAVKDDEVYVIEVNPRASRTVPFVSKATGVPLAKIAARVMLGKKLAE 871
Query: 961 SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKS 1020
G P + AVKE+VFPFNKFPGVD LLGPEM+STGEV+GID+ F AFAK+
Sbjct: 872 LGYTKGLIP-----PYVAVKEAVFPFNKFPGVDPLLGPEMKSTGEVMGIDRTFGEAFAKA 926
Query: 1021 QLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKI 1080
QL G LP GTVF+SVRD DK+ +V + + +LGFKI+AT GTA+FL G+ + +
Sbjct: 927 QLAAGNRLPTSGTVFLSVRDRDKEEVVELAKRLLELGFKILATSGTAKFLREAGIPVELV 986
Query: 1081 NKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGADAVF 1140
NKV EGRPHI D I N ++ LVINT G++AI D S+RRA L K+PY TT+AGA A
Sbjct: 987 NKVHEGRPHIVDLIKNGEIDLVINTPTGRQAIRDGFSIRRAALEYKVPYITTLAGARAAV 1046
Query: 1141 QAIQALKAGNLEVHSLQSY 1159
+AI+ALK G LEV SLQ Y
Sbjct: 1047 KAIEALKFGELEVRSLQEY 1065
>gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit.
In several thermophilic species (Methanobacterium
thermoautotrophicum, Methanococcus jannaschii, Aquifex
aeolicus), the large subunit appears split, at different
points, into two separate genes.
Length = 1050
Score = 1495 bits (3872), Expect = 0.0
Identities = 608/1144 (53%), Positives = 792/1144 (69%), Gaps = 96/1144 (8%)
Query: 2 PKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLA 61
PKR D+K +L+IG+GPIVIGQA EFDYSG+QACKALKEEGYR+ILVNSNPATIMTDP++A
Sbjct: 1 PKRTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMA 60
Query: 62 DATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPE 121
D Y EP+TPE V KIIEKERPDAILPT GGQTALN A+ L+ GVL++YGVE++G E
Sbjct: 61 DKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVE 120
Query: 122 TIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAA 181
I KAEDR LF +AM+ I P+S
Sbjct: 121 AIKKAEDRELFREAMKEIGEPVPES----------------------------------- 145
Query: 182 LYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEF 241
I H++ A+ A EIG P+I+RP+FTLGGTGGGIAYNR E
Sbjct: 146 ------------------EIAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREEL 187
Query: 242 LEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSI 301
EI E L ASP +VL+E+S+ GWKE E E+MRD NCI VC++EN DPMGVHTGDSI
Sbjct: 188 KEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMENFDPMGVHTGDSI 247
Query: 302 TVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSS 361
VAP+ TLTDKEYQ++R+A+I +++E+G+E GG NVQFA+NP +G+ VIE+NPRVSRSS
Sbjct: 248 VVAPSQTLTDKEYQMLRDASIKIIRELGIE-GGCNVQFALNPDSGRYYVIEVNPRVSRSS 306
Query: 362 ALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKFP 421
ALASKATG+PIAK+AAKLAVGY LDEL N +T G TPASFEPS+DY+V KIPR+ F+KF
Sbjct: 307 ALASKATGYPIAKVAAKLAVGYGLDELKNPVT-GTTPASFEPSLDYVVVKIPRWDFDKFA 365
Query: 422 GSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALRS 481
G D L T MKSVGEVMAIGRTF E+LQKALR LE G TG D + +E D D L
Sbjct: 366 GVDRKLGTQMKSVGEVMAIGRTFEEALQKALRSLEIGATGFD-LPDREVEPDED---LWR 421
Query: 482 AISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGL-PKDF 540
A+ P R+ +A+ALR GVSV+E H+ + ID WF+ +IK IVD+E + E L D
Sbjct: 422 ALKKPTDRRIFAIAEALRRGVSVDEIHELTKIDRWFLHKIKNIVDLEEELEEVKLTELDP 481
Query: 541 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600
+ L+ K +GFSDA+++ L G+ E+RK+R ++G+ PV+K VDTCA EF + T Y+YST
Sbjct: 482 ELLRRAKKLGFSDAQIARLIGVTEAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYST 541
Query: 601 YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC 660
YE + P +D+KK+++LG GPNRIGQG+EFDYCC HA +L+E G+ETIMIN
Sbjct: 542 YEGERDDVP-----FTDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINY 596
Query: 661 NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN 720
NPETVSTDYD +DRLYFE LT ED++ I+ +E+ + G+IVQFGGQTPL L+K LE+
Sbjct: 597 NPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPE----GVIVQFGGQTPLNLAKALEEA 652
Query: 721 QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPS 780
+PILGT P+SID AEDR++F +LL EL + QP+ + SVE A A EIG+P+L+RPS
Sbjct: 653 GVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIGYPVLVRPS 712
Query: 781 YVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL 840
YVLGGRAM+IVY+E L+ YL + + VS E HP+L D YL
Sbjct: 713 YVLGGRAMEIVYNEEELRRYLEEAVE--VSPE-------------------HPVLIDKYL 751
Query: 841 SDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKAL 900
DA+E+DVDA+ ++V++ GI+EHIEEAG+HSGDS C LP ++LS ++ D + + +
Sbjct: 752 EDAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKI 811
Query: 901 AGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960
A LNV GL+N+Q+A+KDG++Y++EVNPRASRTVPF++KA G P+ K+A R++ G+ L+
Sbjct: 812 AKELNVKGLMNIQFAVKDGEVYVIEVNPRASRTVPFVSKATGVPLIKLATRVMLGKKLEE 871
Query: 961 SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKS 1020
GK + K+ AVKE VF F+K GVD +LGPEM+STGEV+GI +D AF K+
Sbjct: 872 --LGVGKEKEP---KYVAVKEPVFSFSKLAGVDPVLGPEMKSTGEVMGIGRDLAEAFLKA 926
Query: 1021 QLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKI 1080
QL G +P +G+V +SVRD DK+ ++ + + + G+K+ ATEGTA+FL G++ + +
Sbjct: 927 QLSSGNRIPKKGSVLLSVRDKDKEELLDLARKLAEKGYKLYATEGTAKFLGEAGIKPELV 986
Query: 1081 NKVLEGRPHIEDAISNRQVHLVINTTE-GKKAIEDSKSLRRATLIRKIPYYTTIAGADAV 1139
KV EGRP+I D I N ++ LVINTT G D +RR L +P TT+ A+A
Sbjct: 987 LKVSEGRPNILDLIKNGEIELVINTTSKGAGTATDGYKIRREALDYGVPLITTLNTAEAF 1046
Query: 1140 FQAI 1143
+A+
Sbjct: 1047 AEAL 1050
>gnl|CDD|178336 PLN02735, PLN02735, carbamoyl-phosphate synthase.
