RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] (1162 letters) >gnl|CDD|179998 PRK05294, carB, carbamoyl phosphate synthase large subunit; Reviewed. Length = 1066 Score = 1953 bits (5063), Expect = 0.0 Identities = 694/1159 (59%), Positives = 853/1159 (73%), Gaps = 94/1159 (8%) Query: 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDL 60 MPKR D+K +LIIG+GPIVIGQACEFDYSGTQACKAL+EEGYR++LVNSNPATIMTDP++ Sbjct: 1 MPKRTDIKKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSNPATIMTDPEM 60 Query: 61 ADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKP 120 ADATY EPITPE V KIIEKERPDAILPT GGQTALN A+ L GVL++YGVE+IGAK Sbjct: 61 ADATYIEPITPEFVEKIIEKERPDAILPTMGGQTALNLAVELAESGVLEKYGVELIGAKL 120 Query: 121 ETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDA 180 E IDKAEDR LF +AM+ I L P+S Sbjct: 121 EAIDKAEDRELFKEAMKKIGLPVPRS---------------------------------- 146 Query: 181 ALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE 240 I H+M A++ +EIG P+IIRPSFTLGGTGGGIAYN E Sbjct: 147 -------------------GIAHSMEEALEVAEEIGYPVIIRPSFTLGGTGGGIAYNEEE 187 Query: 241 FLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDS 300 EIVE GL SP TEVLIEES+LGWKEYE E+MRD NCI+VCSIEN+DPMGVHTGDS Sbjct: 188 LEEIVERGLDLSPVTEVLIEESLLGWKEYEYEVMRDKNDNCIIVCSIENIDPMGVHTGDS 247 Query: 301 ITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS 360 ITVAPA TLTDKEYQ++R+A+IA+++EIGVE+GG NVQFA+NPK+G+ +VIEMNPRVSRS Sbjct: 248 ITVAPAQTLTDKEYQMLRDASIAIIREIGVETGGCNVQFALNPKDGRYIVIEMNPRVSRS 307 Query: 361 SALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKF 420 SALASKATG+PIAK+AAKLAVGYTLDE+ NDIT GKTPASFEPS+DY+VTKIPRF FEKF Sbjct: 308 SALASKATGYPIAKVAAKLAVGYTLDEIKNDIT-GKTPASFEPSLDYVVTKIPRFAFEKF 366 Query: 421 PGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALR 480 PG+D L T MKSVGEVMAIGRTF ESLQKALR LE G+TGLDE + + LR Sbjct: 367 PGADRRLGTQMKSVGEVMAIGRTFEESLQKALRSLEIGVTGLDE----DLFEEESLEELR 422 Query: 481 SAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDF 540 + P P+RL +A+A R G SVEE H+ + IDPWF++QI+ IV++E ++E+GLP D Sbjct: 423 EELKEPTPERLFYIAEAFRRGASVEEIHELTKIDPWFLEQIEEIVELEEELKENGLPLDA 482 Query: 541 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600 + L+ K +GFSDAR++ L G+ +E+RK+R +G+HPV+K VDTCA EF + T Y YST Sbjct: 483 ELLREAKRLGFSDARIAKLLGVTEDEVRKLRKALGIHPVYKRVDTCAAEFEADTPYYYST 542 Query: 601 YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC 660 YE E SDRKK+++LG GPNRIGQGIEFDYCC HA +L+EAG+ETIM+NC Sbjct: 543 YEEE------CESNPSDRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNC 596 Query: 661 NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN 720 NPETVSTDYD +DRLYFE LT ED+LEI+ E+ K G+IVQFGGQTPLKL+K LE Sbjct: 597 NPETVSTDYDTSDRLYFEPLTLEDVLEIIEKEKPK----GVIVQFGGQTPLKLAKALEAA 652 Query: 721 QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPS 780 +PILGT PD+IDLAEDR+RF KLL +L + QP NG + SVE A +A EIG+P+L+RPS Sbjct: 653 GVPILGTSPDAIDLAEDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIGYPVLVRPS 712 Query: 781 YVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL 840 YVLGGRAM+IVY E L+ Y+ + + + HP+L D +L Sbjct: 713 YVLGGRAMEIVYDEEELERYMREAV---------------------KVSPDHPVLIDKFL 751 Query: 841 SDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKAL 900 A+E+DVDA+C + V++ GI+EHIEEAG+HSGDSACSLP ++LS+++ +E+ TK L Sbjct: 752 EGAIEVDVDAICDGEDVLIGGIMEHIEEAGVHSGDSACSLPPQTLSEEIIEEIREYTKKL 811 Query: 901 AGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960 A LNV+GL+NVQ+A+KD ++Y++EVNPRASRTVPF++KA G P+AK+AAR++ G+ L Sbjct: 812 ALELNVVGLMNVQFAVKDDEVYVIEVNPRASRTVPFVSKATGVPLAKIAARVMLGKKLAE 871 Query: 961 SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKS 1020 G P + AVKE+VFPFNKFPGVD LLGPEM+STGEV+GID+ F AFAK+ Sbjct: 872 LGYTKGLIP-----PYVAVKEAVFPFNKFPGVDPLLGPEMKSTGEVMGIDRTFGEAFAKA 926 Query: 1021 QLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKI 1080 QL G LP GTVF+SVRD DK+ +V + + +LGFKI+AT GTA+FL G+ + + Sbjct: 927 QLAAGNRLPTSGTVFLSVRDRDKEEVVELAKRLLELGFKILATSGTAKFLREAGIPVELV 986 Query: 1081 NKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGADAVF 1140 NKV EGRPHI D I N ++ LVINT G++AI D S+RRA L K+PY TT+AGA A Sbjct: 987 NKVHEGRPHIVDLIKNGEIDLVINTPTGRQAIRDGFSIRRAALEYKVPYITTLAGARAAV 1046 Query: 1141 QAIQALKAGNLEVHSLQSY 1159 +AI+ALK G LEV SLQ Y Sbjct: 1047 KAIEALKFGELEVRSLQEY 1065 >gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. Length = 1050 Score = 1495 bits (3872), Expect = 0.0 Identities = 608/1144 (53%), Positives = 792/1144 (69%), Gaps = 96/1144 (8%) Query: 2 PKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLA 61 PKR D+K +L+IG+GPIVIGQA EFDYSG+QACKALKEEGYR+ILVNSNPATIMTDP++A Sbjct: 1 PKRTDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYRVILVNSNPATIMTDPEMA 60 Query: 62 DATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPE 121 D Y EP+TPE V KIIEKERPDAILPT GGQTALN A+ L+ GVL++YGVE++G E Sbjct: 61 DKVYIEPLTPEAVEKIIEKERPDAILPTFGGQTALNLAVELEESGVLEKYGVEVLGTPVE 120 Query: 122 TIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAA 181 I KAEDR LF +AM+ I P+S Sbjct: 121 AIKKAEDRELFREAMKEIGEPVPES----------------------------------- 145 Query: 182 LYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEF 241 I H++ A+ A EIG P+I+RP+FTLGGTGGGIAYNR E Sbjct: 146 ------------------EIAHSVEEALAAAKEIGYPVIVRPAFTLGGTGGGIAYNREEL 187 Query: 242 LEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSI 301 EI E L ASP +VL+E+S+ GWKE E E+MRD NCI VC++EN DPMGVHTGDSI Sbjct: 188 KEIAERALSASPINQVLVEKSLAGWKEIEYEVMRDSNDNCITVCNMENFDPMGVHTGDSI 247 Query: 302 TVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSS 361 VAP+ TLTDKEYQ++R+A+I +++E+G+E GG NVQFA+NP +G+ VIE+NPRVSRSS Sbjct: 248 VVAPSQTLTDKEYQMLRDASIKIIRELGIE-GGCNVQFALNPDSGRYYVIEVNPRVSRSS 306 Query: 362 ALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKFP 421 ALASKATG+PIAK+AAKLAVGY LDEL N +T G TPASFEPS+DY+V KIPR+ F+KF Sbjct: 307 ALASKATGYPIAKVAAKLAVGYGLDELKNPVT-GTTPASFEPSLDYVVVKIPRWDFDKFA 365 Query: 422 GSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALRS 481 G D L T MKSVGEVMAIGRTF E+LQKALR LE G TG D + +E D D L Sbjct: 366 GVDRKLGTQMKSVGEVMAIGRTFEEALQKALRSLEIGATGFD-LPDREVEPDED---LWR 421 Query: 482 AISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGL-PKDF 540 A+ P R+ +A+ALR GVSV+E H+ + ID WF+ +IK IVD+E + E L D Sbjct: 422 ALKKPTDRRIFAIAEALRRGVSVDEIHELTKIDRWFLHKIKNIVDLEEELEEVKLTELDP 481 Query: 541 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600 + L+ K +GFSDA+++ L G+ E+RK+R ++G+ PV+K VDTCA EF + T Y+YST Sbjct: 482 ELLRRAKKLGFSDAQIARLIGVTEAEVRKLRKELGIMPVYKRVDTCAAEFEAQTPYLYST 541 Query: 601 YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC 660 YE + P +D+KK+++LG GPNRIGQG+EFDYCC HA +L+E G+ETIMIN Sbjct: 542 YEGERDDVP-----FTDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINY 596 Query: 661 NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN 720 NPETVSTDYD +DRLYFE LT ED++ I+ +E+ + G+IVQFGGQTPL L+K LE+ Sbjct: 597 NPETVSTDYDTSDRLYFEPLTFEDVMNIIELEKPE----GVIVQFGGQTPLNLAKALEEA 652 Query: 721 QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPS 780 +PILGT P+SID AEDR++F +LL EL + QP+ + SVE A A EIG+P+L+RPS Sbjct: 653 GVPILGTSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIGYPVLVRPS 712 Query: 781 YVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL 840 YVLGGRAM+IVY+E L+ YL + + VS E HP+L D YL Sbjct: 713 YVLGGRAMEIVYNEEELRRYLEEAVE--VSPE-------------------HPVLIDKYL 751 Query: 841 SDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKAL 900 DA+E+DVDA+ ++V++ GI+EHIEEAG+HSGDS C LP ++LS ++ D + + + Sbjct: 752 EDAVEVDVDAVSDGEEVLIPGIMEHIEEAGVHSGDSTCVLPPQTLSAEIVDRIKDIVRKI 811 Query: 901 AGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960 A LNV GL+N+Q+A+KDG++Y++EVNPRASRTVPF++KA G P+ K+A R++ G+ L+ Sbjct: 812 AKELNVKGLMNIQFAVKDGEVYVIEVNPRASRTVPFVSKATGVPLIKLATRVMLGKKLEE 871 Query: 961 SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKS 1020 GK + K+ AVKE VF F+K GVD +LGPEM+STGEV+GI +D AF K+ Sbjct: 872 --LGVGKEKEP---KYVAVKEPVFSFSKLAGVDPVLGPEMKSTGEVMGIGRDLAEAFLKA 926 Query: 1021 QLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKI 1080 QL G +P +G+V +SVRD DK+ ++ + + + G+K+ ATEGTA+FL G++ + + Sbjct: 927 QLSSGNRIPKKGSVLLSVRDKDKEELLDLARKLAEKGYKLYATEGTAKFLGEAGIKPELV 986 Query: 1081 NKVLEGRPHIEDAISNRQVHLVINTTE-GKKAIEDSKSLRRATLIRKIPYYTTIAGADAV 1139 KV EGRP+I D I N ++ LVINTT G D +RR L +P TT+ A+A Sbjct: 987 LKVSEGRPNILDLIKNGEIELVINTTSKGAGTATDGYKIRREALDYGVPLITTLNTAEAF 1046 Query: 1140 FQAI 1143 +A+ Sbjct: 1047 AEAL 1050 >gnl|CDD|178336 PLN02735, PLN02735, carbamoyl-phosphate synthase. Length = 1102 Score = 1428 bits (3698), Expect = 0.0 Identities = 622/1180 (52%), Positives = 812/1180 (68%), Gaps = 120/1180 (10%) Query: 3 KRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLAD 62 KR DLK ++I+GAGPIVIGQACEFDYSGTQACKALKEEGY ++L+NSNPATIMTDP+ AD Sbjct: 19 KRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETAD 78 Query: 63 ATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPET 122 TY P+TPE+V ++I KERPDA+LPT GGQTALN A++L G+L++YGVE+IGAK + Sbjct: 79 RTYIAPMTPELVEQVIAKERPDALLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDA 138 Query: 123 IDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAAL 182 I KAEDR LF +AM+ I L TP S +A Sbjct: 139 IKKAEDRELFKQAMEKIGLKTPPSGIAT-------------------------------- 166 Query: 183 YALELKWNLEENDRKHRYICHAMAVAVQALDEIG-LPLIIRPSFTLGGTGGGIAYNRSEF 241 L+E + ++IG PLIIRP+FTLGGTGGGIAYN+ EF Sbjct: 167 -------TLDE--------------CFEIAEDIGEFPLIIRPAFTLGGTGGGIAYNKEEF 205 Query: 242 LEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSI 301 I + GL AS T++VL+E+S+LGWKEYELE+MRD+ N +++CSIEN+DPMGVHTGDSI Sbjct: 206 ETICKAGLAASITSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSI 265 Query: 302 TVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSS 361 TVAPA TLTDKEYQ +R+ ++A+++EIGVE GG+NVQFAVNP +G++++IEMNPRVSRSS Sbjct: 266 TVAPAQTLTDKEYQRLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSS 325 Query: 362 ALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKFP 421 ALASKATGFPIAK+AAKL+VGYTLD++ NDIT KTPASFEPSIDY+VTKIPRF FEKFP Sbjct: 326 ALASKATGFPIAKMAAKLSVGYTLDQIPNDIT-LKTPASFEPSIDYVVTKIPRFAFEKFP 384 Query: 422 GSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALRS 481 GS LTT MKSVGE MA+GRTF ES QKALR LETG +G + ++ D + L+ Sbjct: 385 GSQPILTTQMKSVGEAMALGRTFQESFQKALRSLETGFSGWGCAKVKELDWDWE--QLKY 442 Query: 482 AISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPK-DF 540 + +P PDR+ + A++ G++V+E H+ + IDPWF+ Q+K +VDVE ++ L + Sbjct: 443 KLRVPNPDRIHAIYAAMKKGMTVDEIHELTFIDPWFLTQLKELVDVEQFLKSRSLSELSK 502 Query: 541 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600 + +K GFSD +++ + E+R R +G+ P +K VDTCA EF + T YMYS+ Sbjct: 503 DDFYEVKRRGFSDKQIAFATKSTEKEVRSKRLSLGVTPSYKRVDTCAAEFEANTPYMYSS 562 Query: 601 YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC 660 Y+ E +++KK++ILGGGPNRIGQGIEFDYCCCHASF+L++AG+ETIM+N Sbjct: 563 YDGE------CESAPTNKKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNS 616 Query: 661 NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLS----KI 716 NPETVSTDYD +DRLYFE LT ED+L ++ +E+ GIIVQFGGQTPLKL+ K Sbjct: 617 NPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPD----GIIVQFGGQTPLKLALPIQKY 672 Query: 717 LEKNQIP---------ILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLI 767 L+KN P I GT PDSID AEDR+RF +L EL + QP+ GI+ S A I Sbjct: 673 LDKNPPPSASGNGNVKIWGTSPDSIDAAEDRERFNAILNELKIEQPKGGIARSEADALAI 732 Query: 768 ACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINT 827 A IG+P+++RPSYVLGGRAM+IVYS++ L+ YL + V E Sbjct: 733 AKRIGYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVE--VDPE--------------- 775 Query: 828 LLGTHPLLFDSYLSDAMEIDVDALCQND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLS 886 P+L D YLSDA EIDVDAL ++ V++ GI+EHIE+AG+HSGDSACSLP++++ Sbjct: 776 ----RPVLVDKYLSDATEIDVDALADSEGNVVIGGIMEHIEQAGVHSGDSACSLPTQTIP 831 Query: 887 QQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRASRTVPFIAKAIGFPV 945 + T LA LNV GL+N QYAI G++YI+E NPRASRTVPF++KAIG P+ Sbjct: 832 SSCLATIRDWTTKLAKRLNVCGLMNCQYAITPSGEVYIIEANPRASRTVPFVSKAIGHPL 891 Query: 946 AKVAARIIAGESLDASIAAYGKRPDLS-----QIKHFAVKESVFPFNKFPGVDILLGPEM 1000 AK A+ +++G+SL DL H +VKE+V PF+KF G D+LLGPEM Sbjct: 892 AKYASLVMSGKSL----------KDLGFTEEVIPAHVSVKEAVLPFDKFQGCDVLLGPEM 941 Query: 1001 RSTGEVIGIDQDFPLAFAKSQLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKI 1060 RSTGEV+GID +F AFAK+Q+ G LP GTVF+S+ D K +VPI + F +LGF+I Sbjct: 942 RSTGEVMGIDYEFSKAFAKAQIAAGQRLPLSGTVFISLNDLTKPHLVPIARGFLELGFRI 1001 Query: 1061 MATEGTARFLESHGLETQKINKVLEGRPHIEDAISNRQVHLVINTTEGKKA-IEDSKSLR 1119 ++T GTA FLE G+ +++ K+ EGRPH D ++N Q+ L++ T+ G +D + LR Sbjct: 1002 VSTSGTAHFLELAGIPVERVLKLHEGRPHAGDMLANGQIQLMVITSSGDALDQKDGRQLR 1061 Query: 1120 RATLIRKIPYYTTIAGADAVFQAIQALKAGNLEVHSLQSY 1159 R L K+P TT+AGA A QA+++LK +E+ +LQ + Sbjct: 1062 RMALAYKVPIITTVAGALATAQAVKSLKECPIEMIALQDF 1101 Score = 225 bits (574), Expect = 8e-59 Identities = 143/435 (32%), Positives = 228/435 (52%), Gaps = 37/435 (8%) Query: 599 STYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMI 658 + T + K +D KKI+ILG GP IGQ EFDY A +LKE G+E ++I Sbjct: 4 ADTVTRAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLI 63 Query: 659 NCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSK--- 715 N NP T+ TD + ADR Y +T E + +++ E+ ++ GGQT L L+ Sbjct: 64 NSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPD----ALLPTMGGQTALNLAVALA 119 Query: 716 ---ILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIG 772 ILEK + ++G + D+I AEDR+ F++ + ++ L P +GI+ +++ IA +IG Sbjct: 120 ESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLKTPPSGIATTLDECFEIAEDIG 179 Query: 773 -FPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGT 831 FPL+IRP++ LGG I Y N + ++ I Q +K +LLG Sbjct: 180 EFPLIIRPAFTLGGTGGGIAY--NK--EEFETICKAGLAASITSQVLVEK-----SLLG- 229 Query: 832 HPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKD 891 + Y + M D+ D V+++ IE+I+ G+H+GDS P+++L+ + Sbjct: 230 ----WKEYELEVMR-DL-----ADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQ 279 Query: 892 ELISQTKALAGALNV-IGLINVQYAI--KDGKIYILEVNPRASRTVPFIAKAIGFPVAKV 948 L + A+ + V G NVQ+A+ DG++ I+E+NPR SR+ +KA GFP+AK+ Sbjct: 280 RLRDYSVAIIREIGVECGGSNVQFAVNPVDGEVMIIEMNPRVSRSSALASKATGFPIAKM 339 Query: 949 AARIIAGESLDASIAAYGKRPDLS---QIKHFAVKESVFPFNKFPGVDILLGPEMRSTGE 1005 AA++ G +LD + S I + K F F KFPG +L +M+S GE Sbjct: 340 AAKLSVGYTLDQIPNDITLKTPASFEPSIDYVVTKIPRFAFEKFPGSQPILTTQMKSVGE 399 Query: 1006 VIGIDQDFPLAFAKS 1020 + + + F +F K+ Sbjct: 400 AMALGRTFQESFQKA 414 >gnl|CDD|183765 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed. Length = 1068 Score = 1366 bits (3538), Expect = 0.0 Identities = 539/1163 (46%), Positives = 728/1163 (62%), Gaps = 100/1163 (8%) Query: 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDL 60 MPK D++ +L+IG+GPIVIGQA