HHsearch alignment for GI: 254780440 and conserved domain: PRK06330

>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated.
Probab=100.00  E-value=5e-44  Score=301.21  Aligned_cols=154  Identities=33%  Similarity=0.551  Sum_probs=151.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             84314889999999999999872489999999999751762224304899988768799999999744442104721013
Q gi|254780440|r    3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS   82 (158)
Q Consensus         3 ~k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~~   82 (158)
T Consensus       748 ~~liVT~~sl~kKKkELe~Lv~veipENSKdIg~ArelGDLRENAEYKaAkEkQ~~L~~~i~rLe~Ei~rArIlD~~~v~  827 (906)
T PRK06330        748 IGFLVTRRALNKKKKELEHLKNVEIPENSKDIGEAQELGDLRENAEYKAAKEKQQQLQAALKRLEAEIKSAKILDLTDVK  827 (906)
T ss_pred             CEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCC
T ss_conf             52896189998889999998644555245779999863660120677889999999999999999985520622532032


Q ss_pred             CCCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEE
Q ss_conf             32111365799953476523599996310133458815013178998728888878999828971999999989
Q gi|254780440|r   83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL  156 (158)
Q Consensus        83 ~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~  156 (158)
T Consensus       828 T~kVg~GTkV~l~n~~tg~~etYtILGpWDaDPek~IISY~SP~G~~LLgkKtGd~~~~~~~~~~~~y~v~~I~  901 (906)
T PRK06330        828 TSKVGFGTKVKLKNESTGEEESYSILGPWESDPEKGIISYQSPLGKSLLGKKEGDSADFVINDTETRYTVLDIE  901 (906)
T ss_pred             CCEECCCEEEEEEECCCCCEEEEEEECCCCCCCCCCCEECCCHHHHHHHCCCCCCEEEEEECCCEEEEEEEEEE
T ss_conf             33440554899875577866789974476678212823401755476527876771699967846899998633