Length = 1102
Score = 1428 bits (3698), Expect = 0.0
Identities = 622/1180 (52%), Positives = 812/1180 (68%), Gaps = 120/1180 (10%)
Query: 3 KRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLAD 62
KR DLK ++I+GAGPIVIGQACEFDYSGTQACKALKEEGY ++L+NSNPATIMTDP+ AD
Sbjct: 19 KRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETAD 78
Query: 63 ATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPET 122
TY P+TPE+V ++I KERPDA+LPT GGQTALN A++L G+L++YGVE+IGAK +
Sbjct: 79 RTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDA 138
Query: 123 IDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAAL 182
I KAEDR LF +AM+ I L TP S +A
Sbjct: 139 IKKAEDRELFKQAMEKIGLKTPPSGIAT-------------------------------- 166
Query: 183 YALELKWNLEENDRKHRYICHAMAVAVQALDEIG-LPLIIRPSFTLGGTGGGIAYNRSEF 241
L+E + ++IG PLIIRP+FTLGGTGGGIAYN+ EF
Sbjct: 167 -------TLDE--------------CFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEF 205
Query: 242 LEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSI 301
I + GL AS T++VL+E+S+LGWKEYELE+MRD+ N +++CSIEN+DPMGVHTGDSI
Sbjct: 206 ETICKAGLAASITSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSI 265
Query: 302 TVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSS 361
TVAPA TLTDKEYQ +R+ ++A+++EIGVE GG+NVQFAVNP +G++++IEMNPRVSRSS
Sbjct: 266 TVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSS 325
Query: 362 ALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKFP 421
ALASKATGFPIAK+AAKL+VGYTLD++ NDIT KTPASFEPSIDY+VTKIPRF FEKFP
Sbjct: 326 ALASKATGFPIAKMAAKLSVGYTLDQIPNDIT-LKTPASFEPSIDYVVTKIPRFAFEKFP 384
Query: 422 GSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALRS 481
GS LTT MKSVGE MA+GRTF ES QKALR LETG +G + ++ D + L+
Sbjct: 385 GSQPILTTQMKSVGEAMALGRTFQESFQKALRSLETGFSGWGCAKVKELDWDWE--QLKY 442
Query: 482 AISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPK-DF 540
+ +P PDR+ + A++ G++V+E H+ + IDPWF+ Q+K +VDVE ++ L +
Sbjct: 443 KLRVPNPDRIHAIYAAMKKGMTVDEIHELTFIDPWFLTQLKELVDVEQFLKSRSLSELSK 502
Query: 541 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600
+ +K GFSD +++ + E+R R +G+ P +K VDTCA EF + T YMYS+
Sbjct: 503 DDFYEVKRRGFSDKQIAFATKSTEKEVRSKRLSLGVTPSYKRVDTCAAEFEANTPYMYSS 562
Query: 601 YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC 660
Y+ E +++KK++ILGGGPNRIGQGIEFDYCCCHASF+L++AG+ETIM+N
Sbjct: 563 YDGE------CESAPTNKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNS 616
Query: 661 NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLS----KI 716
NPETVSTDYD +DRLYFE LT ED+L ++ +E+ GIIVQFGGQTPLKL+ K
Sbjct: 617 NPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPD----GIIVQFGGQTPLKLALPIQKY 672
Query: 717 LEKNQIP---------ILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLI 767
L+KN P I GT PDSID AEDR+RF +L EL + QP+ GI+ S A I
Sbjct: 673 LDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEADALAI 732
Query: 768 ACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINT 827
A IG+P+++RPSYVLGGRAM+IVYS++ L+ YL + V E
Sbjct: 733 AKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVE--VDPE--------------- 775
Query: 828 LLGTHPLLFDSYLSDAMEIDVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLS 886
P+L D YLSDA EIDVDAL ++ V++ GI+EHIE+AG+HSGDSACSLP++++
Sbjct: 776 ----RPVLVDKYLSDATEIDVDALADSEGNVVIGGIMEHIEQAGVHSGDSACSLPTQTIP 831
Query: 887 QQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRASRTVPFIAKAIGFPV 945
+ T LA LNV GL+N QYAI G++YI+E NPRASRTVPF++KAIG P+
Sbjct: 832 SSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPRASRTVPFVSKAIGHPL 891
Query: 946 AKVAARIIAGESLDASIAAYGKRPDLS-----QIKHFAVKESVFPFNKFPGVDILLGPEM 1000
AK A+ +++G+SL DL H +VKE+V PF+KF G D+LLGPEM
Sbjct: 892 AKYASLVMSGKSL----------KDLGFTEEVIPAHVSVKEAVLPFDKFQGCDVLLGPEM 941
Query: 1001 RSTGEVIGIDQDFPLAFAKSQLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKI 1060
RSTGEV+GID +F AFAK+Q+ G LP GTVF+S+ D K +VPI + F +LGF+I
Sbjct: 942 RSTGEVMGIDYEFSKAFAKAQIAAGQRLPLSGTVFISLNDLTKPHLVPIARGFLELGFRI 1001
Query: 1061 MATEGTARFLESHGLETQKINKVLEGRPHIEDAISNRQVHLVINTTEGKKA-IEDSKSLR 1119
++T GTA FLE G+ +++ K+ EGRPH D ++N Q+ L++ T+ G +D + LR
Sbjct: 1002 VSTSGTAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQLMVITSSGDALDQKDGRQLR 1061
Query: 1120 RATLIRKIPYYTTIAGADAVFQAIQALKAGNLEVHSLQSY 1159
R L K+P TT+AGA A QA+++LK +E+ +LQ +
Sbjct: 1062 RMALAYKVPIITTVAGALATAQAVKSLKECPIEMIALQDF 1101
Score = 225 bits (574), Expect = 8e-59
Identities = 143/435 (32%), Positives = 228/435 (52%), Gaps = 37/435 (8%)
Query: 599 STYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMI 658
+ T + K +D KKI+ILG GP IGQ EFDY A +LKE G+E ++I
Sbjct: 4 ADTVTRAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLI 63
Query: 659 NCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSK--- 715
N NP T+ TD + ADR Y +T E + +++ E+ ++ GGQT L L+
Sbjct: 64 NSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPD----ALLPTMGGQTALNLAVALA 119
Query: 716 ---ILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIG 772
ILEK + ++G + D+I AEDR+ F++ + ++ L P +GI+ +++ IA +IG
Sbjct: 120 ESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTLDECFEIAEDIG 179
Query: 773 -FPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGT 831
FPL+IRP++ LGG I Y N + ++ I Q +K +LLG
Sbjct: 180 EFPLIIRPAFTLGGTGGGIAY--NK--EEFETICKAGLAASITSQVLVEK-----SLLG- 229
Query: 832 HPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKD 891
+ Y + M D+ D V+++ IE+I+ G+H+GDS P+++L+ +
Sbjct: 230 ----WKEYELEVMR-DL-----ADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQ 279
Query: 892 ELISQTKALAGALNV-IGLINVQYAI--KDGKIYILEVNPRASRTVPFIAKAIGFPVAKV 948
L + A+ + V G NVQ+A+ DG++ I+E+NPR SR+ +KA GFP+AK+
Sbjct: 280 RLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAKM 339
Query: 949 AARIIAGESLDASIAAYGKRPDLS---QIKHFAVKESVFPFNKFPGVDILLGPEMRSTGE 1005
AA++ G +LD + S I + K F F KFPG +L +M+S GE
Sbjct: 340 AAKLSVGYTLDQIPNDITLKTPASFEPSIDYVVTKIPRFAFEKFPGSQPILTTQMKSVGE 399
Query: 1006 VIGIDQDFPLAFAKS 1020
+ + + F +F K+
Sbjct: 400 AMALGRTFQESFQKA 414
>gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed.
Length = 1068
Score = 1366 bits (3538), Expect = 0.0
Identities = 539/1163 (46%), Positives = 728/1163 (62%), Gaps = 100/1163 (8%)
Query: 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDL 60
MPK D++ +L+IG+GPIVIGQA EFDYSGTQAC ALKEEGY+++LVN NPATIMTDP
Sbjct: 1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAP 60
Query: 61 ADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKP 120
AD Y EP+T E V +II +E+PDA+L T GGQTALN A+ L G+L++YGVE++G
Sbjct: 61 ADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNI 120
Query: 121 ETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDA 180
E I K EDR F M+ + P+S E +
Sbjct: 121 EAIQKGEDRERFRALMKELGEPVPES-----------------------------EIVT- 150
Query: 181 ALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE 240
++EE A+ ++IG P+I+RP++TLGGTGGGIA N E
Sbjct: 151 ---------SVEE--------------ALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEE 187
Query: 241 FLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDS 300
++ + GL ASP + L+EES+ GWKE E E+MRD GNCI VC++EN+DP+G+HTGDS
Sbjct: 188 LEQLFKQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNGNCITVCNMENIDPVGIHTGDS 247
Query: 301 ITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS 360
I VAP+ TLTD EYQ++R+A++ ++ +GV GG N+QFA++PK+ + +IE+NPRVSRS
Sbjct: 248 IVVAPSQTLTDDEYQMLRSASLKIISALGV-VGGCNIQFALDPKSKQYYLIEVNPRVSRS 306
Query: 361 SALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKF 420
SALASKATG+PIAKIAAKLAVGYTL+EL N +T G T ASFEP++DY+V K PR+ F+KF
Sbjct: 307 SALASKATGYPIAKIAAKLAVGYTLNELKNPVT-GLTYASFEPALDYVVVKFPRWPFDKF 365
Query: 421 PGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALR 480
+D TL T MK+ GEVMAIGR F + QKALR LE GL +P S L
Sbjct: 366 GYADRTLGTQMKATGEVMAIGRNFESAFQKALRSLEIKRNGL---SLPIELSGKSDEELL 422
Query: 481 SAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDF 540
+ P RL + +ALR G++ EE H+ + IDP+F+Q+ + IV +E ++ E GL
Sbjct: 423 QDLRHPDDRRLFALLEALRRGITYEEIHELTKIDPFFLQKFEHIVALEKKLAEDGLDLSA 482
Query: 541 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600
L+ +K GFSDA L+ L+G+ E+R +R ++G+ P +K VDTCA EF + T Y YST
Sbjct: 483 DLLRKVKEKGFSDALLAELTGVTEEEVRALRKKLGIRPSYKMVDTCAAEFEAKTPYYYST 542
Query: 601 YETNFINKPVSEDKV---SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIM 657
Y E + S++KK++ILG GP RIGQGIEFDY HA+F+LK+ G+ETIM
Sbjct: 543 YFG--------ESEAEPSSEKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIM 594
Query: 658 INCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKIL 717
IN NPETVSTDYD ADRLYFE LT ED+L + E K G+IVQFGGQT + L+K L
Sbjct: 595 INNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIK----GVIVQFGGQTAINLAKGL 650
Query: 718 EKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLI 777
E+ + ILGT PD+ID EDRDRF +LL EL L + E A A IG+P+LI
Sbjct: 651 EEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRIGYPVLI 710
Query: 778 RPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFD 837
RPSYV+GG+ M +VY E L+ YL E Q +P+L D
Sbjct: 711 RPSYVIGGQGMAVVYDEPALEAYL---------AENASQ--------------LYPILID 747
Query: 838 SYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQT 897
++ D E +VDA+ + V + GIIEHIE+AG+HSGDS LP +SLS++ ++++
Sbjct: 748 QFI-DGKEYEVDAISDGEDVTIPGIIEHIEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYA 806
Query: 898 KALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGES 957
+A L G++N+Q+ + + +IY+LEVNPRASRTVPF++KA G P+AK+A +++ G+S
Sbjct: 807 IKIAKKLGFRGIMNIQFVLANDEIYVLEVNPRASRTVPFVSKATGVPLAKLATKVLLGKS 866
Query: 958 LDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAF 1017
L G P VK VF + K+PGVD LGPEM+STGEV+GID+D A
Sbjct: 867 LAELGYPNGLWPGSP---FIHVKMPVFSYLKYPGVDNTLGPEMKSTGEVMGIDKDLEEAL 923
Query: 1018 AKSQLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLET 1077
K + +P GT+F+SVRD DK + + + F +LGFK++ATEGTA +L G+ T
Sbjct: 924 YKGYEASDLHIPSYGTIFISVRDEDKPEVTKLARRFAQLGFKLLATEGTANWLAEEGITT 983
Query: 1078 QKINKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGAD 1137
+ KV EG P + + I ++ LV+NT+ A ED+ +R L IP +T + A
Sbjct: 984 GVVEKVQEGSPSLLERIKQHRIVLVVNTSLSDSASEDAIKIRDEALSTHIPVFTELETAQ 1043
Query: 1138 AVFQAIQALKAGNLEVHSLQSYR 1160
A Q +++L + LQ
Sbjct: 1044 AFLQVLESLALTTQPIQELQEKH 1066
>gnl|CDD|129084 smart00851, MGS, MGS-like domain. This domain composes the whole
protein of methylglyoxal synthetase and the domain is
also found in Carbamoyl phosphate synthetase (CPS) where
it forms a regulatory domain that binds to the allosteric
effector ornithine. This family also includes inosicase.