EFDYSGTQAC ALKEEGY+++LVN NPATIMTDP Sbjct: 1 MPKDTDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAP 60 Query: 61 ADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKP 120 AD Y EP+T E V +II +E+PDA+L T GGQTALN A+ L G+L++YGVE++G Sbjct: 61 ADTVYFEPLTVEFVKRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNI 120 Query: 121 ETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDA 180 E I K EDR F M+ + P+S E + Sbjct: 121 EAIQKGEDRERFRALMKELGEPVPES-----------------------------EIVT- 150 Query: 181 ALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE 240 ++EE A+ ++IG P+I+RP++TLGGTGGGIA N E Sbjct: 151 ---------SVEE--------------ALAFAEKIGFPIIVRPAYTLGGTGGGIAENLEE 187 Query: 241 FLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDS 300 ++ + GL ASP + L+EES+ GWKE E E+MRD GNCI VC++EN+DP+G+HTGDS Sbjct: 188 LEQLFKQGLQASPIHQCLLEESIAGWKEIEYEVMRDRNGNCITVCNMENIDPVGIHTGDS 247 Query: 301 ITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS 360 I VAP+ TLTD EYQ++R+A++ ++ +GV GG N+QFA++PK+ + +IE+NPRVSRS Sbjct: 248 IVVAPSQTLTDDEYQMLRSASLKIISALGV-VGGCNIQFALDPKSKQYYLIEVNPRVSRS 306 Query: 361 SALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKF 420 SALASKATG+PIAKIAAKLAVGYTL+EL N +T G T ASFEP++DY+V K PR+ F+KF Sbjct: 307 SALASKATGYPIAKIAAKLAVGYTLNELKNPVT-GLTYASFEPALDYVVVKFPRWPFDKF 365 Query: 421 PGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALR 480 +D TL T MK+ GEVMAIGR F + QKALR LE GL +P S L Sbjct: 366 GYADRTLGTQMKATGEVMAIGRNFESAFQKALRSLEIKRNGL---SLPIELSGKSDEELL 422 Query: 481 SAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDF 540 + P RL + +ALR G++ EE H+ + IDP+F+Q+ + IV +E ++ E GL Sbjct: 423 QDLRHPDDRRLFALLEALRRGITYEEIHELTKIDPFFLQKFEHIVALEKKLAEDGLDLSA 482 Query: 541 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600 L+ +K GFSDA L+ L+G+ E+R +R ++G+ P +K VDTCA EF + T Y YST Sbjct: 483 DLLRKVKEKGFSDALLAELTGVTEEEVRALRKKLGIRPSYKMVDTCAAEFEAKTPYYYST 542 Query: 601 YETNFINKPVSEDKV---SDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIM 657 Y E + S++KK++ILG GP RIGQGIEFDY HA+F+LK+ G+ETIM Sbjct: 543 YFG--------ESEAEPSSEKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIM 594 Query: 658 INCNPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKIL 717 IN NPETVSTDYD ADRLYFE LT ED+L + E K G+IVQFGGQT + L+K L Sbjct: 595 INNNPETVSTDYDTADRLYFEPLTLEDVLNVAEAENIK----GVIVQFGGQTAINLAKGL 650 Query: 718 EKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLI 777 E+ + ILGT PD+ID EDRDRF +LL EL L + E A A IG+P+LI Sbjct: 651 EEAGLTILGTSPDTIDRLEDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRIGYPVLI 710 Query: 778 RPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFD 837 RPSYV+GG+ M +VY E L+ YL E Q +P+L D Sbjct: 711 RPSYVIGGQGMAVVYDEPALEAYL---------AENASQ--------------LYPILID 747 Query: 838 SYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQT 897 ++ D E +VDA+ + V + GIIEHIE+AG+HSGDS LP +SLS++ ++++ Sbjct: 748 QFI-DGKEYEVDAISDGEDVTIPGIIEHIEQAGVHSGDSIAVLPPQSLSEEQQEKIRDYA 806 Query: 898 KALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGES 957 +A L G++N+Q+ + + +IY+LEVNPRASRTVPF++KA G P+AK+A +++ G+S Sbjct: 807 IKIAKKLGFRGIMNIQFVLANDEIYVLEVNPRASRTVPFVSKATGVPLAKLATKVLLGKS 866 Query: 958 LDASIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAF 1017 L G P VK VF + K+PGVD LGPEM+STGEV+GID+D A Sbjct: 867 LAELGYPNGLWPGSP---FIHVKMPVFSYLKYPGVDNTLGPEMKSTGEVMGIDKDLEEAL 923 Query: 1018 AKSQLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLET 1077 K + +P GT+F+SVRD DK + + + F +LGFK++ATEGTA +L G+ T Sbjct: 924 YKGYEASDLHIPSYGTIFISVRDEDKPEVTKLARRFAQLGFKLLATEGTANWLAEEGITT 983 Query: 1078 QKINKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGAD 1137 + KV EG P + + I ++ LV+NT+ A ED+ +R L IP +T + A Sbjct: 984 GVVEKVQEGSPSLLERIKQHRIVLVVNTSLSDSASEDAIKIRDEALSTHIPVFTELETAQ 1043 Query: 1138 AVFQAIQALKAGNLEVHSLQSYR 1160 A Q +++L + LQ Sbjct: 1044 AFLQVLESLALTTQPIQELQEKH 1066 >gnl|CDD|129084 smart00851, MGS, MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357. Length = 90 Score = 104 bits (261), Expect = 2e-22 Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 3/90 (3%) Query: 1045 RIVPIIQNFKKLGFKIMATEGTARFLESHGLE-TQKINKVLEGRPHIEDAISNRQVHLVI 1103 +V + + +LGF+++AT GTA+FL GL KV G I D I N ++ LVI Sbjct: 1 GLVELAKRLAELGFELVATGGTAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVI 60 Query: 1104 NTTE--GKKAIEDSKSLRRATLIRKIPYYT 1131 NT G + ED K+LRRA IP T Sbjct: 61 NTLYPLGAQPHEDGKALRRAAENIDIPGAT 90 >gnl|CDD|183732 PRK12767, PRK12767, carbamoyl phosphate synthase-like protein; Provisional. Length = 326 Score = 67.6 bits (166), Expect = 2e-11 Identities = 63/293 (21%), Positives = 113/293 (38%), Gaps = 57/293 (19%) Query: 683 EDILEILRVEQQKGELVGIIVQFGGQTPLKL-----SKILEKNQIPILGTQPDSIDLAED 737 + +L+I + E+ + I L L + E ++ + + I++ D Sbjct: 59 DRLLDICKKEKIDLLIPLI------DPELPLLAQNRDRFEEIGVKVLV-SSKEVIEICND 111 Query: 738 RDRFQKLLMELDLNQPRNGISHSVEH--ARLIACEIGFPLLIRPSYVLGGRAMQIVYSEN 795 + + L E + P++ + S+E A L E+ FPL ++P + V + Sbjct: 112 KWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGELQFPLFVKPRDGSASIGVFKVNDKE 171 Query: 796 MLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQND 855 L+ L ++ E I+ Q E VD LC + Sbjct: 172 ELEFLLEYVPNLIIQEFIEGQ----------------------------EYTVDVLCDLN 203 Query: 856 QVIVVGII--EHIEEAGIHSGDSACSLPSRSLSQQLKD-ELISQTKALAGALNVIGLINV 912 V+ I+ + IE + +G++ S+ ++ +KD EL + LA AL G +N+ Sbjct: 204 GE-VISIVPRKRIE---VRAGET-----SKGVT--VKDPELFKLAERLAEALGARGPLNI 252 Query: 913 QYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDASIAAY 965 Q + DG+ Y+ E+NPR P A G R + G + I Y Sbjct: 253 QCFVTDGEPYLFEINPRFGGGYPLSYMA-GANEPDWIIRNLLGGENEPIIGEY 304 Score = 50.7 bits (122), Expect = 2e-06 Identities = 74/351 (21%), Positives = 127/351 (36%), Gaps = 95/351 (27%) Query: 30 GTQACKALKEE--GYRIILVNSNP-ATIMTDPDLADATY-----TEPITPEVVAKIIEKE 81 Q KALK+ R+I + + A + AD Y T+P + + I +KE Sbjct: 12 RVQLVKALKKSLLKGRVIGADISELAPALY---FADKFYVVPKVTDPNYIDRLLDICKKE 68 Query: 82 RPDAILPTTGGQTALNTALSL--KRMGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNI 139 + D ++P + L L + + GV+++ + E I+ D+ L + ++ Sbjct: 69 KIDLLIPLI------DPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKEN 122 Query: 140 PLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYALELKWNLEENDRKHR 199 + TPKS L S E+ AAL Sbjct: 123 GIPTPKSYLPE-----------------------SLEDFKAAL----------------- 142 Query: 200 YICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE---FLEIVENGLHASPTTE 256 A E+ PL ++P G ++ E LE V N Sbjct: 143 -----------AKGELQFPLFVKPRDGSASIGVFKVNDKEELEFLLEYVPN--------- 182 Query: 257 VLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQL 316 ++I+E + G +EY ++++ D+ G I SI + V G++ +T+ D E Sbjct: 183 LIIQEFIEG-QEYTVDVLCDLNGEVI---SIVPRKRIEVRAGETSK---GVTVKDPELFK 235 Query: 317 MRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKA 367 + L G N+Q V +G+ + E+NPR L+ A Sbjct: 236 LAERLAEALGARGP----LNIQCFVT--DGEPYLFEINPRFGGGYPLSYMA 280 >gnl|CDD|181524 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated. Length = 499 Score = 60.8 bits (148), Expect = 2e-09 Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 25/198 (12%) Query: 208 AVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTT----EVLIEESV 263 A + +EIG P+II+ S GG G + Y+ E + +E+ + + V IE+ + Sbjct: 144 AKEIAEEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYL 203 Query: 264 LGWKEYELEMMRDIKGNCIVV----CSI----ENLDPMGVHTGDSITVAPALTLTDKEYQ 