BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] (1162 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 1162 Score = 2390 bits (6193), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1162/1162 (100%), Positives = 1162/1162 (100%) Query: 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDL 60 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDL Sbjct: 1 MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDL 60 Query: 61 ADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKP 120 ADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKP Sbjct: 61 ADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKP 120 Query: 121 ETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDA 180 ETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDA Sbjct: 121 ETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDA 180 Query: 181 ALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE 240 ALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE Sbjct: 181 ALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE 240 Query: 241 FLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDS 300 FLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDS Sbjct: 241 FLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDS 300 Query: 301 ITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS 360 ITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS Sbjct: 301 ITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS 360 Query: 361 SALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKF 420 SALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKF Sbjct: 361 SALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKF 420 Query: 421 PGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALR 480 PGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALR Sbjct: 421 PGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALR 480 Query: 481 SAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDF 540 SAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDF Sbjct: 481 SAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDF 540 Query: 541 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST Sbjct: 541 QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600 Query: 601 YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC 660 YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC Sbjct: 601 YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC 660 Query: 661 NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN 720 NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN Sbjct: 661 NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN 720 Query: 721 QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPS 780 QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPS Sbjct: 721 QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPS 780 Query: 781 YVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL 840 YVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL Sbjct: 781 YVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL 840 Query: 841 SDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKAL 900 SDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKAL Sbjct: 841 SDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKAL 900 Query: 901 AGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960 AGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA Sbjct: 901 AGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960 Query: 961 SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKS 1020 SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKS Sbjct: 961 SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKS 1020 Query: 1021 QLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKI 1080 QLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKI Sbjct: 1021 QLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKI 1080 Query: 1081 NKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGADAVF 1140 NKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGADAVF Sbjct: 1081 NKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGADAVF 1140 Query: 1141 QAIQALKAGNLEVHSLQSYRYN 1162 QAIQALKAGNLEVHSLQSYRYN Sbjct: 1141 QAIQALKAGNLEVHSLQSYRYN 1162 >gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 443 Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 42/230 (18%) Query: 712 KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQ-PRNGISHSVEHARLIACE 770 K ++ILE + I +G + I + D+ +K +L + P +G + A IA E Sbjct: 90 KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKE 148 Query: 771 IGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLG 830 IGFP+L++ S GGR M+I YSEN L + + + + G Sbjct: 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAI-----------------DQARSEALAAFG 191 Query: 831 THPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRS------ 884 + + YL + I+V Q+ G+ IH G+ CS+ R+ Sbjct: 192 NDAVYIEKYLENPRHIEV-------QIFGDGM-----GNAIHFGERDCSVQRRNQKIWEE 239 Query: 885 -----LSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPR 929 +S Q + E+ ++ G +++ ++G+ Y +E+N R Sbjct: 240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTR 289 Score = 41.6 bits (96), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 17/188 (9%) Query: 214 EIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVEN----GLHASPTTEVLIEESVLGWKEY 269 EIG P++++ S GG G IAY+ ++ E ++ L A V IE+ + + Sbjct: 148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI 207 Query: 270 ELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVL 325 E+++ D GN I CS++ + S P ++ D+ + + + Sbjct: 208 EVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHS----PVISAQDR--TEIGETCVKAM 261 Query: 326 KEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTL 385 K+I G ++F +NG+ IEMN R+ + TG + +A L Sbjct: 262 KKIDYR-GAGTIEFLY--ENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL 318 Query: 386 DELGNDIT 393 DIT Sbjct: 319 SVQQKDIT 326 >gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 896 Score = 28.9 bits (63), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Query: 576 LHPVFKCVDTCAGEFSSPTSYMYS-TYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQG 634 +H K +D G S SY +S +F P D + R IV+LGG P I Sbjct: 65 IHAFVKWLDN-KGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPL 123 Query: 635 IEFDYCCCHA 644 + D H+ Sbjct: 124 VPVDLVIDHS 133 >gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus Liberibacter asiaticus str. psy62] Length = 219 Score = 27.7 bits (60), Expect = 1.1, Method: Compositional matrix adjust. Identities = 12/39 (30%), Positives = 21/39 (53%) Query: 105 MGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLAT 143 M L+RYGV+ I AK + + +++F + +P T Sbjct: 124 MSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANT 162 >gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 26.9 bits (58), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 5/45 (11%) Query: 772 GFPLLIRPSY--VLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIK 814 GF +I+P + G+++Q V E L+DYL++ +SEEI+ Sbjct: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ---SLSEEIE 573 >gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 236 Score = 26.6 bits (57), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/52 (28%), Positives = 29/52 (55%) Query: 134 KAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYAL 185 +A++ ++TP IL+ + I++ R L + + K +KEEL A + A+ Sbjct: 64 RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115 >gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 354 Score = 26.2 bits (56), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 8/123 (6%) Query: 814 KRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEID-VDALCQNDQVIVVGIIEHIEEAGI- 871 K + ND T + LG PL+ + + EI + A N + I++ GI Sbjct: 154 KVYHENDCTQNLYASLGNVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVNGIL 213 Query: 872 HSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRA 930 H S+ S+SQ+ S + + L+ +G++ +++ + DG + E+ PR Sbjct: 214 HK-----SIVPASISQKTSLLAHSAMRKVLETLDYVGILCIEFFVTNDGNVIANEMAPRV 268 Query: 931 SRT 933 + Sbjct: 269 HNS 271 >gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 25.4 bits (54), Expect = 5.5, Method: Compositional matrix adjust. Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 980 KESVFPFNKFPGVDILLGPEMRSTGEV 1006 KE+V + + D+ GP +RSTG+V Sbjct: 168 KENVTLYRQGEWFDLCRGPHVRSTGQV 194 >gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 518 Score = 25.4 bits (54), Expect = 5.6, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 755 NGISHSVEHARLIACEIGFPLL 776 +G HS +A++ A EIG PL+ Sbjct: 433 SGTDHSFRYAQIQAVEIGLPLI 454 >gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus str. psy62] Length = 523 Score = 24.6 bits (52), Expect = 8.2, Method: Compositional matrix adjust. Identities = 14/41 (34%), Positives = 23/41 (56%) Query: 902 GALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIG 942 G+L V G I+V+YA K + +++ + R S FI +G Sbjct: 444 GSLTVDGWIDVRYASKLFGVNLVDEDDRYSTLAGFILWRLG 484 >gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Candidatus Liberibacter asiaticus str. psy62] Length = 536 Score = 24.6 bits (52), Expect = 9.5, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%) Query: 1033 TVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGL------ETQKINKVLEG 1086 T +SV + K +V G KI++T GT + LE G+ + K +++ G Sbjct: 18 TALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75 Query: 1087 R 1087 R Sbjct: 76 R 76 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.136 0.386 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 720,547 Number of Sequences: 1233 Number of extensions: 30544 Number of successful extensions: 133 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 107 Number of HSP's gapped (non-prelim): 17 length of query: 1162 length of database: 328,796 effective HSP length: 84 effective length of query: 1078 effective length of database: 225,224 effective search space: 242791472 effective search space used: 242791472 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 44 (21.6 bits)