The known structures in this family show a common
phosphate binding site PUBMED:10526357.
Length = 90
Score = 104 bits (261), Expect = 2e-22
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 1045 RIVPIIQNFKKLGFKIMATEGTARFLESHGLE-TQKINKVLEGRPHIEDAISNRQVHLVI 1103
+V + + +LGF+++AT GTA+FL GL KV G I D I N ++ LVI
Sbjct: 1 GLVELAKRLAELGFELVATGGTAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVI 60
Query: 1104 NTTE--GKKAIEDSKSLRRATLIRKIPYYT 1131
NT G + ED K+LRRA IP T
Sbjct: 61 NTLYPLGAQPHEDGKALRRAAENIDIPGAT 90
>gnl|CDD|183732 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein;
Provisional.
Length = 326
Score = 67.6 bits (166), Expect = 2e-11
Identities = 63/293 (21%), Positives = 113/293 (38%), Gaps = 57/293 (19%)
Query: 683 EDILEILRVEQQKGELVGIIVQFGGQTPLKL-----SKILEKNQIPILGTQPDSIDLAED 737
+ +L+I + E+ + I L L + E ++ + + I++ D
Sbjct: 59 DRLLDICKKEKIDLLIPLI------DPELPLLAQNRDRFEEIGVKVLV-SSKEVIEICND 111
Query: 738 RDRFQKLLMELDLNQPRNGISHSVEH--ARLIACEIGFPLLIRPSYVLGGRAMQIVYSEN 795
+ + L E + P++ + S+E A L E+ FPL ++P + V +
Sbjct: 112 KWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKE 171
Query: 796 MLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQND 855
L+ L ++ E I+ Q E VD LC +
Sbjct: 172 ELEFLLEYVPNLIIQEFIEGQ----------------------------EYTVDVLCDLN 203
Query: 856 QVIVVGII--EHIEEAGIHSGDSACSLPSRSLSQQLKD-ELISQTKALAGALNVIGLINV 912
V+ I+ + IE + +G++ S+ ++ +KD EL + LA AL G +N+
Sbjct: 204 GE-VISIVPRKRIE---VRAGET-----SKGVT--VKDPELFKLAERLAEALGARGPLNI 252
Query: 913 QYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAY 965
Q + DG+ Y+ E+NPR P A G R + G + I Y
Sbjct: 253 QCFVTDGEPYLFEINPRFGGGYPLSYMA-GANEPDWIIRNLLGGENEPIIGEY 304
Score = 50.7 bits (122), Expect = 2e-06
Identities = 74/351 (21%), Positives = 127/351 (36%), Gaps = 95/351 (27%)
Query: 30 GTQACKALKEE--GYRIILVNSNP-ATIMTDPDLADATY-----TEPITPEVVAKIIEKE 81
Q KALK+ R+I + + A + AD Y T+P + + I +KE
Sbjct: 12 RVQLVKALKKSLLKGRVIGADISELAPALY---FADKFYVVPKVTDPNYIDRLLDICKKE 68
Query: 82 RPDAILPTTGGQTALNTALSL--KRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNI 139
+ D ++P + L L + + GV+++ + E I+ D+ L + ++
Sbjct: 69 KIDLLIPLI------DPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKEN 122
Query: 140 PLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHR 199
+ TPKS L S E+ AAL
Sbjct: 123 GIPTPKSYLPE-----------------------SLEDFKAAL----------------- 142
Query: 200 YICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE---FLEIVENGLHASPTTE 256
A E+ PL ++P G ++ E LE V N
Sbjct: 143 -----------AKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYVPN--------- 182
Query: 257 VLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQL 316
++I+E + G +EY ++++ D+ G I SI + V G++ +T+ D E
Sbjct: 183 LIIQEFIEG-QEYTVDVLCDLNGEVI---SIVPRKRIEVRAGETSK---GVTVKDPELFK 235
Query: 317 MRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKA 367
+ L G N+Q V +G+ + E+NPR L+ A
Sbjct: 236 LAERLAEALGARGP----LNIQCFVT--DGEPYLFEINPRFGGGYPLSYMA 280
>gnl|CDD|181524 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated.
Length = 499
Score = 60.8 bits (148), Expect = 2e-09
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 208 AVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTT----EVLIEESV 263
A + +EIG P+II+ S GG G + Y+ E + +E+ + + V IE+ +
Sbjct: 144 AKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYL 203
Query: 264 LGWKEYELEMMRDIKGNCIVV----CSI----ENLDPMGVHTGDSITVAPALTLTDKEYQ 315
+ E++++ D GN I + CSI + L I AP+ +T + +
Sbjct: 204 EKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKL----------IEEAPSPIMTPELRE 253
Query: 316 LMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKI 375
M AA+ K I E+ G V+F + NG +EMN R+ + TG I K
Sbjct: 254 RMGEAAVKAAKAINYENAGT-VEFLYS--NGNFYFLEMNTRLQVEHPITEMVTGIDIVKE 310
Query: 376 AAKLAVGYTLDELGNDIT 393
K+A G L DIT
Sbjct: 311 QIKIAAGEELSFKQEDIT 328
Score = 49.2 bits (118), Expect = 6e-06
Identities = 67/262 (25%), Positives = 105/262 (40%), Gaps = 44/262 (16%)
Query: 712 KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELD---LNQPRNGISHSVEHARLIA 768
+ +K EK I +G D I+ + +KL+ + L GI +E A+ IA
Sbjct: 90 EFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIE-DIEEAKEIA 148
Query: 769 CEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTL 828
EIG+P++I+ S GG M++VYSE L+D + T + I + D T I
Sbjct: 149 EEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIEST------QSIAQSAFGDSTVFI--- 199
Query: 829 LGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSL-------- 880
+ YL I++ L + IH GD CS+
Sbjct: 200 --------EKYLEKPRHIEIQILADKHGNV------------IHLGDRECSIQRRHQKLI 239
Query: 881 ---PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFI 937
PS ++ +L++ + A A+N V++ +G Y LE+N R P
Sbjct: 240 EEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNFYFLEMNTRLQVEHPIT 299
Query: 938 AKAIGFPVAKVAARIIAGESLD 959
G + K +I AGE L
Sbjct: 300 EMVTGIDIVKEQIKIAAGEELS 321
>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a
role in gluconeogensis but not glycolysis.