315 + E++++ D GN I + CSI + L I AP+ +T + + Sbjct: 204 EKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKL----------IEEAPSPIMTPELRE 253 Query: 316 LMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKI 375 M AA+ K I E+ G V+F + NG +EMN R+ + TG I K Sbjct: 254 RMGEAAVKAAKAINYENAGT-VEFLYS--NGNFYFLEMNTRLQVEHPITEMVTGIDIVKE 310 Query: 376 AAKLAVGYTLDELGNDIT 393 K+A G L DIT Sbjct: 311 QIKIAAGEELSFKQEDIT 328 Score = 49.2 bits (118), Expect = 6e-06 Identities = 67/262 (25%), Positives = 105/262 (40%), Gaps = 44/262 (16%) Query: 712 KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELD---LNQPRNGISHSVEHARLIA 768 + +K EK I +G D I+ + +KL+ + L GI +E A+ IA Sbjct: 90 EFAKACEKAGIVFIGPSSDVIEAMGSKINAKKLMKKAGVPVLPGTEEGIE-DIEEAKEIA 148 Query: 769 CEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTL 828 EIG+P++I+ S GG M++VYSE L+D + T + I + D T I Sbjct: 149 EEIGYPVIIKASAGGGGIGMRVVYSEEELEDAIEST------QSIAQSAFGDSTVFI--- 199 Query: 829 LGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSL-------- 880 + YL I++ L + IH GD CS+ Sbjct: 200 --------EKYLEKPRHIEIQILADKHGNV------------IHLGDRECSIQRRHQKLI 239 Query: 881 ---PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFI 937 PS ++ +L++ + A A+N V++ +G Y LE+N R P Sbjct: 240 EEAPSPIMTPELRERMGEAAVKAAKAINYENAGTVEFLYSNGNFYFLEMNTRLQVEHPIT 299 Query: 938 AKAIGFPVAKVAARIIAGESLD 959 G + K +I AGE L Sbjct: 300 EMVTGIDIVKEQIKIAAGEELS 321 >gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis. Length = 1143 Score = 58.7 bits (142), Expect = 9e-09 Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 20/191 (10%) Query: 205 MAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE------FLEIVENGLHASPTTEVL 258 M + IG P+II+ S+ GG G G+ RSE F A EV Sbjct: 141 MEEVLDFAAAIGYPVIIKASW--GGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVY 198 Query: 259 IEESVLGWKEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEY 314 +E+ + + E++++ D GN + + CS++ + VAPA L+ + Sbjct: 199 VEKLIERPRHIEVQLLGDKHGNVVHLFERDCSVQR------RHQKVVEVAPAPYLSREVR 252 Query: 315 QLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAK 374 + A+ + K + + G V+F V+ +GK IE+NPR+ + + TG I + Sbjct: 253 DEIAEYAVKLAKAVNYINAGT-VEFLVD-NDGKFYFIEVNPRIQVEHTVTEEITGIDIVQ 310 Query: 375 IAAKLAVGYTL 385 +A G +L Sbjct: 311 AQIHIADGASL 321 Score = 56.0 bits (135), Expect = 5e-08 Identities = 57/275 (20%), Positives = 104/275 (37%), Gaps = 47/275 (17%) Query: 718 EKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQP----RNGISHSVEHARLIACEIGF 773 K I +G + + +D D+ + L ++ P +G ++E A IG+ Sbjct: 96 NKAGIIFIGPKAEVMDQLGDKVAARNLAIKA--GVPVVPGTDGPPETMEEVLDFAAAIGY 153 Query: 774 PLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHP 833 P++I+ S+ GGR M++V SE ++ + K+ + G Sbjct: 154 PVIIKASWGGGGRGMRVVRSE----------------ADVADAFQRAKS-EAKAAFGNDE 196 Query: 834 LLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSL-----------PS 882 + + + I+V L +V H + CS+ P+ Sbjct: 197 VYVEKLIERPRHIEVQLLGDKHGNVV------------HLFERDCSVQRRHQKVVEVAPA 244 Query: 883 RSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRASRTVPFIAKAI 941 LS++++DE+ LA A+N I V++ + DGK Y +EVNPR + Sbjct: 245 PYLSREVRDEIAEYAVKLAKAVNYINAGTVEFLVDNDGKFYFIEVNPRIQVEHTVTEEIT 304 Query: 942 GFPVAKVAARIIAGESLDASIAAYGKRPDLSQIKH 976 G + + I G SL + D+ + Sbjct: 305 GIDIVQAQIHIADGASLPTPQLGVPNQEDIRTNGY 339 >gnl|CDD|180150 PRK05586, PRK05586, biotin carboxylase; Validated. Length = 447 Score = 55.5 bits (134), Expect = 8e-08 Identities = 57/266 (21%), Positives = 111/266 (41%), Gaps = 47/266 (17%) Query: 712 KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQP----RNGISHSVEHARLI 767 K +K+ ++ I +G ++I+L ++ ++++++ + P G + E A I Sbjct: 90 KFAKMCKECNIVFIGPDSETIELMGNKSNAREIMIKAGV--PVVPGSEGEIENEEEALEI 147 Query: 768 ACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINT 827 A EIG+P++++ S GGR ++IV SE EE+ + + K+ + Sbjct: 148 AKEIGYPVMVKASAGGGGRGIRIVRSE----------------EELIKAFNTAKS-EAKA 190 Query: 828 LLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSL------- 880 G + + ++ + I+ L N +V H G+ CSL Sbjct: 191 AFGDDSMYIEKFIENPKHIEFQILGDNYGNVV------------HLGERDCSLQRRNQKV 238 Query: 881 ----PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRASRTVP 935 PS ++++L+ ++ A A+N +++ + KDG Y +E+N R P Sbjct: 239 LEEAPSPVMTEELRKKMGEIAVKAAKAVNYKNAGTIEFLLDKDGNFYFMEMNTRIQVEHP 298 Query: 936 FIAKAIGFPVAKVAARIIAGESLDAS 961 G + K +I GE L Sbjct: 299 ITEMITGVDLVKEQIKIAYGEKLSIK 324 Score = 48.6 bits (116), Expect = 1e-05 Identities = 43/193 (22%), Positives = 83/193 (43%), Gaps = 16/193 (8%) Query: 208 AVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTT----EVLIEESV 263 A++ EIG P++++ S GG G I + E ++ + + IE+ + Sbjct: 144 ALEIAKEIGYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFI 203 Query: 264 LGWKEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRN 319 K E +++ D GN + + CS++ + AP+ +T++ + M Sbjct: 204 ENPKHIEFQILGDNYGNVVHLGERDCSLQR------RNQKVLEEAPSPVMTEELRKKMGE 257 Query: 320 AAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKL 379 A+ K + ++ G ++F ++ K+G +EMN R+ + TG + K K+ Sbjct: 258 IAVKAAKAVNYKNAG-TIEFLLD-KDGNFYFMEMNTRIQVEHPITEMITGVDLVKEQIKI 315 Query: 380 AVGYTLDELGNDI 392 A G L DI Sbjct: 316 AYGEKLSIKQEDI 328 >gnl|CDD|183781 PRK12833, PRK12833, acetyl-CoA carboxylase biotin carboxylase subunit; Provisional. Length = 467 Score = 52.8 bits (127), Expect = 5e-07 Identities = 46/217 (21%), Positives = 84/217 (38%), Gaps = 43/217 (19%) Query: 756 GISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKR 815 G+ S++ A +A IG+PL+I+ + GGR +++ + ++ Sbjct: 139 GVVASLDAALEVAARIGYPLMIKAAAGGGGRGIRVAHDA----------------AQLAA 182 Query: 816 QYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGD 875 + P + + G + + +++ A I+V L ++V +H + Sbjct: 183 ELPLAQR-EAQAAFGDGGVYLERFIARARHIEVQILGDGERV-------------VHLFE 228 Query: 876 SACSL-----------PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKD--GKIY 922 CSL PS SL+ +D L + LA + G ++Y D G+ Y Sbjct: 229 RECSLQRRRQKILEEAPSPSLTPAQRDALCASAVRLARQVGYRGAGTLEYLFDDARGEFY 288 Query: 923 ILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLD 959 +E+N R P G + + RI GE L Sbjct: 289 FIEMNTRIQVEHPVTEAITGIDLVQEMLRIADGEPLR 325 >gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated. Length = 472 Score = 52.4 bits (126), Expect = 8e-07 Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 20/195 (10%) Query: 208 AVQALDEIGLPLIIRPSFTLGGTGGGI------AYNRSEFLEIVENGLHASPTTEVLIEE 261 A+ + IG P++++ T GG G GI F ++ A + EV +E+ Sbjct: 143 ALAEAERIGYPVMLKA--TSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEK 200 Query: 262 SVLGWKEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLM 317 ++ K E++++ D GN + + CSI+ I +AP+ LT ++ + Sbjct: 201 CIVNPKHIEVQILADSHGNVVHLFERDCSIQR------RNQKLIEIAPSPQLTPEQRAYI 254 Query: 318 RNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAA 377 + A+ K +G E+ G V+F ++ +G++ +EMN RV + + TG I + Sbjct: 255 GDLAVRAAKAVGYENAG-TVEFLLD-ADGEVYFMEMNTRVQVEHTITEEITGIDIVREQI 312 Query: 378 KLAVGYTLDELGNDI 392 ++A G L DI Sbjct: 313 RIASGLPLSYKQEDI 327 >gnl|CDD|183835 PRK12999, PRK12999, pyruvate carboxylase; Reviewed. Length = 1146 Score = 49.0 bits (118), Expect = 8e-06 Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 54/215 (25%) Query: 205 MAVAVQALDEIGLPLIIRPSFTLGGTGGG--IAYNRSEFLEIVE-----------NGLHA 251 + A++ +EIG P++++ S GG G G I + E E E N Sbjct: 145 IEEALEFAEEIGYPIMLKAS--AGGGGRGMRIVRSEEELEEAFERAKREAKAAFGND--- 