BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase
large subunit [Candidatus Liberibacter asiaticus str. psy62]
         (1162 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1162

 Score = 2390 bits (6193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1162/1162 (100%), Positives = 1162/1162 (100%)

Query: 1    MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDL 60
            MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDL
Sbjct: 1    MPKRQDLKTLLIIGAGPIVIGQACEFDYSGTQACKALKEEGYRIILVNSNPATIMTDPDL 60

Query: 61   ADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKP 120
            ADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKP
Sbjct: 61   ADATYTEPITPEVVAKIIEKERPDAILPTTGGQTALNTALSLKRMGVLDRYGVEMIGAKP 120

Query: 121  ETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDA 180
            ETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDA
Sbjct: 121  ETIDKAEDRSLFSKAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDA 180

Query: 181  ALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE 240
            ALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE
Sbjct: 181  ALYALELKWNLEENDRKHRYICHAMAVAVQALDEIGLPLIIRPSFTLGGTGGGIAYNRSE 240

Query: 241  FLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDS 300
            FLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDS
Sbjct: 241  FLEIVENGLHASPTTEVLIEESVLGWKEYELEMMRDIKGNCIVVCSIENLDPMGVHTGDS 300

Query: 301  ITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS 360
            ITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS
Sbjct: 301  ITVAPALTLTDKEYQLMRNAAIAVLKEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRS 360

Query: 361  SALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKF 420
            SALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKF
Sbjct: 361  SALASKATGFPIAKIAAKLAVGYTLDELGNDITGGKTPASFEPSIDYIVTKIPRFTFEKF 420

Query: 421  PGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALR 480
            PGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALR
Sbjct: 421  PGSDVTLTTSMKSVGEVMAIGRTFAESLQKALRGLETGLTGLDEIHIPSMESDNDPNALR 480

Query: 481  SAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDF 540
            SAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDF
Sbjct: 481  SAISIPCPDRLRTVAQALRLGVSVEETHQSSNIDPWFIQQIKMIVDVEHRIREHGLPKDF 540

Query: 541  QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600
            QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST
Sbjct: 541  QNLQAIKAMGFSDARLSILSGIPCNEIRKIRHQMGLHPVFKCVDTCAGEFSSPTSYMYST 600

Query: 601  YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC 660
            YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC
Sbjct: 601  YETNFINKPVSEDKVSDRKKIVILGGGPNRIGQGIEFDYCCCHASFSLKEAGFETIMINC 660

Query: 661  NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN 720
            NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN
Sbjct: 661  NPETVSTDYDIADRLYFESLTEEDILEILRVEQQKGELVGIIVQFGGQTPLKLSKILEKN 720

Query: 721  QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPS 780
            QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPS
Sbjct: 721  QIPILGTQPDSIDLAEDRDRFQKLLMELDLNQPRNGISHSVEHARLIACEIGFPLLIRPS 780

Query: 781  YVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL 840
            YVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL
Sbjct: 781  YVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLGTHPLLFDSYL 840

Query: 841  SDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKAL 900
            SDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKAL
Sbjct: 841  SDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRSLSQQLKDELISQTKAL 900

Query: 901  AGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960
            AGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA
Sbjct: 901  AGALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIGFPVAKVAARIIAGESLDA 960

Query: 961  SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKS 1020
            SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKS
Sbjct: 961  SIAAYGKRPDLSQIKHFAVKESVFPFNKFPGVDILLGPEMRSTGEVIGIDQDFPLAFAKS 1020

Query: 1021 QLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKI 1080
            QLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKI
Sbjct: 1021 QLGIGVDLPHEGTVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGLETQKI 1080

Query: 1081 NKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGADAVF 1140
            NKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGADAVF
Sbjct: 1081 NKVLEGRPHIEDAISNRQVHLVINTTEGKKAIEDSKSLRRATLIRKIPYYTTIAGADAVF 1140

Query: 1141 QAIQALKAGNLEVHSLQSYRYN 1162
            QAIQALKAGNLEVHSLQSYRYN
Sbjct: 1141 QAIQALKAGNLEVHSLQSYRYN 1162


>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 443

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 42/230 (18%)

Query: 712 KLSKILEKNQIPILGTQPDSIDLAEDRDRFQKLLMELDLNQ-PRNGISHSVEHARLIACE 770
           K ++ILE + I  +G   + I +  D+   +K   +L +   P +G  +    A  IA E
Sbjct: 90  KFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYP-HTAMPIAKE 148

Query: 771 IGFPLLIRPSYVLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIKRQYPNDKTGQINTLLG 830
           IGFP+L++ S   GGR M+I YSEN L + +                 +    +     G
Sbjct: 149 IGFPVLVKASAGGGGRGMRIAYSENDLSEAI-----------------DQARSEALAAFG 191

Query: 831 THPLLFDSYLSDAMEIDVDALCQNDQVIVVGIIEHIEEAGIHSGDSACSLPSRS------ 884
              +  + YL +   I+V       Q+   G+        IH G+  CS+  R+      
Sbjct: 192 NDAVYIEKYLENPRHIEV-------QIFGDGM-----GNAIHFGERDCSVQRRNQKIWEE 239

Query: 885 -----LSQQLKDELISQTKALAGALNVIGLINVQYAIKDGKIYILEVNPR 929
                +S Q + E+          ++  G   +++  ++G+ Y +E+N R
Sbjct: 240 AHSPVISAQDRTEIGETCVKAMKKIDYRGAGTIEFLYENGQFYFIEMNTR 289



 Score = 41.6 bits (96), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 78/188 (41%), Gaps = 17/188 (9%)