Length = 1143
Score = 58.7 bits (142), Expect = 9e-09
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 20/191 (10%)
Query: 205 MAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE------FLEIVENGLHASPTTEVL 258
M + IG P+II+ S+ GG G G+ RSE F A EV
Sbjct: 141 MEEVLDFAAAIGYPVIIKASW--GGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVY 198
Query: 259 IEESVLGWKEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEY 314
+E+ + + E++++ D GN + + CS++ + VAPA L+ +
Sbjct: 199 VEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQR------RHQKVVEVAPAPYLSREVR 252
Query: 315 QLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAK 374
+ A+ + K + + G V+F V+ +GK IE+NPR+ + + TG I +
Sbjct: 253 DEIAEYAVKLAKAVNYINAGT-VEFLVD-NDGKFYFIEVNPRIQVEHTVTEEITGIDIVQ 310
Query: 375 IAAKLAVGYTL 385
+A G +L
Sbjct: 311 AQIHIADGASL 321
Score = 56.0 bits (135), Expect = 5e-08
Identities = 57/275 (20%), Positives = 104/275 (37%), Gaps = 47/275 (17%)
Query: 718 EKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQP----RNGISHSVEHARLIACEIGF 773
K I +G + + +D D+ + L ++ P +G ++E A IG+
Sbjct: 96 NKAGIIFIGPKAEVMDQLGDKVAARNLAIKA--GVPVVPGTDGPPETMEEVLDFAAAIGY 153
Query: 774 PLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHP 833
P++I+ S+ GGR M++V SE ++ + K+ + G
Sbjct: 154 PVIIKASWGGGGRGMRVVRSE----------------ADVADAFQRAKS-EAKAAFGNDE 196
Query: 834 LLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSL-----------PS 882
+ + + I+V L +V H + CS+ P+
Sbjct: 197 VYVEKLIERPRHIEVQLLGDKHGNVV------------HLFERDCSVQRRHQKVVEVAPA 244
Query: 883 RSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRASRTVPFIAKAI 941
LS++++DE+ LA A+N I V++ + DGK Y +EVNPR +
Sbjct: 245 PYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVEHTVTEEIT 304
Query: 942 GFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKH 976
G + + I G SL + D+ +
Sbjct: 305 GIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGY 339
>gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated.
Length = 447
Score = 55.5 bits (134), Expect = 8e-08
Identities = 57/266 (21%), Positives = 111/266 (41%), Gaps = 47/266 (17%)
Query: 712 KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQP----RNGISHSVEHARLI 767
K +K+ ++ I +G ++I+L ++ ++++++ + P G + E A I
Sbjct: 90 KFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGV--PVVPGSEGEIENEEEALEI 147
Query: 768 ACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINT 827
A EIG+P++++ S GGR ++IV SE EE+ + + K+ +
Sbjct: 148 AKEIGYPVMVKASAGGGGRGIRIVRSE----------------EELIKAFNTAKS-EAKA 190
Query: 828 LLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSL------- 880
G + + ++ + I+ L N +V H G+ CSL
Sbjct: 191 AFGDDSMYIEKFIENPKHIEFQILGDNYGNVV------------HLGERDCSLQRRNQKV 238
Query: 881 ----PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRASRTVP 935
PS ++++L+ ++ A A+N +++ + KDG Y +E+N R P
Sbjct: 239 LEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHP 298
Query: 936 FIAKAIGFPVAKVAARIIAGESLDAS 961
G + K +I GE L
Sbjct: 299 ITEMITGVDLVKEQIKIAYGEKLSIK 324
Score = 48.6 bits (116), Expect = 1e-05
Identities = 43/193 (22%), Positives = 83/193 (43%), Gaps = 16/193 (8%)
Query: 208 AVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTT----EVLIEESV 263
A++ EIG P++++ S GG G I + E ++ + + IE+ +
Sbjct: 144 ALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFI 203
Query: 264 LGWKEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRN 319
K E +++ D GN + + CS++ + AP+ +T++ + M
Sbjct: 204 ENPKHIEFQILGDNYGNVVHLGERDCSLQR------RNQKVLEEAPSPVMTEELRKKMGE 257
Query: 320 AAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKL 379
A+ K + ++ G ++F ++ K+G +EMN R+ + TG + K K+
Sbjct: 258 IAVKAAKAVNYKNAG-TIEFLLD-KDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKI 315
Query: 380 AVGYTLDELGNDI 392
A G L DI
Sbjct: 316 AYGEKLSIKQEDI 328
>gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase
subunit; Provisional.
Length = 467
Score = 52.8 bits (127), Expect = 5e-07
Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 43/217 (19%)
Query: 756 GISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKR 815
G+ S++ A +A IG+PL+I+ + GGR +++ + ++
Sbjct: 139 GVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDA----------------AQLAA 182
Query: 816 QYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGD 875
+ P + + G + + +++ A I+V L ++V +H +
Sbjct: 183 ELPLAQR-EAQAAFGDGGVYLERFIARARHIEVQILGDGERV-------------VHLFE 228
Query: 876 SACSL-----------PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKD--GKIY 922
CSL PS SL+ +D L + LA + G ++Y D G+ Y
Sbjct: 229 RECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFY 288
Query: 923 ILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLD 959
+E+N R P G + + RI GE L
Sbjct: 289 FIEMNTRIQVEHPVTEAITGIDLVQEMLRIADGEPLR 325
>gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated.
Length = 472
Score = 52.4 bits (126), Expect = 8e-07
Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 20/195 (10%)
Query: 208 AVQALDEIGLPLIIRPSFTLGGTGGGI------AYNRSEFLEIVENGLHASPTTEVLIEE 261
A+ + IG P++++ T GG G GI F ++ A + EV +E+
Sbjct: 143 ALAEAERIGYPVMLKA--TSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEK 200
Query: 262 SVLGWKEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLM 317
++ K E++++ D GN + + CSI+ I +AP+ LT ++ +
Sbjct: 201 CIVNPKHIEVQILADSHGNVVHLFERDCSIQR------RNQKLIEIAPSPQLTPEQRAYI 254
Query: 318 RNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAA 377
+ A+ K +G E+ G V+F ++ +G++ +EMN RV + + TG I +
Sbjct: 255 GDLAVRAAKAVGYENAG-TVEFLLD-ADGEVYFMEMNTRVQVEHTITEEITGIDIVREQI 312
Query: 378 KLAVGYTLDELGNDI 392
++A G L DI
Sbjct: 313 RIASGLPLSYKQEDI 327
>gnl|CDD|183835 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
Length = 1146
Score = 49.0 bits (118), Expect = 8e-06
Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 54/215 (25%)
Query: 205 MAVAVQALDEIGLPLIIRPSFTLGGTGGG--IAYNRSEFLEIVE-----------NGLHA 251
+ A++ +EIG P++++ S GG G G I + E E E N
Sbjct: 145 IEEALEFAEEIGYPIMLKAS--AGGGGRGMRIVRSEEELEEAFERAKREAKAAFGND--- 199
Query: 252 SPTTEVLIEESVLGWKEYELEMMRDIKGNCIVV------CS--------IENLDPMGVHT 297
EV +E+ V + E++++ D GN VV CS +E
Sbjct: 200 ----EVYLEKYVENPRHIEVQILGDKHGN--VVHLYERDCSVQRRHQKVVE--------- 244
Query: 298 GDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRV 357
+APA L+++ + + AA+ + + +G + G V+F V+ +G IE+NPR+
Sbjct: 245 -----IAPAPGLSEELRERICEAAVKLARAVGYVNAGT-VEFLVDA-DGNFYFIEVNPRI 297
Query: 358 SRSSALASKATGFPIAKIAAKLAVGYTLDELGNDI 392
+ + TG I + +A G TL +L I
Sbjct: 298 QVEHTVTEEVTGIDIVQSQILIAEGATLHDLEIGI 332
Score = 38.2 bits (90), Expect = 0.012
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 758 SHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQD 799
+E A A EIG+P++++ S GGR M+IV SE L++
Sbjct: 142 IDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEE 183
Score = 30.9 bits (71), Expect = 2.0
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 881 PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPR 929
P+ LS++L++ + LA A+ + V++ + DG Y +EVNPR
Sbjct: 247 PAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPR 296
>gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase
subunit. This model represents the biotin carboxylase
subunit found usually as a component of acetyl-CoA
carboxylase. Acetyl-CoA carboxylase is designated EC
6.4.1.2 and this component, biotin carboxylase, has its
own designation, EC 6.3.4.14. Homologous domains are
found in eukaryotic forms of acetyl-CoA carboxylase and
in a number of other carboxylases (e.g. pyruvate
carboxylase), but seed members and trusted cutoff are
selected so as to exclude these. In some systems, the
biotin carboxyl carrier protein and this protein (biotin
carboxylase) may be shared by different
carboxyltransferases. However, this model is not
intended to identify the biotin carboxylase domain of
propionyl-coA carboxylase. The model should hit the full
length of proteins, except for chloroplast transit
peptides in plants. If it hits a domain only of a longer
protein, there may be a problem with the identification.