199 Query: 252 SPTTEVLIEESVLGWKEYELEMMRDIKGNCIVV------CS--------IENLDPMGVHT 297 EV +E+ V + E++++ D GN VV CS +E Sbjct: 200 ----EVYLEKYVENPRHIEVQILGDKHGN--VVHLYERDCSVQRRHQKVVE--------- 244 Query: 298 GDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRV 357 +APA L+++ + + AA+ + + +G + G V+F V+ +G IE+NPR+ Sbjct: 245 -----IAPAPGLSEELRERICEAAVKLARAVGYVNAGT-VEFLVDA-DGNFYFIEVNPRI 297 Query: 358 SRSSALASKATGFPIAKIAAKLAVGYTLDELGNDI 392 + + TG I + +A G TL +L I Sbjct: 298 QVEHTVTEEVTGIDIVQSQILIAEGATLHDLEIGI 332 Score = 38.2 bits (90), Expect = 0.012 Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 758 SHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQD 799 +E A A EIG+P++++ S GGR M+IV SE L++ Sbjct: 142 IDDIEEALEFAEEIGYPIMLKASAGGGGRGMRIVRSEEELEE 183 Score = 30.9 bits (71), Expect = 2.0 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%) Query: 881 PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPR 929 P+ LS++L++ + LA A+ + V++ + DG Y +EVNPR Sbjct: 247 PAPGLSEELRERICEAAVKLARAVGYVNAGTVEFLVDADGNFYFIEVNPR 296 >gnl|CDD|129605 TIGR00514, accC, acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification. Length = 449 Score = 47.4 bits (113), Expect = 2e-05 Identities = 54/263 (20%), Positives = 103/263 (39%), Gaps = 47/263 (17%) Query: 712 KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQP----RNGISHSVEHARLI 767 ++ E++ +G +SI L D+ + + + + P +G+ E I Sbjct: 90 NFAEQCERSGFTFIGPSAESIRLMGDKVSAIETMKKAGV--PCVPGSDGLVEDEEENVRI 147 Query: 768 ACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINT 827 A IG+P++I+ + GGR M++V + L + T E K + ND Sbjct: 148 AKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMT-----RAEAKAAFGNDG------ 196 Query: 828 LLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSL------- 880 + + Y+ + +++ L I+ G+ CS+ Sbjct: 197 ------VYIEKYIENPRHVEIQVLADK------------YGNAIYLGERDCSIQRRHQKL 238 Query: 881 ----PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRASRTVP 935 PS +L+ +L+ ++ A ++ G V++ + K+G+ Y +E+N R P Sbjct: 239 LEEAPSPALTPELRRKMGDAAVKAAVSIGYRGAGTVEFLLDKNGEFYFMEMNTRIQVEHP 298 Query: 936 FIAKAIGFPVAKVAARIIAGESL 958 G + K RI AGE L Sbjct: 299 VTEMITGVDLIKEQIRIAAGEPL 321 Score = 41.3 bits (97), Expect = 0.001 Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 16/189 (8%) Query: 205 MAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVE----NGLHASPTTEVLIE 260 V+ IG P+II+ + GG G + E ++ + A V IE Sbjct: 141 EEENVRIAKRIGYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIE 200 Query: 261 ESVLGWKEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQL 316 + + + E++++ D GN I + CSI+ + +PALT + Sbjct: 201 KYIENPRHVEIQVLADKYGNAIYLGERDCSIQRRHQKLLEE----APSPALTPELRRK-- 254 Query: 317 MRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIA 376 M +AA+ IG G V+F ++ KNG+ +EMN R+ + TG + K Sbjct: 255 MGDAAVKAAVSIGYRGAG-TVEFLLD-KNGEFYFMEMNTRIQVEHPVTEMITGVDLIKEQ 312 Query: 377 AKLAVGYTL 385 ++A G L Sbjct: 313 IRIAAGEPL 321 >gnl|CDD|162031 TIGR00768, rimK_fam, alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001). Length = 277 Score = 44.6 bits (106), Expect = 1e-04 Identities = 58/276 (21%), Positives = 101/276 (36%), Gaps = 43/276 (15%) Query: 669 YDIAD---RLYFESLTEEDIL--------EILRVEQQKGEL----VGIIVQFGGQTPLKL 713 YD ++ E+ E I L + EL V I+ L + Sbjct: 6 YDRIRLDEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRIVSMFRGLAV 65 Query: 714 SKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGF 773 ++ LE +P++ D+I A D+ +LL + L QPR G++ S E A + EIGF Sbjct: 66 ARYLESLGVPVI-NSSDAILNAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIGF 124 Query: 774 PLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHP 833 P++++P + GR + + + + L E Q Sbjct: 125 PVVLKPVFGSWGRLVSLARDKQAAETLL----------EHFEQLNGP--------QNLF- 165 Query: 834 LLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSR-SLSQQLKDE 892 Y+ D+ D+VI I I + + L++++++ Sbjct: 166 -YVQEYIKKPGGRDIRVFVVGDEVI--AAIYRITSGHWRTNLARGGKAEPCPLTEEIEEL 222 Query: 893 LISQTKALAGALNVIGLINVQYAIKDGKIYILEVNP 928 I KAL + I L+ +D + + EVNP Sbjct: 223 AIKAAKALGLDVVGIDLLES----EDRGLLVNEVNP 254 >gnl|CDD|169452 PRK08463, PRK08463, acetyl-CoA carboxylase subunit A; Validated. Length = 478 Score = 43.6 bits (103), Expect = 3e-04 Identities = 50/190 (26%), Positives = 85/190 (44%), Gaps = 24/190 (12%) Query: 215 IGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASP--------TTEVLIEESVLGW 266 IG P+I++ S GG G GI E E +EN + EV +E+ V+ Sbjct: 151 IGYPVILKASG--GGGGRGIRVVHKE--EDLENAFESCKREALAYFNNDEVFMEKYVVNP 206 Query: 267 KEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAI 322 + E +++ D GN I + CSI+ I +AP +++D + M A+ Sbjct: 207 RHIEFQILGDNYGNIIHLCERDCSIQR------RHQKVIEIAPCPSISDNLRKTMGVTAV 260 Query: 323 AVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVG 382 A K +G + G ++F ++ N + +EMN R+ + + TG + ++A G Sbjct: 261 AAAKAVGYTNAG-TIEFLLDDYN-RFYFMEMNTRIQVEHGVTEEITGIDLIVRQIRIAAG 318 Query: 383 YTLDELGNDI 392 LD +DI Sbjct: 319 EILDLEQSDI 328 Score = 34.4 bits (79), Expect = 0.17 Identities = 57/262 (21%), Positives = 100/262 (38%), Gaps = 76/262 (29%) Query: 715 KILEKNQIPIL-GTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGF 773 +++KN IPI+ GT+ LN S S+E ++ A +IG+ Sbjct: 120 YLMKKNGIPIVPGTEK--------------------LN------SESMEEIKIFARKIGY 153 Query: 774 PLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQ----YPNDKTGQINTLL 829 P++++ S GGR +++V+ E L++ E KR+ + ND+ Sbjct: 154 PVILKASGGGGGRGIRVVHKEEDLENAF---------ESCKREALAYFNNDE-------- 196 Query: 830 GTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSL--------- 880 + + Y+ + I+ L N I IH + CS+ Sbjct: 197 ----VFMEKYVVNPRHIEFQILGDNYGNI------------IHLCERDCSIQRRHQKVIE 240 Query: 881 --PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKD-GKIYILEVNPRASRTVPFI 937 P S+S L+ + A A A+ +++ + D + Y +E+N R Sbjct: 241 IAPCPSISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDYNRFYFMEMNTRIQVEHGVT 300 Query: 938 AKAIGFPVAKVAARIIAGESLD 959 + G + RI AGE LD Sbjct: 301 EEITGIDLIVRQIRIAAGEILD 322 >gnl|CDD|179152 PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional. Length = 513 Score = 42.4 bits (101), Expect = 7e-04 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 8/58 (13%) Query: 1036 VSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKV------LEGR 1087 +SV +DK IV + +LG +I++T GTA+ L G+ +++ V L+GR Sbjct: 9 ISV--SDKTGIVEFAKALVELGVEILSTGGTAKLLAEAGIPVTEVSDVTGFPEILDGR 64 >gnl|CDD|181436 PRK08462, PRK08462, biotin carboxylase; Validated. Length = 445 Score = 41.3 bits (97), Expect = 0.002 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 16/181 (8%) Query: 213 DEIGLPLIIRPSFTLGGTGGGIAYNRSE----FLEIVENGLHASPTTEVLIEESVLGWKE 268 EIG P+I++ + GG G + + S+ +L L A + +E+ + + Sbjct: 151 KEIGYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNPRH 210 Query: 269 YELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAV 324 E++++ D GN I V CS++ I +PA+ L +K + + AI Sbjct: 211 IEVQILGDKHGNVIHVGERDCSLQR------RHQKLIEESPAVVLDEKTRERLHETAIKA 264 Query: 325 LKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYT 384 K IG E G +F ++ N +EMN R+ ++ +G + + K+A G Sbjct: 265 AKAIGYEGAG-TFEFLLD-SNLDFYFMEMNTRLQVEHTVSEMVSGLDLIEWMIKIAEGEE 322 Query: 385 L 385 L Sbjct: 323 L 323 Score = 39.0 bits (91), Expect = 0.007 Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Query: 715 KILEKNQIPILGTQPDSIDLAEDRDRFQKLLME--LDLNQPRNGISHSVEHARLIACEIG 772 +I + I +G + + L D+ + ++++ + + +G S E A+ IA EIG Sbjct: 95 EICSHHNIKFIGPSVEVMALMSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIG 154 Query: 773 FPLLIRPSYVLGGRAMQIVYSENMLQ 798 +P++++ + GGR M++V E+ L+ Sbjct: 155 YPVILKAAAGGGGRGMRVVEDESDLE 180 >gnl|CDD|167327 PRK02186, PRK02186, argininosuccinate lyase; Provisional. Length = 887 Score = 41.0 bits (96), Expect = 0.002 Identities = 65/325 (20%), Positives = 117/325 (36%), Gaps = 37/325 (11%) Query: 188 KWNLEENDRKH------RYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEF 241 K L R H + AVA+ ALD + P++++P G G + + +E Sbjct: 108 KKRLARTLRDHGIDVPRTHALALRAVALDALDGLTYPVVVKPRMGSGSVGVRLCASVAEA 167 Query: 242 LEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDSI 301 A T L++ V G EY +E + +G+ ++ + ++L P H + Sbjct: 168 AAHCAALRRAG-TRAALVQAYVEG-DEYSVETLTVARGHQVLGITRKHLGPPP-HFVEIG 224 Query: 302 TVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS- 360 PA + +++R A L +G G A+ + V + +V+IE+NPR++ Sbjct: 225 HDFPAPLSAPQRERIVRTVLRA-LDAVGYAFGPAHTELRV--RGDTVVIIEINPRLAGGM 281 Query: 361 -SALASKATGFPIAKIAAKL----------------AVGYTLDELGNDITGGKTPASFEP 403 L +A G + L A+ + L + G F P Sbjct: 282 IPVLLEEAFGVDLLDHVIDLHLGVAAFADPTAKRYGAIRFVLPARSGVLRG----LLFLP 337 Query: 404 SIDYIVTKIPRFTFEKFPGSDVTLTTSMKS-VGEVMAIGRTFAESLQKALRGLETGLTGL 462 ++ RF K PG + L + + V+ G A R + + Sbjct: 338 DDIAARPEL-RFHPLKQPGDALRLEGDFRDRIAAVVCAGDHRDSVAAAAERAVAGLSIDI 396 Query: 463 DEIHIPSMESDNDPNALRSAISIPC 487 + + +D A R + P Sbjct: 397 GDAARAAALNDAGAGAARPGLP-PE 420 Score = 32.9 bits (75), Expect = 0.53 Identities = 54/308 (17%), Positives = 103/308 (33%), Gaps = 59/308 (19%) Query: 726 GTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGG 785 ++I D+ R + L + ++ PR A + +P++++P G Sbjct: 96 AANTEAIRTCRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGLTYPVVVKPRMGSGS 155 Query: 786 RAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAME 845 +++ S ++R GT L +Y+ + E Sbjct: 156 VGVRLCASV----AEAAAH-----CAALRR-------------AGTRAALVQAYV-EGDE 192 Query: 846 IDVDALCQNDQVIVVGIIE-------HIEEAGIHSGDSACSLPSRSLSQQLKDELISQTK 898 V+ L V+GI H E G H + S P R + ++ Sbjct: 193 YSVETLTVARGHQVLGITRKHLGPPPHFVEIG-HDFPAPLSAPQR-------ERIVRTVL 244 Query: 899 ALAGALNVIGL----INVQYAIKDGKIYILEVNPR-ASRTVP-FIAKAIGFPVAKVAARI 952 AL+ +G + + ++ + I+E+NPR A +P + +A G + + Sbjct: 245 ---RALDAVGYAFGPAHTELRVRGDTVVIIEINPRLAGGMIPVLLEEAFGVDLLDHVIDL 301 Query: 953 IAGESLDASIAAYGKRPDLSQIKHFAV--KESVFPFNKFPGVDILLGPEMR-----STGE 1005 G + A F + + V F DI PE+R G+ Sbjct: 302 HLGVAAFA-----DPTAKRYGAIRFVLPARSGVLRGLLFLPDDIAARPELRFHPLKQPGD 356 Query: 1006 VIGIDQDF 1013 + ++ DF Sbjct: 357 ALRLEGDF 364 >gnl|CDD|180406 PRK06111, PRK06111, acetyl-CoA carboxylase biotin carboxylase subunit; Validated. Length = 450 Score = 40.4 bits (95), Expect = 0.003 Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 41/211 (19%) Query: 760 SVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPN 819 E A IA +IG+P++++ S GG MQ+V +E L + + Sbjct: 140 DAEEAIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAF-----ESNKKRAANFF-- 192 Query: 820 DKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACS 879 G + + Y+ D I++ L + ++ + CS Sbjct: 193 ----------GNGEMYIEKYIEDPRHIEIQLLADTH--------GNT----VYLWERECS 230 Query: 880 L-----------PSRSLSQQLKDELISQTKALAGALNVIGLINVQYAIKDGK-IYILEVN 927 + PS L ++ + + + A A+ +++ + + K Y LE+N Sbjct: 231 VQRRHQKVIEEAPSPFLDEETRKAMGERAVQAAKAIGYTNAGTIEFLVDEQKNFYFLEMN 290 Query: 928 PRASRTVPFIAKAIGFPVAKVAARIIAGESL 958 R P + G + + RI AGE L Sbjct: 291 TRLQVEHPVTEEITGIDLVEQQLRIAAGEKL 321 Score = 38.5 bits (90), Expect = 0.011 Identities = 62/278 (22%), Positives = 113/278 (40%), Gaps = 43/278 (15%) Query: 208 AVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVE-NGLHASP---TTEVLIEESV 263 A+ +IG P++++ S GG G + E + E N A+ E+ IE+ + Sbjct: 144 AIAIARQIGYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYI 203 Query: 264 LGWKEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRN 319 + E++++ D GN + + CS++ I AP+ L ++ + M Sbjct: 204 EDPRHIEIQLLADTHGNTVYLWERECSVQR------RHQKVIEEAPSPFLDEETRKAMGE 257 Query: 320 AAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKL 379 A+ K IG + G ++F V+ + +EMN R+ + + TG + + ++ Sbjct: 258 RAVQAAKAIGYTNAG-TIEFLVD-EQKNFYFLEMNTRLQVEHPVTEEITGIDLVEQQLRI 315 Query: 380 AVGYTLDELGNDITG----------GKTPASFEPSIDYIVTKIPRFTFEKFPG------- 422 A G L +DI + P +F PS KI T G Sbjct: 316 AAGEKLSFTQDDIKRSGHAIEVRIYAEDPKTFFPS----PGKITDLTLPGGEGVRHDHAV 371 Query: 423 -SDVTLTT---SMKSVGEVMAIGRTFAESLQKALRGLE 456 + VT+T M + +++A G T E++ + LE Sbjct: 372 ENGVTVTPFYDPM--IAKLIAHGETREEAISRLHDALE 407 >gnl|CDD|181492 PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated. Length = 451 Score = 39.4 bits (93), Expect = 0.006 Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%) Query: 716 ILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQP----RNGISHSVEHARLIACEI 771 I E + +G ++I L D+ + + + + P +G E A IA EI Sbjct: 94 ICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGV--PVVPGSDGPVDDEEEALAIAKEI 151 Query: 772 GFPLLIRPSYVLGGRAMQIVYSE 794 G+P++I+ + GGR M++V +E Sbjct: 152 GYPVIIKATAGGGGRGMRVVRTE 174 Score = 33.2 bits (77), Expect = 0.35 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 56/180 (31%) Query: 204 AMAVAVQALDEIGLPLIIRPSFTLGGTGGGI--AYNRSEFLEIVE-----------NGLH 250 A+A+A EIG P+II+ T GG G G+ +E + N Sbjct: 144 ALAIA----KEIGYPVIIKA--TAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNP-- 195 Query: 251 ASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVV----CSI---------ENLDPMGVHT 297 V +E+ + + E++++ D GN I + CS+ E Sbjct: 196 -----GVYMEKYLENPRHIEIQVLADGHGNAIHLGERDCSLQRRHQKVLEE--------- 241 Query: 298 GDSITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRV 357 AP+ +T++ + + AA+ K IG G ++F KNG+ IEMN R+ Sbjct: 242 ------APSPAITEELRRKIGEAAVKAAKAIGYRGAG-TIEFLYE-KNGEFYFIEMNTRI 293 >gnl|CDD|162983 TIGR02712, urea_carbox, urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. Length = 1201 Score = 37.7 bits (88), Expect = 0.018 Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 54/196 (27%) Query: 753 PRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEE 812 P G+ S++ A A EIG+P++++ + GG MQ S L + E Sbjct: 131 PGTGLLSSLDEALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAF---------ET 181 Query: 813 IKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQNDQVI------VVGIIEHI 866 +KR G+ G + + ++ +A ++V Q+ VV + Sbjct: 182 VKRL------GESF--FGDAGVFLERFVENARHVEV-------QIFGDGKGKVVAL---- 222 Query: 867 EEAGIHSGDSACSL-----------PSRSLSQQLKDELISQTKALAGALNVIGLINVQ-- 913 G+ CSL P+ +L + + L++ + L A+N V+ Sbjct: 223 -------GERDCSLQRRNQKVVEETPAPNLPPETRQALLAAAERLGEAVNYRSAGTVEFI 275 Query: 914 YAIKDGKIYILEVNPR 929 Y + Y LEVN R Sbjct: 276 YDEARDEFYFLEVNTR 291 Score = 34.2 bits (79), Expect = 0.21 Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 15/157 (9%) Query: 208 AVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPT----TEVLIEESV 263 A++A EIG P++++ + GG G + +E E E + V +E V Sbjct: 142 ALEAAKEIGYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFV 201 Query: 264 LGWKEYELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRN 319 + E+++ D KG + + CS++ + V PA L + Q + Sbjct: 202 ENARHVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEE------TPAPNLPPETRQALLA 255 Query: 320 AAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPR 356 AA + + + S G V+F + + +E+N R Sbjct: 256 AAERLGEAVNYRSAGT-VEFIYDEARDEFYFLEVNTR 