Query: 214 EIGLPLIIRPSFTLGGTGGGIAYNRSEFLEIVEN----GLHASPTTEVLIEESVLGWKEY 269
           EIG P++++ S   GG G  IAY+ ++  E ++      L A     V IE+ +   +  
Sbjct: 148 EIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYLENPRHI 207

Query: 270 ELEMMRDIKGNCIVV----CSIENLDPMGVHTGDSITVAPALTLTDKEYQLMRNAAIAVL 325
           E+++  D  GN I      CS++  +        S    P ++  D+    +    +  +
Sbjct: 208 EVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHS----PVISAQDR--TEIGETCVKAM 261

Query: 326 KEIGVESGGANVQFAVNPKNGKMVVIEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTL 385
           K+I    G   ++F    +NG+   IEMN R+     +    TG  +      +A    L
Sbjct: 262 KKIDYR-GAGTIEFLY--ENGQFYFIEMNTRLQVEHPVTEAITGIDLVHEQIYVASENRL 318

Query: 386 DELGNDIT 393
                DIT
Sbjct: 319 SVQQKDIT 326


>gi|254780451|ref|YP_003064864.1| aconitate hydratase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 896

 Score = 28.9 bits (63), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 576 LHPVFKCVDTCAGEFSSPTSYMYS-TYETNFINKPVSEDKVSDRKKIVILGGGPNRIGQG 634
           +H   K +D   G   S  SY +S     +F   P   D  + R  IV+LGG P  I   
Sbjct: 65  IHAFVKWLDN-KGTVESEVSYRFSRVLMQDFTGVPAVVDLAAMRDAIVVLGGDPQNINPL 123

Query: 635 IEFDYCCCHA 644
           +  D    H+
Sbjct: 124 VPVDLVIDHS 133


>gi|255764487|ref|YP_003065115.2| heat shock protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 219

 Score = 27.7 bits (60), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 105 MGVLDRYGVEMIGAKPETIDKAEDRSLFSKAMQNIPLAT 143
           M  L+RYGV+ I AK +  +    +++F +    +P  T
Sbjct: 124 MSTLERYGVKKIDAKDQKFNPNMHQAMFEEPHDTVPANT 162


>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 26.9 bits (58), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 5/45 (11%)

Query: 772 GFPLLIRPSY--VLGGRAMQIVYSENMLQDYLLDTLPGLVSEEIK 814
           GF  +I+P    +  G+++Q V  E  L+DYL++     +SEEI+
Sbjct: 532 GFLYIIKPPLYGITRGKSLQYVKDEESLEDYLINQ---SLSEEIE 573


>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 236

 Score = 26.6 bits (57), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 134 KAMQNIPLATPKSILANATDIKEHDRKLHEEERENLKKTLSKEELDAALYAL 185
           +A++   ++TP  IL+  + I++  R L     + + K  +KEEL A + A+
Sbjct: 64  RALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARIRAI 115


>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 354

 Score = 26.2 bits (56), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 814 KRQYPNDKTGQINTLLGTHPLLFDSYLSDAMEID-VDALCQNDQVIVVGIIEHIEEAGI- 871
           K  + ND T  +   LG  PL+ + +     EI  + A   N  +     I++    GI 
Sbjct: 154 KVYHENDCTQNLYASLGNVPLILERFTDFNCEISIIAARSLNGSICFYDPIQNTHVNGIL 213

Query: 872 HSGDSACSLPSRSLSQQLKDELISQTKALAGALNVIGLINVQYAI-KDGKIYILEVNPRA 930
           H      S+   S+SQ+      S  + +   L+ +G++ +++ +  DG +   E+ PR 
Sbjct: 214 HK-----SIVPASISQKTSLLAHSAMRKVLETLDYVGILCIEFFVTNDGNVIANEMAPRV 268

Query: 931 SRT 933
             +
Sbjct: 269 HNS 271


>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 652

 Score = 25.4 bits (54), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 980  KESVFPFNKFPGVDILLGPEMRSTGEV 1006
            KE+V  + +    D+  GP +RSTG+V
Sbjct: 168  KENVTLYRQGEWFDLCRGPHVRSTGQV 194


>gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 518

 Score = 25.4 bits (54), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 755 NGISHSVEHARLIACEIGFPLL 776
           +G  HS  +A++ A EIG PL+
Sbjct: 433 SGTDHSFRYAQIQAVEIGLPLI 454


>gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 523

 Score = 24.6 bits (52), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 902 GALNVIGLINVQYAIKDGKIYILEVNPRASRTVPFIAKAIG 942
           G+L V G I+V+YA K   + +++ + R S    FI   +G
Sbjct: 444 GSLTVDGWIDVRYASKLFGVNLVDEDDRYSTLAGFILWRLG 484


>gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide
            formyltransferase/IMP cyclohydrolase [Candidatus
            Liberibacter asiaticus str. psy62]
          Length = 536

 Score = 24.6 bits (52), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 8/61 (13%)

Query: 1033 TVFVSVRDADKKRIVPIIQNFKKLGFKIMATEGTARFLESHGL------ETQKINKVLEG 1086
            T  +SV +  K  +V         G KI++T GT + LE  G+      +  K  +++ G
Sbjct: 18   TALISVHN--KTGVVEFASRLLSRGIKIISTGGTCQLLEEEGIPVTSVFDITKFPEIMGG 75

Query: 1087 R 1087
            R
Sbjct: 76   R 76


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.136    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 720,547
Number of Sequences: 1233
Number of extensions: 30544
Number of successful extensions: 133
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 17
length of query: 1162
length of database: 328,796
effective HSP length: 84
effective length of query: 1078
effective length of database: 225,224
effective search space: 242791472
effective search space used: 242791472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)