Length = 449
Score = 47.4 bits (113), Expect = 2e-05
Identities = 54/263 (20%), Positives = 103/263 (39%), Gaps = 47/263 (17%)
Query: 712 KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQP----RNGISHSVEHARLI 767
++ E++ +G +SI L D+ + + + + P +G+ E I
Sbjct: 90 NFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGV--PCVPGSDGLVEDEEENVRI 147
Query: 768 ACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINT 827
A IG+P++I+ + GGR M++V + L + T E K + ND
Sbjct: 148 AKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMT-----RAEAKAAFGNDG------ 196
Query: 828 LLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSL------- 880
+ + Y+ + +++ L I+ G+ CS+
Sbjct: 197 ------VYIEKYIENPRHVEIQVLADK------------YGNAIYLGERDCSIQRRHQKL 238
Query: 881 ----PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRASRTVP 935
PS +L+ +L+ ++ A ++ G V++ + K+G+ Y +E+N R P
Sbjct: 239 LEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVEHP 298
Query: 936 FIAKAIGFPVAKVAARIIAGESL 958
G + K RI AGE L
Sbjct: 299 VTEMITGVDLIKEQIRIAAGEPL 321
Score = 41.3 bits (97), Expect = 0.001
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 16/189 (8%)
Query: 205 MAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVE----NGLHASPTTEVLIE 260
V+ IG P+II+ + GG G + E ++ + A V IE
Sbjct: 141 EEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIE 200
Query: 261 ESVLGWKEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQL 316
+ + + E++++ D GN I + CSI+ + +PALT +
Sbjct: 201 KYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLEE----APSPALTPELRRK-- 254
Query: 317 MRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIA 376
M +AA+ IG G V+F ++ KNG+ +EMN R+ + TG + K
Sbjct: 255 MGDAAVKAAVSIGYRGAG-TVEFLLD-KNGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQ 312
Query: 377 AKLAVGYTL 385
++A G L
Sbjct: 313 IRIAAGEPL 321
>gnl|CDD|162031 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family. This
family, related to bacterial glutathione synthetases,
contains at least two different alpha-L-glutamate
ligases. One is RimK, as in E. coli, which adds
additional Glu residues to the native Glu-Glu C-terminus
of ribosomal protein S6, but not to Lys-Glu mutants.
Most species with a member of this subfamily lack an S6
homolog ending in Glu-Glu, however. Members in
Methanococcus jannaschii act instead as a
tetrahydromethanopterin:alpha-l-glutamate ligase
(MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase
(MJ1001).
Length = 277
Score = 44.6 bits (106), Expect = 1e-04
Identities = 58/276 (21%), Positives = 101/276 (36%), Gaps = 43/276 (15%)
Query: 669 YDIAD---RLYFESLTEEDIL--------EILRVEQQKGEL----VGIIVQFGGQTPLKL 713
YD ++ E+ E I L + EL V I+ L +
Sbjct: 6 YDRIRLDEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAV 65
Query: 714 SKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGF 773
++ LE +P++ D+I A D+ +LL + L QPR G++ S E A + EIGF
Sbjct: 66 ARYLESLGVPVI-NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIGF 124
Query: 774 PLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHP 833
P++++P + GR + + + + L E Q
Sbjct: 125 PVVLKPVFGSWGRLVSLARDKQAAETLL----------EHFEQLNGP--------QNLF- 165
Query: 834 LLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSR-SLSQQLKDE 892
Y+ D+ D+VI I I + + L++++++
Sbjct: 166 -YVQEYIKKPGGRDIRVFVVGDEVI--AAIYRITSGHWRTNLARGGKAEPCPLTEEIEEL 222
Query: 893 LISQTKALAGALNVIGLINVQYAIKDGKIYILEVNP 928
I KAL + I L+ +D + + EVNP
Sbjct: 223 AIKAAKALGLDVVGIDLLES----EDRGLLVNEVNP 254
>gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated.
Length = 478
Score = 43.6 bits (103), Expect = 3e-04
Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 24/190 (12%)
Query: 215 IGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASP--------TTEVLIEESVLGW 266
IG P+I++ S GG G GI E E +EN + EV +E+ V+
Sbjct: 151 IGYPVILKASG--GGGGRGIRVVHKE--EDLENAFESCKREALAYFNNDEVFMEKYVVNP 206
Query: 267 KEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAI 322
+ E +++ D GN I + CSI+ I +AP +++D + M A+
Sbjct: 207 RHIEFQILGDNYGNIIHLCERDCSIQR------RHQKVIEIAPCPSISDNLRKTMGVTAV 260
Query: 323 AVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVG 382
A K +G + G ++F ++ N + +EMN R+ + + TG + ++A G
Sbjct: 261 AAAKAVGYTNAG-TIEFLLDDYN-RFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAG 318
Query: 383 YTLDELGNDI 392
LD +DI
Sbjct: 319 EILDLEQSDI 328
Score = 34.4 bits (79), Expect = 0.17
Identities = 57/262 (21%), Positives = 100/262 (38%), Gaps = 76/262 (29%)
Query: 715 KILEKNQIPIL-GTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGF 773
+++KN IPI+ GT+ LN S S+E ++ A +IG+
Sbjct: 120 YLMKKNGIPIVPGTEK--------------------LN------SESMEEIKIFARKIGY 153
Query: 774 PLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQ----YPNDKTGQINTLL 829
P++++ S GGR +++V+ E L++ E KR+ + ND+
Sbjct: 154 PVILKASGGGGGRGIRVVHKEEDLENAF---------ESCKREALAYFNNDE-------- 196
Query: 830 GTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSL--------- 880
+ + Y+ + I+ L N I IH + CS+
Sbjct: 197 ----VFMEKYVVNPRHIEFQILGDNYGNI------------IHLCERDCSIQRRHQKVIE 240
Query: 881 --PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKD-GKIYILEVNPRASRTVPFI 937
P S+S L+ + A A A+ +++ + D + Y +E+N R
Sbjct: 241 IAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEHGVT 300
Query: 938 AKAIGFPVAKVAARIIAGESLD 959
+ G + RI AGE LD
Sbjct: 301 EEITGIDLIVRQIRIAAGEILD 322
>gnl|CDD|179152 PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase; Provisional.
Length = 513
Score = 42.4 bits (101), Expect = 7e-04
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 1036 VSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKV------LEGR 1087
+SV +DK IV + +LG +I++T GTA+ L G+ +++ V L+GR
Sbjct: 9 ISV--SDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDVTGFPEILDGR 64
>gnl|CDD|181436 PRK08462, PRK08462, biotin carboxylase; Validated.
Length = 445
Score = 41.3 bits (97), Expect = 0.002
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 16/181 (8%)
Query: 213 DEIGLPLIIRPSFTLGGTGGGIAYNRSE----FLEIVENGLHASPTTEVLIEESVLGWKE 268
EIG P+I++ + GG G + + S+ +L L A + +E+ + +
Sbjct: 151 KEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRH 210
Query: 269 YELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAV 324
E++++ D GN I V CS++ I +PA+ L +K + + AI
Sbjct: 211 IEVQILGDKHGNVIHVGERDCSLQR------RHQKLIEESPAVVLDEKTRERLHETAIKA 264
Query: 325 LKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYT 384
K IG E G +F ++ N +EMN R+ ++ +G + + K+A G
Sbjct: 265 AKAIGYEGAG-TFEFLLD-SNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEE 322
Query: 385 L 385
L
Sbjct: 323 L 323
Score = 39.0 bits (91), Expect = 0.007
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 715 KILEKNQIPILGTQPDSIDLAEDRDRFQKLLME--LDLNQPRNGISHSVEHARLIACEIG 772
+I + I +G + + L D+ + ++++ + + +G S E A+ IA EIG
Sbjct: 95 EICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIG 154
Query: 773 FPLLIRPSYVLGGRAMQIVYSENMLQ 798
+P++++ + GGR M++V E+ L+
Sbjct: 155 YPVILKAAAGGGGRGMRVVEDESDLE 180
>gnl|CDD|167327 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 41.0 bits (96), Expect = 0.002
Identities = 65/325 (20%), Positives = 117/325 (36%), Gaps = 37/325 (11%)
Query: 188 KWNLEENDRKH------RYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEF 241
K L R H + AVA+ ALD + P++++P G G + + +E
Sbjct: 108 KKRLARTLRDHGIDVPRTHALALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEA 167
Query: 242 LEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSI 301
A T L++ V G EY +E + +G+ ++ + ++L P H +
Sbjct: 168 AAHCAALRRAG-TRAALVQAYVEG-DEYSVETLTVARGHQVLGITRKHLGPPP-HFVEIG 224
Query: 302 TVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS- 360
PA + +++R A L +G G A+ + V + +V+IE+NPR++
Sbjct: 225 HDFPAPLSAPQRERIVRTVLRA-LDAVGYAFGPAHTELRV--RGDTVVIIEINPRLAGGM 281