291 >gnl|CDD|184454 PRK14016, PRK14016, cyanophycin synthetase; Provisional. Length = 727 Score = 37.4 bits (88), Expect = 0.024 Identities = 15/49 (30%), Positives = 27/49 (55%) Query: 733 DLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPSY 781 D+A D++ ++LL + P + S E A A EIG+P++++P Sbjct: 210 DIACDKELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEIGYPVVVKPLD 258 >gnl|CDD|161835 TIGR00355, purH, phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region. Length = 511 Score = 36.0 bits (83), Expect = 0.061 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 1042 DKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKVLEGRPHIED 1092 DK IV Q + G ++++T GTA+ L G+ +++ G P + D Sbjct: 9 DKTGIVEFAQGLVERGVELLSTGGTAKLLAEAGVPVTEVSDY-TGFPEMMD 58 >gnl|CDD|173033 PRK14569, PRK14569, D-alanyl-alanine synthetase A; Provisional. Length = 296 Score = 35.4 bits (81), Expect = 0.092 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 10/146 (6%) Query: 211 ALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGL-HASPTTEVLIEESVLGWKEY 269 A DEI P+ ++PS G IA + + ++ +++ AS EV+IE+ V G KE Sbjct: 125 AEDEISFPVAVKPS----SGGSSIATFKVKSIQELKHAYEEASKYGEVMIEQWVTG-KEI 179 Query: 270 ELEMMR-DIKGNCIVVCSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVLKEI 328 + ++ ++ + + E D ++G SI +P+ KE ++ R A + Sbjct: 180 TVAIVNDEVYSSVWIEPQNEFYDYESKYSGKSIYHSPSGLCEQKELEV-RQLAKKAYDLL 238 Query: 329 GVESGGANVQFAVNPKNGKMVVIEMN 354 G SG A V F + + G ++E+N Sbjct: 239 GC-SGHARVDFIYDDR-GNFYIMEIN 262 >gnl|CDD|131199 TIGR02144, LysX_arch, Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues. Length = 280 Score = 34.3 bits (79), Expect = 0.19 Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 1/81 (1%) Query: 699 VGIIVQFGGQTPLKLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGIS 758 V II L +++LE +P++ I+ D+ L + + PR ++ Sbjct: 50 VAIIRCVSQSRALYSARLLEALGVPVI-NSSHVIEACGDKIFTYLKLAKAGVPTPRTYLA 108 Query: 759 HSVEHARLIACEIGFPLLIRP 779 E A +A +G+P++++P Sbjct: 109 FDREAALKLAEALGYPVVLKP 129 >gnl|CDD|161937 TIGR00577, fpg, formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 272 Score = 33.4 bits (77), Expect = 0.30 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 305 PALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPK--NGKM 348 A +L+ +E +L+ A VL++ +E GG ++ N NG Sbjct: 190 LANSLSKEECELLHRAIKEVLRK-AIEMGGTTIRDYSNSDGHNGYF 234 >gnl|CDD|100572 PRK00478, scpA, segregation and condensation protein A/unknown domain fusion protein; Provisional. Length = 505 Score = 33.4 bits (76), Expect = 0.39 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%) Query: 673 DRLYFESLTEEDI-LEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKNQIPI 724 ++L ++LT ++I +E L +EQ + E++ II QF + L ++L K I Sbjct: 325 EKLKIKTLTNKNIVIEELSIEQVQNEILSIIKQFLYNQ-VSLKRVLLKINHKI 376 >gnl|CDD|178479 PLN02891, PLN02891, IMP cyclohydrolase. Length = 547 Score = 33.2 bits (76), Expect = 0.45 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 11/69 (15%) Query: 1041 ADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKINKV------LEGR-----PH 1089 +DK + + ++LG+ I++T GTA LE+ G+ K+ ++ L+GR P Sbjct: 30 SDKTDLALLANGLQELGYTIVSTGGTASALEAAGVSVTKVEELTNFPEMLDGRVKTLHPA 89 Query: 1090 IEDAISNRQ 1098 + I R+ Sbjct: 90 VHGGILARR 98 >gnl|CDD|182468 PRK10446, PRK10446, ribosomal protein S6 modification protein; Provisional. Length = 300 Score = 32.6 bits (74), Expect = 0.58 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 47/237 (19%) Query: 721 QIPILGTQP--DSIDLAEDRDRFQ--KLLMELDLNQPRNGISHSVEH-ARLIACEIGFPL 775 Q +LG+ P +S+ +A RD+ + +LL ++ P GI+HS + + LI G PL Sbjct: 79 QFEMLGSYPLNESVAIARARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPL 138 Query: 776 LIRPSYVLGGRAMQIVYSEN-MLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPL 834 +++ V G + + +V +E + ++D GL + + Sbjct: 139 VVK--LVEGTQGIGVVLAETRQAAESVIDAFRGLNAH----------------------I 174 Query: 835 LFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAG-----IHSGDSACSLPSRSLSQQL 889 L Y+ +A D+ L D+ VV IE + G +H G +A S++ Q Sbjct: 175 LVQEYIKEAQGCDIRCLVVGDE--VVAAIERRAKEGDFRSNLHRGGAASVA---SITPQE 229 Query: 890 KDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVA 946 ++ I + + AL+V G +++ A G + ++EVN AS + I K G +A Sbjct: 230 REIAIKAARTM--ALDVAG-VDILRA-NRGPL-VMEVN--ASPGLEGIEKTTGIDIA 279 >gnl|CDD|162248 TIGR01205, D_ala_D_alaTIGR, D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model. Length = 315 Score = 32.6 bits (75), Expect = 0.59 Identities = 54/255 (21%), Positives = 99/255 (38%), Gaps = 43/255 (16%) Query: 716 ILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPR----NGISHSVEHARLIACE- 770 +LE IP G+ + L+ D+ + L L L P S + Sbjct: 84 LLELMGIPYTGSGVLASALSMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAE 143 Query: 771 -IGFPLLIRPSYVLGGR-AMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTL 828 +GFP++++P+ G + V SE LQ L + EE+ Sbjct: 144 PLGFPVIVKPA-REGSSVGVSKVKSEEELQAALDEAFE--YDEEV--------------- 185 Query: 829 LGTHPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIE-----EAGIHSGDSACSLPSR 883 L + ++ E++V L + + ++ I+ IE EA + S + Sbjct: 186 ------LVEQFIK-GRELEVSILGNEEALPIIEIVPEIEGFYDYEAK-YLDGSTEYVIPA 237 Query: 884 SLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRASRT----VPFIA 938 L ++L++++ AL GL V + + ++G+IY+ E+N T P A Sbjct: 238 PLDEELEEKIKELALKAYKALGCRGLARVDFFLDEEGEIYLNEINTIPGMTAISLFPKAA 297 Query: 939 KAIGFPVAKVAARII 953 A G +++ RI+ Sbjct: 298 AAAGIEFSQLVERIL 312 >gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions. Length = 864 Score = 32.1 bits (73), Expect = 0.82 Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 15/85 (17%) Query: 700 GIIVQFGGQTPLKLSKILEKNQIPILGTQPD-----SIDLAEDRDRFQKLLMELDLNQPR 754 G +VQ G Q I T+ D ++++A D+D +++L + + P Sbjct: 181 GSLVQLG----------YGSRQKRIQATETDRTSAIAVEIACDKDLTKEILSDAGVPVPE 230 Query: 755 NGISHSVEHARLIACEIGFPLLIRP 779 + S E A A ++G+P++I+P Sbjct: 231 GTVVQSAEDAWEAAQDLGYPVVIKP 255 >gnl|CDD|162665 TIGR02025, BchH, magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring. Length = 1216 Score = 31.7 bits (72), Expect = 1.3 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%) Query: 1065 GTARFLESHGLET-QKINKVLEGRPHIED-----AISNRQVHLVINTTE----GKKAIED 1114 R LE+ GL+ + L+GR +ED + + +V V++ T G A D Sbjct: 261 NLIRELEAAGLQVVPAFSGGLDGRVAVEDFFMKDSTPSVKVDAVVSLTGFSLVGGPAGSD 320 Query: 1115 SKSLRRATLIRKIPYYTTIAGADAVFQAIQALKAGNLEVHSLQS 1158 + + +PY I +FQ I++ A +L + LQ Sbjct: 321 AAAAVEILKGLDVPY---IVAIPLLFQTIESWTASDLGLGPLQV 361 >gnl|CDD|179423 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional. Length = 435 Score = 30.1 bits (69), Expect = 3.2 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%) Query: 489 DRLRTVAQALR-LGVSVEETH 508 DR+ +A LR LG VEET Sbjct: 351 DRIAAMATELRKLGAEVEETE 371 >gnl|CDD|117020 pfam08443, RimK, RimK-like ATP-grasp domain. This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK. Length = 190 Score = 30.1 bits (68), Expect = 3.5 Identities = 41/200 (20%), Positives = 77/200 (38%), Gaps = 39/200 (19%) Query: 735 AEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEI-GFPLLIRPSYVLGGRAMQIVYS 793 A D+ + +LL + + P G++ S E A +I GFP++++ + G + + Sbjct: 1 ARDKAKSHQLLAKHGIPVPNTGLAWSPEDAEKFIEQIKGFPVVVKSVFGSQGIGVFLAED 60 Query: 794 ENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALCQ 853 E L+ LL+ L + +L ++++A D+ L Sbjct: 61 EQSLEQ-LLEAFKWL----------------------KNQILVQEFIAEAGNRDIRCLVV 