HHsearch alignment for GI: 254780440 and conserved domain: PRK06330
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated.
Probab=100.00 E-value=5e-44 Score=301.21 Aligned_cols=154 Identities=33% Similarity=0.551 Sum_probs=151.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 84314889999999999999872489999999999751762224304899988768799999999744442104721013
Q gi|254780440|r 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82 (158)
Q Consensus 3 ~k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~~ 82 (158)
T Consensus 748 ~~liVT~~sl~kKKkELe~Lv~veipENSKdIg~ArelGDLRENAEYKaAkEkQ~~L~~~i~rLe~Ei~rArIlD~~~v~ 827 (906)
T PRK06330 748 IGFLVTRRALNKKKKELEHLKNVEIPENSKDIGEAQELGDLRENAEYKAAKEKQQQLQAALKRLEAEIKSAKILDLTDVK 827 (906)
T ss_pred CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCC
T ss_conf 52896189998889999998644555245779999863660120677889999999999999999985520622532032
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEE
Q ss_conf 32111365799953476523599996310133458815013178998728888878999828971999999989
Q gi|254780440|r 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 (158)
Q Consensus 83 ~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~ 156 (158)
T Consensus 828 T~kVg~GTkV~l~n~~tg~~etYtILGpWDaDPek~IISY~SP~G~~LLgkKtGd~~~~~~~~~~~~y~v~~I~ 901 (906)
T PRK06330 828 TSKVGFGTKVKLKNESTGEEESYSILGPWESDPEKGIISYQSPLGKSLLGKKEGDSADFVINDTETRYTVLDIE 901 (906)
T ss_pred CCEECCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECCCHHHHHHHCCCCCCEEEEEECCCEEEEEEEEEE
T ss_conf 33440554899875577866789974476678212823401755476527876771699967846899998633