Query: 361 -SALASKATGFPIAKIAAKL----------------AVGYTLDELGNDITGGKTPASFEP 403
L +A G + L A+ + L + G F P
Sbjct: 282 IPVLLEEAFGVDLLDHVIDLHLGVAAFADPTAKRYGAIRFVLPARSGVLRG----LLFLP 337
Query: 404 SIDYIVTKIPRFTFEKFPGSDVTLTTSMKS-VGEVMAIGRTFAESLQKALRGLETGLTGL 462
++ RF K PG + L + + V+ G A R + +
Sbjct: 338 DDIAARPEL-RFHPLKQPGDALRLEGDFRDRIAAVVCAGDHRDSVAAAAERAVAGLSIDI 396
Query: 463 DEIHIPSMESDNDPNALRSAISIPC 487
+ + +D A R + P
Sbjct: 397 GDAARAAALNDAGAGAARPGLP-PE 420
Score = 32.9 bits (75), Expect = 0.53
Identities = 54/308 (17%), Positives = 103/308 (33%), Gaps = 59/308 (19%)
Query: 726 GTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGG 785
++I D+ R + L + ++ PR A + +P++++P G
Sbjct: 96 AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGLTYPVVVKPRMGSGS 155
Query: 786 RAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAME 845
+++ S ++R GT L +Y+ + E
Sbjct: 156 VGVRLCASV----AEAAAH-----CAALRR-------------AGTRAALVQAYV-EGDE 192
Query: 846 IDVDALCQNDQVIVVGIIE-------HIEEAGIHSGDSACSLPSRSLSQQLKDELISQTK 898
V+ L V+GI H E G H + S P R + ++
Sbjct: 193 YSVETLTVARGHQVLGITRKHLGPPPHFVEIG-HDFPAPLSAPQR-------ERIVRTVL 244
Query: 899 ALAGALNVIGL----INVQYAIKDGKIYILEVNPR-ASRTVP-FIAKAIGFPVAKVAARI 952
AL+ +G + + ++ + I+E+NPR A +P + +A G + +
Sbjct: 245 ---RALDAVGYAFGPAHTELRVRGDTVVIIEINPRLAGGMIPVLLEEAFGVDLLDHVIDL 301
Query: 953 IAGESLDASIAAYGKRPDLSQIKHFAV--KESVFPFNKFPGVDILLGPEMR-----STGE 1005
G + A F + + V F DI PE+R G+
Sbjct: 302 HLGVAAFA-----DPTAKRYGAIRFVLPARSGVLRGLLFLPDDIAARPELRFHPLKQPGD 356
Query: 1006 VIGIDQDF 1013
+ ++ DF
Sbjct: 357 ALRLEGDF 364
>gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 450
Score = 40.4 bits (95), Expect = 0.003
Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 41/211 (19%)
Query: 760 SVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPN 819
E A IA +IG+P++++ S GG MQ+V +E L + +
Sbjct: 140 DAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAF-----ESNKKRAANFF-- 192
Query: 820 DKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACS 879
G + + Y+ D I++ L + ++ + CS
Sbjct: 193 ----------GNGEMYIEKYIEDPRHIEIQLLADTH--------GNT----VYLWERECS 230
Query: 880 L-----------PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGK-IYILEVN 927
+ PS L ++ + + + A A+ +++ + + K Y LE+N
Sbjct: 231 VQRRHQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMN 290
Query: 928 PRASRTVPFIAKAIGFPVAKVAARIIAGESL 958
R P + G + + RI AGE L
Sbjct: 291 TRLQVEHPVTEEITGIDLVEQQLRIAAGEKL 321
Score = 38.5 bits (90), Expect = 0.011
Identities = 62/278 (22%), Positives = 113/278 (40%), Gaps = 43/278 (15%)
Query: 208 AVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVE-NGLHASP---TTEVLIEESV 263
A+ +IG P++++ S GG G + E + E N A+ E+ IE+ +
Sbjct: 144 AIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYI 203
Query: 264 LGWKEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRN 319
+ E++++ D GN + + CS++ I AP+ L ++ + M
Sbjct: 204 EDPRHIEIQLLADTHGNTVYLWERECSVQR------RHQKVIEEAPSPFLDEETRKAMGE 257
Query: 320 AAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKL 379
A+ K IG + G ++F V+ + +EMN R+ + + TG + + ++
Sbjct: 258 RAVQAAKAIGYTNAG-TIEFLVD-EQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRI 315
Query: 380 AVGYTLDELGNDITG----------GKTPASFEPSIDYIVTKIPRFTFEKFPG------- 422
A G L +DI + P +F PS KI T G
Sbjct: 316 AAGEKLSFTQDDIKRSGHAIEVRIYAEDPKTFFPS----PGKITDLTLPGGEGVRHDHAV 371
Query: 423 -SDVTLTT---SMKSVGEVMAIGRTFAESLQKALRGLE 456
+ VT+T M + +++A G T E++ + LE
Sbjct: 372 ENGVTVTPFYDPM--IAKLIAHGETREEAISRLHDALE 407
>gnl|CDD|181492 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase
subunit; Validated.
Length = 451
Score = 39.4 bits (93), Expect = 0.006
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 716 ILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQP----RNGISHSVEHARLIACEI 771
I E + +G ++I L D+ + + + + P +G E A IA EI
Sbjct: 94 ICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGV--PVVPGSDGPVDDEEEALAIAKEI 151
Query: 772 GFPLLIRPSYVLGGRAMQIVYSE 794
G+P++I+ + GGR M++V +E
Sbjct: 152 GYPVIIKATAGGGGRGMRVVRTE 174
Score = 33.2 bits (77), Expect = 0.35
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 56/180 (31%)
Query: 204 AMAVAVQALDEIGLPLIIRPSFTLGGTGGGI--AYNRSEFLEIVE-----------NGLH 250
A+A+A EIG P+II+ T GG G G+ +E + N
Sbjct: 144 ALAIA----KEIGYPVIIKA--TAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNP-- 195
Query: 251 ASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVV----CSI---------ENLDPMGVHT 297
V +E+ + + E++++ D GN I + CS+ E
Sbjct: 196 -----GVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLEE--------- 241
Query: 298 GDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRV 357
AP+ +T++ + + AA+ K IG G ++F KNG+ IEMN R+
Sbjct: 242 ------APSPAITEELRRKIGEAAVKAAKAIGYRGAG-TIEFLYE-KNGEFYFIEMNTRI 293
>gnl|CDD|162983 TIGR02712, urea_carbox, urea carboxylase. Members of this family
are ATP-dependent urea carboxylase, including
characterized members from Oleomonas sagaranensis (alpha
class Proteobacterium) and yeasts such as Saccharomyces
cerevisiae. The allophanate hydrolase domain of the
yeast enzyme is not included in this model and is
represented by an adjacent gene in Oleomonas
sagaranensis. The fusion of urea carboxylase and
allophanate hydrolase is designated urea amidolyase. The
enzyme from Oleomonas sagaranensis was shown to be
highly active on acetamide and formamide as well as
urea.
Length = 1201
Score = 37.7 bits (88), Expect = 0.018
Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 54/196 (27%)
Query: 753 PRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEE 812
P G+ S++ A A EIG+P++++ + GG MQ S L + E
Sbjct: 131 PGTGLLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAF---------ET 181
Query: 813 IKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVI------VVGIIEHI 866
+KR G+ G + + ++ +A ++V Q+ VV +
Sbjct: 182 VKRL------GESF--FGDAGVFLERFVENARHVEV-------QIFGDGKGKVVAL---- 222
Query: 867 EEAGIHSGDSACSL-----------PSRSLSQQLKDELISQTKALAGALNVIGLINVQ-- 913
G+ CSL P+ +L + + L++ + L A+N V+
Sbjct: 223 -------GERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFI 275
Query: 914 YAIKDGKIYILEVNPR 929
Y + Y LEVN R
Sbjct: 276 YDEARDEFYFLEVNTR 291
Score = 34.2 bits (79), Expect = 0.21
Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 15/157 (9%)
Query: 208 AVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPT----TEVLIEESV 263
A++A EIG P++++ + GG G + +E E E + V +E V
Sbjct: 142 ALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFV 201
Query: 264 LGWKEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRN 319
+ E+++ D KG + + CS++ + V PA L + Q +
Sbjct: 202 ENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEE------TPAPNLPPETRQALLA 255
Query: 320 AAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPR 356
AA + + + S G V+F + + +E+N R
Sbjct: 256 AAERLGEAVNYRSAGT-VEFIYDEARDEFYFLEVNTR 291
>gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional.
Length = 727
Score = 37.4 bits (88), Expect = 0.024
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 733 DLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSY 781
D+A D++ ++LL + P + S E A A EIG+P++++P
Sbjct: 210 DIACDKELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEIGYPVVVKPLD 258
>gnl|CDD|161835 TIGR00355, purH, phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase. Involved in purine
ribonucleotide biosynthesis. The IMP cyclohydrolase
activity is in the N-terminal region.
Length = 511
Score = 36.0 bits (83), Expect = 0.061
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1042 DKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEGRPHIED 1092
DK IV Q + G ++++T GTA+ L G+ +++ G P + D
Sbjct: 9 DKTGIVEFAQGLVERGVELLSTGGTAKLLAEAGVPVTEVSDY-TGFPEMMD 58
>gnl|CDD|173033 PRK14569, PRK14569, D-alanyl-alanine synthetase A; Provisional.