97 Query: 854 NDQVIVVGIIEHIEEAG-----IHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIG 908 + VVG I G +H G A LSQ+ ++ I +A+ + + Sbjct: 98 GGE--VVGAIHRQSNEGDFRTNLHRGGVAEPY---QLSQEEEEIAIKAAQAMGLDVLGVD 152 Query: 909 LINVQYAIKDGKIYILEVNP 928 + K G + + EVN Sbjct: 153 IFRS----KRG-LLVCEVNS 167 >gnl|CDD|130212 TIGR01142, purT, phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639). Length = 380 Score = 30.1 bits (68), Expect = 3.7 Identities = 38/198 (19%), Positives = 74/198 (37%), Gaps = 25/198 (12%) Query: 734 LAEDRDRFQKLLME-LDLNQPRNGISHSVEHARLIACEIGFPLLIRPSYVLGGRAMQIVY 792 L +R+ ++L E L L R + S++ R +IG+P +++P G+ +V Sbjct: 97 LTMNREGIRRLAAEELGLPTSRYMFADSLDELREAVEKIGYPCVVKPVMSSSGKGQSVVR 156 Query: 793 SENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEIDVDALC 852 ++ + Q G ++ + ++ EI + + Sbjct: 157 GPEDIE-------------------KAWEYAQEGARGGAGRVIVEEFIDFDYEITLLTVR 197 Query: 853 QND-QVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLIN 911 D I H + GD S + +S++ +E K + AL GL Sbjct: 198 HVDGNTTFCAPIGHRQI----DGDYHESWQPQEMSEKALEEAQRIAKRITDALGGYGLFG 253 Query: 912 VQYAIKDGKIYILEVNPR 929 V+ +K ++ EV+PR Sbjct: 254 VELFVKGDEVIFSEVSPR 271 >gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional. Length = 405 Score = 29.8 bits (67), Expect = 3.9 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 6/32 (18%) Query: 30 GTQACKALKEEGYRIILVNSNPATIMTDPDLA 61 GT + K++GY + P M + DLA Sbjct: 270 GTFEKPSEKKKGYVL------PRAKMVNADLA 295 >gnl|CDD|130495 TIGR01428, HAD_type_II, 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related. Length = 198 Score = 29.6 bits (67), Expect = 4.5 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Query: 32 QACKALKEEGYRI-ILVNSNPATIM 55 +ALKE GYR+ IL N +PA + Sbjct: 99 AGLRALKERGYRLAILSNGSPAMLK 123 >gnl|CDD|184488 PRK14072, PRK14072, 6-phosphofructokinase; Provisional. Length = 416 Score = 29.4 bits (67), Expect = 4.8 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 8/66 (12%) Query: 331 ESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAK---LAVGYTLDE 387 G A V++A+ KNG M I R S K P++K+A K + + ++E Sbjct: 315 AVGKAAVEYALAGKNGVMPAIR---RTS-DDPYKWKIGLVPLSKVANKEKKMPPEF-INE 369 Query: 388 LGNDIT 393 GN IT Sbjct: 370 DGNGIT 375 >gnl|CDD|152250 pfam11814, DUF3335, Domain of unknown function (DUF3335). This family of proteins are functionally uncharacterized. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length. Length = 228 Score = 29.5 bits (67), Expect = 5.7 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Query: 1015 LAFAKSQLGIGVDL--PHEGTVFV-SVRDADKKRIVPIIQN 1052 LA A + G V++ +G +F+ SVR +KK ++ ++ Sbjct: 79 LALAAHRRGFEVEVYVSTDGPLFLDSVRSENKKEVMRLVHE 119 >gnl|CDD|139472 PRK13302, PRK13302, putative L-aspartate dehydrogenase; Provisional. Length = 271 Score = 29.4 bits (66), Expect = 5.9 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 8/73 (10%) Query: 96 LNTALSLKRMGV-LDRYGVEMIGAKP------ETIDKAEDRSLFSKAMQNIPLATPKSIL 148 LN A++L G+ DR +E I A P I+ D + FS ++NIP PK+ Sbjct: 192 LNVAVALSLAGIGPDRTTLE-IWADPGVTRNVHRIEVDADSARFSMTIENIPSENPKTGR 250 Query: 149 ANATDIKEHDRKL 161 A + RK Sbjct: 251 ITAQSVIALLRKQ 263 >gnl|CDD|178291 PLN02688, PLN02688, pyrroline-5-carboxylate reductase. Length = 266 Score = 29.2 bits (66), Expect = 6.5 Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 337 VQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKI 375 + AV P+ K V+ E+ P +S+ L S A G +A + Sbjct: 65 IILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLADL 103 >gnl|CDD|179229 PRK01122, PRK01122, potassium-transporting ATPase subunit B; Provisional. Length = 679 Score = 29.0 bits (66), Expect = 7.0 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 10/58 (17%) Query: 648 LKEAGFETIMINC-NPETVSTDYDIA-----DRLYFESLTEEDILEILRVEQQKGELV 699 L++ G +T+MI NP T + IA D E+ T ED L ++R EQ +G LV Sbjct: 457 LRKMGIKTVMITGDNPLTAAA---IAAEAGVDDFLAEA-TPEDKLALIRQEQAEGRLV 510 >gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280 Score = 29.0 bits (65), Expect = 7.1 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 13/101 (12%) Query: 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEG-YRIILVNSNPATIMTDPDLADATYT 66 + +L++GAG + G A A G R++ + +P Sbjct: 122 RRVLVVGAGML-----------GLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALA 170 Query: 67 EPITP-EVVAKIIEKERPDAILPTTGGQTALNTALSLKRMG 106 EP E + D L +G A+ L +G Sbjct: 171 EPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG 211 >gnl|CDD|181191 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated. Length = 647 Score = 29.1 bits (66), Expect = 7.3 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 11/81 (13%) Query: 31 TQACKALKEEGYRIILVN--SNPATIMTDPDLADATYTEPITPEVVAKIIE--KERPD-- 84 K+E YR N + P TPE+ AK+ ER Sbjct: 468 ALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAAEAIERDPWA 527 Query: 85 AILPTTG-----GQTALNTAL 100 A++ G Q ALN Sbjct: 528 ALVSQLGLPGLVEQLALNAWK 548 >gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site. Length = 340 Score = 29.1 bits (65), Expect = 7.9 Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 9/117 (7%) Query: 8 KTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYTE 67 K++L+ GAGPI + SG YR+ L AT + +P D Sbjct: 163 KSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVV--- 219 Query: 68 PITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKPETID 124 + VA + + E D L +G AL L G R + + TID Sbjct: 220 ----KEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG--GRVSLLGLPPGKVTID 270 >gnl|CDD|173034 PRK14570, PRK14570, D-alanyl-alanine synthetase A; Provisional. Length = 364 Score = 29.0 bits (65), Expect = 8.2 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 196 RKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVENGLHASPTT 255 RK+ Y + + +G P+I++P+ G +AYN ++ + +E T Sbjct: 151 RKYDYFLDKEGIKKDIKEVLGYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAFKYDLT- 209 Query: 256 EVLIEE 261 V+IE+ Sbjct: 210 -VVIEK 214 >gnl|CDD|130247 TIGR01179, galE, UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. Length = 328 Score = 28.8 bits (65), Expect = 9.4 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 22/74 (29%) Query: 28 YSGTQACKALKEEGYRII----LVNSNPATI-----MTDP-----DLADATYTEPITPEV 73 Y G+ + L E G+ ++ L N +P + +T DL D E+ Sbjct: 10 YIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDR--------EL 61 Query: 74 VAKIIEKERPDAIL 87 + ++ E+ + DA++ Sbjct: 62 LDRLFEEHKIDAVI 75 >gnl|CDD|180147 PRK05583, PRK05583, ribosomal protein L7Ae family protein; Provisional. Length = 104 Score = 28.5 bits (64), Expect = 9.7 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%) Query: 1068 RFLESHGLETQKINKVLEGRPHIEDAISNRQVHLVI 1103 +FL GL T+K K+LEG E+AI ++V+L+I Sbjct: 4 KFLNFLGL-TKKAGKLLEGYNKCEEAIKKKKVYLII 38 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.136 0.386 Gapped Lambda K H 0.267 0.0635 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 19,307,640 Number of extensions: 1327161 Number of successful extensions: 3473 Number of sequences better than 10.0: 1 Number of HSP's gapped: 3373 Number of HSP's successfully gapped: 99 Length of query: 1162 Length of database: 5,994,473 Length adjustment: 104 Effective length of query: 1058 Effective length of database: 3,747,241 Effective search space: 3964580978 Effective search space used: 3964580978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 63 (28.2 bits)