Length = 296
Score = 35.4 bits (81), Expect = 0.092
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 211 ALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGL-HASPTTEVLIEESVLGWKEY 269
A DEI P+ ++PS G IA + + ++ +++ AS EV+IE+ V G KE
Sbjct: 125 AEDEISFPVAVKPS----SGGSSIATFKVKSIQELKHAYEEASKYGEVMIEQWVTG-KEI 179
Query: 270 ELEMMR-DIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEI 328
+ ++ ++ + + E D ++G SI +P+ KE ++ R A +
Sbjct: 180 TVAIVNDEVYSSVWIEPQNEFYDYESKYSGKSIYHSPSGLCEQKELEV-RQLAKKAYDLL 238
Query: 329 GVESGGANVQFAVNPKNGKMVVIEMN 354
G SG A V F + + G ++E+N
Sbjct: 239 GC-SGHARVDFIYDDR-GNFYIMEIN 262
>gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX. The family
of proteins found in this equivalog include the
characterized LysX from Thermus thermophilus which is
part of a well-organized lysine biosynthesis gene
cluster. LysX is believed to carry out an ATP-dependent
acylation of the amino group of alpha-aminoadipate in
the prokaryotic version of the fungal AAA lysine
biosynthesis pathway. No species having a sequence in
this equivalog contains the elements of the more common
diaminopimelate lysine biosythesis pathway, and none has
been shown to be a lysine auxotroph. These sequences
have mainly recieved the name of the related enzyme,
"ribosomal protein S6 modification protein RimK". RimK
has been characterized in E. coli, and acts by
ATP-dependent condensation of S6 with glutamate
residues.
Length = 280
Score = 34.3 bits (79), Expect = 0.19
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 699 VGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGIS 758
V II L +++LE +P++ I+ D+ L + + PR ++
Sbjct: 50 VAIIRCVSQSRALYSARLLEALGVPVI-NSSHVIEACGDKIFTYLKLAKAGVPTPRTYLA 108
Query: 759 HSVEHARLIACEIGFPLLIRP 779
E A +A +G+P++++P
Sbjct: 109 FDREAALKLAEALGYPVVLKP 129
>gnl|CDD|161937 TIGR00577, fpg, formamidopyrimidine-DNA glycosylase (fpg). All
proteins in the FPG family with known functions are
FAPY-DNA glycosylases that function in base excision
repair. Homologous to endonuclease VIII (nei). This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University).
Length = 272
Score = 33.4 bits (77), Expect = 0.30
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 305 PALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPK--NGKM 348
A +L+ +E +L+ A VL++ +E GG ++ N NG
Sbjct: 190 LANSLSKEECELLHRAIKEVLRK-AIEMGGTTIRDYSNSDGHNGYF 234
>gnl|CDD|100572 PRK00478, scpA, segregation and condensation protein A/unknown
domain fusion protein; Provisional.
Length = 505
Score = 33.4 bits (76), Expect = 0.39
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 673 DRLYFESLTEEDI-LEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQIPI 724
++L ++LT ++I +E L +EQ + E++ II QF + L ++L K I
Sbjct: 325 EKLKIKTLTNKNIVIEELSIEQVQNEILSIIKQFLYNQ-VSLKRVLLKINHKI 376
>gnl|CDD|178479 PLN02891, PLN02891, IMP cyclohydrolase.
Length = 547
Score = 33.2 bits (76), Expect = 0.45
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 1041 ADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKV------LEGR-----PH 1089
+DK + + ++LG+ I++T GTA LE+ G+ K+ ++ L+GR P
Sbjct: 30 SDKTDLALLANGLQELGYTIVSTGGTASALEAAGVSVTKVEELTNFPEMLDGRVKTLHPA 89
Query: 1090 IEDAISNRQ 1098
+ I R+
Sbjct: 90 VHGGILARR 98
>gnl|CDD|182468 PRK10446, PRK10446, ribosomal protein S6 modification protein;
Provisional.
Length = 300
Score = 32.6 bits (74), Expect = 0.58
Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 47/237 (19%)
Query: 721 QIPILGTQP--DSIDLAEDRDRFQ--KLLMELDLNQPRNGISHSVEH-ARLIACEIGFPL 775
Q +LG+ P +S+ +A RD+ + +LL ++ P GI+HS + + LI G PL
Sbjct: 79 QFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPL 138
Query: 776 LIRPSYVLGGRAMQIVYSEN-MLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPL 834
+++ V G + + +V +E + ++D GL + +
Sbjct: 139 VVK--LVEGTQGIGVVLAETRQAAESVIDAFRGLNAH----------------------I 174
Query: 835 LFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAG-----IHSGDSACSLPSRSLSQQL 889
L Y+ +A D+ L D+ VV IE + G +H G +A S++ Q
Sbjct: 175 LVQEYIKEAQGCDIRCLVVGDE--VVAAIERRAKEGDFRSNLHRGGAASVA---SITPQE 229
Query: 890 KDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVA 946
++ I + + AL+V G +++ A G + ++EVN AS + I K G +A
Sbjct: 230 REIAIKAARTM--ALDVAG-VDILRA-NRGPL-VMEVN--ASPGLEGIEKTTGIDIA 279
>gnl|CDD|162248 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase. but a
number of antibiotic resistance proteins score above the
trusted cutoff of this model.
Length = 315
Score = 32.6 bits (75), Expect = 0.59
Identities = 54/255 (21%), Positives = 99/255 (38%), Gaps = 43/255 (16%)
Query: 716 ILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPR----NGISHSVEHARLIACE- 770
+LE IP G+ + L+ D+ + L L L P S +
Sbjct: 84 LLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAE 143
Query: 771 -IGFPLLIRPSYVLGGR-AMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTL 828
+GFP++++P+ G + V SE LQ L + EE+
Sbjct: 144 PLGFPVIVKPA-REGSSVGVSKVKSEEELQAALDEAFE--YDEEV--------------- 185
Query: 829 LGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIE-----EAGIHSGDSACSLPSR 883
L + ++ E++V L + + ++ I+ IE EA + S +
Sbjct: 186 ------LVEQFIK-GRELEVSILGNEEALPIIEIVPEIEGFYDYEAK-YLDGSTEYVIPA 237
Query: 884 SLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRASRT----VPFIA 938
L ++L++++ AL GL V + + ++G+IY+ E+N T P A
Sbjct: 238 PLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINTIPGMTAISLFPKAA 297
Query: 939 KAIGFPVAKVAARII 953
A G +++ RI+
Sbjct: 298 AAAGIEFSQLVERIL 312
>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions.
Length = 864
Score = 32.1 bits (73), Expect = 0.82
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 700 GIIVQFGGQTPLKLSKILEKNQIPILGTQPD-----SIDLAEDRDRFQKLLMELDLNQPR 754
G +VQ G Q I T+ D ++++A D+D +++L + + P
Sbjct: 181 GSLVQLG----------YGSRQKRIQATETDRTSAIAVEIACDKDLTKEILSDAGVPVPE 230
Query: 755 NGISHSVEHARLIACEIGFPLLIRP 779
+ S E A A ++G+P++I+P
Sbjct: 231 GTVVQSAEDAWEAAQDLGYPVVIKP 255
>gnl|CDD|162665 TIGR02025, BchH, magnesium chelatase, H subunit. This model
represents the H subunit of the magnesium chelatase
complex responsible for magnesium insertion into the
protoporphyrin IX ring in the biosynthesis of both
chlorophyll and bacteriochlorophyll. In
chlorophyll-utilizing species, this gene is known as
ChlH, while in bacteriochlorophyll-utilizing spoecies it
is called BchH. Subunit H is the largest (~140kDa) of the
three subunits (the others being BchD/ChlD and
BchI/ChlI), and is known to bind protoporphyrin IX.
Subunit H is homologous to the CobN subunit of
cobaltochelatase and by anology with that enzyme, subunit
H is believed to also bind the magnesium ion which is
inserted into the ring. In conjunction with the
hydrolysis of ATP by subunits I and D, a conformation
change is believed to happen in subunit H causing the
magnesium ion insertion into the distorted protoporphyrin
ring.
Length = 1216
Score = 31.7 bits (72), Expect = 1.3
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 1065 GTARFLESHGLET-QKINKVLEGRPHIED-----AISNRQVHLVINTTE----GKKAIED 1114
R LE+ GL+ + L+GR +ED + + +V V++ T G A D
Sbjct: 261 NLIRELEAAGLQVVPAFSGGLDGRVAVEDFFMKDSTPSVKVDAVVSLTGFSLVGGPAGSD 320
Query: 1115 SKSLRRATLIRKIPYYTTIAGADAVFQAIQALKAGNLEVHSLQS 1158
+ + +PY I +FQ I++ A +L + LQ
Sbjct: 321 AAAAVEILKGLDVPY---IVAIPLLFQTIESWTASDLGLGPLQV 361
>gnl|CDD|179423 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 435
Score = 30.1 bits (69), Expect = 3.2
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 489 DRLRTVAQALR-LGVSVEETH 508
DR+ +A LR LG VEET
Sbjct: 351 DRIAAMATELRKLGAEVEETE 371
>gnl|CDD|117020 pfam08443, RimK, RimK-like ATP-grasp domain. This ATP-grasp domain
is found in the ribosomal S6 modification enzyme RimK.
Length = 190
Score = 30.1 bits (68), Expect = 3.5
Identities = 41/200 (20%), Positives = 77/200 (38%), Gaps = 39/200 (19%)
Query: 735 AEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEI-GFPLLIRPSYVLGGRAMQIVYS 793
A D+ + +LL + + P G++ S E A +I GFP++++ + G + +
Sbjct: 1 ARDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAED 60
Query: 794 ENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQ 853
E L+ LL+ L + +L ++++A D+ L
Sbjct: 61 EQSLEQ-LLEAFKWL----------------------KNQILVQEFIAEAGNRDIRCLVV 97
Query: 854 NDQVIVVGIIEHIEEAG-----IHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIG 908
+ VVG I G +H G A LSQ+ ++ I +A+ + +
Sbjct: 98 GGE--VVGAIHRQSNEGDFRTNLHRGGVAEPY---QLSQEEEEIAIKAAQAMGLDVLGVD 152
Query: 909 LINVQYAIKDGKIYILEVNP 928
+ K G + + EVN
Sbjct: 153 IFRS----KRG-LLVCEVNS 167
>gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2.
This enzyme is an alternative to PurN (TIGR00639).
Length = 380
Score = 30.1 bits (68), Expect = 3.7
Identities = 38/198 (19%), Positives = 74/198 (37%), Gaps = 25/198 (12%)
Query: 734 LAEDRDRFQKLLME-LDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVY 792
L +R+ ++L E L L R + S++ R +IG+P +++P G+ +V
Sbjct: 97 LTMNREGIRRLAAEELGLPTSRYMFADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVR 156
Query: 793 SENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALC 852
++ + Q G ++ + ++ EI + +
Sbjct: 157 GPEDIE-------------------KAWEYAQEGARGGAGRVIVEEFIDFDYEITLLTVR 197
Query: 853 QND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLIN 911
D I H + GD S + +S++ +E K + AL GL
Sbjct: 198 HVDGNTTFCAPIGHRQI----DGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFG 253
Query: 912 VQYAIKDGKIYILEVNPR 929
V+ +K ++ EV+PR
Sbjct: 254 VELFVKGDEVIFSEVSPR 271
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 29.8 bits (67), Expect = 3.9
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 30 GTQACKALKEEGYRIILVNSNPATIMTDPDLA 61
GT + K++GY + P M + DLA
Sbjct: 270 GTFEKPSEKKKGYVL------PRAKMVNADLA 295
>gnl|CDD|130495 TIGR01428, HAD_type_II, 2-haloalkanoic acid dehalogenase, type II.
Note that the Type I HAD enzymes have not yet been fully
characterized, but clearly utilize a substantially
different catalytic mechanism and are thus unlikely to
be related.
Length = 198
Score = 29.6 bits (67), Expect = 4.5
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 32 QACKALKEEGYRI-ILVNSNPATIM 55
+ALKE GYR+ IL N +PA +
Sbjct: 99 AGLRALKERGYRLAILSNGSPAMLK 123
>gnl|CDD|184488 PRK14072, PRK14072, 6-phosphofructokinase; Provisional.
Length = 416
Score = 29.4 bits (67), Expect = 4.8
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 331 ESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAK---LAVGYTLDE 387
G A V++A+ KNG M I R S K P++K+A K + + ++E
Sbjct: 315 AVGKAAVEYALAGKNGVMPAIR---RTS-DDPYKWKIGLVPLSKVANKEKKMPPEF-INE 369
Query: 388 LGNDIT 393
GN IT
Sbjct: 370 DGNGIT 375
>gnl|CDD|152250 pfam11814, DUF3335, Domain of unknown function (DUF3335). This
family of proteins are functionally uncharacterized. This
family is only found in bacteria. This presumed domain is
typically between 226 to 230 amino acids in length.
Length = 228
Score = 29.5 bits (67), Expect = 5.7
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 1015 LAFAKSQLGIGVDL--PHEGTVFV-SVRDADKKRIVPIIQN 1052
LA A + G V++ +G +F+ SVR +KK ++ ++
Sbjct: 79 LALAAHRRGFEVEVYVSTDGPLFLDSVRSENKKEVMRLVHE 119
>gnl|CDD|139472 PRK13302, PRK13302, putative L-aspartate dehydrogenase;
Provisional.
Length = 271
Score = 29.4 bits (66), Expect = 5.9
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 96 LNTALSLKRMGV-LDRYGVEMIGAKP------ETIDKAEDRSLFSKAMQNIPLATPKSIL 148
LN A++L G+ DR +E I A P I+ D + FS ++NIP PK+
Sbjct: 192 LNVAVALSLAGIGPDRTTLE-IWADPGVTRNVHRIEVDADSARFSMTIENIPSENPKTGR 250
Query: 149 ANATDIKEHDRKL 161
A + RK
Sbjct: 251 ITAQSVIALLRKQ 263
>gnl|CDD|178291 PLN02688, PLN02688, pyrroline-5-carboxylate reductase.
Length = 266
Score = 29.2 bits (66), Expect = 6.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 337 VQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKI 375
+ AV P+ K V+ E+ P +S+ L S A G +A +
Sbjct: 65 IILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADL 103
>gnl|CDD|179229 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
Provisional.
Length = 679
Score = 29.0 bits (66), Expect = 7.0
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 648 LKEAGFETIMINC-NPETVSTDYDIA-----DRLYFESLTEEDILEILRVEQQKGELV 699
L++ G +T+MI NP T + IA D E+ T ED L ++R EQ +G LV
Sbjct: 457 LRKMGIKTVMITGDNPLTAAA---IAAEAGVDDFLAEA-TPEDKLALIRQEQAEGRLV 510
>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism
associated alcohol dehydrogenase. This clade of
zinc-binding alcohol dehydrogenases (members of
pfam00107) are repeatedly associated with genes proposed
to be involved with the catabolism of phosphonate
compounds.
Length = 280
Score = 29.0 bits (65), Expect = 7.1
Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 13/101 (12%)
Query: 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEG-YRIILVNSNPATIMTDPDLADATYT 66
+ +L++GAG + G A A G R++ + +P
Sbjct: 122 RRVLVVGAGML-----------GLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALA 170
Query: 67 EPITP-EVVAKIIEKERPDAILPTTGGQTALNTALSLKRMG 106
EP E + D L +G A+ L +G
Sbjct: 171 EPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG 211
>gnl|CDD|181191 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 29.1 bits (66), Expect = 7.3
Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 11/81 (13%)
Query: 31 TQACKALKEEGYRIILVN--SNPATIMTDPDLADATYTEPITPEVVAKIIE--KERPD-- 84
K+E YR N + P TPE+ AK+ ER
Sbjct: 468 ALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERDPWA 527
Query: 85 AILPTTG-----GQTALNTAL 100
A++ G Q ALN
Sbjct: 528 ALVSQLGLPGLVEQLALNAWK 548
>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase. E. coli His-90
modulates substrate specificity and is believed part of
the active site.
Length = 340
Score = 29.1 bits (65), Expect = 7.9
Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 9/117 (7%)
Query: 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTE 67
K++L+ GAGPI + SG YR+ L AT + +P D
Sbjct: 163 KSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVV--- 219
Query: 68 PITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETID 124
+ VA + + E D L +G AL L G R + + TID
Sbjct: 220 ----KEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG--GRVSLLGLPPGKVTID 270
>gnl|CDD|173034 PRK14570, PRK14570, D-alanyl-alanine synthetase A; Provisional.
Length = 364
Score = 29.0 bits (65), Expect = 8.2
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 196 RKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTT 255
RK+ Y + + +G P+I++P+ G +AYN ++ + +E T
Sbjct: 151 RKYDYFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLT- 209
Query: 256 EVLIEE 261
V+IE+
Sbjct: 210 -VVIEK 214
>gnl|CDD|130247 TIGR01179, galE, UDP-glucose-4-epimerase. This enzyme
interconverts UDP-glucose and UDP-galactose. A set of
related proteins, some of which are tentatively
identified as UDP-glucose-4-epimerase in Thermotoga
maritima, Bacillus halodurans, and several archaea, but
deeply branched from this set and lacking experimental
evidence, are excluded from this model and described
separately.
Length = 328
Score = 28.8 bits (65), Expect = 9.4
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 22/74 (29%)
Query: 28 YSGTQACKALKEEGYRII----LVNSNPATI-----MTDP-----DLADATYTEPITPEV 73
Y G+ + L E G+ ++ L N +P + +T DL D E+
Sbjct: 10 YIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDR--------EL 61
Query: 74 VAKIIEKERPDAIL 87
+ ++ E+ + DA++
Sbjct: 62 LDRLFEEHKIDAVI 75
>gnl|CDD|180147 PRK05583, PRK05583, ribosomal protein L7Ae family protein;
Provisional.
Length = 104
Score = 28.5 bits (64), Expect = 9.7
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 1068 RFLESHGLETQKINKVLEGRPHIEDAISNRQVHLVI 1103
+FL GL T+K K+LEG E+AI ++V+L+I
Sbjct: 4 KFLNFLGL-TKKAGKLLEGYNKCEEAIKKKKVYLII 38
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.136 0.386
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 19,307,640
Number of extensions: 1327161
Number of successful extensions: 3473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3373
Number of HSP's successfully gapped: 99
Length of query: 1162
Length of database: 5,994,473
Length adjustment: 104
Effective length of query: 1058
Effective length of database: 3,747,241
Effective search space: 3964580978
Effective search space used: 3964580978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)